Query 024996
Match_columns 259
No_of_seqs 215 out of 1536
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 18:09:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kwp_A Predicted methyltransfe 100.0 7.4E-39 2.5E-43 292.9 19.5 181 78-258 13-193 (296)
2 1wyz_A Putative S-adenosylmeth 100.0 6.8E-38 2.3E-42 278.0 16.9 179 79-257 1-191 (242)
3 4e16_A Precorrin-4 C(11)-methy 100.0 1.4E-35 4.9E-40 264.6 19.6 179 79-258 3-188 (253)
4 3ndc_A Precorrin-4 C(11)-methy 100.0 8.8E-35 3E-39 261.4 19.8 174 81-258 4-187 (264)
5 1cbf_A Cobalt-precorrin-4 tran 100.0 1.5E-33 5.1E-38 255.4 21.6 178 80-258 20-204 (285)
6 1s4d_A Uroporphyrin-III C-meth 100.0 8.9E-34 3E-38 256.6 19.2 180 77-258 11-204 (280)
7 2ybo_A Methyltransferase; SUMT 100.0 3.6E-33 1.2E-37 254.5 20.3 175 79-258 23-213 (294)
8 1ve2_A Uroporphyrin-III C-meth 100.0 3.6E-33 1.2E-37 245.6 17.4 166 79-257 1-178 (235)
9 3nut_A Precorrin-3 methylase; 100.0 9.2E-33 3.1E-37 246.0 18.2 179 76-258 4-194 (251)
10 2qbu_A Precorrin-2 methyltrans 100.0 3.7E-32 1.3E-36 237.8 17.3 170 79-254 1-191 (232)
11 2e0n_A Precorrin-2 C20-methylt 100.0 6.5E-32 2.2E-36 241.0 17.3 170 79-254 3-195 (259)
12 1pjq_A CYSG, siroheme synthase 100.0 1.6E-31 5.5E-36 256.8 19.0 175 79-258 214-402 (457)
13 1va0_A Uroporphyrin-III C-meth 100.0 1.2E-31 4E-36 236.6 16.0 166 81-258 1-179 (239)
14 3nd1_A Precorrin-6A synthase/C 100.0 1.6E-31 5.3E-36 242.2 9.9 166 77-247 18-216 (275)
15 2zvb_A Precorrin-3 C17-methylt 100.0 1.6E-30 5.3E-35 237.6 16.1 176 80-258 1-206 (295)
16 1vhv_A Diphthine synthase; str 100.0 1.7E-29 5.8E-34 226.9 14.8 178 75-256 7-197 (268)
17 2z6r_A Diphthine synthase; met 100.0 2.7E-29 9.3E-34 224.7 14.3 157 82-242 2-179 (265)
18 2npn_A Putative cobalamin synt 100.0 2.1E-29 7.2E-34 224.0 12.1 160 80-246 2-194 (251)
19 3i4t_A Diphthine synthase; nia 100.0 2.1E-29 7.1E-34 230.0 11.3 154 80-237 20-183 (292)
20 1wde_A Probable diphthine synt 100.0 4.5E-28 1.5E-32 220.6 14.6 168 81-252 8-192 (294)
21 3hh1_A Tetrapyrrole methylase 99.9 1.5E-27 5.1E-32 189.8 12.5 114 78-191 3-117 (117)
22 2bb3_A Cobalamin biosynthesis 99.9 5.6E-26 1.9E-30 198.9 11.2 153 80-244 21-173 (221)
23 3ffy_A Putative tetrapyrrole ( 99.3 8E-12 2.7E-16 98.9 8.4 69 189-258 1-69 (115)
24 3mvn_A UDP-N-acetylmuramate:L- 80.7 13 0.00043 29.6 9.7 91 81-179 64-162 (163)
25 2fpr_A Histidine biosynthesis 71.2 13 0.00045 29.5 7.3 101 144-252 49-174 (176)
26 3gdw_A Sigma-54 interaction do 63.4 10 0.00035 30.0 5.0 55 138-197 43-102 (139)
27 3sho_A Transcriptional regulat 62.3 55 0.0019 25.7 10.8 93 141-240 27-122 (187)
28 3gx1_A LIN1832 protein; APC633 57.6 8.3 0.00029 30.1 3.5 55 138-197 43-100 (130)
29 2o8r_A Polyphosphate kinase; s 57.5 17 0.00057 36.5 6.4 90 100-191 336-433 (705)
30 1byr_A Protein (endonuclease); 56.5 28 0.00097 26.5 6.5 49 140-189 40-88 (155)
31 1j5p_A Aspartate dehydrogenase 51.1 30 0.001 30.2 6.3 98 140-258 71-174 (253)
32 2wm8_A MDP-1, magnesium-depend 48.0 96 0.0033 24.1 11.6 91 151-254 82-179 (187)
33 1tq1_A AT5G66040, senescence-a 46.7 21 0.00072 26.9 4.2 102 94-205 18-127 (129)
34 1gmx_A GLPE protein; transfera 46.0 77 0.0026 22.7 7.1 84 95-190 6-91 (108)
35 2d59_A Hypothetical protein PH 44.5 1.1E+02 0.0036 23.6 9.7 97 81-185 23-127 (144)
36 1vee_A Proline-rich protein fa 44.1 89 0.003 23.4 7.5 90 95-190 6-107 (134)
37 2i6x_A Hydrolase, haloacid deh 43.6 1.1E+02 0.0038 23.6 9.2 57 189-252 151-207 (211)
38 2pju_A Propionate catabolism o 42.7 96 0.0033 26.2 8.1 107 91-204 46-174 (225)
39 3ipr_A PTS system, IIA compone 38.5 59 0.002 25.6 5.8 47 145-197 50-103 (150)
40 2q5c_A NTRC family transcripti 36.9 1.7E+02 0.0058 23.8 10.4 106 92-204 37-162 (196)
41 3kwm_A Ribose-5-phosphate isom 36.4 79 0.0027 27.0 6.5 58 142-206 16-74 (224)
42 1pdo_A Mannose permease; phosp 35.3 59 0.002 24.9 5.2 54 139-196 41-97 (135)
43 3dfz_A SIRC, precorrin-2 dehyd 35.0 1.3E+02 0.0043 25.5 7.6 88 81-188 32-121 (223)
44 3l7o_A Ribose-5-phosphate isom 34.0 46 0.0016 28.5 4.6 58 142-206 8-69 (225)
45 3eme_A Rhodanese-like domain p 33.9 40 0.0014 24.1 3.7 36 150-190 53-88 (103)
46 3g5j_A Putative ATP/GTP bindin 33.8 1.4E+02 0.0046 21.7 8.1 36 150-190 85-122 (134)
47 3lqk_A Dipicolinate synthase s 33.8 37 0.0013 28.4 4.0 37 152-189 6-42 (201)
48 3kkj_A Amine oxidase, flavin-c 33.5 25 0.00086 27.3 2.8 33 79-114 1-33 (336)
49 2ab1_A Hypothetical protein; H 33.3 65 0.0022 24.7 5.0 43 150-193 58-100 (122)
50 2fsx_A RV0390, COG0607: rhodan 33.1 1.6E+02 0.0054 22.3 8.1 35 151-190 78-113 (148)
51 2duw_A Putative COA-binding pr 32.2 1.6E+02 0.0056 22.5 7.4 26 81-107 14-39 (145)
52 3iix_A Biotin synthetase, puta 31.5 80 0.0027 27.5 6.0 66 138-204 85-154 (348)
53 1x92_A APC5045, phosphoheptose 31.4 1.9E+02 0.0066 22.8 9.4 51 141-194 33-89 (199)
54 3hix_A ALR3790 protein; rhodan 31.3 82 0.0028 22.6 5.2 90 102-205 5-97 (106)
55 3foj_A Uncharacterized protein 30.7 43 0.0015 23.8 3.4 36 150-190 53-88 (100)
56 3mcu_A Dipicolinate synthase, 30.3 41 0.0014 28.4 3.7 42 152-194 4-45 (207)
57 3op6_A Uncharacterized protein 30.3 1.2E+02 0.0042 23.4 6.4 36 172-207 5-42 (152)
58 1qxn_A SUD, sulfide dehydrogen 30.0 1.3E+02 0.0043 22.8 6.3 99 94-205 23-127 (137)
59 1mio_B Nitrogenase molybdenum 30.0 1.2E+02 0.004 28.2 7.2 50 141-193 152-206 (458)
60 3pdi_B Nitrogenase MOFE cofact 29.9 1.7E+02 0.006 27.1 8.4 50 141-192 148-206 (458)
61 2yci_X 5-methyltetrahydrofolat 29.9 2.7E+02 0.0093 24.0 9.2 109 82-193 49-174 (271)
62 2yva_A DNAA initiator-associat 29.9 2E+02 0.0069 22.5 8.3 47 141-190 29-81 (196)
63 1jeo_A MJ1247, hypothetical pr 29.6 1.9E+02 0.0066 22.3 8.0 89 141-239 28-116 (180)
64 3mtq_A Putative phosphoenolpyr 29.3 98 0.0033 24.8 5.7 52 142-200 66-119 (159)
65 1m3s_A Hypothetical protein YC 28.6 2.1E+02 0.0071 22.2 7.8 87 142-240 26-114 (186)
66 3lfh_A Manxa, phosphotransfera 27.5 64 0.0022 25.3 4.2 50 144-200 51-103 (144)
67 2qip_A Protein of unknown func 26.3 89 0.003 24.6 4.9 39 145-189 101-140 (165)
68 3bed_A PTS system, IIA compone 26.3 1.6E+02 0.0056 22.5 6.4 50 146-200 55-104 (142)
69 3en0_A Cyanophycinase; serine 26.2 1.3E+02 0.0044 26.5 6.4 118 77-200 23-160 (291)
70 1e0c_A Rhodanese, sulfurtransf 26.1 1.8E+02 0.006 24.3 7.1 91 95-190 10-115 (271)
71 1iuk_A Hypothetical protein TT 25.9 2.2E+02 0.0075 21.7 7.7 97 81-185 14-120 (140)
72 3u7q_B Nitrogenase molybdenum- 25.8 1.5E+02 0.0051 28.3 7.2 38 154-193 222-259 (523)
73 3hhe_A Ribose-5-phosphate isom 25.5 1.4E+02 0.0049 26.0 6.4 57 143-206 32-91 (255)
74 3hn7_A UDP-N-acetylmuramate-L- 25.3 2.9E+02 0.0098 25.9 9.1 40 138-180 480-519 (524)
75 4fak_A Ribosomal RNA large sub 25.3 2.7E+02 0.0092 22.4 9.5 78 82-159 6-110 (163)
76 3ff4_A Uncharacterized protein 25.1 1.9E+02 0.0065 21.8 6.4 96 81-189 5-110 (122)
77 1tv8_A MOAA, molybdenum cofact 25.1 1.5E+02 0.0051 25.7 6.6 37 151-188 64-102 (340)
78 1xdp_A Polyphosphate kinase; P 23.9 80 0.0027 31.4 5.0 85 100-185 331-424 (687)
79 3can_A Pyruvate-formate lyase- 23.7 71 0.0024 25.0 3.8 27 162-188 11-38 (182)
80 2pjm_A Ribose-5-phosphate isom 23.6 91 0.0031 26.6 4.7 58 142-206 10-71 (226)
81 4hg2_A Methyltransferase type 23.5 3E+02 0.01 23.1 8.1 42 138-180 113-154 (257)
82 3ilm_A ALR3790 protein; rhodan 23.5 2.1E+02 0.0072 21.7 6.5 94 100-207 7-103 (141)
83 1qgu_B Protein (nitrogenase mo 23.1 1E+02 0.0036 29.2 5.5 36 155-193 219-255 (519)
84 3td9_A Branched chain amino ac 22.6 2.7E+02 0.0093 23.6 7.8 43 143-185 136-181 (366)
85 3gk5_A Uncharacterized rhodane 22.0 1.7E+02 0.0057 21.0 5.4 49 150-206 52-100 (108)
86 1vim_A Hypothetical protein AF 21.9 2.6E+02 0.0088 22.3 7.1 47 141-190 35-81 (200)
87 3flh_A Uncharacterized protein 21.8 1.8E+02 0.006 21.4 5.6 94 99-205 21-117 (124)
88 3tr9_A Dihydropteroate synthas 20.9 4.5E+02 0.015 23.4 9.3 92 98-192 94-203 (314)
89 2yx0_A Radical SAM enzyme; pre 20.7 1.7E+02 0.0058 25.5 6.1 37 154-191 143-179 (342)
90 3hyw_A Sulfide-quinone reducta 20.5 33 0.0011 31.2 1.3 34 79-114 1-35 (430)
91 3c8f_A Pyruvate formate-lyase 20.0 75 0.0026 25.6 3.3 34 156-190 72-107 (245)
92 2f8m_A Ribose 5-phosphate isom 20.0 1.4E+02 0.0048 25.7 5.2 58 141-206 15-79 (244)
No 1
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=100.00 E-value=7.4e-39 Score=292.91 Aligned_cols=181 Identities=45% Similarity=0.736 Sum_probs=167.1
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 024996 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (259)
Q Consensus 78 ~~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv 157 (259)
.|+|+||+||+||||+++||+||+++|++||+|+++++++++++++.++++++++.++++++++..+.|++.+++|++|+
T Consensus 13 ~~~G~LylVG~GpG~~~~lT~rA~~~L~~aDvI~~edtr~~~~lL~~~~~~~~~i~~~~~~~~~~~~~li~~l~~G~~Va 92 (296)
T 3kwp_A 13 ETGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFEITTKQISFHEHNTQERIPQLIAKLKQGMQIA 92 (296)
T ss_dssp -CCCEEEECCBCSSCGGGCCHHHHHHHHHSSEEEESCHHHHHHHHHHTTCCCEEEECSTTTHHHHHHHHHHHHHTTCEEE
T ss_pred ccCceEEEeccCCCCccchhhHHHHHHhHhhhhhhhccccHHHHhhheeeeeeeeehhhcchhhHhHHHHHHHhcCceEE
Confidence 47899999999999999999999999999999999887777889999888888888888888888899999999999999
Q ss_pred EEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhhhCCCCeEEE
Q 024996 158 LISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIF 237 (259)
Q Consensus 158 ~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~TlVl 237 (259)
++|++|||++||++.++++.+.+.|++|++||||||+++|++++|+||++|.|+|++|....++...|+.+.+.+.|+||
T Consensus 93 ~lsdaGdP~i~~~g~~lv~~~~~~gi~v~viPGiSA~~aA~a~~Glp~~~f~f~g~~p~~~~~r~~~l~~l~~~~~tlV~ 172 (296)
T 3kwp_A 93 QVSDAGMPSISDPGHELVNACIDAHIPVVPLPGANAGLTALIASGLAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIF 172 (296)
T ss_dssp EECSSBCTTSSHHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHSSCCSSEEEEEECCSSHHHHHHHHHTTTTCCSEEEE
T ss_pred EeccCCCCCCCCCchHHHHHHHHcCCCeeeCCCcccchHHHHhccCCCCceeEEeeccCCcHHHHHHHHHhhcCCceeEe
Confidence 99779999999999999999999999999999999999999999999999999999887654456789999999999999
Q ss_pred EcCcccHHHHHHHHHHhhCCC
Q 024996 238 YVPPHKLLQFLEETSLLFGYS 258 (259)
Q Consensus 238 ~~~~~~l~~il~~L~e~~~~~ 258 (259)
|++++++.++++.|.+.||++
T Consensus 173 y~~~~rl~~~l~~L~~~~g~~ 193 (296)
T 3kwp_A 173 YEAPHRLKKTLQNLAAGFGDE 193 (296)
T ss_dssp EECGGGHHHHHHHHHHHHCTT
T ss_pred eeCcHHHHHHHHHHHHHhCCc
Confidence 999999999999999988753
No 2
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=100.00 E-value=6.8e-38 Score=278.00 Aligned_cols=179 Identities=23% Similarity=0.452 Sum_probs=149.5
Q ss_pred CCCeEEEEecCCCCcc---chhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCc-----EEecCCCCHHHHHHHHHHHH
Q 024996 79 LEPGLYLVATPIGNLE---DITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-----LLSYHKFNESQREQTVLNRL 150 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpd---lLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~-----~i~~~~~~~~~~~~~I~e~l 150 (259)
|+|+||+||+|||||+ +||+||+++|++||+|+|++++.++++++.+..+++ .+..++.++++..+.+++.+
T Consensus 1 M~G~ly~VG~GpGd~~~~dLlTlrA~~~L~~aDvI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (242)
T 1wyz_A 1 METALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTFYPLNKHTSPEDISGYLKPL 80 (242)
T ss_dssp -CCSEEEECCCSSSSCHHHHSCTHHHHHHTTCCEEEESCHHHHHHHHHHHCSSSCTTCCCCEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEEecCCCCCcccCccCHHHHHHHHhCCEEEEeCCcchHHHHHhcCCCCceeeeeeecccccCHHHHHHHHHHHH
Confidence 5699999999999998 799999999999999999887777888887765444 34455556677788999999
Q ss_pred hCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhhhC
Q 024996 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSAN 230 (259)
Q Consensus 151 ~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~ 230 (259)
++|++||++|++|||++||++.++++.+++.|+++++||||||+++|+|++|+|+++|.|+|++|....++.+.|+.+++
T Consensus 81 ~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPGiSs~~aa~a~~G~p~~~f~~~g~~p~~~~~~~~~l~~l~~ 160 (242)
T 1wyz_A 81 AGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGPSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQ 160 (242)
T ss_dssp HTTCCEEEECC-------CHHHHHHHHHHHTTCCEEECCCCCHHHHHHHHHTSCSSSEEEEEECCSSTTHHHHHHHHHHH
T ss_pred HcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCcHHHHHHHHHHcCCCCCeEEEEEEcCCCccchHHHHHHHhc
Confidence 99999999977899999999999999999999999999999999999999999999999999888655434467888777
Q ss_pred C----CCeEEEEcCcccHHHHHHHHHHhhCC
Q 024996 231 E----VKTQIFYVPPHKLLQFLEETSLLFGY 257 (259)
Q Consensus 231 ~----~~TlVl~~~~~~l~~il~~L~e~~~~ 257 (259)
. +.|+||||+++++.++++.|.+.++.
T Consensus 161 ~~~~~~~t~vl~~~~~~~~~~~~~l~~~~~~ 191 (242)
T 1wyz_A 161 RVYAESQTQLFIETPYRNHKMIEDILQNCRP 191 (242)
T ss_dssp HHHHHTCEEEEEECGGGHHHHHHHHHHHSCS
T ss_pred ccccCCCeEEEEEcHHHHHHHHHHHHhcCCC
Confidence 7 89999999999999999999887764
No 3
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=100.00 E-value=1.4e-35 Score=264.63 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=152.2
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~ 158 (259)
|+|+||+||+||||+++||+||+++|++||+|++++++.++.+++.+..+++++....++++++.+.|.+.+++|++|++
T Consensus 3 ~~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~V~~ 82 (253)
T 4e16_A 3 AMNKVHFVGAGPGDKELITLKGYKLLSNADVVIYAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIENNKSVVR 82 (253)
T ss_dssp -CCCEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCGGGGGGSCTTCEEEEGGGCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 57999999999999999999999999999999998878887888877777776665556778888999999999999999
Q ss_pred EecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------cceEEEEeecCCCcchHHHHHhhhCCC
Q 024996 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLMLSANEV 232 (259)
Q Consensus 159 Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl------~~~~~vg~lp~~~~~~~~~L~~l~~~~ 232 (259)
++ +|||++||++.++++.+++.|+++++||||||+++|+|++|+|| +++.++++......+..+.|+.+.+.+
T Consensus 83 l~-~GDP~i~~~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~ 161 (253)
T 4e16_A 83 LQ-TGDFSIYGSIREQVEDLNKLNIDYDCTPGVSSFLGAASSLGVEYTVPEISQSVIITRMEGRTPVPEKESIQSYAKHQ 161 (253)
T ss_dssp EE-SBCTTTTCCHHHHHHHHHHHTCCEEEECCCCHHHHHHHHHTCCSCBTTTBSCEEEEEC---CCCCGGGSHHHHHTTC
T ss_pred Ee-CCCCccccCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHhCCCcccCCccceEEEEeccCCCCcchHHHHHHHhcCC
Confidence 95 99999999999999999999999999999999999999999999 467666432222111234688888899
Q ss_pred CeEEEEcCcccHHHHHHHHHH-hhCCC
Q 024996 233 KTQIFYVPPHKLLQFLEETSL-LFGYS 258 (259)
Q Consensus 233 ~TlVl~~~~~~l~~il~~L~e-~~~~~ 258 (259)
.|+|+|++++++.++++.|.+ .++++
T Consensus 162 ~t~vl~~~~~~~~~i~~~L~~~g~~~~ 188 (253)
T 4e16_A 162 TSMVIFLSVQEIEKVVSKLLEGGYPKD 188 (253)
T ss_dssp SEEEEEECSTTHHHHHHHHHHTTCCTT
T ss_pred CeEEEECcHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999 46543
No 4
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=100.00 E-value=8.8e-35 Score=261.43 Aligned_cols=174 Identities=18% Similarity=0.154 Sum_probs=152.8
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEe
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALIS 160 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls 160 (259)
++||+||+||||+++||+||+++|++||+|+|+++++++++++.+..+++++.+..++++++.+.|.+.+++|++||+|+
T Consensus 4 m~l~iVG~GpG~~~lLT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~Va~L~ 83 (264)
T 3ndc_A 4 MTVHFIGAGPGAADLITIRGRDLIASCPVCLYAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLH 83 (264)
T ss_dssp CCEEEEECBSSCGGGSBHHHHHHHHHCSEEEECSTTSCGGGGGGSCTTCEEEECTTSCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cEEEEEEcCCCChHHHHHHHHHHHHcCCEEEEECCCCCHHHHhhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 47999999999999999999999999999999888888888888877788877666778889999999999999999995
Q ss_pred cCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------ceEEEEeecCCCc----chHHHHHhhhC
Q 024996 161 DAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHAR----SRTERLMLSAN 230 (259)
Q Consensus 161 ~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~------~~~~vg~lp~~~~----~~~~~L~~l~~ 230 (259)
+|||++|+++.++++.+.+.|++++|||||||+++|+|++|+||+ ++.++ +.|+. +..+.|+.+++
T Consensus 84 -~GDP~iyg~~~~l~~~l~~~gi~veviPGiSs~~aaaA~lG~plt~~~~~~~~~~~---s~~~~~~~~~~~~~l~~l~~ 159 (264)
T 3ndc_A 84 -SGDLSIWSAMGEQLRRLRALNIPYDVTPGVPSFAAAAATLGAELTLPGVAQSVILT---RTSGRASAMPAGETLENFAR 159 (264)
T ss_dssp -SBCTTSSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHTCCSCBTTTBCCEEEE---ECCTTTCCCCTTCCHHHHHT
T ss_pred -CCCCccccHHHHHHHHHHhCCCCEEEeCCHHHHHHHHHHhCCCccCCCceeEEEEE---eccCCCCCcchHHHHHHHhc
Confidence 999999999999999999999999999999999999999999994 45554 33332 11246888888
Q ss_pred CCCeEEEEcCcccHHHHHHHHHHhhCCC
Q 024996 231 EVKTQIFYVPPHKLLQFLEETSLLFGYS 258 (259)
Q Consensus 231 ~~~TlVl~~~~~~l~~il~~L~e~~~~~ 258 (259)
.+.|+|||++.+++.++++.|.+.++.+
T Consensus 160 ~~~tlvl~~~~~~~~~i~~~L~~~~~~~ 187 (264)
T 3ndc_A 160 TGAVLAIHLSVHVLDEVVQKLVPHYGED 187 (264)
T ss_dssp TTCEEEEESCGGGHHHHHHHHHHHHCTT
T ss_pred CCCcEEEecCHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999999987754
No 5
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase, cobalamin biosynth methyltransferase; HET: SAH; 2.40A {Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Probab=100.00 E-value=1.5e-33 Score=255.38 Aligned_cols=178 Identities=19% Similarity=0.254 Sum_probs=151.4
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEE
Q 024996 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (259)
Q Consensus 80 ~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~L 159 (259)
.++||+||+||||+++||+||+++|++||+|+|++++.++++++.+..+++++....+++++..+.|.+.+++|++|++|
T Consensus 20 ~~~l~lVG~GpGd~~~LT~~A~~~L~~AdvV~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~Vv~L 99 (285)
T 1cbf_A 20 HMKLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEMVGTMLDRMREGKMVVRV 99 (285)
T ss_dssp TSEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECTTTSCHHHHTTSCTTCEEEECTTCCHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHhcCCCCEEEecCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 35899999999999999999999999999999988888888888777677776655567788889999999999999999
Q ss_pred ecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------cceEEEEeecCCCcchHHHHHhhhCCCC
Q 024996 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLMLSANEVK 233 (259)
Q Consensus 160 s~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl------~~~~~vg~lp~~~~~~~~~L~~l~~~~~ 233 (259)
+ +|||++||++.++++.+.+.|+++++||||||+++|+|++|+|| +++.++++.........+.++.+.+.+.
T Consensus 100 ~-~GDP~i~g~~~~l~~~l~~~gi~veviPGiSS~~aa~a~~G~pl~~~~~~~~~~~~~~~g~~~~~~~~~l~~l~~~~~ 178 (285)
T 1cbf_A 100 H-TGDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKC 178 (285)
T ss_dssp E-SBCTTTTCCCHHHHHHHHHTTCEEEEECCCCHHHHHHHHTTCCSCBTTTBCCEEEEECCSSSCCCGGGCHHHHHTTCS
T ss_pred e-CCCccccccHHHHHHHHHHCCCcEEEECCchHHHHHHHHcCCCcccCCcceeEEEeccCCCCCcchHHHHHHHhcCCC
Confidence 5 89999999999999999999999999999999999999999998 4566653322111122356788888899
Q ss_pred eEEEEcCcccHHHHHHHHHH-hhCCC
Q 024996 234 TQIFYVPPHKLLQFLEETSL-LFGYS 258 (259)
Q Consensus 234 TlVl~~~~~~l~~il~~L~e-~~~~~ 258 (259)
|+|||++++++.++++.|.+ .|+++
T Consensus 179 tlvl~~~~~~~~~i~~~L~~~g~~~~ 204 (285)
T 1cbf_A 179 TIALFLSSTLTKKVMKEFINAGWSED 204 (285)
T ss_dssp EEEEESCTTCHHHHHHHHHHTTCCTT
T ss_pred eEEEECcHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999998 56643
No 6
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=100.00 E-value=8.9e-34 Score=256.58 Aligned_cols=180 Identities=19% Similarity=0.187 Sum_probs=150.1
Q ss_pred CCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecC------CCCHHHHHHHHHHHH
Q 024996 77 GPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH------KFNESQREQTVLNRL 150 (259)
Q Consensus 77 ~~~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~------~~~~~~~~~~I~e~l 150 (259)
...+|+||+||+|||||++||+||+++|++||+|+| ++++++++++.++.+++++... ...++++.+.+++.+
T Consensus 11 ~~~~g~l~lVG~GpGd~~lLTl~A~~~L~~ADvV~~-d~~~~~~ll~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~ 89 (280)
T 1s4d_A 11 ALEKGSVWLVGAGPGDPGLLTLHAANALRQADVIVH-DALVNEDCLKLARPGAVLEFAGKRGGKPSPKQRDISLRLVELA 89 (280)
T ss_dssp CCCSSCEEEEECBSSCTTSSBHHHHHHHHHCSEEEE-CSCSCTTGGGGSSTTCCEEECSCCC--CCCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEEecCCCCHHHHHHHHHHHHHhCCEEEE-cCCCCHHHHHhccCCCEEEeccccccccccCHHHHHHHHHHHH
Confidence 344589999999999999999999999999999999 5677888888777666666432 345678888899999
Q ss_pred hCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcce---EEEEeecCCCcch----HH
Q 024996 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARSR----TE 223 (259)
Q Consensus 151 ~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~---~~vg~lp~~~~~~----~~ 223 (259)
++|++|++++ .|||++|+++.++++.+++.|+++++||||||+++|+|++|+||++. ..+.+++.|..+. ..
T Consensus 90 ~~G~~Vv~L~-~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (280)
T 1s4d_A 90 RAGNRVLRLK-GGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHDSSGLVPDRI 168 (280)
T ss_dssp HTTCCEEEEE-SBCTTSSSSHHHHHHHHHTTTCCEEEECCCCTTTHHHHHTTCCSCCTTTCSEEEEEECCC-------CC
T ss_pred hCCCeEEEEc-CCCCccccCHHHHHHHHHHCCCCEEEEcCccHHHHHHHHcCCCccCCCcccEEEEECCcCCcccccccc
Confidence 9999999995 89999999999999999999999999999999999999999999621 1233447776421 12
Q ss_pred HHHhhhCCCCeEEEEcCcccHHHHHHHHHHh-hCCC
Q 024996 224 RLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYS 258 (259)
Q Consensus 224 ~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~-~~~~ 258 (259)
.|+.+.+...|+|||++.+++.++++.|.+. ++++
T Consensus 169 ~~~~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~ 204 (280)
T 1s4d_A 169 NWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPD 204 (280)
T ss_dssp CHHHHHTTCSEEEEESCSTTHHHHHHHHHHTTCCTT
T ss_pred cHHHHhCCCCeEEEECchhhHHHHHHHHHhcCCCCC
Confidence 5778888899999999999999999999987 6643
No 7
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=100.00 E-value=3.6e-33 Score=254.51 Aligned_cols=175 Identities=19% Similarity=0.227 Sum_probs=148.3
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEec------CCCCHHHHHHHHHHHHhC
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQ 152 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~I~e~l~~ 152 (259)
.+|+||+||+|||||++||+||+++|++||+|++ +++.++++++.++.+.+.+.. ....++++.+.|++.+++
T Consensus 23 ~~g~l~lVG~GpGdp~lLTlrA~~~L~~ADvV~~-d~~~~~~il~~~~~~~~~i~~~k~~~~~~~~~~~i~~~l~~~~~~ 101 (294)
T 2ybo_A 23 PAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVY-DRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQ 101 (294)
T ss_dssp CTTCEEEEEEESSCGGGSCHHHHHHHTTCSEEEE-CTTSCHHHHHHSCTTSEEEECC--------CHHHHHHHHHHHHHT
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHHHcCCEEEE-cCCCCHHHHHhcccCCeEEecccccccccCCHHHHHHHHHHHHHC
Confidence 3589999999999999999999999999999999 567888899887766554432 223567778889999999
Q ss_pred CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------cceEEEEeecCCCcc---hHH
Q 024996 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARS---RTE 223 (259)
Q Consensus 153 G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl------~~~~~vg~lp~~~~~---~~~ 223 (259)
|++|++| ++|||++||++.++++.+.+.|+++++||||||+++|+|++|+|| +++.|+ +.|... +..
T Consensus 102 G~~Vv~L-~~GDP~i~g~g~~l~~~l~~~gi~vevIPGiSS~~aa~a~~Giplt~~~~~~~~~~~---sg~~~~~~~~~~ 177 (294)
T 2ybo_A 102 QRRVVRL-KGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFV---TGHLQNDGRLDL 177 (294)
T ss_dssp TCCEEEE-EEBCTTSSSSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCSCBTTTBSCEEEE---ECSCCTTSSCCC
T ss_pred CCeEEEE-cCCCCCccCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHcCCCcccCCCCcEEEEE---cccCCcccchhh
Confidence 9999999 699999999999999999999999999999999999999999999 567776 444321 123
Q ss_pred HHHhhhCCCCeEEEEcCcccHHHHHHHHHHh-hCCC
Q 024996 224 RLMLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYS 258 (259)
Q Consensus 224 ~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~-~~~~ 258 (259)
.|+.+.+...|+|||++.+++.++++.|.+. ++++
T Consensus 178 ~~~~l~~~~~tlVl~~~~~~~~~i~~~L~~~G~~~~ 213 (294)
T 2ybo_A 178 DWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASD 213 (294)
T ss_dssp CHHHHTSSSCEEEEESCGGGHHHHHHHHHHTTCCTT
T ss_pred HHHHHhcCCCeEEEECcHHHHHHHHHHHHhcCCCCC
Confidence 5788888899999999999999999999998 7643
No 8
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=100.00 E-value=3.6e-33 Score=245.64 Aligned_cols=166 Identities=28% Similarity=0.361 Sum_probs=134.8
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEec------CCCCHHHHHHHHHHHHhC
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQ 152 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~I~e~l~~ 152 (259)
|+|+||+||+|||||++||+||+++|++||+|++ +++.++++++.+ +++++.. ....+++..+.+.+.+++
T Consensus 1 M~g~l~vVG~GpG~~~~LT~~A~~~L~~advv~~-~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 77 (235)
T 1ve2_A 1 MRGKVYLVGAGFGGPEHLTLKALRVLEVAEVVLH-DRLVHPGVLALA--KGELVPVGKEGYGGKTPQEAITARLIALARE 77 (235)
T ss_dssp CCCEEEEEECBSSSGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTC--CSEEEEC-------CCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeeCCCCHHHHHHHHHHHHHhCCEEEE-eCCCCHHHHHhh--CcEEEEecccCcccccCHHHHHHHHHHHHHc
Confidence 6689999999999999999999999999999999 567788888765 4455432 223566778888999999
Q ss_pred CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------cceEEEEeecCCCcchHHHHH
Q 024996 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSRTERLM 226 (259)
Q Consensus 153 G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl------~~~~~vg~lp~~~~~~~~~L~ 226 (259)
|++|+++ ++|||++|+++.++++.+++.|+++++||||||+++|+|++|+|| +++.++ +.|. .. +
T Consensus 78 g~~V~~l-~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~~~~~---s~~~-~~-~--- 148 (235)
T 1ve2_A 78 GRVVARL-KGGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALSALGLPLTHRGLARSFAVA---TGHD-PA-L--- 148 (235)
T ss_dssp TCEEEEE-ESBCTTSSTTHHHHHHHHHHHTCCEEEECCCCTTHHHHHHTTCCSCBTTTBSCEEEE---ESSC-TT-S---
T ss_pred CCeEEEE-cCCCCCcccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHcCCCcccCCcccEEEEe---CCCC-ch-h---
Confidence 9999999 699999999999999999998999999999999999999999999 456665 5554 21 1
Q ss_pred hhhCCCCeEEEEcCcccHHHHHHHHHHhhCC
Q 024996 227 LSANEVKTQIFYVPPHKLLQFLEETSLLFGY 257 (259)
Q Consensus 227 ~l~~~~~TlVl~~~~~~l~~il~~L~e~~~~ 257 (259)
.+. ...|+|+|++++++.++++.|.+.|++
T Consensus 149 ~l~-~~~t~vl~~~~~~~~~i~~~L~~g~~~ 178 (235)
T 1ve2_A 149 PLP-RADTLVLLMPLHTLGGLKERLLERFPP 178 (235)
T ss_dssp CCC-BCSEEEEEC------CHHHHHHTTSCT
T ss_pred hhc-cCCeEEEEcChhhHHHHHHHHHhcCCC
Confidence 444 678999999999999999999986654
No 9
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=100.00 E-value=9.2e-33 Score=246.02 Aligned_cols=179 Identities=18% Similarity=0.173 Sum_probs=138.0
Q ss_pred CCCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCe
Q 024996 76 RGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (259)
Q Consensus 76 ~~~~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~ 155 (259)
+-.|.|-+|+||+|||||++||+||+++|++||+|++++++.. .+. ...+++++.....++.+..+.+++.+++|++
T Consensus 4 ~~~~~~~~~~vG~GPGd~~lLT~rA~~~L~~AdvI~g~d~~~~--~~~-~~~~~~~~~~~~~~ei~~~~~li~~~~~G~~ 80 (251)
T 3nut_A 4 HHHMSGWVTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVA--RIA-PREGLTLHPTDNRVELDRATHALEMAAEGRR 80 (251)
T ss_dssp ----CCEEEEEECBSSCGGGSCHHHHHHHHHCSEEEECGGGGT--TCC-CCTTCEEEECCSSCCHHHHHHHHHHHHTTCE
T ss_pred cccccccEEEEEECCCCHHHHHHHHHHHHHhCCEEEEcCcccc--ccc-ccCCCEEeecCCHHHHHHHHHHHHHHHCCCe
Confidence 4568999999999999999999999999999999999775431 121 1234455443333333344678888999999
Q ss_pred EEEEecCCCCCCCchHHHHHHHhhh----CCCCEEEEccchHHHHHHHhCCCCC-cceEEEEeecCC--CcchHHHHHhh
Q 024996 156 VALISDAGTPGISDPGTELAKLCVD----EKIPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPKH--ARSRTERLMLS 228 (259)
Q Consensus 156 Vv~Ls~~GDP~i~s~~~~Lv~~l~~----~gi~vevIPGISS~~aaaA~~Gipl-~~~~~vg~lp~~--~~~~~~~L~~l 228 (259)
||+|+ +|||++||++.++++.+.+ .|++++|||||||+++|+|++|+|| +++.++++.+.. +.+..+.++.+
T Consensus 81 Vv~L~-~GDP~i~g~g~~l~~~l~~~~~~~gi~veviPGiSS~~aa~a~~G~plt~~~~~~s~~~~~~~~~~~~~~l~~l 159 (251)
T 3nut_A 81 VVVVS-SGDPGVFAMASALFEALEAHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHA 159 (251)
T ss_dssp EEEEE-SBCTTSSSHHHHHHHHHHHCGGGTTCCEEEECCCCHHHHHHHHHEETTSSSEEEEESCCTTSCHHHHHHHHHHH
T ss_pred EEEEe-CCCcccccCHHHHHHHHHhhcccCCCcEEEECCHHHHHHHHHHhCCCccCCeEEEEecCCCCChHHHHHHHHHH
Confidence 99995 9999999999999999997 8999999999999999999999999 688888765432 11223456666
Q ss_pred hCCCCeEEEEcCc-----ccHHHHHHHHHHhhCCC
Q 024996 229 ANEVKTQIFYVPP-----HKLLQFLEETSLLFGYS 258 (259)
Q Consensus 229 ~~~~~TlVl~~~~-----~~l~~il~~L~e~~~~~ 258 (259)
.+.+.|+|||++. +++.++++.|.+.++.+
T Consensus 160 ~~~~~tlvl~~~~~~~~p~~i~~~~~ll~~g~~~~ 194 (251)
T 3nut_A 160 ARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPG 194 (251)
T ss_dssp HHTTCEEEEESCSCSSSTTHHHHHHHHHHHHSCTT
T ss_pred hCCCCEEEEECCccccchhHHHHHHHHHHhCCCCC
Confidence 7778899999974 36888888787777643
No 10
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3.7e-32 Score=237.83 Aligned_cols=170 Identities=20% Similarity=0.240 Sum_probs=136.7
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCC-----CHHHHhh-cCC---CCcEEe--cCCCC--------H
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQY-YNI---KTPLLS--YHKFN--------E 139 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~-----~~~ll~~-~~~---~~~~i~--~~~~~--------~ 139 (259)
|+|+||+||+|||||++||+||+++|++||+|++++++. +.++++. +.. +++++. +++.. .
T Consensus 1 M~g~l~iVG~GpG~~~~lT~~A~~~L~~advv~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (232)
T 2qbu_A 1 MHGKLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILDPVFPMTDDRDELESHW 80 (232)
T ss_dssp CCCCEEEEECBSSCGGGSBHHHHHHHHHCSEEECCBCTTCSSCHHHHHHHHHHHHCSSCCEEECCBCCSCSSSTTHHHHH
T ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhCCEEEEeCCCCCccchHHHHHHHHhccccCCcEEEEecCCCCccHHHHHHHH
Confidence 678999999999999999999999999999999986543 2334432 222 445442 22211 2
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc--ceEEEEeecCC
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD--EFTFVGFLPKH 217 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~--~~~~vg~lp~~ 217 (259)
++..+.|.+.+++|++|++++ .|||++||++.++++.+++.|+++++||||||+++|+|++|+|++ +..|. ++|.+
T Consensus 81 ~~~~~~i~~~~~~g~~V~~l~-~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a~~g~pl~~~~~~~~-~~~~~ 158 (232)
T 2qbu_A 81 DSAARMVAAELEDGRDVAFIT-LGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEILL-VVPRV 158 (232)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-SBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHHHTTCCCBCTTCCEE-EESSC
T ss_pred HHHHHHHHHHHHCCCeEEEEe-CCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHHHhCCCCCCCCceEE-EEeCC
Confidence 566778888899999999995 899999999999999999999999999999999999999999985 22232 34655
Q ss_pred CcchHHHHHhhhCCCCeEEEEcCcccHHHHHHHHHHh
Q 024996 218 ARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLL 254 (259)
Q Consensus 218 ~~~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~ 254 (259)
.. .|+..++.+.|+|||++++++.++++.|.+.
T Consensus 159 ~~----~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~~ 191 (232)
T 2qbu_A 159 DD----RFERVLRDVDACVIMKTSRHGRRAMEVVESD 191 (232)
T ss_dssp CH----HHHHHGGGCSEEEESSHHHHHHHHHHHHHHS
T ss_pred HH----HHHHHhhcCCeEEEEcccCcHHHHHHHHHhc
Confidence 32 6777777778999999999999999999885
No 11
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=99.98 E-value=6.5e-32 Score=240.99 Aligned_cols=170 Identities=18% Similarity=0.160 Sum_probs=135.4
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCC----CHHHHhh-c----CCCCcEEe----cCCCC------H
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH----SGKLLQY-Y----NIKTPLLS----YHKFN------E 139 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~----~~~ll~~-~----~~~~~~i~----~~~~~------~ 139 (259)
|+|+||+||+|||||++||+||+++|++||+|+|++++. +.++++. + ..+++++. +.... .
T Consensus 3 ~~g~l~iVG~GpG~~~~LT~~A~~~L~~advV~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
T 2e0n_A 3 NQGSIISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKLRGMLVPMSRSRGAAEASY 82 (259)
T ss_dssp --CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEEEEEECTTCCEECHHHHHHTTTTCCGGGEEEEEEECC---------C
T ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHHhCCEEEEeccccccccHHHHHHHHHHhcCCCCCEEEeeccCCccchhhhHHHH
Confidence 569999999999999999999999999999999985432 1124432 2 23444442 22111 1
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc----ceEEEEeec
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD----EFTFVGFLP 215 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~----~~~~vg~lp 215 (259)
++..+.|++.+++|++|++++ +|||++||++.++++.+.+.|+++++||||||+++|+|++|+||+ .|.+ +|
T Consensus 83 ~~~~~~i~~~~~~g~~Va~l~-~GDP~~~~~~~~l~~~l~~~gi~v~viPGiSs~~aa~a~~G~pl~~~~~~~~~---~~ 158 (259)
T 2e0n_A 83 AANYASMAEEVQAGRRVAVVS-VGDGGFYSTASAIIERARRDGLDCSMTPGIPAFIAAGSAAGMPLALQSDSVLV---LA 158 (259)
T ss_dssp GGGHHHHHHHHHTTCEEEEEE-SBCTTBSCTHHHHHHHHHTTTCCEEEECCCCHHHHHHHHTTCCSBCTTCCEEE---EC
T ss_pred HHHHHHHHHHHHCCCeEEEEe-CCCCcccccHHHHHHHHHHCCCCEEEeCChhHHHHHHHhcCCCCcCCCceEEE---Ec
Confidence 456788889999999999995 999999999999999999999999999999999999999999994 3444 46
Q ss_pred CCCcchHHHHHhhhCCCCeEEEEcCcccHHHHHHHHHHh
Q 024996 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLL 254 (259)
Q Consensus 216 ~~~~~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~ 254 (259)
.+.. .+.++..++...|+|||++++++.++++.|.+.
T Consensus 159 ~~~~--~~~l~~~~~~~~t~vl~~~~~~~~~i~~~L~~~ 195 (259)
T 2e0n_A 159 QIDE--IGELERALVTHSTVVVMKLSTVRDELVSFLERY 195 (259)
T ss_dssp SCSS--THHHHHHHTTCSEEEECCTTSSGGGHHHHHHHH
T ss_pred CCCC--HHHHHHHhhcCCEEEEEcccccHHHHHHHHHhC
Confidence 6543 356777777889999999999999999999876
No 12
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=99.97 E-value=1.6e-31 Score=256.75 Aligned_cols=175 Identities=19% Similarity=0.258 Sum_probs=148.0
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEec------CCCCHHHHHHHHHHHHhC
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSY------HKFNESQREQTVLNRLKQ 152 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~------~~~~~~~~~~~I~e~l~~ 152 (259)
.+|+||+||+|||||++||+||+++|++||+|+| ++++++++++.++.+++.+.. +...++++.+.+++.+++
T Consensus 214 ~~g~l~lVG~GpGd~~lLTlrA~~~L~~ADvV~~-d~~~~~~il~~~~~~~~~~~~~k~~~~~~~~~~~i~~~l~~~~~~ 292 (457)
T 1pjq_A 214 HRGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVY-DRLVSDDIMNLVRRDADRVFVGKRAGYHCVPQEEINQILLREAQK 292 (457)
T ss_dssp CCCEEEEEECBSSCGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTSCTTSEEEECSCC---CCCTTHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCChHHccHHHHHHHHhCCEEEE-eCCCCHHHHhhcccCCEEEeccccccccCCCHHHHHHHHHHHHHC
Confidence 4589999999999999999999999999999999 577888899887776665542 223467788889999999
Q ss_pred CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc------ceEEEEeecCCCcch-HHHH
Q 024996 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD------EFTFVGFLPKHARSR-TERL 225 (259)
Q Consensus 153 G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~------~~~~vg~lp~~~~~~-~~~L 225 (259)
|++|++| ++|||++||++.++++.+++.|+++++||||||+++|+|++|+||+ ++.|+ +.|.... ...|
T Consensus 293 G~~Vv~L-~~GDP~i~g~g~~l~~~l~~~gi~v~vvPGiSs~~aa~a~~Giplt~~~~~~~~~~v---sg~~~~~~~~~~ 368 (457)
T 1pjq_A 293 GKRVVRL-KGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLV---TGHLKTGGELDW 368 (457)
T ss_dssp TCEEEEE-ESBCTTTSSSHHHHHTTTTTTTCCEEEECCCCHHHHHHHHTTCCSCCTTTCSEEEEE---CC------CCCH
T ss_pred CCcEEEE-eCCCCCccCCHHHHHHHHHHCCCCEEEeCCHhHHHHHHHHcCCCccCCCccceEEEE---eCCCCCcchhhH
Confidence 9999999 7999999999999999999999999999999999999999999995 45554 6665421 1237
Q ss_pred HhhhCCCCeEEEEcCcccHHHHHHHHHHh-hCCC
Q 024996 226 MLSANEVKTQIFYVPPHKLLQFLEETSLL-FGYS 258 (259)
Q Consensus 226 ~~l~~~~~TlVl~~~~~~l~~il~~L~e~-~~~~ 258 (259)
+.+.+...|+||||+.+++.++++.|.++ ++++
T Consensus 369 ~~l~~~~~t~Vl~~~~~~~~~i~~~L~~~g~~~~ 402 (457)
T 1pjq_A 369 ENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQAD 402 (457)
T ss_dssp HHHHSSSEEEEESSCSSSHHHHHHHHHHTTCCTT
T ss_pred HHHhcCCCeEEEEcchhhHHHHHHHHHhcCCCCC
Confidence 88888899999999999999999999998 7643
No 13
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=99.97 E-value=1.2e-31 Score=236.56 Aligned_cols=166 Identities=22% Similarity=0.252 Sum_probs=138.4
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecC-----CCCHHHHHHHHHHHHhCCCe
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYH-----KFNESQREQTVLNRLKQGEI 155 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~-----~~~~~~~~~~I~e~l~~G~~ 155 (259)
|+||+||+|||||++||+||+++|++||+|++ +++.++++++.+. ++.+... ..++++..+.+.+.+++|++
T Consensus 1 G~l~iVG~GpG~~~~LT~~A~~~L~~advI~~-~~~~~~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~g~~ 77 (239)
T 1va0_A 1 GRVYLVGAGPGDPELLTLKAYRLLKEAPVVLY-DRLVDERVLALAP--GEKVYVGKEEGESEKQEEIHRLLLRHARAHPF 77 (239)
T ss_dssp CEEEEEECBSSCGGGSBHHHHHHHHHCSEEEE-CTTSCHHHHTTCC--SEEEECCCCC----CHHHHHHHHHHHHHTSSE
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCEEEE-cCCCCHHHHhhcc--ccEEecccccccccCHHHHHHHHHHHHHCCCc
Confidence 68999999999999999999999999999999 5677888888665 4444332 33556778888899999999
Q ss_pred EEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCC------cceEEEEeecCCCcch-HHHHHhh
Q 024996 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT------DEFTFVGFLPKHARSR-TERLMLS 228 (259)
Q Consensus 156 Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl------~~~~~vg~lp~~~~~~-~~~L~~l 228 (259)
|+++ ++|||++|+++.++++.+++.|+++++||||||+++| |+|| +++.|+ +.|.+.. ...++.+
T Consensus 78 V~~l-~~GDP~i~~~~~~l~~~l~~~gi~v~viPGiSs~~aa----g~pl~~~~~~~~~~~~---~~~~~~~~~~~~~~l 149 (239)
T 1va0_A 78 VVRL-KGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLAS----GLPLTHRGLAHGFAAV---SGVLEGGGYPDLRPF 149 (239)
T ss_dssp EEEE-ESBCTTSSSSHHHHHHHHHHTTCCEEEECCCCGGGTT----CCCSSBTTTBSEEEEE---ESSCGGGCCCCCTTT
T ss_pred EEEE-eCCCCccccCHHHHHHHHHHCCCcEEEECCcchHhhc----CCCcccCCccceEEEE---eccCCccchhhHHHh
Confidence 9999 6999999999999999999999999999999999998 9999 456666 4454311 1246666
Q ss_pred hCCCCeEEEEcCcccHHHHHHHHHHh-hCCC
Q 024996 229 ANEVKTQIFYVPPHKLLQFLEETSLL-FGYS 258 (259)
Q Consensus 229 ~~~~~TlVl~~~~~~l~~il~~L~e~-~~~~ 258 (259)
.+. .|+|+|++++++.++++.|.+. |+++
T Consensus 150 ~~~-~t~vl~~~~~~~~~i~~~L~~~g~~~~ 179 (239)
T 1va0_A 150 ARV-PTLVVLMGVGRRVWIAKELLRLGRDPR 179 (239)
T ss_dssp TTC-SSEEEESCSTTHHHHHHHHHHTTCCTT
T ss_pred cCC-CcEEEEccHHHHHHHHHHHHhcCCCCC
Confidence 677 9999999999999999999997 7643
No 14
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase, transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Probab=99.97 E-value=1.6e-31 Score=242.16 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=125.9
Q ss_pred CCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCC--------HHHHhhcCCC--CcEEecCC--CC------
Q 024996 77 GPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYNIK--TPLLSYHK--FN------ 138 (259)
Q Consensus 77 ~~~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~--------~~ll~~~~~~--~~~i~~~~--~~------ 138 (259)
..|+|+||+||+||||||+||+||+++|++||+|++++++.. .++++.+... ++++.+.. ..
T Consensus 18 ~~m~g~ly~VG~GPGdpellTlrA~~~L~~aDvI~~~~t~~~~~~l~~~a~~il~~~~~~~~~~~i~~~~pm~~~~~~~Y 97 (275)
T 3nd1_A 18 GSHMIELSLIGIGTGNPRHITGQAVDAMNAADLILIPLKGADKSDLAGLRRQICAAHLTNPATKVIDFALPVRDASNPSY 97 (275)
T ss_dssp --CCEEEEEEECBSSCGGGCBHHHHHHHHHCSEEEEECCCSCGGGCHHHHHHHHHHHCCCTTCEEEEECCCCC-------
T ss_pred CCCCcEEEEEEeCCCCHHHHHHHHHHHHHhCCEEEecCCcccchhhhhhHHHHHHHhhcccCcEEEEecCCccccccchh
Confidence 468899999999999999999999999999999999876543 5777765332 56655432 11
Q ss_pred -----------HHHHHHHHHHHHhC-CCeEEEEecCCCCCCCchHHHHHHHhhh-CCCCEEEEccchHHHHHHHhCCCCC
Q 024996 139 -----------ESQREQTVLNRLKQ-GEIVALISDAGTPGISDPGTELAKLCVD-EKIPVVPIPGASAFVAALSASGLAT 205 (259)
Q Consensus 139 -----------~~~~~~~I~e~l~~-G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~-~gi~vevIPGISS~~aaaA~~Gipl 205 (259)
++.+.+.|++.+++ |++|++++ +|||++||++.++++.+.+ .|+++++||||||+++++|++|+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Va~l~-~GDP~i~~~~~~l~~~l~~~~gi~veviPGiSs~~aa~a~~g~pl 176 (275)
T 3nd1_A 98 RKGVDDWHDAIAETWLSEITAHVPGLEGRVALLV-WGDPSLYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAIPL 176 (275)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCTTSCEEEEEEE-SBCTTSSCSHHHHHHTTTTTSSEEEEEECCCCHHHHHHHHHTCCS
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhCCCeEEEEe-CCCCcccchHHHHHHHHHHhcCCCEEEecCccHHHHHHHHcCCCC
Confidence 11234557788899 99999995 9999999999999999998 7999999999999999999999999
Q ss_pred cce-EEEEeecCCCcchHHHHHhhhCCCC-eEEEEcCcccHHHH
Q 024996 206 DEF-TFVGFLPKHARSRTERLMLSANEVK-TQIFYVPPHKLLQF 247 (259)
Q Consensus 206 ~~~-~~vg~lp~~~~~~~~~L~~l~~~~~-TlVl~~~~~~l~~i 247 (259)
+++ .+++++|.+.. +.+ .+....+ ++|+|++.+++.++
T Consensus 177 ~~~~~~~~~l~g~~~---~~~-~~~~~~~~~vvl~~~~~~l~~i 216 (275)
T 3nd1_A 177 NDIGAPVVITTGRQL---RDH-GWPAGTETVVAMLDGECSFQSL 216 (275)
T ss_dssp SCTTCCEEEEEHHHH---HHH-CSCTTCSEEEEESCSSCGGGGS
T ss_pred ccCCcEEEEEcCCCc---chH-HHHhCCCCEEEEECCcccHHHH
Confidence 976 34556664321 112 3334444 55667776666543
No 15
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SAH; 2.00A {Thermus thermophilus} PDB: 2zvc_A*
Probab=99.97 E-value=1.6e-30 Score=237.59 Aligned_cols=176 Identities=24% Similarity=0.244 Sum_probs=139.4
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhc--CCCCcEEecCCCCHHHHHHHHHHHHhCCCeEE
Q 024996 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYY--NIKTPLLSYHKFNESQREQTVLNRLKQGEIVA 157 (259)
Q Consensus 80 ~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~--~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv 157 (259)
||+||+||+|||||++||+||+++|++||+|++++++ .+++..+ ..+++++.+++..+.+..+++++.+++|++|+
T Consensus 1 MG~l~lVG~GpGdp~lLT~rA~~~L~~ADvVig~~~~--l~ll~~~~~~~~k~~~~~~~~~e~~~~~~~l~~a~~G~~Va 78 (295)
T 2zvb_A 1 MGELFLVGMGPGDLPGLTQRAREALEGAEVVIGYSTY--VKLLEEMGLLAGKEVVRKGMTEELDRAEEALERALSGQRVA 78 (295)
T ss_dssp -CEEEEEECBTSSGGGSCHHHHHHHHHCSEEECCHHH--HHHHHHHTCCTTSEEECTTCCSHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEECCCCChHHHHHHHHHHHHcCCEEEEeCcH--HHHHHHhhccCCCEEEecCCchHHHHHHHHHHHHHCCCcEE
Confidence 3899999999999999999999999999999986643 3555554 23566666666566567788888889999999
Q ss_pred EEecCCCCCCCchHHHHHHHhhhCC--------------------CCEEEEccchHHHHHHHhCCCCC-cceEEEEeecC
Q 024996 158 LISDAGTPGISDPGTELAKLCVDEK--------------------IPVVPIPGASAFVAALSASGLAT-DEFTFVGFLPK 216 (259)
Q Consensus 158 ~Ls~~GDP~i~s~~~~Lv~~l~~~g--------------------i~vevIPGISS~~aaaA~~Gipl-~~~~~vg~lp~ 216 (259)
+|+ +|||++|+.+.++.+.+++.+ ++++|||||||+++++|++|+|| ++|.++++...
T Consensus 79 ~L~-~GDP~~yg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~veVIPGiSS~~aaaA~lG~plt~~~~~is~~~~ 157 (295)
T 2zvb_A 79 LVS-GGDPGIYGMAAPVLELMEERGLKRVDGGVGLPGRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHDTCLISLSDL 157 (295)
T ss_dssp EEE-SBCTTSSSSHHHHHHHHHHTTCEECSCCCSSSEEEEETTEEEEEEEECCCCHHHHHHHTTEETTSSCEEEEECCCT
T ss_pred EEe-CCCCChhhhHHHHHHHHHHhcccccccccccccccccccCCCcEEEECCHhHHHHHHHHhCCCccCCCeEEeCCCC
Confidence 995 999999999999999888754 99999999999999999999999 58888743110
Q ss_pred --CCcchHHHHHhhhCCCCeEEEEcCc-----ccHHHHHHHHHHhhCCC
Q 024996 217 --HARSRTERLMLSANEVKTQIFYVPP-----HKLLQFLEETSLLFGYS 258 (259)
Q Consensus 217 --~~~~~~~~L~~l~~~~~TlVl~~~~-----~~l~~il~~L~e~~~~~ 258 (259)
++....+.++.+.+...|+|+|++. +++.++++.|.+.++.+
T Consensus 158 ~~~~~~l~~~l~~~~~~~~t~vl~~~~~~~r~~~~~~i~~~L~~~~~~~ 206 (295)
T 2zvb_A 158 LTPWPLIERRLHAAGQGDFVVVLYNPQSKRRDWQLRKSAEILLEYRPKE 206 (295)
T ss_dssp TSCHHHHHHHHHHHHHTTCEEEEESCCCSSCTTHHHHHHHHHTTTSCTT
T ss_pred CCCHHHHHHHHHHhhcCCcEEEEEcCCcccchhhHHHHHHHHHhcCCCC
Confidence 1111234556666678899999963 37999999999887543
No 16
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE; 1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.96 E-value=1.7e-29 Score=226.89 Aligned_cols=178 Identities=15% Similarity=0.163 Sum_probs=125.1
Q ss_pred CCCCCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCC-----CHHHHhhcCCCCcEEecCCCCHHHHHHHHHHH
Q 024996 75 KRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH-----SGKLLQYYNIKTPLLSYHKFNESQREQTVLNR 149 (259)
Q Consensus 75 ~~~~~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~-----~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~ 149 (259)
-++..+|+||+||+|||||++||+||+++|++||+|++++ +. ..+.++.+. .++.........+++.+.+++.
T Consensus 7 ~~~~~~g~l~vVG~GpGd~~lLTlrA~~~L~~ADvI~~~~-~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~ 84 (268)
T 1vhv_A 7 HHGGHMSLLTFVGLGLWDVKDISVKGLEAVREADEVYVEY-YTSKLLSSIEEMEEFF-GKRVVELERSDLEENSFRLIER 84 (268)
T ss_dssp ------CEEEEEECBSSSGGGSBHHHHHHHHHCSEEEEEC-SSCCCSSCHHHHHHHH-TSCCEEECHHHHTTTHHHHHHH
T ss_pred cCCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCEEEECC-chHhhhccHHHHHHHh-CCCccccchhHHHHHHHHHHHH
Confidence 3456679999999999999999999999999999999975 33 123333221 1221111111123456777887
Q ss_pred HhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeec--CCCcchHHHHHh
Q 024996 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLP--KHARSRTERLML 227 (259)
Q Consensus 150 l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp--~~~~~~~~~L~~ 227 (259)
+++ ++||+++ +|||++||++.++++++++.|++++|||||||+++|+|++|+||+++.+...++ .+........+.
T Consensus 85 a~~-~~Va~L~-~GDP~iy~~~~~l~~~~~~~gi~vevIPGiSs~~aa~a~~G~pl~~~~~~~sv~~~~~~~~~~~~~~~ 162 (268)
T 1vhv_A 85 AKS-KSVVLLV-PGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSWHRSQTPVNVIKAN 162 (268)
T ss_dssp HTT-SEEEEEE-SBCTTSSSHHHHHHHHHHHTTCCEEEECCCCHHHHHHHHHCCCGGGBCCCEEECSSCCSHHHHHHHHH
T ss_pred hCC-CCEEEEe-CCCCcccCcHHHHHHHHHHCCCcEEEECCccHHHHHHHHcCCCcccCcceEEEEecCCCchHHHHHHH
Confidence 765 8999995 999999999999999999999999999999999999999999999853332121 111111222345
Q ss_pred hhCCCCeEEE------EcCcccHHHHHHHHHHhhC
Q 024996 228 SANEVKTQIF------YVPPHKLLQFLEETSLLFG 256 (259)
Q Consensus 228 l~~~~~TlVl------~~~~~~l~~il~~L~e~~~ 256 (259)
+.....|+|+ ||.++++.+.+.++.+.++
T Consensus 163 l~~~~~tlvl~d~~~~~~~~~~~~~~L~~l~~~~~ 197 (268)
T 1vhv_A 163 RSIDAHTLLFLDLHPEPMTIGHAVENLIAEDAQMK 197 (268)
T ss_dssp HHTTCBEEEEECCSSSCCCHHHHHHHHHHHCGGGG
T ss_pred hccCCCeEEEEcCchhhcCHHHHHHHHHHHHhcCC
Confidence 6667889999 7888877777766655665
No 17
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=99.96 E-value=2.7e-29 Score=224.70 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=122.7
Q ss_pred eEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCC---C--CHHHHhhcCCCCcEEecCCCCHHHHHHHHH-HHHhCCCe
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKSANVILSEDTR---H--SGKLLQYYNIKTPLLSYHKFNESQREQTVL-NRLKQGEI 155 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~---~--~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~-e~l~~G~~ 155 (259)
+||+||+|||||++||+||+++|++||+|++++.. . +.++++.+. +++++..+....++..+.|+ +.++ |++
T Consensus 2 ~l~iVG~GpG~~~~LT~~A~~~L~~advv~~~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~-g~~ 79 (265)
T 2z6r_A 2 VLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQRLI-GKEIRVLSREDVELNFENIVLPLAK-END 79 (265)
T ss_dssp CEEEEECBSSSGGGSBHHHHHHHHHCSEEEEECSSCCCTTCCHHHHHHHH-TSCCEEECHHHHHHHHHHHTHHHHT-TSC
T ss_pred EEEEEccCCCChHhcCHHHHHHHHhCCEEEEeccccccccCCHHHHHhcc-CCcEEEcCcccHHHHHHHHHHHHhC-CCc
Confidence 59999999999999999999999999999987532 1 566777652 45555443233456667777 7776 789
Q ss_pred EEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcce---EEEEeecCCCcc--hHHHHHhhhC
Q 024996 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARS--RTERLMLSAN 230 (259)
Q Consensus 156 Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~---~~vg~lp~~~~~--~~~~L~~l~~ 230 (259)
|++++ +|||++|+++.++++.+.+.|++++|||||||+++| |++|+||+++ ..+.+.+.|+.. ..+.+...++
T Consensus 80 V~~l~-~GDP~i~~~~~~l~~~l~~~gi~veviPGiSs~~aa-a~~g~pl~~~~~~~~v~~~s~~~~~~~~~~~l~~~~~ 157 (265)
T 2z6r_A 80 VAFLT-PGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAV-GITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAE 157 (265)
T ss_dssp EEEEE-SBCTTSSSSTHHHHHHHHHTTCCEEEECCCCHHHHG-GGGTCCGGGBCCCEEECCCBTTBCCCHHHHHHHHHHH
T ss_pred EEEEE-CCCCcCCCCHHHHHHHHHHCCCcEEEECChhHHHHH-HHhCCCccCCCccEEEEEecCCcCCCchHHHHHHHHh
Confidence 99995 999999999999999999999999999999999999 9999999864 122223455432 1245666666
Q ss_pred CC-CeEEE---------EcCcc
Q 024996 231 EV-KTQIF---------YVPPH 242 (259)
Q Consensus 231 ~~-~TlVl---------~~~~~ 242 (259)
.+ .|+|+ ||+++
T Consensus 158 ~~~~tlvl~d~~~~~~~y~~~~ 179 (265)
T 2z6r_A 158 RGLHTLLFLDIKAEKRMYMTAN 179 (265)
T ss_dssp TTCBEEEEECEEGGGTEECCHH
T ss_pred CCCceEEEEecccccccccCHH
Confidence 55 99999 88877
No 18
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD, struc genomics, SAM, S-adenosylmethionine, MCSG; HET: MSE SAM; 1.60A {Corynebacterium diphtheriae}
Probab=99.96 E-value=2.1e-29 Score=223.96 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=117.8
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCC--------HHHHhhcCCCCcEEecCC--CC-----------
Q 024996 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHS--------GKLLQYYNIKTPLLSYHK--FN----------- 138 (259)
Q Consensus 80 ~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~--------~~ll~~~~~~~~~i~~~~--~~----------- 138 (259)
+|+||+||+|||||++||+||+++|++||+|++++++.. .++++.+..+++++.++. .+
T Consensus 2 mg~l~vVG~GpGd~~lLTl~A~~~L~~Advv~~~~~~~~~~~l~~~~~~il~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 81 (251)
T 2npn_A 2 MRTIYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVDTHAPGTPIYAVTDPERDRNPDNYEEEVR 81 (251)
T ss_dssp CEEEEEEECBSSCGGGCCHHHHHHHHHCSEEEEEC---CCHHHHHHHHHHHHHHSTTCCEEEECC----------CHHHH
T ss_pred CcEEEEEEeCCCChhHhhHHHHHHHHhCCEEEEeCCCCCchhhhhhHHHHHHHHhCCCEEEEecCCCcccchhhhhhhhh
Confidence 379999999999999999999999999999999865443 345655533556655432 00
Q ss_pred -----HHHHH-HHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCC---CCEEEEccchHHHHHHHhCCCCCcceE
Q 024996 139 -----ESQRE-QTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEK---IPVVPIPGASAFVAALSASGLATDEFT 209 (259)
Q Consensus 139 -----~~~~~-~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~g---i~vevIPGISS~~aaaA~~Gipl~~~~ 209 (259)
.++.. +.|.+.+++|++||+|+ +|||++||++.++++.+.+.| ++++|||||||+++|+|++|+||+++.
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~g~~Vv~l~-~GDP~iy~~~~~l~~~l~~~g~~~i~veviPGiSs~~aa~a~~g~pl~~~~ 160 (251)
T 2npn_A 82 RWHAERAHLLASTIRERTPDDGAVAFLV-WGDPSLYDSTLRIIEHMRNLEDLHADVKVIPGITAVQVLTAEHGILINRIG 160 (251)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEE-SBCTTSSCCHHHHHHHHHHHHTCCEEEEEECCCCHHHHHHHHHTCCSSCTT
T ss_pred hhhhhHHHHHHHHHHHHHHCCCeEEEEe-CCCcccccCHHHHHHHHHhcCCCCCcEEEeCChhHHHHHHHHcCCCcCCCC
Confidence 11122 35667777899999995 999999999999999999877 999999999999999999999999742
Q ss_pred -EEEeecCCCcchHHHHH-hhhCCCCeEEEEcCccc-HHH
Q 024996 210 -FVGFLPKHARSRTERLM-LSANEVKTQIFYVPPHK-LLQ 246 (259)
Q Consensus 210 -~vg~lp~~~~~~~~~L~-~l~~~~~TlVl~~~~~~-l~~ 246 (259)
.+.+++.+. ++ .+.....|+|+|+.+++ +.+
T Consensus 161 ~~~~~~~g~~------l~~~l~~~~~t~vvl~~~~~~~~~ 194 (251)
T 2npn_A 161 EAIHITTGRN------LPETSAKDRRNCVVMLDGKTAWQD 194 (251)
T ss_dssp CCCEEEETTT------GGGSCTTGGGEEEEESCSSCTHHH
T ss_pred CeEEEEccch------hhHHHHhcCCcEEEEEcchhhHHH
Confidence 222345432 22 23345678888776665 444
No 19
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic parasitic protozoan, structural genomics, decode, UW, SBRI; 2.49A {Entamoeba histolytica}
Probab=99.96 E-value=2.1e-29 Score=230.01 Aligned_cols=154 Identities=22% Similarity=0.261 Sum_probs=121.0
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCC----CCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCe
Q 024996 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTR----HSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEI 155 (259)
Q Consensus 80 ~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~----~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~ 155 (259)
.|+||+||+||||+++||+||+++|++||+|++++.+ .+.++++.+ .+++++..+..++++..+.+++.+++ ++
T Consensus 20 ~~~l~lVG~GpGd~~~LT~rA~~~L~~ADvV~~e~~~s~~~~~~~~L~~~-~~~~~i~~~~~~~~~~~~~i~~~a~~-~~ 97 (292)
T 3i4t_A 20 GSMLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCDVAKLEEF-YGKKVIIGDRDLVETEADQILEPAKT-KN 97 (292)
T ss_dssp CCEEEEEECBSSSGGGSCHHHHHHHHHCSEEEECGGGGGSSSCHHHHHHH-HTSCCEEC-------CCCTTHHHHTT-SE
T ss_pred CCEEEEEEECCCChHHhhHHHHHHHHhCCEEEEecccccccCCHHHHHhC-CCCeEEEcccccHHHHHHHHHHHhcC-CC
Confidence 4789999999999999999999999999999996543 567788766 45666655544555556678888887 89
Q ss_pred EEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcce---EEEEeecCCCcc---hHHHHHhhh
Q 024996 156 VALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEF---TFVGFLPKHARS---RTERLMLSA 229 (259)
Q Consensus 156 Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~---~~vg~lp~~~~~---~~~~L~~l~ 229 (259)
|++++ +|||++|+++.++++.+++.|+++++||||||+++ +|++|+||+.+ .-+.+++.|+.. ....|+.+.
T Consensus 98 Vv~L~-~GDP~i~g~g~~l~~~l~~~gi~veviPGiSs~~A-~a~~G~pl~~~~~~~sv~~~t~~~~p~~~~~~~~~~l~ 175 (292)
T 3i4t_A 98 VALLV-VGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMNA-IGCSGLQLYRFGQTVSVCFWSEHWRPSSYYPKIKINRD 175 (292)
T ss_dssp EEEEE-SBCHHHHCTTHHHHHHHHHHTCCEEEECCCCHHHH-GGGGSCCGGGBCCCEEECCCBTTBCCCTHHHHHHHHHH
T ss_pred EEEEe-cCCCCccccHHHHHHHHHHCCCcEEEECCHHHHHH-HHHhCCCcccCCceeEEEEEeCCCCCCccHHHHHHHhh
Confidence 99995 99999999999999999999999999999999984 69999999955 112234555542 234578888
Q ss_pred CCCCeEEE
Q 024996 230 NEVKTQIF 237 (259)
Q Consensus 230 ~~~~TlVl 237 (259)
+...|+||
T Consensus 176 ~~~~Tlvl 183 (292)
T 3i4t_A 176 NNMHTLVL 183 (292)
T ss_dssp TTCBEEEE
T ss_pred cCCCeEEE
Confidence 88999999
No 20
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=99.95 E-value=4.5e-28 Score=220.56 Aligned_cols=168 Identities=20% Similarity=0.182 Sum_probs=126.5
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCC---CH---HHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCC
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH---SG---KLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGE 154 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~---~~---~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~ 154 (259)
++||+||+| ||+++||+||+++|++||+|++++... +. .+++.+.. ++++..+....++..+.|++.++ |+
T Consensus 8 ~~l~lVG~G-Gd~~lLTl~A~~~L~~ADvV~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~i~~~~~-g~ 84 (294)
T 1wde_A 8 VTLLLVGWG-YAPGMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGE-ARVVEASRRDLEERSREIVSRAL-DA 84 (294)
T ss_dssp CEEEEEECB-SSTTCCCHHHHHHHHHCSEEEEECSSSTTCHHHHHHHHHHHTS-SSEEECCHHHHHTSHHHHTCCSS-CC
T ss_pred eEEEEEECC-CChHHhhHHHHHHHHhCCEEEEecccccccccchHHHHHhccC-CeEEecChHHHHHHHHHHHHHhC-CC
Confidence 379999999 999999999999999999999975431 21 24444443 55554432233445566777666 99
Q ss_pred eEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceE--E-EEeecCCCcc--hHHHHHh-h
Q 024996 155 IVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFT--F-VGFLPKHARS--RTERLML-S 228 (259)
Q Consensus 155 ~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~--~-vg~lp~~~~~--~~~~L~~-l 228 (259)
+||+|+ +|||++|+++.++++.+++.|++++|||||||+++|+|++|+||+++. + +.+...+... ..+.+.. +
T Consensus 85 ~Vv~L~-~GDP~v~g~~~~l~~~l~~~gi~veviPGiSs~~aa~a~~Gipl~~~~~~~~v~~~~~~~~p~~~~~~l~~~l 163 (294)
T 1wde_A 85 VVAVVT-AGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNL 163 (294)
T ss_dssp EEEEEE-SBCTTSSSSHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHTCCGGGEEEEEEECCGGGCCCCHHHHHHHHHHH
T ss_pred CEEEEe-CCCCccccCHHHHHHHHHHCCCCEEEECCHhHHHHHHHHhCCCccCCCceEEEEeccCcccCCChHHHHHHHH
Confidence 999995 999999999999999999999999999999999999999999999752 1 1122211111 1234444 4
Q ss_pred hCCCCeEEEEcCccc-----HHHHHHHHH
Q 024996 229 ANEVKTQIFYVPPHK-----LLQFLEETS 252 (259)
Q Consensus 229 ~~~~~TlVl~~~~~~-----l~~il~~L~ 252 (259)
.....|+|||+..++ +.++.+.|.
T Consensus 164 ~~~~~tlvl~~~~~~~~~m~~~~i~~~L~ 192 (294)
T 1wde_A 164 CAGLHTTALLDVDERGVQLSPGQGVSLLL 192 (294)
T ss_dssp HHTCEEEEEECBCTTSCBCCHHHHHHHHH
T ss_pred hcCCCeEEEEecccccccccHHHHHHHHH
Confidence 445689999999888 888888887
No 21
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=99.95 E-value=1.5e-27 Score=189.81 Aligned_cols=114 Identities=47% Similarity=0.798 Sum_probs=101.0
Q ss_pred CCCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCC-CcEEecCCCCHHHHHHHHHHHHhCCCeE
Q 024996 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK-TPLLSYHKFNESQREQTVLNRLKQGEIV 156 (259)
Q Consensus 78 ~~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~-~~~i~~~~~~~~~~~~~I~e~l~~G~~V 156 (259)
.++|+||+||+||||+++||+||+++|++||+|++++++.++++++.++.. ++++.+++.++++..+.+++.+++|++|
T Consensus 3 ~~~g~ly~VG~GpGd~~~lT~~a~~~L~~advv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~V 82 (117)
T 3hh1_A 3 AHKGTLYVVATPLGNLDDMTFRAVNTLRNAGAIACEDTRRTSILLKHFGIEGKRLVSYHSFNEERAVRQVIELLEEGSDV 82 (117)
T ss_dssp CCCCCEEEEEECSSCGGGSCHHHHHHHHHCSEEEESCHHHHHHHHHHTTCCSCCEEECCSTTHHHHHHHHHHHHHTTCCE
T ss_pred CCCceEEEEeCCCCCHHHhhHHHHHHHHhCCEEEEecCchHHHHHHHhCCCCCEEeccCCccHHHHHHHHHHHHHCCCeE
Confidence 467999999999999999999999999999999998766666788877554 7777888778888889999999999999
Q ss_pred EEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccc
Q 024996 157 ALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (259)
Q Consensus 157 v~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGI 191 (259)
++++++|||++|+++.++++++++.|+++++|||+
T Consensus 83 ~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPGp 117 (117)
T 3hh1_A 83 ALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPGA 117 (117)
T ss_dssp EEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC--
T ss_pred EEEecCCcCeEeccHHHHHHHHHHCCCcEEEeCCC
Confidence 99965899999999999999999999999999995
No 22
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta, alpha-beta-alpha sandwich, structural genomics, PSI, P structure initiative; HET: SAH; 2.27A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Probab=99.93 E-value=5.6e-26 Score=198.91 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=106.7
Q ss_pred CCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEE
Q 024996 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALI 159 (259)
Q Consensus 80 ~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~L 159 (259)
.|+||+||+||| |++||+||+++|++||+|++. ++. .+++..+. ..+...+.... ++..++|. .+++|++|+++
T Consensus 21 ~g~l~lVG~GpG-p~lLTlrA~~~L~~AdvI~~~-~~~-l~~~~~~~-~~~~~~~~~~~-~~~~~~i~-~~~~g~~Vv~L 94 (221)
T 2bb3_A 21 GHMIWIVGSGTC-RGQTTERAKEIIERAEVIYGS-RRA-LELAGVVD-DSRARILRSFK-GDEIRRIM-EEGREREVAVI 94 (221)
T ss_dssp CSEEEEEECBSS-TTCCCHHHHHHHHHCSEEEEC-HHH-HHHTTCTT-CTTEEECSCCS-HHHHHHHH-HHHHHSCEEEE
T ss_pred CCEEEEEEeCCC-hhHhHHHHHHHHHhCCEEEEC-HHH-HHHhhhhc-CCceEeccchH-HHHHHHHH-HhcCCCcEEEE
Confidence 478999999999 999999999999999999994 332 23333221 12222233222 34555665 46678999999
Q ss_pred ecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhhhCCCCeEEEEc
Q 024996 160 SDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYV 239 (259)
Q Consensus 160 s~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~TlVl~~ 239 (259)
+ .|||++|+.+..+.+ +. .++++++||||||+++|+|++|+||+++.+++ .|++...+.++.+.+...++++|.
T Consensus 95 ~-~GDP~i~~~~~~l~~-~~-~~i~veviPGiSS~~aa~a~~g~pl~~~~~vs---~~~r~~~~~l~~l~~~~~~vvl~~ 168 (221)
T 2bb3_A 95 S-TGDPMVAGLGRVLRE-IA-EDVEIKIEPAISSVQVALARLKVDLSEVAVVD---CHAKDFDAELTELLKYRHLLILAD 168 (221)
T ss_dssp E-SBCTTTTTSHHHHHT-SC-CSSEEEEECCCCHHHHHHHHHTCCGGGEEEEE---C----CCHHHHTHHHHCEEEEEEC
T ss_pred e-CCCCccccCHHHHHH-hc-CCCCEEEECCHHHHHHHHHHhCCCceeEEEEe---ecCCCchHHHHHHhcCCeEEEEEC
Confidence 5 899999997776544 43 48999999999999999999999999988874 343222245666665554555554
Q ss_pred CcccH
Q 024996 240 PPHKL 244 (259)
Q Consensus 240 ~~~~l 244 (259)
..++.
T Consensus 169 ~~~~~ 173 (221)
T 2bb3_A 169 SHFPL 173 (221)
T ss_dssp TTCCC
T ss_pred CCCCH
Confidence 44444
No 23
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=99.29 E-value=8e-12 Score=98.90 Aligned_cols=69 Identities=42% Similarity=0.713 Sum_probs=63.2
Q ss_pred ccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhhhCCCCeEEEEcCcccHHHHHHHHHHhhCCC
Q 024996 189 PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYS 258 (259)
Q Consensus 189 PGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~~~~~ 258 (259)
||+||+.+|++.+|+|.+.|.|+||+|.+. .+.+.|+.+.+.+.|+|||+++||+.++++.|.+++++|
T Consensus 1 PG~sA~~~Al~~sGlp~~~F~F~Gflp~~~-~r~~~l~~la~~~~TlVfyesp~Rl~~~l~~L~~~~g~~ 69 (115)
T 3ffy_A 1 SNATAFVPALVASGLPNEKFCFEGFLPQKK-GRMTKLKSLVDEHRTMVFYESPHRLLKTLTQFAEYFGPE 69 (115)
T ss_dssp -CTTTHHHHHHHTTSCCSSEEEEESCCSST-THHHHHHHTTTCCSEEEEEECTTTHHHHHHHHHHHHCTT
T ss_pred CchhHHHHHHHHcCCCCCcEEEEeeCCCCc-cHHHHHHHHhCCCCeEEEEechHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999999766 467789999999999999999999999999999999754
No 24
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=80.70 E-value=13 Score=29.63 Aligned_cols=91 Identities=10% Similarity=0.115 Sum_probs=47.2
Q ss_pred CeEEEEecCCCCcc----chhHHHHHHHhhCCEEEEeCCCC----CHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhC
Q 024996 81 PGLYLVATPIGNLE----DITLRALRVLKSANVILSEDTRH----SGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQ 152 (259)
Q Consensus 81 g~l~iVGiGPGdpd----lLTlrAl~~L~~ADvV~~~~~~~----~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~ 152 (259)
+++.+| .|||.-. .+-..-.++++.+|.|+..+.+. ..++.+.+. .+...+. +.++..+.+.+.++.
T Consensus 64 ~riivv-f~~g~~s~r~k~~~~~~~~~~~~aD~vi~~~~~~~~~~~~~~~~~~~--~~~~~~~--d~~eai~~~~~~~~~ 138 (163)
T 3mvn_A 64 QRILAV-LEPRSNTMKMGVHKHELATSLQDADSVFIYQPPTIEWQVSEVLANLA--QPAISAD--DVDELVMRIVQQAKP 138 (163)
T ss_dssp SCEEEE-ECCC---------CHHHHHHHTTCSEEEEECC----CCHHHHHTTCC--SCEEEES--SHHHHHHHHHHHCCT
T ss_pred CcEEEE-ECCCCcchhhHHHHHHHHHHHhcCCEEEEECCCCcccCHHHHHhhCC--CCeEEEC--CHHHHHHHHHHhCCC
Confidence 466666 3666321 22233345677899887754221 112222222 1222222 446677777787777
Q ss_pred CCeEEEEecCCCCCCCchHHHHHHHhh
Q 024996 153 GEIVALISDAGTPGISDPGTELAKLCV 179 (259)
Q Consensus 153 G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~ 179 (259)
|..|.+. -+|+ ++..+..+++.++
T Consensus 139 gDvVLv~-Gsg~--~~~~~~~l~~~l~ 162 (163)
T 3mvn_A 139 NDHILIM-SNGA--FGGIHQKLLTALA 162 (163)
T ss_dssp TCEEEEE-CSSC--GGGHHHHHHHHTC
T ss_pred CCEEEEE-CCCC--HHHHHHHHHHHHh
Confidence 7544444 3566 8877788877654
No 25
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=71.19 E-value=13 Score=29.47 Aligned_cols=101 Identities=13% Similarity=0.138 Sum_probs=56.2
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCCc---------hHHHHHHHhhhCCCCEEEE---------------ccchHHHHHHH
Q 024996 144 QTVLNRLKQGEIVALISDAGTPGISD---------PGTELAKLCVDEKIPVVPI---------------PGASAFVAALS 199 (259)
Q Consensus 144 ~~I~e~l~~G~~Vv~Ls~~GDP~i~s---------~~~~Lv~~l~~~gi~vevI---------------PGISS~~aaaA 199 (259)
+.|...-++|.+++++| .+.....+ ....+...++..|+.+..+ |-+-.+..++.
T Consensus 49 e~L~~L~~~G~~l~i~T-n~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~v~~s~~~~~~~~~~~KP~p~~~~~~~~ 127 (176)
T 2fpr_A 49 PQLLKLQKAGYKLVMIT-NQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLA 127 (176)
T ss_dssp HHHHHHHHTTEEEEEEE-ECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEEECCCGGGCCSSSTTSCGGGGGGC-
T ss_pred HHHHHHHHCCCEEEEEE-CCccccccccchHhhhhhHHHHHHHHHHcCCCeeEEEEcCCCCcccccccCCCHHHHHHHHH
Confidence 33333335688999997 44322222 2234445556667775433 23556777888
Q ss_pred hCCCCCcceEEEEeecCCCcchHHHHHhhhCCCCeEEEEcCcc-cHHHHHHHHH
Q 024996 200 ASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPH-KLLQFLEETS 252 (259)
Q Consensus 200 ~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~TlVl~~~~~-~l~~il~~L~ 252 (259)
.+|++.++..++|. ...++....+.+-..|.+.... ..+++.+.|.
T Consensus 128 ~~gi~~~~~l~VGD-------~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~l~ 174 (176)
T 2fpr_A 128 EQAMDRANSYVIGD-------RATDIQLAENMGINGLRYDRETLNWPMIGEQLT 174 (176)
T ss_dssp ---CCGGGCEEEES-------SHHHHHHHHHHTSEEEECBTTTBCHHHHHHHTC
T ss_pred HcCCCHHHEEEEcC-------CHHHHHHHHHcCCeEEEEcCCcccHHHHHHHHh
Confidence 88998888888852 2355666655666666666554 4666665543
No 26
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=63.39 E-value=10 Score=30.00 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHh-----CCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHH
Q 024996 138 NESQREQTVLNRLK-----QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (259)
Q Consensus 138 ~~~~~~~~I~e~l~-----~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aa 197 (259)
+.++..+++.+.++ +|+-|.+++|-|.|+-. ...+.+. .+.++++|.|++--.+.
T Consensus 43 ~~~~~~~~i~~~i~~~~~d~g~GVLiL~DmGSp~n~--a~~l~~~---~~~~v~vI~gvnlpmll 102 (139)
T 3gdw_A 43 EVQTMYEQLRNQVITQKESLNNGILLLTDMGSLNSF--GNMLFEE---TGIRTKAITMTSTMIVL 102 (139)
T ss_dssp CHHHHHHHHHHHHHTSTGGGTTCEEEEECSGGGGGH--HHHHHHH---HCCCEEEECSCCHHHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCHHHH--HHHHHHh---hCCCEEEEeCCCHHHHH
Confidence 34555566655553 46778888888777443 2233222 26789999999865544
No 27
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=62.29 E-value=55 Score=25.71 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEc-cchHHHHHHHhCCCCCcceEEEEeecCCCc
Q 024996 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP-GASAFVAALSASGLATDEFTFVGFLPKHAR 219 (259)
Q Consensus 141 ~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIP-GISS~~aaaA~~Gipl~~~~~vg~lp~~~~ 219 (259)
+..+++.+.+.+.++|.++ -.|. -+....++...+...|+++..++ +...+...... +.-++..++ ++..+.
T Consensus 27 ~~l~~~~~~i~~a~~I~i~-G~G~--S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~~d~~i~--iS~sG~ 99 (187)
T 3sho_A 27 EAIEAAVEAICRADHVIVV-GMGF--SAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLAN--LRPTDLMIG--VSVWRY 99 (187)
T ss_dssp HHHHHHHHHHHHCSEEEEE-CCGG--GHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHT--CCTTEEEEE--ECCSSC
T ss_pred HHHHHHHHHHHhCCEEEEE-ecCc--hHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhc--CCCCCEEEE--EeCCCC
Confidence 3455666666666788887 3553 33345677777778899999999 45555544443 333455443 243332
Q ss_pred --chHHHHHhhhCCCCeEEEEcC
Q 024996 220 --SRTERLMLSANEVKTQIFYVP 240 (259)
Q Consensus 220 --~~~~~L~~l~~~~~TlVl~~~ 240 (259)
+-.+.++.+.+.+..+|....
T Consensus 100 t~~~~~~~~~ak~~g~~vi~IT~ 122 (187)
T 3sho_A 100 LRDTVAALAGAAERGVPTMALTD 122 (187)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHHHCCCCEEEEeC
Confidence 223344555455554444443
No 28
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=57.56 E-value=8.3 Score=30.08 Aligned_cols=55 Identities=16% Similarity=0.063 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHh---CCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHH
Q 024996 138 NESQREQTVLNRLK---QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197 (259)
Q Consensus 138 ~~~~~~~~I~e~l~---~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aa 197 (259)
+.++..+++.+.++ +|+-|.+++|-|.|+-. ...+.+. .+.++++|.|++--.+.
T Consensus 43 ~~~~~~~~i~~~i~~~d~~~GVLiL~DmGSp~n~--a~~l~~~---~~~~v~vI~gvnlpmll 100 (130)
T 3gx1_A 43 EVKAMYEKLKQTVVKLNPVKGVLILSDMGSLTSF--GNILTEE---LGIRTKTVTMVSTPVVL 100 (130)
T ss_dssp CHHHHHHHHHHHHHTSCCTTCEEEEECSGGGGTH--HHHHHHH---HCCCEEEECSCCHHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHH--HHHHHHh---cCCCEEEEeCCCHHHHH
Confidence 34555555555554 47778888888877543 2233322 25689999999865544
No 29
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=57.50 E-value=17 Score=36.51 Aligned_cols=90 Identities=7% Similarity=0.034 Sum_probs=54.3
Q ss_pred HHHHHhhCCEEEEeCCCCCHHHHh---hcCCCCcEEe----cCC-CCHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchH
Q 024996 100 ALRVLKSANVILSEDTRHSGKLLQ---YYNIKTPLLS----YHK-FNESQREQTVLNRLKQGEIVALISDAGTPGISDPG 171 (259)
Q Consensus 100 Al~~L~~ADvV~~~~~~~~~~ll~---~~~~~~~~i~----~~~-~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~ 171 (259)
-.++|++-|+++......-..+++ ....+..+.. +.. .....+++.+++++++|++|.++.+.|-.+....-
T Consensus 336 iF~~I~~~DiLl~~p~~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~~ds~Iv~ALi~AA~rGv~V~vLvel~arfdee~n 415 (705)
T 2o8r_A 336 LMEGIRRKDYLIHVPYYTYDYVVRLLMEAAISPDVSEIRLTQYRVAENSSIISALEAAAQSGKKVSVFVELKARFDEENN 415 (705)
T ss_dssp HHHHHHHCCEEEEETTBCSHHHHHHHHHHHTCTTEEEEEEEESCCCSCCHHHHHHHHHHHTTCEEEEEECCCSCC----C
T ss_pred HHHHHhhCCeEeeChhHhHHHHHHHHHHhccCCCceEEEEEEEEEcCCHHHHHHHHHHHHCCCEEEEEEeCCCCcchhhh
Confidence 578999999999864222233443 2223333322 111 12257889999999999999988665643332223
Q ss_pred HHHHHHhhhCCCCEEEEccc
Q 024996 172 TELAKLCVDEKIPVVPIPGA 191 (259)
Q Consensus 172 ~~Lv~~l~~~gi~vevIPGI 191 (259)
....+.+++.|++| +.|.
T Consensus 416 i~wa~~Le~aGv~V--v~g~ 433 (705)
T 2o8r_A 416 LRLSERMRRSGIRI--VYSM 433 (705)
T ss_dssp HHHHHHHHHHTCEE--EECC
T ss_pred HHHHHHHHHCCCEE--EEcc
Confidence 45668888888764 5564
No 30
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=56.47 E-value=28 Score=26.51 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIP 189 (259)
+...+.+.+++++|-+|-++. .+.+.........++.+.+.|+++...+
T Consensus 40 ~~i~~aL~~a~~rGV~Vril~-~~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 40 PDIMKALVAAKKRGVDVKIVI-DERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-ESTTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEE-eCccccccccHHHHHHHHHCCCeEEEcC
Confidence 456777888889999988884 4554433344566777888899998874
No 31
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=51.15 E-value=30 Score=30.21 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCchH--HHHHHHhhhCCCCEEE----EccchHHHHHHHhCCCCCcceEEEEe
Q 024996 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPG--TELAKLCVDEKIPVVP----IPGASAFVAALSASGLATDEFTFVGF 213 (259)
Q Consensus 140 ~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~--~~Lv~~l~~~gi~vev----IPGISS~~aaaA~~Gipl~~~~~vg~ 213 (259)
+...+.+...++.|++|+..| .|- +.+.. ..|.+.+++.|-.+.+ +||+-.+ .+ ++ -.++++.+.+.
T Consensus 71 ~av~e~~~~iL~aG~dvv~~S-~ga--Lad~~l~~~L~~aA~~gg~~l~vpSGAi~GlD~l-~a-a~--g~l~~V~~~t~ 143 (253)
T 1j5p_A 71 EAVKEYSLQILKNPVNYIIIS-TSA--FADEVFRERFFSELKNSPARVFFPSGAIGGLDVL-SS-IK--DFVKNVRIETI 143 (253)
T ss_dssp HHHHHHHHHHTTSSSEEEECC-GGG--GGSHHHHHHHHHHHHTCSCEEECCCTTCCCHHHH-HH-HG--GGEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEcC-hhh--hcCHHHHHHHHHHHHHCCCeEEecCCcccchhHH-HH-hc--CCccEEEEEEe
Confidence 344445778889999999997 441 22321 4555666666655544 6775433 22 22 34445555533
Q ss_pred ecCCCcchHHHHHhhhCCCCeEEEEcCcccHHHHHHHHHHhhCCC
Q 024996 214 LPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETSLLFGYS 258 (259)
Q Consensus 214 lp~~~~~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~~~~~ 258 (259)
-|. ..|. ..-....++|+++ .++....||.|
T Consensus 144 K~P------~~~~--~~l~e~~~~feG~------areA~~~fP~N 174 (253)
T 1j5p_A 144 KPP------KSLG--LDLKGKTVVFEGS------VEEASKLFPRN 174 (253)
T ss_dssp ECG------GGGT--CCCSSCEEEEEEC------HHHHHHHCSSS
T ss_pred CCh------HHhC--cccccceEEEEEc------HHHHHHHcCcc
Confidence 221 1121 2223556778776 35556677766
No 32
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=47.95 E-value=96 Score=24.13 Aligned_cols=91 Identities=15% Similarity=0.055 Sum_probs=55.2
Q ss_pred hCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCC--EE---EEcc--chHHHHHHHhCCCCCcceEEEEeecCCCcchHH
Q 024996 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIP--VV---PIPG--ASAFVAALSASGLATDEFTFVGFLPKHARSRTE 223 (259)
Q Consensus 151 ~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~--ve---vIPG--ISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~ 223 (259)
++|..++++| |.+. .......++..|+. +. +.++ +..+..++..+|++..+..++|. ...
T Consensus 82 ~~G~~v~ivT--~~~~----~~~~~~~l~~~gl~~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~igD-------~~~ 148 (187)
T 2wm8_A 82 SLGVPGAAAS--RTSE----IEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDD-------ERR 148 (187)
T ss_dssp HHTCCEEEEE--CCSC----HHHHHHHHHHTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEEES-------CHH
T ss_pred HCCceEEEEe--CCCC----hHHHHHHHHHcCcHhhcceeEEEeCchHHHHHHHHHHcCCChHHEEEEeC-------Ccc
Confidence 4588899996 4331 11222233344543 33 2333 34677888999999988888852 245
Q ss_pred HHHhhhCCCCeEEEEcCcccHHHHHHHHHHh
Q 024996 224 RLMLSANEVKTQIFYVPPHKLLQFLEETSLL 254 (259)
Q Consensus 224 ~L~~l~~~~~TlVl~~~~~~l~~il~~L~e~ 254 (259)
++..+.+.+-..|....+...+++.+.|.+.
T Consensus 149 Di~~a~~aG~~~i~v~~g~~~~~~~~~l~~~ 179 (187)
T 2wm8_A 149 NIVDVSKLGVTCIHIQNGMNLQTLSQGLETF 179 (187)
T ss_dssp HHHHHHTTTCEEEECSSSCCHHHHHHHHHHH
T ss_pred ChHHHHHcCCEEEEECCCCChHHHHHHHHHH
Confidence 6777777777777777666666665555443
No 33
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=46.74 E-value=21 Score=26.92 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=49.5
Q ss_pred cchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCC------CCHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 024996 94 EDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK------FNESQREQTVLNRLKQGEIVALISDAGTPGI 167 (259)
Q Consensus 94 dlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~------~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i 167 (259)
..||..-++.+.+.++++. |.|...+.-....+.+.-+.+.. ....+..+.+.+.+.+++.|++.|..|
T Consensus 18 ~~is~~e~~~~l~~~~~lI-DvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G---- 92 (129)
T 1tq1_A 18 SSVSVTVAHDLLLAGHRYL-DVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSG---- 92 (129)
T ss_dssp EEEEHHHHHHHHHHTCCEE-EESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSC----
T ss_pred cccCHHHHHHHhcCCCEEE-ECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCC----
Confidence 3466544443333567777 45554443332222222222210 111223333333345567788887555
Q ss_pred CchHHHHHHHhhhCCCC-EEEEcc-chHHHHHHHhCCCCC
Q 024996 168 SDPGTELAKLCVDEKIP-VVPIPG-ASAFVAALSASGLAT 205 (259)
Q Consensus 168 ~s~~~~Lv~~l~~~gi~-vevIPG-ISS~~aaaA~~Gipl 205 (259)
.+.......|++.|++ +.++.| +.... ..|.|+
T Consensus 93 -~rs~~aa~~L~~~G~~~v~~l~GG~~~W~----~~g~p~ 127 (129)
T 1tq1_A 93 -GRSIKATTDLLHAGFTGVKDIVGGYSAWA----KNGLPT 127 (129)
T ss_dssp -SHHHHHHHHHHHHHCCSEEEEECCHHHHH----HHTCCC
T ss_pred -cHHHHHHHHHHHcCCCCeEEeCCcHHHHH----hCCCCC
Confidence 2455666677777774 766654 55443 236654
No 34
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=45.99 E-value=77 Score=22.65 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=44.9
Q ss_pred chhHHH-HHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHH
Q 024996 95 DITLRA-LRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTE 173 (259)
Q Consensus 95 lLTlrA-l~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~ 173 (259)
.+|..- .+.+++-++++. |-|...+.-....+.+.-+ + ..+..+.+ +.+.+++.|++.|..|. +...
T Consensus 6 ~i~~~~l~~~~~~~~~~li-DvR~~~e~~~ghIpgA~~i--p---~~~l~~~~-~~l~~~~~ivvyc~~g~-----rs~~ 73 (108)
T 1gmx_A 6 CINVADAHQKLQEKEAVLV-DIRDPQSFAMGHAVQAFHL--T---NDTLGAFM-RDNDFDTPVMVMCYHGN-----SSKG 73 (108)
T ss_dssp EECHHHHHHHHHTTCCEEE-ECSCHHHHHHCEETTCEEC--C---HHHHHHHH-HHSCTTSCEEEECSSSS-----HHHH
T ss_pred ccCHHHHHHHHhCCCCEEE-EcCCHHHHHhCCCccCEeC--C---HHHHHHHH-HhcCCCCCEEEEcCCCc-----hHHH
Confidence 455444 445666678888 5565444332221222111 1 22222233 33566778888875552 5566
Q ss_pred HHHHhhhCCCC-EEEEcc
Q 024996 174 LAKLCVDEKIP-VVPIPG 190 (259)
Q Consensus 174 Lv~~l~~~gi~-vevIPG 190 (259)
....|++.|++ +.++.|
T Consensus 74 a~~~L~~~G~~~v~~l~G 91 (108)
T 1gmx_A 74 AAQYLLQQGYDVVYSIDG 91 (108)
T ss_dssp HHHHHHHHTCSSEEEETT
T ss_pred HHHHHHHcCCceEEEecC
Confidence 66777777874 766665
No 35
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=44.52 E-value=1.1e+02 Score=23.62 Aligned_cols=97 Identities=13% Similarity=0.057 Sum_probs=49.7
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCCCHHHH--------hhcCCCCcEEecCCCCHHHHHHHHHHHHhC
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLL--------QYYNIKTPLLSYHKFNESQREQTVLNRLKQ 152 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll--------~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~ 152 (259)
.++-|||+++ +++.+--+..+.|++...=+++-.....++. +.+.....+...- ...+...+.+.+.++.
T Consensus 23 ~~iaVVGas~-~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~-vp~~~~~~vv~~~~~~ 100 (144)
T 2d59_A 23 KKIALVGASP-KPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLF-VKPKLTMEYVEQAIKK 100 (144)
T ss_dssp CEEEEETCCS-CTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEEC-SCHHHHHHHHHHHHHH
T ss_pred CEEEEEccCC-CCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEE-eCHHHHHHHHHHHHHc
Confidence 4699999987 6666666666777766543443222111111 1111111111110 1222223333344455
Q ss_pred CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCE
Q 024996 153 GEIVALISDAGTPGISDPGTELAKLCVDEKIPV 185 (259)
Q Consensus 153 G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~v 185 (259)
|-+.+++ ..|.. ..++.+.+++.|+++
T Consensus 101 gi~~i~~-~~g~~-----~~~l~~~a~~~Gi~v 127 (144)
T 2d59_A 101 GAKVVWF-QYNTY-----NREASKKADEAGLII 127 (144)
T ss_dssp TCSEEEE-CTTCC-----CHHHHHHHHHTTCEE
T ss_pred CCCEEEE-CCCch-----HHHHHHHHHHcCCEE
Confidence 6666667 45642 477888888888763
No 36
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=44.07 E-value=89 Score=23.44 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=44.9
Q ss_pred chhH-HHHHHHh-hCCEEEEeCCCCCHHHHh-hcC------CCCcEEecCCCCHHHHHHHHHHHH--hCCCeEEEEecCC
Q 024996 95 DITL-RALRVLK-SANVILSEDTRHSGKLLQ-YYN------IKTPLLSYHKFNESQREQTVLNRL--KQGEIVALISDAG 163 (259)
Q Consensus 95 lLTl-rAl~~L~-~ADvV~~~~~~~~~~ll~-~~~------~~~~~i~~~~~~~~~~~~~I~e~l--~~G~~Vv~Ls~~G 163 (259)
.||. .+.+.++ .-+.++. |-|...+.-. .+. ....-+.+......+..+++.+.. .+++.|++.|..|
T Consensus 6 ~is~~e~~~~l~~~~~~~li-DVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~~~~~~~l~~~~~~~~~~~ivv~C~sG 84 (134)
T 1vee_A 6 SGSAKNAYTKLGTDDNAQLL-DIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYILDKFD 84 (134)
T ss_dssp BCCHHHHHHHHHHCTTEEEE-ECSCHHHHHHTCEECCTTTSCCCEECCCCGGGHHHHHHHHHTTCSCGGGCEEEEECSSS
T ss_pred ccCHHHHHHHHHhCCCeEEE-EcCCHHHHhhcCCCcccccCCceEEeecccccChhHHHHHHHHhCCCCCCEEEEEeCCC
Confidence 4554 4455666 3578888 5565544432 121 122222222211122333333222 4467888888666
Q ss_pred CCCCCchHHHHHHHhhhCCCC-EEEEcc
Q 024996 164 TPGISDPGTELAKLCVDEKIP-VVPIPG 190 (259)
Q Consensus 164 DP~i~s~~~~Lv~~l~~~gi~-vevIPG 190 (259)
. +.....+.|++.|+. +..+.|
T Consensus 85 ~-----RS~~aa~~L~~~G~~~v~~l~G 107 (134)
T 1vee_A 85 G-----NSELVAELVALNGFKSAYAIKD 107 (134)
T ss_dssp T-----THHHHHHHHHHHTCSEEEECTT
T ss_pred C-----cHHHHHHHHHHcCCcceEEecC
Confidence 3 445556667777885 655544
No 37
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=43.57 E-value=1.1e+02 Score=23.57 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=40.6
Q ss_pred ccchHHHHHHHhCCCCCcceEEEEeecCCCcchHHHHHhhhCCCCeEEEEcCcccHHHHHHHHH
Q 024996 189 PGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETS 252 (259)
Q Consensus 189 PGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~~~~~L~~l~~~~~TlVl~~~~~~l~~il~~L~ 252 (259)
|-+..+..++..+|++..+..++|. ...++..+...+-..+....+..+++.++.+.
T Consensus 151 p~~~~~~~~~~~~~~~~~~~~~igD-------~~~Di~~a~~aG~~~~~~~~~~~~~~~l~~~l 207 (211)
T 2i6x_A 151 PNEDIFLEMIADSGMKPEETLFIDD-------GPANVATAERLGFHTYCPDNGENWIPAITRLL 207 (211)
T ss_dssp TSHHHHHHHHHHHCCCGGGEEEECS-------CHHHHHHHHHTTCEEECCCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCChHHeEEeCC-------CHHHHHHHHHcCCEEEEECCHHHHHHHHHHHH
Confidence 4555788899999999988887742 23467766667777777777777776666544
No 38
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=42.72 E-value=96 Score=26.23 Aligned_cols=107 Identities=10% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCccchhHHHHHHHhh--CCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCC-
Q 024996 91 GNLEDITLRALRVLKS--ANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGI- 167 (259)
Q Consensus 91 GdpdlLTlrAl~~L~~--ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i- 167 (259)
|+.+.-...|.+.+++ +|+|+. +.....+++.. .+.+++... .+.-+..+.+...-+.+++|+++. .++..-
T Consensus 46 ~~le~av~~a~~~~~~~~~dVIIS--RGgta~~Lr~~-~~iPVV~I~-vs~~Dil~aL~~a~~~~~kIavVg-~~~~~~~ 120 (225)
T 2pju_A 46 LGFEKAVTYIRKKLANERCDAIIA--AGSNGAYLKSR-LSVPVILIK-PSGYDVLQFLAKAGKLTSSIGVVT-YQETIPA 120 (225)
T ss_dssp CCHHHHHHHHHHHTTTSCCSEEEE--EHHHHHHHHTT-CSSCEEEEC-CCHHHHHHHHHHTTCTTSCEEEEE-ESSCCHH
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEe--CChHHHHHHhh-CCCCEEEec-CCHHHHHHHHHHHHhhCCcEEEEe-CchhhhH
Q ss_pred -------------------CchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCC
Q 024996 168 -------------------SDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (259)
Q Consensus 168 -------------------~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gip 204 (259)
.+-....++.+++.|+++ |=|-....-.|.+.|++
T Consensus 121 ~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~v--VVG~~~~~~~A~~~Gl~ 174 (225)
T 2pju_A 121 LVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEA--VVGAGLITDLAEEAGMT 174 (225)
T ss_dssp HHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCE--EEESHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCE--EECCHHHHHHHHHcCCc
No 39
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=38.48 E-value=59 Score=25.59 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=27.0
Q ss_pred HHHHHHhCCCeEEEEecC--CCCCCCchHHHHHHHhhhC-----CCCEEEEccchHHHHH
Q 024996 145 TVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDE-----KIPVVPIPGASAFVAA 197 (259)
Q Consensus 145 ~I~e~l~~G~~Vv~Ls~~--GDP~i~s~~~~Lv~~l~~~-----gi~vevIPGISS~~aa 197 (259)
+.++.+.+|+.|.+++|- |.| ......+... +.++++|.|++--.+.
T Consensus 50 ~~i~~~~~~~gvlvLtDl~GGSp------~n~a~~~~~~~~~~~~~~v~vI~GvNLpmll 103 (150)
T 3ipr_A 50 TAIENVQQGDGVLVMVDLLSASP------YNQAVLVINELEPALQKKIFVVSGTNLPMVL 103 (150)
T ss_dssp HHHHHHCSSSCEEEEESSTTSHH------HHHHHHHHTTSCHHHHTTEEEEESCCHHHHH
T ss_pred HHHHhcCCCCCEEEEEeCCCCCH------HHHHHHHHHhhhhccCCCEEEEeCCCHHHHH
Confidence 334445567778888763 433 2222223222 4689999999865444
No 40
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=36.87 E-value=1.7e+02 Score=23.81 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=60.4
Q ss_pred CccchhHHHHHHHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCC---
Q 024996 92 NLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS--- 168 (259)
Q Consensus 92 dpdlLTlrAl~~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~--- 168 (259)
+.+.-...|.+.=+.+|+|+.- .. ...+++.. .+.+++... .+..+..+.+...-+.+++|+++. .++..-.
T Consensus 37 ~l~~~v~~a~~~~~~~dVIISR-Gg-ta~~lr~~-~~iPVV~I~-~s~~Dil~al~~a~~~~~kIavvg-~~~~~~~~~~ 111 (196)
T 2q5c_A 37 SLTRASKIAFGLQDEVDAIISR-GA-TSDYIKKS-VSIPSISIK-VTRFDTMRAVYNAKRFGNELALIA-YKHSIVDKHE 111 (196)
T ss_dssp CHHHHHHHHHHHTTTCSEEEEE-HH-HHHHHHTT-CSSCEEEEC-CCHHHHHHHHHHHGGGCSEEEEEE-ESSCSSCHHH
T ss_pred CHHHHHHHHHHhcCCCeEEEEC-Ch-HHHHHHHh-CCCCEEEEc-CCHhHHHHHHHHHHhhCCcEEEEe-CcchhhHHHH
Confidence 3454445555542468888883 22 23455543 356777654 244556666666656677999995 4443211
Q ss_pred -----------------chHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCC
Q 024996 169 -----------------DPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLA 204 (259)
Q Consensus 169 -----------------s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gip 204 (259)
+-....++.+++.|+++-| |-....-.|.+.|++
T Consensus 112 ~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvV--G~~~~~~~A~~~Gl~ 162 (196)
T 2q5c_A 112 IEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVV--SGKTVTDEAIKQGLY 162 (196)
T ss_dssp HHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEE--ECHHHHHHHHHTTCE
T ss_pred HHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEE--CCHHHHHHHHHcCCc
Confidence 1123556667777777633 333446666777775
No 41
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=36.36 E-value=79 Score=26.97 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEE-EccchHHHHHHHhCCCCCc
Q 024996 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVP-IPGASAFVAALSASGLATD 206 (259)
Q Consensus 142 ~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vev-IPGISS~~aaaA~~Gipl~ 206 (259)
.++...++++.| .++.+ ++| ++..++++++.+..-++.+ ||---.....+...|+++.
T Consensus 16 iA~~A~~~V~~g-~~Igl-gsG-----ST~~~~i~~L~~~~~~itv~VtnS~~~a~~l~~~gi~l~ 74 (224)
T 3kwm_A 16 AATEAAKSITTE-ITLGV-GTG-----STVGFLIEELVNYRDKIKTVVSSSEDSTRKLKALGFDVV 74 (224)
T ss_dssp HHHHHHTTCCSS-EEEEE-CCS-----HHHHHHHHHGGGCTTTEEEEEESCHHHHHHHHHTTCCBC
T ss_pred HHHHHHHhCCCC-CEEEE-CCc-----HHHHHHHHHHHhhcCceEEEECCcHHHHHHHHHcCCeEE
Confidence 344455555655 68888 666 6778899999876446665 6554444455566799874
No 42
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=35.28 E-value=59 Score=24.91 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHh---CCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHH
Q 024996 139 ESQREQTVLNRLK---QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196 (259)
Q Consensus 139 ~~~~~~~I~e~l~---~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~a 196 (259)
.++..+++.+.++ +++.|.+++|- +.|+-......+...+.++++|.|++--.+
T Consensus 41 ~~~~~~~i~~~i~~~~~~~gvliLtDl----~GGSp~n~a~~~~~~~~~v~vi~GvNlpml 97 (135)
T 1pdo_A 41 AETLIEKYNAQLAKLDTTKGVLFLVDT----WGGSPFNAASRIVVDKEHYEVIAGVNIPML 97 (135)
T ss_dssp HHHHHHHHHHHHTTSCCTTCEEEEESS----TTSHHHHHHHHHHTTCTTEEEEESCCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEC----CCCCHHHHHHHHHhccCCEEEEeCCCHHHH
Confidence 3455555655554 45668888763 222212222223222448999999986544
No 43
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=34.99 E-value=1.3e+02 Score=25.46 Aligned_cols=88 Identities=11% Similarity=0.079 Sum_probs=45.6
Q ss_pred CeEEEEecCCCCccchhHHHHHHHh-hCCEEEEeCCCCCHHHHhhcCC-CCcEEecCCCCHHHHHHHHHHHHhCCCeEEE
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLK-SANVILSEDTRHSGKLLQYYNI-KTPLLSYHKFNESQREQTVLNRLKQGEIVAL 158 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~-~ADvV~~~~~~~~~~ll~~~~~-~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~ 158 (259)
.++.|||.|. -=..++..+++ .|++.++.. ...+++.+.... ...++ ...+..+ .+ ++-.+++
T Consensus 32 k~VLVVGgG~----va~~ka~~Ll~~GA~VtVvap-~~~~~l~~l~~~~~i~~i-~~~~~~~--------dL-~~adLVI 96 (223)
T 3dfz_A 32 RSVLVVGGGT----IATRRIKGFLQEGAAITVVAP-TVSAEINEWEAKGQLRVK-RKKVGEE--------DL-LNVFFIV 96 (223)
T ss_dssp CCEEEECCSH----HHHHHHHHHGGGCCCEEEECS-SCCHHHHHHHHTTSCEEE-CSCCCGG--------GS-SSCSEEE
T ss_pred CEEEEECCCH----HHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHcCCcEEE-ECCCCHh--------Hh-CCCCEEE
Confidence 4699999883 23344444444 478888854 444443332211 12222 1222221 12 3567888
Q ss_pred EecCCCCCCCchHHHHHHHhhhCCCCEEEE
Q 024996 159 ISDAGTPGISDPGTELAKLCVDEKIPVVPI 188 (259)
Q Consensus 159 Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevI 188 (259)
.+ +|||-+. ..+.+.++ .|+.|.++
T Consensus 97 aA-T~d~~~N---~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 97 VA-TNDQAVN---KFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp EC-CCCTHHH---HHHHHHSC-TTCEEEC-
T ss_pred EC-CCCHHHH---HHHHHHHh-CCCEEEEe
Confidence 84 8998543 34444454 67776554
No 44
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=34.01 E-value=46 Score=28.51 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhC----CCCEEEEccchHHHHHHHhCCCCCc
Q 024996 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE----KIPVVPIPGASAFVAALSASGLATD 206 (259)
Q Consensus 142 ~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~----gi~vevIPGISS~~aaaA~~Gipl~ 206 (259)
.++...++++.| .++.+ .+| ++..++++++.+. +.++.+||---.....+...|+++.
T Consensus 8 iA~~A~~~V~dg-~vIgL-GsG-----ST~~~~i~~L~~~~~~~~~~i~~VttS~~t~~~l~~~Gi~l~ 69 (225)
T 3l7o_A 8 AGVRAAQYVEDG-MIVGL-GTG-----STAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQALGIPLK 69 (225)
T ss_dssp HHHHHHTTCCTT-CEEEE-CCS-----TTHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHHTCCBC
T ss_pred HHHHHHHhCCCC-CEEEE-CCc-----HHHHHHHHHHHHhhhhcCCCEEEEcCCHHHHHHHhccCceEE
Confidence 445555666666 67777 677 4556666666553 5566666654433445566799874
No 45
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=33.89 E-value=40 Score=24.07 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=25.8
Q ss_pred HhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024996 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (259)
Q Consensus 150 l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPG 190 (259)
+.+++.|++.|..| .+.......|++.|+++.++.|
T Consensus 53 l~~~~~iv~yC~~g-----~rs~~a~~~L~~~G~~v~~l~G 88 (103)
T 3eme_A 53 FNKNEIYYIVCAGG-----VRSAKVVEYLEANGIDAVNVEG 88 (103)
T ss_dssp CCTTSEEEEECSSS-----SHHHHHHHHHHTTTCEEEEETT
T ss_pred CCCCCeEEEECCCC-----hHHHHHHHHHHHCCCCeEEeCC
Confidence 35667888887444 3556677778888888888876
No 46
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=33.79 E-value=1.4e+02 Score=21.73 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=24.4
Q ss_pred HhCC-CeEEEEec-CCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024996 150 LKQG-EIVALISD-AGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (259)
Q Consensus 150 l~~G-~~Vv~Ls~-~GDP~i~s~~~~Lv~~l~~~gi~vevIPG 190 (259)
+.++ +.|++.|. .| .+.......|++.|+++.++.|
T Consensus 85 ~~~~~~~ivvyC~~~G-----~rs~~a~~~L~~~G~~v~~l~G 122 (134)
T 3g5j_A 85 LALNYDNIVIYCARGG-----MRSGSIVNLLSSLGVNVYQLEG 122 (134)
T ss_dssp HHTTCSEEEEECSSSS-----HHHHHHHHHHHHTTCCCEEETT
T ss_pred hccCCCeEEEEECCCC-----hHHHHHHHHHHHcCCceEEEeC
Confidence 4556 78888862 34 3445666777778888887766
No 47
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=33.78 E-value=37 Score=28.41 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=23.4
Q ss_pred CCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 024996 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (259)
Q Consensus 152 ~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIP 189 (259)
+|++|++. .+|--..|.-+.++++.|++.|++|.++-
T Consensus 6 ~~k~I~lg-iTGs~aa~~k~~~ll~~L~~~g~eV~vv~ 42 (201)
T 3lqk_A 6 AGKHVGFG-LTGSHCTYHEVLPQMERLVELGAKVTPFV 42 (201)
T ss_dssp TTCEEEEE-CCSCGGGGGGTHHHHHHHHHTTCEEEEEC
T ss_pred CCCEEEEE-EEChHHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 35666666 46666666555667777776676666664
No 48
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=33.52 E-value=25 Score=27.28 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=22.0
Q ss_pred CCCeEEEEecCCCCccchhHHHHHHHhhCCEEEEeC
Q 024996 79 LEPGLYLVATPIGNLEDITLRALRVLKSANVILSED 114 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~ 114 (259)
|.-.|.|||.||.. ||....=+-+..++++++.
T Consensus 1 Mt~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 1 MTVPIAIIGTGIAG---LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp -CCCEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CCCCEEEECcCHHH---HHHHHHHHHCCCCEEEEEC
Confidence 45569999999965 4544332334579999974
No 49
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=33.26 E-value=65 Score=24.72 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=34.2
Q ss_pred HhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 024996 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (259)
Q Consensus 150 l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS 193 (259)
++.+-.|+++ -.|....+....++.+.+++.||.+|+.+-..+
T Consensus 58 l~~~~evlii-GtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~~A 100 (122)
T 2ab1_A 58 VEKGVQTLVI-GRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQA 100 (122)
T ss_dssp HTTCCSEEEE-EECSSCCSCCCHHHHHHHHHTTCEEEEECHHHH
T ss_pred hhCCCCEEEE-CCCCCCccCCCHHHHHHHHHcCCEEEEeCHHHH
Confidence 4455678999 489998886778899999999999999875433
No 50
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=33.12 E-value=1.6e+02 Score=22.33 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=22.0
Q ss_pred hCCCeEEEEecCCCCCCCchHHHHHHHhhhCCC-CEEEEcc
Q 024996 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKI-PVVPIPG 190 (259)
Q Consensus 151 ~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi-~vevIPG 190 (259)
.+++.|++.|..| .+.......|++.|+ ++.++.|
T Consensus 78 ~~~~~ivvyC~~G-----~rS~~aa~~L~~~G~~~v~~l~G 113 (148)
T 2fsx_A 78 QHERPVIFLCRSG-----NRSIGAAEVATEAGITPAYNVLD 113 (148)
T ss_dssp ---CCEEEECSSS-----STHHHHHHHHHHTTCCSEEEETT
T ss_pred CCCCEEEEEcCCC-----hhHHHHHHHHHHcCCcceEEEcC
Confidence 4567788887555 244566677777888 4877766
No 51
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=32.25 E-value=1.6e+02 Score=22.54 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=17.0
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhC
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSA 107 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~A 107 (259)
.+|-|||+++ +++.+--.-.+.|.+.
T Consensus 14 ~~IavIGas~-~~g~~G~~~~~~L~~~ 39 (145)
T 2duw_A 14 RTIALVGASD-KPDRPSYRVMKYLLDQ 39 (145)
T ss_dssp CCEEEESCCS-CTTSHHHHHHHHHHHH
T ss_pred CEEEEECcCC-CCCChHHHHHHHHHHC
Confidence 3599999987 5555555555555544
No 52
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=31.55 E-value=80 Score=27.49 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEecCCC-CCCC-chHHHHHHHhhhCCCCEEEEccchHHHH--HHHhCCCC
Q 024996 138 NESQREQTVLNRLKQGEIVALISDAGT-PGIS-DPGTELAKLCVDEKIPVVPIPGASAFVA--ALSASGLA 204 (259)
Q Consensus 138 ~~~~~~~~I~e~l~~G~~Vv~Ls~~GD-P~i~-s~~~~Lv~~l~~~gi~vevIPGISS~~a--aaA~~Gip 204 (259)
+.+++.+.+.+..+.|-+-++++ .|. |.+. ....++++.+++.++.+.+-+|...-.. .....|+.
T Consensus 85 s~eei~~~i~~~~~~g~~~i~~~-gGe~p~~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~ag~~ 154 (348)
T 3iix_A 85 TPEEIVERARLAVQFGAKTIVLQ-SGEDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGAD 154 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEE-ESCCGGGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE-eCCCCCccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHhCCC
Confidence 45666666666555555444453 687 7665 5667888888888888887788653333 33334553
No 53
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=31.42 E-value=1.9e+02 Score=22.76 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHh------hhCCCCEEEEccchHH
Q 024996 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLC------VDEKIPVVPIPGASAF 194 (259)
Q Consensus 141 ~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l------~~~gi~vevIPGISS~ 194 (259)
+.++.+.+.+.++++|.++ -.|.- +....++...+ ...|+++..+++-++.
T Consensus 33 ~~~~~i~~~i~~a~~I~i~-G~G~S--~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~ 89 (199)
T 1x92_A 33 QASLVMVNALLNEGKILSC-GNGGS--AGDAQHFSSELLNRFERERPSLPAVALTTDSST 89 (199)
T ss_dssp HHHHHHHHHHHTTCCEEEE-CSTHH--HHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHH
T ss_pred HHHHHHHHHHHCCCEEEEE-cCchh--HHHHHHHHHHHhcCcccCCCCCceEecCCChhH
Confidence 4455566777788888887 35532 22345666666 4568888777654443
No 54
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=31.31 E-value=82 Score=22.56 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=44.0
Q ss_pred HHHh--hCCEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhh
Q 024996 102 RVLK--SANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV 179 (259)
Q Consensus 102 ~~L~--~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~ 179 (259)
+.|+ +-++++. |-|...+.-.....++.-+.+ .+..+.+.+.+.+++.|++.|..| .+.......|+
T Consensus 5 ~~l~~~~~~~~li-DvR~~~e~~~ghIpgAi~ip~-----~~l~~~~~~~l~~~~~ivvyc~~g-----~rs~~a~~~L~ 73 (106)
T 3hix_A 5 SRLEWGEPAFTIL-DVRDRSTYNDGHIMGAMAMPI-----EDLVDRASSSLEKSRDIYVYGAGD-----EQTSQAVNLLR 73 (106)
T ss_dssp --------CCEEE-ECSCHHHHHTCEETTCEECCG-----GGHHHHHHHHSCTTSCEEEECSSH-----HHHHHHHHHHH
T ss_pred HHHHcCCCCeEEE-ECCCHHHHhcCcCCCCEeCCH-----HHHHHHHHhcCCCCCeEEEEECCC-----ChHHHHHHHHH
Confidence 4444 3457777 455544333211122222222 223334445566677888886433 24456667778
Q ss_pred hCCCC-EEEEccchHHHHHHHhCCCCC
Q 024996 180 DEKIP-VVPIPGASAFVAALSASGLAT 205 (259)
Q Consensus 180 ~~gi~-vevIPGISS~~aaaA~~Gipl 205 (259)
+.|++ |.++.|- ..+....|.+.
T Consensus 74 ~~G~~~v~~l~GG---~~~W~~~g~~~ 97 (106)
T 3hix_A 74 SAGFEHVSELKGG---LAAWKAIGGPT 97 (106)
T ss_dssp HTTCSCEEECTTH---HHHHHHTTCCE
T ss_pred HcCCcCEEEecCC---HHHHHHCCCCC
Confidence 88884 8777653 22334556554
No 55
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=30.73 E-value=43 Score=23.81 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=25.2
Q ss_pred HhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024996 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (259)
Q Consensus 150 l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPG 190 (259)
+.+++.|++.|..| .+.......|++.|+++.++.|
T Consensus 53 l~~~~~ivvyC~~g-----~rs~~a~~~L~~~G~~v~~l~G 88 (100)
T 3foj_A 53 FNDNETYYIICKAG-----GRSAQVVQYLEQNGVNAVNVEG 88 (100)
T ss_dssp SCTTSEEEEECSSS-----HHHHHHHHHHHTTTCEEEEETT
T ss_pred CCCCCcEEEEcCCC-----chHHHHHHHHHHCCCCEEEecc
Confidence 45567888887444 3456667777888888877776
No 56
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=30.33 E-value=41 Score=28.37 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=26.7
Q ss_pred CCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHH
Q 024996 152 QGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAF 194 (259)
Q Consensus 152 ~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~ 194 (259)
+|++|++. .+|--..|-.+.++++.|++.|.+|.+|---++.
T Consensus 4 ~~k~Illg-iTGsiaayk~~~~ll~~L~~~g~eV~vv~T~~A~ 45 (207)
T 3mcu_A 4 KGKRIGFG-FTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYTVQ 45 (207)
T ss_dssp TTCEEEEE-ECSCGGGGTTSHHHHHHHHHTTCEEEEEECC---
T ss_pred CCCEEEEE-EEChHHHHHHHHHHHHHHHhCCCEEEEEEehHHH
Confidence 35677777 4776655543567778887778777777555443
No 57
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=30.31 E-value=1.2e+02 Score=23.45 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=25.7
Q ss_pred HHHHHHhhhCCCCEEE--EccchHHHHHHHhCCCCCcc
Q 024996 172 TELAKLCVDEKIPVVP--IPGASAFVAALSASGLATDE 207 (259)
Q Consensus 172 ~~Lv~~l~~~gi~vev--IPGISS~~aaaA~~Gipl~~ 207 (259)
..+.+.|.+.||++++ .|+..++.-++..+|++...
T Consensus 5 ~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~ 42 (152)
T 3op6_A 5 KKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQ 42 (152)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSC
T ss_pred HHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhh
Confidence 4677888889999877 57888888899999998863
No 58
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=30.03 E-value=1.3e+02 Score=22.78 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=50.9
Q ss_pred cchhHHH-HHHHh-hCCEEEEeCCCCCHHHHh-hc--CCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCC
Q 024996 94 EDITLRA-LRVLK-SANVILSEDTRHSGKLLQ-YY--NIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS 168 (259)
Q Consensus 94 dlLTlrA-l~~L~-~ADvV~~~~~~~~~~ll~-~~--~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~ 168 (259)
..||..- .+.++ +-++++. |-|...+.-. .. .+.+.-+.+...... +.+ ..+.+++.|++.|..|.
T Consensus 23 ~~is~~el~~~l~~~~~~~li-DVR~~~E~~~~gh~~IpgAinip~~~l~~~---~~~-~~l~~~~~ivvyC~~G~---- 93 (137)
T 1qxn_A 23 VMLSPKDAYKLLQENPDITLI-DVRDPDELKAMGKPDVKNYKHMSRGKLEPL---LAK-SGLDPEKPVVVFCKTAA---- 93 (137)
T ss_dssp EEECHHHHHHHHHHCTTSEEE-ECCCHHHHHHTCEECCSSEEECCTTTSHHH---HHH-HCCCTTSCEEEECCSSS----
T ss_pred cccCHHHHHHHHhcCCCeEEE-ECCCHHHHHhcCCcCCCCCEEcchHHhhhH---Hhh-ccCCCCCeEEEEcCCCc----
Confidence 4455444 44555 4568888 4565444433 22 223222222222111 112 23456678888875553
Q ss_pred chHHHHHHHhhhCCC-CEEEEccchHHHHHHHhCCCCC
Q 024996 169 DPGTELAKLCVDEKI-PVVPIPGASAFVAALSASGLAT 205 (259)
Q Consensus 169 s~~~~Lv~~l~~~gi-~vevIPGISS~~aaaA~~Gipl 205 (259)
+.......|++.|+ ++.++.|-- .+....|.|+
T Consensus 94 -rS~~aa~~L~~~G~~~v~~l~GG~---~~W~~~g~p~ 127 (137)
T 1qxn_A 94 -RAALAGKTLREYGFKTIYNSEGGM---DKWLEEGLPS 127 (137)
T ss_dssp -CHHHHHHHHHHHTCSCEEEESSCH---HHHHHTTCCE
T ss_pred -HHHHHHHHHHHcCCcceEEEcCcH---HHHHHCCCCc
Confidence 44556666777788 587776541 2334566664
No 59
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=30.03 E-value=1.2e+02 Score=28.19 Aligned_cols=50 Identities=20% Similarity=0.204 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhC-----CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 024996 141 QREQTVLNRLKQ-----GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (259)
Q Consensus 141 ~~~~~I~e~l~~-----G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS 193 (259)
...+.|++.+.. ..+|-++ |+-..-+-..++.+.+++.|+++.++|++|.
T Consensus 152 ~a~~al~~~l~~~~~~~~~~VNil---g~~~~~~d~~eik~lL~~~Gi~v~~l~d~s~ 206 (458)
T 1mio_B 152 NMVQGIVNYLSENTGAKNGKINVI---PGFVGPADMREIKRLFEAMDIPYIMFPDTSG 206 (458)
T ss_dssp HHHHHHHHHHCCCCSCCCSCEEEE---CCSCCHHHHHHHHHHHHHHTCCEEESSCCTT
T ss_pred HHHHHHHHHHccccCCCCCcEEEE---CCCCCHHHHHHHHHHHHHcCCcEEEeccccc
Confidence 344555555431 2357777 3322223336777778888999999888774
No 60
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=29.94 E-value=1.7e+02 Score=27.14 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhC---------CCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccch
Q 024996 141 QREQTVLNRLKQ---------GEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGAS 192 (259)
Q Consensus 141 ~~~~~I~e~l~~---------G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGIS 192 (259)
...+.|++.+.+ .++|.++ +|....-+-..++.+.+++.|+++.++|.+|
T Consensus 148 ~a~~al~~~l~~~~~~~~~~~~~~VNii--~G~~~~~~D~~eik~lL~~~Gi~v~~~~d~s 206 (458)
T 3pdi_B 148 AAVKAIVETLVPERRDQVGKRPRQVNVL--CSANLTPGDLEYIAESIESFGLRPLLIPDLS 206 (458)
T ss_dssp HHHHHHHHHSSCSSSCTTCCCSSEEEEE--ECTTCCHHHHHHHHHHHHTTTCEEEEESCHH
T ss_pred HHHHHHHHHhhccccCcCCCCCCeEEEE--eCCCCChHHHHHHHHHHHHcCCEEEEecCcc
Confidence 345556665432 2367777 4775444445678888888999999998775
No 61
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=29.92 E-value=2.7e+02 Score=24.03 Aligned_cols=109 Identities=12% Similarity=0.037 Sum_probs=60.3
Q ss_pred eEEEEecCCCCccch--hHHHHHHHhhC-CEEEEeCCCCCH---HHHhhcCCCCcEEe-cCCCCHHHHHHHHHHHHh-CC
Q 024996 82 GLYLVATPIGNLEDI--TLRALRVLKSA-NVILSEDTRHSG---KLLQYYNIKTPLLS-YHKFNESQREQTVLNRLK-QG 153 (259)
Q Consensus 82 ~l~iVGiGPGdpdlL--TlrAl~~L~~A-DvV~~~~~~~~~---~ll~~~~~~~~~i~-~~~~~~~~~~~~I~e~l~-~G 153 (259)
.+.=||.+++..+.+ -...++.|++. |+.+.=|+..++ .-++.+ ..+.++. .... . +..+.+.+.++ .|
T Consensus 49 diIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~~~~v~~aal~a~-~Ga~iINdvs~~-~-d~~~~~~~~~a~~~ 125 (271)
T 2yci_X 49 HYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDSTNPDAIEAGLKVH-RGHAMINSTSAD-Q-WKMDIFFPMAKKYE 125 (271)
T ss_dssp SEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECSCHHHHHHHHHHC-CSCCEEEEECSC-H-HHHHHHHHHHHHHT
T ss_pred CEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHHhC-CCCCEEEECCCC-c-cccHHHHHHHHHcC
Confidence 577788877654433 35667777764 876665665433 222333 2455553 2222 2 22233444333 35
Q ss_pred CeEEEEec--CCCCCC----CchHHHHHHHhhhCCCC---EEEEccchH
Q 024996 154 EIVALISD--AGTPGI----SDPGTELAKLCVDEKIP---VVPIPGASA 193 (259)
Q Consensus 154 ~~Vv~Ls~--~GDP~i----~s~~~~Lv~~l~~~gi~---vevIPGISS 193 (259)
-.|+++.- .|.|-- ..-..++++.+.+.|++ +-+=||+..
T Consensus 126 ~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gf 174 (271)
T 2yci_X 126 AAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILP 174 (271)
T ss_dssp CEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCC
T ss_pred CCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCc
Confidence 56777642 466653 22335567777788987 888899764
No 62
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=29.87 E-value=2e+02 Score=22.52 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhh------hCCCCEEEEcc
Q 024996 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCV------DEKIPVVPIPG 190 (259)
Q Consensus 141 ~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~------~~gi~vevIPG 190 (259)
+..+.+.+.+.++++|.++- .|.- +....++...+. ..|+++..+++
T Consensus 29 ~~~~~~~~~i~~a~~I~i~G-~G~S--~~~A~~~~~~l~~~~~~~~~g~~~~~~~~ 81 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCCG-NGTS--AANAQHFAASMINRFETERPSLPAIALNT 81 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEEE-STHH--HHHHHHHHHHHHTCSSSCCCCCCEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEEe-Cchh--hHHHHHHHHHHhccccccCCCCceEeecC
Confidence 56677888888888888883 5542 223345555565 56888877764
No 63
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=29.64 E-value=1.9e+02 Score=22.26 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCcc
Q 024996 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHARS 220 (259)
Q Consensus 141 ~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~~ 220 (259)
+..+++.+.+.+.++|.++- .|. -+....++...+...|.++..++... ...+.-++..++--.++...+
T Consensus 28 ~~i~~~~~~i~~a~~I~i~G-~G~--S~~~A~~~~~~l~~~g~~~~~~~~~~-------~~~~~~~d~vi~iS~sG~t~~ 97 (180)
T 1jeo_A 28 NKLDSLIDRIIKAKKIFIFG-VGR--SGYIGRCFAMRLMHLGFKSYFVGETT-------TPSYEKDDLLILISGSGRTES 97 (180)
T ss_dssp HHHHHHHHHHHHCSSEEEEC-CHH--HHHHHHHHHHHHHHTTCCEEETTSTT-------CCCCCTTCEEEEEESSSCCHH
T ss_pred HHHHHHHHHHHhCCEEEEEe-ecH--HHHHHHHHHHHHHHcCCeEEEeCCCc-------cccCCCCCEEEEEeCCCCcHH
Confidence 34566667776677888772 443 22234566666677788888875431 122333454443112333322
Q ss_pred hHHHHHhhhCCCCeEEEEc
Q 024996 221 RTERLMLSANEVKTQIFYV 239 (259)
Q Consensus 221 ~~~~L~~l~~~~~TlVl~~ 239 (259)
-.+.++.+.+.+..+|...
T Consensus 98 ~~~~~~~ak~~g~~vi~IT 116 (180)
T 1jeo_A 98 VLTVAKKAKNINNNIIAIV 116 (180)
T ss_dssp HHHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHHHHHCCCcEEEEe
Confidence 2344555555555444443
No 64
>3mtq_A Putative phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) permease...; PTS system fructose IIA component; 1.70A {Klebsiella pneumoniae subsp}
Probab=29.32 E-value=98 Score=24.80 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCeEEEEecC--CCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 024996 142 REQTVLNRLKQGEIVALISDA--GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (259)
Q Consensus 142 ~~~~I~e~l~~G~~Vv~Ls~~--GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~ 200 (259)
..++.++.+.+++.|.+++|- |.| ......+.+ +.++++|.|++--.+.-+.
T Consensus 66 ~~~~~i~~~~~~~gVLiLtDl~GGSP------~n~a~~~~~-~~~v~vItGvNLpMlle~~ 119 (159)
T 3mtq_A 66 QVEALVARFPAQDELIVITDIFAGSV------NNEFVRFLS-RPHFHLLSGLNLPLIIDLL 119 (159)
T ss_dssp HHHHHHHTSCTTSEEEEEESCTTSHH------HHHHHGGGG-STTEEEEECCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEeCCCCCH------HHHHHHHhc-CCCeEEEeCCCHHHHHHHH
Confidence 334444444557788888763 433 223323333 4689999999865554443
No 65
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=28.56 E-value=2.1e+02 Score=22.23 Aligned_cols=87 Identities=7% Similarity=-0.034 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCcceEEEEeecCCCc--
Q 024996 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHAR-- 219 (259)
Q Consensus 142 ~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~~~~~vg~lp~~~~-- 219 (259)
..+++.+.+.+.++|.++ -.|. -+....++...+...|+++..++... ...+.-+++.++ ++..+.
T Consensus 26 ~i~~~~~~i~~a~~I~i~-G~G~--S~~~A~~~~~~l~~~g~~~~~~~~~~-------~~~~~~~d~vI~--iS~sG~t~ 93 (186)
T 1m3s_A 26 EADQLADHILSSHQIFTA-GAGR--SGLMAKSFAMRLMHMGFNAHIVGEIL-------TPPLAEGDLVII--GSGSGETK 93 (186)
T ss_dssp HHHHHHHHHHHCSCEEEE-CSHH--HHHHHHHHHHHHHHTTCCEEETTSTT-------CCCCCTTCEEEE--ECSSSCCH
T ss_pred HHHHHHHHHHcCCeEEEE-ecCH--HHHHHHHHHHHHHhcCCeEEEeCccc-------ccCCCCCCEEEE--EcCCCCcH
Confidence 455666666666788877 2443 23334566677777888888875541 122333454443 243332
Q ss_pred chHHHHHhhhCCCCeEEEEcC
Q 024996 220 SRTERLMLSANEVKTQIFYVP 240 (259)
Q Consensus 220 ~~~~~L~~l~~~~~TlVl~~~ 240 (259)
+-.+.++.+.+.+..+|....
T Consensus 94 ~~~~~~~~ak~~g~~vi~IT~ 114 (186)
T 1m3s_A 94 SLIHTAAKAKSLHGIVAALTI 114 (186)
T ss_dssp HHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEEC
Confidence 222344555555554544433
No 66
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=27.50 E-value=64 Score=25.30 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=28.0
Q ss_pred HHHHHHH-hCCCeEEEEecC--CCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 024996 144 QTVLNRL-KQGEIVALISDA--GTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (259)
Q Consensus 144 ~~I~e~l-~~G~~Vv~Ls~~--GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~ 200 (259)
++.++.+ .+|+.|.+++|- |.| ......+.+ +.++++|.|++--...-+.
T Consensus 51 ~~~i~~~~~~~~gvliLtDl~GGSp------~n~a~~l~~-~~~v~vItGvNLpMlle~~ 103 (144)
T 3lfh_A 51 EKIIKEKLQEDKEIIIVVDLFGGSP------FNIALSMMK-EYDVKVITGINMPMLVELL 103 (144)
T ss_dssp HHHHHHHHTTTCEEEEEESSSSSHH------HHHHHHHHH-HHCCEEEESCCHHHHHHHH
T ss_pred HHHHHHhhCCCCcEEEEEeCCCCCH------HHHHHHHhc-CCCEEEEeCCCHHHHHHHH
Confidence 3344445 567788888763 433 222222222 3468999999865554433
No 67
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=26.35 E-value=89 Score=24.64 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=26.1
Q ss_pred HHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhC-CCCEEEEc
Q 024996 145 TVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE-KIPVVPIP 189 (259)
Q Consensus 145 ~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~-gi~vevIP 189 (259)
.+++.+..-..++++ +|| +-+..+++++++. |.+|.++.
T Consensus 101 D~~~~a~~~d~~vLv--SgD----~DF~plv~~lr~~~G~~V~v~g 140 (165)
T 2qip_A 101 DAIEIAPDVDRVILV--SGD----GDFSLLVERIQQRYNKKVTVYG 140 (165)
T ss_dssp HHHHHGGGCSEEEEE--CCC----GGGHHHHHHHHHHHCCEEEEEE
T ss_pred HHHHhhccCCEEEEE--ECC----hhHHHHHHHHHHHcCcEEEEEe
Confidence 344445444445555 688 5567889999996 99987773
No 68
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=26.30 E-value=1.6e+02 Score=22.53 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHh
Q 024996 146 VLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200 (259)
Q Consensus 146 I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~ 200 (259)
.++.+.. +.|.+++|- +.|+-......+...+-++++|.|++--.+.-+.
T Consensus 55 ~i~~~~~-~gvliLtDl----~GGSp~n~a~~~~~~~~~v~vi~GvNlpmlle~~ 104 (142)
T 3bed_A 55 ILKEAGN-VPTLVLADL----XGGTPCNVAMMAMGTYPQLRVVAGLNLAMAIEAA 104 (142)
T ss_dssp HHHHHCS-CCEEEEESS----TTSHHHHHHHHHTTTCTTEEEEESCCHHHHHHHH
T ss_pred HHHhcCC-CCEEEEEEC----CCCHHHHHHHHHhccCCCEEEEeCCCHHHHHHHH
Confidence 3344444 567777763 2222222223333334489999999876554443
No 69
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=26.19 E-value=1.3e+02 Score=26.50 Aligned_cols=118 Identities=10% Similarity=0.033 Sum_probs=60.8
Q ss_pred CCCCCeEEEEecCCCC--ccchhHHHHHHHhh--CCEEEEeCCCCC-H-------HHHhhcCC-CCcEEecCCCCHHHHH
Q 024996 77 GPLEPGLYLVATPIGN--LEDITLRALRVLKS--ANVILSEDTRHS-G-------KLLQYYNI-KTPLLSYHKFNESQRE 143 (259)
Q Consensus 77 ~~~~g~l~iVGiGPGd--pdlLTlrAl~~L~~--ADvV~~~~~~~~-~-------~ll~~~~~-~~~~i~~~~~~~~~~~ 143 (259)
.+.+|+|.+||.|..- ...|-.+.++.... +.++|.+-.... . +.++.++. ..+.+..... ++...
T Consensus 23 ~~~~g~l~iiGGgedk~~~~~i~~~~v~lagg~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r-~~a~~ 101 (291)
T 3en0_A 23 LSSQPAILIIGGAEDKVHGREILQTFWSRSGGNDAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDR-AQGDD 101 (291)
T ss_dssp -CCSCCEEEECSSCCSSSCCHHHHHHHHHTTGGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSG-GGGGC
T ss_pred CCCCceEEEEECCCCccChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCc-cccCC
Confidence 4456899999999852 23466666666643 678888632221 1 22333332 1122222111 11111
Q ss_pred HHHHHHHhCCCeEEEEecCCCCCCCchH------HHHHHHhhhCC-CCEEEEccchHHHHHHHh
Q 024996 144 QTVLNRLKQGEIVALISDAGTPGISDPG------TELAKLCVDEK-IPVVPIPGASAFVAALSA 200 (259)
Q Consensus 144 ~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~------~~Lv~~l~~~g-i~vevIPGISS~~aaaA~ 200 (259)
+.+.+.+++ -++++++ .||.+..... .+.++...+.| + ++-|.|+=..+++.
T Consensus 102 ~~~~~~l~~-ad~I~v~-GGnt~~l~~~l~~t~l~~~L~~~~~~G~~---~~~GtSAGA~i~~~ 160 (291)
T 3en0_A 102 SGYRLFVEQ-CTGIFMT-GGDQLRLCGLLADTPLMDRIRQRVHNGEI---SLAGTSAGAAVMGH 160 (291)
T ss_dssp HHHHHHHHH-CSEEEEC-CSCHHHHHHHHTTCHHHHHHHHHHHTTSS---EEEEETHHHHTTSS
T ss_pred HHHHHHHhc-CCEEEEC-CCCHHHHHHHHHhCCHHHHHHHHHHCCCe---EEEEeCHHHHhhhH
Confidence 223344443 4789994 8998654321 23444444455 5 35699876666543
No 70
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=26.13 E-value=1.8e+02 Score=24.27 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=44.5
Q ss_pred chhHHHHH-HHhhCCEEEEeCCCCCHHHHhhcCCCCcEEecCC-----------C-CHHHHHHHHHHH-HhCCCeEEEEe
Q 024996 95 DITLRALR-VLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHK-----------F-NESQREQTVLNR-LKQGEIVALIS 160 (259)
Q Consensus 95 lLTlrAl~-~L~~ADvV~~~~~~~~~~ll~~~~~~~~~i~~~~-----------~-~~~~~~~~I~e~-l~~G~~Vv~Ls 160 (259)
.||..-++ .+++.++++. |.|...+..+...+++..+.+.. . +.+...+.+.+. +.+++.|++.|
T Consensus 10 ~is~~~l~~~l~~~~~~ii-DvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc 88 (271)
T 1e0c_A 10 VIEPADLQARLSAPELILV-DLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVYD 88 (271)
T ss_dssp EECHHHHHTTTTCTTEEEE-ECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred eeeHHHHHHhccCCCeEEE-EcCCcchhhhCcCCCCEECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEEc
Confidence 45554443 4445678888 45554443332222222222211 1 112333333332 35677888886
Q ss_pred cCCCCCCCchHHHHHHHhhhCCC-CEEEEcc
Q 024996 161 DAGTPGISDPGTELAKLCVDEKI-PVVPIPG 190 (259)
Q Consensus 161 ~~GDP~i~s~~~~Lv~~l~~~gi-~vevIPG 190 (259)
..|. .........|+..|. +|.++.|
T Consensus 89 ~~g~----~~s~~a~~~L~~~G~~~v~~L~G 115 (271)
T 1e0c_A 89 DEGG----GWAGRFIWLLDVIGQQRYHYLNG 115 (271)
T ss_dssp SSSS----HHHHHHHHHHHHTTCCCEEEETT
T ss_pred CCCC----ccHHHHHHHHHHcCCCCeEEecC
Confidence 3331 134555666777777 4777765
No 71
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=25.94 E-value=2.2e+02 Score=21.68 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=48.5
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCCEEEEeCCCC--CHHHH--------hhcCCCCcEEecCCCCHHHHHHHHHHHH
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRH--SGKLL--------QYYNIKTPLLSYHKFNESQREQTVLNRL 150 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~ADvV~~~~~~~--~~~ll--------~~~~~~~~~i~~~~~~~~~~~~~I~e~l 150 (259)
.++-+||++. +++.+--+..+.|++...=+++-... ..++. +.+.....+...- ...+...+.+.+..
T Consensus 14 ~~vaVvGas~-~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~-vp~~~~~~v~~~~~ 91 (140)
T 1iuk_A 14 KTIAVLGAHK-DPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVF-RPPSALMDHLPEVL 91 (140)
T ss_dssp CEEEEETCCS-STTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEEC-SCHHHHTTTHHHHH
T ss_pred CEEEEECCCC-CCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEE-eCHHHHHHHHHHHH
Confidence 4699999986 67777777777777765444432211 11111 1111111111110 11222222222333
Q ss_pred hCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCE
Q 024996 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPV 185 (259)
Q Consensus 151 ~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~v 185 (259)
+.|-+.+++ ..|.. ..++.+.+++.|+++
T Consensus 92 ~~gi~~i~~-~~g~~-----~~~~~~~a~~~Gir~ 120 (140)
T 1iuk_A 92 ALRPGLVWL-QSGIR-----HPEFEKALKEAGIPV 120 (140)
T ss_dssp HHCCSCEEE-CTTCC-----CHHHHHHHHHTTCCE
T ss_pred HcCCCEEEE-cCCcC-----HHHHHHHHHHcCCEE
Confidence 445455566 35543 377888888888875
No 72
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=25.82 E-value=1.5e+02 Score=28.26 Aligned_cols=38 Identities=3% Similarity=0.054 Sum_probs=25.6
Q ss_pred CeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchH
Q 024996 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193 (259)
Q Consensus 154 ~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS 193 (259)
..|.++ .|.-.+-+-..++.+.+++.|+++.++|++|.
T Consensus 222 ~~VNIi--g~~~~~~gD~~elkrlL~~~Gi~v~~lpd~s~ 259 (523)
T 3u7q_B 222 KKINIV--PGFETYLGNFRVIKRMLSEMGVGYSLLSDPEE 259 (523)
T ss_dssp CCEEEE--CCSCCCHHHHHHHHHHHHHTTCCEEESSCCTT
T ss_pred CeEEEE--CCCCCChhHHHHHHHHHHHcCCeEEEecCchh
Confidence 467777 23211223336778888889999999998874
No 73
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=25.52 E-value=1.4e+02 Score=25.95 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhh---CCCCEEEEccchHHHHHHHhCCCCCc
Q 024996 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD---EKIPVVPIPGASAFVAALSASGLATD 206 (259)
Q Consensus 143 ~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~---~gi~vevIPGISS~~aaaA~~Gipl~ 206 (259)
++...++++.| .++.+ .+| ++..++++++.+ .|.++.+||---.....+...|+++.
T Consensus 32 A~~A~~~V~dg-~vIgL-GsG-----ST~~~~i~~L~~~~~~gl~ItvVttS~~ta~~l~~~GI~l~ 91 (255)
T 3hhe_A 32 ALKALEFVEDD-MRLGI-GSG-----STVNEFIPLLGERVANGLRVTCVATSQYSEQLCHKFGVPIS 91 (255)
T ss_dssp HHHHHTTCCTT-EEEEE-CCS-----HHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHTTCCBC
T ss_pred HHHHHHhCCCC-CEEEE-CCc-----HHHHHHHHHHHHhhccCCcEEEEcCCHHHHHHHHHcCCcEE
Confidence 34445555655 67888 666 566667776654 35678878765444556677899864
No 74
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=25.32 E-value=2.9e+02 Score=25.94 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhh
Q 024996 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD 180 (259)
Q Consensus 138 ~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~ 180 (259)
+.++..+.+.+.++.|..|.+. -.|| |+..+..+++.+++
T Consensus 480 ~~~eai~~~~~~a~~gD~VLv~-GaG~--~~~v~~~~~~~l~~ 519 (524)
T 3hn7_A 480 SVDDIIKHICTHAKAGDAIVIM-SNGG--FEGIHQRLLTALGN 519 (524)
T ss_dssp CHHHHHHHHHHHCCTTCEEEEE-ESSC--GGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCEEEEE-cCCC--HHHHHHHHHHHHHh
Confidence 3456677777777777544444 2455 88888888888764
No 75
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=25.25 E-value=2.7e+02 Score=22.43 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=43.6
Q ss_pred eEEEEecCCCCccchhHHHHHHHhh------CCEEEEeCCCCC----------------HHHHhhcCCCCcEEecCC---
Q 024996 82 GLYLVATPIGNLEDITLRALRVLKS------ANVILSEDTRHS----------------GKLLQYYNIKTPLLSYHK--- 136 (259)
Q Consensus 82 ~l~iVGiGPGdpdlLTlrAl~~L~~------ADvV~~~~~~~~----------------~~ll~~~~~~~~~i~~~~--- 136 (259)
+|.||-+|=-.++++.....+.++. .+++-.++.+.. +.+++.+..+..++.++.
T Consensus 6 ki~ii~VGk~k~~~~~~~i~eY~kRl~~~~~~ei~ei~~~k~~~~~s~~~~~~~~~~Eg~~il~~i~~~~~vI~LD~~Gk 85 (163)
T 4fak_A 6 KITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGK 85 (163)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHHHHTTTCEEEEEEECCCCCCTTCCHHHHHHHHHHHHHHHHHTCCTTSEEEEEEEEEE
T ss_pred EEEEEEecCcCcHHHHHHHHHHHHHccCcCCeEEEEecccccccccchhhHHHHHHHHHHHHHHhCCCCCEEEEEcCCCC
Confidence 6788888877777776555555543 455666543321 123444444433443321
Q ss_pred -CCHHHHHHHHHHHHhCC-CeEEEE
Q 024996 137 -FNESQREQTVLNRLKQG-EIVALI 159 (259)
Q Consensus 137 -~~~~~~~~~I~e~l~~G-~~Vv~L 159 (259)
.+.++.++.|.+....| ++++|+
T Consensus 86 ~~sS~~fA~~l~~~~~~g~~~i~Fv 110 (163)
T 4fak_A 86 MLSSEGLAQELNQRMTQGQSDFVFV 110 (163)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCHHHHHHHHHHHHhcCCcceEEE
Confidence 34566666666666666 467777
No 76
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=25.14 E-value=1.9e+02 Score=21.83 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=51.3
Q ss_pred CeEEEEecCCCCccchhHHHHHHHhhCC--EEEEeCCCCCHHHHh--------hcCCCCcEEecCCCCHHHHHHHHHHHH
Q 024996 81 PGLYLVATPIGNLEDITLRALRVLKSAN--VILSEDTRHSGKLLQ--------YYNIKTPLLSYHKFNESQREQTVLNRL 150 (259)
Q Consensus 81 g~l~iVGiGPGdpdlLTlrAl~~L~~AD--vV~~~~~~~~~~ll~--------~~~~~~~~i~~~~~~~~~~~~~I~e~l 150 (259)
..+-+||..+ +|+...-+..+.|++.. ++..-. ...++.. .+.. ......- ...+...+.+.+..
T Consensus 5 ~siAVVGaS~-~~~~~g~~v~~~L~~~g~~V~pVnP--~~~~i~G~~~y~sl~dlp~-vDlavi~-~p~~~v~~~v~e~~ 79 (122)
T 3ff4_A 5 KKTLILGATP-ETNRYAYLAAERLKSHGHEFIPVGR--KKGEVLGKTIINERPVIEG-VDTVTLY-INPQNQLSEYNYIL 79 (122)
T ss_dssp CCEEEETCCS-CTTSHHHHHHHHHHHHTCCEEEESS--SCSEETTEECBCSCCCCTT-CCEEEEC-SCHHHHGGGHHHHH
T ss_pred CEEEEEccCC-CCCCHHHHHHHHHHHCCCeEEEECC--CCCcCCCeeccCChHHCCC-CCEEEEE-eCHHHHHHHHHHHH
Confidence 4689999876 67777777777777664 444321 1222221 1111 1111110 12233333344444
Q ss_pred hCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEc
Q 024996 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189 (259)
Q Consensus 151 ~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIP 189 (259)
+.|-+.++++ +|- . ..++.+.+++.|++ +++
T Consensus 80 ~~g~k~v~~~-~G~---~--~~e~~~~a~~~Gir--vv~ 110 (122)
T 3ff4_A 80 SLKPKRVIFN-PGT---E--NEELEEILSENGIE--PVI 110 (122)
T ss_dssp HHCCSEEEEC-TTC---C--CHHHHHHHHHTTCE--EEE
T ss_pred hcCCCEEEEC-CCC---C--hHHHHHHHHHcCCe--EEC
Confidence 5565667774 663 3 36888888998875 464
No 77
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=25.11 E-value=1.5e+02 Score=25.73 Aligned_cols=37 Identities=14% Similarity=-0.037 Sum_probs=23.5
Q ss_pred hCCCeEEEEecCCCCCCCchHHHHHHHhhhCCC--CEEEE
Q 024996 151 KQGEIVALISDAGTPGISDPGTELAKLCVDEKI--PVVPI 188 (259)
Q Consensus 151 ~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi--~vevI 188 (259)
+.|-.-+.++ .|.|++.....++++.+++.+. .+.+.
T Consensus 64 ~~g~~~i~~t-GGEPll~~~l~~li~~~~~~~~~~~i~i~ 102 (340)
T 1tv8_A 64 ELGVKKIRIT-GGEPLMRRDLDVLIAKLNQIDGIEDIGLT 102 (340)
T ss_dssp HTTCCEEEEE-SSCGGGSTTHHHHHHHHTTCTTCCEEEEE
T ss_pred HCCCCEEEEe-CCCccchhhHHHHHHHHHhCCCCCeEEEE
Confidence 3454445554 7888887767777887777643 45443
No 78
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=23.91 E-value=80 Score=31.41 Aligned_cols=85 Identities=11% Similarity=0.210 Sum_probs=49.5
Q ss_pred HHHHHhhCCEEEEeCCCCCHHHHhhcC---CCCc--EE--ecCCC-CHHHHHHHHHHHHhCCCeEEEEecCCCCCCC-ch
Q 024996 100 ALRVLKSANVILSEDTRHSGKLLQYYN---IKTP--LL--SYHKF-NESQREQTVLNRLKQGEIVALISDAGTPGIS-DP 170 (259)
Q Consensus 100 Al~~L~~ADvV~~~~~~~~~~ll~~~~---~~~~--~i--~~~~~-~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~-s~ 170 (259)
-.++|++-|+++......-..+++.+. .+.. .+ ..... ......+.+++++++|.+|-++. .+-+.+. ..
T Consensus 331 if~~i~~~D~ll~~P~~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~~d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~~~ 409 (687)
T 1xdp_A 331 GFDAIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVV-ELQARFDEEA 409 (687)
T ss_dssp HHHHHHHSCEEEEETTBCTHHHHHHHHHHHHCTTEEEEEEEESSCCTTCHHHHHHHHHHHTTCEEEEEE-CTTCSSTTTT
T ss_pred hhHHHhcCCEEEECchhhhhhHHHHHHHHhhCCcceEEEEEeeeecCcHHHHHHHHHHHhcCCEEEEEE-CCCcccchhh
Confidence 478889999999864322233443322 1111 11 21112 33568888999999999999995 5554322 12
Q ss_pred HHHHHHHhhhCCCCE
Q 024996 171 GTELAKLCVDEKIPV 185 (259)
Q Consensus 171 ~~~Lv~~l~~~gi~v 185 (259)
.....+.+.+.|++|
T Consensus 410 n~~~~~~L~~aGV~V 424 (687)
T 1xdp_A 410 NIHWAKRLTEAGVHV 424 (687)
T ss_dssp TTTTTHHHHHHTCEE
T ss_pred HHHHHHHHHHCCCEE
Confidence 233456667778765
No 79
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=23.66 E-value=71 Score=25.04 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=12.0
Q ss_pred CCCCCCCchH-HHHHHHhhhCCCCEEEE
Q 024996 162 AGTPGISDPG-TELAKLCVDEKIPVVPI 188 (259)
Q Consensus 162 ~GDP~i~s~~-~~Lv~~l~~~gi~vevI 188 (259)
.|.|+++... .++++.+++.|+.+.+.
T Consensus 11 GGEPll~~~~~~~l~~~~~~~g~~~~l~ 38 (182)
T 3can_A 11 GGEPLLHPEFLIDILKRCGQQGIHRAVD 38 (182)
T ss_dssp SSTGGGSHHHHHHHHHHHHHTTCCEEEE
T ss_pred cccccCCHHHHHHHHHHHHHCCCcEEEE
Confidence 3555444333 24444444444444443
No 80
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=23.60 E-value=91 Score=26.58 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhC----CCCEEEEccchHHHHHHHhCCCCCc
Q 024996 142 REQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDE----KIPVVPIPGASAFVAALSASGLATD 206 (259)
Q Consensus 142 ~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~----gi~vevIPGISS~~aaaA~~Gipl~ 206 (259)
+++...++++.| .++++ ++| ++..++++++.+. +.++.+||---.....+...|+++.
T Consensus 10 iA~~A~~~I~~g-~~Igl-gsG-----ST~~~~~~~L~~~~~~~~l~itvVtnS~~~a~~l~~~gi~v~ 71 (226)
T 2pjm_A 10 VAKEAVKLVKDG-MVIGL-GTG-----STAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQYEIPLV 71 (226)
T ss_dssp HHHHHGGGCCTT-CEEEE-CCS-----HHHHHHHHHHHHHHHHHTCCCEEEESSHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHCCCC-CEEEE-CCC-----HHHHHHHHHHHhhhhccCCcEEEEeCcHHHHHHHHhcCCeEE
Confidence 344455555665 67888 677 4556677766542 4567777766555566778898864
No 81
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=23.54 E-value=3e+02 Score=23.07 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhh
Q 024996 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVD 180 (259)
Q Consensus 138 ~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~ 180 (259)
+.++..+++...++.|..++++ ..|.+.+......+++.+..
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~-~~~~~~~~~~~~~~~~~~~~ 154 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAV-TYGLTRVDPEVDAVVDRLYH 154 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEE-EECCCBCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCEEEEE-ECCCCCCCHHHHHHHHHHHh
Confidence 4466778888888988899988 47888776656666666644
No 82
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=23.50 E-value=2.1e+02 Score=21.67 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=49.9
Q ss_pred HHHHHhhC--CEEEEeCCCCCHHHHhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHH
Q 024996 100 ALRVLKSA--NVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKL 177 (259)
Q Consensus 100 Al~~L~~A--DvV~~~~~~~~~~ll~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~ 177 (259)
..+.|++- ++++. |-|...+.-.....++.-+.+ .+..+.+...+.+++.|++.|..| .+.......
T Consensus 7 l~~~l~~~~~~~~li-DvR~~~e~~~ghIpgAi~ip~-----~~l~~~~~~~l~~~~~ivvyC~~g-----~rs~~aa~~ 75 (141)
T 3ilm_A 7 LKSRLEWGEPAFTIL-DVRDRSTYNDGHIMGAMAMPI-----EDLVDRASSSLEKSRDIYVYGAGD-----EQTSQAVNL 75 (141)
T ss_dssp HHHHHHHSCSCEEEE-ECSCHHHHHHCEETTCEECCG-----GGHHHHHHTTSCTTSEEEEECSSH-----HHHHHHHHH
T ss_pred HHHHHhcCCCCEEEE-ECCCHHHHhCCCCCCCEEcCH-----HHHHHHHHhcCCCCCeEEEEECCC-----hHHHHHHHH
Confidence 34556543 58888 455544433222122222222 122233333455667888886333 244566777
Q ss_pred hhhCCCC-EEEEccchHHHHHHHhCCCCCcc
Q 024996 178 CVDEKIP-VVPIPGASAFVAALSASGLATDE 207 (259)
Q Consensus 178 l~~~gi~-vevIPGISS~~aaaA~~Gipl~~ 207 (259)
|++.|++ |.++.|- ..+....|.|+..
T Consensus 76 L~~~G~~~v~~l~GG---~~~W~~~g~p~~~ 103 (141)
T 3ilm_A 76 LRSAGFEHVSELKGG---LAAWKAIGGPTEG 103 (141)
T ss_dssp HHHTTCCSEEECTTH---HHHHHHTTCCEEE
T ss_pred HHHcCCCCEEEecCH---HHHHHHCCCCccc
Confidence 7888885 8777763 2234567888653
No 83
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=23.15 E-value=1e+02 Score=29.22 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=24.2
Q ss_pred eEEEEecCCCCCC-CchHHHHHHHhhhCCCCEEEEccchH
Q 024996 155 IVALISDAGTPGI-SDPGTELAKLCVDEKIPVVPIPGASA 193 (259)
Q Consensus 155 ~Vv~Ls~~GDP~i-~s~~~~Lv~~l~~~gi~vevIPGISS 193 (259)
.|-++ |+-.. -+-..++.+.|++.|+++.++|+.|.
T Consensus 219 ~VNIl---g~~~~~~gD~~eik~lL~~~Gi~v~~lpd~s~ 255 (519)
T 1qgu_B 219 KLNLV---TGFETYLGNFRVLKRMMEQMAVPCSLLSDPSE 255 (519)
T ss_dssp EEEEE---CCSCCCHHHHHHHHHHHHHHTCCEEESSCTTT
T ss_pred cEEEE---CCCCCCcccHHHHHHHHHHcCCeEEEecCccc
Confidence 46666 43232 22236777888888999999998863
No 84
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=22.63 E-value=2.7e+02 Score=23.56 Aligned_cols=43 Identities=9% Similarity=-0.070 Sum_probs=20.9
Q ss_pred HHHHHHHH-h--CCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCE
Q 024996 143 EQTVLNRL-K--QGEIVALISDAGTPGISDPGTELAKLCVDEKIPV 185 (259)
Q Consensus 143 ~~~I~e~l-~--~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~v 185 (259)
...+.+++ + ..++|+++...+++.-.+....+.+.+++.|+++
T Consensus 136 ~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v 181 (366)
T 3td9_A 136 GAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQV 181 (366)
T ss_dssp HHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEE
Confidence 34444554 3 2467887731233322222334455666666654
No 85
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=21.97 E-value=1.7e+02 Score=20.96 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=31.4
Q ss_pred HhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccchHHHHHHHhCCCCCc
Q 024996 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATD 206 (259)
Q Consensus 150 l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGISS~~aaaA~~Gipl~ 206 (259)
+.+++.|++.|..| .+.......|++.|+++.++.|- ..+....|.+.+
T Consensus 52 l~~~~~ivvyC~~G-----~rs~~aa~~L~~~G~~v~~l~GG---~~~W~~~~~~~~ 100 (108)
T 3gk5_A 52 LERDKKYAVICAHG-----NRSAAAVEFLSQLGLNIVDVEGG---IQSWIEEGYPVV 100 (108)
T ss_dssp SCTTSCEEEECSSS-----HHHHHHHHHHHTTTCCEEEETTH---HHHHHHTTCCCB
T ss_pred CCCCCeEEEEcCCC-----cHHHHHHHHHHHcCCCEEEEcCc---HHHHHHcCCCCC
Confidence 45667888887444 34566677788889888888763 123345565543
No 86
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=21.85 E-value=2.6e+02 Score=22.28 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEcc
Q 024996 141 QREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190 (259)
Q Consensus 141 ~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPG 190 (259)
+..+++.+.+.+.++|.++ -.|.- +....++..++...|.++..++.
T Consensus 35 ~~l~~~~~~i~~a~~I~i~-G~G~S--~~~A~~~~~~l~~~g~~~~~~~~ 81 (200)
T 1vim_A 35 ETVGEMIKLIDSARSIFVI-GAGRS--GYIAKAFAMRLMHLGYTVYVVGE 81 (200)
T ss_dssp HHHHHHHHHHHHSSCEEEE-CSHHH--HHHHHHHHHHHHHTTCCEEETTS
T ss_pred HHHHHHHHHHhcCCEEEEE-EecHH--HHHHHHHHHHHHhcCCeEEEeCC
Confidence 3455666777667788777 34532 22445667777777888887654
No 87
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=21.81 E-value=1.8e+02 Score=21.35 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=47.6
Q ss_pred HHHHHHhhC--CEEEEeCCCCCHHH-HhhcCCCCcEEecCCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCCchHHHHH
Q 024996 99 RALRVLKSA--NVILSEDTRHSGKL-LQYYNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELA 175 (259)
Q Consensus 99 rAl~~L~~A--DvV~~~~~~~~~~l-l~~~~~~~~~i~~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv 175 (259)
...+.+++- ++++. |-|...+. -....+++.-+ ...+..+.+ ..+.+++.|++.|..|.- +......
T Consensus 21 el~~~l~~~~~~~~li-DvR~~~e~~~~ghIpgA~ni-----p~~~l~~~~-~~l~~~~~ivvyC~~g~r---~~s~~a~ 90 (124)
T 3flh_A 21 TVLADMQNATGKYVVL-DVRNAPAQVKKDQIKGAIAM-----PAKDLATRI-GELDPAKTYVVYDWTGGT---TLGKTAL 90 (124)
T ss_dssp HHHHHHHHTCCCEEEE-ECCCSCHHHHCCEETTCEEC-----CHHHHHHHG-GGSCTTSEEEEECSSSSC---SHHHHHH
T ss_pred HHHHHHHcCCCCEEEE-ECCCHHHHHhcCcCCCCEEC-----CHHHHHHHH-hcCCCCCeEEEEeCCCCc---hHHHHHH
Confidence 345566664 48888 45554443 22111122111 122222222 234557788888755532 2234556
Q ss_pred HHhhhCCCCEEEEccchHHHHHHHhCCCCC
Q 024996 176 KLCVDEKIPVVPIPGASAFVAALSASGLAT 205 (259)
Q Consensus 176 ~~l~~~gi~vevIPGISS~~aaaA~~Gipl 205 (259)
..|++.|+++.++.|- ..+....|.|.
T Consensus 91 ~~L~~~G~~v~~l~GG---~~~W~~~~~p~ 117 (124)
T 3flh_A 91 LVLLSAGFEAYELAGA---LEGWKGMQLPL 117 (124)
T ss_dssp HHHHHHTCEEEEETTH---HHHHHHTTCCE
T ss_pred HHHHHcCCeEEEeCCc---HHHHHHcCCCC
Confidence 6677778888887763 22345556553
No 88
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=20.92 E-value=4.5e+02 Score=23.41 Aligned_cols=92 Identities=16% Similarity=0.166 Sum_probs=49.4
Q ss_pred HHHHHHHhh-CCEEEEeCCCCCHHHHhhcCCCCcEEe-cCCCCHHHHHHHHHHHHhCCCeEEEEecCCCCCCC-------
Q 024996 98 LRALRVLKS-ANVILSEDTRHSGKLLQYYNIKTPLLS-YHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS------- 168 (259)
Q Consensus 98 lrAl~~L~~-ADvV~~~~~~~~~~ll~~~~~~~~~i~-~~~~~~~~~~~~I~e~l~~G~~Vv~Ls~~GDP~i~------- 168 (259)
+..+++|++ .|+.+.=|+..++-+-+.+...+.++. ......++..+.+.+ .|-.|+++...|+|--.
T Consensus 94 ~pvI~~l~~~~~vpISIDT~~~~Va~aAl~aGa~iINDVsg~~~~~m~~v~a~---~g~~vVlMh~~G~P~tmq~~~~yd 170 (314)
T 3tr9_A 94 LPVIDAIKKRFPQLISVDTSRPRVMREAVNTGADMINDQRALQLDDALTTVSA---LKTPVCLMHFPSETRKPGSTTHFY 170 (314)
T ss_dssp HHHHHHHHHHCCSEEEEECSCHHHHHHHHHHTCCEEEETTTTCSTTHHHHHHH---HTCCEEEECCCCTTCCTTSSCHHH
T ss_pred HHHHHHHHhhCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCchHHHHHHHH---hCCeEEEECCCCCCcccccccccc
Confidence 345666765 488777677654322222323444542 222222233333322 24456666556888542
Q ss_pred ------chHHHHHHHhhhCCCC---EEEEccch
Q 024996 169 ------DPGTELAKLCVDEKIP---VVPIPGAS 192 (259)
Q Consensus 169 ------s~~~~Lv~~l~~~gi~---vevIPGIS 192 (259)
.-..+.++.+.+.||+ +-+=||+.
T Consensus 171 vv~ev~~~l~~~i~~a~~~GI~~~~IilDPG~G 203 (314)
T 3tr9_A 171 FLQSVKKELQESIQRCKKAGISEDRIIIDPGFG 203 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCC
Confidence 1233556677778995 88889986
No 89
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=20.67 E-value=1.7e+02 Score=25.46 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=28.0
Q ss_pred CeEEEEecCCCCCCCchHHHHHHHhhhCCCCEEEEccc
Q 024996 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191 (259)
Q Consensus 154 ~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~~gi~vevIPGI 191 (259)
++|++. -.|+|+++....++++.+++.|+.+.+....
T Consensus 143 ~~v~~s-ggGEPll~~~l~~ll~~~~~~g~~i~l~TNG 179 (342)
T 2yx0_A 143 THAAIS-LSGEPMLYPYMGDLVEEFHKRGFTTFIVTNG 179 (342)
T ss_dssp CEEEEC-SSSCGGGSTTHHHHHHHHHHTTCEEEEEECS
T ss_pred CEEEEc-CCCcccchhhHHHHHHHHHHCCCcEEEEcCC
Confidence 345654 3799999987788899998888888776433
No 90
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=20.51 E-value=33 Score=31.17 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=21.8
Q ss_pred CCCeEEEEecCCCCccchhHHHH-HHHhhCCEEEEeC
Q 024996 79 LEPGLYLVATPIGNLEDITLRAL-RVLKSANVILSED 114 (259)
Q Consensus 79 ~~g~l~iVGiGPGdpdlLTlrAl-~~L~~ADvV~~~~ 114 (259)
|..+|.|||.|++.. -+.+.+ +...+.+|.+.++
T Consensus 1 M~K~VvIIGgG~aGl--~aA~~L~~~~~~~~VtlI~~ 35 (430)
T 3hyw_A 1 MAKHVVVIGGGVGGI--ATAYNLRNLMPDLKITLISD 35 (430)
T ss_dssp -CCEEEEECSSHHHH--HHHHHHHHHCTTCEEEEECS
T ss_pred CCCcEEEECCCHHHH--HHHHHHhccCcCCeEEEEcC
Confidence 667899999999863 222222 3334578888854
No 91
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=20.03 E-value=75 Score=25.60 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=25.0
Q ss_pred EEEEecCCCCCCCch-HHHHHHHhhhCCCCEEEEc-c
Q 024996 156 VALISDAGTPGISDP-GTELAKLCVDEKIPVVPIP-G 190 (259)
Q Consensus 156 Vv~Ls~~GDP~i~s~-~~~Lv~~l~~~gi~vevIP-G 190 (259)
.+.++ .|+|++... ..++++.+++.|+.+.+.. |
T Consensus 72 ~i~~~-GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng 107 (245)
T 3c8f_A 72 GVTAS-GGEAILQAEFVRDWFRACKKEGIHTCLDTNG 107 (245)
T ss_dssp EEEEE-ESCGGGGHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred eEEEE-CCCcCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 34443 699999765 3688888888888887755 5
No 92
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=20.00 E-value=1.4e+02 Score=25.68 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=34.0
Q ss_pred HHHHHHHH-HHhCCCeEEEEecCCCCCCCchHHHHHHHhhh----CCC-CEE-EEccchHHHHHHHhCCCCCc
Q 024996 141 QREQTVLN-RLKQGEIVALISDAGTPGISDPGTELAKLCVD----EKI-PVV-PIPGASAFVAALSASGLATD 206 (259)
Q Consensus 141 ~~~~~I~e-~l~~G~~Vv~Ls~~GDP~i~s~~~~Lv~~l~~----~gi-~ve-vIPGISS~~aaaA~~Gipl~ 206 (259)
.+++...+ +++.| .++++ ++|. +..++++++.+ .++ ++. |-.+..+.+.+.. .|+++.
T Consensus 15 ~iA~~Aa~~~I~dg-~~IgL-gsGS-----T~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~-~gi~v~ 79 (244)
T 2f8m_A 15 IVAYKAVDEYVQSN-MTIGL-GTGS-----TVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARK-LGIPLT 79 (244)
T ss_dssp HHHHHHHHHHCCTT-CEEEE-CCST-----TTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHH-HTCCBC
T ss_pred HHHHHHHHHhCCCC-CEEEE-cChH-----HHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHH-CCCeEE
Confidence 34556666 77666 57778 7784 45567776643 333 344 4455555555555 488763
Done!