Query 024996
Match_columns 259
No_of_seqs 215 out of 1536
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14994 SAM-dependent 16S rib 100.0 4.6E-38 9.9E-43 287.8 22.5 183 75-257 6-188 (287)
2 COG0007 CysG Uroporphyrinogen- 100.0 5.9E-34 1.3E-38 253.6 18.9 175 79-255 2-185 (244)
3 COG0313 Predicted methyltransf 100.0 1.2E-33 2.7E-38 254.2 20.0 181 78-258 2-182 (275)
4 COG2875 CobM Precorrin-4 methy 100.0 4.2E-33 9.1E-38 244.6 18.6 179 79-258 1-186 (254)
5 PRK06136 uroporphyrin-III C-me 100.0 8.1E-33 1.8E-37 246.6 20.2 175 79-258 1-192 (249)
6 PRK15473 cbiF cobalt-precorrin 100.0 1.5E-32 3.3E-37 247.4 21.8 176 79-258 6-191 (257)
7 TIGR01465 cobM_cbiF precorrin- 100.0 2.1E-32 4.6E-37 240.9 20.5 175 83-258 1-182 (229)
8 PLN02625 uroporphyrin-III C-me 100.0 4.7E-32 1E-36 244.9 21.2 180 73-257 7-203 (263)
9 TIGR01469 cobA_cysG_Cterm urop 100.0 9.9E-32 2.1E-36 237.4 19.7 172 82-258 1-188 (236)
10 PRK15478 cbiH cobalt-precorrin 100.0 1E-30 2.2E-35 233.9 19.3 174 82-258 1-184 (241)
11 PRK05948 precorrin-2 methyltra 100.0 1.1E-30 2.4E-35 233.5 19.0 172 80-254 3-193 (238)
12 PRK05765 precorrin-3B C17-meth 100.0 8.4E-31 1.8E-35 234.9 18.2 175 81-258 2-183 (246)
13 TIGR01467 cobI_cbiL precorrin- 100.0 2.1E-30 4.5E-35 229.2 19.3 171 81-254 1-189 (230)
14 PF00590 TP_methylase: Tetrapy 100.0 1.2E-30 2.7E-35 225.4 17.1 172 82-257 1-184 (210)
15 PRK05990 precorrin-2 C(20)-met 100.0 2.8E-30 6.1E-35 230.9 19.6 171 80-254 2-196 (241)
16 PRK07168 bifunctional uroporph 100.0 2.3E-30 4.9E-35 251.4 20.1 174 79-258 1-190 (474)
17 COG2243 CobF Precorrin-2 methy 100.0 3E-30 6.5E-35 228.8 18.2 172 80-254 1-189 (234)
18 TIGR00096 probable S-adenosylm 100.0 4.6E-30 9.9E-35 233.7 18.7 176 82-257 1-176 (276)
19 PRK05576 cobalt-precorrin-2 C( 100.0 1.8E-29 3.9E-34 223.5 17.9 171 80-254 1-188 (229)
20 PRK10637 cysG siroheme synthas 100.0 6E-29 1.3E-33 240.6 20.0 175 78-254 213-397 (457)
21 TIGR01466 cobJ_cbiH precorrin- 100.0 6.8E-29 1.5E-33 220.5 18.7 170 83-258 1-183 (239)
22 COG1010 CobJ Precorrin-3B meth 100.0 5.5E-29 1.2E-33 219.1 17.6 176 79-258 1-187 (249)
23 PRK05787 cobalt-precorrin-6Y C 100.0 5.5E-28 1.2E-32 210.0 16.4 163 82-255 1-166 (210)
24 PRK05991 precorrin-3B C17-meth 100.0 1.1E-27 2.4E-32 214.9 18.6 171 79-258 1-189 (250)
25 PRK08284 precorrin 6A synthase 100.0 2.2E-27 4.8E-32 213.9 17.1 156 81-243 2-191 (253)
26 TIGR02467 CbiE precorrin-6y C5 99.9 4.8E-27 1E-31 204.3 15.7 162 85-257 1-166 (204)
27 TIGR02434 CobF precorrin-6A sy 99.9 8.6E-27 1.9E-31 209.7 17.1 158 82-247 2-195 (249)
28 TIGR00522 dph5 diphthine synth 99.9 2.7E-26 5.9E-31 207.1 17.2 154 82-239 1-166 (257)
29 COG2241 CobL Precorrin-6B meth 99.9 4E-25 8.8E-30 193.7 16.2 160 82-254 1-163 (210)
30 PTZ00175 diphthine synthase; P 99.9 9.5E-25 2.1E-29 198.5 19.0 151 82-237 2-164 (270)
31 PRK04160 diphthine synthase; P 99.9 2E-24 4.4E-29 194.6 18.7 153 82-238 1-166 (258)
32 KOG1527 Uroporphyrin III methy 99.9 2.8E-24 6.1E-29 198.3 13.3 174 81-257 256-440 (506)
33 COG1798 DPH5 Diphthamide biosy 99.7 1.5E-16 3.3E-21 141.5 15.2 122 82-208 1-129 (260)
34 COG3956 Protein containing tet 99.3 3.5E-11 7.6E-16 111.6 14.0 168 79-258 1-182 (488)
35 KOG3123 Diphthine synthase [Tr 99.2 1.1E-10 2.4E-15 102.1 9.6 133 82-219 1-142 (272)
36 COG0120 RpiA Ribose 5-phosphat 78.4 9 0.0002 34.4 7.1 110 85-205 23-156 (227)
37 TIGR01921 DAP-DH diaminopimela 73.1 85 0.0018 29.7 13.2 146 102-253 56-218 (324)
38 TIGR03365 Bsubt_queE 7-cyano-7 70.9 12 0.00026 33.4 6.1 57 139-196 58-114 (238)
39 COG1712 Predicted dinucleotide 69.9 88 0.0019 28.5 13.4 153 82-258 2-176 (255)
40 TIGR03855 NAD_NadX aspartate d 69.2 48 0.001 29.6 9.5 103 141-258 49-152 (229)
41 cd01524 RHOD_Pyr_redox Member 64.5 52 0.0011 23.9 7.6 83 97-191 2-84 (90)
42 COG0602 NrdG Organic radical a 59.4 27 0.00058 30.8 6.0 49 140-190 59-107 (212)
43 COG1737 RpiR Transcriptional r 58.0 1.2E+02 0.0026 27.6 10.2 105 140-249 117-223 (281)
44 TIGR01819 F420_cofD LPPG:FO 2- 56.2 45 0.00098 31.2 7.1 76 88-184 165-241 (297)
45 COG0391 Uncharacterized conser 54.8 96 0.0021 29.4 9.1 32 81-115 167-199 (323)
46 cd01965 Nitrogenase_MoFe_beta_ 52.5 1.2E+02 0.0026 29.2 9.7 37 154-192 156-192 (428)
47 cd03466 Nitrogenase_NifN_2 Nit 50.4 1.3E+02 0.0028 29.1 9.6 49 142-193 140-192 (429)
48 PRK05301 pyrroloquinoline quin 49.1 64 0.0014 30.4 7.2 40 151-191 60-99 (378)
49 PF06414 Zeta_toxin: Zeta toxi 48.0 24 0.00053 30.0 3.8 102 79-188 13-125 (199)
50 PRK13304 L-aspartate dehydroge 47.8 1.4E+02 0.003 26.9 8.8 109 142-258 74-186 (265)
51 PRK05443 polyphosphate kinase; 47.6 94 0.002 32.5 8.5 84 100-185 332-425 (691)
52 cd07186 CofD_like LPPG:FO 2-ph 46.5 1.6E+02 0.0035 27.6 9.2 72 94-184 171-244 (303)
53 TIGR02495 NrdG2 anaerobic ribo 46.1 67 0.0014 26.9 6.2 52 139-192 49-100 (191)
54 PRK10017 colanic acid biosynth 45.7 1E+02 0.0022 30.0 8.1 46 82-128 150-197 (426)
55 TIGR02109 PQQ_syn_pqqE coenzym 45.1 74 0.0016 29.6 6.9 44 145-189 44-88 (358)
56 PRK02261 methylaspartate mutas 44.8 1.7E+02 0.0037 23.8 10.2 119 79-200 1-129 (137)
57 TIGR00238 KamA family protein. 44.5 1.7E+02 0.0037 27.4 9.2 39 141-180 145-187 (331)
58 COG1634 Uncharacterized Rossma 43.3 43 0.00094 30.2 4.6 72 81-164 53-124 (232)
59 PRK00861 putative lipid kinase 43.1 1.1E+02 0.0024 27.7 7.6 51 149-205 53-103 (300)
60 cd01523 RHOD_Lact_B Member of 41.8 1.4E+02 0.003 22.0 9.0 39 147-190 55-93 (100)
61 PRK13057 putative lipid kinase 40.7 1.3E+02 0.0029 27.1 7.7 50 150-205 47-96 (287)
62 TIGR01470 cysG_Nterm siroheme 40.5 2.4E+02 0.0051 24.5 8.9 89 81-188 10-100 (205)
63 PF04055 Radical_SAM: Radical 40.3 72 0.0016 24.8 5.2 63 139-202 30-100 (166)
64 PF13353 Fer4_12: 4Fe-4S singl 40.0 61 0.0013 25.4 4.7 53 140-193 38-96 (139)
65 PRK14093 UDP-N-acetylmuramoyla 39.6 3.7E+02 0.0081 26.2 11.7 96 153-258 369-471 (479)
66 KOG0024 Sorbitol dehydrogenase 39.1 88 0.0019 29.9 6.2 31 81-113 171-201 (354)
67 PRK12361 hypothetical protein; 37.6 1.7E+02 0.0036 29.2 8.4 51 149-204 293-343 (547)
68 COG1063 Tdh Threonine dehydrog 37.2 1.6E+02 0.0035 27.5 7.8 31 81-113 170-200 (350)
69 PRK11914 diacylglycerol kinase 37.1 1.2E+02 0.0025 27.7 6.7 52 148-205 59-110 (306)
70 COG0421 SpeE Spermidine syntha 37.0 92 0.002 28.8 6.0 37 81-123 78-114 (282)
71 COG1736 DPH2 Diphthamide synth 36.8 2.1E+02 0.0046 27.3 8.5 82 107-195 76-161 (347)
72 cd05013 SIS_RpiR RpiR-like pro 36.8 1.9E+02 0.0041 22.0 10.2 91 143-240 3-95 (139)
73 PLN02335 anthranilate synthase 36.7 31 0.00068 30.4 2.8 39 147-190 12-50 (222)
74 PRK11337 DNA-binding transcrip 36.6 3.2E+02 0.0069 24.5 10.1 95 141-240 128-222 (292)
75 cd01335 Radical_SAM Radical SA 36.3 1.2E+02 0.0027 24.0 6.2 46 146-192 37-84 (204)
76 PRK11557 putative DNA-binding 36.2 3.1E+02 0.0067 24.3 10.6 95 141-240 116-210 (278)
77 PF00781 DAGK_cat: Diacylglyce 36.1 1.4E+02 0.003 23.5 6.2 51 149-205 50-104 (130)
78 PF13394 Fer4_14: 4Fe-4S singl 35.2 72 0.0016 24.4 4.4 36 157-193 51-91 (119)
79 TIGR02668 moaA_archaeal probab 35.1 1.3E+02 0.0027 27.3 6.6 38 151-189 54-92 (302)
80 TIGR00284 dihydropteroate synt 34.9 3.7E+02 0.008 27.0 10.2 107 82-193 180-291 (499)
81 PRK13606 LPPG:FO 2-phospho-L-l 34.9 2.6E+02 0.0056 26.3 8.6 68 94-178 173-241 (303)
82 TIGR01285 nifN nitrogenase mol 34.8 4.3E+02 0.0094 25.6 15.5 38 154-193 168-205 (432)
83 PRK13302 putative L-aspartate 34.7 3.2E+02 0.0069 24.7 9.1 45 143-191 81-125 (271)
84 COG1509 KamA Lysine 2,3-aminom 34.7 4.3E+02 0.0094 25.5 10.5 111 140-254 143-275 (369)
85 COG1597 LCB5 Sphingosine kinas 34.7 1.5E+02 0.0033 27.3 7.1 53 148-206 53-106 (301)
86 PF02441 Flavoprotein: Flavopr 34.6 53 0.0011 26.1 3.6 46 154-201 1-46 (129)
87 PF00389 2-Hacid_dh: D-isomer 34.0 2.3E+02 0.005 22.2 7.4 91 96-197 7-98 (133)
88 cd05013 SIS_RpiR RpiR-like pro 33.8 1.8E+02 0.0038 22.1 6.5 39 150-191 58-96 (139)
89 PRK13301 putative L-aspartate 33.8 3.8E+02 0.0083 24.7 14.1 108 142-258 75-187 (267)
90 TIGR02666 moaA molybdenum cofa 33.7 1.5E+02 0.0032 27.3 6.9 48 140-188 46-95 (334)
91 COG3964 Predicted amidohydrola 33.4 1.2E+02 0.0025 29.0 6.0 113 90-205 132-264 (386)
92 COG0113 HemB Delta-aminolevuli 31.9 2.5E+02 0.0054 26.6 7.8 95 139-253 232-329 (330)
93 COG0420 SbcD DNA repair exonuc 31.6 63 0.0014 30.6 4.1 48 140-191 26-84 (390)
94 PRK14719 bifunctional RNAse/5- 31.2 2.8E+02 0.006 26.5 8.4 72 108-186 25-99 (360)
95 PF06842 DUF1242: Protein of u 31.1 12 0.00026 24.0 -0.6 16 50-65 6-22 (36)
96 PF02006 DUF137: Protein of un 31.0 68 0.0015 27.8 3.7 68 139-228 42-109 (178)
97 TIGR03278 methan_mark_10 putat 30.9 1.5E+02 0.0033 28.8 6.7 48 139-187 56-107 (404)
98 PLN00093 geranylgeranyl diphos 30.4 54 0.0012 32.0 3.5 34 78-114 37-70 (450)
99 PRK10076 pyruvate formate lyas 29.4 1.1E+02 0.0024 26.8 5.0 33 156-189 41-74 (213)
100 PF01936 NYN: NYN domain; Int 29.3 92 0.002 24.4 4.2 41 143-189 84-126 (146)
101 PRK13337 putative lipid kinase 29.0 2.4E+02 0.0051 25.7 7.3 50 150-205 54-105 (304)
102 COG2243 CobF Precorrin-2 methy 28.9 23 0.00049 32.0 0.6 53 2-54 174-228 (234)
103 KOG1467 Translation initiation 28.2 3.5E+02 0.0075 27.4 8.5 51 142-196 371-426 (556)
104 COG1432 Uncharacterized conser 27.9 1.5E+02 0.0032 25.3 5.4 36 154-195 112-147 (181)
105 PRK00421 murC UDP-N-acetylmura 27.9 4.4E+02 0.0096 25.4 9.4 39 139-180 420-458 (461)
106 TIGR02493 PFLA pyruvate format 27.7 1.4E+02 0.003 25.8 5.4 32 157-189 69-101 (235)
107 TIGR01286 nifK nitrogenase mol 27.4 6.1E+02 0.013 25.4 10.4 39 154-194 221-259 (515)
108 PRK07239 bifunctional uroporph 27.0 3.7E+02 0.0081 25.2 8.5 29 173-201 192-220 (381)
109 PF13344 Hydrolase_6: Haloacid 26.7 1.6E+02 0.0035 22.4 5.0 64 144-211 21-86 (101)
110 TIGR03705 poly_P_kin polyphosp 26.7 2.7E+02 0.0058 29.1 7.9 84 100-185 323-416 (672)
111 PRK14477 bifunctional nitrogen 26.7 5.4E+02 0.012 27.8 10.4 37 155-193 646-682 (917)
112 PRK13059 putative lipid kinase 26.6 2.8E+02 0.0061 25.1 7.4 53 147-205 50-104 (295)
113 PF13090 PP_kinase_C: Polyphos 26.5 2.6E+02 0.0057 26.8 7.2 87 101-191 3-99 (352)
114 TIGR03820 lys_2_3_AblA lysine- 26.4 1.7E+02 0.0036 28.8 6.0 108 141-254 141-271 (417)
115 TIGR03470 HpnH hopanoid biosyn 26.0 1.4E+02 0.003 27.7 5.2 41 153-194 72-112 (318)
116 cd03145 GAT1_cyanophycinase Ty 26.0 4.4E+02 0.0095 22.9 9.0 114 82-201 1-133 (217)
117 PF02780 Transketolase_C: Tran 24.9 65 0.0014 25.2 2.5 8 152-159 34-41 (124)
118 PRK08535 translation initiatio 24.6 1.8E+02 0.0039 27.0 5.8 55 142-200 133-188 (310)
119 COG1086 Predicted nucleoside-d 24.6 7.9E+02 0.017 25.3 11.4 101 81-196 117-218 (588)
120 KOG3808 Uncharacterized conser 24.5 19 0.00041 26.3 -0.6 22 50-71 15-36 (74)
121 COG0528 PyrH Uridylate kinase 24.3 1.1E+02 0.0024 27.7 4.1 36 79-114 123-161 (238)
122 PLN02925 4-hydroxy-3-methylbut 24.1 2E+02 0.0043 30.3 6.3 121 14-155 593-725 (733)
123 PRK13762 tRNA-modifying enzyme 23.9 1.5E+02 0.0033 27.7 5.1 35 154-189 131-165 (322)
124 TIGR01826 CofD_related conserv 23.8 5.8E+02 0.013 24.0 8.9 20 95-114 161-180 (310)
125 COG3580 Uncharacterized protei 23.7 6.5E+02 0.014 24.1 9.7 88 144-233 191-302 (351)
126 PF02590 SPOUT_MTase: Predicte 23.7 4.3E+02 0.0094 22.0 7.5 78 82-159 2-103 (155)
127 COG1832 Predicted CoA-binding 23.7 1.8E+02 0.0038 24.3 4.8 39 145-185 8-46 (140)
128 TIGR00511 ribulose_e2b2 ribose 23.6 2E+02 0.0043 26.7 5.8 54 144-200 130-183 (301)
129 COG1064 AdhP Zn-dependent alco 23.4 6.5E+02 0.014 24.0 9.4 154 82-253 169-326 (339)
130 PRK09456 ?-D-glucose-1-phospha 23.4 4.4E+02 0.0095 22.0 9.9 57 188-251 141-197 (199)
131 PF04230 PS_pyruv_trans: Polys 23.2 1.2E+02 0.0027 25.4 4.1 46 81-127 100-147 (286)
132 PF00162 PGK: Phosphoglycerate 23.2 4.2E+02 0.0091 25.7 8.0 97 140-236 34-143 (384)
133 PF07966 A1_Propeptide: A1 Pro 23.1 28 0.0006 21.0 0.0 21 5-25 7-27 (29)
134 TIGR01261 hisB_Nterm histidino 23.1 4.3E+02 0.0094 21.8 11.8 92 144-242 36-150 (161)
135 PRK13361 molybdenum cofactor b 22.9 3E+02 0.0065 25.4 6.9 48 140-188 48-97 (329)
136 TIGR00824 EIIA-man PTS system, 22.7 2.6E+02 0.0056 21.9 5.6 48 144-197 49-98 (116)
137 cd06167 LabA_like LabA_like pr 22.5 1.9E+02 0.0042 22.9 4.9 39 146-189 91-130 (149)
138 PRK10773 murF UDP-N-acetylmura 22.5 7.1E+02 0.015 24.0 10.3 98 144-253 342-449 (453)
139 cd05560 Xcc1710_like Xcc1710_l 22.4 2.8E+02 0.0061 21.6 5.7 37 154-192 53-89 (109)
140 PRK09283 delta-aminolevulinic 22.3 4.1E+02 0.0088 25.3 7.5 92 140-251 228-322 (323)
141 PF07796 DUF1638: Protein of u 22.1 2.3E+02 0.0049 23.6 5.4 44 150-194 115-158 (166)
142 PLN03034 phosphoglycerate kina 22.1 8.1E+02 0.018 24.6 10.1 70 141-211 119-193 (481)
143 COG1497 Predicted transcriptio 21.8 5.3E+02 0.011 23.7 7.8 96 80-188 157-255 (260)
144 PRK15482 transcriptional regul 21.7 5.8E+02 0.013 22.8 10.6 94 142-240 124-217 (285)
145 cd05126 Mth938 Mth938 domain. 21.7 2.4E+02 0.0053 22.4 5.2 40 150-190 55-94 (117)
146 COG3962 Acetolactate synthase 21.7 4.6E+02 0.0099 26.6 8.0 34 81-114 82-117 (617)
147 TIGR03822 AblA_like_2 lysine-2 21.6 2E+02 0.0043 26.8 5.4 40 142-182 123-166 (321)
148 cd06404 PB1_aPKC PB1 domain is 21.5 67 0.0015 24.4 1.8 51 139-190 22-83 (83)
149 cd01974 Nitrogenase_MoFe_beta 21.4 7.4E+02 0.016 23.9 10.1 36 155-193 162-198 (435)
150 cd01522 RHOD_1 Member of the R 21.2 3.9E+02 0.0084 20.5 9.1 85 99-189 5-96 (117)
151 PF08532 Glyco_hydro_42M: Beta 21.1 2.7E+02 0.0058 23.9 5.8 56 172-239 33-91 (207)
152 PRK13761 hypothetical protein; 20.8 1.1E+02 0.0025 27.7 3.4 40 186-228 131-170 (248)
153 cd04823 ALAD_PBGS_aspartate_ri 20.8 4.9E+02 0.011 24.7 7.7 92 140-251 225-319 (320)
154 cd06334 PBP1_ABC_ligand_bindin 20.8 6.6E+02 0.014 23.1 12.4 115 81-202 66-192 (351)
155 PRK05637 anthranilate synthase 20.6 97 0.0021 27.0 3.0 6 189-194 52-57 (208)
156 cd05005 SIS_PHI Hexulose-6-pho 20.3 5E+02 0.011 21.4 10.0 90 141-240 21-110 (179)
157 COG1504 Uncharacterized conser 20.3 2.1E+02 0.0045 23.2 4.4 82 106-195 20-102 (121)
158 cd07229 Pat_TGL3_like Triacylg 20.0 1.9E+02 0.0041 28.1 5.0 64 140-204 68-131 (391)
No 1
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=100.00 E-value=4.6e-38 Score=287.79 Aligned_cols=183 Identities=45% Similarity=0.761 Sum_probs=170.6
Q ss_pred CCCCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCC
Q 024996 75 KRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (259)
Q Consensus 75 ~~~~~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~ 154 (259)
+..+++|+||+||+||||+++||+||+++|++||+|+|++++.+..+++.+.++++++.++.+++++..+.|++.+++|+
T Consensus 6 ~~~~~~g~Ly~VgtgiGn~edITlRAl~~L~~aDvI~~edtr~t~~ll~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~G~ 85 (287)
T PRK14994 6 SADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFAINARLFALHDHNEQQKAETLLAKLQEGQ 85 (287)
T ss_pred cCCCCCCeEEEEeCCCCChHHhhHHHHHHHHhCCEEEEeCCcchHHHHhhcCCCCEEEEccCCCHHHHHHHHHHHHHCCC
Confidence 34466799999999999999999999999999999999999888788988888888888887788888899999999999
Q ss_pred eEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhhhCCCCe
Q 024996 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKT 234 (259)
Q Consensus 155 ~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~T 234 (259)
+|+++||.|||++||++.++++.+++.|++|++||||||+++|++.+|++.+.|.|.||+|.+..++.+.|+.+++.+.|
T Consensus 86 ~ValvSdaGdP~I~dpg~~Lv~~~~~~gi~v~vIPGiSA~~aA~a~sG~~~~~f~f~Gflp~~~~~r~~~L~~l~~~~~t 165 (287)
T PRK14994 86 NIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKALEAEPRT 165 (287)
T ss_pred eEEEEccCCCCceeCCHHHHHHHHHHCCCCEEEeCCHHHHHHHHHHcCCCCCcceEeEECCCCCchHHHHHHHHhcCCCe
Confidence 99999999999999999999999999999999999999999999999999889999999999877777889999999999
Q ss_pred EEEEcCcccHHHHHHHHHHhhCC
Q 024996 235 QIFYVPPHKLLQFLEETSLLFGY 257 (259)
Q Consensus 235 lVl~~~~~~l~~il~~L~e~~~~ 257 (259)
+|||++++++.+.++.+.+.|+.
T Consensus 166 ~V~yesp~R~~~~l~~l~~~~g~ 188 (287)
T PRK14994 166 LIFYESTHRLLDSLEDIVAVLGE 188 (287)
T ss_pred EEEEEEChhHHHHHHHHHHhcCC
Confidence 99999999999999999999874
No 2
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=100.00 E-value=5.9e-34 Score=253.61 Aligned_cols=175 Identities=21% Similarity=0.250 Sum_probs=153.5
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecC------CCCHHHHHHHHHHHHhC
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRLKQ 152 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~------~~~~~~~~~~I~e~l~~ 152 (259)
++|++|+||.|||||++||+||+++|++||+|+| |..+++++++.++.+++.+... ...++++.+.+++++++
T Consensus 2 ~~GkV~lVGAGPGdp~LLTlka~~~L~~ADvvly-D~LV~~~il~~~~~~a~~i~vGkr~g~~~~~q~eIn~~lv~~a~~ 80 (244)
T COG0007 2 KPGKVYLVGAGPGDPGLLTLRALRALQEADVVLY-DRLVPEEVLALARRDAERIYVGKRPGGHSKPQDEINALLVELARE 80 (244)
T ss_pred CcceEEEEecCCCChhhhhHHHHHHHhhCCEEEE-cCcCCHHHHHhhccCCEEEEecCcCCCCCCCHHHHHHHHHHHHhc
Confidence 5699999999999999999999999999999999 6789999999888778776542 24578899999999999
Q ss_pred CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc--e-EEEEeecCCCcchHHHHHhhh
Q 024996 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE--F-TFVGFLPKHARSRTERLMLSA 229 (259)
Q Consensus 153 G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~--~-~~vg~lp~~~~~~~~~L~~l~ 229 (259)
|++|++| +.|||++|+++.++++.+.+.||++||+|||||..++++..|+|++. . .-+.|.+.|..+..-+|+.++
T Consensus 81 G~~VVRL-KgGDP~iFGRggEE~~~l~~~gI~~eVVPGiTSa~a~~a~agIPlT~R~~a~s~~~vTgh~~~~~~~w~~la 159 (244)
T COG0007 81 GKRVVRL-KGGDPYIFGRGGEEIEALAEAGIEFEVVPGITSAIAAPAYAGIPLTHRGVASSFTFVTGHDRDGKLDWEALA 159 (244)
T ss_pred CCeEEEe-cCCCCCeecCcHHHHHHHHHcCCceEEeCccchHHHHHHHcCCceeecCccceEEEEeCcCCCCCcChHHhc
Confidence 9999999 89999999999999999999999999999999999999999999972 1 111244777543224689999
Q ss_pred CCCCeEEEEcCcccHHHHHHHHHHhh
Q 024996 230 NEVKTQIFYVPPHKLLQFLEETSLLF 255 (259)
Q Consensus 230 ~~~~TlVl~~~~~~l~~il~~L~e~~ 255 (259)
+..+|+||||+.+++.++.+.|+++-
T Consensus 160 ~~~~TlVi~Mg~~~l~~i~~~Li~~G 185 (244)
T COG0007 160 RSVGTLVILMGASRLAEIARELIAHG 185 (244)
T ss_pred ccCCCEEEEeCcchHHHHHHHHHHcC
Confidence 99999999999999999999999974
No 3
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=254.22 Aligned_cols=181 Identities=53% Similarity=0.806 Sum_probs=174.6
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 024996 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (259)
Q Consensus 78 ~~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv 157 (259)
+|+|.+|+|++..||.++||.||+++|+++|+|+++|+|+++.+++++++..+.+.++++++++....|++.+++|++|+
T Consensus 2 ~~~g~LYlV~TPIGNl~Dit~Ral~~L~~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~va 81 (275)
T COG0313 2 MMMGTLYLVPTPIGNLADITLRALEVLKEVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVA 81 (275)
T ss_pred CCCceEEEeCCCCCChHhcCHHHHHHHhhCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHHhcCCeEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhhhCCCCeEEE
Q 024996 158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF 237 (259)
Q Consensus 158 ~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~TlVl 237 (259)
++||.|.|++.|+|..|++.+++.||+|+++||+||+..|.+.+|+|-+.|.|.||+|.+.++|.+.++.+.+...|+||
T Consensus 82 lVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP~k~~~R~~~l~~l~~~~~t~If 161 (275)
T COG0313 82 LVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSASGLPSQRFLFEGFLPRKSKERRKRLEALANEPRTLIF 161 (275)
T ss_pred EEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHHcCCCCCCeeEeccCCCCccHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred EcCcccHHHHHHHHHHhhCCC
Q 024996 238 YVPPHKLLQFLEETSLLFGYS 258 (259)
Q Consensus 238 ~~~~~~l~~il~~L~e~~~~~ 258 (259)
|+++||+.+.++.+.+.+|.+
T Consensus 162 yEsphRl~~tL~d~~~~~g~~ 182 (275)
T COG0313 162 YESPHRLLATLEDIVEVLGSD 182 (275)
T ss_pred EecchhHHHHHHHHHHHcCCC
Confidence 999999999999999999843
No 4
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=100.00 E-value=4.2e-33 Score=244.56 Aligned_cols=179 Identities=20% Similarity=0.285 Sum_probs=157.9
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~ 158 (259)
|..++||||.||||||+||+|+.++|++||+|+|+++.+++++++.++.+++++....++.+++.+.++++.++|+.|++
T Consensus 1 ~~~~VyFIGAGPGdpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvR 80 (254)
T COG2875 1 MAMKVYFIGAGPGDPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVR 80 (254)
T ss_pred CCceEEEEccCCCCcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 34689999999999999999999999999999999999999999999999999876667889999999999999999999
Q ss_pred EecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc--ce--EE-EEeecCCCc-chHHHHHhhhCCC
Q 024996 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD--EF--TF-VGFLPKHAR-SRTERLMLSANEV 232 (259)
Q Consensus 159 Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~--~~--~~-vg~lp~~~~-~~~~~L~~l~~~~ 232 (259)
| .+|||++||...+.+++|++.||++|++||||||++|||.+|+.++ +. .+ +.-.+.... ...+.++.+++++
T Consensus 81 L-hSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT~P~vsQtvilTR~sgrt~vpe~e~l~~la~~~ 159 (254)
T COG2875 81 L-HSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELTVPGVSQTVILTRPSGRTPVPEKESLAALAKHG 159 (254)
T ss_pred e-ecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceeecCCcceeEEEEccccCCCCCchhHHHHHHhcC
Confidence 9 7999999999999999999999999999999999999999999887 22 22 222222111 1246899999999
Q ss_pred CeEEEEcCcccHHHHHHHHHH-hhCCC
Q 024996 233 KTQIFYVPPHKLLQFLEETSL-LFGYS 258 (259)
Q Consensus 233 ~TlVl~~~~~~l~~il~~L~e-~~~~~ 258 (259)
.|++||.+.+.++++.++|.+ +||.|
T Consensus 160 aTm~I~L~v~~I~~vv~~L~~g~y~~d 186 (254)
T COG2875 160 ATMVIFLGVHAIDKVVEELLEGGYPPD 186 (254)
T ss_pred ceeEeeehhhHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999 89865
No 5
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=8.1e-33 Score=246.59 Aligned_cols=175 Identities=23% Similarity=0.325 Sum_probs=142.8
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCC------CCHHHHHHHHHHHHhC
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQ 152 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~------~~~~~~~~~I~e~l~~ 152 (259)
|+|+||+||+|||||++||+||+++|++||+|++++ +.++++++.++.+.+.+.... ...++..+.+.+.+.+
T Consensus 1 ~~g~l~iVGvGpGdp~~lT~~A~~~L~~advI~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (249)
T PRK06136 1 MMGKVYLVGAGPGDPDLITLKGVRLLEQADVVLYDD-LVSPEILAYAKPDAELIYVGKRAGRHSTKQEEINRLLVDYARK 79 (249)
T ss_pred CCcEEEEEEECCCChHHHHHHHHHHHhcCCEEEEcC-CCCHHHHhhCCCCCEEEeCCCcCCCCCcCHHHHHHHHHHHHHC
Confidence 679999999999999999999999999999999975 556677776654444433211 2234566677788889
Q ss_pred CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc------eEEEEeecCCCcch----H
Q 024996 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE------FTFVGFLPKHARSR----T 222 (259)
Q Consensus 153 G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~------~~~vg~lp~~~~~~----~ 222 (259)
|++|+++ ++|||++|+++.++++++++.|+++++||||||+++|+|++|+||++ +.++ +.|++.. .
T Consensus 80 g~~V~~l-~~GDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 155 (249)
T PRK06136 80 GKVVVRL-KGGDPFVFGRGGEELEALEAAGIPYEVVPGITAAIAAAAYAGIPLTHRGVARSVTFV---TGHEAAGKLEPE 155 (249)
T ss_pred CCeEEEE-eCCCchhhhcHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCcccCCcceeEEEE---ecccCCCccccc
Confidence 9999999 69999999999999999999999999999999999999999999973 3443 5554321 2
Q ss_pred HHHHhhhCCCCeEEEEcCcccHHHHHHHHHHh-hCCC
Q 024996 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYS 258 (259)
Q Consensus 223 ~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~-~~~~ 258 (259)
..++.+.+++.|+|||+..+++.++++.|.+. |+++
T Consensus 156 ~~~~~l~~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~ 192 (249)
T PRK06136 156 VNWSALADGADTLVIYMGVRNLPYIAAQLLAAGRAPD 192 (249)
T ss_pred cCHHHHhCCCCeEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 24678888889999999999999999999987 7544
No 6
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=100.00 E-value=1.5e-32 Score=247.41 Aligned_cols=176 Identities=18% Similarity=0.237 Sum_probs=146.4
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~ 158 (259)
.+|+||+||+||||||+||+||+++|++||+|+++++.....+++.+..+++.+.......++..+.+.+.+++|++||+
T Consensus 6 ~~~~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~g~~Vv~ 85 (257)
T PRK15473 6 DPRCVWFVGAGPGDKELITLKGYRLLQQAQVVIYAGSLINTELLDYCPAQAECHDSAELHLEQIIDLMEAGVKAGKTVVR 85 (257)
T ss_pred CCCEEEEEEeCCCChHHhhHHHHHHHHhCCEEEEecccCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 45899999999999999999999999999999998666666777766655544432234556778888888889999999
Q ss_pred EecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------ceEEEEeecCCCcc---hHHHHHhhh
Q 024996 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARS---RTERLMLSA 229 (259)
Q Consensus 159 Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~------~~~~vg~lp~~~~~---~~~~L~~l~ 229 (259)
|+ +|||++||++.++++.+.+.++++|++|||||+++|+|++|+||+ ++.++ +.|+.. ..+.|..++
T Consensus 86 L~-sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~v~---s~hG~~~~~~~~~l~~~~ 161 (257)
T PRK15473 86 LQ-TGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAAELGVEYTVPEVSQSLIIT---RMEGRTPVPAREQLESFA 161 (257)
T ss_pred Ee-CcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHHHcCCCcccccccccEEEE---eecCCCCCCchhhHHHHh
Confidence 95 999999999999999999999999999999999999999999996 55554 233321 124688888
Q ss_pred CCCCeEEEEcCcccHHHHHHHHHHh-hCCC
Q 024996 230 NEVKTQIFYVPPHKLLQFLEETSLL-FGYS 258 (259)
Q Consensus 230 ~~~~TlVl~~~~~~l~~il~~L~e~-~~~~ 258 (259)
+.+.++|||++.++++++++.|.+. ++++
T Consensus 162 ~~~~t~vi~~~~~~~~~i~~~L~~~g~~~~ 191 (257)
T PRK15473 162 SHQTSMAIFLSVQRIHRVAERLIAGGYPAT 191 (257)
T ss_pred cCCCeEEEECCchhHHHHHHHHHHcCCCCC
Confidence 9899999999999999999999986 6543
No 7
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=100.00 E-value=2.1e-32 Score=240.89 Aligned_cols=175 Identities=22% Similarity=0.279 Sum_probs=143.3
Q ss_pred EEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 024996 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDA 162 (259)
Q Consensus 83 l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~ 162 (259)
||+||+|||||++||+||+++|++||+|+|++++.+.++++.+..+.+.+......+++..+.+.+.+++|++|++| .+
T Consensus 1 v~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~L-~~ 79 (229)
T TIGR01465 1 VYFIGAGPGDPDLITVKGRKLLESADVILYAGSLVPPELLAWCRPGAEVVNSAGMSLEEIVDIMSDAHREGKLVVRL-HT 79 (229)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhCCCCCEEEEcCCCCHHHHHHHHHHHHHCCCeEEEE-eC
Confidence 68999999999999999999999999999987666677777666555555433345677788888888999999999 59
Q ss_pred CCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcce---EEEEeecCCCcc---hHHHHHhhhCCCCeEE
Q 024996 163 GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARS---RTERLMLSANEVKTQI 236 (259)
Q Consensus 163 GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~---~~vg~lp~~~~~---~~~~L~~l~~~~~TlV 236 (259)
|||++|+++.++++.+++.|+++++||||||+++++|++|+||+.. ..+-+.+.|+.. ..+.+..+++.+.+++
T Consensus 80 GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~v 159 (229)
T TIGR01465 80 GDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTPMPEGEKLADLAKHGATMA 159 (229)
T ss_pred cCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHHHcCCCccccCCccEEEEEeccCCCCCCChHHHHHHhcCCCeEE
Confidence 9999999999999999999999999999999999999999999521 111122334321 2346888888889999
Q ss_pred EEcCcccHHHHHHHHHHh-hCCC
Q 024996 237 FYVPPHKLLQFLEETSLL-FGYS 258 (259)
Q Consensus 237 l~~~~~~l~~il~~L~e~-~~~~ 258 (259)
+|++++++.++.+.|.+. ++++
T Consensus 160 i~~~~~~~~~i~~~L~~~g~~~~ 182 (229)
T TIGR01465 160 IFLSAHILDKVVKELIEGGYSED 182 (229)
T ss_pred EECcHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999988 6643
No 8
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=100.00 E-value=4.7e-32 Score=244.93 Aligned_cols=180 Identities=23% Similarity=0.277 Sum_probs=146.7
Q ss_pred cCCCCCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecC------CCCHHHHHHHH
Q 024996 73 SSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTV 146 (259)
Q Consensus 73 ~~~~~~~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~------~~~~~~~~~~I 146 (259)
|++...|+|+||+||+|||||++||++|+++|++||+|+++. +.++++++.+..+++.+.+. ....++..+.+
T Consensus 7 ~~~~~~~~g~l~vVG~GpGdp~~LTl~a~~~l~~ADvI~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 85 (263)
T PLN02625 7 QLPELEGPGNVFLVGTGPGDPDLLTLKALRLLQTADVVLYDR-LVSPDILDLVPPGAELLYVGKRGGYHSRTQEEIHELL 85 (263)
T ss_pred CCCCCCCCCEEEEEEeCCCChHHhHHHHHHHHhcCCEEEEeC-cCCHHHHHhcCCCCEEEecCCcCCccccCHHHHHHHH
Confidence 345556889999999999999999999999999999999975 45677887766555444221 12345566777
Q ss_pred HHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc------eEEEEeecCCCcc
Q 024996 147 LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE------FTFVGFLPKHARS 220 (259)
Q Consensus 147 ~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~------~~~vg~lp~~~~~ 220 (259)
.+.+.+|++|+++ ++|||++|+++.++++.+++.|+++++||||||+++|+|++|+||++ +.+ +|.|++.
T Consensus 86 ~~~~~~g~~Vvvl-~~GDP~~ys~~~~l~~~l~~~~~~veiiPGISS~~aaaA~lg~pl~~~~~~~~~~i---~s~h~~~ 161 (263)
T PLN02625 86 LSFAEAGKTVVRL-KGGDPLVFGRGGEEMDALRKNGIPVTVVPGITAAIGAPAELGIPLTHRGVATSVRF---LTGHDRE 161 (263)
T ss_pred HHHHHCCCeEEEE-cCCCchhhhhHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCccceEEE---EecccCC
Confidence 7888889999999 69999999999999999999999999999999999999999999984 444 4666543
Q ss_pred ----hHHHHHhhhCCCCeEEEEcCcccHHHHHHHHHHh-hCC
Q 024996 221 ----RTERLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGY 257 (259)
Q Consensus 221 ----~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~-~~~ 257 (259)
....++.+.+.+.|+|||++.+++.++++.|.+. +++
T Consensus 162 ~~~~~~~~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~ 203 (263)
T PLN02625 162 GGTDPLDVAEAAADPDTTLVVYMGLGTLPSLAEKLIAAGLPP 203 (263)
T ss_pred CcccchhhHHHHhCCCCeEEEECchhhHHHHHHHHHHcCCCC
Confidence 1234667777888999999999999999999886 554
No 9
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=100.00 E-value=9.9e-32 Score=237.40 Aligned_cols=172 Identities=24% Similarity=0.348 Sum_probs=140.7
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEec------CCCCHHHHHHHHHHHHhCCCe
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQGEI 155 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~I~e~l~~G~~ 155 (259)
+||+||+|||||++||+||+++|++||+|+++ .+.++++++.++.+.+.+.. .....++..+.+.+.+++|++
T Consensus 1 ~i~iVG~GpG~~~~lT~~a~~~l~~advI~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 79 (236)
T TIGR01469 1 KVYLVGAGPGDPELLTLKALRLLQEADVVLYD-ALVSPEILAYAPPQAELIDVGKRPGCHSKKQEEINRLLVELAREGKK 79 (236)
T ss_pred CEEEEecCCCChHHhHHHHHHHHHhCCEEEEe-CCCCHHHHhhCCCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCe
Confidence 58999999999999999999999999999995 56677787776655444432 111235556667788889999
Q ss_pred EEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc------eEEEEeecCCCcchH---HHHH
Q 024996 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE------FTFVGFLPKHARSRT---ERLM 226 (259)
Q Consensus 156 Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~------~~~vg~lp~~~~~~~---~~L~ 226 (259)
|+++ ++|||++|+++.++++++++.++++++||||||+|+|+|++|+||++ +.++ +.|+++.. ..++
T Consensus 80 V~~l-~~GDP~~~~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~~~i~---~~~~~~~~~~~~~~~ 155 (236)
T TIGR01469 80 VVRL-KGGDPFVFGRGGEEAEALAEAGIPFEVVPGVTSAIAAAAYAGIPLTHRGVASSVTFV---TGHEADDKALEVDWE 155 (236)
T ss_pred EEEE-eCcCcccccCHHHHHHHHHHCCCCEEEECCccHHHHHHHHcCCCcccCCCcceEEEE---EcccCCCcccccCHH
Confidence 9999 69999999999999999999899999999999999999999999983 5554 55554211 1378
Q ss_pred hhhCCCCeEEEEcCcccHHHHHHHHHHh-hCCC
Q 024996 227 LSANEVKTQIFYVPPHKLLQFLEETSLL-FGYS 258 (259)
Q Consensus 227 ~l~~~~~TlVl~~~~~~l~~il~~L~e~-~~~~ 258 (259)
.+.+.+.|+|+|++.+++.++++.|.+. |+++
T Consensus 156 ~~~~~~~~~vl~~~~~~~~~i~~~L~~~g~~~~ 188 (236)
T TIGR01469 156 ALAKGAGTLVIYMGVRNLPEIAKELIEHGRSPD 188 (236)
T ss_pred HHhcCCCeEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 8888889999999999999999999887 6543
No 10
>PRK15478 cbiH cobalt-precorrin-3B C(17)-methyltransferase; Provisional
Probab=99.97 E-value=1e-30 Score=233.93 Aligned_cols=174 Identities=21% Similarity=0.271 Sum_probs=138.1
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~ 161 (259)
+||+||+||||||+||+||+++|++||+|++++++ .+++..+..+++++...+..+.+..+.+++.+++|++|++| .
T Consensus 1 ml~~VG~GPGdp~lLTlrA~~~L~~ADvVv~~~~~--~~lv~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~g~~Vv~L-~ 77 (241)
T PRK15478 1 MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTY--THLVKAFTGDKQVIKTGMCKEIERCQAAIELAQAGHNVALI-S 77 (241)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHcCCEEEEcCcH--HHHHHhhcCCCEEEECCCchHHHHHHHHHHHHHCCCeEEEE-E
Confidence 48999999999999999999999999999997643 46676666666676665545556667778888999999999 5
Q ss_pred CCCCCCCchHHHHHHHhhhCC--CCEEEEccchHHHHHHHhCCCCC-cceEEEEee--cCCCcchHHHHHhhhCCCCeEE
Q 024996 162 AGTPGISDPGTELAKLCVDEK--IPVVPIPGASAFVAALSASGLAT-DEFTFVGFL--PKHARSRTERLMLSANEVKTQI 236 (259)
Q Consensus 162 ~GDP~i~s~~~~Lv~~l~~~g--i~vevIPGISS~~aaaA~~Gipl-~~~~~vg~l--p~~~~~~~~~L~~l~~~~~TlV 236 (259)
+|||++|+.+.++.+.+.+.+ +++++||||||+++|+|++|+|| .++.+.++- -..+...++.+..+.+...|+|
T Consensus 78 sGDP~~~g~~~~~~~~l~~~~~~~~veviPGiSs~~aaaa~~g~plt~~~~~~s~~~~~~~~~~~~~~~~a~~~~~~tlv 157 (241)
T PRK15478 78 SGDAGIYGMAGLVLELVSKQKLDVEVRLIPGMTASIAAASLLGAPLMHDFCHISLSDLLTPWPVIEKRIVAAGEADFVIC 157 (241)
T ss_pred CCCCCcchhHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHhCCCcccCcceeecccCCCCcHHHHHhHHHHhcCCeEEE
Confidence 999999999999999987765 56999999999999999999998 567666541 1223223346777788889999
Q ss_pred EEcCccc-----HHHHHHHHHHhhCCC
Q 024996 237 FYVPPHK-----LLQFLEETSLLFGYS 258 (259)
Q Consensus 237 l~~~~~~-----l~~il~~L~e~~~~~ 258 (259)
|||+.++ +.++.+.+.+.+|+|
T Consensus 158 lym~~~~~~~~~l~~~~~ll~~g~~~~ 184 (241)
T PRK15478 158 FYNPRSRGREGHLARAFDLLAASKSAQ 184 (241)
T ss_pred EECCcccccHHHHHHHHHHHHccCCCC
Confidence 9999876 555556666667654
No 11
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=99.97 E-value=1.1e-30 Score=233.48 Aligned_cols=172 Identities=22% Similarity=0.207 Sum_probs=135.4
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCC-----CHHHHhhc-CCCCcEE--ecCCCCH--------HHHH
Q 024996 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYY-NIKTPLL--SYHKFNE--------SQRE 143 (259)
Q Consensus 80 ~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~-----~~~ll~~~-~~~~~~i--~~~~~~~--------~~~~ 143 (259)
+|+||+||+||||||+||+||+++|++||+|++|.... +.++++.+ ..+.+++ .|++... ++.+
T Consensus 3 ~g~ly~VGvGPGdp~LlTlkA~~~L~~advi~~p~~~~~~~s~a~~i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~~~ 82 (238)
T PRK05948 3 LGTLYGISVGPGDPELITLKGLRLLQSAPVVAFPAGLAGQPGLAEQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQAAA 82 (238)
T ss_pred CCEEEEEEecCCChHHhHHHHHHHHhhCCEEEEeCCCCCchhHHHHHHHHHcCCCcEEEEecCCccCChHHHHHHHHHHH
Confidence 58999999999999999999999999999999986432 23445533 3344443 3444322 2345
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhh--CCCCEEEEccchHHHHHHHhCCCCCcc-eEEEEeecCCCcc
Q 024996 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLATDE-FTFVGFLPKHARS 220 (259)
Q Consensus 144 ~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~--~gi~vevIPGISS~~aaaA~~Gipl~~-~~~vg~lp~~~~~ 220 (259)
+.+.+.+++|++|+++ ..|||++||++.++.+.+++ .|+++|+||||||+++++|++|+||+. ..-+.++|.|.+
T Consensus 83 ~~i~~~~~~g~~v~~l-~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIss~~a~aa~~g~pL~~~~e~l~ii~~~~~- 160 (238)
T PRK05948 83 DQVWHYLEQGEDVAFA-CEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVCSPLAAAAALGIPLTLGSQRLAILPALYH- 160 (238)
T ss_pred HHHHHHHHcCCeEEEE-eCCChHHHHHHHHHHHHHHhcCCCCCEEEECChhHHHHHHHHhCCCeecCCCeEEEEcCCCC-
Confidence 6778888999999999 59999999999999999987 489999999999999999999999982 223335587754
Q ss_pred hHHHHHhhhCCCCeEEEEcCcccHHHHHHHHHHh
Q 024996 221 RTERLMLSANEVKTQIFYVPPHKLLQFLEETSLL 254 (259)
Q Consensus 221 ~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~ 254 (259)
.+.++..++..+++|+|+..+.++++.+.|.+.
T Consensus 161 -~~~l~~~l~~~~~vVlmk~~~~~~~i~~~L~~~ 193 (238)
T PRK05948 161 -LEELEQALTWADVVVLMKVSSVYPQVWQWLKAR 193 (238)
T ss_pred -HHHHHHHHhCCCEEEEEECCccHHHHHHHHHhC
Confidence 345666667788999999887889999998865
No 12
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=99.97 E-value=8.4e-31 Score=234.88 Aligned_cols=175 Identities=23% Similarity=0.296 Sum_probs=136.6
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls 160 (259)
|+||+||+|||||++||+||+++|++||+|++++++ .+++..+..+++.+..++..+....+.+++.+++|++|+++
T Consensus 2 g~v~iVG~GpGdp~~lT~ra~~~L~~AdvV~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~Vv~l- 78 (246)
T PRK05765 2 GKLYIVGIGPGSKEQRTIKAQEAIEKSNVIIGYNTY--LRLISDLLDGKEVIGARMKEEIFRANTAIEKALEGNIVALV- 78 (246)
T ss_pred CEEEEEEcCCCChHHhhHHHHHHHHhCCEEEEccCH--HHHHHHhcCCCEEecCCchHHHHHHHHHHHHHHCCCcEEEE-
Confidence 789999999999999999999999999999997653 35555554455555444322223345677888899999999
Q ss_pred cCCCCCCCchHHHHHHHhhhCCC--CEEEEccchHHHHHHHhCCCCCc-ceEEEEeec--CCCcchHHHHHhhhCCCCeE
Q 024996 161 DAGTPGISDPGTELAKLCVDEKI--PVVPIPGASAFVAALSASGLATD-EFTFVGFLP--KHARSRTERLMLSANEVKTQ 235 (259)
Q Consensus 161 ~~GDP~i~s~~~~Lv~~l~~~gi--~vevIPGISS~~aaaA~~Gipl~-~~~~vg~lp--~~~~~~~~~L~~l~~~~~Tl 235 (259)
.+|||++||++.++++.+.+.|+ ++++||||||+++|+|++|+||+ ++.+++.-. ....+....|+.+.+...++
T Consensus 79 ~~GDP~i~~~~~~~~~~l~~~~~~~~veviPGiSs~~aa~a~~g~pl~~~~~~~s~~~~~~p~~~~~~~l~~~~~~~~~i 158 (246)
T PRK05765 79 SSGDPQVYGMAGLVFELISRRKLDVDVEVIPGVTAALAAAARLGSPLSLDFVVISLSDLLIPREEILHRVTKAAEADFVI 158 (246)
T ss_pred eCCCchhhhhHHHHHHHHHhcCCCCCEEEeCCHHHHHHHHHHhCCCCcCCcEEEEcCCCCCChHHHHHHHHHHhcCCeEE
Confidence 58999999999999999998876 79999999999999999999996 888774311 11111223566777888999
Q ss_pred EEEcC--cccHHHHHHHHHHhhCCC
Q 024996 236 IFYVP--PHKLLQFLEETSLLFGYS 258 (259)
Q Consensus 236 Vl~~~--~~~l~~il~~L~e~~~~~ 258 (259)
++|++ .+++.++++.|.+.||++
T Consensus 159 vly~~~~~~~~~~~~~~l~~~~~~~ 183 (246)
T PRK05765 159 VFYNPINENLLIEVMDIVSKHRKPN 183 (246)
T ss_pred EEEcccchhHHHHHHHHHHhcCCCC
Confidence 99997 456888888888777754
No 13
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=99.97 E-value=2.1e-30 Score=229.17 Aligned_cols=171 Identities=27% Similarity=0.327 Sum_probs=136.2
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCC-----CHHHHhhcCC--CCcEE--ecCCCC--------HHHHH
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYYNI--KTPLL--SYHKFN--------ESQRE 143 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~-----~~~ll~~~~~--~~~~i--~~~~~~--------~~~~~ 143 (259)
|+||+||+|||||++||++|+++|++||+|++++... ..+++..+.. +.+++ .+++.. .++..
T Consensus 1 ~~i~iVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (230)
T TIGR01467 1 GKLYGVGVGPGDPELITVKALEALRSADVIAVPASKKGRESLARKIVEDYLKPNDTRILELVFPMTKDRDELEKAWDEAA 80 (230)
T ss_pred CEEEEEEecCCCcHHHHHHHHHHHhhCCEEEEeCCCCCCcchHHHHHHHhcCccCceEEEEeccccCChHHHHHHHHHHH
Confidence 5799999999999999999999999999999976432 2334443322 13332 233211 13455
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc-eEEEEeecCCCcchH
Q 024996 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE-FTFVGFLPKHARSRT 222 (259)
Q Consensus 144 ~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~-~~~vg~lp~~~~~~~ 222 (259)
+.+.+.+++|++|+++ .+|||++|+++.++++.+.+.|+++++||||||+++|+|++|++|++ +.++++++.|.. .
T Consensus 81 ~~i~~~~~~g~~Vv~l-~~GDP~~y~~~~~l~~~~~~~~~~veviPGiSs~~~a~a~~g~~l~~~~~~~~~~~~~~~--~ 157 (230)
T TIGR01467 81 EAVAAELEEGRDVAFL-TLGDPSLYSTFSYLLQRLQGMGIEVEVVPGITSFAACASAAGLPLVEGDESLAILPATAG--E 157 (230)
T ss_pred HHHHHHHHCCCcEEEE-eCCCCCcccCHHHHHHHHHHCCCcEEEeCChhHHHHHHHHhCCCcccCCceEEEEeCCCC--H
Confidence 6677788889999999 59999999999999999998899999999999999999999999986 566667777753 3
Q ss_pred HHHHhhhCCCCeEEEEcCcccHHHHHHHHHHh
Q 024996 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLL 254 (259)
Q Consensus 223 ~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~ 254 (259)
+.+...++.++++|+|+.+++.+++++.|.+.
T Consensus 158 ~~~~~~~~~~~~vvil~~~~~~~~i~~~L~~~ 189 (230)
T TIGR01467 158 AELEKALAEFDTVVLMKVGRNLPQIKEALAKL 189 (230)
T ss_pred HHHHHHhccCCeEEEEecCCCHHHHHHHHHHc
Confidence 45777788889999999999999999888764
No 14
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=99.97 E-value=1.2e-30 Score=225.39 Aligned_cols=172 Identities=23% Similarity=0.277 Sum_probs=134.3
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhc-CC----CCcEEecCCCCHHHHHHHH--HHHHhCCC
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY-NI----KTPLLSYHKFNESQREQTV--LNRLKQGE 154 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~-~~----~~~~i~~~~~~~~~~~~~I--~e~l~~G~ 154 (259)
+||+||+|||||++||++|+++|++||+|+++. +. .+.+..+ .. ....... ....++..+.+ .+.+++|+
T Consensus 1 ~l~iVG~GpG~~~~lT~~a~~~l~~advv~~~~-r~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~g~ 77 (210)
T PF00590_consen 1 KLYIVGLGPGDPDLLTLRALEALKNADVVIGPE-RA-LEIVRDLLPEIFPMGKDRESL-EESYDEIAEIIEAIEAAKEGK 77 (210)
T ss_dssp EEEEEEEBSSSGGGSBHHHHHHHHHSSEEEEET-TC-HHHHHHHHHTEETTSSEEEEE-HHHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCcccccc-cc-hHHHHhhccccccccccccch-hhhhhHHHHHHHHHHHHhccC
Confidence 699999999999999999999999999999976 44 3444332 11 1111111 11235566777 78889999
Q ss_pred eEEEEecCCCCCCCchHHHHHHHhhh--CCCCEEEEccchHHHHHHHhCCCCCcceEEEEeec--CCCcchHHHHHhhhC
Q 024996 155 IVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLATDEFTFVGFLP--KHARSRTERLMLSAN 230 (259)
Q Consensus 155 ~Vv~Ls~~GDP~i~s~~~~Lv~~l~~--~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp--~~~~~~~~~L~~l~~ 230 (259)
+|+++ .+|||++|+++.++++.+++ .|++++++|||||+++++|++|+||+++.++.... .........+..+.+
T Consensus 78 ~V~~l-~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 156 (210)
T PF00590_consen 78 DVVVL-VSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLGIPLTDGGFISLHGLRDLDTEREKLLENLLA 156 (210)
T ss_dssp EEEEE-ESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCTSTSSBTTTBEEEETSSSSHHHHHHHHHHHT
T ss_pred CEEEe-CCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHcCCcccCcEEEEEEecccccchHHHHHHHHh
Confidence 99999 49999999999999999998 99999999999999999999999999764332222 222234567889999
Q ss_pred CCCeEEEEcCcccHHHHHHHHHHh-hCC
Q 024996 231 EVKTQIFYVPPHKLLQFLEETSLL-FGY 257 (259)
Q Consensus 231 ~~~TlVl~~~~~~l~~il~~L~e~-~~~ 257 (259)
.+.|+|+|+.++++.++++.|.+. +++
T Consensus 157 ~~~~~vil~~~~~~~~i~~~L~~~~~~~ 184 (210)
T PF00590_consen 157 NGDTLVILTDPRRLAEIAELLLERLYPP 184 (210)
T ss_dssp TTSEEEEEESGCCHHHHHHHHHHHSHTT
T ss_pred CCCEEEEEccCchHHHHHHHHHhhCCCC
Confidence 999999999999999999999998 554
No 15
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=99.97 E-value=2.8e-30 Score=230.92 Aligned_cols=171 Identities=19% Similarity=0.157 Sum_probs=127.9
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCC----CHHHHh-hcCCCCcEE--ecCCCC----------H---
Q 024996 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH----SGKLLQ-YYNIKTPLL--SYHKFN----------E--- 139 (259)
Q Consensus 80 ~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~----~~~ll~-~~~~~~~~i--~~~~~~----------~--- 139 (259)
+|+||+||+||||||+||+||+++|++||+|+++.... +.++++ .+..+.+++ .+++.. +
T Consensus 2 ~g~l~~VG~GPGdp~LlTlkA~~~L~~advi~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~pm~~~~~~~~~~~~~~~~ 81 (241)
T PRK05990 2 KGRLIGLGVGPGDPELLTLKALRLLQAAPVVAYFVAKGKKGNAFGIVEAHLSPGQTLLPLVYPVTTEILPPPLCYETVIA 81 (241)
T ss_pred CceEEEEeCCCCChHHhhHHHHHHHhhCCEEEEECCCCCcchHHHHHHHHcCCCceEEEeecCCccccccccchhhhHHH
Confidence 48999999999999999999999999999999974321 235665 333333332 333311 1
Q ss_pred ---HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc-ceEEEEeec
Q 024996 140 ---SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLP 215 (259)
Q Consensus 140 ---~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~-~~~~vg~lp 215 (259)
++.++.|.+.+++|++|++| ..|||++||++.++.+.+++ ++++||||||||+++++|++|+||+ +...+.++|
T Consensus 82 ~~~~~~~~~i~~~~~~G~~Vv~L-~~GDP~iyst~~~l~~~l~~-~i~~evIPGISS~~aaaA~~gipL~~~~~~~~i~~ 159 (241)
T PRK05990 82 DFYDTSAEAVAAHLDAGRDVAVI-CEGDPFFYGSYMYLHDRLAP-RYETEVIPGVCSMLGCWSVLGAPLVYRNQSLSVLS 159 (241)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEE-eCCCcHHHhHHHHHHHHHhc-CCCEEEECcHHHHHHHHHHhCCCeEcCCeEEEEEc
Confidence 34556788889999999999 59999999999999998854 7999999999999999999999996 233344556
Q ss_pred CCCcchHHHHHhhhCCCCeEEEEcCcccHHHHHHHHHHh
Q 024996 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLL 254 (259)
Q Consensus 216 ~~~~~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~ 254 (259)
.+... .+.++.+. ..++.|+|+..++++++.+.|.+.
T Consensus 160 ~~~~~-~~l~~~l~-~~~~~vv~k~~~~~~~i~~~L~~~ 196 (241)
T PRK05990 160 GVLPE-EELRRRLA-DADAAVIMKLGRNLDKVRRVLAAL 196 (241)
T ss_pred CCCCh-HHHHHHHh-CCCCEEEEEeCCcHHHHHHHHHHc
Confidence 65432 23334444 445556666668999999999876
No 16
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=99.97 E-value=2.3e-30 Score=251.35 Aligned_cols=174 Identities=25% Similarity=0.303 Sum_probs=140.4
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCC------CCHHHHHHHHHHHHhC
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQ 152 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~------~~~~~~~~~I~e~l~~ 152 (259)
|.|+||+||+||||||+||+||+++|++||+|+| ++..++.+++..+.+.+.+.... ..++++.+.+++++++
T Consensus 1 m~G~V~lVGaGPGdp~LLTlrA~~~L~~ADVVvy-drlv~~~~l~~~~~~~~~i~~gk~~~~~~~~qe~i~~~l~~~a~~ 79 (474)
T PRK07168 1 MNGYVYLVGAGPGDEGLITKKAIECLKRADIVLY-DRLLNPFFLSYTKQTCELMYCGKMPKNHIMRQEMINAHLLQFAKE 79 (474)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhCCEEEE-eCcCCHHHHhhcCCCcEEEeccCcCCCccccHHHHHHHHHHHHhC
Confidence 4589999999999999999999999999999999 55666666665554555443211 2345566678888899
Q ss_pred CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------ceEEEEeecCCCcch---HH
Q 024996 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR---TE 223 (259)
Q Consensus 153 G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~------~~~~vg~lp~~~~~~---~~ 223 (259)
|++|++| ++|||++||++.++++.+.+.|+++||||||||+++|+|++|+||+ ++.+ ++.|.... ..
T Consensus 80 Gk~VvrL-~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~v---iT~h~~~~~~~~~ 155 (474)
T PRK07168 80 GKIVVRL-KGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTL---LTGHAKGPLTDHG 155 (474)
T ss_pred CCEEEEE-eCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEE---EccCcCCccccch
Confidence 9999999 6999999999999999999999999999999999999999999996 3443 47775421 23
Q ss_pred HHHhhhCCCCeEEEEcCcccHHHHHHHHHHh-hCCC
Q 024996 224 RLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYS 258 (259)
Q Consensus 224 ~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~-~~~~ 258 (259)
+|..+. ..+|+||||+.++++++++.|.++ ++++
T Consensus 156 ~~~~l~-~~~tlV~lm~~~~l~~I~~~L~~~G~~~~ 190 (474)
T PRK07168 156 KYNSSH-NSDTIAYYMGIKNLPTICENLRQAGKKED 190 (474)
T ss_pred hHHHhc-CCCeEEEEcChhhHHHHHHHHHHcCcCCC
Confidence 455554 567999999999999999999987 5543
No 17
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=99.97 E-value=3e-30 Score=228.84 Aligned_cols=172 Identities=22% Similarity=0.274 Sum_probs=137.1
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCC----CCHHHHhhcCC-CCcE--EecCCCCH---------HHHH
Q 024996 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTR----HSGKLLQYYNI-KTPL--LSYHKFNE---------SQRE 143 (259)
Q Consensus 80 ~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~----~~~~ll~~~~~-~~~~--i~~~~~~~---------~~~~ 143 (259)
++++|+||+||||||+||+||+++|++||+|++|.+. .++.+++.+-. +... +.|++..+ ++.+
T Consensus 1 ~~klygVGvGPGDPeLlTlkAi~~L~~adVi~~P~~~g~~slAr~Iv~~y~~~~~~~~~l~fPm~~~~~e~~~~~~~e~a 80 (234)
T COG2243 1 MGKLYGVGLGPGDPELLTLKAIRALKKADVVYVPSKKGKGSLAREIVEDYLTPGSRIVELHFPMTTDMREELEDAWEEAA 80 (234)
T ss_pred CCeEEEEecCCCChhhhhHHHHHHHhhCCEEEEecCCCccchHHHHHHHhcCCCceeeEEEeccCCchHHHHHHHHHHHH
Confidence 4799999999999999999999999999999998322 24566665543 3222 23444222 3456
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc-eEEEEeecCCCcchH
Q 024996 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE-FTFVGFLPKHARSRT 222 (259)
Q Consensus 144 ~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~-~~~vg~lp~~~~~~~ 222 (259)
++|.+++.+|++|+|++ .|||+|||++.+|.++++..|+++|+||||||+++++|++|+|+.. -..+.++|.... .
T Consensus 81 ~~va~~l~~G~~VAf~~-lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS~~a~aa~~~~pL~~g~~~l~Vlp~t~~--~ 157 (234)
T COG2243 81 AEVAAELEAGRDVAFLT-LGDPTFYSTFMYLLERLRERGFEVEVVPGVSSFSACAARLGVPLVEGDDSLSVLPATRP--D 157 (234)
T ss_pred HHHHHHHHcCCeEEEEE-ccCccHHHHHHHHHHHhhccCCceEEeCCcchHHHHHHHhCCceeccCceeEEEeccCc--h
Confidence 67888899999999996 9999999999999999999999999999999999999999999973 233345576653 3
Q ss_pred HHHHhhhCCCCeEEEEcCcccHHHHHHHHHHh
Q 024996 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLL 254 (259)
Q Consensus 223 ~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~ 254 (259)
..++..+...+++|+|+.+++.+++.+.|...
T Consensus 158 ~~~~~~l~~~d~~VvMK~~~~~~~i~~~l~~~ 189 (234)
T COG2243 158 EELERALADFDTAVVMKVGRNFEKLRRLLAKL 189 (234)
T ss_pred hhHHhHHhhCCeEEEEecCCcHHHHHHHHHhc
Confidence 56677777899999999999888887775544
No 18
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=99.97 E-value=4.6e-30 Score=233.66 Aligned_cols=176 Identities=43% Similarity=0.588 Sum_probs=167.6
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~ 161 (259)
++|+|++..||.++||.||+++|++||+|+|+|+|++.+++..+++.++.+.++.+++.+..+.+++.+++|++|+++||
T Consensus 1 mLyvv~TPIGNl~Dit~Ral~~L~~~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l~~g~~valvSD 80 (276)
T TIGR00096 1 LLYVVTTPIGNLEDITRRALELLACVDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKLEIGNNIAVSSD 80 (276)
T ss_pred CEEEECCCCcCHHHHhHHHHHHHHhCCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHHHcCCcEEEEec
Confidence 48999999999999999999999999999999999999999999998888889989988888999999999999999999
Q ss_pred CCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhhhCCCCeEEEEcCc
Q 024996 162 AGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPP 241 (259)
Q Consensus 162 ~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~TlVl~~~~ 241 (259)
+|.|++.|+|..|++.+++.|++|.++||+|++.+|.+..|++-+.|.|.||+|.+...|.+.++.+.+...|+|+|+++
T Consensus 81 AG~P~ISDPG~~LV~~~~~~~i~v~~ipG~sA~~~Al~~SG~~~~~f~F~GFlp~k~~~r~~~l~~l~~~~~t~ifyEsp 160 (276)
T TIGR00096 81 AGPPLISDPGHLLVACREKANIIVVPLPGAAALTAALCASGPATDRFFFGGFLPKKSKRRQALKAYIAEERTTVFFYESH 160 (276)
T ss_pred CCCCCcCCccHHHHHHHHHCCCeEEcCChHHHHHHHHHhcCCCCCceEEeeeCCCChHHHHHHHHHHhCCCCeEEEEECc
Confidence 99999999999999999999999999999999999999999999999999999988877788899999999999999999
Q ss_pred ccHHHHHHHHHHhhCC
Q 024996 242 HKLLQFLEETSLLFGY 257 (259)
Q Consensus 242 ~~l~~il~~L~e~~~~ 257 (259)
|++.++++.+.+.+|+
T Consensus 161 ~Rl~~~L~~l~~~~g~ 176 (276)
T TIGR00096 161 HRLLTTLTDLNVFLGS 176 (276)
T ss_pred HhHHHHHHHHHHhcCC
Confidence 9999999999888774
No 19
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=99.97 E-value=1.8e-29 Score=223.49 Aligned_cols=171 Identities=19% Similarity=0.273 Sum_probs=131.7
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCC-----HHHHhhc-CCCCcEEe--cCCC-CH-------HHHH
Q 024996 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS-----GKLLQYY-NIKTPLLS--YHKF-NE-------SQRE 143 (259)
Q Consensus 80 ~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~-----~~ll~~~-~~~~~~i~--~~~~-~~-------~~~~ 143 (259)
||+||+||+|||||++||+||+++|++||+|++++++.. .+++..+ +.+++++. +++. +. ++..
T Consensus 1 m~~l~vVG~GpG~~~~lT~~a~~~l~~advV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (229)
T PRK05576 1 MGKLYGIGLGPGDPELLTVKAARILEEADVVYAPASRKGGGSLALNIVRPYLKEETEIVELHFPMSKDEEEKEAVWKENA 80 (229)
T ss_pred CCEEEEEEeCCCChHHHHHHHHHHHhcCCEEEEECCCCCchhHHHHHHHHhcCCCCEEEEeeCCCCCChHHHHHHHHHHH
Confidence 379999999999999999999999999999999854332 2334433 23333332 2221 11 2455
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc-ceEEEEeecCCCcchH
Q 024996 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHARSRT 222 (259)
Q Consensus 144 ~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~-~~~~vg~lp~~~~~~~ 222 (259)
+.+.+.+.+|++|+++ .+|||++|+++.++++.+++.|+++++||||||+++|+|++|+||+ .+..+.++|.|. .
T Consensus 81 ~~i~~~~~~g~~V~~l-~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiSs~~~a~a~~g~~l~~~~~~~~iis~~~---~ 156 (229)
T PRK05576 81 EEIAAEAEEGKNVAFI-TLGDPNLYSTFSHLLEYLKCHDIEVETVPGISSFTAIASRAGVPLAMGDESLAIIPATR---E 156 (229)
T ss_pred HHHHHHHHcCCcEEEE-eCcCccccccHHHHHHHHHhCCCCEEEeCChhHHHHHHHHcCCCcccCCceEEEEECCC---H
Confidence 6777778899999999 5999999999999999998889999999999999999999999999 222233447664 3
Q ss_pred HHHHhhhCCCCeEEEEcCcccHHHHHHHHHHh
Q 024996 223 ERLMLSANEVKTQIFYVPPHKLLQFLEETSLL 254 (259)
Q Consensus 223 ~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~ 254 (259)
+.+...++.++++|||+..++..++.+.|.+.
T Consensus 157 ~~l~~~l~~~~~~vl~~~~~~~~~i~~~l~~~ 188 (229)
T PRK05576 157 ALIEQALTDFDSVVLMKVYKNFALIEELLEEG 188 (229)
T ss_pred HHHHHHhhcCCEEEEEecCCCHHHHHHHHHhc
Confidence 45666667789999999888888877776653
No 20
>PRK10637 cysG siroheme synthase; Provisional
Probab=99.96 E-value=6e-29 Score=240.60 Aligned_cols=175 Identities=19% Similarity=0.235 Sum_probs=141.0
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEec------CCCCHHHHHHHHHHHHh
Q 024996 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLK 151 (259)
Q Consensus 78 ~~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~I~e~l~ 151 (259)
..+|+||+||+|||||++||+||+++|++||+|+++ .+....+++.+....+.+.. +...+++..+.+.+.+.
T Consensus 213 ~~~g~l~iVG~GpGdp~lLTl~A~~~L~~ADvV~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 291 (457)
T PRK10637 213 DHRGEVVLVGAGPGDAGLLTLKGLQQIQQADVVVYD-RLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQ 291 (457)
T ss_pred CCCcEEEEEEeCCCChHHHHHHHHHHHHcCCEEEEC-CCCCHHHHhhcccCCEEEEcCCCCCCCCcCHHHHHHHHHHHHh
Confidence 357999999999999999999999999999999994 56666666554444333321 12345667788888889
Q ss_pred CCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceE---EEEeecCCCcch-HHHHHh
Q 024996 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFT---FVGFLPKHARSR-TERLML 227 (259)
Q Consensus 152 ~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~---~vg~lp~~~~~~-~~~L~~ 227 (259)
+|++|++|+ +|||++||++.++++++.+.|+++++||||||+++|+|++|+||+... -+.+++.|++.. ...+..
T Consensus 292 ~G~~Vv~L~-sGDP~~yg~~~~l~~~l~~~gi~vevVPGISS~~aAaA~~g~pl~~~~~~~~~~vis~h~~~~~~~~~~~ 370 (457)
T PRK10637 292 KGKRVVRLK-GGDPFIFGRGGEELETLCNAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELDWEN 370 (457)
T ss_pred CCCEEEEEe-CCCccccccHHHHHHHHHhCCCCEEEECCHhHHHHHHHHcCCCcccCCceeeEEEEeCccCCCCccCHHH
Confidence 999999995 999999999999999999889999999999999999999999995321 112346775421 224677
Q ss_pred hhCCCCeEEEEcCcccHHHHHHHHHHh
Q 024996 228 SANEVKTQIFYVPPHKLLQFLEETSLL 254 (259)
Q Consensus 228 l~~~~~TlVl~~~~~~l~~il~~L~e~ 254 (259)
+.+.+.|+|+||+.+++.++.+.|.+.
T Consensus 371 l~~~~~t~Vl~~~~~~~~~i~~~L~~~ 397 (457)
T PRK10637 371 LAAEKQTLVFYMGLNQAATIQQKLIEH 397 (457)
T ss_pred HhCCCCeEEEECCHhhHHHHHHHHHhc
Confidence 788899999999999999999999865
No 21
>TIGR01466 cobJ_cbiH precorrin-3B C17-methyltransferase. This model represents precorrin-3B C17-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, EC 2.1.1.133). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products. Members of this family may appear as fusion proteins with other enzymes of cobalamin biosynthesis.
Probab=99.96 E-value=6.8e-29 Score=220.48 Aligned_cols=170 Identities=22% Similarity=0.224 Sum_probs=132.9
Q ss_pred EEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecC
Q 024996 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDA 162 (259)
Q Consensus 83 l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~ 162 (259)
||+||+|||||++||++|+++|++||+|+++++ ..++++.+..+++++.+++....+..+.+.+.+.+|++|+++ ..
T Consensus 1 l~iVG~GpG~~~~lT~~A~~~i~~AdvV~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vv~l-~~ 77 (239)
T TIGR01466 1 LYVVGIGPGAEELMTPEAKEALAEADVIVGYKT--YLDLIEDLIPGKEVVTSGMREEIARAELAIELAAEGRTVALV-SS 77 (239)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHhCCEEEECcc--HHHHHHhhCCCCEEEeCCChHHHHHHHHHHHHHhCCCCEEEE-ec
Confidence 689999999999999999999999999999753 245666555455555555443344556667777889999999 59
Q ss_pred CCCCCCchHHHHHHHhhhCC--CCEEEEccchHHHHHHHhCCCCC-cceEEEEeecCCC-----cchHHHHHhhhCCCCe
Q 024996 163 GTPGISDPGTELAKLCVDEK--IPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKHA-----RSRTERLMLSANEVKT 234 (259)
Q Consensus 163 GDP~i~s~~~~Lv~~l~~~g--i~vevIPGISS~~aaaA~~Gipl-~~~~~vg~lp~~~-----~~~~~~L~~l~~~~~T 234 (259)
|||++|+.+.++++.+++.+ ++++++|||||+++|+|++|+|| +++.++ +.|+ ....+.+..+.+.+.+
T Consensus 78 GDP~~~~~~~~l~~~l~~~~~~~~v~viPGiSS~~aa~a~~g~p~~~~~~~i---s~~~~~~~~~~~~~~l~~~~~~~~~ 154 (239)
T TIGR01466 78 GDPGIYGMAALVFEALEKKGAEVDIEVIPGITAASAAASLLGAPLGHDFCVI---SLSDLLTPWPEIEKRLRAAAEADFV 154 (239)
T ss_pred CCCcccccHHHHHHHHHhcCCCCCEEEeCCccHHHHHHHHcCCCcccccEEE---ECCCCCCCchHHHHHHHHHhCCCcE
Confidence 99999999999999998764 69999999999999999999999 787776 3343 1112345556666788
Q ss_pred EEEEcCc-----ccHHHHHHHHHHhhCCC
Q 024996 235 QIFYVPP-----HKLLQFLEETSLLFGYS 258 (259)
Q Consensus 235 lVl~~~~-----~~l~~il~~L~e~~~~~ 258 (259)
+++|+.. +++.++.+.|.+.++.|
T Consensus 155 ~vl~~~~~~~~~~~~~~i~~~L~~~~~~~ 183 (239)
T TIGR01466 155 IAIYNPRSKRRPEQFRRAMEILLEHRKPD 183 (239)
T ss_pred EEEECCcccchhhhHHHHHHHHHhcCCCC
Confidence 9999874 37889988888876643
No 22
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=99.96 E-value=5.5e-29 Score=219.06 Aligned_cols=176 Identities=23% Similarity=0.272 Sum_probs=148.3
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~ 158 (259)
|.|+||+||+|||+++++|.+|.++|++||+|++..++. ++++ +..+++++..++..+-+++++.++.+++|++|++
T Consensus 1 ~~G~L~VVGiGPG~~~~mT~~A~~al~~ad~ivGY~~Y~--d~i~-l~~~k~v~~s~m~~Ei~Ra~~AielA~~G~~Val 77 (249)
T COG1010 1 MTGKLYVVGIGPGDPELMTPEARRALEEADVIVGYTTYL--DLIE-LRPGKEVIRSGMREEIERAKEAIELAAEGRDVAL 77 (249)
T ss_pred CCceEEEEEeCCCChhhCCHHHHHHHHhCCEEEecHHHH--HHHh-cCCCCEEEeCCcHhHHHHHHHHHHHHhcCCeEEE
Confidence 569999999999999999999999999999999987665 5566 6667888877777777888999999999999999
Q ss_pred EecCCCCCCCchHHHHHHHhhhC---CCCEEEEccchHHHHHHHhCCCCCc-ceEEEEe--ecCCCcchHHHHHhhhCCC
Q 024996 159 ISDAGTPGISDPGTELAKLCVDE---KIPVVPIPGASAFVAALSASGLATD-EFTFVGF--LPKHARSRTERLMLSANEV 232 (259)
Q Consensus 159 Ls~~GDP~i~s~~~~Lv~~l~~~---gi~vevIPGISS~~aaaA~~Gipl~-~~~~vg~--lp~~~~~~~~~L~~l~~~~ 232 (259)
+| +|||.+|+-..-.++.+.+. +++|+|+||||+.++++|++|-|+. ||+.++. +-.+|...++.+...++.+
T Consensus 78 VS-sGDpgVYgMA~lv~E~~~~~~~~~v~veVvPGvTA~~aaAa~lGAPL~hDF~~ISLSDlLtPwe~IekRl~aAA~ad 156 (249)
T COG1010 78 VS-SGDPGVYGMAGLVLEAAEEEGWYDVDVEVVPGVTAALAAAARLGAPLGHDFCVISLSDLLTPWEVIEKRLRAAAEAD 156 (249)
T ss_pred Ee-CCCccHHHhHHHHHHHHHhcCCCCccEEEeCChHHHHHHHHHhCCCcccceEEEEhHhcCCcHHHHHHHHHHHhhCC
Confidence 97 99999999988888887765 4999999999999999999999994 8998843 2224444567888899999
Q ss_pred CeEEEEcCcc-----cHHHHHHHHHHhhCCC
Q 024996 233 KTQIFYVPPH-----KLLQFLEETSLLFGYS 258 (259)
Q Consensus 233 ~TlVl~~~~~-----~l~~il~~L~e~~~~~ 258 (259)
.+++||++.+ ++.+.++-|.++-+++
T Consensus 157 fVi~~YNP~s~~R~~~~~~a~eil~~~r~~~ 187 (249)
T COG1010 157 FVIALYNPISKRRPEQLGRAFEILREHRSPD 187 (249)
T ss_pred EEEEEECCccccchHHHHHHHHHHHHhcCCC
Confidence 9999999854 4577777777776543
No 23
>PRK05787 cobalt-precorrin-6Y C(5)-methyltransferase; Validated
Probab=99.96 E-value=5.5e-28 Score=210.03 Aligned_cols=163 Identities=21% Similarity=0.195 Sum_probs=121.4
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcC-CCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN-IKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~-~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls 160 (259)
+||+||+|||||++||+||+++|++||+|++++ +. .+++..+. .++.++.. ..++..+.+. .+.+|++|+++
T Consensus 1 ~l~vVG~GpG~~~~lT~~a~~~l~~advv~~~~-~~-~~~~~~~~~~~~~~~~~---~~~~~~~~i~-~~~~g~~V~~l- 73 (210)
T PRK05787 1 MIYIVGIGPGDPEYLTLKALEAIRKADVVVGSK-RV-LELFPELIDGEAFVLTA---GLRDLLEWLE-LAAKGKNVVVL- 73 (210)
T ss_pred CEEEEEeCCCChHHhhHHHHHHHHhCCEEEEcH-hH-HHHHHHhccCccEEecC---CHHHHHHHHH-HhhCCCcEEEE-
Confidence 489999999999999999999999999999964 32 34444333 23333322 2234445444 56789999999
Q ss_pred cCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcch-HHHHHhhhCCCCeEEEEc
Q 024996 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSR-TERLMLSANEVKTQIFYV 239 (259)
Q Consensus 161 ~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~-~~~L~~l~~~~~TlVl~~ 239 (259)
.+|||++||.+..+.+.+. .++++++||||||+++++|++|+||+++.++ +.|+++. .+.+..+++.+.++++|+
T Consensus 74 ~~GDP~~~~~~~~~~~~~~-~~~~veviPGiSs~~aaaa~~g~~l~~~~~i---s~~~~~~~~~~l~~~~~~~~~~v~l~ 149 (210)
T PRK05787 74 STGDPLFSGLGKLLKVRRA-VAEDVEVIPGISSVQYAAARLGIDMNDVVFT---TSHGRGPNFEELEDLLKNGRKVIMLP 149 (210)
T ss_pred ecCCccccccHHHHHHHhc-cCCCeEEEcCHHHHHHHHHHhCCCHHHcEEE---eecCCCcchHHHHHHHHcCCeEEEEc
Confidence 4999999997777766543 3489999999999999999999999998877 3444321 134666676677777777
Q ss_pred C-cccHHHHHHHHHHhh
Q 024996 240 P-PHKLLQFLEETSLLF 255 (259)
Q Consensus 240 ~-~~~l~~il~~L~e~~ 255 (259)
. .+++.++.+.|.+..
T Consensus 150 ~~~~~~~~i~~~L~~~g 166 (210)
T PRK05787 150 DPRFGPKEIAAELLERG 166 (210)
T ss_pred CCCCCHHHHHHHHHhCC
Confidence 4 457999999998765
No 24
>PRK05991 precorrin-3B C17-methyltransferase; Provisional
Probab=99.96 E-value=1.1e-27 Score=214.95 Aligned_cols=171 Identities=19% Similarity=0.270 Sum_probs=124.4
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHH--HHHHHHHHHhCCCeE
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQ--REQTVLNRLKQGEIV 156 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~--~~~~I~e~l~~G~~V 156 (259)
|+|+||+||+|||||++||++|+++|++||+|+++. ++++.+............+.++ ....+++.+.+|++|
T Consensus 1 m~~~l~iVG~GpG~p~~lT~~a~~~l~~AdvV~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V 75 (250)
T PRK05991 1 MSGRLFVIGTGPGNPEQMTPEALAAVEAATDFFGYG-----PYLDRLPLRADQLRHASDNREELDRAGAALAMAAAGANV 75 (250)
T ss_pred CCceEEEEEeCCCChhhhhHHHHHHHHhCCEEEEcH-----HHHHhhhccccccccCCCCHHHHHHHHHHHHHHHCCCeE
Confidence 568999999999999999999999999999999964 2344332211111112222222 222345566789999
Q ss_pred EEEecCCCCCCCchHHHHHHHhhh-----CCCCEEEEccchHHHHHHHhCCCCCc-ceEEEEeecCCCcc-----hHHHH
Q 024996 157 ALISDAGTPGISDPGTELAKLCVD-----EKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHARS-----RTERL 225 (259)
Q Consensus 157 v~Ls~~GDP~i~s~~~~Lv~~l~~-----~gi~vevIPGISS~~aaaA~~Gipl~-~~~~vg~lp~~~~~-----~~~~L 225 (259)
++++ .|||++|+++.++.+.+++ .|+++++||||||+++|+|++|+||+ ++.++ +.|... ..+.+
T Consensus 76 v~l~-~GDP~~~~~~~~l~~~~~~g~~~~~~~~v~vvPGISS~~aa~a~~g~p~~~~~~~~---s~~~~~~~~~~l~~~l 151 (250)
T PRK05991 76 CVVS-GGDPGVFAMAAAVCEAIENGPAAWRAVDLTIVPGVTAMLAVAARIGAPLGHDFCAI---SLSDNLKPWELIEKRL 151 (250)
T ss_pred EEEe-CCCchhhhhHHHHHHHHHhcccccCCceEEEECChHHHHHHHHHhCCCCCCCCEEe---ecccCCCCHHHHHHHH
Confidence 9995 9999999999999999875 36899999999999999999999994 77776 444311 12345
Q ss_pred HhhhCCCCeEEEEcCc-----ccHHHHHHHHHHhhCCC
Q 024996 226 MLSANEVKTQIFYVPP-----HKLLQFLEETSLLFGYS 258 (259)
Q Consensus 226 ~~l~~~~~TlVl~~~~-----~~l~~il~~L~e~~~~~ 258 (259)
....+.+.++|||++. +++.+.++.|.+.++++
T Consensus 152 ~~~~~~~~~~vl~~~~~~~~p~~l~~~~~~L~~~~~~~ 189 (250)
T PRK05991 152 RLAAEAGFVIALYNPISRARPWQLGEAFDLLREHLPAT 189 (250)
T ss_pred HhhcCCCeEEEEECCccccchhhHHHHHHHHHhcCCCC
Confidence 5555678899999653 36677778888776543
No 25
>PRK08284 precorrin 6A synthase; Provisional
Probab=99.95 E-value=2.2e-27 Score=213.92 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=115.9
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCC--------HHHHhhcC--CCCcEEecC--CCCH---------
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN--IKTPLLSYH--KFNE--------- 139 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~--------~~ll~~~~--~~~~~i~~~--~~~~--------- 139 (259)
.+||+||+||||||+||+||+++|++||+|++|++... .++++.+. .+.+++.++ +.+.
T Consensus 2 ~kly~VGvGPGDPeLLTlkA~r~L~~advV~~p~~~~~~~~la~~a~~iv~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~ 81 (253)
T PRK08284 2 RRLLLIGIGAGDPDHLTLQAIKALNRADVFFVPDKGADKDDLVALRREICARHITGPGYRVVEFDDPVRDRAPDDYRAAV 81 (253)
T ss_pred cEEEEEEecCCChhHhhHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhcCCCceEEecCCCCcccchhhhhhhh
Confidence 47999999999999999999999999999999865322 33444332 234444432 2111
Q ss_pred --------HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhC---CCCEEEEccchHHHHHHHhCCCCCcce
Q 024996 140 --------SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE---KIPVVPIPGASAFVAALSASGLATDEF 208 (259)
Q Consensus 140 --------~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~---gi~vevIPGISS~~aaaA~~Gipl~~~ 208 (259)
+.+.+.|.+.+++|++|+++ ..|||++|+++.++++.+++. |+++|+||||||+++++|++|+||++.
T Consensus 82 ~~~~~~~~~~~~~~i~~~l~~g~~Vv~l-~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~lg~pl~~~ 160 (253)
T PRK08284 82 DDWHAARAALYERLIAEELPDGGTGAFL-VWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARHRIPLNRI 160 (253)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcEEEE-eCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHcCCChhcC
Confidence 11245688888999999999 599999999999999999864 899999999999999999999999865
Q ss_pred E-EEEeecCCCcchHHHHHh-hhCCCCeEEEEcCccc
Q 024996 209 T-FVGFLPKHARSRTERLML-SANEVKTQIFYVPPHK 243 (259)
Q Consensus 209 ~-~vg~lp~~~~~~~~~L~~-l~~~~~TlVl~~~~~~ 243 (259)
. -+.++|.+. +.. +.+..+++|+|+.+++
T Consensus 161 ~~~l~ii~g~~------l~~~l~~~~~~vvv~k~~~~ 191 (253)
T PRK08284 161 GEPVHITTGRR------LAEGWPAGVDNVVVMLDGEC 191 (253)
T ss_pred CceEEEEecCc------hHHHHHhcCCcEEEEECCcC
Confidence 2 122335442 222 3355677888877663
No 26
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.95 E-value=4.8e-27 Score=204.33 Aligned_cols=162 Identities=21% Similarity=0.243 Sum_probs=119.6
Q ss_pred EEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhc-CCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecCC
Q 024996 85 LVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY-NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAG 163 (259)
Q Consensus 85 iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~-~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~G 163 (259)
|||+|||||++||+||+++|++||+|+++. +.. +.+..+ +.+...+.. ..+.++..+.+.+.++ |++|++++ +|
T Consensus 1 iVG~GpG~~~~lT~~a~~~L~~advv~~~~-~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~-g~~vv~l~-~G 75 (204)
T TIGR02467 1 VVGIGPGGPELLTPAAIEAIRKADLVVGGE-RHL-ELLAELIGEKREIILT-YKDLDELLEFIAATRK-EKRVVVLA-SG 75 (204)
T ss_pred CEEeCCCChhhcCHHHHHHHHhCCEEEech-hhH-HHHhhhcCCceEeccC-cCCHHHHHHHHHHhcC-CCCEEEEe-cC
Confidence 699999999999999999999999999963 333 334333 222222211 2345667777777666 89999995 99
Q ss_pred CCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcchHH-HHHhhhCCCCeEEEEcCc-
Q 024996 164 TPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTE-RLMLSANEVKTQIFYVPP- 241 (259)
Q Consensus 164 DP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~-~L~~l~~~~~TlVl~~~~- 241 (259)
||++|+++.++++.+.+ .++++||||||+++++|++|+||+++.++++ |++.... .++.+.. ..++++|+..
T Consensus 76 DP~~~~~~~~l~~~~~~--~~v~iiPGiSs~~~a~a~~g~~l~~~~~is~---~~~~~~~~~~~~l~~-~~~~vvl~~~~ 149 (204)
T TIGR02467 76 DPLFYGIGRTLAERLGK--ERLEIIPGISSVQYAFARLGLPWQDAVVISL---HGRELDELLLALLRG-HRKVAVLTDPR 149 (204)
T ss_pred CCcccccHHHHHHhCCC--CcEEEeCChHHHHHHHHHcCCChhhCeEEEe---eCCCCcHHHHHHHhc-CCcEEEEeCCC
Confidence 99999999999998865 3799999999999999999999999988744 3332112 3444444 4555555554
Q ss_pred ccHHHHHHHHHHh-hCC
Q 024996 242 HKLLQFLEETSLL-FGY 257 (259)
Q Consensus 242 ~~l~~il~~L~e~-~~~ 257 (259)
++..++.+.|.+. +++
T Consensus 150 ~~~~~i~~~L~~~g~~~ 166 (204)
T TIGR02467 150 NGPAEIARELIELGIGG 166 (204)
T ss_pred CCHHHHHHHHHHCCCCC
Confidence 6799999998876 443
No 27
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=99.95 E-value=8.6e-27 Score=209.66 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=117.0
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCC--------HHHHhhcC--CCCcEEe--cCCCC-H---------
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYN--IKTPLLS--YHKFN-E--------- 139 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~--------~~ll~~~~--~~~~~i~--~~~~~-~--------- 139 (259)
+||+||+||||||+||+||+++|++||+|+++.+... .++++.+. .+.+++. +++.. .
T Consensus 2 ~l~~VG~GPGDPeLLTlkA~r~L~~AdvV~~p~~~~~~~~l~~~a~~i~~~~~~~~~~~i~~~~~pm~~~~~~~y~~~~~ 81 (249)
T TIGR02434 2 TILLIGIGAGDPEQLTLQAVDALNHADVFFVLDKGEQKSDLVALRREICARYVTAPGYRIVEVDDPERDAGADDYRAAVD 81 (249)
T ss_pred EEEEEEeCCCChHHhHHHHHHHHHhCCEEEEECCCCCchhHHHHHHHHHHHHhCCCCcEEEEecCCCcCCccchhhhhHH
Confidence 7999999999999999999999999999999754322 23343222 2333433 23321 0
Q ss_pred -------HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhh---CCCCEEEEccchHHHHHHHhCCCCCcceE
Q 024996 140 -------SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD---EKIPVVPIPGASAFVAALSASGLATDEFT 209 (259)
Q Consensus 140 -------~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~---~gi~vevIPGISS~~aaaA~~Gipl~~~~ 209 (259)
++.++.|.+.+++|++||++ .+|||++|+++.++.+.+.+ .+++++|||||||+++++|++|+||++..
T Consensus 82 ~~~~~~~~~~a~~i~~~~~~g~~Vv~L-~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~lg~pl~~~~ 160 (249)
T TIGR02434 82 DWHAQRADIWAQAIAEELGDDGTGAFL-VWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARHRIPLNRIG 160 (249)
T ss_pred HhhhhHHHHHHHHHHHHHhCCCcEEEE-eCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHhCCCcccCC
Confidence 13466788889999999999 59999999999999999886 47899999999999999999999999642
Q ss_pred --EEEeecCCCcchHHHHHhh-hCCCCeEEEEcCccc-HHHH
Q 024996 210 --FVGFLPKHARSRTERLMLS-ANEVKTQIFYVPPHK-LLQF 247 (259)
Q Consensus 210 --~vg~lp~~~~~~~~~L~~l-~~~~~TlVl~~~~~~-l~~i 247 (259)
+. +++.+ .+... +..++++|+|+..++ ..++
T Consensus 161 ~~l~-v~~g~------~l~~~~l~~~~~~vilk~~~~~~~~l 195 (249)
T TIGR02434 161 EPVQ-ITTGR------RLAEGGFPEGDTVVVMLDGEQAFQRV 195 (249)
T ss_pred ceEE-EEecc------chhhccccCCCeEEEEECCccCHHHh
Confidence 22 23433 12223 456788889888777 4443
No 28
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=99.94 E-value=2.7e-26 Score=207.12 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=114.7
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCC------HHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCe
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS------GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~------~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~ 155 (259)
+||+||+|||||++||+||+++|++||+|+++. +.+ .+.+..+. +++.........++..+.+++.+++ ++
T Consensus 1 ~l~~VG~GPGd~~llTl~a~~~L~~advV~~~~-~~s~l~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~ii~~~~~-~~ 77 (257)
T TIGR00522 1 MLYLIGLGLYDENDISVKGLEAIKKADEVYAEF-YTSKLLGSSIEEIEEFF-GKRVVVLERSDVEENSFRLIERAKS-KD 77 (257)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEec-cchhhccccHHHHHHHh-CCcccccCHHHHHHHHHHHHHHhcC-CC
Confidence 489999999999999999999999999999963 222 11222221 2222211111112345677777754 88
Q ss_pred EEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcce---EEEEeecCCCcch---HHHHHhhh
Q 024996 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARSR---TERLMLSA 229 (259)
Q Consensus 156 Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~---~~vg~lp~~~~~~---~~~L~~l~ 229 (259)
|++++ +|||++|+++.++++++++.|++++|||||||+++|++++|++++.+ .-+.+.+.|++.. ...++++.
T Consensus 78 Vv~l~-~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~~aaaa~~g~~lt~~g~~~~v~~~s~~~~~~~~~~~~~~~l~ 156 (257)
T TIGR00522 78 VALLV-AGDPMVATTHTDLKLEAKRKGIETRIIHGASISSAVCGLTGLQLYKFGKTATIVFFTDNYRPQTPYNVIKENRK 156 (257)
T ss_pred EEEEE-CCcCcccCCHHHHHHHHHHCCCeEEEECcHhHHHHHHHHcCCCcccCCCcEEEEEecCCcCCCCHHHHHHHHHh
Confidence 99994 99999999999999999999999999999999999999999999953 2233456676421 24577777
Q ss_pred CCCCeEEEEc
Q 024996 230 NEVKTQIFYV 239 (259)
Q Consensus 230 ~~~~TlVl~~ 239 (259)
+...|+|||+
T Consensus 157 ~~~~Tlvll~ 166 (257)
T TIGR00522 157 IGLHTLVLLD 166 (257)
T ss_pred cCCCcEEEEe
Confidence 7788999994
No 29
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=99.93 E-value=4e-25 Score=193.66 Aligned_cols=160 Identities=20% Similarity=0.222 Sum_probs=119.4
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCC--CCcEEecCCCCHHHHHHHHHHHHhCCCeEEEE
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI--KTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~--~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~L 159 (259)
+|++||+||||+++||.+|+++|++||+|++.+ + .++.+.. +++.+.+......+..+.+.+..+ |++|++|
T Consensus 1 ~I~vVGiGp~~~~~Lt~~A~~~I~~A~vV~G~k-r----~L~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~-g~~v~VL 74 (210)
T COG2241 1 MITVVGIGPGGPEGLTLAAIEAIRRADVVAGSK-R----HLELLPPLIKAERIIWPYPFDAESLEEILAERK-GRDVVVL 74 (210)
T ss_pred CEEEEEeCCCChhhhcHHHHHHHHhCCEEeecH-H----HHHhhhccccceEEEeccccchHHHHHHHHHhC-CCCeEEE
Confidence 589999999999999999999999999999964 2 3443332 234444433222334455544433 8999999
Q ss_pred ecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhhhCCCCeEEEEc
Q 024996 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYV 239 (259)
Q Consensus 160 s~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~TlVl~~ 239 (259)
.+|||++||.+..+.+.+.. -+++|||||||+|+|+|++|++|+++.++ +.|++. .+.+..+...+..+++..
T Consensus 75 -asGDP~f~G~g~~l~~~~~~--~~v~iIPgiSS~q~a~ARlg~~~~~~~~i---slHgr~-~~~l~~~~~~~~~~vil~ 147 (210)
T COG2241 75 -ASGDPLFSGVGRLLRRKFSC--EEVEIIPGISSVQLAAARLGWPLQDTEVI---SLHGRP-VELLRPLLENGRRLVILT 147 (210)
T ss_pred -ecCCcchhhhHHHHHHhcCc--cceEEecChhHHHHHHHHhCCChHHeEEE---EecCCC-HHHHHHHHhCCceEEEeC
Confidence 59999999999999888765 47999999999999999999999999988 556542 456666666666666665
Q ss_pred Cccc-HHHHHHHHHHh
Q 024996 240 PPHK-LLQFLEETSLL 254 (259)
Q Consensus 240 ~~~~-l~~il~~L~e~ 254 (259)
+... ..++.+.|.+.
T Consensus 148 ~~~~~P~~IA~~L~~~ 163 (210)
T COG2241 148 PDDFGPAEIAKLLTEN 163 (210)
T ss_pred CCCCCHHHHHHHHHhC
Confidence 5443 66676666665
No 30
>PTZ00175 diphthine synthase; Provisional
Probab=99.93 E-value=9.5e-25 Score=198.51 Aligned_cols=151 Identities=23% Similarity=0.291 Sum_probs=113.9
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCC------HHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCe
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS------GKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~------~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~ 155 (259)
+||+||+|||||++||+||+++|++||+|+++. +++ .+.+..+- +++.+..+....++..+.+++.++ +++
T Consensus 2 mlylVG~GpGdp~lLTlkal~~L~~ADvV~~d~-~ts~l~~~~~~~l~~~~-gk~~~~~~r~~~e~~~~~ii~~a~-~~~ 78 (270)
T PTZ00175 2 MLYIIGLGLGDEKDITVKGLEAVKSADVVYLES-YTSILINSNKEKLEEFY-GKPVIEADREMVEEGCDEILEEAK-EKN 78 (270)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCEEEEec-ccchhccCCHHHHHHhc-CCeeEecCccCHHHHHHHHHHHhC-CCC
Confidence 699999999999999999999999999999964 322 12222221 233333333333344566777776 688
Q ss_pred EEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcce---EEEEeecCCCcch---HHHHHhhh
Q 024996 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARSR---TERLMLSA 229 (259)
Q Consensus 156 Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~---~~vg~lp~~~~~~---~~~L~~l~ 229 (259)
|+++ +.|||++|+++.+++.++++.|+++++|||+|+++++ +.+|++.+.| .-+.|.+.|+... ...++++.
T Consensus 79 Vv~L-~~GDP~i~~t~~~l~~~~~~~gi~vevIPGvSi~sA~-~~~Gl~~~~fg~~~sv~~~t~~~~~~s~~~~i~~n~~ 156 (270)
T PTZ00175 79 VAFL-VVGDPFCATTHTDLYLRAKKKGIEVEVIHNASIMNAI-GCTGLQLYRFGETVSIPFFTETWKPDSFYDKIKANRD 156 (270)
T ss_pred EEEE-ECCCCCccCCHHHHHHHHHHCCCcEEEECCcCHHHHH-hhcCCCcCCCCceEEEEEEeCCCCCCChhHHHHHHHH
Confidence 9999 5999999999999999999999999999999977666 7799999865 1223456665421 23678888
Q ss_pred CCCCeEEE
Q 024996 230 NEVKTQIF 237 (259)
Q Consensus 230 ~~~~TlVl 237 (259)
....|+|+
T Consensus 157 ~glhTl~l 164 (270)
T PTZ00175 157 NGLHTLCL 164 (270)
T ss_pred cCCceEEE
Confidence 88999999
No 31
>PRK04160 diphthine synthase; Provisional
Probab=99.93 E-value=2e-24 Score=194.56 Aligned_cols=153 Identities=22% Similarity=0.259 Sum_probs=104.8
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCC------HHHHhhcCCCCcEEecCCCCHHHHHHHHH-HHHhCCC
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS------GKLLQYYNIKTPLLSYHKFNESQREQTVL-NRLKQGE 154 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~------~~ll~~~~~~~~~i~~~~~~~~~~~~~I~-e~l~~G~ 154 (259)
+||+||+||||||+||+||+++|++||+|++++. .+ .+.+..+. ..+.+.......++..+.++ +..+ ++
T Consensus 1 ~l~vVG~GpG~pd~lT~~a~~~L~~advv~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 77 (258)
T PRK04160 1 MLYFIGLGLYDERDITLKGLEALRNADKVYAEFY-TSILMGTTIEKLEELI-GKEIIVLDREDVEQESEKIILEEAK-EK 77 (258)
T ss_pred CEEEEECCCCChhhhCHHHHHHHHcCCEEEEecc-cCccccccHHHHHHHh-CCceeecCHHHHHHHHHHHHHHHHc-CC
Confidence 4899999999999999999999999999999642 21 12222221 12222221112233445454 4444 58
Q ss_pred eEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceE---EEEeecCCC---cchHHHHHhh
Q 024996 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFT---FVGFLPKHA---RSRTERLMLS 228 (259)
Q Consensus 155 ~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~---~vg~lp~~~---~~~~~~L~~l 228 (259)
+|++++ +|||++|+++.++++.+++.|+++++||||||+++|+|++|++.+.+- -+.+...+. ......++.+
T Consensus 78 ~Vv~L~-sGDP~~ys~~~~l~~~l~~~~~~veviPGISS~~aaaa~~g~~~~~~g~~~s~~~~~~~~~~~~~~~~i~~~~ 156 (258)
T PRK04160 78 NVAFLT-AGDPMVATTHVDLRLEAKKRGIEVRVIHGVSIYSAAISLTGLQNYKFGKSVTVPFPYGNFFPESPYDVIKDNL 156 (258)
T ss_pred CEEEEe-CCCCccccCHHHHHHHHHHCCCcEEEECChhHHHHHHHHhCCCcccCCceEEEccCcCCcCCCCHHHHHHHHH
Confidence 999994 999999999999999999999999999999999999999999977641 110101111 0112234555
Q ss_pred hCCCCeEEEE
Q 024996 229 ANEVKTQIFY 238 (259)
Q Consensus 229 ~~~~~TlVl~ 238 (259)
.+...+++++
T Consensus 157 ~~~~~~~vll 166 (258)
T PRK04160 157 ERGLHTLVLL 166 (258)
T ss_pred hcCCCcEEEE
Confidence 5666788886
No 32
>KOG1527 consensus Uroporphyrin III methyltransferase [Coenzyme transport and metabolism]
Probab=99.91 E-value=2.8e-24 Score=198.27 Aligned_cols=174 Identities=22% Similarity=0.295 Sum_probs=143.7
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCC------CCHHHHHHHHHHHHhCCC
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQGE 154 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~------~~~~~~~~~I~e~l~~G~ 154 (259)
|.||+||.|||+|++||++|+++|++||++++ |+.++..+++.+.++.+.+.... ..+++.-+...+.+.+|.
T Consensus 256 G~i~LvGsGPGsp~lLT~~A~~~I~sAD~~La-DkLVp~avL~Lipp~t~lfia~KfpGna~raQ~Elh~~~l~~l~~G~ 334 (506)
T KOG1527|consen 256 GDIYLVGSGPGSPELLTLKAVRVIQSADLLLA-DKLVPNAVLELIPPDTRLFIAGKFPGNASRAQEELHELLLNFLEAGA 334 (506)
T ss_pred CcEEEEccCCCChhheeHHHHHHHhhcceehh-hhcccHHHHhhcCCCCceEEeecCCCchhHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999999 67899999999888877654322 234667777889999999
Q ss_pred eEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcc--e--EEEEeecCCCcchHHHHHhhhC
Q 024996 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE--F--TFVGFLPKHARSRTERLMLSAN 230 (259)
Q Consensus 155 ~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~--~--~~vg~lp~~~~~~~~~L~~l~~ 230 (259)
.||+| +.|||.+||+|.+....+++.|+...|||||||..++++.+|||++. + .++ +.+++++...-......-
T Consensus 335 ~VVRL-KqGDPyifGRGGEE~~Ff~qhGy~p~ViPGIssal~~~~~agIP~ThRgvAdqvl-~cTGtgrKG~~p~ip~fv 412 (506)
T KOG1527|consen 335 TVVRL-KQGDPYIFGRGGEEMDFFQQHGYRPQVIPGISSALGIAAEAGIPLTHRGVADQVL-FCTGTGRKGGTPAIPAFV 412 (506)
T ss_pred EEEEe-cCCCceeecCCchhhhhHHhCCceeEeccchhhhhhhhHhcCCCcccccccceEE-EEeccCCCCCCCCccccC
Confidence 99999 89999999999999999999999999999999999999999999983 1 222 345555421111222334
Q ss_pred CCCeEEEEcCcccHHHHHHHHHHh-hCC
Q 024996 231 EVKTQIFYVPPHKLLQFLEETSLL-FGY 257 (259)
Q Consensus 231 ~~~TlVl~~~~~~l~~il~~L~e~-~~~ 257 (259)
...|.|+||+-++++-+...|+++ .|.
T Consensus 413 p~~TtVflMaLhrl~~L~q~L~~hGwp~ 440 (506)
T KOG1527|consen 413 PDTTTVFLMALHRLPSLAQKLMDHGWPS 440 (506)
T ss_pred CCceeEeeehhcchHHHHHHHHhcCCCC
Confidence 578999999999999999999998 454
No 33
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.5e-16 Score=141.50 Aligned_cols=122 Identities=29% Similarity=0.354 Sum_probs=98.9
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCH-------HHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCC
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG-------KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~-------~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~ 154 (259)
++|+||.|+.|...||+++++++++||.||.+ .+++. ++-+.+ +++++..+..+-++..+.|++.++++
T Consensus 1 mL~lVGlGL~d~~diTl~gleavr~~d~Vy~E-~YTS~~~~~~~e~le~~~--gkev~~~~R~dlE~~~~~il~~a~~~- 76 (260)
T COG1798 1 MLYLVGLGLYDEGDITLKGLEAVRKADRVYAE-FYTSILLGSNLEKLEELI--GKEVILLDREDLEENSRSILDRAKDK- 76 (260)
T ss_pred CeEEEEeccCccCceeHHHHHHHHhCCEEEEE-eeecccccchHHHHHHHh--CCceEeccHHHHhhcchhHHHHHhcC-
Confidence 58999999999999999999999999999995 45532 222222 35565544322233345688887765
Q ss_pred eEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcce
Q 024996 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF 208 (259)
Q Consensus 155 ~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~ 208 (259)
+|+++ +.|||++..++.+|.-+++++|++++||||+|.++|++.++|+..+.|
T Consensus 77 ~Vall-~~GDpmvATTH~~L~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkF 129 (260)
T COG1798 77 DVALL-VAGDPMVATTHVDLRIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKF 129 (260)
T ss_pred CEEEE-ecCCcceehhHHHHHHHHHHcCCcEEEEcccHHHHHHhhhhhhheecc
Confidence 69999 599999999999999999999999999999999999999999998876
No 34
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=99.31 E-value=3.5e-11 Score=111.64 Aligned_cols=168 Identities=13% Similarity=0.135 Sum_probs=117.4
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCc-EEecCC----CCH-----HHHHHHHHH
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-LLSYHK----FNE-----SQREQTVLN 148 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~-~i~~~~----~~~-----~~~~~~I~e 148 (259)
|.++|++||+|+|+.+.||+.-+++|+++|-++. +++.++ +++.+..... +-.|+. +.+ +.++..+.+
T Consensus 1 mah~ItvVGLG~g~~d~L~lGi~k~lknqd~ly~-RTkdHP-viE~l~~e~~~f~~fD~iYE~heqFe~VYd~I~~~Lve 78 (488)
T COG3956 1 MAHTITVVGLGAGDKDQLTLGIYKLLKNQDNLYV-RTKDHP-VIEELDEEGIKFSFFDDIYETHEQFEAVYDFIAADLVE 78 (488)
T ss_pred CCceEEEEeeCCCchhhcchHHHHHHhccceEEE-ecCCCc-hHHHHHhhcceeeehhHHHhhhhhHHHHHHHHHHHHHH
Confidence 6689999999999999999999999999999999 555544 4444332222 222221 221 456677888
Q ss_pred HHhCCCeEEEEecCCCCCCCchHHHH-HHHhhhCCCCEEEEccchHHHHHHHhCCCCCc-ceEEEEeecCCCcchHHHHH
Q 024996 149 RLKQGEIVALISDAGTPGISDPGTEL-AKLCVDEKIPVVPIPGASAFVAALSASGLATD-EFTFVGFLPKHARSRTERLM 226 (259)
Q Consensus 149 ~l~~G~~Vv~Ls~~GDP~i~s~~~~L-v~~l~~~gi~vevIPGISS~~aaaA~~Gipl~-~~~~vg~lp~~~~~~~~~L~ 226 (259)
++++ +.+++. ++|.|++......| ++++.+.+|.|.|.+|.|.+.+.+..+.+++. .|.++.- . ..-.
T Consensus 79 aAke-kdIvYA-VPGHP~VAEktVqlL~e~~ek~ni~Vkilgg~SFiD~~fealkiDPveG~q~vDa---~-----~l~~ 148 (488)
T COG3956 79 AAKE-KDIVYA-VPGHPLVAEKTVQLLIEACEKENIKVKILGGQSFIDALFEALKIDPVEGFQIVDA---T-----DLSN 148 (488)
T ss_pred hhcc-cceEEe-cCCCchhHHHHHHHHHHHHhccCceEEEeCcchhHHHHHHHhcCCcccCceEecc---c-----hhhH
Confidence 8776 899999 79999999988655 55566679999999999999999999999887 4666611 0 0011
Q ss_pred hhhCCCCeEEEEcCccc--HHHHHHHHHHhhCCC
Q 024996 227 LSANEVKTQIFYVPPHK--LLQFLEETSLLFGYS 258 (259)
Q Consensus 227 ~l~~~~~TlVl~~~~~~--l~~il~~L~e~~~~~ 258 (259)
..+.-+.-+||...... ...+--.|++.||+|
T Consensus 149 ~il~vr~hivItQVY~~miAs~vKltLmE~ypDD 182 (488)
T COG3956 149 DILDVRLHIVITQVYDQMIASDVKLTLMEYYPDD 182 (488)
T ss_pred HHHhhhhceeehhHHHHHHHHhHHHHHHHhCCCC
Confidence 22233444555443332 344555688888876
No 35
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.1e-10 Score=102.09 Aligned_cols=133 Identities=26% Similarity=0.322 Sum_probs=96.3
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCH------HHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCe
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG------KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~------~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~ 155 (259)
++|+||.|.||..+||+|+++++++|.-|+.+ .+++- +-++.+ -.++++-.+...-++..+.|++.+.+ .+
T Consensus 1 mlYlIGlGL~d~kDITlrGLeaVK~c~rVylE-aYTSil~~~l~~~lEk~-yGk~iilADRemvEq~sd~il~~ad~-~d 77 (272)
T KOG3123|consen 1 MLYLIGLGLGDEKDITLRGLEAVKKCARVYLE-AYTSILGVGLDATLEKF-YGKEIILADREMVEQESDKILDEADK-ED 77 (272)
T ss_pred CeEEEeccCCcccceehhhHHHHhhhheehHH-HHHHHHHhhhhHHHHHH-hCceeEeccHHHHHhhHHHHhhhhhh-cc
Confidence 48999999999999999999999999999985 34421 112211 12344433221123345567776654 58
Q ss_pred EEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcce---EEEEeecCCCc
Q 024996 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHAR 219 (259)
Q Consensus 156 Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~---~~vg~lp~~~~ 219 (259)
|++| +.|||+...++..++-++++.||+|++|...|-+. |..++|+.+++| .-+.|.+..|+
T Consensus 78 Va~L-VVGdPfgATTHsDlvlRAk~~~ipv~vIHNASimN-avG~CGLqlY~fGetVSiv~ftd~wr 142 (272)
T KOG3123|consen 78 VAFL-VVGDPFGATTHSDLVLRAKELGIPVEVIHNASIMN-AVGCCGLQLYNFGETVSIVFFTDNWR 142 (272)
T ss_pred eEEE-EecCcccccchhhhheehhhcCCCeEEEechHHHh-hhccceeeeeccCcEEEEEEEccCcC
Confidence 9999 68999999999999999999999999999997554 557789988865 12235566665
No 36
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=78.37 E-value=9 Score=34.42 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=62.6
Q ss_pred EEecCCCCccchhHHHHHH-Hh-hCCEEEEeCCCCCHHHHhhcCCCCc------EE--ecCCCCH-------------HH
Q 024996 85 LVATPIGNLEDITLRALRV-LK-SANVILSEDTRHSGKLLQYYNIKTP------LL--SYHKFNE-------------SQ 141 (259)
Q Consensus 85 iVGiGPGdpdlLTlrAl~~-L~-~ADvV~~~~~~~~~~ll~~~~~~~~------~i--~~~~~~~-------------~~ 141 (259)
+||+|-|..-.-.++++-- .+ +.++..++.+..+..++..+++... .+ .++..++ .-
T Consensus 23 viGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS~~t~~l~~~~GI~v~~l~~~~~lDl~iDGADEvd~~~~lIKGGGgAl 102 (227)
T COG0120 23 VIGLGTGSTAAYFIEALGRRVKGELDIGGVPTSFQTEELARELGIPVSSLNEVDSLDLAIDGADEVDPNLNLIKGGGGAL 102 (227)
T ss_pred EEEEcCcHHHHHHHHHHHHhhccCccEEEEeCCHHHHHHHHHcCCeecCccccCccceEeecccccCCCCCEEccChHHH
Confidence 5677777666666666642 22 3577888765555666665554110 01 1111111 12
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchH-HHHHHHhCCCCC
Q 024996 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA-FVAALSASGLAT 205 (259)
Q Consensus 142 ~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS-~~aaaA~~Gipl 205 (259)
..|.|+.+.. .+.|+++ |. ..+++.|.+..++|||+|.--+ +.-....+|...
T Consensus 103 ~rEKIva~~a-k~~IvIv-De---------sKlV~~LG~fplPVEVip~a~~~v~r~l~~~g~~~ 156 (227)
T COG0120 103 LREKIVASAA-KRFIVIV-DE---------SKLVEVLGKFPLPVEVIPFARSAVLRKLEKLGGKP 156 (227)
T ss_pred HHHHHHHHhc-CeEEEEE-eC---------ccchhhcCCCCcCEEEchhHHHHHHHHHHHhCCCc
Confidence 3456666654 3567777 53 4678888888899999998744 444444455543
No 37
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=73.11 E-value=85 Score=29.67 Aligned_cols=146 Identities=12% Similarity=0.075 Sum_probs=77.3
Q ss_pred HHHhhCCEEEEe-CCCCCH-HHHhhcCCCCcEEe-cCCC-CHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHH
Q 024996 102 RVLKSANVILSE-DTRHSG-KLLQYYNIKTPLLS-YHKF-NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKL 177 (259)
Q Consensus 102 ~~L~~ADvV~~~-~~~~~~-~ll~~~~~~~~~i~-~~~~-~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~ 177 (259)
+.+.++|+|++. .+..+. .....+...+.++. ++.+ ...+..+.|.+.++++..+.+++..=||.+++.-.-+.+.
T Consensus 56 e~l~~iDVViIctPs~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea 135 (324)
T TIGR01921 56 KHLDDVDVLILCMGSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEA 135 (324)
T ss_pred HhccCCCEEEEcCCCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhc
Confidence 345789999773 122232 23333334444543 2222 2235566777777766678888544599999877766666
Q ss_pred hhhCCCCEE-EEccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhh------------hCCCCeEEEEcCcccH
Q 024996 178 CVDEKIPVV-PIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLS------------ANEVKTQIFYVPPHKL 244 (259)
Q Consensus 178 l~~~gi~ve-vIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l------------~~~~~TlVl~~~~~~l 244 (259)
+--.|..+. .-||+|--..-+.+-----.+..... +|. ++.|..+ ...+...|+.+.....
T Consensus 136 ~lp~g~~yt~wG~g~s~ghs~a~~~~~Gv~~a~~~t-ip~-----~dal~~v~~Ge~~~l~~~~~h~r~~~vv~e~g~~~ 209 (324)
T TIGR01921 136 VLPKGQTYTFWGPGLSQGHSDAVRRIDGVKKAVQYT-LPS-----EDALEKARRGEAPELTGKQTHKRQCFVVLKDGADH 209 (324)
T ss_pred cCCCCcceeccCCCcCchhhhhhcccCCcccceEEE-Eeh-----HHHHHHHHcCCccccccccceeeeEEEEecCCCCH
Confidence 655565543 23777753333322211111222221 231 1222222 2346667777777777
Q ss_pred HHHHHHHHH
Q 024996 245 LQFLEETSL 253 (259)
Q Consensus 245 ~~il~~L~e 253 (259)
+++-++++.
T Consensus 210 ~~v~~~i~~ 218 (324)
T TIGR01921 210 ERVENEIRT 218 (324)
T ss_pred HHHHHHHhh
Confidence 777777663
No 38
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=70.94 E-value=12 Score=33.38 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHH
Q 024996 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196 (259)
Q Consensus 139 ~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~a 196 (259)
.++..+.+.+....+...+.+| .|.|++..-..++++.+++.|+++.+...-+-...
T Consensus 58 ~~ei~~~i~~~~~~~~~~V~lT-GGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~ 114 (238)
T TIGR03365 58 AEEVWQELKALGGGTPLHVSLS-GGNPALQKPLGELIDLGKAKGYRFALETQGSVWQD 114 (238)
T ss_pred HHHHHHHHHHHhCCCCCeEEEe-CCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHH
Confidence 3455555544333334456664 89999997778999999999999988777665443
No 39
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=69.86 E-value=88 Score=28.50 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=75.0
Q ss_pred eEEEEecCCCCccchhHHHHHHHh----hCCEEEEeCCCCC--HHHHhhcCCCCcEEecCC-----------CCHHHHHH
Q 024996 82 GLYLVATPIGNLEDITLRALRVLK----SANVILSEDTRHS--GKLLQYYNIKTPLLSYHK-----------FNESQREQ 144 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~----~ADvV~~~~~~~~--~~ll~~~~~~~~~i~~~~-----------~~~~~~~~ 144 (259)
++-+||.|- |-..-.+.++ ..|.++.+|+... +.+.+..+.... ...++ ...+...+
T Consensus 2 ~vgiVGcGa-----IG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~-s~ide~~~~~DlvVEaAS~~Av~e 75 (255)
T COG1712 2 KVGIVGCGA-----IGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCV-SDIDELIAEVDLVVEAASPEAVRE 75 (255)
T ss_pred eEEEEeccH-----HHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCcc-ccHHHHhhccceeeeeCCHHHHHH
Confidence 466777763 4444555665 5788887774321 112222222111 11111 11233445
Q ss_pred HHHHHHhCCCeEEEEecCC---CCCCCchHHHHHHHhhhCCCCEEEEccc-hHHHHHHHhC-CCCCcceEEEEeecCCCc
Q 024996 145 TVLNRLKQGEIVALISDAG---TPGISDPGTELAKLCVDEKIPVVPIPGA-SAFVAALSAS-GLATDEFTFVGFLPKHAR 219 (259)
Q Consensus 145 ~I~e~l~~G~~Vv~Ls~~G---DP~i~s~~~~Lv~~l~~~gi~vevIPGI-SS~~aaaA~~-Gipl~~~~~vg~lp~~~~ 219 (259)
...+.+++|.+|.++| .| ||.+.+ .+.+.++..|-.+.+.+|. -.+.+.+|.- |. +.++...+.-|.
T Consensus 76 ~~~~~L~~g~d~iV~S-VGALad~~l~e---rl~~lak~~~~rv~~pSGAiGGlD~l~aar~g~-i~~V~lttrKpp--- 147 (255)
T COG1712 76 YVPKILKAGIDVIVMS-VGALADEGLRE---RLRELAKCGGARVYLPSGAIGGLDALAAARVGG-IEEVVLTTRKPP--- 147 (255)
T ss_pred HhHHHHhcCCCEEEEe-chhccChHHHH---HHHHHHhcCCcEEEecCccchhHHHHHHhhcCC-eeEEEEEeecCh---
Confidence 5566788999999998 45 333332 2333344557788888875 4444444433 32 334444322121
Q ss_pred chHHHHHhhhCCCCeEEEEcCcccHHHHHHHHHHhhCCC
Q 024996 220 SRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYS 258 (259)
Q Consensus 220 ~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~~~~~ 258 (259)
..+.--++. ...|+|++. ..+..+.||.|
T Consensus 148 ---~~lg~dl~~-~ktVlfeG~------a~eA~k~FPkN 176 (255)
T COG1712 148 ---AELGIDLED-KKTVLFEGS------ASEAVKKFPKN 176 (255)
T ss_pred ---HHhCcCccc-CceEEEecc------HHHHHHhCccc
Confidence 111111111 555677765 34555667755
No 40
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=69.18 E-value=48 Score=29.58 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCC-CCcceEEEEeecCCCc
Q 024996 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGL-ATDEFTFVGFLPKHAR 219 (259)
Q Consensus 141 ~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gi-pl~~~~~vg~lp~~~~ 219 (259)
.-.+...+.++.|++|..++ .|...-......+++.+++.|..+-+-+|--...-+.....+ .+..+.+. +.+.
T Consensus 49 ~H~e~a~~aL~aGkhVl~~s-~gAlad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~l~a~~ig~~~~V~i~---~~k~- 123 (229)
T TIGR03855 49 AVKEYAEKILKNGKDLLIMS-VGALADRELRERLREVARSSGRKVYIPSGAIGGLDALKAASLGRIERVVLT---TTKP- 123 (229)
T ss_pred HHHHHHHHHHHCCCCEEEEC-CcccCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHHHHhcccCCceEEEEE---EecC-
Confidence 34566677888999999985 776544455678888888888888775543322222221111 12334443 2221
Q ss_pred chHHHHHhhhCCCCeEEEEcCcccHHHHHHHHHHhhCCC
Q 024996 220 SRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYS 258 (259)
Q Consensus 220 ~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~~~~~ 258 (259)
...|.. .-....++|+++ .++....||.|
T Consensus 124 --p~~~~~--~~~~~~~~f~G~------a~ea~~~fP~n 152 (229)
T TIGR03855 124 --PASLGR--DIKEPTTIFEGS------ASEAIKLFPAN 152 (229)
T ss_pred --hHHhcC--CCCCCEEEEEec------HHHHHHHCCch
Confidence 133433 345677788776 34555567765
No 41
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=64.48 E-value=52 Score=23.94 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=43.0
Q ss_pred hHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHH
Q 024996 97 TLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAK 176 (259)
Q Consensus 97 TlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~ 176 (259)
|.+.++.+.+.+.++. |.|...+......+++..+ + .++..+. ...+..++.|++.|..| .......+
T Consensus 2 ~~~e~~~~~~~~~~ii-D~R~~~~~~~~hipgA~~i--p---~~~~~~~-~~~~~~~~~vvl~c~~g-----~~a~~~a~ 69 (90)
T cd01524 2 QWHELDNYRADGVTLI-DVRTPQEFEKGHIKGAINI--P---LDELRDR-LNELPKDKEIIVYCAVG-----LRGYIAAR 69 (90)
T ss_pred CHHHHHHHhcCCCEEE-ECCCHHHHhcCCCCCCEeC--C---HHHHHHH-HHhcCCCCcEEEEcCCC-----hhHHHHHH
Confidence 4555555556677777 5565444332222222222 1 1222222 23345667888886332 22344556
Q ss_pred HhhhCCCCEEEEccc
Q 024996 177 LCVDEKIPVVPIPGA 191 (259)
Q Consensus 177 ~l~~~gi~vevIPGI 191 (259)
.|++.|+++.++.|-
T Consensus 70 ~L~~~G~~v~~l~GG 84 (90)
T cd01524 70 ILTQNGFKVKNLDGG 84 (90)
T ss_pred HHHHCCCCEEEecCC
Confidence 777778888877764
No 42
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=59.38 E-value=27 Score=30.76 Aligned_cols=49 Identities=10% Similarity=-0.035 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPG 190 (259)
+++.+++.+.-. +..-+.+| .|+|+...-...|++.+++.|+++.+--+
T Consensus 59 ~~I~~~i~~~~~-~~~~V~lT-GGEP~~~~~l~~Ll~~l~~~g~~~~lETn 107 (212)
T COG0602 59 DEILADIKSLGY-KARGVSLT-GGEPLLQPNLLELLELLKRLGFRIALETN 107 (212)
T ss_pred HHHHHHHHhcCC-CcceEEEe-CCcCCCcccHHHHHHHHHhCCceEEecCC
Confidence 444444433212 23345554 89998887788999999998888876653
No 43
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=58.03 E-value=1.2e+02 Score=27.59 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCc
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHAR 219 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~ 219 (259)
++..+++.+.+.+-++|.+.. .| .-+....++..+|...|+++..+.+...... ...-+..+|+.+.--.++...
T Consensus 117 ~~~l~~av~~L~~A~rI~~~G-~g--~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~--~~~~~~~~Dv~i~iS~sG~t~ 191 (281)
T COG1737 117 EEALERAVELLAKARRIYFFG-LG--SSGLVASDLAYKLMRIGLNVVALSDTHGQLM--QLALLTPGDVVIAISFSGYTR 191 (281)
T ss_pred HHHHHHHHHHHHcCCeEEEEE-ec--hhHHHHHHHHHHHHHcCCceeEecchHHHHH--HHHhCCCCCEEEEEeCCCCcH
Confidence 345667777787778888882 33 2233446888888889999999999987663 444455567655422243333
Q ss_pred chHHHHHhhhCCCCeEEEEcCc--ccHHHHHH
Q 024996 220 SRTERLMLSANEVKTQIFYVPP--HKLLQFLE 249 (259)
Q Consensus 220 ~~~~~L~~l~~~~~TlVl~~~~--~~l~~il~ 249 (259)
+-.+.++.+.+.+.++|..... +.+.+..+
T Consensus 192 e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad 223 (281)
T COG1737 192 EIVEAAELAKERGAKVIAITDSADSPLAKLAD 223 (281)
T ss_pred HHHHHHHHHHHCCCcEEEEcCCCCCchhhhhc
Confidence 3334455555666666655543 23555444
No 44
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=56.17 E-value=45 Score=31.18 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=45.7
Q ss_pred cCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEe-cCCCCC
Q 024996 88 TPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS-DAGTPG 166 (259)
Q Consensus 88 iGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls-~~GDP~ 166 (259)
.||-+ -.-+.+++++|++||+|+....- .+-.+.+. + .+..|.+++++ ..|+++| ..|+--
T Consensus 165 ~g~e~-a~a~peal~AI~~AD~IIlGPgs----p~TSI~P~---L---------lVpgIreAL~~-a~vV~Vspiig~~~ 226 (297)
T TIGR01819 165 RGAEK-ASIAPKVLEAIRKEDNILIGPSN----PITSIGPI---L---------SLPGIREALRD-KKVVAVSPIVGNAP 226 (297)
T ss_pred CCCCC-CCCCHHHHHHHHhCCEEEECCCc----cHHHhhhh---c---------CchhHHHHHHc-CCEEEEccCcCCCc
Confidence 45544 45789999999999977663321 12111111 1 12345566666 6788777 346657
Q ss_pred CCchHHHHHHHhhhCCCC
Q 024996 167 ISDPGTELAKLCVDEKIP 184 (259)
Q Consensus 167 i~s~~~~Lv~~l~~~gi~ 184 (259)
+.|+...+.... |++
T Consensus 227 v~GpA~~~m~a~---g~e 241 (297)
T TIGR01819 227 VSGPAGKLMAAV---GVE 241 (297)
T ss_pred CCChHHHHHHHc---CCC
Confidence 788888776654 555
No 45
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=54.81 E-value=96 Score=29.38 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=22.9
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEE-EEeCC
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVI-LSEDT 115 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV-~~~~~ 115 (259)
..|+++| |-+| .-+.+|+++|++||+| ++|.+
T Consensus 167 ~~V~~~~--~~~~-~a~~eaveAI~~AD~IviGPgS 199 (323)
T COG0391 167 HRVRLEG--PEKP-SAAPEAVEAIKEADLIVIGPGS 199 (323)
T ss_pred eEEEEec--CCCC-CCCHHHHHHHHhCCEEEEcCCc
Confidence 4678887 4344 4678999999999955 55543
No 46
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=52.46 E-value=1.2e+02 Score=29.20 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=27.0
Q ss_pred CeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 024996 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (259)
Q Consensus 154 ~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGIS 192 (259)
++|.++ .|-+...+-..++.+.+++.|+++..+|..|
T Consensus 156 ~~VNli--g~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s 192 (428)
T cd01965 156 GKVNLL--PGFPLTPGDVREIKRILEAFGLEPIILPDLS 192 (428)
T ss_pred CeEEEE--CCCCCCccCHHHHHHHHHHcCCCEEEecCcc
Confidence 457777 3555444446788888888999999999774
No 47
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=50.37 E-value=1.3e+02 Score=29.13 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=30.5
Q ss_pred HHHHHHHHHh----CCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 024996 142 REQTVLNRLK----QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (259)
Q Consensus 142 ~~~~I~e~l~----~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS 193 (259)
..+.|++.+. +...|-++ .|- ...+-..++.+.+.+.|+++.++|.+|.
T Consensus 140 a~~al~~~~~~~~~~~~~VNli--g~~-~~~~D~~ei~~lL~~~Gl~~~~~~d~s~ 192 (429)
T cd03466 140 AVRSIVKNIAVDPDKIEKINVI--AGM-MSPADIREIKEILREFGIEYILLPDTSE 192 (429)
T ss_pred HHHHHHHHhccCCCCCCcEEEE--CCC-CChhHHHHHHHHHHHcCCCeEEecCccc
Confidence 4445555432 23357777 232 2233357778888888999998898774
No 48
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=49.12 E-value=64 Score=30.36 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=29.1
Q ss_pred hCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccc
Q 024996 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (259)
Q Consensus 151 ~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGI 191 (259)
+.|-..+.++ .|.|++..-..++++.+++.|+.+.+.---
T Consensus 60 ~~g~~~v~~~-GGEPll~~~~~~il~~~~~~g~~~~i~TNG 99 (378)
T PRK05301 60 ALGALQLHFS-GGEPLLRKDLEELVAHARELGLYTNLITSG 99 (378)
T ss_pred HcCCcEEEEE-CCccCCchhHHHHHHHHHHcCCcEEEECCC
Confidence 3454455564 899999988888899988888877666443
No 49
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=47.98 E-value=24 Score=30.04 Aligned_cols=102 Identities=10% Similarity=0.139 Sum_probs=44.0
Q ss_pred CCCeEEEEecCCCCcc-chhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcE-E-ecCC-C---C---HHHHHHHHHH
Q 024996 79 LEPGLYLVATPIGNLE-DITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPL-L-SYHK-F---N---ESQREQTVLN 148 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpd-lLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~-i-~~~~-~---~---~~~~~~~I~e 148 (259)
-++.++++|.+||.=. .+-...++.+..-+.|+.. ... +..+-++..- . ..+. . . ...+.+.+++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~-~D~----~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVID-ADE----FRQFHPDYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE--GGG----GGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEe-hHH----HHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 4578999999999544 3333334433335666552 211 1111111000 0 0000 0 0 1224455444
Q ss_pred H-HhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEE
Q 024996 149 R-LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (259)
Q Consensus 149 ~-l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevI 188 (259)
. +.++.++++=+.-.+| +....+++.+++.|..++++
T Consensus 88 ~a~~~~~nii~E~tl~~~---~~~~~~~~~~k~~GY~v~l~ 125 (199)
T PF06414_consen 88 YAIENRYNIIFEGTLSNP---SKLRKLIREAKAAGYKVELY 125 (199)
T ss_dssp HHHHCT--EEEE--TTSS---HHHHHHHHHHHCTT-EEEEE
T ss_pred HHHHcCCCEEEecCCCCh---hHHHHHHHHHHcCCceEEEE
Confidence 4 4567666664311222 33345888999989887664
No 50
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=47.78 E-value=1.4e+02 Score=26.91 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchH-HHHH-HHhCCCCCcceEEEEe-ecCCC
Q 024996 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA-FVAA-LSASGLATDEFTFVGF-LPKHA 218 (259)
Q Consensus 142 ~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS-~~aa-aA~~Gipl~~~~~vg~-lp~~~ 218 (259)
..+.+.+.++.|++|+.++ .|.-.-.....++.+.+++.|..+.+-+|.-. .... ++..|- +..+.+.+. .|..+
T Consensus 74 ~~~~~~~al~~Gk~Vvv~s-~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i~a~~~G~-i~~V~~~~~k~p~~~ 151 (265)
T PRK13304 74 VEEVVPKSLENGKDVIIMS-VGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGIKAASLGE-IKSVTLTTRKPPKGL 151 (265)
T ss_pred HHHHHHHHHHcCCCEEEEc-hHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHHHHHhcCC-ccEEEEEEecChHHh
Confidence 3445556677899988875 44211112235777888888887776555332 2222 233343 233333321 12222
Q ss_pred cch-HHHHHhhhCCCCeEEEEcCcccHHHHHHHHHHhhCCC
Q 024996 219 RSR-TERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYS 258 (259)
Q Consensus 219 ~~~-~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~~~~~ 258 (259)
+.- .+..-++..-....++|+++ .++....||.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~f~G~------a~ea~~~fP~n 186 (265)
T PRK13304 152 EGALKELGIDLEEIKEPKVLFEGK------AFEAVKKFPAN 186 (265)
T ss_pred CcChhhcCCCccccccceEEEEec------HHHHHHHCCCc
Confidence 110 01011111224577788876 35556677765
No 51
>PRK05443 polyphosphate kinase; Provisional
Probab=47.60 E-value=94 Score=32.46 Aligned_cols=84 Identities=11% Similarity=0.186 Sum_probs=53.9
Q ss_pred HHHHHhhCCEEEEeCCCCCH----HHHhhcCCCCcEEec-----CCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCCc-
Q 024996 100 ALRVLKSANVILSEDTRHSG----KLLQYYNIKTPLLSY-----HKFNESQREQTVLNRLKQGEIVALISDAGTPGISD- 169 (259)
Q Consensus 100 Al~~L~~ADvV~~~~~~~~~----~ll~~~~~~~~~i~~-----~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s- 169 (259)
-.++|++=|++++.. +.+- ++++....|..++.. .......+++.+++++++|++|.++ ..+-+-+-.
T Consensus 332 if~~I~~~DiLLh~P-Y~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vl-ve~karfde~ 409 (691)
T PRK05443 332 IFAAIREKDILLHHP-YESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVL-VELKARFDEE 409 (691)
T ss_pred HHHHHhhCCEEEECC-ccCchHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEE-EccCccccHH
Confidence 467899999999964 4432 233333333333221 1112366888999999999999999 466653333
Q ss_pred hHHHHHHHhhhCCCCE
Q 024996 170 PGTELAKLCVDEKIPV 185 (259)
Q Consensus 170 ~~~~Lv~~l~~~gi~v 185 (259)
......+.|.+.|+.|
T Consensus 410 ~n~~~~~~L~~aGv~V 425 (691)
T PRK05443 410 ANIRWARRLEEAGVHV 425 (691)
T ss_pred HHHHHHHHHHHcCCEE
Confidence 3345677888889876
No 52
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=46.46 E-value=1.6e+02 Score=27.58 Aligned_cols=72 Identities=14% Similarity=0.169 Sum_probs=43.0
Q ss_pred cchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCC-CeEEEEe-cCCCCCCCchH
Q 024996 94 EDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQG-EIVALIS-DAGTPGISDPG 171 (259)
Q Consensus 94 dlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G-~~Vv~Ls-~~GDP~i~s~~ 171 (259)
-.-+.+++++|++||+|+....- .+-.+.+. + .+..|.+++++. -.|+++| ..|+--+.|+.
T Consensus 171 a~~~p~vl~AI~~AD~IVlGPgs----p~TSI~P~---L---------lVpgI~eAL~~s~A~vV~Vspiig~~~v~Gpa 234 (303)
T cd07186 171 ARPAPEVLEAIEDADLVIIGPSN----PVTSIGPI---L---------ALPGIREALRDKKAPVVAVSPIIGGKAVSGPA 234 (303)
T ss_pred CCCCHHHHHHHHhCCEEEECCCc----cHHHhhhh---c---------cchhHHHHHHhCCCCEEEEcCCCCCCCCCchH
Confidence 45789999999999977663321 12111111 1 122344444432 3677777 55777788888
Q ss_pred HHHHHHhhhCCCC
Q 024996 172 TELAKLCVDEKIP 184 (259)
Q Consensus 172 ~~Lv~~l~~~gi~ 184 (259)
..+++.+ |++
T Consensus 235 ~~~m~a~---G~~ 244 (303)
T cd07186 235 AKLMAAL---GFE 244 (303)
T ss_pred HHHHHHc---CCC
Confidence 8887664 555
No 53
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=46.09 E-value=67 Score=26.86 Aligned_cols=52 Identities=12% Similarity=0.000 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 024996 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (259)
Q Consensus 139 ~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGIS 192 (259)
.++..+.+.+. ...-+.+.++ .|+|+++....++++.+++.|+.+.+...-+
T Consensus 49 ~~~i~~~i~~~-~~~~~~i~~s-GGEPll~~~l~~li~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 49 VEFLLEFLRSR-QGLIDGVVIT-GGEPTLQAGLPDFLRKVRELGFEVKLDTNGS 100 (191)
T ss_pred HHHHHHHHHHh-cCCCCeEEEE-CCcccCcHhHHHHHHHHHHCCCeEEEEeCCC
Confidence 34555555443 2222344564 7999998778888999999998887775554
No 54
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=45.69 E-value=1e+02 Score=30.02 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=32.1
Q ss_pred eEEEEecCCC--CccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCC
Q 024996 82 GLYLVATPIG--NLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK 128 (259)
Q Consensus 82 ~l~iVGiGPG--dpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~ 128 (259)
+++++|.|.| +-..-..-+..+++.||.|.+=| ..+.++++.++..
T Consensus 150 pv~l~gqsiGPf~~~~~r~l~r~vl~~~~~ItvRD-~~S~~~Lk~lGv~ 197 (426)
T PRK10017 150 PLYMIGHSVGPFQDEQFNQLANYVFGHCDALILRE-SVSLDLMKRSNIT 197 (426)
T ss_pred CEEEECCcCCCcCCHHHHHHHHHHHhcCCEEEEcc-HHHHHHHHHhCCC
Confidence 3666555555 55555667788999999999943 4667778777654
No 55
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=45.06 E-value=74 Score=29.61 Aligned_cols=44 Identities=20% Similarity=0.114 Sum_probs=29.7
Q ss_pred HHHHHHh-CCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 024996 145 TVLNRLK-QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (259)
Q Consensus 145 ~I~e~l~-~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIP 189 (259)
.+++.+. .|-..+.++ .|+|++..-..++++.+++.|+.+.+.-
T Consensus 44 ~ii~~~~~~g~~~v~~~-GGEPll~~~~~~ii~~~~~~g~~~~l~T 88 (358)
T TIGR02109 44 DVLTQAAELGVLQLHFS-GGEPLARPDLVELVAHARRLGLYTNLIT 88 (358)
T ss_pred HHHHHHHhcCCcEEEEe-CccccccccHHHHHHHHHHcCCeEEEEe
Confidence 3344333 344455564 7999998878888888888887765543
No 56
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.80 E-value=1.7e+02 Score=23.80 Aligned_cols=119 Identities=11% Similarity=-0.014 Sum_probs=64.2
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHh---hCCEEEEeCCCCC-HHHHhhcCC-CCcEE--ecCCCCHHHHHHHHHHHHh
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLK---SANVILSEDTRHS-GKLLQYYNI-KTPLL--SYHKFNESQREQTVLNRLK 151 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~---~ADvV~~~~~~~~-~~ll~~~~~-~~~~i--~~~~~~~~~~~~~I~e~l~ 151 (259)
|++.-.++|+.+||...+=+.-...+- --++|+.- ..++ +++++.... +..++ ++.........+++++.++
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG-~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLG-VMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHH
Confidence 455667999999998777766555443 33677663 3343 555554332 22333 3322222333444445554
Q ss_pred CC-C-eEEEEecCCCCCCCc-hHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 024996 152 QG-E-IVALISDAGTPGISD-PGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (259)
Q Consensus 152 ~G-~-~Vv~Ls~~GDP~i~s-~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~ 200 (259)
+. . ++-++ ..|-+.+.+ ...+..+.+++.|++...-||. ...-.+..
T Consensus 80 ~~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~-~~~~i~~~ 129 (137)
T PRK02261 80 EAGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT-DPEEAIDD 129 (137)
T ss_pred hcCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCC-CHHHHHHH
Confidence 32 2 35555 468776642 2456678888888765444444 44444443
No 57
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=44.46 E-value=1.7e+02 Score=27.38 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhC--CCeEEEEecCCCCCCCch--HHHHHHHhhh
Q 024996 141 QREQTVLNRLKQ--GEIVALISDAGTPGISDP--GTELAKLCVD 180 (259)
Q Consensus 141 ~~~~~I~e~l~~--G~~Vv~Ls~~GDP~i~s~--~~~Lv~~l~~ 180 (259)
+.++++++.+++ |-+-+++| .|||++... ..++++.+++
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~ls-GGDPLl~~d~~L~~ll~~L~~ 187 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILIS-GGDPLMAKDHELEWLLKRLEE 187 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEE-CCccccCCHHHHHHHHHHHHh
Confidence 445566666653 33456664 899998865 5677777766
No 58
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=43.26 E-value=43 Score=30.19 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=40.3
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls 160 (259)
..++|||.||+--+.+.. -++++|+.++.-+ ..+++ .+.-..++.-+. +...+.+.+...+|..+++-
T Consensus 53 ~~v~vvG~gP~l~e~~~~------~~~~~vi~AdgA~-~~l~~-~gi~pDiiVTDl---Dgd~e~~~~~~~~g~i~VVH- 120 (232)
T COG1634 53 REVAVVGAGPSLEEEIKG------LSSEVVIAADGAV-SALLE-RGIRPDIIVTDL---DGDPEDLLSCTAKGSIVVVH- 120 (232)
T ss_pred CEEEEECCCCcHhhhhcc------cccceEEeccHHH-HHHHH-cCCCCcEEEecC---CCCHHHHHHhhccCCEEEEE-
Confidence 479999999986665554 5688999977422 22332 222222332221 12234455555667655555
Q ss_pred cCCC
Q 024996 161 DAGT 164 (259)
Q Consensus 161 ~~GD 164 (259)
.-||
T Consensus 121 AHGD 124 (232)
T COG1634 121 AHGD 124 (232)
T ss_pred ecCc
Confidence 4677
No 59
>PRK00861 putative lipid kinase; Reviewed
Probab=43.10 E-value=1.1e+02 Score=27.69 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=38.7
Q ss_pred HHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 024996 149 RLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (259)
Q Consensus 149 ~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl 205 (259)
.+.++.+++++ ..|| |+..+.+..+...++++-++|+-| ..-.+-.+|+|.
T Consensus 53 ~~~~~~d~vv~-~GGD----GTl~evv~~l~~~~~~lgviP~GT-gNdfAr~lgi~~ 103 (300)
T PRK00861 53 AIERGAELIIA-SGGD----GTLSAVAGALIGTDIPLGIIPRGT-ANAFAAALGIPD 103 (300)
T ss_pred HHhcCCCEEEE-ECCh----HHHHHHHHHHhcCCCcEEEEcCCc-hhHHHHHcCCCC
Confidence 33456667777 4899 777788888877788999999976 577777788874
No 60
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=41.77 E-value=1.4e+02 Score=21.96 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=25.5
Q ss_pred HHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024996 147 LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (259)
Q Consensus 147 ~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPG 190 (259)
...+..++.|++.|..| .+.....+.|++.|+++..+.|
T Consensus 55 ~~~~~~~~~ivv~C~~G-----~rs~~aa~~L~~~G~~~~~l~G 93 (100)
T cd01523 55 LDQLPDDQEVTVICAKE-----GSSQFVAELLAERGYDVDYLAG 93 (100)
T ss_pred HhhCCCCCeEEEEcCCC-----CcHHHHHHHHHHcCceeEEeCC
Confidence 34455677888887555 2445666777788887655555
No 61
>PRK13057 putative lipid kinase; Reviewed
Probab=40.69 E-value=1.3e+02 Score=27.05 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=37.4
Q ss_pred HhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 024996 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (259)
Q Consensus 150 l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl 205 (259)
+.++.+++++ ..|| |+..+.++.+.+.++++-++|+-| ..-.+-.+|++.
T Consensus 47 ~~~~~d~iiv-~GGD----GTv~~v~~~l~~~~~~lgiiP~GT-~Ndfar~Lg~~~ 96 (287)
T PRK13057 47 YADGVDLVIV-GGGD----GTLNAAAPALVETGLPLGILPLGT-ANDLARTLGIPL 96 (287)
T ss_pred HHcCCCEEEE-ECch----HHHHHHHHHHhcCCCcEEEECCCC-ccHHHHHcCCCC
Confidence 4455567777 4899 777788888877789999999887 466666677764
No 62
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=40.47 E-value=2.4e+02 Score=24.50 Aligned_cols=89 Identities=13% Similarity=0.174 Sum_probs=48.2
Q ss_pred CeEEEEecCCCCccchhHHHHHHHh-hCCEEEEeCCCCCHHHHhhcCCCCcEE-ecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLK-SANVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNRLKQGEIVAL 158 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~-~ADvV~~~~~~~~~~ll~~~~~~~~~i-~~~~~~~~~~~~~I~e~l~~G~~Vv~ 158 (259)
.++.|||.|.-. .-|+..+++ .|++.++.. ..++++.+... ...+. ....+... .+ ++...++
T Consensus 10 k~vlVvGgG~va----~rk~~~Ll~~ga~VtVvsp-~~~~~l~~l~~-~~~i~~~~~~~~~~--------dl-~~~~lVi 74 (205)
T TIGR01470 10 RAVLVVGGGDVA----LRKARLLLKAGAQLRVIAE-ELESELTLLAE-QGGITWLARCFDAD--------IL-EGAFLVI 74 (205)
T ss_pred CeEEEECcCHHH----HHHHHHHHHCCCEEEEEcC-CCCHHHHHHHH-cCCEEEEeCCCCHH--------Hh-CCcEEEE
Confidence 379999999622 334444443 556777743 34444333221 11221 11112211 12 4678888
Q ss_pred EecCCCCCCCchHHHHHHHhhhCCCCEEEE
Q 024996 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (259)
Q Consensus 159 Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevI 188 (259)
++ +||+-+. ..+.+.+++.|+.|.+.
T Consensus 75 ~a-t~d~~ln---~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 75 AA-TDDEELN---RRVAHAARARGVPVNVV 100 (205)
T ss_pred EC-CCCHHHH---HHHHHHHHHcCCEEEEC
Confidence 85 8987554 56777777788877654
No 63
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=40.34 E-value=72 Score=24.79 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=41.0
Q ss_pred HHHHHHHHHHH-HhCCCeEEEEecCCCCCCCchHHHHHHHhhhC---CCCEEEEccchH----HHHHHHhCC
Q 024996 139 ESQREQTVLNR-LKQGEIVALISDAGTPGISDPGTELAKLCVDE---KIPVVPIPGASA----FVAALSASG 202 (259)
Q Consensus 139 ~~~~~~~I~e~-l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~---gi~vevIPGISS----~~aaaA~~G 202 (259)
.++..+.+.+. ...|...++++ .|+|+.+.....++..+.+. ++++.+.-..+- ........|
T Consensus 30 ~e~i~~~~~~~~~~~~~~~i~~~-~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~ 100 (166)
T PF04055_consen 30 PEEILEEIKELKQDKGVKEIFFG-GGEPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLG 100 (166)
T ss_dssp HHHHHHHHHHHHHHTTHEEEEEE-SSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHhcCCcEEEEe-ecCCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcC
Confidence 34555566555 46666777774 89999998887777776654 666655544433 355556666
No 64
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=40.03 E-value=61 Score=25.36 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHh-CCCeEEEEecCCCCCC---CchHHHHHHHhhhCCC-CEE-EEccchH
Q 024996 140 SQREQTVLNRLK-QGEIVALISDAGTPGI---SDPGTELAKLCVDEKI-PVV-PIPGASA 193 (259)
Q Consensus 140 ~~~~~~I~e~l~-~G~~Vv~Ls~~GDP~i---~s~~~~Lv~~l~~~gi-~ve-vIPGISS 193 (259)
.+..+++++.+. .+..-+.++ .|+|++ +....++++.+++.+. .+. ..-|...
T Consensus 38 ~~~~~~ii~~~~~~~~~~i~l~-GGEPll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~~ 96 (139)
T PF13353_consen 38 EEIIEEIIEELKNYGIKGIVLT-GGEPLLHENYDELLEILKYIKEKFPKKIIILTNGYTL 96 (139)
T ss_dssp HHHHHHHCHHHCCCCCCEEEEE-CSTGGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--H
T ss_pred chhhhhhhhHHhcCCceEEEEc-CCCeeeeccHhHHHHHHHHHHHhCCCCeEEEECCCch
Confidence 455666666664 333444453 799999 6777888999988876 333 3444443
No 65
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=39.64 E-value=3.7e+02 Score=26.23 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=53.3
Q ss_pred CCeEEEEecCCCC-CCCchH----HHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHh
Q 024996 153 GEIVALISDAGTP-GISDPG----TELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLML 227 (259)
Q Consensus 153 G~~Vv~Ls~~GDP-~i~s~~----~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~ 227 (259)
++.++++ |+- =+++.. .++.+.+.+.+++.-++-|..+-..+. .+... ....+ .+ +..+..+.+..
T Consensus 369 ~r~i~V~---G~m~elg~~~~~~h~~~~~~~~~~~~d~v~~~G~~~~~~~~-~~~~~-~~~~~---~~-~~~~~~~~l~~ 439 (479)
T PRK14093 369 GRRIAVL---GDMLELGPRGPELHRGLAEAIRANAIDLVFCCGPLMRNLWD-ALSSG-KRGGY---AE-DAAALESQVVA 439 (479)
T ss_pred CCEEEEE---CChHHcCcHHHHHHHHHHHHHHHcCCCEEEEEchhHHHHHH-hhccc-cccee---eC-CHHHHHHHHHH
Confidence 4666666 542 133333 355566666678888888976543332 22110 01111 12 11111234555
Q ss_pred hhCCCCeEEEEcCcc--cHHHHHHHHHHhhCCC
Q 024996 228 SANEVKTQIFYVPPH--KLLQFLEETSLLFGYS 258 (259)
Q Consensus 228 l~~~~~TlVl~~~~~--~l~~il~~L~e~~~~~ 258 (259)
.++.++ +|+.|+.+ +++++++.|.+.|++|
T Consensus 440 ~~~~gd-~vL~kGSr~~~le~i~~~l~~~~~~~ 471 (479)
T PRK14093 440 AIRAGD-VIMVKGSLGSRMKTIVTALEKRFPGN 471 (479)
T ss_pred hcCCCC-EEEEEcCCcCCHHHHHHHHHhhCCCc
Confidence 555555 57777776 6999999999999875
No 66
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.10 E-value=88 Score=29.91 Aligned_cols=31 Identities=6% Similarity=0.213 Sum_probs=28.2
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEe
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSE 113 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~ 113 (259)
.++.|.|+|| ..++|..+.+++-.+|+|+.+
T Consensus 171 s~vLV~GAGP--IGl~t~l~Aka~GA~~VVi~d 201 (354)
T KOG0024|consen 171 SKVLVLGAGP--IGLLTGLVAKAMGASDVVITD 201 (354)
T ss_pred CeEEEECCcH--HHHHHHHHHHHcCCCcEEEee
Confidence 3799999998 689999999999999999995
No 67
>PRK12361 hypothetical protein; Provisional
Probab=37.63 E-value=1.7e+02 Score=29.23 Aligned_cols=51 Identities=25% Similarity=0.236 Sum_probs=36.1
Q ss_pred HHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCC
Q 024996 149 RLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (259)
Q Consensus 149 ~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gip 204 (259)
...++.+++++ ..|| |+..+.++.+.+.++++-++|+-|.=..|=+..|++
T Consensus 293 ~~~~~~d~Viv-~GGD----GTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~ 343 (547)
T PRK12361 293 ARKAGADIVIA-CGGD----GTVTEVASELVNTDITLGIIPLGTANALSHALFGLG 343 (547)
T ss_pred HHhcCCCEEEE-ECCC----cHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCC
Confidence 33456567777 4899 777788888877788999999998644444433664
No 68
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=37.16 E-value=1.6e+02 Score=27.52 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=26.8
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEe
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSE 113 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~ 113 (259)
+++.|+|.|| -.+++..+.+.+-.+.+|+.+
T Consensus 170 ~~V~V~GaGp--IGLla~~~a~~~Ga~~Viv~d 200 (350)
T COG1063 170 GTVVVVGAGP--IGLLAIALAKLLGASVVIVVD 200 (350)
T ss_pred CEEEEECCCH--HHHHHHHHHHHcCCceEEEeC
Confidence 3799998888 789999999999999999983
No 69
>PRK11914 diacylglycerol kinase; Reviewed
Probab=37.05 E-value=1.2e+02 Score=27.68 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=37.9
Q ss_pred HHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 024996 148 NRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (259)
Q Consensus 148 e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl 205 (259)
+.+.++-+++++ ..|| |+..+.+..+...++++-++|+-|. ...+-.+|+|.
T Consensus 59 ~~~~~~~d~vvv-~GGD----GTi~evv~~l~~~~~~lgiiP~GT~-NdfAr~lg~~~ 110 (306)
T PRK11914 59 AALAKGTDALVV-VGGD----GVISNALQVLAGTDIPLGIIPAGTG-NDHAREFGIPT 110 (306)
T ss_pred HHHhcCCCEEEE-ECCc----hHHHHHhHHhccCCCcEEEEeCCCc-chhHHHcCCCC
Confidence 344555567777 4899 6667778777777889999999875 55556778864
No 70
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=36.96 E-value=92 Score=28.76 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=24.6
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHh
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQ 123 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~ 123 (259)
.+|.|||.|.|. .+-..++...-..+++++ ..+++++
T Consensus 78 k~VLiiGgGdG~---tlRevlkh~~ve~i~~VE---ID~~Vi~ 114 (282)
T COG0421 78 KRVLIIGGGDGG---TLREVLKHLPVERITMVE---IDPAVIE 114 (282)
T ss_pred CeEEEECCCccH---HHHHHHhcCCcceEEEEE---cCHHHHH
Confidence 489999999985 455556665556677774 3345554
No 71
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=36.81 E-value=2.1e+02 Score=27.34 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCEEEEeCCCCCHHHHhhcCCCCcEEec---CCCCHHHHHHHHHHHHhC-CCeEEEEecCCCCCCCchHHHHHHHhhhCC
Q 024996 107 ANVILSEDTRHSGKLLQYYNIKTPLLSY---HKFNESQREQTVLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVDEK 182 (259)
Q Consensus 107 ADvV~~~~~~~~~~ll~~~~~~~~~i~~---~~~~~~~~~~~I~e~l~~-G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~g 182 (259)
||+|+...... +.......+++.. ...+.+..++.....++. +++|+++ ++.-++.....+.+.|+..|
T Consensus 76 ~D~iVH~GHs~----l~~~~~~~~Viyv~~~~~~d~~~~~~~~~~~l~~~~r~I~li---~t~q~~~~l~~~k~~L~~~g 148 (347)
T COG1736 76 VDLIVHYGHSC----LPPVEYELPVIYVFAFSRVDVDLVVLEATRELKKGSRRIGLI---TTAQHVHLLEEVKEILEGRG 148 (347)
T ss_pred ccEEEEccccc----CCCcCCCCcEEEeecccccchhHHHHHhhHhhccCCceEEEE---ecccchhHHHHHHHHhhcCC
Confidence 89998865321 1111122333221 223344444444445554 4458887 45667777788888888899
Q ss_pred CCEEEEccchHHH
Q 024996 183 IPVVPIPGASAFV 195 (259)
Q Consensus 183 i~vevIPGISS~~ 195 (259)
..+++.+|-+...
T Consensus 149 ~~v~i~~~~~r~~ 161 (347)
T COG1736 149 YEVVIGRGQTRPA 161 (347)
T ss_pred eEEEEeCCCCccc
Confidence 9899999887543
No 72
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=36.78 E-value=1.9e+02 Score=21.98 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=51.7
Q ss_pred HHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCc--c
Q 024996 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHAR--S 220 (259)
Q Consensus 143 ~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~--~ 220 (259)
.+++.+.+.+.++|.+.. .|. -+....++...+...|..++.+++......... ..+-++..++ ++..+. +
T Consensus 3 i~~~~~~i~~~~~i~i~g-~g~--s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~--iS~~g~~~~ 75 (139)
T cd05013 3 LEKAVDLLAKARRIYIFG-VGS--SGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAA--NLTPGDVVIA--ISFSGETKE 75 (139)
T ss_pred HHHHHHHHHhCCEEEEEE-cCc--hHHHHHHHHHHHHHcCCceEEecCHHHHHHHHH--cCCCCCEEEE--EeCCCCCHH
Confidence 345566666667777773 664 445667778888888989999988755443333 2333444443 233332 2
Q ss_pred hHHHHHhhhCCCCeEEEEcC
Q 024996 221 RTERLMLSANEVKTQIFYVP 240 (259)
Q Consensus 221 ~~~~L~~l~~~~~TlVl~~~ 240 (259)
..+.++.+.+.+..+|+...
T Consensus 76 ~~~~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 76 TVEAAEIAKERGAKVIAITD 95 (139)
T ss_pred HHHHHHHHHHcCCeEEEEcC
Confidence 22344455555555555444
No 73
>PLN02335 anthranilate synthase
Probab=36.68 E-value=31 Score=30.39 Aligned_cols=39 Identities=15% Similarity=0.027 Sum_probs=27.4
Q ss_pred HHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024996 147 LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (259)
Q Consensus 147 ~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPG 190 (259)
+...++.++|+++ |.||.+.+ .+++.+++.|++++|++.
T Consensus 12 ~~~~~~~~~ilvi-D~~dsft~----~i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 12 INSSKQNGPIIVI-DNYDSFTY----NLCQYMGELGCHFEVYRN 50 (222)
T ss_pred hcccCccCcEEEE-ECCCCHHH----HHHHHHHHCCCcEEEEEC
Confidence 3444667788888 87775555 466666777888888876
No 74
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=36.56 E-value=3.2e+02 Score=24.53 Aligned_cols=95 Identities=11% Similarity=0.036 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcc
Q 024996 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS 220 (259)
Q Consensus 141 ~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~ 220 (259)
+..+++.+.+.+-++|.+.. .|. -+....++...+...|+++.+++.........+ .+.-+|+.++--.++...+
T Consensus 128 ~~l~~~~~~i~~A~~I~i~G-~G~--S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~--~~~~~Dl~I~iS~sG~t~~ 202 (292)
T PRK11337 128 DEFHRAARFFYQARQRDLYG-AGG--SAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAA--LLQEGDVVLVVSHSGRTSD 202 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEE-ecH--HHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHh--cCCCCCEEEEEeCCCCCHH
Confidence 34566777777777777763 553 334456777777778999988887764433332 3444566554223444333
Q ss_pred hHHHHHhhhCCCCeEEEEcC
Q 024996 221 RTERLMLSANEVKTQIFYVP 240 (259)
Q Consensus 221 ~~~~L~~l~~~~~TlVl~~~ 240 (259)
-.+.++.+.+.+..+|....
T Consensus 203 ~~~~~~~ak~~g~~ii~IT~ 222 (292)
T PRK11337 203 VIEAVELAKKNGAKIICITN 222 (292)
T ss_pred HHHHHHHHHHCCCeEEEEeC
Confidence 23444444455555555443
No 75
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=36.27 E-value=1.2e+02 Score=24.04 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=31.8
Q ss_pred HHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhC--CCCEEEEccch
Q 024996 146 VLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE--KIPVVPIPGAS 192 (259)
Q Consensus 146 I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~--gi~vevIPGIS 192 (259)
+......+....+++ .|||+......++++.+++. ++.+.+.-...
T Consensus 37 ~~~~~~~~~~~i~~~-ggep~~~~~~~~~i~~~~~~~~~~~~~i~T~~~ 84 (204)
T cd01335 37 VLEAKERGVEVVILT-GGEPLLYPELAELLRRLKKELPGFEISIETNGT 84 (204)
T ss_pred HHHHHhcCceEEEEe-CCcCCccHhHHHHHHHHHhhCCCceEEEEcCcc
Confidence 333344566677774 89999998777788888876 77776664443
No 76
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=36.21 E-value=3.1e+02 Score=24.34 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcc
Q 024996 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS 220 (259)
Q Consensus 141 ~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~ 220 (259)
+..+++.+.+.+.++|.++. .|. -+....++...+...|+++............++ .+.-+|+.++--.++...+
T Consensus 116 ~~l~~~~~~i~~a~~I~i~G-~G~--s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~--~~~~~Dv~I~iS~sg~~~~ 190 (278)
T PRK11557 116 EKLHECVTMLRSARRIILTG-IGA--SGLVAQNFAWKLMKIGINAVAERDMHALLATVQ--ALSPDDLLLAISYSGERRE 190 (278)
T ss_pred HHHHHHHHHHhcCCeEEEEe-cCh--hHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHH--hCCCCCEEEEEcCCCCCHH
Confidence 34556677777778888873 552 344567777788888888877655544444333 3344565443112333222
Q ss_pred hHHHHHhhhCCCCeEEEEcC
Q 024996 221 RTERLMLSANEVKTQIFYVP 240 (259)
Q Consensus 221 ~~~~L~~l~~~~~TlVl~~~ 240 (259)
..+.++.+.+.+..+|....
T Consensus 191 ~~~~~~~ak~~ga~iI~IT~ 210 (278)
T PRK11557 191 LNLAADEALRVGAKVLAITG 210 (278)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 22344444455555544443
No 77
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=36.09 E-value=1.4e+02 Score=23.47 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCC----CEEEEccchHHHHHHHhCCCCC
Q 024996 149 RLKQGEIVALISDAGTPGISDPGTELAKLCVDEKI----PVVPIPGASAFVAALSASGLAT 205 (259)
Q Consensus 149 ~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi----~vevIPGISS~~aaaA~~Gipl 205 (259)
......+++++ ..|| |+..+++..+.+.+. ++-++|+-| ....+-.+|++.
T Consensus 50 ~~~~~~~~ivv-~GGD----GTl~~vv~~l~~~~~~~~~~l~iiP~GT-~N~~ar~lg~~~ 104 (130)
T PF00781_consen 50 ALDDYPDVIVV-VGGD----GTLNEVVNGLMGSDREDKPPLGIIPAGT-GNDFARSLGIPS 104 (130)
T ss_dssp HHTTS-SEEEE-EESH----HHHHHHHHHHCTSTSSS--EEEEEE-SS-S-HHHHHTT--S
T ss_pred hhccCccEEEE-EcCc----cHHHHHHHHHhhcCCCccceEEEecCCC-hhHHHHHcCCCC
Confidence 33444256666 4899 677788888877655 889999876 577777777764
No 78
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=35.23 E-value=72 Score=24.36 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=21.3
Q ss_pred EEEecCCCCCCC---chHHHHHHHhhhCC--CCEEEEccchH
Q 024996 157 ALISDAGTPGIS---DPGTELAKLCVDEK--IPVVPIPGASA 193 (259)
Q Consensus 157 v~Ls~~GDP~i~---s~~~~Lv~~l~~~g--i~vevIPGISS 193 (259)
+.++ .|.|+++ ....++++.+++.+ +.+.+.-..+-
T Consensus 51 v~~~-GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TNg~~ 91 (119)
T PF13394_consen 51 VVFT-GGEPLLYLNPEDLIELIEYLKERGPEIKIRIETNGTL 91 (119)
T ss_dssp EEEE-SSSGGGSTTHHHHHHHHCTSTT-----EEEEEE-STT
T ss_pred EEEE-CCCCccccCHHHHHHHHHHHHhhCCCceEEEEeCCee
Confidence 4453 8999987 33567777777776 66666655443
No 79
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=35.13 E-value=1.3e+02 Score=27.31 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=27.1
Q ss_pred hCCCeEEEEecCCCCCCCchHHHHHHHhhhCCC-CEEEEc
Q 024996 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKI-PVVPIP 189 (259)
Q Consensus 151 ~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi-~vevIP 189 (259)
..|-+-+.++ .|.|++.....++++.+++.|+ ++.+.-
T Consensus 54 ~~gi~~I~~t-GGEPll~~~l~~iv~~l~~~g~~~v~i~T 92 (302)
T TIGR02668 54 EFGVRKVKIT-GGEPLLRKDLIEIIRRIKDYGIKDVSMTT 92 (302)
T ss_pred HcCCCEEEEE-CcccccccCHHHHHHHHHhCCCceEEEEc
Confidence 3454445554 7999999888888888888777 665554
No 80
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=34.92 E-value=3.7e+02 Score=26.99 Aligned_cols=107 Identities=11% Similarity=0.042 Sum_probs=57.0
Q ss_pred eEEEEecCCCCccc-hhHHHHHHHhhC-CEEEEeCCCCCHHHHhhcCCCCcEEe-cCCCCHHHHHHHHHHHHhC-CCeEE
Q 024996 82 GLYLVATPIGNLED-ITLRALRVLKSA-NVILSEDTRHSGKLLQYYNIKTPLLS-YHKFNESQREQTVLNRLKQ-GEIVA 157 (259)
Q Consensus 82 ~l~iVGiGPGdpdl-LTlrAl~~L~~A-DvV~~~~~~~~~~ll~~~~~~~~~i~-~~~~~~~~~~~~I~e~l~~-G~~Vv 157 (259)
.+.=||.+++.|+. --..+++++++. |+.+.=|+..++.+-+.+...+.++. ....+ .+++.+.+++ |-.++
T Consensus 180 DIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiINsVs~~~----~d~~~~l~a~~g~~vV 255 (499)
T TIGR00284 180 DMVALGTGSFDDDPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVIMPDVEN----AVELASEKKLPEDAFV 255 (499)
T ss_pred CEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEEECCccc----hhHHHHHHHHcCCeEE
Confidence 57779999887753 256777888775 77666677654433333333344442 21111 2233333333 44555
Q ss_pred EEecCCCCCCCchHHHHHHHhhhCCC-CEEEEccchH
Q 024996 158 LISDAGTPGISDPGTELAKLCVDEKI-PVVPIPGASA 193 (259)
Q Consensus 158 ~Ls~~GDP~i~s~~~~Lv~~l~~~gi-~vevIPGISS 193 (259)
++. ....--|.-..+.++.+.+.|+ ++-+=||+..
T Consensus 256 lm~-~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~ 291 (499)
T TIGR00284 256 VVP-GNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP 291 (499)
T ss_pred EEc-CCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc
Confidence 552 2111122334456666777777 5666677764
No 81
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=34.91 E-value=2.6e+02 Score=26.26 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=39.9
Q ss_pred cchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEe-cCCCCCCCchHH
Q 024996 94 EDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS-DAGTPGISDPGT 172 (259)
Q Consensus 94 dlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls-~~GDP~i~s~~~ 172 (259)
-.-|.+++++|++||+|+....- .+-.+.+ .+ .+..|.+++ ....|+++| ..|+--+.|+..
T Consensus 173 a~a~p~vl~AI~~AD~IiiGPgn----p~TSI~P---~L---------~v~gi~eAL-~~a~vV~Vsp~Ig~~~v~GPA~ 235 (303)
T PRK13606 173 AKPAPGVLEAIEEADAVIIGPSN----PVTSIGP---IL---------AVPGIREAL-TEAPVVAVSPIIGGAPVSGPAA 235 (303)
T ss_pred CCCCHHHHHHHHhCCEEEECCCc----cHHhhch---hc---------cchhHHHHH-hCCCEEEEcCCCCCCcCCChhH
Confidence 45789999999999988764321 1221111 11 122344555 345788776 345556777777
Q ss_pred HHHHHh
Q 024996 173 ELAKLC 178 (259)
Q Consensus 173 ~Lv~~l 178 (259)
.+....
T Consensus 236 ~lm~a~ 241 (303)
T PRK13606 236 KLMAAI 241 (303)
T ss_pred HHHHHc
Confidence 776543
No 82
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=34.85 E-value=4.3e+02 Score=25.63 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=28.8
Q ss_pred CeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 024996 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (259)
Q Consensus 154 ~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS 193 (259)
+.|-++ .|.+...+-..++.+.+.+.|+++.++|.+|+
T Consensus 168 ~~VNii--g~~~~~~~d~~elk~lL~~~Gl~~~~l~d~s~ 205 (432)
T TIGR01285 168 RRVNLL--VGSLLTPGDIEELRRMVEAFGLKPIILPDLSR 205 (432)
T ss_pred CeEEEE--cCCCCCccCHHHHHHHHHHcCCceEEeccccc
Confidence 357777 46666556667787888889999999998875
No 83
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=34.72 E-value=3.2e+02 Score=24.70 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccc
Q 024996 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (259)
Q Consensus 143 ~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGI 191 (259)
.+.+...++.|+.|...+ .|... ...++++.+++.|..+.+-+|-
T Consensus 81 ~e~~~~aL~aGk~Vi~~s-~gal~---~~~~L~~~A~~~g~~l~v~sGa 125 (271)
T PRK13302 81 RAIVEPVLAAGKKAIVLS-VGALL---RNEDLIDLARQNGGQIIVPTGA 125 (271)
T ss_pred HHHHHHHHHcCCcEEEec-chhHH---hHHHHHHHHHHcCCEEEEcchH
Confidence 444566678899888774 56442 3478888888889888775554
No 84
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=34.69 E-value=4.3e+02 Score=25.55 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCC--eEEEEecCCCCCCCchH--HHHHHHhhhC-CCCE--------EEEcc-chHHHHHHHhCCCCC
Q 024996 140 SQREQTVLNRLKQGE--IVALISDAGTPGISDPG--TELAKLCVDE-KIPV--------VPIPG-ASAFVAALSASGLAT 205 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~--~Vv~Ls~~GDP~i~s~~--~~Lv~~l~~~-gi~v--------evIPG-ISS~~aaaA~~Gipl 205 (259)
.+.++..++++++.. +=+++| .|||+.-+.. .+|++++++- .+++ .++|. |+ ...+..++-.-
T Consensus 143 ~~~~~~al~YIa~hPeI~eVllS-GGDPL~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt--~~L~~~l~~~~ 219 (369)
T COG1509 143 KEEWDKALDYIAAHPEIREVLLS-GGDPLSLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRIT--DELCEILGKSR 219 (369)
T ss_pred HHHHHHHHHHHHcCchhheEEec-CCCccccCHHHHHHHHHHHhcCCceeEEEeecccceechhhcc--HHHHHHHhccC
Confidence 345677778877644 347786 9999999876 5888888762 1111 12232 23 33344444432
Q ss_pred cceEEEEeecCCCcchH----HHHHhhhCCCCeE----EEEcCcccHHHHHHHHHHh
Q 024996 206 DEFTFVGFLPKHARSRT----ERLMLSANEVKTQ----IFYVPPHKLLQFLEETSLL 254 (259)
Q Consensus 206 ~~~~~vg~lp~~~~~~~----~~L~~l~~~~~Tl----Vl~~~~~~l~~il~~L~e~ 254 (259)
....++..+ .|.+|.. +..+.+.+.+-++ |++++.+.-.+++..|...
T Consensus 220 ~~v~~~tH~-NHp~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~ 275 (369)
T COG1509 220 KPVWLVTHF-NHPNEITPEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRA 275 (369)
T ss_pred ceEEEEccc-CChhhcCHHHHHHHHHHHHcCceeecchheecccCCCHHHHHHHHHH
Confidence 334444222 2333322 3344555554444 4777777766666666554
No 85
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=34.68 E-value=1.5e+02 Score=27.30 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=41.7
Q ss_pred HHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCC-EEEEccchHHHHHHHhCCCCCc
Q 024996 148 NRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP-VVPIPGASAFVAALSASGLATD 206 (259)
Q Consensus 148 e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~-vevIPGISS~~aaaA~~Gipl~ 206 (259)
+....+-+.++. ..|| |+..+.+..+.+.+.+ +-++|+-| ....+-.+|+|..
T Consensus 53 ~a~~~~~D~via-~GGD----GTv~evingl~~~~~~~LgilP~GT-~NdfAr~Lgip~~ 106 (301)
T COG1597 53 EAAVEGYDTVIA-AGGD----GTVNEVANGLAGTDDPPLGILPGGT-ANDFARALGIPLD 106 (301)
T ss_pred HHHhcCCCEEEE-ecCc----chHHHHHHHHhcCCCCceEEecCCc-hHHHHHHcCCCch
Confidence 334446677777 4899 7777888888888888 99999997 5888888999874
No 86
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=34.63 E-value=53 Score=26.09 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=36.3
Q ss_pred CeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhC
Q 024996 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSAS 201 (259)
Q Consensus 154 ~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~ 201 (259)
|++++. .+|-...+. ..++++++++.|.++.++---++........
T Consensus 1 k~i~l~-vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~ 46 (129)
T PF02441_consen 1 KRILLG-VTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPEG 46 (129)
T ss_dssp -EEEEE-E-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHHG
T ss_pred CEEEEE-EECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhhc
Confidence 467777 478887777 7888899999999999999888877777666
No 87
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=34.04 E-value=2.3e+02 Score=22.18 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=48.9
Q ss_pred hhHHHHHHHhh-CCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHH
Q 024996 96 ITLRALRVLKS-ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTEL 174 (259)
Q Consensus 96 LTlrAl~~L~~-ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~L 174 (259)
+....++.|++ .|+.++. ....+++.+.+. +...+...... ...+++++.+.+=|-|+..+ .|--.+ -
T Consensus 7 ~~~~~~~~l~~~~~v~~~~-~~~~~~~~~~l~-~~d~ii~~~~~--~~~~~~l~~~~~Lk~I~~~~-~G~d~i------d 75 (133)
T PF00389_consen 7 LPDEEIERLEEGFEVEFCD-SPSEEELAERLK-DADAIIVGSGT--PLTAEVLEAAPNLKLISTAG-AGVDNI------D 75 (133)
T ss_dssp -SHHHHHHHHHTSEEEEES-SSSHHHHHHHHT-TESEEEESTTS--TBSHHHHHHHTT-SEEEESS-SSCTTB-------
T ss_pred CCHHHHHHHHCCceEEEeC-CCCHHHHHHHhC-CCeEEEEcCCC--CcCHHHHhccceeEEEEEcc-cccCcc------c
Confidence 56677888888 7777775 333333444333 34433222111 11233455555444455553 453222 2
Q ss_pred HHHhhhCCCCEEEEccchHHHHH
Q 024996 175 AKLCVDEKIPVVPIPGASAFVAA 197 (259)
Q Consensus 175 v~~l~~~gi~vevIPGISS~~aa 197 (259)
++.++++||.|.-.||..+-..|
T Consensus 76 ~~~a~~~gI~V~n~~g~~~~aVA 98 (133)
T PF00389_consen 76 LEAAKERGIPVTNVPGYNAEAVA 98 (133)
T ss_dssp HHHHHHTTSEEEE-TTTTHHHHH
T ss_pred HHHHhhCeEEEEEeCCcCCcchh
Confidence 67788899999999998874433
No 88
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=33.84 E-value=1.8e+02 Score=22.14 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=22.5
Q ss_pred HhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccc
Q 024996 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (259)
Q Consensus 150 l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGI 191 (259)
..++.-+.++|..|.. ......++.+++.|+++-+|-+-
T Consensus 58 ~~~~~~~i~iS~~g~~---~~~~~~~~~a~~~g~~iv~iT~~ 96 (139)
T cd05013 58 LTPGDVVIAISFSGET---KETVEAAEIAKERGAKVIAITDS 96 (139)
T ss_pred CCCCCEEEEEeCCCCC---HHHHHHHHHHHHcCCeEEEEcCC
Confidence 3444455555555654 22355667777777777666554
No 89
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=33.76 E-value=3.8e+02 Score=24.68 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCchH--HHHHHHhhhCCCCEEEEccc-hHHHHHHHhCCCCCcceEEEEe-ecCC
Q 024996 142 REQTVLNRLKQGEIVALISDAGTPGISDPG--TELAKLCVDEKIPVVPIPGA-SAFVAALSASGLATDEFTFVGF-LPKH 217 (259)
Q Consensus 142 ~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~--~~Lv~~l~~~gi~vevIPGI-SS~~aaaA~~Gipl~~~~~vg~-lp~~ 217 (259)
..+.....++.|.+++++| .|- +.+.. ..+.+.+++.|-++.+-.|. --+....+.....+.++.+.+. .|..
T Consensus 75 v~e~~~~iL~~g~dlvv~S-vGA--LaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~l~aa~~~~~~~v~~~t~K~P~s 151 (267)
T PRK13301 75 IAEHAEGCLTAGLDMIICS-AGA--LADDALRARLIAAAEAGGARIRVPAGAIAGLDYLQAVAGRDDAEVVYESRKPVAA 151 (267)
T ss_pred HHHHHHHHHhcCCCEEEEC-hhH--hcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHHHHHhhccCceEEEEEEecChhH
Confidence 3344455567899999997 452 33322 45666666677788776664 3344444433333445554432 1222
Q ss_pred Ccch-HHHHHhhhCCCCeEEEEcCcccHHHHHHHHHHhhCCC
Q 024996 218 ARSR-TERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYS 258 (259)
Q Consensus 218 ~~~~-~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~~~~~ 258 (259)
++.. .+....+..-....++|+++ .++....||.|
T Consensus 152 l~g~~~~~~~~l~~~~~~~~~F~G~------AreA~~~fP~N 187 (267)
T PRK13301 152 WRAELPGMGIDPDTLAESRTLFSGP------AREAALRFPKN 187 (267)
T ss_pred hccChhhcccccccccCCeEEEEeC------HHHHHHHCCch
Confidence 2210 11111122234566788776 35556667765
No 90
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=33.71 E-value=1.5e+02 Score=27.33 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhh-CCC-CEEEE
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD-EKI-PVVPI 188 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~-~gi-~vevI 188 (259)
++..+.+....+.|-+.+.++ .|+|++.....++++.+++ .|+ .+.+.
T Consensus 46 eei~~~i~~~~~~gv~~V~lt-GGEPll~~~l~~li~~i~~~~gi~~v~it 95 (334)
T TIGR02666 46 EEIERLVRAFVGLGVRKVRLT-GGEPLLRKDLVELVARLAALPGIEDIALT 95 (334)
T ss_pred HHHHHHHHHHHHCCCCEEEEE-CccccccCCHHHHHHHHHhcCCCCeEEEE
Confidence 444333333334565556674 7999999777888888776 467 56654
No 91
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=33.41 E-value=1.2e+02 Score=29.03 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=69.2
Q ss_pred CCCccchhHHHHHHH--hhCCEEEEeCCCCCHHHHhhcCC-------------CCcEE-ecCCCCHHHHHHHHHHHHhCC
Q 024996 90 IGNLEDITLRALRVL--KSANVILSEDTRHSGKLLQYYNI-------------KTPLL-SYHKFNESQREQTVLNRLKQG 153 (259)
Q Consensus 90 PGdpdlLTlrAl~~L--~~ADvV~~~~~~~~~~ll~~~~~-------------~~~~i-~~~~~~~~~~~~~I~e~l~~G 153 (259)
.+|++++-...+.+. +.+|+|++-.-+.+......+++ +.+.. ... ......+++.+.+..|
T Consensus 132 ~~d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~g~~GitPl~la~~ia~~~klPlmvHig--ePp~~~dEvlerL~~G 209 (386)
T COG3964 132 LYDPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDIGEYGITPLTLALRIANDLKLPLMVHIG--EPPVLMDEVLERLRRG 209 (386)
T ss_pred hCChhhCCHHHHHHHHHhCcCcEEEEEEEeeeccccccCCchHHHHHHHHhhcCCceEEecC--CCCccHHHHHHhccCC
Confidence 467888887765554 57889988654433222222211 11211 111 1122345677888888
Q ss_pred CeEEEEecCCCCC---CCc-hHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 024996 154 EIVALISDAGTPG---ISD-PGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (259)
Q Consensus 154 ~~Vv~Ls~~GDP~---i~s-~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl 205 (259)
..+.-. ..|-|. +.+ -....+++++++|+.+.+-.|-+||+..-|+..+..
T Consensus 210 DIitHc-fngkpn~~l~~dg~vr~~vrra~erGV~fD~ghG~asfsf~vAr~aia~ 264 (386)
T COG3964 210 DIITHC-FNGKPNTILTDDGVVRAEVRRARERGVIFDAGHGRASFSFNVARRAIAN 264 (386)
T ss_pred ceeeee-ccCCCCCccccchhHHHHHHHHHhcceEEEccCCcceeeHHHHHHHHhc
Confidence 766665 455443 333 235678889999999999999999998877765543
No 92
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=31.86 E-value=2.5e+02 Score=26.63 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhC-CCCEE--EEccchHHHHHHHhCCCCCcceEEEEeec
Q 024996 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE-KIPVV--PIPGASAFVAALSASGLATDEFTFVGFLP 215 (259)
Q Consensus 139 ~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~-gi~ve--vIPGISS~~aaaA~~Gipl~~~~~vg~lp 215 (259)
..+...++...+++|-+++.+ ++|-|.+ .+++.+++. ++++- =+-|==|+.-||+..|+==.+
T Consensus 232 ~~EAlrE~~lD~~EGAD~lMV-KPal~YL-----DIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~-------- 297 (330)
T COG0113 232 RREALREIELDIEEGADILMV-KPALPYL-----DIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEE-------- 297 (330)
T ss_pred HHHHHHHHHhhHhcCCcEEEE-cCCchHH-----HHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCcchH--------
Confidence 355666777777899999999 8887654 466666653 45542 246777899999988872110
Q ss_pred CCCcchHHHHHhhhCCCCeEEEEcCcccHHHHHHHHHH
Q 024996 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSL 253 (259)
Q Consensus 216 ~~~~~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e 253 (259)
.--.+.|..+.+.+..+||. +..+++.+.|.+
T Consensus 298 ---~~vlEsL~~~kRAGAd~IiT---YfA~e~a~~L~~ 329 (330)
T COG0113 298 ---KVVLESLTSIKRAGADLIIT---YFAKEVAEWLKE 329 (330)
T ss_pred ---HHHHHHHHHHHhcCCCEEEe---ecHHHHHHHhhc
Confidence 01135667777888888875 467777777654
No 93
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=31.61 E-value=63 Score=30.57 Aligned_cols=48 Identities=31% Similarity=0.330 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCC-eEEEEecCCCCCCCch----------HHHHHHHhhhCCCCEEEEccc
Q 024996 140 SQREQTVLNRLKQGE-IVALISDAGTPGISDP----------GTELAKLCVDEKIPVVPIPGA 191 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~-~Vv~Ls~~GDP~i~s~----------~~~Lv~~l~~~gi~vevIPGI 191 (259)
.+..+++++.+++.+ +++++ +|| +|+. ..+.++++++.||+|-+|+|=
T Consensus 26 ~~~f~~~l~~a~~~~vD~vli--AGD--lFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GN 84 (390)
T COG0420 26 KKAFDELLEIAKEEKVDFVLI--AGD--LFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGN 84 (390)
T ss_pred HHHHHHHHHHHHHccCCEEEE--ccc--cccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCC
Confidence 344556666665432 44555 688 5543 245667777789999999994
No 94
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=31.25 E-value=2.8e+02 Score=26.54 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=46.2
Q ss_pred CEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCC-CeEEEEecCCCCCCCchH--HHHHHHhhhCCCC
Q 024996 108 NVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQG-EIVALISDAGTPGISDPG--TELAKLCVDEKIP 184 (259)
Q Consensus 108 DvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G-~~Vv~Ls~~GDP~i~s~~--~~Lv~~l~~~gi~ 184 (259)
-+|+++.. ....-++++++...++......-.+.++.|++ .| ++|++++ ||--.|.+ ..+++.|++.||+
T Consensus 25 ~~ilveg~-~d~~~l~~lgi~g~~i~~s~~p~~~cad~ii~---~gi~rVVi~~---D~d~~G~~~~~~~~~~L~~aGi~ 97 (360)
T PRK14719 25 IPILVEGP-NDILSLKNLKINANFITVSNTPVFQIADDLIA---ENISEVILLT---DFDRAGRVYAKNIMEEFQSRGIK 97 (360)
T ss_pred CEEEEEcc-hHHHHHHHcCCCCcEEEEeCCchHHHHHHHHH---cCCCEEEEEE---CCCCCCCccchHHHHHHHHCCCE
Confidence 47788764 34566778888767665433222334555543 35 7899984 55545543 5678899999998
Q ss_pred EE
Q 024996 185 VV 186 (259)
Q Consensus 185 ve 186 (259)
|.
T Consensus 98 V~ 99 (360)
T PRK14719 98 VN 99 (360)
T ss_pred EE
Confidence 83
No 95
>PF06842 DUF1242: Protein of unknown function (DUF1242); InterPro: IPR009653 This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.
Probab=31.14 E-value=12 Score=24.01 Aligned_cols=16 Identities=31% Similarity=0.928 Sum_probs=10.4
Q ss_pred hhhccccccCCCC-cch
Q 024996 50 YLLLCSCSQSQTS-PDF 65 (259)
Q Consensus 50 ~~~~~~~~~~~~~-~~~ 65 (259)
.++.|||||--.. |..
T Consensus 6 LL~ICTCtYir~~~P~l 22 (36)
T PF06842_consen 6 LLLICTCTYIRSIFPSL 22 (36)
T ss_pred HHHHHHhHhHHhHCccc
Confidence 4678999996433 444
No 96
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=30.97 E-value=68 Score=27.76 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCC
Q 024996 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHA 218 (259)
Q Consensus 139 ~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~ 218 (259)
.+++.+.|.+.+++..--.++- .|+ -..+.|||.++-=.-.+.-||--.|+.++ |...
T Consensus 42 T~eR~~~I~~~L~~~Ga~~vlG-~~~------------------d~~~~ip~L~~~R~~v~~~GIy~ADVVLV---PLED 99 (178)
T PF02006_consen 42 TEERVEKIAELLREHGAEEVLG-VNP------------------DASERIPGLDHERAKVSKEGIYSADVVLV---PLED 99 (178)
T ss_pred CHHHHHHHHHHHHHcCCCEeec-cCC------------------cccccCCCCCCccceECcccceeccEEEe---ccCC
Confidence 4567777777776533223331 111 01345899999888888889987787776 8888
Q ss_pred cchHHHHHhh
Q 024996 219 RSRTERLMLS 228 (259)
Q Consensus 219 ~~~~~~L~~l 228 (259)
++|.+.|...
T Consensus 100 GDR~EAL~~m 109 (178)
T PF02006_consen 100 GDRTEALVKM 109 (178)
T ss_pred CcHHHHHHHc
Confidence 8777766554
No 97
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=30.92 E-value=1.5e+02 Score=28.76 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHh----CCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEE
Q 024996 139 ESQREQTVLNRLK----QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVP 187 (259)
Q Consensus 139 ~~~~~~~I~e~l~----~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vev 187 (259)
.++..+++.+... .+..|.+. -.|+|+.+.-..++++.+++.|+.+.+
T Consensus 56 ~~evl~ev~~d~~~~~~~~ggVtis-GGGepl~~~~l~eLl~~lk~~gi~taI 107 (404)
T TIGR03278 56 PQVVLGEVQTSLGFRTGRDTKVTIS-GGGDVSCYPELEELTKGLSDLGLPIHL 107 (404)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEE-CCcccccCHHHHHHHHHHHhCCCCEEE
Confidence 3455555554432 34456555 477999999999999999999998766
No 98
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=30.42 E-value=54 Score=32.01 Aligned_cols=34 Identities=9% Similarity=0.009 Sum_probs=20.9
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeC
Q 024996 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSED 114 (259)
Q Consensus 78 ~~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~ 114 (259)
.|+-.|.|||.||+.. .+-.++ +-+..++++.+.
T Consensus 37 ~~~~DViIVGaGPAG~--~aA~~L-A~~G~~VlllEr 70 (450)
T PLN00093 37 GRKLRVAVIGGGPAGA--CAAETL-AKGGIETFLIER 70 (450)
T ss_pred CCCCeEEEECCCHHHH--HHHHHH-HhCCCcEEEEec
Confidence 3445799999999752 222221 223468888864
No 99
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=29.37 E-value=1.1e+02 Score=26.84 Aligned_cols=33 Identities=9% Similarity=-0.133 Sum_probs=25.3
Q ss_pred EEEEecCCCCCCCchH-HHHHHHhhhCCCCEEEEc
Q 024996 156 VALISDAGTPGISDPG-TELAKLCVDEKIPVVPIP 189 (259)
Q Consensus 156 Vv~Ls~~GDP~i~s~~-~~Lv~~l~~~gi~vevIP 189 (259)
-+-+| .|+|++...+ .++++.+++.|+.+-+.-
T Consensus 41 GVt~S-GGEPllq~~fl~~l~~~~k~~gi~~~leT 74 (213)
T PRK10076 41 GVTLS-GGEVLMQAEFATRFLQRLRLWGVSCAIET 74 (213)
T ss_pred EEEEe-CchHHcCHHHHHHHHHHHHHcCCCEEEEC
Confidence 34454 8999999765 688899999999876653
No 100
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=29.27 E-value=92 Score=24.37 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=21.8
Q ss_pred HHHHHHHHh--CCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 024996 143 EQTVLNRLK--QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (259)
Q Consensus 143 ~~~I~e~l~--~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIP 189 (259)
.-.+.+.+. .-..++++ +|| +-...+++.+++.|.+|.++-
T Consensus 84 ~~d~~~~~~~~~~d~ivLv--SgD----~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 84 AVDILELAYENPPDTIVLV--SGD----SDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp HHHHHHHG--GG-SEEEEE---------GGGHHHHHHHHHH--EEEEEE
T ss_pred HHHHHHHhhccCCCEEEEE--ECc----HHHHHHHHHHHHcCCEEEEEE
Confidence 334444442 23345554 699 556788888999999888875
No 101
>PRK13337 putative lipid kinase; Reviewed
Probab=28.96 E-value=2.4e+02 Score=25.70 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=34.6
Q ss_pred HhCCCeEEEEecCCCCCCCchHHHHHHHhhhC--CCCEEEEccchHHHHHHHhCCCCC
Q 024996 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDE--KIPVVPIPGASAFVAALSASGLAT 205 (259)
Q Consensus 150 l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~--gi~vevIPGISS~~aaaA~~Gipl 205 (259)
..++.+++++ ..|| |+..+.++.+... ..++-++|+-| ....+-.+|+|.
T Consensus 54 ~~~~~d~vvv-~GGD----GTl~~vv~gl~~~~~~~~lgiiP~GT-~NdfAr~lgi~~ 105 (304)
T PRK13337 54 VERKFDLVIA-AGGD----GTLNEVVNGIAEKENRPKLGIIPVGT-TNDFARALHVPR 105 (304)
T ss_pred HhcCCCEEEE-EcCC----CHHHHHHHHHhhCCCCCcEEEECCcC-HhHHHHHcCCCC
Confidence 3456567777 5899 5556666665533 46789999987 466667778874
No 102
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=28.92 E-value=23 Score=32.01 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=42.4
Q ss_pred ccccchhhhHHHHhhhC-CCccccccccchhhhhhhhhccc-cccccchhhhhcc
Q 024996 2 RLVQRLPLMANSLATTG-LSKTSWQSRPLLSFLRTQTLLNS-LSLYPKINYLLLC 54 (259)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 54 (259)
..-+.++.+++.|+..| +.++=|++|.+|.-++--.+.+. ....||||..+..
T Consensus 174 K~~~~~~~i~~~l~~~g~~~~~~~v~R~~m~~e~i~~l~~~~~~~~~Yfs~ii~~ 228 (234)
T COG2243 174 KVGRNFEKLRRLLAKLGLLDRAVYVERATMAGEKIVRLAEAERDEKPYFSTILVR 228 (234)
T ss_pred ecCCcHHHHHHHHHhcCCCceEEEEeecCCCCcEEEeccccCcccCCceEEEEEe
Confidence 34457899999999999 77777899999999887777776 4445999976654
No 103
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=28.19 E-value=3.5e+02 Score=27.37 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=32.5
Q ss_pred HHHHHHHHH-hCCC--eEEEEecCCCCCCCchHHHHHHHhhhCCCCE--EEEccchHHHH
Q 024996 142 REQTVLNRL-KQGE--IVALISDAGTPGISDPGTELAKLCVDEKIPV--VPIPGASAFVA 196 (259)
Q Consensus 142 ~~~~I~e~l-~~G~--~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~v--evIPGISS~~a 196 (259)
.++.|+.++ +.|+ +|+++ | -.|.+-| ..+++.|.+.||++ ..|+++|-+..
T Consensus 371 vV~~ill~A~~~~k~frVvVV-D-SRP~~EG--~~~lr~Lv~~GinctYv~I~a~syim~ 426 (556)
T KOG1467|consen 371 VVNMILLEAKELGKKFRVVVV-D-SRPNLEG--RKLLRRLVDRGINCTYVLINAASYIML 426 (556)
T ss_pred HHHHHHHHHHHhCcceEEEEE-e-CCCCcch--HHHHHHHHHcCCCeEEEEehhHHHHHH
Confidence 344444333 3344 57777 5 5677765 68889999998876 56677765553
No 104
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=27.89 E-value=1.5e+02 Score=25.33 Aligned_cols=36 Identities=14% Similarity=0.047 Sum_probs=25.9
Q ss_pred CeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHH
Q 024996 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV 195 (259)
Q Consensus 154 ~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~ 195 (259)
..++++ +|| +-+..+++.++++|.++++++....++
T Consensus 112 D~ivl~--SgD----~DF~p~v~~~~~~G~rv~v~~~~~~~s 147 (181)
T COG1432 112 DTIVLF--SGD----GDFIPLVEAARDKGKRVEVAGIEPMTS 147 (181)
T ss_pred CEEEEE--cCC----ccHHHHHHHHHHcCCEEEEEecCCcCH
Confidence 345555 688 445567899999999999988877333
No 105
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=27.85 E-value=4.4e+02 Score=25.39 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhh
Q 024996 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD 180 (259)
Q Consensus 139 ~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~ 180 (259)
.++..+.+.+.++.|..|+++ -.|| +...+..+.+.+.+
T Consensus 420 ~~~a~~~a~~~a~~gD~vlv~-G~g~--~~~~~~~~~~~l~~ 458 (461)
T PRK00421 420 LEDLAELLAEVLKPGDLVLTM-GAGD--ITKLARALLELLLK 458 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEE-CCCC--HHHHHHHHHHHHhh
Confidence 345556666666666555555 3666 66666666666654
No 106
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=27.66 E-value=1.4e+02 Score=25.77 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=23.8
Q ss_pred EEEecCCCCCCCchH-HHHHHHhhhCCCCEEEEc
Q 024996 157 ALISDAGTPGISDPG-TELAKLCVDEKIPVVPIP 189 (259)
Q Consensus 157 v~Ls~~GDP~i~s~~-~~Lv~~l~~~gi~vevIP 189 (259)
+.++ .|+|++.... .++++.+++.|+.+.+.-
T Consensus 69 I~~~-GGEPll~~~~~~~li~~~~~~g~~~~i~T 101 (235)
T TIGR02493 69 VTFS-GGEPLLQPEFLSELFKACKELGIHTCLDT 101 (235)
T ss_pred EEEe-CcccccCHHHHHHHHHHHHHCCCCEEEEc
Confidence 4443 6999998664 588899988888876643
No 107
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=27.37 E-value=6.1e+02 Score=25.41 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=26.9
Q ss_pred CeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHH
Q 024996 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAF 194 (259)
Q Consensus 154 ~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~ 194 (259)
+.|-++ +|--.+-+-..++.+.+.+.|+++.++|.+|..
T Consensus 221 ~~VNii--~g~~~~~gd~~eikrlL~~~Gi~~~~l~d~s~~ 259 (515)
T TIGR01286 221 GKINII--PGFETYIGNFREIKRILSLMGVGYTLLSDPEEV 259 (515)
T ss_pred CeEEEE--CCCCCCchhHHHHHHHHHHcCCCeEEccCcccc
Confidence 357777 343222344577888888899999999988753
No 108
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=26.95 E-value=3.7e+02 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=16.4
Q ss_pred HHHHHhhhCCCCEEEEccchHHHHHHHhC
Q 024996 173 ELAKLCVDEKIPVVPIPGASAFVAALSAS 201 (259)
Q Consensus 173 ~Lv~~l~~~gi~vevIPGISS~~aaaA~~ 201 (259)
.+.+.+.+.++++-+.--.|++...+..+
T Consensus 192 ~~~~~l~~~~~d~v~FtS~stv~~f~~~l 220 (381)
T PRK07239 192 RLVDAIASRGLDAVTFTSAPAVAALLERA 220 (381)
T ss_pred HHHHHHHcCCccEEEEcCHHHHHHHHHHH
Confidence 34455554456666666666666555544
No 109
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=26.74 E-value=1.6e+02 Score=22.40 Aligned_cols=64 Identities=16% Similarity=0.061 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCC--CCcceEEE
Q 024996 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGL--ATDEFTFV 211 (259)
Q Consensus 144 ~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gi--pl~~~~~v 211 (259)
+.|...-++|+.++++| .. +. -+-..+.+.|++.|+++..--=++|..+++..+.- +...+.++
T Consensus 21 e~l~~L~~~g~~~~~lT-Nn-s~--~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~vl 86 (101)
T PF13344_consen 21 EALDALRERGKPVVFLT-NN-SS--RSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKGGKKVYVL 86 (101)
T ss_dssp HHHHHHHHTTSEEEEEE-S--SS--S-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHcCCCEEEEe-CC-CC--CCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCCCCEEEEE
Confidence 33333345689999997 22 11 12257788888899987554445666666655544 22344444
No 110
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=26.68 E-value=2.7e+02 Score=29.08 Aligned_cols=84 Identities=11% Similarity=0.184 Sum_probs=49.3
Q ss_pred HHHHHhhCCEEEEeCCCCCH-H---HHhhcCCCCcEEec----CC-CCHHHHHHHHHHHHhCCCeEEEEecCCCCCCC-c
Q 024996 100 ALRVLKSANVILSEDTRHSG-K---LLQYYNIKTPLLSY----HK-FNESQREQTVLNRLKQGEIVALISDAGTPGIS-D 169 (259)
Q Consensus 100 Al~~L~~ADvV~~~~~~~~~-~---ll~~~~~~~~~i~~----~~-~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~-s 169 (259)
-.++|++=|++++.. +.+- . +++....+..++.. .. .....+++.+++++++|+.|.++.+ =-.-+. +
T Consensus 323 iF~~I~~~DiLLh~P-Y~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~ii~aL~~Aa~~Gk~V~v~ve-LkArfde~ 400 (672)
T TIGR03705 323 IFDAIRKKDILLHHP-YESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKDSPIIDALIEAAENGKEVTVVVE-LKARFDEE 400 (672)
T ss_pred HHHHHhhcCEEEECC-ccCHHHHHHHHHHHhcCCCceEEEEEEEEecCCcHHHHHHHHHHHcCCEEEEEEE-ehhhccch
Confidence 467888999999964 4442 2 33333333333221 11 1235688999999999999999853 111111 1
Q ss_pred hHHHHHHHhhhCCCCE
Q 024996 170 PGTELAKLCVDEKIPV 185 (259)
Q Consensus 170 ~~~~Lv~~l~~~gi~v 185 (259)
.-.+..+.+++.|+.|
T Consensus 401 ~ni~wa~~le~aG~~v 416 (672)
T TIGR03705 401 ANIRWARRLEEAGVHV 416 (672)
T ss_pred hhHHHHHHHHHcCCEE
Confidence 2234566788888765
No 111
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=26.67 E-value=5.4e+02 Score=27.79 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=24.4
Q ss_pred eEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 024996 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (259)
Q Consensus 155 ~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS 193 (259)
.|-++ +|.....+-..++.+.+.+.|+++.++|-+|.
T Consensus 646 ~VNli--~~~~~~~gD~~eik~lL~~~Gl~v~~vpd~s~ 682 (917)
T PRK14477 646 QVNIL--PGAHLTPADVEEIKEIVEAFGLDPVVVPDISN 682 (917)
T ss_pred cEEEe--CCCCCChhhHHHHHHHHHHcCCceEEecCccc
Confidence 46666 35544344456677777778888888886663
No 112
>PRK13059 putative lipid kinase; Reviewed
Probab=26.57 E-value=2.8e+02 Score=25.15 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=36.9
Q ss_pred HHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhh--CCCCEEEEccchHHHHHHHhCCCCC
Q 024996 147 LNRLKQGEIVALISDAGTPGISDPGTELAKLCVD--EKIPVVPIPGASAFVAALSASGLAT 205 (259)
Q Consensus 147 ~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~--~gi~vevIPGISS~~aaaA~~Gipl 205 (259)
.+.+.++.+++++ ..|| |+..+.++.+.+ .++++-+||.-|. .-.|-.+|+|.
T Consensus 50 ~~~~~~~~d~vi~-~GGD----GTv~evv~gl~~~~~~~~lgviP~GTg-NdfAr~lgi~~ 104 (295)
T PRK13059 50 FKDIDESYKYILI-AGGD----GTVDNVVNAMKKLNIDLPIGILPVGTA-NDFAKFLGMPT 104 (295)
T ss_pred HHHhhcCCCEEEE-ECCc----cHHHHHHHHHHhcCCCCcEEEECCCCH-hHHHHHhCCCC
Confidence 3444566667777 5999 666677777763 3578999999764 66666778764
No 113
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=26.51 E-value=2.6e+02 Score=26.84 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=45.0
Q ss_pred HHHHhhCCEEEEeCCCCC----HHHHhhcCCCCcEEec-----CCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchH
Q 024996 101 LRVLKSANVILSEDTRHS----GKLLQYYNIKTPLLSY-----HKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPG 171 (259)
Q Consensus 101 l~~L~~ADvV~~~~~~~~----~~ll~~~~~~~~~i~~-----~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~ 171 (259)
.+.|++-|+++... +.+ -+++.....|..+... .-.....+++.+++++++||+|.++. ---.-|..-.
T Consensus 3 f~~i~~~DiLlh~P-Y~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~~S~iv~aLi~AA~nGK~Vtv~v-ELkARFDEe~ 80 (352)
T PF13090_consen 3 FEQIRKKDILLHHP-YESFDPVVDFLREAAEDPDVLAIKITLYRVASNSPIVNALIEAAENGKQVTVLV-ELKARFDEEN 80 (352)
T ss_dssp HHHHHHS-EEEECT-TB-TCHHHHHHHHHCC-TTEEEEEEEESSS-TT-HHHHHHHHHHHTT-EEEEEE-STTSSSTTCC
T ss_pred hHHhhcCCEEEECC-ccccHHHHHHHHHHhcCCCccEEEEEEEecCCCCHHHHHHHHHHHcCCEEEEEE-EEeccccHHH
Confidence 46789999999864 443 1344444444444332 21234568899999999999999994 3322222111
Q ss_pred -HHHHHHhhhCCCCEEEEccc
Q 024996 172 -TELAKLCVDEKIPVVPIPGA 191 (259)
Q Consensus 172 -~~Lv~~l~~~gi~vevIPGI 191 (259)
..-.+++++.|+. |+=|+
T Consensus 81 Ni~Wa~~Le~aGv~--ViyG~ 99 (352)
T PF13090_consen 81 NIHWAKRLEEAGVH--VIYGV 99 (352)
T ss_dssp CCCCCHHHHHCT-E--EEE--
T ss_pred HhHHHhhHHhcCeE--EEcCC
Confidence 1123556667754 45444
No 114
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=26.36 E-value=1.7e+02 Score=28.75 Aligned_cols=108 Identities=10% Similarity=0.018 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhC--CCeEEEEecCCCCCCCch--HHHHHHHhhhC-CCC-EEEEcc--------ch-HHHHHHHhCCCCC
Q 024996 141 QREQTVLNRLKQ--GEIVALISDAGTPGISDP--GTELAKLCVDE-KIP-VVPIPG--------AS-AFVAALSASGLAT 205 (259)
Q Consensus 141 ~~~~~I~e~l~~--G~~Vv~Ls~~GDP~i~s~--~~~Lv~~l~~~-gi~-vevIPG--------IS-S~~aaaA~~Gipl 205 (259)
+.++++++++++ +-+-+++| .|||++.+. ..++++.+++- +++ +++..- |+ .+.......+
T Consensus 141 eei~~~i~yI~~~p~I~~VlLS-GGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~--- 216 (417)
T TIGR03820 141 EQILEGIEYIRNTPQIRDVLLS-GGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKKHH--- 216 (417)
T ss_pred HHHHHHHHHHHhcCCCCEEEEe-CCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCHHHHHHHHhcC---
Confidence 345556666654 44568886 999999865 45566776653 444 333322 11 1222222332
Q ss_pred cceEEEEeecCCCcch----HHHHHhhhCCCC----eEEEEcCcccHHHHHHHHHHh
Q 024996 206 DEFTFVGFLPKHARSR----TERLMLSANEVK----TQIFYVPPHKLLQFLEETSLL 254 (259)
Q Consensus 206 ~~~~~vg~lp~~~~~~----~~~L~~l~~~~~----TlVl~~~~~~l~~il~~L~e~ 254 (259)
...+... -.|.++. .+.++.+.+.+- ..|++++.+.-.+++..|.+.
T Consensus 217 -~~~v~~h-~nhp~Eit~~a~~Al~~L~~aGI~l~nQsVLLkGVND~~~~l~~L~~~ 271 (417)
T TIGR03820 217 -PVWLNTH-FNHPREITASSKKALAKLADAGIPLGNQSVLLAGVNDCPRIMKKLVHK 271 (417)
T ss_pred -CeEEEEe-CCChHhChHHHHHHHHHHHHcCCEEEeeceEECCcCCCHHHHHHHHHH
Confidence 1222211 2233321 234455554433 345777777777777766654
No 115
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=26.01 E-value=1.4e+02 Score=27.74 Aligned_cols=41 Identities=24% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHH
Q 024996 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAF 194 (259)
Q Consensus 153 G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~ 194 (259)
|..++.++ .|+|++..-..++++.+++.|..+.+.---+-+
T Consensus 72 g~~~V~i~-GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll 112 (318)
T TIGR03470 72 GAPVVSIP-GGEPLLHPEIDEIVRGLVARKKFVYLCTNALLL 112 (318)
T ss_pred CCCEEEEe-CccccccccHHHHHHHHHHcCCeEEEecCceeh
Confidence 55666674 899999987888888888877776665444433
No 116
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=26.00 E-value=4.4e+02 Score=22.87 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=55.9
Q ss_pred eEEEEecCC--CCccchhHHHHHHHh--hCCEEEEeCCCCC-----H---HHHhhcCCC-CcEEecCCCCHHHHHHHHHH
Q 024996 82 GLYLVATPI--GNLEDITLRALRVLK--SANVILSEDTRHS-----G---KLLQYYNIK-TPLLSYHKFNESQREQTVLN 148 (259)
Q Consensus 82 ~l~iVGiGP--GdpdlLTlrAl~~L~--~ADvV~~~~~~~~-----~---~ll~~~~~~-~~~i~~~~~~~~~~~~~I~e 148 (259)
+|.+||.|- -+...+..+.++... ...+++.+..... + +.++.++.. ...+.... .++...+++.+
T Consensus 1 ~l~~iGGg~~~~~~~~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~-~~~a~~~~~~~ 79 (217)
T cd03145 1 KLVLIGGAEDKYDNRAILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDS-REAANDPEVVA 79 (217)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCC-hHHcCCHHHHH
Confidence 367888884 344456666666653 5677777532211 1 122223221 11222211 01111223344
Q ss_pred HHhCCCeEEEEecCCCCCCCch------HHHHHHHhhhCCCCEEEEccchHHHHHHHhC
Q 024996 149 RLKQGEIVALISDAGTPGISDP------GTELAKLCVDEKIPVVPIPGASAFVAALSAS 201 (259)
Q Consensus 149 ~l~~G~~Vv~Ls~~GDP~i~s~------~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~ 201 (259)
.+.+ -++++++ .||+..+-. ....++..-+.|. ++-|.|+=.++.+..
T Consensus 80 ~l~~-ad~I~~~-GG~~~~~~~~l~~t~l~~~l~~~~~~G~---v~~G~SAGA~i~~~~ 133 (217)
T cd03145 80 RLRD-ADGIFFT-GGDQLRITSALGGTPLLDALRKVYRGGV---VIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHh-CCEEEEe-CCcHHHHHHHHcCChHHHHHHHHHHcCC---EEEEccHHHHhhhhc
Confidence 4443 5788884 999976632 1233333333453 578998877766543
No 117
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=24.85 E-value=65 Score=25.17 Aligned_cols=8 Identities=25% Similarity=0.414 Sum_probs=3.3
Q ss_pred CCCeEEEE
Q 024996 152 QGEIVALI 159 (259)
Q Consensus 152 ~G~~Vv~L 159 (259)
+|-++.++
T Consensus 34 ~Gi~~~vi 41 (124)
T PF02780_consen 34 EGIKAGVI 41 (124)
T ss_dssp TTCEEEEE
T ss_pred cCCceeEE
Confidence 34444443
No 118
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=24.64 E-value=1.8e+02 Score=27.02 Aligned_cols=55 Identities=20% Similarity=0.145 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCeE-EEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 024996 142 REQTVLNRLKQGEIV-ALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (259)
Q Consensus 142 ~~~~I~e~l~~G~~V-v~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~ 200 (259)
....|.++.++|++. +++ .-+.|..-| ..+.+.|.+.||++.+||= +++.+...+
T Consensus 133 v~~~l~~A~~~~k~~~V~v-~EsrP~~~G--~~~a~~L~~~GI~vtlI~D-sav~~~m~~ 188 (310)
T PRK08535 133 ALSVIKTAHEQGKDIEVIA-TETRPRNQG--HITAKELAEYGIPVTLIVD-SAVRYFMKD 188 (310)
T ss_pred HHHHHHHHHHCCCeEEEEE-ecCCchhhH--HHHHHHHHHCCCCEEEEeh-hHHHHHHHh
Confidence 334455555666643 344 468887665 6788889999999999987 444544444
No 119
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=24.57 E-value=7.9e+02 Score=25.34 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=52.4
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls 160 (259)
.++.|+|.|-+. .+=+++.+.-.+--.|..-|.. +......-.+.+++ ...+ .+++++..... .+.+.-
T Consensus 117 ~r~lIiGAG~ag--~~l~r~~~~~~~~~pV~fiDdd--~~~~g~~i~Gv~V~-----g~~~-i~~~v~~~~~~-~iiiAi 185 (588)
T COG1086 117 IRLLIIGAGSAG--DLLLRALRRDPEYTPVAFLDDD--PDLTGMKIRGVPVL-----GRIE-IERVVEELGIQ-LILIAI 185 (588)
T ss_pred CceEEEcCchHH--HHHHHHHHhCCCcceEEEECCC--hhhcCCEEeceeee-----chhH-HHHHHHHcCCc-eEEEec
Confidence 579999888644 4444554444442222221221 11111000011121 2233 55555554443 333331
Q ss_pred cCCCCCCCc-hHHHHHHHhhhCCCCEEEEccchHHHH
Q 024996 161 DAGTPGISD-PGTELAKLCVDEKIPVVPIPGASAFVA 196 (259)
Q Consensus 161 ~~GDP~i~s-~~~~Lv~~l~~~gi~vevIPGISS~~a 196 (259)
|.+.. .-.++++.+.+.|+.+.+.|.+..+..
T Consensus 186 ----ps~~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~ 218 (588)
T COG1086 186 ----PSASQEERRRILLRLARTGIAVRILPQLTDLKD 218 (588)
T ss_pred ----CCCCHHHHHHHHHHHHhcCCcEEecCcHHHHHH
Confidence 44543 335778888888999999999988776
No 120
>KOG3808 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.53 E-value=19 Score=26.28 Aligned_cols=22 Identities=27% Similarity=0.825 Sum_probs=19.1
Q ss_pred hhhccccccCCCCcchhhhhhh
Q 024996 50 YLLLCSCSQSQTSPDFSNLILE 71 (259)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~ 71 (259)
.++.|||||--+-|.|+..+.+
T Consensus 15 LLfiCTCAYlk~vpr~~swlls 36 (74)
T KOG3808|consen 15 LLFICTCAYLKSVPRFPSWLLS 36 (74)
T ss_pred HHHHHHHHHHhhcccchHHHHh
Confidence 4567999999999999998877
No 121
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=24.29 E-value=1.1e+02 Score=27.74 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=28.3
Q ss_pred CCCeEEEEecCCCCccchh--HHHHHHHh-hCCEEEEeC
Q 024996 79 LEPGLYLVATPIGNLEDIT--LRALRVLK-SANVILSED 114 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLT--lrAl~~L~-~ADvV~~~~ 114 (259)
.+|+|.|-|.|-|+|-.=| ..|+++.+ +||+++-..
T Consensus 123 ~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~at 161 (238)
T COG0528 123 EKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKAT 161 (238)
T ss_pred HcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEec
Confidence 3589999999999998766 45566665 789998853
No 122
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=24.15 E-value=2e+02 Score=30.29 Aligned_cols=121 Identities=14% Similarity=0.133 Sum_probs=72.4
Q ss_pred HhhhCCCccccccccchhh--h------hhhhhccccccccchhhhhccccccCCCCcchhhhhhhhcCCCCCCCC-eEE
Q 024996 14 LATTGLSKTSWQSRPLLSF--L------RTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEP-GLY 84 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~ 84 (259)
|=.-|+-|+=|.+-|-.+. + ==|+++.=.+.+-|+| .|+|. |- .-||..+..+=....+..+| +|-
T Consensus 593 Ll~dGiGD~i~i~~~~~~~~~~~~~~~~ILQ~~~~R~~kte~is---CPgCG-RT-~~dlq~~~~~I~~~~~hl~Gvkia 667 (733)
T PLN02925 593 LLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQGCRMRNTKTEYVS---CPSCG-RT-LFDLQEVSAEIREKTSHLPGVSIA 667 (733)
T ss_pred HHhccCcceEEEeCCCCCHHHHHHHHHHHHHHhCccccCCeEEE---CCCCC-Cc-cccHHHHHHHHHHHhhcCCCceEE
Confidence 3445888998988774332 2 1233333367777888 99998 43 45587777665554444555 577
Q ss_pred EEec---CCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCe
Q 024996 85 LVAT---PIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (259)
Q Consensus 85 iVGi---GPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~ 155 (259)
|.|+ |||.- +.||.=++-. .. .-+..|. .++.+.. ...+++.++++++.+++..+
T Consensus 668 vMGCIVNGPGEm-----------adAd~GyVG~-gp--gKI~LYv-gKecV~~-nIpeeeAvd~LIeLIKe~G~ 725 (733)
T PLN02925 668 IMGCIVNGPGEM-----------ADADFGYVGG-AP--GKIDLYV-GKEVVKR-GIAMEEATDALIQLIKDHGR 725 (733)
T ss_pred EEeeeecCCccc-----------cccccceecc-CC--CeeEEEe-cceehhc-CCCHHHHHHHHHHHHHHcCc
Confidence 7775 88853 4677666532 11 1133343 2333321 24567888999999987543
No 123
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=23.87 E-value=1.5e+02 Score=27.68 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=25.2
Q ss_pred CeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 024996 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (259)
Q Consensus 154 ~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIP 189 (259)
+.+++- -.|.|+++.-..++++.+++.|+.+.+.-
T Consensus 131 ~~v~iS-l~GEPlL~p~l~eli~~~k~~Gi~~~L~T 165 (322)
T PRK13762 131 KHVAIS-LSGEPTLYPYLPELIEEFHKRGFTTFLVT 165 (322)
T ss_pred CEEEEe-CCccccchhhHHHHHHHHHHcCCCEEEEC
Confidence 455655 46888888777788888888888776553
No 124
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=23.78 E-value=5.8e+02 Score=23.98 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=17.1
Q ss_pred chhHHHHHHHhhCCEEEEeC
Q 024996 95 DITLRALRVLKSANVILSED 114 (259)
Q Consensus 95 lLTlrAl~~L~~ADvV~~~~ 114 (259)
..+.+++++|++||+|++..
T Consensus 161 ~a~~~al~AI~~ADlIvlgP 180 (310)
T TIGR01826 161 PALREAVEAIREADLIILGP 180 (310)
T ss_pred CCCHHHHHHHHhCCEEEECC
Confidence 56799999999999888753
No 125
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.73 E-value=6.5e+02 Score=24.05 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=51.2
Q ss_pred HHHHHHHhC-CCeEEEEecCCCCCCCchH--HHHHHHhhhCCCCEEEEccch------------------HHHHHHHhCC
Q 024996 144 QTVLNRLKQ-GEIVALISDAGTPGISDPG--TELAKLCVDEKIPVVPIPGAS------------------AFVAALSASG 202 (259)
Q Consensus 144 ~~I~e~l~~-G~~Vv~Ls~~GDP~i~s~~--~~Lv~~l~~~gi~vevIPGIS------------------S~~aaaA~~G 202 (259)
+++++.+.+ |+..++| .|.|..+|+. ..+.+.+...|+.|-..-.|+ |..++||..-
T Consensus 191 ~e~L~~l~~n~~~gVvL--aGrPYh~DpeiNhgI~e~i~~~g~~IlTedsI~~~~~~~~~l~i~~~W~~hsr~y~AA~fv 268 (351)
T COG3580 191 EEVLKYLKENGEKGVVL--AGRPYHFDPEINHGIPEKINSRGIPILTEDSIPLLGEIEGPLRIVNQWKYHSRLYAAAKFV 268 (351)
T ss_pred HHHHHHHHhcCceeEEE--eCCccccCcccccchHHHHhhcCCeeeecccchhhhccccceeehhhhHHHHHHHHHHHHH
Confidence 344455544 4555555 6999999876 466777777888776555555 5666666543
Q ss_pred CCCc---ceEEEEeecCCCcchHHHHHhhhCCCC
Q 024996 203 LATD---EFTFVGFLPKHARSRTERLMLSANEVK 233 (259)
Q Consensus 203 ipl~---~~~~vg~lp~~~~~~~~~L~~l~~~~~ 233 (259)
---. .+.+++|--+++.--.+.++++++...
T Consensus 269 ak~~nlegV~l~SFgCG~Davttd~i~eIl~~~n 302 (351)
T COG3580 269 AKHPNLEGVQLVSFGCGLDAVTTDLIEEILEGHN 302 (351)
T ss_pred hcCCCeeeEEEeecccCcchhHHHHHHHHHHhCC
Confidence 3222 233444433333323466777776555
No 126
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=23.72 E-value=4.3e+02 Score=22.04 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=34.6
Q ss_pred eEEEEecCCCCccchhHHHHHHHhh------CCEEEEeCCCC-------------CHHHHhhcCCCCcEEecCC----CC
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKS------ANVILSEDTRH-------------SGKLLQYYNIKTPLLSYHK----FN 138 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~------ADvV~~~~~~~-------------~~~ll~~~~~~~~~i~~~~----~~ 138 (259)
+|.|+-+|=-....+..-..+.++. .+++-..+... ++.+++.+..+..++.++. .+
T Consensus 2 ki~i~~vGk~k~~~~~~~~~eY~kRl~~~~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~~i~Ld~~Gk~~s 81 (155)
T PF02590_consen 2 KIRIIAVGKLKEKFLKELIEEYLKRLSRYAKLEIIELKEEKIAKAQSIEKIKEKEGERILKKIPPNDYVILLDERGKQLS 81 (155)
T ss_dssp EEEEEEESSS-SHHHHHHHHHHHHHHCTTSEEEEEEE------TCHHHHHHHHHHHHHHHCTSHTTSEEEEE-TTSEE--
T ss_pred EEEEEEEeccCcHHHHHHHHHHHHHcCccCceeEEEeccccccccccHHHHHHHHHHHHHhhccCCCEEEEEcCCCccCC
Confidence 3555555655555544444444443 24555544321 1123333333333443332 23
Q ss_pred HHHHHHHHHHHHhCCC-eEEEE
Q 024996 139 ESQREQTVLNRLKQGE-IVALI 159 (259)
Q Consensus 139 ~~~~~~~I~e~l~~G~-~Vv~L 159 (259)
.++.++.|.+...+|. +++|+
T Consensus 82 S~~fA~~l~~~~~~g~~~i~F~ 103 (155)
T PF02590_consen 82 SEEFAKKLERWMNQGKSDIVFI 103 (155)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEE
T ss_pred hHHHHHHHHHHHhcCCceEEEE
Confidence 4566666666666665 77777
No 127
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=23.72 E-value=1.8e+02 Score=24.34 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCE
Q 024996 145 TVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPV 185 (259)
Q Consensus 145 ~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~v 185 (259)
.|.+.+++.|+++++-.+.+|.=. .....+.|.+.|.+|
T Consensus 8 ~i~~iL~~~K~IAvVG~S~~P~r~--sy~V~kyL~~~GY~V 46 (140)
T COG1832 8 DIAEILKSAKTIAVVGASDKPDRP--SYRVAKYLQQKGYRV 46 (140)
T ss_pred HHHHHHHhCceEEEEecCCCCCcc--HHHHHHHHHHCCCEE
Confidence 455666778899998656666544 366778888888654
No 128
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=23.63 E-value=2e+02 Score=26.68 Aligned_cols=54 Identities=24% Similarity=0.227 Sum_probs=35.5
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 024996 144 QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (259)
Q Consensus 144 ~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~ 200 (259)
..+.++.++|++.-+...-+.|..-| ..+.+.|.+.||++.+||= +++.+....
T Consensus 130 ~~l~~a~~~~~~f~V~v~EsrP~~~G--~~~a~~L~~~gI~vtlI~D-sa~~~~m~~ 183 (301)
T TIGR00511 130 SVIKTAFEQGKDIEVIATETRPRKQG--HITAKELRDYGIPVTLIVD-SAVRYFMKE 183 (301)
T ss_pred HHHHHHHHcCCcEEEEEecCCCcchH--HHHHHHHHHCCCCEEEEeh-hHHHHHHHh
Confidence 34455556666433222468887654 7788899999999999986 445554443
No 129
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=23.39 E-value=6.5e+02 Score=23.97 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=74.8
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEec
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISD 161 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~ 161 (259)
++-|+|+| ...++.++-.+++- |.++....+....++.++++.+. ++... .++..+.+.+. -++++.+
T Consensus 169 ~V~I~G~G--GlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~-~i~~~---~~~~~~~~~~~----~d~ii~t- 236 (339)
T COG1064 169 WVAVVGAG--GLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADH-VINSS---DSDALEAVKEI----ADAIIDT- 236 (339)
T ss_pred EEEEECCc--HHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcE-EEEcC---CchhhHHhHhh----CcEEEEC-
Confidence 68899988 67889888888888 99999853222123344554332 22211 12233333332 4677774
Q ss_pred CCCCCCCchHHHHHHHhhhCCCCEEEEccchH--HHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhhhCCCCeEEE--
Q 024996 162 AGTPGISDPGTELAKLCVDEKIPVVPIPGASA--FVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF-- 237 (259)
Q Consensus 162 ~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS--~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~TlVl-- 237 (259)
.| +--+ ..-++.++..| .+ ++=|... .........+-+.+..+.|.+.....+-.+.|+-..+++-.-.+
T Consensus 237 v~-~~~~---~~~l~~l~~~G-~~-v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~e 310 (339)
T COG1064 237 VG-PATL---EPSLKALRRGG-TL-VLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKIKPEILE 310 (339)
T ss_pred CC-hhhH---HHHHHHHhcCC-EE-EEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCceeeEEe
Confidence 45 3222 33445555544 22 2223221 00001111122334566665544433334555555554433323
Q ss_pred EcCcccHHHHHHHHHH
Q 024996 238 YVPPHKLLQFLEETSL 253 (259)
Q Consensus 238 ~~~~~~l~~il~~L~e 253 (259)
..+...+.+..+.+.+
T Consensus 311 ~~~l~~in~A~~~m~~ 326 (339)
T COG1064 311 TIPLDEINEAYERMEK 326 (339)
T ss_pred eECHHHHHHHHHHHHc
Confidence 3344556666666654
No 130
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=23.36 E-value=4.4e+02 Score=21.95 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=42.7
Q ss_pred EccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhhhCCCCeEEEEcCcccHHHHHHHH
Q 024996 188 IPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEET 251 (259)
Q Consensus 188 IPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L 251 (259)
-|-+--+..++.++|++.++..+++. +..++....+.+-..|.+..+..+.+.++.+
T Consensus 141 KP~p~~~~~~~~~~~~~p~~~l~vgD-------~~~di~aA~~aG~~~i~~~~~~~~~~~l~~~ 197 (199)
T PRK09456 141 KPEARIYQHVLQAEGFSAADAVFFDD-------NADNIEAANALGITSILVTDKQTIPDYFAKV 197 (199)
T ss_pred CCCHHHHHHHHHHcCCChhHeEEeCC-------CHHHHHHHHHcCCEEEEecCCccHHHHHHhc
Confidence 37788899999999999999888742 2345777777788888887777777666543
No 131
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=23.20 E-value=1.2e+02 Score=25.45 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=28.2
Q ss_pred CeEEEEecCCC--CccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCC
Q 024996 81 PGLYLVATPIG--NLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNI 127 (259)
Q Consensus 81 g~l~iVGiGPG--dpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~ 127 (259)
.++.++|.|.| ..+..-....+.++++|.|.+=| ..+.+++..++.
T Consensus 100 ~pv~~~g~g~gp~~~~~~~~~~~~~l~~~~~i~vRD-~~S~~~l~~~g~ 147 (286)
T PF04230_consen 100 KPVIILGQGIGPFRSEEFKKLLRRILSKADYISVRD-EYSYELLKKLGI 147 (286)
T ss_pred CCeEEECceECccCCHHHHHHHHHHHhCCCEEEECC-HHHHHHHHHcCC
Confidence 34555554443 34555567888889999988833 345555665554
No 132
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=23.16 E-value=4.2e+02 Score=25.68 Aligned_cols=97 Identities=21% Similarity=0.195 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCC---CCc--hHHHHHHHhhh-CCCCEEEEccchHHHHHHHhCCCCCcceEEEE-
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPG---ISD--PGTELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFVG- 212 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~---i~s--~~~~Lv~~l~~-~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg- 212 (259)
+.....|...+++|-+|+++|..|.|- .-+ ......++|.+ .|.+|..+|.+..-.+-.+...+...++..+-
T Consensus 34 ~~~lpTI~~l~~~gakvVl~sH~GRPk~~~~~~~~SL~~va~~L~~~L~~~V~f~~d~~g~~~~~~i~~l~~G~IllLEN 113 (384)
T PF00162_consen 34 RAALPTIKYLLEKGAKVVLMSHLGRPKGKGYDDFFSLEPVAERLSKLLGKPVKFVDDCIGEEAEEAIESLKPGEILLLEN 113 (384)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---SSTTTSSSTGGG-SHHHHHHHHHHHTSEEEEESTSSSHHHHHHHHTSSTTEEEEESS
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCCcccCCCCcccChHHHHHHHHHHhCCCeeeccccCCHHHHHHHhccCCCCEEEEee
Confidence 345566777778898999999889993 222 12333444443 26789999986322222233334444554431
Q ss_pred --eecCCC----cchHHHHHhhhCCCCeEE
Q 024996 213 --FLPKHA----RSRTERLMLSANEVKTQI 236 (259)
Q Consensus 213 --~lp~~~----~~~~~~L~~l~~~~~TlV 236 (259)
|.+... .......+.++...+..|
T Consensus 114 lRf~~eE~~~~~~~~~~f~~~LA~l~DvyV 143 (384)
T PF00162_consen 114 LRFYPEEEGKKEKNDTEFARKLASLADVYV 143 (384)
T ss_dssp GGGSTTTTSEEHHTHHHHHHHHHTT-SEEE
T ss_pred eccccccccccccccHHHHHHHHHhCCEEE
Confidence 234333 223344556666666554
No 133
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=23.09 E-value=28 Score=21.01 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=12.9
Q ss_pred cchhhhHHHHhhhCCCccccc
Q 024996 5 QRLPLMANSLATTGLSKTSWQ 25 (259)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (259)
.++++||+.|...|+...-|.
T Consensus 7 ~K~kS~R~~L~e~g~~~~flk 27 (29)
T PF07966_consen 7 KKFKSMRETLREKGTLEEFLK 27 (29)
T ss_dssp EE---HHHHHHHTT-HHHHHC
T ss_pred cCCchHHHHHHHcCchHHHHH
Confidence 478999999999997654443
No 134
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=23.07 E-value=4.3e+02 Score=21.80 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=57.8
Q ss_pred HHHHHHHhCCCeEEEEec-CCCCCCC-c------hHHHHHHHhhhCCCCEE-EE--------------ccchHHHHHHHh
Q 024996 144 QTVLNRLKQGEIVALISD-AGTPGIS-D------PGTELAKLCVDEKIPVV-PI--------------PGASAFVAALSA 200 (259)
Q Consensus 144 ~~I~e~l~~G~~Vv~Ls~-~GDP~i~-s------~~~~Lv~~l~~~gi~ve-vI--------------PGISS~~aaaA~ 200 (259)
+.|...-++|.+++++|. +|.+--. . ....+.+.+.+.|+.+. ++ |-+..+..++..
T Consensus 36 e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~ 115 (161)
T TIGR01261 36 PALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKLLEPYLKK 115 (161)
T ss_pred HHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 333333356889999972 1222211 1 12344555666677753 32 667889999999
Q ss_pred CCCCCcceEEEEeecCCCcchHHHHHhhhCCCCeEEEEcCcc
Q 024996 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPH 242 (259)
Q Consensus 201 ~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~TlVl~~~~~ 242 (259)
.|+++++..++|. +..+++...+.+-..+.+....
T Consensus 116 ~~~~~~e~l~IGD-------~~~Di~~A~~aGi~~i~~~~~~ 150 (161)
T TIGR01261 116 NLIDKARSYVIGD-------RETDMQLAENLGIRGIQYDEEE 150 (161)
T ss_pred cCCCHHHeEEEeC-------CHHHHHHHHHCCCeEEEEChhh
Confidence 9999988888853 2356666666777777776554
No 135
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=22.95 E-value=3e+02 Score=25.43 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCC-C-CEEEE
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEK-I-PVVPI 188 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~g-i-~vevI 188 (259)
++..+.+.+..+.|-..+.++ .|.|++.....++++.+++.+ + .+.+.
T Consensus 48 eei~~li~~~~~~Gv~~I~~t-GGEPllr~dl~~li~~i~~~~~l~~i~it 97 (329)
T PRK13361 48 EELAWLAQAFTELGVRKIRLT-GGEPLVRRGCDQLVARLGKLPGLEELSLT 97 (329)
T ss_pred HHHHHHHHHHHHCCCCEEEEE-CcCCCccccHHHHHHHHHhCCCCceEEEE
Confidence 343333333334565556664 899999887788888887754 3 45443
No 136
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=22.70 E-value=2.6e+02 Score=21.87 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCeEEEEecC--CCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHH
Q 024996 144 QTVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (259)
Q Consensus 144 ~~I~e~l~~G~~Vv~Ls~~--GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aa 197 (259)
+.+++...+++.|.+++|- |.|+ ....+.+.+. -++++|-|+.--...
T Consensus 49 ~~~i~~~~~~~~vivltDl~GGSp~-----n~a~~~~~~~-~~~~vIsG~NLpmll 98 (116)
T TIGR00824 49 NAALADLDTEEEVLFLVDIFGGSPY-----NAAARIIVDK-PHMDVIAGVNLPLLL 98 (116)
T ss_pred HHHHHhcCCCCCEEEEEeCCCCCHH-----HHHHHHHhhc-CCEEEEEecCHHHHH
Confidence 3444445566778888763 5552 1122222222 268899999754433
No 137
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=22.54 E-value=1.9e+02 Score=22.89 Aligned_cols=39 Identities=10% Similarity=-0.017 Sum_probs=24.2
Q ss_pred HHHHHhC-CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 024996 146 VLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (259)
Q Consensus 146 I~e~l~~-G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIP 189 (259)
+.+.+.+ +-.+++| .+||- -...+++.+++.|.+|.++.
T Consensus 91 ~~~~~~~~~~d~ivL-vSgD~----Df~~~i~~lr~~G~~V~v~~ 130 (149)
T cd06167 91 ALELAYKRRIDTIVL-VSGDS----DFVPLVERLRELGKRVIVVG 130 (149)
T ss_pred HHHHhhhcCCCEEEE-EECCc----cHHHHHHHHHHcCCEEEEEc
Confidence 3444433 2234444 36884 45677888888899887764
No 138
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=22.52 E-value=7.1e+02 Score=24.04 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=53.9
Q ss_pred HHHHHHHh--CCCeEEEEecCCC-CCCCchH----HHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecC
Q 024996 144 QTVLNRLK--QGEIVALISDAGT-PGISDPG----TELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPK 216 (259)
Q Consensus 144 ~~I~e~l~--~G~~Vv~Ls~~GD-P~i~s~~----~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~ 216 (259)
+..++.++ .+++++++ || +-+.+.. .++.+.+.+.+++.-+.-|..+-..+. ..+. .. + .+.
T Consensus 342 ~aaL~~l~~~~~r~i~Vl---G~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~G~~~~~~~~-~~~~---~~-~---~~~ 410 (453)
T PRK10773 342 TAAAQVLAEMPGYRVMVV---GDMAELGAESEACHRQVGEAAKAAGIDKVLSVGKLSHAISE-ASGV---GE-H---FAD 410 (453)
T ss_pred HHHHHHHHhCCCCEEEEE---CChhhcchHHHHHHHHHHHHHHHcCCCEEEEEChhHHHHHH-hcCC---Ce-e---ECC
Confidence 33344443 35667665 55 4444333 344555566678877778865432222 1221 11 1 121
Q ss_pred CCcchHHHHHhhhCCCCe-EEEEcCcc--cHHHHHHHHHH
Q 024996 217 HARSRTERLMLSANEVKT-QIFYVPPH--KLLQFLEETSL 253 (259)
Q Consensus 217 ~~~~~~~~L~~l~~~~~T-lVl~~~~~--~l~~il~~L~e 253 (259)
..+..+.+...++.++. +|+.|+.+ +++++++.|.+
T Consensus 411 -~~~~~~~l~~~~~~gd~~~vL~Kgsr~~~le~i~~~l~~ 449 (453)
T PRK10773 411 -KTALIARLKALLAEHQVITILVKGSRSAAMEEVVRALQE 449 (453)
T ss_pred -HHHHHHHHHHhhcCCCceEEEEEeCCcCCHHHHHHHHHH
Confidence 11123456667777775 78888876 59999988865
No 139
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=22.43 E-value=2.8e+02 Score=21.64 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=29.6
Q ss_pred CeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 024996 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (259)
Q Consensus 154 ~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGIS 192 (259)
-.++++ -.|....+- ..++.+.+++.||.+|+.+-..
T Consensus 53 peilii-GTG~~~~~~-~~~~~~~l~~~gi~vE~m~T~~ 89 (109)
T cd05560 53 PEVILL-GTGERQRFP-PPALLAPLLARGIGVEVMDTQA 89 (109)
T ss_pred CCEEEE-ecCCCCCcC-CHHHHHHHHHcCCeEEEECHHH
Confidence 468888 589887776 5788899999999999987553
No 140
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=22.31 E-value=4.1e+02 Score=25.26 Aligned_cols=92 Identities=17% Similarity=0.241 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhC-CCCEE--EEccchHHHHHHHhCCCCCcceEEEEeecC
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE-KIPVV--PIPGASAFVAALSASGLATDEFTFVGFLPK 216 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~-gi~ve--vIPGISS~~aaaA~~Gipl~~~~~vg~lp~ 216 (259)
.+...++...+++|-+++.+ ++|-|.+ .+++.+++. ++++- -+-|==|+.-+++..|+==.+
T Consensus 228 ~eAlre~~~D~~EGAD~lMV-KPal~YL-----DIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D~~--------- 292 (323)
T PRK09283 228 REALREVALDIEEGADMVMV-KPALPYL-----DIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWIDEE--------- 292 (323)
T ss_pred HHHHHHHHhhHHhCCCEEEE-cCCchHH-----HHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCCHH---------
Confidence 45566666677899999999 8887654 467777663 56653 356777888888888872100
Q ss_pred CCcchHHHHHhhhCCCCeEEEEcCcccHHHHHHHH
Q 024996 217 HARSRTERLMLSANEVKTQIFYVPPHKLLQFLEET 251 (259)
Q Consensus 217 ~~~~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L 251 (259)
.-..+.+..+.+.+..+||. +..+++.++|
T Consensus 293 --~~~~Esl~~~kRAGAd~IiT---YfA~~~a~~L 322 (323)
T PRK09283 293 --RVVLESLLSIKRAGADGILT---YFAKDAARWL 322 (323)
T ss_pred --HHHHHHHHHHHhcCCCEEEe---cCHHHHHHhh
Confidence 00135666777788888775 3455555443
No 141
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=22.08 E-value=2.3e+02 Score=23.59 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=30.2
Q ss_pred HhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHH
Q 024996 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAF 194 (259)
Q Consensus 150 l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~ 194 (259)
....++|+++ +.|-....+--.++.+.+...+++++++||-...
T Consensus 115 ~~~y~~~~~I-dtg~~~~~~~~~~~~~~a~~~~l~~~~~~g~l~~ 158 (166)
T PF07796_consen 115 FGHYKRVVLI-DTGVYDEEDFEEKVREFAEFLGLPIEEIPGDLDL 158 (166)
T ss_pred HhCCCeEEEE-ecccccchHHHHHHHHHHHHhCCCEEEEeCCHHH
Confidence 3567889999 7776555543344555555579999999996544
No 142
>PLN03034 phosphoglycerate kinase; Provisional
Probab=22.07 E-value=8.1e+02 Score=24.59 Aligned_cols=70 Identities=17% Similarity=0.088 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCC----CCchHHHHHHHhhh-CCCCEEEEccchHHHHHHHhCCCCCcceEEE
Q 024996 141 QREQTVLNRLKQGEIVALISDAGTPG----ISDPGTELAKLCVD-EKIPVVPIPGASAFVAALSASGLATDEFTFV 211 (259)
Q Consensus 141 ~~~~~I~e~l~~G~~Vv~Ls~~GDP~----i~s~~~~Lv~~l~~-~gi~vevIPGISS~~aaaA~~Gipl~~~~~v 211 (259)
.....|...+++|-+|+++|..|.|- .++ .....++|.+ .|.+|..+|-+-.-.+..+.-.+...++..+
T Consensus 119 a~lpTI~~L~~~gakvVl~SHlGRPkg~~~~~S-L~pva~~Ls~lL~~~V~fv~d~~G~~~~~~i~~l~~GeVlLL 193 (481)
T PLN03034 119 AAIPTIKYLISNGAKVILSSHLGRPKGVTPKFS-LAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLL 193 (481)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCCCCCCcccC-HHHHHHHHHHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEE
Confidence 34456777778899999999889883 222 2334444444 3778998986654444445555566565444
No 143
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=21.79 E-value=5.3e+02 Score=23.70 Aligned_cols=96 Identities=14% Similarity=0.142 Sum_probs=55.6
Q ss_pred CCeEEEEecCC---CCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeE
Q 024996 80 EPGLYLVATPI---GNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIV 156 (259)
Q Consensus 80 ~g~l~iVGiGP---GdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~V 156 (259)
.|+|.|+=+++ |....+.+.+++.+..+.-+++.-.-.+.-.+..++..-. +.|. ..+..++++..|.+|
T Consensus 157 ~G~v~i~~vP~~~~GGsr~~dld~~~el~~s~d~iaAmG~~a~va~rklgiePd-i~Fg------~~~a~ieAa~rGl~v 229 (260)
T COG1497 157 KGEVTIVKVPGVAEGGSRKVDLDRLKELSASEDIIAAMGTEALVALRKLGIEPD-IEFG------TLEAAIEAAVRGLSV 229 (260)
T ss_pred CCeEEEEECCCcccCcccccchHHHHHhhcccchhhhhhHHHHHHHHHcCCCCC-eeec------ccHHHHHHHhcCCcE
Confidence 58888887654 3444455566555554432333211111112233443221 2232 234467788899999
Q ss_pred EEEecCCCCCCCchHHHHHHHhhhCCCCEEEE
Q 024996 157 ALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (259)
Q Consensus 157 v~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevI 188 (259)
.+++ .+ ....++.+.+.++|++++|.
T Consensus 230 lvv~-t~-----~ml~~~~~~l~~~~~eY~V~ 255 (260)
T COG1497 230 LVVI-TR-----RMLRYLLRKLEEEGLEYEVK 255 (260)
T ss_pred EEEE-eH-----HHHHHHHHHHHhcCCccEee
Confidence 9995 33 46678899999999998775
No 144
>PRK15482 transcriptional regulator MurR; Provisional
Probab=21.68 E-value=5.8e+02 Score=22.77 Aligned_cols=94 Identities=10% Similarity=0.036 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcch
Q 024996 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSR 221 (259)
Q Consensus 142 ~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~ 221 (259)
..+++.+.+.+-++|.++. .|. -+....++...+...|.++...+........+. .+.-+|+.++--.++...+-
T Consensus 124 ~l~~~~~~i~~A~~I~i~G-~G~--S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~--~~~~~Dv~i~iS~sg~t~~~ 198 (285)
T PRK15482 124 RLQKIIEVISKAPFIQITG-LGG--SALVGRDLSFKLMKIGYRVACEADTHVQATVSQ--ALKKGDVQIAISYSGSKKEI 198 (285)
T ss_pred HHHHHHHHHHhCCeeEEEE-eCh--hHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHh--cCCCCCEEEEEeCCCCCHHH
Confidence 3455666666666777763 453 233556777777778888887765543322222 34445664432234443333
Q ss_pred HHHHHhhhCCCCeEEEEcC
Q 024996 222 TERLMLSANEVKTQIFYVP 240 (259)
Q Consensus 222 ~~~L~~l~~~~~TlVl~~~ 240 (259)
.+.++.+.+.+..+|....
T Consensus 199 ~~~~~~a~~~g~~iI~IT~ 217 (285)
T PRK15482 199 VLCAEAARKQGATVIAITS 217 (285)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 3445555555555555443
No 145
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=21.68 E-value=2.4e+02 Score=22.41 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=29.9
Q ss_pred HhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024996 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (259)
Q Consensus 150 l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPG 190 (259)
+..+-.|+++ -.|....+-...++.+.+++.||++++-+-
T Consensus 55 l~~~peivli-GTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T 94 (117)
T cd05126 55 LEEGVEVIVI-GTGQSGALKVPPETVEKLEKRGVEVLVLPT 94 (117)
T ss_pred HhcCCCEEEE-cCCCCccccCCHHHHHHHHhcCCEEEEcCh
Confidence 3344568888 489887665667888899999999988653
No 146
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=21.66 E-value=4.6e+02 Score=26.63 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=29.3
Q ss_pred CeEEEE--ecCCCCccchhHHHHHHHhhCCEEEEeC
Q 024996 81 PGLYLV--ATPIGNLEDITLRALRVLKSANVILSED 114 (259)
Q Consensus 81 g~l~iV--GiGPGdpdlLTlrAl~~L~~ADvV~~~~ 114 (259)
.++|.+ .+|||...++|-.|+....+-.+++.|.
T Consensus 82 rr~~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPg 117 (617)
T COG3962 82 RRIYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPG 117 (617)
T ss_pred ceeeEEecccCCcHHHHHHHHHHHHhhcCceEeecc
Confidence 456654 6899999999999999999999999874
No 147
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=21.59 E-value=2e+02 Score=26.77 Aligned_cols=40 Identities=5% Similarity=0.053 Sum_probs=27.0
Q ss_pred HHHHHHHHHhC--CCeEEEEecCCCCCCCc--hHHHHHHHhhhCC
Q 024996 142 REQTVLNRLKQ--GEIVALISDAGTPGISD--PGTELAKLCVDEK 182 (259)
Q Consensus 142 ~~~~I~e~l~~--G~~Vv~Ls~~GDP~i~s--~~~~Lv~~l~~~g 182 (259)
.++++++++++ +-+-+++| .|||++.+ ...++++.+++.+
T Consensus 123 e~~~~i~~i~~~~~I~~VilS-GGDPl~~~~~~L~~ll~~l~~i~ 166 (321)
T TIGR03822 123 ELDAAFAYIADHPEIWEVILT-GGDPLVLSPRRLGDIMARLAAID 166 (321)
T ss_pred HHHHHHHHHHhCCCccEEEEe-CCCcccCCHHHHHHHHHHHHhCC
Confidence 34455566653 44567886 99999975 4568888887653
No 148
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=21.53 E-value=67 Score=24.44 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhC----CCeEEEEecC-CCCCCCchHHHHHHHhhh------CCCCEEEEcc
Q 024996 139 ESQREQTVLNRLKQ----GEIVALISDA-GTPGISDPGTELAKLCVD------EKIPVVPIPG 190 (259)
Q Consensus 139 ~~~~~~~I~e~l~~----G~~Vv~Ls~~-GDP~i~s~~~~Lv~~l~~------~gi~vevIPG 190 (259)
.++..+++.+..+- .-++=++ |. |||+..+...+|.++++- .++-+.|.||
T Consensus 22 ~e~L~~~v~~~c~~~~~q~ft~kw~-DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ihvfp~ 83 (83)
T cd06404 22 LEELCNEVRDMCRFHNDQPFTLKWI-DEEGDPCTISSQMELEEAFRLYELNKDSELNIHVFPG 83 (83)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEEE-CCCCCceeecCHHHHHHHHHHHHhcCcccEEEEecCC
Confidence 34555555554432 2245555 54 999999999888777652 3566677765
No 149
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.40 E-value=7.4e+02 Score=23.88 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=24.1
Q ss_pred eEEEEecCCCCCCCch-HHHHHHHhhhCCCCEEEEccchH
Q 024996 155 IVALISDAGTPGISDP-GTELAKLCVDEKIPVVPIPGASA 193 (259)
Q Consensus 155 ~Vv~Ls~~GDP~i~s~-~~~Lv~~l~~~gi~vevIPGISS 193 (259)
.|-++ .|-. .+.. ..++.+.+++.|+++.++|..|.
T Consensus 162 ~VNli--~~~~-~~~d~~~el~~lL~~~Gl~~~~~~d~s~ 198 (435)
T cd01974 162 KLNII--PGFD-TYAGNMREIKRLLELMGVDYTILPDTSD 198 (435)
T ss_pred eEEEE--CCCC-CCcchHHHHHHHHHHcCCCEEEeccccc
Confidence 57776 2322 2233 57888888889999988876654
No 150
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=21.21 E-value=3.9e+02 Score=20.51 Aligned_cols=85 Identities=12% Similarity=0.159 Sum_probs=38.4
Q ss_pred HHHHHHhh-CCEEEEeCCCCCHHHH-hhcCCCCcEEecCCCC----HHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHH
Q 024996 99 RALRVLKS-ANVILSEDTRHSGKLL-QYYNIKTPLLSYHKFN----ESQREQTVLNRLKQGEIVALISDAGTPGISDPGT 172 (259)
Q Consensus 99 rAl~~L~~-ADvV~~~~~~~~~~ll-~~~~~~~~~i~~~~~~----~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~ 172 (259)
.+.+.+++ .+.++. |-|...+.- ....++..-+.+.... .....+.+.......+.|+++|..| .+..
T Consensus 5 el~~~l~~~~~~~vI-DvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G-----~rs~ 78 (117)
T cd01522 5 EAWALLQADPQAVLV-DVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSG-----NRSI 78 (117)
T ss_pred HHHHHHHhCCCeEEE-ECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCC-----ccHH
Confidence 44556666 478888 556544433 2111222222221110 1223334433334567788886333 1223
Q ss_pred HHHHHhhhCCCC-EEEEc
Q 024996 173 ELAKLCVDEKIP-VVPIP 189 (259)
Q Consensus 173 ~Lv~~l~~~gi~-vevIP 189 (259)
.....+++.|+. +..+.
T Consensus 79 ~aa~~L~~~G~~~v~~l~ 96 (117)
T cd01522 79 AAAEAAAQAGFTNVYNVL 96 (117)
T ss_pred HHHHHHHHCCCCeEEECc
Confidence 344556666663 54333
No 151
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=21.11 E-value=2.7e+02 Score=23.92 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcch---HHHHHhhhCCCCeEEEEc
Q 024996 172 TELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSR---TERLMLSANEVKTQIFYV 239 (259)
Q Consensus 172 ~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~---~~~L~~l~~~~~TlVl~~ 239 (259)
...-+.|.+.|+++++|+==. ++..+.++ ++|...--. .+.|++..++++++|+..
T Consensus 33 ~~~y~al~~~gi~vDvv~~~~-----------dL~~Ykll-v~P~~~~l~~~~~~~L~~yV~~GG~li~~~ 91 (207)
T PF08532_consen 33 RGWYRALRELGIPVDVVSPDD-----------DLSGYKLL-VLPSLYILSPEFAERLRAYVENGGTLILTP 91 (207)
T ss_dssp HHHHHHHHTTT--EEEE-TTS-------------TT-SEE-EES--SC--HHH---HHHHHT-SS-EEE-T
T ss_pred HHHHHHHHHcCCceEEecCcC-----------CcccCcEE-EEeeEEEEChHHHHHHHHHHHCCCEEEEEc
Confidence 445567788899999987321 34444444 346543222 245888889999998743
No 152
>PRK13761 hypothetical protein; Provisional
Probab=20.84 E-value=1.1e+02 Score=27.68 Aligned_cols=40 Identities=30% Similarity=0.422 Sum_probs=31.1
Q ss_pred EEEccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhh
Q 024996 186 VPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLS 228 (259)
Q Consensus 186 evIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l 228 (259)
..|||.++-=.-.+.-||--.|+.++ |...++|.+.|.+.
T Consensus 131 ~~ip~L~~~R~~v~~~GIy~ADVVLV---PLEDGDR~EaL~~m 170 (248)
T PRK13761 131 ARIPGLDHERAKVSEDGIYSADVVLV---PLEDGDRTEALVKM 170 (248)
T ss_pred CcCCCCCCccceECcccceeccEEEe---cCCCCcHHHHHHHc
Confidence 45899999888888888877787776 88888777766654
No 153
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=20.84 E-value=4.9e+02 Score=24.71 Aligned_cols=92 Identities=16% Similarity=0.240 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhC-CCCEE--EEccchHHHHHHHhCCCCCcceEEEEeecC
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE-KIPVV--PIPGASAFVAALSASGLATDEFTFVGFLPK 216 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~-gi~ve--vIPGISS~~aaaA~~Gipl~~~~~vg~lp~ 216 (259)
.+...++...+++|-+++.+ ++|-|.+ .+++.+++. ++++- -+-|==|+.-++|..|+-=.+
T Consensus 225 ~eAlre~~~Di~EGAD~lMV-KPal~YL-----DIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~--------- 289 (320)
T cd04823 225 REALREVALDIAEGADMVMV-KPGMPYL-----DIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDED--------- 289 (320)
T ss_pred HHHHHHHHhhHHhCCCEEEE-cCCchHH-----HHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCcHH---------
Confidence 44556666667899999999 8886644 466666653 56653 356777888889988872100
Q ss_pred CCcchHHHHHhhhCCCCeEEEEcCcccHHHHHHHH
Q 024996 217 HARSRTERLMLSANEVKTQIFYVPPHKLLQFLEET 251 (259)
Q Consensus 217 ~~~~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L 251 (259)
.--.+.+..+.+.+..+||. +..+++.++|
T Consensus 290 --~~~~Esl~~ikRAGAd~IiT---Y~A~~~a~wl 319 (320)
T cd04823 290 --KVMLESLLAFKRAGADGILT---YFAKEAAEWL 319 (320)
T ss_pred --HHHHHHHHHHHhcCCCEEee---ccHHHHHHhh
Confidence 00135677777888888875 3455555444
No 154
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.79 E-value=6.6e+02 Score=23.06 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=56.0
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcE-EecCCCCHHHHHHHHHHHHh-------C
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPL-LSYHKFNESQREQTVLNRLK-------Q 152 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~-i~~~~~~~~~~~~~I~e~l~-------~ 152 (259)
.++.+|+ |.+. ..+..+...++++.+.+...... ...+.. ....+. +.+. .+.......+.+++. .
T Consensus 66 ~~V~~i~-~~~S--~~~~a~~~~~~~~~vp~i~~~~~-~~~~~~-~~~~~~~Fr~~-~~~~~~~~~l~~~~~~~~~~~~~ 139 (351)
T cd06334 66 DGAVAFQ-GWST--GITEALIPKIAADKIPLMSGSYG-ATLADD-GAVFPYNFPVG-PTYSDQARALVQYIAEQEGGKLK 139 (351)
T ss_pred CCcEEEe-cCcH--HHHHHhhHHHhhcCCcEEecccc-hhhccC-CCCCCeeeeCC-CCHHHHHHHHHHHHHHhcccCCC
Confidence 3455564 4432 45677778888888776642211 112210 011111 1111 112222222333321 2
Q ss_pred CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEE----EEccchHHHHHHHhCC
Q 024996 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVV----PIPGASAFVAALSASG 202 (259)
Q Consensus 153 G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~ve----vIPGISS~~aaaA~~G 202 (259)
.++|+++. .-++.-.+....+.+.+++.|+++. +-+|.+.+....+++.
T Consensus 140 ~~kvaiv~-~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~ 192 (351)
T cd06334 140 GKKIALVY-HDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIR 192 (351)
T ss_pred CCeEEEEe-CCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHH
Confidence 57899984 6666444444556666777776642 2345556665555543
No 155
>PRK05637 anthranilate synthase component II; Provisional
Probab=20.64 E-value=97 Score=27.03 Aligned_cols=6 Identities=33% Similarity=0.573 Sum_probs=3.3
Q ss_pred ccchHH
Q 024996 189 PGASAF 194 (259)
Q Consensus 189 PGISS~ 194 (259)
||+.+.
T Consensus 52 gGPg~~ 57 (208)
T PRK05637 52 PGPGHP 57 (208)
T ss_pred CCCCCH
Confidence 555554
No 156
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=20.27 E-value=5e+02 Score=21.42 Aligned_cols=90 Identities=6% Similarity=0.038 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcc
Q 024996 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS 220 (259)
Q Consensus 141 ~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~ 220 (259)
+..+++.+.+.+.++|.++. .|.- +....++...+...|+++..+.... ...+.-+|..++--.++...+
T Consensus 21 ~~l~~~~~~i~~a~~I~i~G-~G~S--~~~A~~~~~~l~~~g~~~~~~~~~~-------~~~~~~~D~vI~iS~sG~t~~ 90 (179)
T cd05005 21 EELDKLISAILNAKRIFVYG-AGRS--GLVAKAFAMRLMHLGLNVYVVGETT-------TPAIGPGDLLIAISGSGETSS 90 (179)
T ss_pred HHHHHHHHHHHhCCeEEEEe-cChh--HHHHHHHHHHHHhCCCeEEEeCCCC-------CCCCCCCCEEEEEcCCCCcHH
Confidence 34566667776667887773 5532 3445677777777788888775421 112333455443112333222
Q ss_pred hHHHHHhhhCCCCeEEEEcC
Q 024996 221 RTERLMLSANEVKTQIFYVP 240 (259)
Q Consensus 221 ~~~~L~~l~~~~~TlVl~~~ 240 (259)
-.+.++.+.+.+.++|....
T Consensus 91 ~i~~~~~ak~~g~~iI~IT~ 110 (179)
T cd05005 91 VVNAAEKAKKAGAKVVLITS 110 (179)
T ss_pred HHHHHHHHHHCCCeEEEEEC
Confidence 23444555555555554443
No 157
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=2.1e+02 Score=23.18 Aligned_cols=82 Identities=15% Similarity=0.281 Sum_probs=49.6
Q ss_pred hCCEEEEeCCCCCHHHHhhcCCCCcEE-ecCCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCC
Q 024996 106 SANVILSEDTRHSGKLLQYYNIKTPLL-SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIP 184 (259)
Q Consensus 106 ~ADvV~~~~~~~~~~ll~~~~~~~~~i-~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~ 184 (259)
+.|++++++.++.++. +.+. +... ..+.. ..+++.+.+.++-.+.++ -.|--..-+...+-.+.+++.+++
T Consensus 20 ~~DIvi~~dG~v~rr~-K~ls--krK~GTSHkl----~~eEle~~lee~~E~ivv-GTG~~G~l~l~~ea~e~~r~k~~~ 91 (121)
T COG1504 20 EHDIVIRPDGKVERRE-KELS--KRKYGTSHKL----ALEELEELLEEGPEVIVV-GTGQSGMLELSEEAREFFRKKGCE 91 (121)
T ss_pred cccEEEecCCceehhh-hhhh--hhhcCccccc----CHHHHHHHHhcCCcEEEE-ecCceeEEEeCHHHHHHHHhcCCe
Confidence 5699999886554321 1111 1110 00111 133444555667778888 478777777777888888888988
Q ss_pred EEEEccchHHH
Q 024996 185 VVPIPGASAFV 195 (259)
Q Consensus 185 vevIPGISS~~ 195 (259)
+...|-.=++-
T Consensus 92 vi~~pT~EAik 102 (121)
T COG1504 92 VIELPTPEAIK 102 (121)
T ss_pred EEEeCCHHHHH
Confidence 88887665543
No 158
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=20.04 E-value=1.9e+02 Score=28.15 Aligned_cols=64 Identities=11% Similarity=-0.061 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCC
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gip 204 (259)
++..+.+.+.-+.-.+.+++ -+|--.+.-.+.-.++.|.+.|+...+|-|.|+=...+|.++.-
T Consensus 68 ~~kl~ff~~~r~~fGrtAlv-lsGGg~~G~~h~Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~ 131 (391)
T cd07229 68 QAKLDFFHDTRQSFGRTALV-LQGGSIFGLCHLGVVKALWLRGLLPRIITGTATGALIAALVGVH 131 (391)
T ss_pred HHHHHHHHHHHHhcCCEEEE-ecCcHHHHHHHHHHHHHHHHcCCCCceEEEecHHHHHHHHHHcC
Confidence 44444444443443345555 24543333333466899999999999999999888877777763
Done!