BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024997
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HOR|A Chain A, Crystal Structure Of Alliinase From Garlic- Apo Form
pdb|2HOX|A Chain A, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|B Chain B, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|C Chain C, Alliinase From Allium Sativum (Garlic)
pdb|2HOX|D Chain D, Alliinase From Allium Sativum (Garlic)
Length = 427
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 125/262 (47%), Positives = 183/262 (69%), Gaps = 9/262 (3%)
Query: 2 PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
PFYP+++EQT YF+ Y + G A + N S+ +E VT+PNNP+G + AV+KG
Sbjct: 163 PFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKG--C 220
Query: 62 KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
KSIYD Y+WPH+ PI ADE++++FT+SK TGH+GSRFGWA+IKDE+VY + Y++
Sbjct: 221 KSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK 280
Query: 122 NTMGVSRECQLRAFKLLKVVL------EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS 175
NT G RE QLR+ K+LK V+ + ++ FG+ +++RW N++ ++ S+RFS
Sbjct: 281 NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFS 340
Query: 176 LQEI-APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFV 234
QE+ +YC YF+++RPPSP+YAWVKCE EEDKDCY + +I + G F A +R+V
Sbjct: 341 YQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV 400
Query: 235 RLSLLKSQDDFDLLLHRLDELI 256
RLSL+K+QDDFD L++ L +++
Sbjct: 401 RLSLIKTQDDFDQLMYYLKDMV 422
>pdb|1LK9|A Chain A, The Three-Dimensional Structure Of Alliinase From Garlic
pdb|1LK9|B Chain B, The Three-Dimensional Structure Of Alliinase From Garlic
Length = 448
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 125/262 (47%), Positives = 183/262 (69%), Gaps = 9/262 (3%)
Query: 2 PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGPYA 61
PFYP+++EQT YF+ Y + G A + N S+ +E VT+PNNP+G + AV+KG
Sbjct: 163 PFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKG--C 220
Query: 62 KSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYISL 121
KSIYD Y+WPH+ PI ADE++++FT+SK TGH+GSRFGWA+IKDE+VY + Y++
Sbjct: 221 KSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK 280
Query: 122 NTMGVSRECQLRAFKLLKVVL------EDGGNNIFEFGYNTMKKRWENLSKIISLSNRFS 175
NT G RE QLR+ K+LK V+ + ++ FG+ +++RW N++ ++ S+RFS
Sbjct: 281 NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFS 340
Query: 176 LQEI-APQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARFV 234
QE+ +YC YF+++RPPSP+YAWVKCE EEDKDCY + +I + G F A +R+V
Sbjct: 341 YQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV 400
Query: 235 RLSLLKSQDDFDLLLHRLDELI 256
RLSL+K+QDDFD L++ L +++
Sbjct: 401 RLSLIKTQDDFDQLMYYLKDMV 422
>pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWN|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWN|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWN|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWN|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 206 bits (523), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 159/259 (61%), Gaps = 13/259 (5%)
Query: 2 PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGP-- 59
PFY Y E+T Y S YK+EG+A WG + +E VT+PNNPDG + + V+ P
Sbjct: 127 PFYSTYVEETTYVRSGMYKWEGDA--WGFDKKGPY-IELVTSPNNPDGTIRETVVNRPDD 183
Query: 60 -YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY 118
AK I+D AY+WPH+ PI D ++M+FT SK+TGHAGSR GWA++KD+ V ++M Y
Sbjct: 184 DEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVEY 243
Query: 119 ISLNTMGVSRECQLRAFKLLKVV-----LEDGGNNIFEFGYNTMKKRWENLSKIISLSNR 173
I +N++GVS+E Q+R K+L V+ E N F++G MK RWE L +++ S+
Sbjct: 244 IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDA 303
Query: 174 FSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARF 233
F+L + +C YF K PA+AW+ +E+ D L+ K++ R G++ ++ +
Sbjct: 304 FTLPKYPEAFCNYFGKSLESYPAFAWLGT--KEETDLVSELRRHKVMSRAGERCGSDKKH 361
Query: 234 VRLSLLKSQDDFDLLLHRL 252
VR+S+L +D F++ L RL
Sbjct: 362 VRVSMLSREDVFNVFLERL 380
>pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWO|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWO|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWO|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWO|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 204 bits (518), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 104/259 (40%), Positives = 158/259 (61%), Gaps = 13/259 (5%)
Query: 2 PFYPLYQEQTDYFESVDYKFEGEANLWGNASSDTHLVEFVTAPNNPDGQMNKAVLKGP-- 59
PFY Y E+T Y S YK+EG+A WG + +E VT+PNNPDG + + V+ P
Sbjct: 127 PFYSTYVEETTYVRSGMYKWEGDA--WGFDKKGPY-IELVTSPNNPDGTIRETVVNRPDD 183
Query: 60 -YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAY 118
AK I+D AY+WPH+ PI D ++M+FT S +TGHAGSR GWA++KD+ V ++M Y
Sbjct: 184 DEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSXITGHAGSRIGWALVKDKEVAKKMVEY 243
Query: 119 ISLNTMGVSRECQLRAFKLLKVV-----LEDGGNNIFEFGYNTMKKRWENLSKIISLSNR 173
I +N++GVS+E Q+R K+L V+ E N F++G MK RWE L +++ S+
Sbjct: 244 IIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDA 303
Query: 174 FSLQEIAPQYCTYFKKIRPPSPAYAWVKCEREEDKDCYGILKAAKIIGREGKKFRAEARF 233
F+L + +C YF K PA+AW+ +E+ D L+ K++ R G++ ++ +
Sbjct: 304 FTLPKYPEAFCNYFGKSLESYPAFAWLGT--KEETDLVSELRRHKVMSRAGERCGSDKKH 361
Query: 234 VRLSLLKSQDDFDLLLHRL 252
VR+S+L +D F++ L RL
Sbjct: 362 VRVSMLSREDVFNVFLERL 380
>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
Length = 456
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 23/127 (18%)
Query: 7 YQEQTDYFESVDYKFEGEANLW--GNASSDTHLVEFVTAPNNPDG------QMNKAVLKG 58
+ E+T +++V Y G N + A + V F +PNNP G Q+++ V
Sbjct: 182 FHEKTKKYQNVVYMPCGPNNSFFPDLAMTPRTDVIFFCSPNNPTGYVASRKQLHQLV--- 238
Query: 59 PYAKS-----IYDHAY--FWPHFAP-----IPAPADEELMIFTISKLTGHAGSRFGWAVI 106
+AK+ I+D AY F +P IP + + + + SK G G R GW++I
Sbjct: 239 DFAKTNGSIIIFDSAYAAFIEDGSPRSIYEIPGAREVAIEVSSFSKFAGFTGVRLGWSII 298
Query: 107 KDEAVYQ 113
DE +Y
Sbjct: 299 PDELLYS 305
>pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Chlamydia Trachomatis
pdb|3ASB|A Chain A, Crystal Structure Of Plp-Bound Ll-Diaminopimelate
Aminotransferase From Chlamydia Trachomatis
Length = 400
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 34 DTHL-VEFVTAPNNPDGQ-MNKAVLKGPYAKSI-------YDHAYFWPHFAP-------- 76
DTH+ + + +PNNP G +NK L+ +I +D AY P
Sbjct: 161 DTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFE 220
Query: 77 IPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVY 112
IP + I + SK G AG R GW VI E Y
Sbjct: 221 IPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTY 256
>pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate
Aminotransferase From Listeria Innocua Clip11262.
pdb|3FFH|B Chain B, The Crystal Structure Of Histidinol-phosphate
Aminotransferase From Listeria Innocua Clip11262
Length = 363
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 23/185 (12%)
Query: 22 EGEANLWG--NASSDTHLVEFVTAPNNPDGQ-MNKAVLKGPYAKS------IYDHAYFWP 72
+GE +L G NA + + ++ PNNP G + A ++ + + D AY
Sbjct: 140 DGEHDLEGXLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYI-E 198
Query: 73 HFAPIPAPADEELMIF-------TISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMG 125
+ P P ++ + + T SK+ G A +R G+ + E + Q NT
Sbjct: 199 YVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRPPFNTTS 258
Query: 126 VSRECQLRAFKLLKVVLE---DGGNNIFEFGYNTMKKRWENLSKIISLSNRFSLQEIAPQ 182
+ ++ + A K + E N I + Y KR+E + K+ + F L ++ +
Sbjct: 259 IGQKLAIEAIKDQAFIGECRTSNANGIKQ--YEAFAKRFEKV-KLYPANGNFVLIDLGIE 315
Query: 183 YCTYF 187
T F
Sbjct: 316 AGTIF 320
>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|2Z1Z|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With L-malate Ion
pdb|3EI5|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI5|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Glu: An
External Aldimine Mimic
pdb|3EI6|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI6|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
From Arabidopsis Thaliana Complexed With Plp-Dap: An
External Aldimine Mimic
pdb|3EI7|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
pdb|3EI7|B Chain B, Crystal Structure Of Apo-Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana (No Plp)
Length = 432
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 40 FVTAPNNPDG------QMNKAV--LKGPYAKSIYDHAY--FWPHFAP-----IPAPADEE 84
F +PNNP G Q+ + V K + +YD AY + P IP +
Sbjct: 203 FFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVA 262
Query: 85 LMIFTISKLTGHAGSRFGWAVIKDEAVY 112
+ + SK G G R GW VI + +Y
Sbjct: 263 METASFSKYAGFTGVRLGWTVIPKKLLY 290
>pdb|1EI5|A Chain A, Crystal Structure Of A D-Aminopeptidase From Ochrobactrum
Anthropi
Length = 520
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 92 KLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFKLLKVVL 142
+LTGH G+ GW + +R+S N G + E AFKL+ + L
Sbjct: 283 RLTGHGGALRGWRCQRWHCADERLSTIAMFNFEGGASEV---AFKLMNIAL 330
>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
pdb|3EIA|B Chain B, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-Glu: External Aldimine Form
Length = 432
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 40 FVTAPNNPDG------QMNKAV--LKGPYAKSIYDHAY--FWPHFAP-----IPAPADEE 84
F +PNNP G Q+ + V K + +YD AY + P IP +
Sbjct: 203 FFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVA 262
Query: 85 LMIFTISKLTGHAGSRFGWAVIKDEAVY 112
+ + S+ G G R GW VI + +Y
Sbjct: 263 METASFSQYAGFTGVRLGWTVIPKKLLY 290
>pdb|3LY1|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
pdb|3LY1|B Chain B, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
pdb|3LY1|C Chain C, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
pdb|3LY1|D Chain D, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
Length = 354
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 17/84 (20%)
Query: 38 VEFVTAPNNPDGQMNKAVLKGPYAKS-------IYDHAYFW----PHFAPIPAP-----A 81
+ ++ PNNP G + A + P+ S I D AY P F I +P A
Sbjct: 144 IVYLVNPNNPTGTITPADVIEPWIASKPANTXFIVDEAYAEFVNDPRFRSI-SPXITQGA 202
Query: 82 DEELMIFTISKLTGHAGSRFGWAV 105
+ +++ T SK+ AG R G+AV
Sbjct: 203 ENIILLKTFSKIHAXAGXRVGYAV 226
>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI8|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With Ll-Dap: External Aldimine Form
pdb|3EI9|A Chain A, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EI9|B Chain B, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
Aminotransferase From Arabidopsis Thaliana Complexed
With L-glu: External Aldimine Form
pdb|3EIB|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
pdb|3EIB|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
Aminotransferase From Arabidopsis Thaliana
Length = 432
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 40 FVTAPNNPDG------QMNKAV--LKGPYAKSIYDHAY--FWPHFAP-----IPAPADEE 84
F +PNNP G Q+ + V K + +YD AY + P IP +
Sbjct: 203 FFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVA 262
Query: 85 LMIFTISKLTGHAGSRFGWAVIKDEAVY 112
+ + S G G R GW VI + +Y
Sbjct: 263 METASFSNYAGFTGVRLGWTVIPKKLLY 290
>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
pdb|2Z20|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
From Arabidopsis Thaliana
Length = 432
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 40 FVTAPNNPDG------QMNKAV--LKGPYAKSIYDHAY--FWPHFAP-----IPAPADEE 84
F +PNNP G Q+ + V K + +YD AY + P IP +
Sbjct: 203 FFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAXYXSDDNPRSIFEIPGAEEVA 262
Query: 85 LMIFTISKLTGHAGSRFGWAVIKDEAVY 112
+ SK G G R GW VI + +Y
Sbjct: 263 XETASFSKYAGFTGVRLGWTVIPKKLLY 290
>pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
pdb|2DOU|B Chain B, Probable N-Succinyldiaminopimelate Aminotransferase
(Ttha0342) From Thermus Thermophilus Hb8
Length = 376
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 21/124 (16%)
Query: 38 VEFVTAPNNPDGQMNK-----------------AVLKGPYAKSIYDHAYFWPHFAPIPAP 80
V + PNNP G + + PY +Y+ P +P
Sbjct: 161 VLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEA--PSPLALPGA 218
Query: 81 ADEELMIFTISKLTGHAGSRFGWAVIKDEAV--YQRMSAYISLNTMGVSRECQLRAFKLL 138
+ + +F++SK AG R G+A+ +EA+ +R+ I N + A K
Sbjct: 219 KERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTP 278
Query: 139 KVVL 142
K V+
Sbjct: 279 KEVV 282
>pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum
pdb|3CQ4|B Chain B, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum
Length = 376
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 38 VEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPAD------EELM 86
+ FVT PNNP G + + ++ I D AY F+P P+ +L+
Sbjct: 164 IVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAY--AEFSPSPSATTLLEKYPTKLV 221
Query: 87 IF-TISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK 136
+ T+SK AG R G+ V + M + + +S+ + A +
Sbjct: 222 VSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLPYHLSALSQAAAIVALR 272
>pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
pdb|3CQ5|B Chain B, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
pdb|3CQ5|C Chain C, Histidinol-Phosphate Aminotransferase From Corynebacterium
Glutamicum In Complex With Pmp
Length = 369
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 38 VEFVTAPNNPDGQMN-----KAVLKGPYAKSIYDHAYFWPHFAPIPAPAD------EELM 86
+ FVT PNNP G + + ++ I D AY F+P P+ +L+
Sbjct: 167 IVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAY--AEFSPSPSATTLLEKYPTKLV 224
Query: 87 IF-TISKLTGHAGSRFGWAVIKDEAVYQRMSAYISLNTMGVSRECQLRAFK 136
+ T+SK AG R G+ V + M + + +S+ + A +
Sbjct: 225 VSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLPYHLSALSQAAAIVALR 275
>pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
pdb|3QGU|B Chain B, L,L-Diaminopimelate Aminotransferase From Chalmydomonas
Reinhardtii
Length = 449
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 16/83 (19%)
Query: 40 FVTAPNNPDG------QMNKAVLKGPYAKSI--YDHAYFWPHFAP--------IPAPADE 83
F +PNNP G Q+ + V SI YD AY P IP +
Sbjct: 214 FFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEV 273
Query: 84 ELMIFTISKLTGHAGSRFGWAVI 106
+ + SK G G R GW V+
Sbjct: 274 AIETCSFSKYAGFTGVRLGWTVV 296
>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein
Length = 1069
Score = 27.7 bits (60), Expect = 5.8, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 75 APIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAVYQRMSAYIS--LNTMGVSRECQL 132
AP P EE+ + HA +R G K AV + T+ +RE
Sbjct: 618 APSDTPNREEVFEERAANFENHA-ARLGATAEKAAAVGTANKTTVEGIQATVKSARELTP 676
Query: 133 RAFKLLKVVLEDGGNNIFEFGYNTMKKRW-ENLSKIISL 170
+ +++L + GN + TMK +W +N+ K+ L
Sbjct: 677 QVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGL 715
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 15/64 (23%)
Query: 61 AKSIYDHAYFWPHFAP---------IPAPADEELMIFTISK------LTGHAGSRFGWAV 105
A I++H+++W P I E+ F K L GH GS +GW V
Sbjct: 68 AAQIWNHSFYWDSMGPNCGGEPHGEIKEKIQEDFGSFNNFKNEFSNVLCGHFGSGWGWLV 127
Query: 106 IKDE 109
+ +
Sbjct: 128 LNNN 131
>pdb|3HXL|A Chain A, Crystal Structure Of The Sheath Tail Protein (dsy3957)
From Desulfitobacterium Hafniense, Northeast Structural
Genomics Consortium Target Dhr18
Length = 446
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 36 HLVEFVTAPNNPDGQMNKAVLKGPYAKSIYDHAYFWP 72
+ ++ + A N DGQ + V G ++Y AY WP
Sbjct: 388 NTLQDIDAIKNFDGQTDLTVQSGNDVDAVYIEAYAWP 424
>pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|B Chain B, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|C Chain C, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
pdb|2X5D|D Chain D, Crystal Structure Of A Probable Aminotransferase From
Pseudomonas Aeruginosa
Length = 412
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 60 YAKSIYDHAYFWPHFAPIPAPADEELMIFTISKLTGHAGSRFGWAVIKDEAV 111
YA +YD + P +P D + FT+SK AG R G+ V E V
Sbjct: 214 YADIVYD-GWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELV 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,858,905
Number of Sequences: 62578
Number of extensions: 325089
Number of successful extensions: 755
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 733
Number of HSP's gapped (non-prelim): 26
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)