RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024996
(259 letters)
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU
genomics, PSI-2, protein structure initiative; 2.29A
{Lactobacillus brevis atcc 367}
Length = 296
Score = 296 bits (760), Expect = e-101
Identities = 83/190 (43%), Positives = 119/190 (62%)
Query: 67 NLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN 126
+ +Q S + LYLV TPIGNL+D+T RA++ L + ++I +EDTR++ KLL ++
Sbjct: 2 GHMEQQRSFQTETGGHLYLVPTPIGNLDDMTFRAVKTLTAVDLIAAEDTRNTQKLLNHFE 61
Query: 127 IKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVV 186
I T +S+H+ N +R ++ +LKQG +A +SDAG P ISDPG EL C+D IPVV
Sbjct: 62 ITTKQISFHEHNTQERIPQLIAKLKQGMQIAQVSDAGMPSISDPGHELVNACIDAHIPVV 121
Query: 187 PIPGASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQ 246
P+PGA+A + AL ASGLA F F GFL + + R + A +T IFY PH+L +
Sbjct: 122 PLPGANAGLTALIASGLAPQPFYFYGFLDRKPKDRKAEIAGLAQRPETLIFYEAPHRLKK 181
Query: 247 FLEETSLLFG 256
L+ + FG
Sbjct: 182 TLQNLAAGFG 191
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast
structural genomics consortium, BTR28, methyltrans PSI;
2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Length = 242
Score = 265 bits (681), Expect = 4e-90
Identities = 44/190 (23%), Positives = 89/190 (46%), Gaps = 12/190 (6%)
Query: 79 LEPGLYLVATPIGNL---EDITLRALRVLKSANVILSEDTRHSGKLLQYYN--IKTPLLS 133
+E LYL+ +G+ + + +++ + ED R + + L+ + I L+
Sbjct: 1 METALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLT 60
Query: 134 YHKFNE---SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190
++ N+ + L L G + +IS+AG P ++DPG ++ + +K+ V+P+ G
Sbjct: 61 FYPLNKHTSPEDISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVG 120
Query: 191 ASAFVAALSASGLATDEFTFVGFLPKHARSRTERL----MLSANEVKTQIFYVPPHKLLQ 246
S+ + ++ ASG F F G+LP R ++L E +TQ+F P++ +
Sbjct: 121 PSSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHK 180
Query: 247 FLEETSLLFG 256
+E+
Sbjct: 181 MIEDILQNCR 190
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum,
structural genom 2, protein structure initiative; 1.85A
{Chlorobaculum tepidum}
Length = 117
Score = 210 bits (537), Expect = 4e-70
Identities = 54/113 (47%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 80 EPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP-LLSYHKFN 138
+ LY+VATP+GNL+D+T RA+ L++A I EDTR + LL+++ I+ L+SYH FN
Sbjct: 5 KGTLYVVATPLGNLDDMTFRAVNTLRNAGAIACEDTRRTSILLKHFGIEGKRLVSYHSFN 64
Query: 139 ESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191
E + + V+ L++G VAL++DAGTP ISDPG +A +PVVP+PGA
Sbjct: 65 EERAVRQVIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPGA 117
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 116 bits (293), Expect = 9e-32
Identities = 22/149 (14%), Positives = 56/149 (37%), Gaps = 9/149 (6%)
Query: 72 QSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSED-----TRHSGKLLQYYN 126
G L V + +++DI+++ L ++ A+ + E ++ +++
Sbjct: 4 HHHHHGGHMSLLTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLLSSIEEMEEFFG 63
Query: 127 IKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVV 186
+ ++ + + + ++ R K +V L+ G P ++ + + + +
Sbjct: 64 KR--VVELERSDLEENSFRLIERAKSKSVVLLV--PGDPMVATTHSAIKLEAERKGVKTR 119
Query: 187 PIPGASAFVAALSASGLATDEFTFVGFLP 215
I GAS A +GL F +
Sbjct: 120 IIHGASISTAVCGLTGLHNYRFGKSATVS 148
>1wde_A Probable diphthine synthase; structural genomics, conserved
hypothetical protein, riken S genomics/proteomics
initiative, RSGI, transferase; 2.00A {Aeropyrum pernix}
SCOP: c.90.1.1
Length = 294
Score = 89.8 bits (222), Expect = 2e-21
Identities = 36/196 (18%), Positives = 70/196 (35%), Gaps = 24/196 (12%)
Query: 75 KRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG------KLLQYYNIK 128
RG L LV TL AL ++ A+V+ E G +++
Sbjct: 2 ARGREAVTLLLVGWGYAP-GMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEA 60
Query: 129 TPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPI 188
+ + + E +R + +++R + + AG P ++ + LA ++ + V I
Sbjct: 61 RVVEASRRDLE-ERSREIVSRALDAVVAVVT--AGDPMVATTHSSLAAEALEAGVAVRYI 117
Query: 189 PGASAFVAALSASGLATDEF---TFVGFLPKHARSRTERLMLSAN-----------EVKT 234
PG S AA A+ L+ F + + + + N +V
Sbjct: 118 PGVSGVQAARGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDE 177
Query: 235 QIFYVPPHKLLQFLEE 250
+ + P + + L E
Sbjct: 178 RGVQLSPGQGVSLLLE 193
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural
genomics, APC62130.1, methyltransferase, PSI-2, P
structure initiative; 2.00A {Bacteroides fragilis} PDB:
3fq6_A
Length = 115
Score = 83.6 bits (208), Expect = 1e-20
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 190 GASAFVAALSASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLE 249
A+AFV AL ASGL ++F F GFLP+ R +L +E +T +FY PH+LL+ L
Sbjct: 2 NATAFVPALVASGLPNEKFCFEGFLPQKK-GRMTKLKSLVDEHRTMVFYESPHRLLKTLT 60
Query: 250 ETSLLFG 256
+ + FG
Sbjct: 61 QFAEYFG 67
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic
parasitic protozoan, structural genomics, decode, UW,
SBRI; 2.49A {Entamoeba histolytica}
Length = 292
Score = 86.0 bits (212), Expect = 6e-20
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 11/160 (6%)
Query: 78 PLEPGLYLVATPIGNLEDITLRALRVLKSANVILSED----TRHSGKLLQYYNIKTPLLS 133
LY++ + + +DIT+R L +KS +++ E + L+ + K ++
Sbjct: 18 GPGSMLYIIGLGLYDEKDITVRGLEAVKSCDLVFLEHYTAILQCDVAKLEEFYGKKVIIG 77
Query: 134 YHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASA 193
E++ +Q +L K + L G + +++ C I V I AS
Sbjct: 78 DRDLVETEADQ-ILEPAKTKNVALL--VVGDVYGATTHSDIFVRCQKMGIEVKVIHNASI 134
Query: 194 FVAALSASGLATDEF---TFVGFLPKHARSRTERLMLSAN 230
A SGL F V F +H R + + N
Sbjct: 135 MNAI-GCSGLQLYRFGQTVSVCFWSEHWRPSSYYPKIKIN 173
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine,
transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii}
PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A*
2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A*
2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A*
...
Length = 265
Score = 76.6 bits (188), Expect = 1e-16
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 13/157 (8%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSE------DTRHSGKLLQYYNIKTPLLSYHK 136
LY + + + DIT++ L + K + + +E G++ + K + +
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQRLIG-KEIRVLSRE 61
Query: 137 FNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196
E E VL K+ ++ L G P ++ EL + I S + A
Sbjct: 62 DVELNFENIVLPLAKENDVAFL--TPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSA 119
Query: 197 ALSASGLATDEF---TFVGFLPKHARSRTERLMLSAN 230
+GL +F V + + + ++ N
Sbjct: 120 V-GITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKEN 155
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin,
methyltransferase, transfera; HET: SAH; 2.22A
{Rhodobacter capsulatus}
Length = 251
Score = 55.0 bits (133), Expect = 3e-09
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 20/138 (14%)
Query: 75 KRGPLEPGLYLV-ATPIGNLEDITLRALRVLKSANVI------LSEDTRHSGKLLQYYNI 127
+ + + P G + +T L A I ++ G L +
Sbjct: 3 HHHHMSGWVTVAGLGP-GREDLVTPEVTAALAEATDIVGYIPYVARIAPREGLTLHPTDN 61
Query: 128 KTPLLSYHKFNESQREQTVLNRLKQGEIVALIS--DAGTPGISDPGTE-LAKLCVDEKIP 184
+ E R L +G V ++S D G ++ E L
Sbjct: 62 RV---------ELDRATHALEMAAEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTE 112
Query: 185 VVPIPGASAFVAALSASG 202
+ +PG +A +AA +A+G
Sbjct: 113 IRILPGITAMLAAAAAAG 130
>2zvb_A Precorrin-3 C17-methyltransferase; plasmid, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SAH; 2.00A {Thermus
thermophilus} PDB: 2zvc_A*
Length = 295
Score = 52.0 bits (125), Expect = 4e-08
Identities = 44/194 (22%), Positives = 63/194 (32%), Gaps = 42/194 (21%)
Query: 83 LYLV-ATPIGNLEDITLRALRVLKSANVI---------LSEDTRHSGKLLQYYNIKTPLL 132
L+LV P G+L +T RA L+ A V+ L E +GK + +
Sbjct: 4 LFLVGMGP-GDLPGLTQRAREALEGAEVVIGYSTYVKLLEEMGLLAGKEVVRKGMTE--- 59
Query: 133 SYHKFNESQREQTVLNRLKQGEIVALIS--DAG-----------------TPGISDPGTE 173
E R + L R G+ VAL+S D G G
Sbjct: 60 ------ELDRAEEALERALSGQRVALVSGGDPGIYGMAAPVLELMEERGLKRVDGGVGLP 113
Query: 174 LAKLCVDEKIPVVPIPGASAFVAALSASG--LATDEFTF-VGFLPKHARSRTERLMLSAN 230
+ ++ + IPG +A A S G LA D + L RL +
Sbjct: 114 GRFAGEEGEVFLAVIPGVTAANAVASLLGSPLAHDTCLISLSDLLTPWPLIERRLHAAGQ 173
Query: 231 EVKTQIFYVPPHKL 244
+ Y P K
Sbjct: 174 GDFVVVLYNPQSKR 187
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole,
S-adenosylmethi transferase; HET: SAH; 2.00A
{Chlorobaculum tepidum} PDB: 2e0k_A*
Length = 259
Score = 51.6 bits (124), Expect = 5e-08
Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 39/194 (20%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVIL--------SEDTRHSGKLLQYYNIKTPLLSY 134
+ V+ G+ IT++AL L+ A+VI T + +L+ +++ L
Sbjct: 7 IISVSLGPGDPGLITVKALSQLREADVIYYPGTVSASGAVTSVALDILKEFDLDPSKLRG 66
Query: 135 HKF---------NESQRE--QTVLNRLKQGEIVALISDAGTPGISDP-----GTELAKLC 178
S ++ ++ G VA++ + G D + + +
Sbjct: 67 MLVPMSRSRGAAEASYAANYASMAEEVQAGRRVAVV----SVG--DGGFYSTASAIIERA 120
Query: 179 VDEKIPVVPIPGASAFVAALSASG--LATDEFTFVGFLPKHARSRTERLMLSANEVKTQI 236
+ + PG AF+AA SA+G LA + + L + L + T +
Sbjct: 121 RRDGLDCSMTPGIPAFIAAGSAAGMPLALQSDSVL-VLAQIDEI--GELERALVTHSTVV 177
Query: 237 FYVPPHKLLQFLEE 250
KL +E
Sbjct: 178 VM----KLSTVRDE 187
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase,
cobalamin biosynth methyltransferase; HET: SAH; 2.40A
{Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Length = 285
Score = 51.1 bits (123), Expect = 9e-08
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 38/152 (25%)
Query: 84 YLV-ATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
Y++ A P G+ + IT++ L++L+ A+V+L ++ L + L++ K
Sbjct: 24 YIIGAGP-GDPDLITVKGLKLLQQADVVL-----YADSL-----VSQDLIAKSK-----P 67
Query: 143 EQTVLNR--LKQGEIVALISDAGTPGIS-------DP-----GTELAKLCVDEKIPVVPI 188
VL + E+V + D G DP E L E + + +
Sbjct: 68 GAEVLKTAGMHLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKREGVDIEIV 127
Query: 189 PGASAFVAALSASGLATDEFTFVGFLPKHARS 220
PG ++ AA +A+ E T +P ++
Sbjct: 128 PGVTSVFAAAAAAEA---ELT----IPDLTQT 152
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid; 2.49A
{Clostridium difficile}
Length = 253
Score = 50.6 bits (122), Expect = 1e-07
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 38/152 (25%)
Query: 84 YLV-ATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
+ V A P G+ E ITL+ ++L +A+V++ ++G L + LL Y K
Sbjct: 8 HFVGAGP-GDKELITLKGYKLLSNADVVI-----YAGSL-----VNPELLEYCK-----E 51
Query: 143 EQTVLNR--LKQGEIVALISDAGTPGIS-------DP-----GTELAKLCVDEKIPVVPI 188
+ + N + EI+ ++ + S D E + I
Sbjct: 52 DCQIHNSAHMDLQEIIDVMREGIENNKSVVRLQTGDFSIYGSIREQVEDLNKLNIDYDCT 111
Query: 189 PGASAFVAALSASGLATDEFTFVGFLPKHARS 220
PG S+F+ A S+ G+ E+T +P+ ++S
Sbjct: 112 PGVSSFLGAASSLGV---EYT----VPEISQS 136
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A
{Rhodobacter capsulatus} PDB: 3nei_A
Length = 264
Score = 50.6 bits (122), Expect = 1e-07
Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 38/152 (25%)
Query: 84 YLV-ATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
+ + A P G + IT+R ++ S V L ++G L + LL++
Sbjct: 7 HFIGAGP-GAADLITIRGRDLIASCPVCL-----YAGSL-----VPEALLAHCP-----P 50
Query: 143 EQTVLN--RLKQGEIVALISDAGTPGIS-------DP-----GTELAKLCVDEKIPVVPI 188
++N + I+ I++A G D E + IP
Sbjct: 51 GAKIVNTAPMSLDAIIDTIAEAHAAGQDVARLHSGDLSIWSAMGEQLRRLRALNIPYDVT 110
Query: 189 PGASAFVAALSASGLATDEFTFVGFLPKHARS 220
PG +F AA + G E T LP A+S
Sbjct: 111 PGVPSFAAAAATLGA---ELT----LPGVAQS 135
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 232
Score = 45.8 bits (109), Expect = 4e-06
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 20/127 (15%)
Query: 96 ITLRALRVLKSANVILSEDTRHSGKLLQY----------------YNIKTPLLSYHKFNE 139
+TLRA+ VL+S VI + + + + + P+ E
Sbjct: 18 LTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILDPVFPMTDDRDELE 77
Query: 140 SQREQ---TVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVA 196
S + V L+ G VA I+ G P I + L + D +PG ++F A
Sbjct: 78 SHWDSAARMVAAELEDGRDVAFITL-GDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTA 136
Query: 197 ALSASGL 203
+ +G
Sbjct: 137 CAATAGR 143
>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD,
struc genomics, SAM, S-adenosylmethionine, MCSG; HET:
MSE SAM; 1.60A {Corynebacterium diphtheriae}
Length = 251
Score = 44.5 bits (105), Expect = 1e-05
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 31/151 (20%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSG--------KLLQYYNIKTPLL-- 132
+Y++ G+ E +TL+A+ L+ A I++ D K++ + TP+
Sbjct: 5 IYVIGIGTGSPEFLTLQAISGLRHAQAIVALDKGEQKSDLLALRQKIVDTHAPGTPIYAV 64
Query: 133 -----------------SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELA 175
+H T+ R VA + G P + D +
Sbjct: 65 TDPERDRNPDNYEEEVRRWHAERAHLLASTIRERTPDDGAVAFLV-WGDPSLYDSTLRII 123
Query: 176 KLCVDEK---IPVVPIPGASAFVAALSASGL 203
+ + + V IPG +A + G+
Sbjct: 124 EHMRNLEDLHADVKVIPGITAVQVLTAEHGI 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 4e-05
Identities = 59/330 (17%), Positives = 105/330 (31%), Gaps = 103/330 (31%)
Query: 6 RLPLMANSLATTGLSKTSW----QSRPLLSFLRTQTLLNSLSLYPKI------NYLLLCS 55
R L A + T GL+ W + P +L + + S P I +Y++ +
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI--SC---PLIGVIQLAHYVV--T 252
Query: 56 CSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIG------NLEDITLRALRVL----- 104
+P L+ ++ GL + A I + +A+ VL
Sbjct: 253 AKLLGFTPGELRSYLKGATGHS---QGL-VTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 105 --------KSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTV--LNR-LKQG 153
S + ED+ + + + +P+LS + Q + V N L G
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNE-----GVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 154 EIV--ALI-SD-----AGTP----GISDPGTELAKLCVDE-----KIP-----------V 185
+ V +L+ +G P G++ L K +IP
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLN---LTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 186 VPIPGASA-F-------VAALSASGLATDEFTFVGF---LP-KHARS----RTERLMLSA 229
+P+ ++ F + L L + +F +P R +S
Sbjct: 421 LPV---ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 230 NEVKTQIFYVPPH--KLLQFLEETSLL-FG 256
V I +P QF + T +L FG
Sbjct: 478 RIVD-CIIRLPVKWETTTQF-KATHILDFG 505
Score = 33.5 bits (76), Expect = 0.086
Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 40/165 (24%)
Query: 92 NLEDITLRALRVLKSANVILSEDT-RHSGKLL---QYYNIKT-P---LLSYHKFNESQRE 143
+ D L+ ++ K N + T R LL Q+ T P L+ F E +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF----TQPALTLMEKAAF-EDLKS 1749
Query: 144 QTVLNR--------LKQGEIVALISDAGTPGISDPGTELAKL------CVDEKIPVVPIP 189
+ ++ L GE AL S A I L ++ + +P +
Sbjct: 1750 KGLIPADATFAGHSL--GEYAALASLADVMSIES----LVEVVFYRGMTMQVAVPRDELG 1803
Query: 190 GASAFVAALS----ASGLATDEFTFVGFLPKHARSRTERLMLSAN 230
++ + A++ A+ + + +V + RT L+ N
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVV---ERVGKRTGWLVEIVN 1845
Score = 31.9 bits (72), Expect = 0.26
Identities = 46/277 (16%), Positives = 81/277 (29%), Gaps = 103/277 (37%)
Query: 23 SWQSRPLLSFLRTQTLLNSLSLYPKINYLLLCSCSQ----SQTSPDFSNLIL-------- 70
++ +RPL +LS + + ++LL + SQ F+ ++
Sbjct: 3 AYSTRPL-----------TLS-HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA 50
Query: 71 --EQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK 128
E ++ P E LV +G + ++++ ++L
Sbjct: 51 DDEPTT---PAE----LVGKFLGYV-------------SSLVEPSKVGQFDQVLN----- 85
Query: 129 TPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKL----------C 178
L +F E L + +I AL A +D T L K
Sbjct: 86 ---LCLTEF-----ENCYL---EGNDIHALA--AKLLQEND--TTLVKTKELIKNYITAR 130
Query: 179 VDEKIPVVPIPGASAFVAALSASGLAT---------------DEF--------TFVGFLP 215
+ K P SA A G A +E VG L
Sbjct: 131 IMAKRPF-DKKSNSALFRA-VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 216 KHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEETS 252
K + L + + + +L++LE S
Sbjct: 189 KFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENPS 223
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif,
SAM, NAD, phosphoserine,
transferase/oxidoreductase/lyase complex; HET: SEP PGE
SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11
c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Length = 457
Score = 42.6 bits (101), Expect = 7e-05
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 67 NLILEQSSKRGPLEPG-LYLV-ATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQY 124
N E+ G + LV A P G+ +TL+ L+ ++ A++++ D S ++
Sbjct: 201 NATTERLFSEPLDHRGEVVLVGAGP-GDAGLLTLKGLQQIQQADIVVY-DRLVSDDIMNL 258
Query: 125 YNIKTPLL------SYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLC 178
+ YH + + Q +L ++G+ V + G P I G E +
Sbjct: 259 VRRDADRVFVGKRAGYHCVPQEEINQILLREAQKGKRVVRLK-GGDPFIFGRGGEELETL 317
Query: 179 VDEKIPVVPIPGASAFVAALSASG 202
IP +PG +A + SG
Sbjct: 318 CHAGIPFSVVPGITAASGCSAYSG 341
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta,
alpha-beta-alpha sandwich, structural genomics, PSI, P
structure initiative; HET: SAH; 2.27A {Archaeoglobus
fulgidus} SCOP: c.90.1.1
Length = 221
Score = 40.9 bits (96), Expect = 1e-04
Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 11/127 (8%)
Query: 94 EDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQTVLNRLKQG 153
T RA +++ A VI R +L + + + R ++ ++
Sbjct: 34 GQTTERAKEIIERAEVIYG-SRRAL-ELAGVVDDSRARILRSFKGDEIRR--IMEEGRER 89
Query: 154 EIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGF 213
E+ + + G P ++ G L ++ D +I + P S+ AL+ + E V
Sbjct: 90 EVAVIST--GDPMVAGLGRVLREIAEDVEIKI--EPAISSVQVALARLKVDLSEVAVVDC 145
Query: 214 LPKHARS 220
HA+
Sbjct: 146 ---HAKD 149
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 41.6 bits (97), Expect = 2e-04
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 96 ITLRALRVLKSANVILSEDTRHSG--KLLQYYNIKTPLLSYHKFNESQR------EQTVL 147
+ L A R +NV++ H K + + + L+ + E +
Sbjct: 165 LCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIK 224
Query: 148 NRLKQGEIVALISDAGT--PGISDPGTELAKLCVDEKIPVV 186
++ G ++S P SD E+AK+C + IP +
Sbjct: 225 KEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHI 265
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH;
2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Length = 294
Score = 39.5 bits (93), Expect = 5e-04
Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 45/159 (28%)
Query: 69 ILEQSSKRGPLEPG-LYLV-ATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYN 126
++ S G + LV A P G+ +TLRA +L+ A V++ D + +L+
Sbjct: 12 VIPPSLLDVDFPAGSVALVGAGP-GDPGLLTLRAWALLQQAEVVVY-DRLVARELIALLP 69
Query: 127 IKTPLL------SYHKFNESQRE------------QTVLNRLKQGEIVALISDAGTPGIS 168
+ +H Q E + V+ RLK G
Sbjct: 70 ESCQRIYVGKRCGHHSL--PQEEINELLVRLARQQRRVV-RLKGG--------------- 111
Query: 169 DP-----GTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
DP G E + ++ + +PG +A + +G
Sbjct: 112 DPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAG 150
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 6e-04
Identities = 47/269 (17%), Positives = 82/269 (30%), Gaps = 76/269 (28%)
Query: 19 LSKTSWQSRPLLSFLRTQTLLNSLSLYP---KINYLLLC---SCSQSQTSPDFSNLILEQ 72
L+ S +L + + + LS++P I +LL N L +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK-LHK 413
Query: 73 SS--KRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIK-- 128
S ++ P E + + I L K N E H ++ +YNI
Sbjct: 414 YSLVEKQPKESTISI--------PSIYLELKV--KLEN----EYALHR-SIVDHYNIPKT 458
Query: 129 ------TPL---------LSYHKFNESQREQTVLNR--------LKQGEIVALISDAGTP 165
P + +H N E+ L R L+Q + +
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 166 GISDPGTELAK----LCVDEKIPVVPIPGASAFVAALSASGLATDEFTFVGFLPKHA--- 218
I + +L +C ++ P V A+ + FLPK
Sbjct: 519 SILNTLQQLKFYKPYICDND-------PKYERLVNAI------------LDFLPKIEENL 559
Query: 219 -RSRTERLMLSANEVKTQIFYVPPHKLLQ 246
S+ L+ A + + + HK +Q
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 31.4 bits (70), Expect = 0.31
Identities = 29/167 (17%), Positives = 49/167 (29%), Gaps = 43/167 (25%)
Query: 27 RPLLSFLRTQTLLNSLSLYPKINYLLLCSCS-QSQTSPDFSNLILEQSSKRGPLEPGLY- 84
+ +LS ++ S L S Q + F +L + Y
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN----------YK 92
Query: 85 LVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQREQ 144
+ +PI E S + + R + YN Y+ R Q
Sbjct: 93 FLMSPIKT-EQRQ-------PSMMTRMYIEQRD-----RLYNDNQVFAKYN----VSRLQ 135
Query: 145 TV------LNRLKQGEIVALISDAGTPGISDPG-TELA-KLCVDEKI 183
L L+ + V + G G G T +A +C+ K+
Sbjct: 136 PYLKLRQALLELRPAKNVLI---DGVLGS---GKTWVALDVCLSYKV 176
>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase,
transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
Length = 275
Score = 38.9 bits (90), Expect = 9e-04
Identities = 28/178 (15%), Positives = 53/178 (29%), Gaps = 36/178 (20%)
Query: 57 SQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPIGNLEDITLRALRVLKSANVILSEDTR 116
S S+ ++ + S L L+ GN IT +A+ + +A++IL
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMIEL----SLIGIGTGNPRHITGQAVDAMNAADLILIPLKG 57
Query: 117 HSGKLL---------QYYNIKTPLL---------------------SYHKFNESQREQTV 146
L + + + E+ +
Sbjct: 58 ADKSDLAGLRRQICAAHLTNPATKVIDFALPVRDASNPSYRKGVDDWHDAIAETWLSEIT 117
Query: 147 LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEK-IPVVPIPGASAFVAALSASGL 203
+ VAL+ G P + D +A+ + IPG +A A +A +
Sbjct: 118 AHVPGLEGRVALLV-WGDPSLYDSTLRIAERLKSRLPLTTKVIPGITAIQALCAAHAI 174
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: c.90.1.1
Length = 235
Score = 36.3 bits (85), Expect = 0.005
Identities = 39/138 (28%), Positives = 48/138 (34%), Gaps = 36/138 (26%)
Query: 84 YLV-ATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQY------YNIKTPLLSYHK 136
YLV A G E +TL+ALRVL+ A V+L D +L K K
Sbjct: 6 YLVGAGF-GGPEHLTLKALRVLEVAEVVLH-DRLVHPGVLALAKGELVPVGKEG--YGGK 61
Query: 137 FNESQREQTVLNRLKQGEIVALISDAGTPGIS-------DP-----GTELAKLCVDEKIP 184
Q I A + G DP G E A IP
Sbjct: 62 -------------TPQEAITARLIALAREGRVVARLKGGDPMVFGRGGEEALALRRAGIP 108
Query: 185 VVPIPGASAFVAALSASG 202
+PG ++ V ALSA G
Sbjct: 109 FEVVPGVTSAVGALSALG 126
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis,
cobalamin, SAM, SAH, uroporphyrin methyltransferase;
HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP:
c.90.1.1
Length = 280
Score = 36.0 bits (84), Expect = 0.007
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 39/157 (24%)
Query: 68 LILEQSSKRGPLEPG-LYLV-ATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQY- 124
+I + + LE G ++LV A P G+ +TL A L+ A+VI+ D + L+
Sbjct: 1 MIDDLFAGLPALEKGSVWLVGAGP-GDPGLLTLHAANALRQADVIVH-DALVNEDCLKLA 58
Query: 125 -------YNIKTPLLSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGIS-------DP 170
+ K KQ +I + + G DP
Sbjct: 59 RPGAVLEFAGKRG--GKP-------------SPKQRDISLRLVELARAGNRVLRLKGGDP 103
Query: 171 -----GTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
G E A V+ ++P +PG +A + L+ +G
Sbjct: 104 FVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAG 140
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 1.97A
{Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Length = 239
Score = 32.1 bits (74), Expect = 0.13
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 84 YLV-ATPIGNLEDITLRALRVLKSANVIL 111
YLV A P G+ E +TL+A R+LK A V+L
Sbjct: 4 YLVGAGP-GDPELLTLKAYRLLKEAPVVL 31
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase,
phosphorylation, transferase-antibiotic COMP; HET: ANP
B31; 2.10A {Enterococcus faecalis} PDB: 2b0q_A* 1l8t_A*
3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Length = 263
Score = 30.0 bits (67), Expect = 0.62
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 150 LKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE 207
+K G++ I D G G +D ++A + + F L G+ D
Sbjct: 197 VKDGKVSGFI-DLGRSGRADKWYDIAFCVRSIREDIGEEQYVELFFDLL---GIKPDW 250
>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1
Length = 290
Score = 30.0 bits (67), Expect = 0.71
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 157 ALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASGLATDE 207
+ + + ++ + V P A L LAT
Sbjct: 75 GEAAGMALLAET-GRARVVRVGFRPGVEVHIPPSPLAPYRYLRFLLLATGR 124
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium
binding site, enzyme function initiativ; 1.60A
{Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Length = 259
Score = 28.5 bits (64), Expect = 2.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 185 VVPIPGASAFVAALSASGL 203
V I GA+ + AL A+G+
Sbjct: 109 VTAIEGAAETLRALRAAGV 127
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 28.5 bits (64), Expect = 2.4
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 12/60 (20%)
Query: 31 SFLRTQTLLNS-LSLYPKIN-----------YLLLCSCSQSQTSPDFSNLILEQSSKRGP 78
+F + + + Y ++N L SCS T P F ++ E +
Sbjct: 289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHR 348
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.5
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 30/53 (56%)
Query: 36 QTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVAT 88
+ L SL LY + D S+ P L + AT
Sbjct: 23 KKLQASLKLY----------------ADD--------SA------PALAIKAT 45
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA
repair, phospho-peptide, protein binding; HET: SEP;
2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Length = 256
Score = 28.1 bits (62), Expect = 2.5
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 22/103 (21%)
Query: 31 SFLRTQTLLNSLSLYPKINYLLLCSCSQSQTSPDFSNLILEQSSKRGPLEPGLYLVATPI 90
LRT+ L SLS P + + L P+F +L+Q + + +
Sbjct: 67 KILRTEKFLKSLSFEP-LKFAL---------KPEFIIDLLKQIHSKKDKLSQINI----- 111
Query: 91 GNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLS 133
NL D + + N + T+ K+ + NI+ L
Sbjct: 112 -NLFDYEINGI------NESIISKTKLPTKVFERANIRCINLV 147
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 27.8 bits (62), Expect = 3.8
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 31 SFLRTQ-TLLNSLSLYPKIN-----------YLLLCSCSQSQTSPDFSNLILEQSSKRG 77
+F++ + L L Y +N L+ CSCSQ F ++I+ +K G
Sbjct: 299 AFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAG 357
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 27.8 bits (62), Expect = 4.0
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 173 ELAKLCVDEKIPVVPIPGASAFVAALSA 200
L +L + ++P+ G S V A+
Sbjct: 152 RLVQLAHKYNVVIIPMGGGSNIVGAIEP 179
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 27.7 bits (62), Expect = 4.2
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 11/44 (25%)
Query: 45 YPKIN-----------YLLLCSCSQSQTSPDFSNLILEQSSKRG 77
+ +L L SCS D + ++ G
Sbjct: 305 LVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLG 348
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase,
phosphonoacetaldehyde hydrolase, protein binding; HET:
EPE; 1.90A {Pseudomonas syringae PV}
Length = 196
Score = 27.2 bits (60), Expect = 4.6
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 185 VVPIPGASAFVAALSASGLAT 205
PGA + AL G+
Sbjct: 35 AQLTPGAQNALKALRDQGMPC 55
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 27.3 bits (61), Expect = 5.1
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 11/44 (25%)
Query: 45 YPKIN-----------YLLLCSCSQSQTSPDFSNLILEQSSKRG 77
Y IN LL SCS TS F +I + + G
Sbjct: 318 YKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAG 361
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 27.3 bits (61), Expect = 5.8
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 108 NVILSEDTRHS-GKLLQYYNIKT---PLLSYHKFNESQREQTVLNRLKQGEIVALISDAG 163
+I+ S K + +++ P+ + +E V + ++ ++ +I AG
Sbjct: 125 KIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKF----VKDAVEDYDVDGIIGIAG 180
Query: 164 TP--GISDPGTELAKLCVDEKIPV 185
T G D EL+K+ + I +
Sbjct: 181 TTELGTIDNIEELSKIAKENNIYI 204
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1
PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Length = 214
Score = 26.7 bits (59), Expect = 6.0
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 145 TVLNRLKQGEIVALISDAGTPGISDPGT--ELAKLCVDEKIPVVPIPGASAFVAALSASG 202
TVLN + +A +++AG PG L K + IP IPG S +
Sbjct: 74 TVLNP----QQLAEVTEAGAQFAISPGLTEPLLKAATEGTIP--LIPGISTVSELMLGMD 127
Query: 203 LATDEF 208
EF
Sbjct: 128 YGLKEF 133
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom
cerevisiae, structural genomics, PSI-2, protein
structure initiative; 1.60A {Saccharomyces cerevisiae}
Length = 275
Score = 27.0 bits (60), Expect = 6.1
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 185 VVPIPGASAFVAALSASGLAT 205
+ +PGA AL+A
Sbjct: 113 SIEVPGAVKLCNALNALPKEK 133
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 27.2 bits (61), Expect = 6.3
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 11/44 (25%)
Query: 45 YPKIN-----------YLLLCSCSQSQTSPDFSNLILEQSSKRG 77
Y K+ ++ + + + T F I + K+
Sbjct: 310 YHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQK 353
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Length = 148
Score = 26.4 bits (58), Expect = 6.5
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 92 NLEDITLRALRVLKSANVILSEDTRHSGKLLQY-----YNIKTPLLSYHKFNESQREQTV 146
L D V K+ ++ S ++ Q Y ++T L + + ++Q V
Sbjct: 67 RLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQT-LKDFQYVDRDGKDQGV 125
Query: 147 LNRLKQGEIVALISD 161
R K ++VAL+ D
Sbjct: 126 NVREKAKQLVALLRD 140
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 26.7 bits (60), Expect = 7.2
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 187 PIPGASAFVAALSASGLATDEFTFV 211
+PGA + L A+ + FV
Sbjct: 24 AVPGAQEALKRLRATSVM---VRFV 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.375
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,605,960
Number of extensions: 204221
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 50
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)