BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024998
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 344 bits (883), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/257 (69%), Positives = 198/257 (77%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KA+EK KRKLRGFIAEK CAPL+LR+AWHSAGT+D KTKTGGPFGT++
Sbjct: 2 KSYPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGTFDSKTKTGGPFGTIKH 61
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AH ANNGLDIAVRLLEP KEQFP +SYAD YQLAGVV VE+TGGP++PFHPGR+DK
Sbjct: 62 QAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDK 121
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGLSD+DIVALSGGHT+ +A E R G +
Sbjct: 122 PEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKE---RSGFE--- 175
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELLTGEKDGLLQLPSDKALL D VFRPLVEK
Sbjct: 176 -GPWTSNPLIFDNSYFT--ELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFA 232
Query: 243 XXXXXHLKLSELGFAEA 259
HLKLSELGFAEA
Sbjct: 233 DYAEAHLKLSELGFAEA 249
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 335 bits (860), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/257 (67%), Positives = 197/257 (76%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KAVEK K+KLRGFIAEK CAPLMLR+AWHSAGT+D TKTGGPFGT++
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKH 73
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 74 PAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 133
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+ +A E R G +
Sbjct: 134 PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---RSGFE--- 187
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELL+GEK+GLLQLPSDKALL DPVFRPLV+K
Sbjct: 188 -GPWTSNPLIFDNSYFT--ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 243 XXXXXHLKLSELGFAEA 259
H KLSELGFA+A
Sbjct: 245 DYAEAHQKLSELGFADA 261
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 335 bits (859), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/257 (67%), Positives = 197/257 (76%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KAVEK K+KLRGFIAEK CAPLMLR+AWHSAGT+D TKTGGPFGT++
Sbjct: 2 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKH 61
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 62 PAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 121
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+ +A E R G +
Sbjct: 122 PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---RSGFE--- 175
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELL+GEK+GLLQLPSDKALL DPVFRPLV+K
Sbjct: 176 -GPWTSNPLIFDNSYFT--ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 243 XXXXXHLKLSELGFAEA 259
H KLSELGFA+A
Sbjct: 233 DYAEAHQKLSELGFADA 249
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/257 (67%), Positives = 197/257 (76%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KAVEK K+KLRGFIAEK CAPLMLR+AWHSAGT+D TKTGGPFGT++
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKH 73
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 74 PAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 133
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+ +A E R G +
Sbjct: 134 PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---RSGFE--- 187
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELL+GEK+GLLQLPSDKALL DPVFRPLV+K
Sbjct: 188 -GPWTSNPLIFDNSYFT--ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 243 XXXXXHLKLSELGFAEA 259
H KLSELGFA+A
Sbjct: 245 DYAEAHQKLSELGFADA 261
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 334 bits (856), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 172/257 (66%), Positives = 197/257 (76%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KAVEK K+KLRGFIAEK CAPLML++AWHSAGT+D TKTGGPFGT++
Sbjct: 2 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLKLAWHSAGTFDKGTKTGGPFGTIKH 61
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 62 PAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 121
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+ +A E R G +
Sbjct: 122 PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---RSGFE--- 175
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELL+GEK+GLLQLPSDKALL DPVFRPLV+K
Sbjct: 176 -GPWTSNPLIFDNSYFT--ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 243 XXXXXHLKLSELGFAEA 259
H KLSELGFA+A
Sbjct: 233 DYAEAHQKLSELGFADA 249
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 334 bits (856), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 172/257 (66%), Positives = 197/257 (76%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KAVEK K+KLRGFIAEK CAPLMLR+AWHSAGT+D TKTGGPFGT++
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTIKH 73
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 74 PAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 133
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+ +A E + G +
Sbjct: 134 PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKEAS---GFE--- 187
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELL+GEK+GLLQLPSDKALL DPVFRPLV+K
Sbjct: 188 -GPWTSNPLIFDNSYFT--ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 243 XXXXXHLKLSELGFAEA 259
H KLSELGFA+A
Sbjct: 245 DYAEAHQKLSELGFADA 261
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 332 bits (852), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/257 (66%), Positives = 196/257 (76%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KAVEK K+KLRGFIAEK CAPLML +AWHSAGT+D TKTGGPFGT++
Sbjct: 2 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLALAWHSAGTFDKGTKTGGPFGTIKH 61
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 62 PAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 121
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+ +A E R G +
Sbjct: 122 PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---RSGFE--- 175
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELL+GEK+GLLQLPSDKALL DPVFRPLV+K
Sbjct: 176 -GPWTSNPLIFDNSYFT--ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 243 XXXXXHLKLSELGFAEA 259
H KLSELGFA+A
Sbjct: 233 DYAEAHQKLSELGFADA 249
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 332 bits (851), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/257 (66%), Positives = 196/257 (76%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KAVEK K+KLRGFIAEK CAPLMLR+AW SAGT+D TKTGGPFGT++
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWASAGTFDKGTKTGGPFGTIKH 73
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 74 PAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 133
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+ +A E R G +
Sbjct: 134 PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---RSGFE--- 187
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELL+GEK+GLLQLPSDKALL DPVFRPLV+K
Sbjct: 188 -GPWTSNPLIFDNSYFT--ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 243 XXXXXHLKLSELGFAEA 259
H KLSELGFA+A
Sbjct: 245 DYAEAHQKLSELGFADA 261
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 330 bits (847), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 172/257 (66%), Positives = 196/257 (76%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KAVEK K+KLRGFIAEK CAPLMLR+A HSAGT+D TKTGGPFGT++
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAHSAGTFDKGTKTGGPFGTIKH 73
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 74 PAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 133
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+ +A E R G +
Sbjct: 134 PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---RSGFE--- 187
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELL+GEK+GLLQLPSDKALL DPVFRPLV+K
Sbjct: 188 -GPWTSNPLIFDNSYFT--ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 243 XXXXXHLKLSELGFAEA 259
H KLSELGFA+A
Sbjct: 245 DYAEAHQKLSELGFADA 261
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 328 bits (841), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/257 (66%), Positives = 196/257 (76%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KAVEK K+KLRGFIAEK CAPLMLR+A +SAGT+D TKTGGPFGT++
Sbjct: 2 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAYSAGTFDKGTKTGGPFGTIKH 61
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 62 PAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 121
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+ +A E R G +
Sbjct: 122 PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---RSGFE--- 175
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELL+GEK+GLLQLPSDKALL DPVFRPLV+K
Sbjct: 176 -GPWTSNPLIFDNSYFT--ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 243 XXXXXHLKLSELGFAEA 259
H KLSELGFA+A
Sbjct: 233 DYAEAHQKLSELGFADA 249
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 327 bits (838), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 171/257 (66%), Positives = 195/257 (75%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KAVEK K+KLRGFIAEK CAPLMLR+A SAGT+D TKTGGPFGT++
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAMSAGTFDKGTKTGGPFGTIKH 73
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 74 PAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 133
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+ +A E R G +
Sbjct: 134 PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---RSGFE--- 187
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELL+GEK+GLLQLPSDKALL DPVFRPLV+K
Sbjct: 188 -GPWTSNPLIFDNSYFT--ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 243 XXXXXHLKLSELGFAEA 259
H KLSELGFA+A
Sbjct: 245 DYAEAHQKLSELGFADA 261
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 326 bits (836), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 171/257 (66%), Positives = 195/257 (75%), Gaps = 9/257 (3%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRL 62
K+YPTVS DY+KAVEK K+KLRGFIAEK CAPLMLR+A SAGT+D TKTGGPFGT++
Sbjct: 14 KSYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAACSAGTFDKGTKTGGPFGTIKH 73
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK 122
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 74 PAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK 133
Query: 123 AEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRD 182
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+ +A E R G +
Sbjct: 134 PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKE---RSGFE--- 187
Query: 183 HGPATLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXX 242
GP T + L S ELL+GEK+GLLQLPSDKALL DPVFRPLV+K
Sbjct: 188 -GPWTSNPLIFDNSYFT--ELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 243 XXXXXHLKLSELGFAEA 259
H KLSELGFA+A
Sbjct: 245 DYAEAHQKLSELGFADA 261
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 133/258 (51%), Gaps = 21/258 (8%)
Query: 16 VEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKT----KTGGPFGTMRLAAEQAHSAN 71
++ + ++ + K C P+M+R+ WH AGTY+ + GG G++R E H AN
Sbjct: 8 LKSAREDIKELLKTKFCHPIMVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELKHGAN 67
Query: 72 NGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP---PQE 128
GL A+ LL+P K+++ ++YADL+QLA +E GGP IP GR D EP P+E
Sbjct: 68 AGLVNALNLLKPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEE 127
Query: 129 GRLPDAKQGN--DHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLE--GATRRGLDLRDHG 184
GRLPDA + HLR VF +MGL+DK+IVALSG HTL ++ + G + G
Sbjct: 128 GRLPDAGPPSPAQHLRDVF-YRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDG 186
Query: 185 PA-------TLSFLTIPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXX 237
P T +L S ++ + LL LP+D AL +DP F+ EK
Sbjct: 187 PGAPGGQSWTAQWLKFDNSYFK--DIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADP 244
Query: 238 XXXXXXXXXXHLKLSELG 255
H KLS LG
Sbjct: 245 EAFFKDYAEAHAKLSNLG 262
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 121/245 (49%), Gaps = 13/245 (5%)
Query: 23 LRGFIAEK-NCAPLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRL 80
+ I+EK P ++R+AWH A +YD K G P +MR E ++ N GLDI +
Sbjct: 16 IEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKGLDIPRKA 75
Query: 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQG 137
LE K+++P ISYADL+ LA V +E GGP IPF GR D + +GRLPD +
Sbjct: 76 LETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 135
Query: 138 NDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDHGPATLSFLT----- 192
H+R+VF ++G +D++ VAL G HT +E + G D SF T
Sbjct: 136 QSHVREVF-RRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDE 194
Query: 193 --IPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXHLK 250
+ ++ +L+ L+ LPSD LL DP +R VE K
Sbjct: 195 DWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKK 254
Query: 251 LSELG 255
L+ELG
Sbjct: 255 LTELG 259
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 123/252 (48%), Gaps = 13/252 (5%)
Query: 16 VEKCKRKLRGFIAEK-NCAPLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNG 73
+ + + I+EK P ++R+AWH A +YD K G P +MR E ++ N G
Sbjct: 9 IRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKG 68
Query: 74 LDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGR 130
LDI + LE K+++P ISYADL+ LA V +E GGP IPF GR D + +GR
Sbjct: 69 LDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGR 128
Query: 131 LPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDHGPATLSF 190
LPD + H+R+VF ++G +D++ VAL G HT +E + G D SF
Sbjct: 129 LPDGSKTQSHVREVF-RRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSF 187
Query: 191 LT-------IPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXX 243
T + ++ +L+ L+ LPSD LL DP +R VE
Sbjct: 188 FTQLLDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKD 247
Query: 244 XXXXHLKLSELG 255
KL+ELG
Sbjct: 248 FANAFKKLTELG 259
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 121/245 (49%), Gaps = 13/245 (5%)
Query: 23 LRGFIAEK-NCAPLMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRL 80
+ I+EK P ++R+AWH A +YD K G P +MR E ++ N GLDI +
Sbjct: 15 IEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKGLDIPRKA 74
Query: 81 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQG 137
LE K+++P ISYADL+ LA V +E GGP IPF GR D + +GRLPD +
Sbjct: 75 LETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 134
Query: 138 NDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDHGPATLSFLT----- 192
H+R+VF ++G +D++ VAL G HT +E + G D SF T
Sbjct: 135 QSHVREVF-RRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDE 193
Query: 193 --IPTSRMCHWELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXHLK 250
+ ++ +L+ L+ LPSD LL DP +R VE K
Sbjct: 194 DWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKK 253
Query: 251 LSELG 255
L+ELG
Sbjct: 254 LTELG 258
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 122/236 (51%), Gaps = 22/236 (9%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAEQAH 68
ED++K K IAEK C P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALK----IAEKKCGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFND 72
Query: 69 SANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE--PP 126
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E P
Sbjct: 73 PSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTP 132
Query: 127 QEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDHGPA 186
GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G G A
Sbjct: 133 DNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEG----PFGAA 187
Query: 187 TLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 188 NNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 243
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 123/237 (51%), Gaps = 17/237 (7%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VALSG HTL L+ + G ++
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALSGAHTLGKTHLKNSGYEGPWTANN 195
Query: 184 GPATLSFLTIPTSRMCHWELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
SF + W+L + K G LQLP+D +L+ DP + +V++
Sbjct: 196 NVFDNSFYLNLLNE--DWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKE 250
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 122/237 (51%), Gaps = 17/237 (7%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G HTL L+ + G ++
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANN 195
Query: 184 GPATLSFLTIPTSRMCHWELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
SF + W+L + K G LQLP+D +L+ DP + +V++
Sbjct: 196 NVFDNSFYLNLLNE--DWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKE 250
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G HTL L+ + G ++
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANN 195
Query: 184 GPATLSFLTIPTSRMCHWELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
SF + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 196 NVFDNSFYLNLLNE--DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 122/238 (51%), Gaps = 19/238 (7%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRG-LDLRD 182
P GRLPDA + D++R F ++ ++D+++VAL G HTL L+ + G D +
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWDATN 195
Query: 183 HGPATLSFLTIPTSRMCHWELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
+ +L + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 196 NVFDNSFYLNLLNE---DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 27/242 (11%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G HTL L+ +
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHTLGKTHLKNSGYE------- 188
Query: 184 GPATLSFLTIPTSRMCH-----WELLTGE--------KDGLLQLPSDKALLDDPVFRPLV 230
GP T + S + W+L + K G + LP+D +L+ DP + +V
Sbjct: 189 GPWTANPNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIV 248
Query: 231 EK 232
++
Sbjct: 249 KE 250
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNCFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMC--HWELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + +W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 16 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 75
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 76 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 135
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 136 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 190
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 191 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 249
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMC--HWELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + +W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMC--HWELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + +W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNAIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 16 EDFQKVYNAIALKLREDDEADNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 75
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 76 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 135
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 136 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEG----PF 190
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 191 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 249
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 134 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEG----PW 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 119/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPWNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 120/239 (50%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AW+++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWYTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 120 bits (302), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G +
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PY 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 120 bits (301), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEKYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 120 bits (301), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PQ 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH++GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + D++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+ +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTXYSLIQDPKYLSIVKE 250
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PQ 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEGYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 23/239 (9%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG------ 186
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 187 GGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 245
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 23/239 (9%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 15 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 74
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 75 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 134
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 135 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG------ 187
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 188 GGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 246
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALKGAHALGKTHLKNSGYEG----PW 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 23/239 (9%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 20 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 79
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 80 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 139
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 140 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG------ 192
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 193 GGANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 251
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNAIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMHLPTDYSLIQDPKYLSIVKE 247
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PF 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GCANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 20 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 79
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 80 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 139
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 140 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 194
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 195 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 253
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYIMLPTDYSLIQDPKYLSIVKE 252
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR +N P ++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYENYIGYGPELVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L +L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTELKNSGYEG----PW 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PG 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PG 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PG 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PG 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 15 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 74
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 75 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 134
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 135 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PG 189
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 190 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 248
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++++AWH +GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVKLAWHISGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP++ +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKE 252
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 20 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 79
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 80 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 139
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 140 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 194
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP++ +L+ DP + +V++
Sbjct: 195 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTEYSLIQDPKYLSIVKE 253
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPD + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDYDKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPD + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDMDKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PG 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP++ +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKE 250
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++ +AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVALAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++ +AWH +GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVLLAWHISGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 20 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 79
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 80 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 139
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 140 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 194
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+ +L+ DP + +V++
Sbjct: 195 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTAYSLIQDPKYLSIVKE 253
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 15 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 74
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 75 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 134
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G L L+ + G
Sbjct: 135 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAGALGKTHLKNSGYEG----PW 189
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 190 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 248
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R E
Sbjct: 14 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 73
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 133
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G L L+ + G
Sbjct: 134 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAGALGKTHLKNSGYEG----PW 188
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 189 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+A+H +GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAFHISGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNCAPL---MLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR +N ++R+AWH +GT+D TGG +G T R E
Sbjct: 17 EDFQKVYNAIALKLREDDEYENYIGYGDDLVRLAWHISGTWDKHDNTGGSYGGTYRFKKE 76
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 77 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 136
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 137 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 191
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 192 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AW +GT+D TGG +G T R E
Sbjct: 19 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWLISGTWDKHDNTGGSYGGTYRFKKE 78
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 79 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 138
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G H L L+ + G
Sbjct: 139 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEG----PW 193
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 194 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 117/239 (48%), Gaps = 21/239 (8%)
Query: 10 EDYKKAVEKCKRKLRGFIAEKNC---APLMLRIAWHSAGTYDVKTKTGGPFG-TMRLAAE 65
ED++K KLR N P+++R+AWH +GT+D TGG +G T R +
Sbjct: 15 EDFQKVYNAIALKLREDDEYDNYIGYGPVLVRLAWHISGTWDKHDNTGGSYGGTYRFKKQ 74
Query: 66 QAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE- 124
+N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR D E
Sbjct: 75 FNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED 134
Query: 125 -PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
P GRLPDA + ++R F ++ ++D+++VAL G L L+ + G
Sbjct: 135 TTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAGALGKTHLKNSGYEG----PW 189
Query: 184 GPATLSFLTIPTSRMCH--WELLTGE--------KDGLLQLPSDKALLDDPVFRPLVEK 232
G A F + + W+L + K G + LP+D +L+ DP + +V++
Sbjct: 190 GAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 248
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 83/203 (40%), Gaps = 53/203 (26%)
Query: 35 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-IS 92
LM+R+ WH+AGTY + GG G R A + N LD A RLL P K+++ +S
Sbjct: 87 LMIRLTWHAAGTYRIADGRGGAGTGNQRFAPLNSWPDNTNLDKARRLLWPIKQKYGNKLS 146
Query: 93 YADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP-------PQEGRLPDAKQGND------ 139
+ADL AG + E G F GR+D P P++ P + N
Sbjct: 147 WADLIAYAGTIAYESMGLKTFGFAFGREDIWHPEKDIYWGPEKEWFPPSTNPNSRYTGDR 206
Query: 140 -------------------------------HLRQVFGAQMGLSDKDIVALS-GGHTL-- 165
H +V A+M ++D++ VAL+ GGHT+
Sbjct: 207 ELENPLAAVTMGLIYVNPEGVDGNPDPLKTAHDVRVTFARMAMNDEETVALTAGGHTVGK 266
Query: 166 ----VSAKLEGATRRGLDLRDHG 184
+A L G G D+ D G
Sbjct: 267 CHGNGNAALLGPEPEGADVEDQG 289
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQFPTIS 92
++ AW SA TY K GG G +RLA ++ N + L + +LE +
Sbjct: 462 LVSTAWDSARTYRNSDKRGGANGARIRLAPQKDWEGNEPDRLPKVLAVLEGISAA-TGAT 520
Query: 93 YADLYQLAGVVGVEV---TGGPDI--PFHPGRDD 121
AD+ LAG VGVE G +I PF PGR D
Sbjct: 521 VADVIVLAGNVGVEQKARAAGVEIVLPFAPGRGD 554
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 35 LMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTIS 92
L +R+AWHSAGTY GG G R A + N LD A RLL P K+++ IS
Sbjct: 105 LFIRMAWHSAGTYRTADGRGGAGEGQQRFAPLNSWPENANLDKARRLLWPIKQKYGRAIS 164
Query: 93 YADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP 125
+ADL L G V +E G F GR D EP
Sbjct: 165 WADLLILTGNVALESMGFKTFGFAGGRADTWEP 197
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNGLDIAVRL--LEPFKEQF---- 88
++ AW +A T+ K GG G +RLA ++ AN +A L LE + F
Sbjct: 480 LVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQ 539
Query: 89 ---PTISYADLYQLAGVVGVEVTG-----GPDIPFHPGRDDKAE 124
+S ADL LAG GVE +PF PGR D ++
Sbjct: 540 RGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 11 DYKKAVEK-----CKRKLRGFIA-EKNCAP--------LMLRIAWHSAGTYDVKTKTGGP 56
+Y +A EK KR L + ++ P L +R+AWHSAGTY GG
Sbjct: 33 NYAQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGA 92
Query: 57 F-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIP 114
G R A + N LD A RLL P K+++ IS+ADL L G V +E G
Sbjct: 93 GEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFG 152
Query: 115 FHPGRDDKAEP 125
F GR D EP
Sbjct: 153 FAGGRADTWEP 163
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNGLDIAVRL--LEPFKEQF---- 88
++ AW +A T+ K GG G +RLA ++ AN +A L LE + F
Sbjct: 446 LVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQ 505
Query: 89 ---PTISYADLYQLAGVVGVEVTG-----GPDIPFHPGRDDKAE 124
+S ADL LAG GVE +PF PGR D ++
Sbjct: 506 RGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 549
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 11 DYKKAVEK-----CKRKLRGFIA-EKNCAP--------LMLRIAWHSAGTYDVKTKTGGP 56
+Y +A EK KR L + ++ P L +R+AWHSAGTY GG
Sbjct: 67 NYAQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGA 126
Query: 57 F-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIP 114
G R A + N LD A RLL P K+++ IS+ADL L G V +E G
Sbjct: 127 GEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFG 186
Query: 115 FHPGRDDKAEP 125
F GR D EP
Sbjct: 187 FAGGRADTWEP 197
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNGLDIAVRL--LEPFKEQF---- 88
++ AW +A T+ K GG G +RLA ++ AN +A L LE + F
Sbjct: 480 LVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQ 539
Query: 89 ---PTISYADLYQLAGVVGVEVTG-----GPDIPFHPGRDDKAE 124
+S ADL LAG GVE +PF PGR D ++
Sbjct: 540 RGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 11 DYKKAVEK-----CKRKLRGFIA-EKNCAP--------LMLRIAWHSAGTYDVKTKTGGP 56
+Y +A EK KR L + ++ P L +R+AWHSAGTY GG
Sbjct: 67 NYAQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGA 126
Query: 57 F-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIP 114
G R A + N LD A RLL P K+++ IS+ADL L G V +E G
Sbjct: 127 GEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFG 186
Query: 115 FHPGRDDKAEP 125
F GR D EP
Sbjct: 187 FAGGRADTWEP 197
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNGLDIAVRL--LEPFKEQF---- 88
++ AW +A T+ K GG G +RLA ++ AN +A L LE + F
Sbjct: 480 LVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQ 539
Query: 89 ---PTISYADLYQLAGVVGVEVTG-----GPDIPFHPGRDDKAE 124
+S ADL LAG GVE +PF PGR D ++
Sbjct: 540 RGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 11 DYKKAVEK-----CKRKLRGFIA-EKNCAP--------LMLRIAWHSAGTYDVKTKTGGP 56
+Y +A EK KR L + ++ P L +R+AWHSAGTY GG
Sbjct: 67 NYAQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGA 126
Query: 57 F-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIP 114
G R A + N LD A RLL P K+++ IS+ADL L G V +E G
Sbjct: 127 GEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFG 186
Query: 115 FHPGRDDKAEP 125
F GR D EP
Sbjct: 187 FAGGRADTWEP 197
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNGLDIAVRL--LEPFKEQF---- 88
++ AW +A T+ K GG G +RLA ++ AN +A L LE + F
Sbjct: 480 LVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQ 539
Query: 89 ---PTISYADLYQLAGVVGVEVTG-----GPDIPFHPGRDDKAE 124
+S ADL LAG GVE +PF PGR D ++
Sbjct: 540 RGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 11 DYKKAVEK-----CKRKLRGFIA-EKNCAP--------LMLRIAWHSAGTYDVKTKTGGP 56
+Y +A EK KR L + ++ P L +R+AWHSAGTY GG
Sbjct: 67 NYAQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAWHSAGTYRTADGRGGA 126
Query: 57 F-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIP 114
G R A + N LD A RLL P K+++ IS+ADL L G V +E G
Sbjct: 127 GEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFG 186
Query: 115 FHPGRDDKAEP 125
F GR D EP
Sbjct: 187 FAGGRADTWEP 197
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNGLDIAVRL--LEPFKEQF---- 88
++ AW +A T+ K GG G +RLA ++ AN +A L LE + F
Sbjct: 480 LVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQ 539
Query: 89 ---PTISYADLYQLAGVVGVEVTG-----GPDIPFHPGRDDKAE 124
+S ADL LAG GVE +PF PGR D ++
Sbjct: 540 RGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 36 MLRIAWHSAGTYDVKT---KTGGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPT 90
++R+ +H A GG G+M L E SANNG+D +V L PF ++ T
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGIDDSVNNLIPFMQKHNT 99
Query: 91 ISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQM 149
IS ADL Q AG V + G P + F GR +K +G +P+ + + Q F
Sbjct: 100 ISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFEDAG 159
Query: 150 GLSDKDIVALSGGHTLVSAK 169
G + ++V+L H++ A
Sbjct: 160 GFTPFEVVSLLASHSVARAN 179
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 36 MLRIAWHSAGTYDVKT---KTGGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPT 90
++R+ +H A GG G+M L E SANNG+D +V L PF ++ T
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGIDDSVNNLIPFMQKHNT 99
Query: 91 ISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQM 149
IS ADL Q AG V + G P + F GR +K +G +P+ + + Q F
Sbjct: 100 ISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFEDAG 159
Query: 150 GLSDKDIVALSGGHTLVSAK 169
G + ++V+L H++ A
Sbjct: 160 GFTPFEVVSLLASHSVARAN 179
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 36 MLRIAWHSAGTYDVKT---KTGGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPT 90
++R+ +H A GG G+M L E SANNG+D +V L PF ++ T
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGIDDSVNNLIPFMQKHNT 99
Query: 91 ISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQM 149
IS ADL Q AG V + G P + F GR +K +G +P+ + + Q F
Sbjct: 100 ISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFEDAG 159
Query: 150 GLSDKDIVALSGGHTLVSA 168
G + ++V+L H++ A
Sbjct: 160 GFTPFEVVSLLASHSVARA 178
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 28 AEKNCAPLMLRIAWHSAGTYDVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQ 87
A+ P +L++A + A TYD TK+GG G++R ++E + + N GL + L+E K++
Sbjct: 27 AKPELVPSLLKLALNDAXTYDKATKSGGANGSIRFSSELSRAENEGLSDGLSLIEEVKKE 86
Query: 88 FPT------ISYADLYQLAGVVGVEVT 108
+ ISYAD+ QLAG V+ T
Sbjct: 87 IDSISKGGPISYADIIQLAGQSAVKFT 113
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 34 PLMLRIAWHSAGTY-DVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTI 91
PL +R+AWHSAGTY + G G R A + N LD A RLL P K+++ I
Sbjct: 88 PLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKI 147
Query: 92 SYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP-----------------------QE 128
S+ADL LAG V +E G + GR+D E QE
Sbjct: 148 SWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQE 207
Query: 129 GR-----------------LPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLVSAKL 170
G PD + ++RQ F +M ++DK+ AL +GGHT K+
Sbjct: 208 GLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFD-RMAMNDKETAALIAGGHTF--GKV 264
Query: 171 EGA 173
GA
Sbjct: 265 HGA 267
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQF---- 88
+++ AW SA TY K GG G +RL ++ N L+ + LE + +F
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 89 ---PTISYADLYQLAG---------VVGVEVTGGPDIPFHPGRDD 121
+S ADL L G G +V +IPF PGR D
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDV----EIPFEPGRVD 563
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 34 PLMLRIAWHSAGTY-DVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTI 91
PL +R+AWHSAGTY + G G R A + N LD A RLL P K+++ I
Sbjct: 88 PLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKI 147
Query: 92 SYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP-----------------------QE 128
S+ADL LAG V +E G + GR+D E QE
Sbjct: 148 SWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQE 207
Query: 129 GR-----------------LPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLVSAKL 170
G PD + ++RQ F +M ++DK+ AL +GGHT K+
Sbjct: 208 GLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFD-RMAMNDKETAALIAGGHTF--GKV 264
Query: 171 EGA 173
GA
Sbjct: 265 HGA 267
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQF---- 88
+++ AW SA TY K GG G +RL ++ N L+ + LE + +F
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 89 ---PTISYADLYQLAG---------VVGVEVTGGPDIPFHPGRDD 121
+S ADL L G G +V +IPF PGR D
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDV----EIPFEPGRVD 563
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 34 PLMLRIAWHSAGTY-DVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTI 91
PL +R+AWHSAGTY + G G R A + N LD A RLL P K+++ I
Sbjct: 88 PLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKI 147
Query: 92 SYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP-----------------------QE 128
S+ADL LAG V +E G + GR+D E QE
Sbjct: 148 SWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQE 207
Query: 129 GR-----------------LPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLVSAKL 170
G PD + ++RQ F +M ++DK+ AL +GGHT K+
Sbjct: 208 GLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFD-RMAMNDKETAALIAGGHTF--GKV 264
Query: 171 EGA 173
GA
Sbjct: 265 HGA 267
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQF---- 88
+++ AW SA TY K GG G +RL ++ N L+ + LE + +F
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 89 ---PTISYADLYQLAG---------VVGVEVTGGPDIPFHPGRDD 121
+S ADL L G G +V +IPF PGR D
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDV----EIPFEPGRVD 563
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 79/183 (43%), Gaps = 46/183 (25%)
Query: 34 PLMLRIAWHSAGTY-DVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTI 91
PL +R+AWHSAGTY + G G R A + N LD A RLL P K+++ I
Sbjct: 88 PLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKI 147
Query: 92 SYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP-----------------------QE 128
S+ADL LAG V +E G + GR+D E QE
Sbjct: 148 SWADLMILAGNVAIESMGFKTFGYAGGREDAFEEDKAVNWGPEDEFETQERFDEPGEIQE 207
Query: 129 GR-----------------LPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLVSAKL 170
G PD + ++RQ F +M ++DK+ AL +GGHT K+
Sbjct: 208 GLGASVMGLIYVNPEGPDGNPDPEASAKNIRQTFD-RMAMNDKETAALIAGGHTF--GKV 264
Query: 171 EGA 173
GA
Sbjct: 265 HGA 267
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQF---- 88
+++ AW SA TY K GG G +RL ++ N L+ + LE + +F
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 89 ---PTISYADLYQLAG---------VVGVEVTGGPDIPFHPGRDD 121
+S ADL L G G +V +IPF PGR D
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDV----EIPFEPGRVD 563
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 35 LMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTIS 92
L +R+A HSAGTY GG G R A + N LD A RLL P K+++ IS
Sbjct: 105 LFIRMAXHSAGTYRTADGRGGAGEGQQRFAPLNSWPENANLDKARRLLWPIKQKYGRAIS 164
Query: 93 YADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP 125
+ADL L G V +E G F GR D EP
Sbjct: 165 WADLLILTGNVALESMGFKTFGFAGGRADTWEP 197
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNGLDIAVRL--LEPFKEQF---- 88
++ AW +A T+ K GG G +RLA ++ AN +A L LE + F
Sbjct: 480 LVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQ 539
Query: 89 ---PTISYADLYQLAGVVGVEVTG-----GPDIPFHPGRDDKAE 124
+S ADL LAG GVE +PF PGR D ++
Sbjct: 540 RGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 34 PLMLRIAWHSAGTY-DVKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTI 91
PL +R+AWHSAGTY + G G R A + N LD A RLL P K+++ I
Sbjct: 88 PLFIRMAWHSAGTYRTADGRGGAAGGRQRFAPINSWPDNANLDKARRLLLPIKQKYGQKI 147
Query: 92 SYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE 124
S+ADL LAG V +E G + GR+D E
Sbjct: 148 SWADLMILAGNVAIESMGFKTFGYAGGREDAFE 180
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSAN--NGLDIAVRLLEPFKEQF---- 88
+++ AW SA TY K GG G +RL ++ N L+ + LE + +F
Sbjct: 463 LVKTAWASASTYRDSDKRGGANGARLRLEPQKNWEVNEPEQLETVLGTLENIQTEFNDSR 522
Query: 89 ---PTISYADLYQLAG---------VVGVEVTGGPDIPFHPGRDD 121
+S ADL L G G +V +IPF PGR D
Sbjct: 523 SDGTQVSLADLIVLGGNAAVEQAAANAGYDV----EIPFEPGRVD 563
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 11 DYKKAVEK-----CKRKLRGFIA-EKNCAP--------LMLRIAWHSAGTYDVKTKTGGP 56
+Y +A EK KR L + ++ P L +R+A HSAGTY GG
Sbjct: 67 NYAQAFEKLDLAAVKRDLHALMTTSQDWWPADFGHYGGLFIRMAXHSAGTYRTADGRGGA 126
Query: 57 F-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIP 114
G R A + N LD A RLL P K+++ IS+ADL L G V +E G
Sbjct: 127 GEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFG 186
Query: 115 FHPGRDDKAEP 125
F GR D EP
Sbjct: 187 FAGGRADTWEP 197
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNGLDIAVRL--LEPFKEQF---- 88
++ AW +A T+ K GG G +RLA ++ AN +A L LE + F
Sbjct: 480 LVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQ 539
Query: 89 ---PTISYADLYQLAGVVGVEVTG-----GPDIPFHPGRDDKAE 124
+S ADL LAG GVE +PF PGR D ++
Sbjct: 540 RGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 35 LMLRIAWHSAGTYDVKTKTGGPF-GTMRLAAEQAHSANNGLDIAVRLLEPFKEQF-PTIS 92
L +R+A HSAGTY GG G R A + N LD A RLL P K+++ IS
Sbjct: 105 LFIRMAXHSAGTYRTADGRGGAGEGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGRAIS 164
Query: 93 YADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP 125
+ADL L G V +E G F GR D EP
Sbjct: 165 WADLLILTGNVALESMGFKTFGFAGGRADTWEP 197
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNGLDIAVRL--LEPFKEQF---- 88
++ AW +A T+ K GG G +RLA ++ AN +A L LE + F
Sbjct: 480 LVSTAWAAASTFRGSDKRGGANGARIRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQ 539
Query: 89 ---PTISYADLYQLAGVVGVEVTG-----GPDIPFHPGRDDKAE 124
+S ADL LAG GVE +PF PGR D ++
Sbjct: 540 RGGKQVSLADLIVLAGCAGVEQAAKNAGHAVTVPFAPGRADASQ 583
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 34 PLMLRIAWHSAGTYDVKTKTGGPFGTM-RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTI 91
PL +R+AWH+AGTY + GG G M R A + N LD A RLL P K+++ +
Sbjct: 103 PLFIRMAWHAAGTYRIHDGRGGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKKL 162
Query: 92 SYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP 125
S+ADL AG +E G F GR D+ EP
Sbjct: 163 SWADLIVFAGNCALESMGFKTFGFGFGRVDQWEP 196
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 34 PLMLRIAWHSAGTYDVKTKTGGPFGTM-RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTI 91
PL +R+AWH+AGTY + GG G M R A + N LD A RLL P K+++ +
Sbjct: 100 PLFIRMAWHAAGTYRIHDGRGGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKKL 159
Query: 92 SYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP 125
S+ADL AG +E G F GR D+ EP
Sbjct: 160 SWADLIVFAGNCALESMGFKTFGFGFGRVDQWEP 193
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 34 PLMLRIAWHSAGTYDVKTKTGGPFGTM-RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTI 91
PL +R+AWH+AGTY + GG G M R A + N LD A RLL P K+++ +
Sbjct: 100 PLFIRMAWHAAGTYRIHDGRGGAGGGMQRFAPLNSWPDNASLDKARRLLWPVKKKYGKKL 159
Query: 92 SYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP 125
S+ADL AG +E G F GR D+ EP
Sbjct: 160 SWADLIVFAGNCALESMGFKTFGFGFGRVDQWEP 193
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 37 LRIAWHSAGTYDVKTKTGGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPTISYA 94
LR+ +H A + GG G++ E AN G+D V +PF + IS
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 95 DLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSD 153
D Q AG VGV GG IPF GR D + +P+ + D + G G S
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEPQDSVDSILARMG-DAGFSP 159
Query: 154 KDIVALSGGHTLVSA 168
++V L H++ +A
Sbjct: 160 VEVVWLLASHSIAAA 174
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 37 LRIAWHSAGTYDVKTKTGGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPTISYA 94
LR+ +H A + GG G++ E AN G+D V +PF + IS
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKH-NISAG 100
Query: 95 DLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSD 153
D Q AG VGV GG IPF GR D + +P+ D + G G S
Sbjct: 101 DFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHLVPEGFDSVDSILARMG-DAGFSP 159
Query: 154 KDIVALSGGHTLVSA 168
++V L H++ +A
Sbjct: 160 VEVVWLLASHSIAAA 174
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 67/170 (39%), Gaps = 14/170 (8%)
Query: 65 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKA 123
E A N GL+ PF +S+ D Q AG VG GGP + F GR + +
Sbjct: 79 ETAFIPNFGLEFTTEGFIPFALAH-GVSFGDFVQFAGAVGAANCAGGPRLQFLAGRSNIS 137
Query: 124 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDH 183
+P +G +PD D + A +G S ++V L H+ ++A+ E T D
Sbjct: 138 QPSPDGLVPDPTDSADKILARM-ADIGFSPTEVVHLLASHS-IAAQYEVDTDVAGSPFDS 195
Query: 184 GPATLSFLTIPTSRMCHWELLTGEKD---------GLLQLPSDKALLDDP 224
P+ + H TG G +L SD AL DP
Sbjct: 196 TPSVFD-TQFFVESLLHGTQFTGSGQGGEVMSPIPGEFRLQSDFALSRDP 244
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 63 AAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDD 121
A A+SA G ++ + + P +S D+ LA V ++GGP GR D
Sbjct: 69 AGPNANSAR-GFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDLGRRD 127
Query: 122 KAEPPQEG---RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTL 165
Q G +P QG ++ F A +GL+ D+VALSG HT
Sbjct: 128 TLTANQAGANSSIPSPTQGLSNITSKFSA-VGLNTNDLVALSGAHTF 173
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 31 NCAPLMLRIAWHSAGTYD-VKTKTGGPFGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP 89
N L +R+A HSAGTY + + GG G R A + N LD A RL+ P K+++
Sbjct: 108 NYGGLFVRMAXHSAGTYRAMDGRGGGGMGQQRFAPLNSWPDNQNLDKARRLIWPIKQKYG 167
Query: 90 T-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDD 121
IS+ADL L G V +E G + F GR D
Sbjct: 168 NKISWADLMLLTGNVALENMGFKTLGFGGGRAD 200
>pdb|1U2K|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase- Peroxidase Katg Of Escherichia Coli (I41)
pdb|1U2L|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
pdb|1U2L|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
Length = 309
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYA 94
++ +AW SA T+ K GG G + L ++ N A+ +LE +++ S A
Sbjct: 50 LVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKASLA 109
Query: 95 DLYQLAGVVGVEVTGGP-----DIPFHPGRDD 121
D+ LAGVVGVE +PF PGR D
Sbjct: 110 DIIVLAGVVGVEKAASAAGLSIHVPFAPGRVD 141
>pdb|1U2J|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|C Chain C, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|D Chain D, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|E Chain E, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|F Chain F, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|G Chain G, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|H Chain H, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
Length = 326
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 36 MLRIAWHSAGTYDVKTKTGGPFGT-MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYA 94
++ +AW SA T+ K GG G + L ++ N A+ +LE +++ S A
Sbjct: 67 LVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVRALPVLEKIQKESGKASLA 126
Query: 95 DLYQLAGVVGVEVTGGP-----DIPFHPGRDD 121
D+ LAGVVGVE +PF PGR D
Sbjct: 127 DIIVLAGVVGVEKAASAAGLSIHVPFAPGRVD 158
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Query: 73 GLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ---E 128
GLD+ + + P T+S AD+ +A + + GGP P GR D +
Sbjct: 76 GLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLAN 135
Query: 129 GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDHG 184
LP L+ F Q GL+ D+V LSGGHT A+ R + + G
Sbjct: 136 QNLPAPFFNLTQLKASFAVQ-GLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTG 190
>pdb|1B80|A Chain A, Rec. Lignin Peroxidase H8 Oxidatively Processed
pdb|1B80|B Chain B, Rec. Lignin Peroxidase H8 Oxidatively Processed
Length = 351
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 65 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKA 123
E A N GLD V+L +PF ++ ++ D AG V + G P + F GR
Sbjct: 85 ETAFHPNIGLDEIVKLQKPFVQKH-GVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPAT 143
Query: 124 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGL 178
+P +G +P+ D + + ++V + H++ + T +GL
Sbjct: 144 QPAPDGLVPEPFHTVDQIINRVNDAGEFDELELVXMLSAHSVAAVNDVDPTVQGL 198
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 90 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDD--KAEPPQEGRLPDAKQGNDHLRQVFGA 147
+S AD+ LA V ++GGP GR D A LP + D + F A
Sbjct: 91 VVSCADILTLAARDSVVLSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVA 150
Query: 148 QMGLSDKDIVALSGGHTLVSAKLEGATRRGLDLRDHG 184
+ L+ D+VALSG HT AK + R + G
Sbjct: 151 -VNLNITDVVALSGAHTFGQAKCAVFSNRLFNFTGAG 186
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 73 GLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG-- 129
G ++ + + P +S +D+ LA V + GGP GR D G
Sbjct: 77 GFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAGAN 136
Query: 130 -RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAK 169
+P + ++ F A +GL+ D+VALSG HT A+
Sbjct: 137 SSIPSPIESLSNITFKFSA-VGLNTNDLVALSGAHTFGRAR 176
>pdb|1B82|A Chain A, Pristine Recomb. Lignin Peroxidase H8
pdb|1B82|B Chain B, Pristine Recomb. Lignin Peroxidase H8
Length = 351
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 65 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKA 123
E A N GLD V+L +PF ++ ++ D AG V + G P + F GR
Sbjct: 85 ETAFHPNIGLDEIVKLQKPFVQKH-GVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPAT 143
Query: 124 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGL 178
+P +G +P+ D + + ++V + H++ + T +GL
Sbjct: 144 QPAPDGLVPEPFHTVDQIINRVNDAGEFDELELVWMLSAHSVAAVNDVDPTVQGL 198
>pdb|1B85|A Chain A, Lignin Peroxidase
pdb|1B85|B Chain B, Lignin Peroxidase
Length = 351
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 65 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKA 123
E A N GLD V+L +PF ++ ++ D AG V + G P + F GR
Sbjct: 85 ETAFHPNIGLDEIVKLQKPFVQKH-GVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPAT 143
Query: 124 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLVSAKLEGATRRGL 178
+P +G +P+ D + + ++V + H++ + T +GL
Sbjct: 144 QPAPDGLVPEPFHTVDQIINRVNDAGEFDELELVFMLSAHSVAAVNDVDPTVQGL 198
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 56/140 (40%), Gaps = 21/140 (15%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 62 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 116 HPGRDDKAE----------PPQEGRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHT 164
GR D + P LP K D R V GL+ D+VALSGGHT
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLK---DSFRNV-----GLNRSSDLVALSGGHT 172
Query: 165 LVSAKLEGATRRGLDLRDHG 184
+ R + + G
Sbjct: 173 FGKNQCRSIMDRLYNFSNTG 192
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 62 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 116 HPGRDDKAE----------PPQEGRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHT 164
GR D + P LP K D R V GL+ D+VALSGGHT
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLK---DSFRNV-----GLNRSSDLVALSGGHT 172
Query: 165 L 165
Sbjct: 173 F 173
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 62 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 116 HPGRDDKAE----------PPQEGRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHT 164
GR D + P LP K D R V GL+ D+VALSGGHT
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLK---DSFRNV-----GLNRSSDLVALSGGHT 172
Query: 165 L 165
Sbjct: 173 F 173
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 61 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 116 HPGRDDKAE----------PPQEGRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHT 164
GR D + P LP K D R V GL+ D+VALSGGHT
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLK---DSFRNV-----GLNRSSDLVALSGGHT 171
Query: 165 L 165
Sbjct: 172 F 172
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 62 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 116 HPGRDD---------KAEPPQE-GRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHT 164
GR D A PQ LP K D R V GL+ D+VALSGGHT
Sbjct: 121 PLGRRDSLQAFLDLANANLPQPFFTLPQLK---DSFRNV-----GLNRSSDLVALSGGHT 172
Query: 165 L 165
Sbjct: 173 F 173
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 62 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 116 HPGRDDKAE----------PPQEGRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHT 164
GR D + P LP K D R V GL+ D+VALSGGHT
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLK---DSFRNV-----GLNRSSDLVALSGGHT 172
Query: 165 L 165
Sbjct: 173 F 173
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 61 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 116 HPGRDDKAE----------PPQEGRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHT 164
GR D + P LP K D R V GL+ D+VALSGGHT
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLK---DSFRNV-----GLNRSSDLVALSGGHT 171
Query: 165 L 165
Sbjct: 172 F 172
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 61 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 116 HPGRDDKAE----------PPQEGRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHT 164
GR D + P LP K D R V GL+ D+VALSGGHT
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLK---DSFRNV-----GLNRSSDLVALSGGHT 171
Query: 165 L 165
Sbjct: 172 F 172
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 61 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 116 HPGRDDKAE----------PPQEGRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHT 164
GR D + P LP K D R V GL+ D+VALSGGHT
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLK---DSFRNV-----GLNRSSDLVALSGGHT 171
Query: 165 L 165
Sbjct: 172 F 172
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 62 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 116 HPGRDDK-------AEPPQEGRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHTL 165
GR D A G Q D R V GL+ D+VALSGGHT
Sbjct: 121 PLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNV-----GLNRSSDLVALSGGHTF 173
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 61 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 116 HPGRDDKAE----------PPQEGRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHT 164
GR D + P LP K D R V GL+ D+VALSGGH+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLK---DSFRNV-----GLNRSSDLVALSGGHS 171
Query: 165 L 165
Sbjct: 172 F 172
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 50/121 (41%), Gaps = 21/121 (17%)
Query: 57 FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPF 115
F T + A A+SA G + R+ + P T+S ADL +A V + GGP
Sbjct: 61 FRTEKDAFGNANSAR-GFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 116 HPGRDDKAE----------PPQEGRLPDAKQGNDHLRQVFGAQMGLS-DKDIVALSGGHT 164
GR D + P LP K D R V GL+ D+VAL GGHT
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLK---DSFRNV-----GLNRSSDLVALYGGHT 171
Query: 165 L 165
Sbjct: 172 F 172
>pdb|1WDZ|A Chain A, Crystal Structure Of Rcb Domain Of Irsp53
pdb|1WDZ|B Chain B, Crystal Structure Of Rcb Domain Of Irsp53
Length = 242
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAG 45
+NY VS+ YK A+ + +R+ F+ EK CA A+HS G
Sbjct: 179 ENY--VSDGYKTALTEERRRF-CFLVEKQCAVAKNSAAYHSKG 218
>pdb|4INF|A Chain A, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 With Bound Calcium
pdb|4INF|B Chain B, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 With Bound Calcium
pdb|4INF|C Chain C, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 With Bound Calcium
pdb|4INF|D Chain D, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 With Bound Calcium
pdb|4ING|A Chain A, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 Complexed With Calcium And
4-hydroxy-3-methoxy-5-nitrobenzoic Acid
pdb|4ING|B Chain B, Crystal Structure Of Amidohydrolase Saro_0799 (target
Efi-505250) From Novosphingobium Aromaticivorans Dsm
12444 Complexed With Calcium And
4-hydroxy-3-methoxy-5-nitrobenzoic Acid
Length = 373
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 52 KTGGPFGTMRLAAEQAHSANNGLDIAVRLL 81
KTGG G +R+A E+A + +D+ +R++
Sbjct: 28 KTGGEQGYLRIATEEAFATREIIDVYLRMI 57
>pdb|2YKT|A Chain A, Crystal Structure Of The I-Bar Domain Of Irsp53 (Baiap2)
In Complex With An Ehec Derived Tir Peptide
Length = 253
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAG 45
+NY VS+ YK A+ + +R+ F+ EK CA A+HS G
Sbjct: 179 ENY--VSDGYKTALTEERRRF-CFLVEKQCAVAKNSAAYHSKG 218
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 90 TISYADLYQLAGVVGVEVTGGPDIPFHPGR-DDKAEPPQEGRLPD--AKQGNDHLRQVFG 146
+S +D+ LA V V+GGPD GR D ++ + L D N
Sbjct: 103 VVSCSDILALAARDSVVVSGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALL 162
Query: 147 AQMGLSDKDIVALSGGHTL 165
++GL D+V +SGGHT+
Sbjct: 163 GRLGLDATDLVTISGGHTI 181
>pdb|1Y2O|A Chain A, Structure Of N-Terminal Domain Irsp53BAIAP2
pdb|1Y2O|B Chain B, Structure Of N-Terminal Domain Irsp53BAIAP2
Length = 250
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 KNYPTVSEDYKKAVEKCKRKLRGFIAEKNCAPLMLRIAWHSAG 45
+NY VS+ YK A+ + +R+ F+ EK CA A+HS G
Sbjct: 176 ENY--VSDGYKTALTEERRRF-CFLVEKQCAVAKNSAAYHSKG 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,870,173
Number of Sequences: 62578
Number of extensions: 338580
Number of successful extensions: 1309
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 163
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)