RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024996
(259 letters)
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix
[TaxId: 56636]}
Length = 289
Score = 127 bits (319), Expect = 7e-36
Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 14/172 (8%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQY-----YNIKTPLLSYHKF 137
L LV TL AL ++ A+V+ E G Y + ++ +
Sbjct: 5 LLLVGWGYAP-GMQTLEALDAVRRADVVYVESYTMPGSSWLYKSVVEAAGEARVVEASRR 63
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197
+ +R + +++R + + AG P ++ + LA ++ + V IPG S AA
Sbjct: 64 DLEERSREIVSRALDAVVAVVT--AGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAA 121
Query: 198 LSASGLATDEFTFVGFLPKHARSRT------ERLMLSANEVKTQIFYVPPHK 243
A+ L+ F LP R T + + T +
Sbjct: 122 RGATMLSFYRFGGTVTLPGPWRGVTPISVARRIYLNLCAGLHTTALLDVDER 173
>d1vhva_ c.90.1.1 (A:) Diphthine synthase, DphB {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 251
Score = 109 bits (274), Expect = 1e-29
Identities = 24/179 (13%), Positives = 65/179 (36%), Gaps = 11/179 (6%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSED-----TRHSGKLLQYYNIKTPLLSYHKF 137
L V + +++DI+++ L ++ A+ + E ++ +++ + +
Sbjct: 3 LTFVGLGLWDVKDISVKGLEAVREADEVYVEYYTSKLLSSIEEMEEFFGKRVV--ELERS 60
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197
+ + ++ R K +V L+ G P ++ + + + + I GAS A
Sbjct: 61 DLEENSFRLIERAKSKSVVLLV--PGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAV 118
Query: 198 LSASGLATDEFTFVGFLP-KHARSRTERLML-SANEVKTQIFYVPPHKLLQFLEETSLL 254
+GL F + +++ + + + T +F + + L
Sbjct: 119 CGLTGLHNYRFGKSATVSWHRSQTPVNVIKANRSIDAHTLLFLDLHPEPMTIGHAVENL 177
>d2deka1 c.90.1.1 (A:1-265) Diphthine synthase, DphB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 265
Score = 109 bits (274), Expect = 1e-29
Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 23/188 (12%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSED-----TRHSGKLLQYYNIKTPLLSYHKF 137
LY + + + DIT++ L + K + + +E + +Q K + +
Sbjct: 3 LYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSRED 62
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAA 197
E E VL K+ ++ L G P ++ EL + I S + +A
Sbjct: 63 VELNFENIVLPLAKENDVAFLT--PGDPLVATTHAELRIRAKRAGVESYVIHAPSIY-SA 119
Query: 198 LSASGLATDEFTFVGFLP---------------KHARSRTERLMLSANEVKTQIFYVPPH 242
+ +GL +F + K R +L + + Y+ +
Sbjct: 120 VGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTAN 179
Query: 243 KLLQFLEE 250
+ ++ L +
Sbjct: 180 EAMELLLK 187
>d1wyza1 c.90.1.1 (A:2-234) Putative methytransferase BT4190
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 233
Score = 107 bits (267), Expect = 6e-29
Identities = 37/189 (19%), Positives = 81/189 (42%), Gaps = 12/189 (6%)
Query: 80 EPGLYLVATPIGNL---EDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKT-----PL 131
E LYL+ +G+ + + +++ + ED R + + L+ + +
Sbjct: 1 ETALYLLPVTLGDTPLEQVLPSYNTEIIRGIRHFIVEDVRSARRFLKKVDREIDIDSLTF 60
Query: 132 LSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGA 191
+K + L L G + +IS+AG P ++DPG ++ + +K+ V+P+ G
Sbjct: 61 YPLNKHTSPEDISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVGP 120
Query: 192 SAFVAALSASGL---ATDEFTFVGFLPKHARSRTERL-MLSANEVKTQIFYVPPHKLLQF 247
S+ + ++ ASG + ++ P + + L E +TQ+F P++ +
Sbjct: 121 SSIILSVMASGFNGQSFAFHGYLPIEPGERAKKLKTLEQRVYAESQTQLFIETPYRNHKM 180
Query: 248 LEETSLLFG 256
+E+
Sbjct: 181 IEDILQNCR 189
>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT,
UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]}
Length = 265
Score = 94.2 bits (233), Expect = 1e-23
Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 16/187 (8%)
Query: 78 PLEPG-LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPL----- 131
LE G ++LV G+ +TL A L+ A+VI+ D + L+ L
Sbjct: 6 ALEKGSVWLVGAGPGDPGLLTLHAANALRQADVIVH-DALVNEDCLKLARPGAVLEFAGK 64
Query: 132 -LSYHKFNESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPG 190
+ ++ + G V + G P + G E A V+ ++P +PG
Sbjct: 65 RGGKPSPKQRDISLRLVELARAGNRVLRLK-GGDPFVFGRGGEEALTLVEHQVPFRIVPG 123
Query: 191 ASAFVAALSAS-------GLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHK 243
+A + L+ + + G A+ + Y+
Sbjct: 124 ITAGIGGLAYAGIPVTHREVNHAVTFLTGHDSSGLVPDRINWQGIASGSPVIVMYMAMKH 183
Query: 244 LLQFLEE 250
+
Sbjct: 184 IGAITAN 190
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase
(SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]}
Length = 235
Score = 92.3 bits (228), Expect = 4e-23
Identities = 42/169 (24%), Positives = 64/169 (37%), Gaps = 4/169 (2%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTP---LLSYHKFNE 139
+YLV G E +TL+ALRVL+ A V+L + H G L P K +
Sbjct: 5 VYLVGAGFGGPEHLTLKALRVLEVAEVVLHDRLVHPGVLALAKGELVPVGKEGYGGKTPQ 64
Query: 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALS 199
++ ++G +VA + G P + G E A IP +PG ++ V ALS
Sbjct: 65 EAITARLIALAREGRVVARLK-GGDPMVFGRGGEEALALRRAGIPFEVVPGVTSAVGALS 123
Query: 200 ASGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFL 248
A GL + A+ + + L + L
Sbjct: 124 ALGLPLTHRGLARSFAVATGHDPALPLPRADTLVLLMPLHTLGGLKERL 172
>d1cbfa_ c.90.1.1 (A:) Cobalt precorrin-4 methyltransferase CbiF
{Bacillus megaterium [TaxId: 1404]}
Length = 239
Score = 91.2 bits (225), Expect = 1e-22
Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 7/174 (4%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
LY++ G+ + IT++ L++L+ A+V+L D+ S L+ +L + +
Sbjct: 11 LYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEM 70
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
T+L+R+++G++V + G P + E L E + + +PG ++ AA +A+
Sbjct: 71 VGTMLDRMREGKMVVRVHT-GDPAMYGAIMEQMVLLKREGVDIEIVPGVTSVFAAAAAAE 129
Query: 203 LATDEF------TFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLEE 250
+ E+L A T ++ + ++E
Sbjct: 130 AELTIPDLTQTVILTRAEGRTPVPEFEKLTDLAKHKCTIALFLSSTLTKKVMKE 183
>d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and
5 {Salmonella typhimurium [TaxId: 90371]}
Length = 242
Score = 85.8 bits (211), Expect = 1e-20
Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 10/177 (5%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVIL-----SEDTRHSGKLLQYYNIKTPLLSYHKF 137
+ LV G+ +TL+ L+ ++ A++++ S+D + + YH
Sbjct: 3 VVLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHCV 62
Query: 138 NESQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFV-- 195
+ + Q +L ++G+ V + G P I G E + IP +PG +A
Sbjct: 63 PQEEINQILLREAQKGKRVVRL-KGGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGC 121
Query: 196 -AALSASGLATDEFTFVGFLPKHARSRTE-RLMLSANEVKTQIFYVPPHKLLQFLEE 250
A D V + H ++ E A E +T +FY+ ++ E+
Sbjct: 122 SAYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQEK 178
>d1va0a1 c.90.1.1 (A:2-226) Hypothetical protein TTHA0667 {Thermus
thermophilus [TaxId: 274]}
Length = 225
Score = 84.6 bits (208), Expect = 2e-20
Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 3/169 (1%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
+YLV G+ E +TL+A R+LK A V+L + ++L + + + ++
Sbjct: 3 VYLVGAGPGDPELLTLKAYRLLKEAPVVLYDRLVDE-RVLALAPGEKVYVGKEEGESEKQ 61
Query: 143 EQTV--LNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSA 200
E+ L R + + G P + G E + +PV +PG ++ +A+
Sbjct: 62 EEIHRLLLRHARAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVPGVTSLLASGLP 121
Query: 201 SGLATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKLLQFLE 249
F L A + ++ E
Sbjct: 122 LTHRGLAHGFAAVSGVLEGGGYPDLRPFARVPTLVVLMGVGRRVWIAKE 170
>d2bb3a1 c.90.1.1 (A:1-195) Precorrin-6y methylase CbiE
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 195
Score = 68.3 bits (166), Expect = 1e-14
Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 83 LYLVATPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQYYNIKTPLLSYHKFNESQR 142
+++V + T RA +++ A VI L+ + + +
Sbjct: 2 IWIVGSGTCR-GQTTERAKEIIERAEVIYGSRR-----ALELAGVVDDSRARILRSFKGD 55
Query: 143 EQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIPGASAFVAALSASG 202
E + + VA+IS G P ++ G L ++ D +I P S+ AL+
Sbjct: 56 EIRRIMEEGREREVAVIST-GDPMVAGLGRVLREIAEDVEIK--IEPAISSVQVALARLK 112
Query: 203 LATDEFTFVGFLPKHARSRTERLMLSANEVKTQIFYVPPHKL 244
+ E V K + L+ I L
Sbjct: 113 VDLSEVAVVDCHAKDFDAELTELL---KYRHLLILADSHFPL 151
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 28.4 bits (62), Expect = 0.96
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
Query: 98 LRALR-VLKSANVILSEDTRHSG--KLLQYYNIKTPLLSYHKFNESQRE-----QTVLNR 149
LR A I+ K + + ++ + R + +
Sbjct: 130 FLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQE 189
Query: 150 LKQGEIVALISDAGT--PGISDPGTELAKLCVDEKIPVV 186
L I+ L S P + D ELA +C + IP V
Sbjct: 190 LGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHV 228
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus
influenzae [TaxId: 727]}
Length = 212
Score = 27.2 bits (60), Expect = 1.7
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 140 SQREQTVLNRLKQGEIVALISDAGTPGISDPGTELAKLCVDEKIPVVPIP 189
S Q ++ +L++ +IV +I +D LA + V I
Sbjct: 1 SYTTQQIIEKLRELKIVPVI----ALDNADDILPLADTLAKNGLSVAEIT 46
>d1wiwa_ c.80.1.1 (A:) Glucose-6-phosphate isomerase-like protein
TTHA1346 {Thermus thermophilus [TaxId: 274]}
Length = 284
Score = 27.2 bits (60), Expect = 2.1
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 171 GTELAKLCVDEKIPVVPIPGASAFVAALSASGLAT 205
+ ++ + V P A L LAT
Sbjct: 88 RARVVRVGFRPGVEVHIPPSPLAPYRYLRFLLLAT 122
>d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]}
Length = 180
Score = 25.4 bits (55), Expect = 5.7
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 124 YYNIKTPLL--SYHKFNESQR--EQTVLNRLKQGEIVALISD 161
YYN L+ SY++ + + E T+ N L GE VA ISD
Sbjct: 70 YYNYLNNLVLASYNRCKQEKTFAESTIKNELTLGEFVAEISD 111
>d3d19a1 a.29.13.1 (A:11-144) Uncharacterized protein BCE_G9241_1042
{Bacillus cereus [TaxId: 1396]}
Length = 134
Score = 24.4 bits (53), Expect = 9.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 129 TPLLSYHKFNESQREQTVLNRLKQGEI 155
PLL H E+ + L +L +G++
Sbjct: 108 FPLLVDHTSREADYFRKRLIQLNEGKL 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.375
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 851,374
Number of extensions: 35555
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 18
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)