RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 024999
(259 letters)
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 160 bits (406), Expect = 1e-46
Identities = 58/147 (39%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 114 ELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIA 173
EL +L R + NP L A VT E A QAK AD+ A+ K GPLHG+P LKD I
Sbjct: 1 ELVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRAR-KEKGPLHGVPISLKDNID 59
Query: 174 VPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFG---GRTRN 230
V TT GS + +A V +RL++AGAV++ K A G TRN
Sbjct: 60 VKGVPTTAGSKALEGYPPPYDATVVERLRAAGAVILGKTNMDEFAMGSTTENSAFGPTRN 119
Query: 231 PWNIEEFSTGSSAGPAACTSAGILLFS 257
PW++ GSS G AA +AG++ +
Sbjct: 120 PWDLSRTPGGSSGGSAAAVAAGLVPLA 146
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 154 bits (392), Expect = 3e-44
Identities = 64/177 (36%), Positives = 95/177 (53%), Gaps = 17/177 (9%)
Query: 92 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDE--LAYQQAKEAD 149
+ ++ EL AL+R K++++ EL +L R++ NP L A V E LA +A AD
Sbjct: 3 ALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAAD 62
Query: 150 ELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLV 209
LA G+ LGPL G+P +KD I TT GS ++ V +A V +RL++AGAV++
Sbjct: 63 ARLAAGEPLGPLAGVPIAVKDNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAVIL 122
Query: 210 AKL---------VSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 257
K + + A+ G TRNPWN+E GSS G AA +AG++ +
Sbjct: 123 GKTNMDEFAMGSSTENSAF------GPTRNPWNLERVPGGSSGGSAAAVAAGLVPLA 173
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 119 bits (302), Expect = 2e-31
Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 16/162 (9%)
Query: 105 IRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGI 164
++ K+I++ ELT+ +L R++ +P L A +T T+E A QAK AD LA G+ GPL GI
Sbjct: 1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGI 59
Query: 165 PYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL-----VSGSL-- 217
P +KD I +TT S +N V +A V ++LK+AGAV++ K GS
Sbjct: 60 PIAIKDNICTKGIRTTCASKILENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTE 119
Query: 218 --AYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 257
A+ G T+NPW++E GSS G AA +AG+ +
Sbjct: 120 NSAF------GPTKNPWDLERVPGGSSGGSAAAVAAGLAPAA 155
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 118 bits (299), Expect = 8e-31
Identities = 59/176 (33%), Positives = 94/176 (53%), Gaps = 8/176 (4%)
Query: 85 QKPENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTD-ELAYQ 143
+ I +S L IR +Q++ E+ R +L ++R NPA+ A+V D +
Sbjct: 1 PASPPPDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLA 60
Query: 144 QAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKS 203
+A E D LA+G+Y G LHG+P KD+ +TT GS F +QV +A V +R+++
Sbjct: 61 EAAEKDAALARGEYRGWLHGMPQAPKDLAPTKGIRTTLGSPIFADQVPQEDAIVVERMRA 120
Query: 204 AGAVLVAKLVS-----GSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGIL 254
AGA+ + K + GS Y+ ++ G TRNP++ + GSS G AA + +L
Sbjct: 121 AGAIFIGKTNTPEFGLGSHTYNPVY--GATRNPYDPSRSAGGSSGGAAAALALRML 174
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 116 bits (292), Expect = 7e-30
Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
Query: 92 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADEL 151
+ +F+ EL A + +++S ELT + + R++R++ + A+V + A A+ AD
Sbjct: 8 EWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAA 67
Query: 152 LAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAK 211
A+G+ GPL GIP +K+ V TTWG ++ V +A RLK+AGAV++ K
Sbjct: 68 RARGE-RGPLLGIPVTVKESFNVAGLPTTWGFPDLRDYVPAEDAVAVARLKAAGAVILGK 126
Query: 212 L-VSGSL----AYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSY 258
V L +Y++I+ G T NPW++ GSS G AA +AG S
Sbjct: 127 TNVPLGLQDWQSYNEIY--GTTNNPWDLARTPGGSSGGSAAALAAGFGALSI 176
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 110 bits (276), Expect = 1e-27
Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 7/163 (4%)
Query: 96 MSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQG 155
+S EL A +R++ +++ E L RL NPA+ AVV + E A QA D A+G
Sbjct: 8 LSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARG 67
Query: 156 KYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSG 215
GPL G+P +K + + TT G K+ + ++ V L+ AGAV++ + +
Sbjct: 68 DDPGPLAGVPVTVKVNVDQAGFATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTP 127
Query: 216 SLAYDDIWFG-----GRTRNPWNIEEFSTGSSAGPAACTSAGI 253
+ +Y WF GRT NPW+ GSS G AA +AGI
Sbjct: 128 AFSYR--WFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGI 168
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 99.7 bits (249), Expect = 5e-24
Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 92 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADEL 151
+++ +S E+ A +R ++++ + + L R+ R NP L A T E A +A D
Sbjct: 3 NLSSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAA 62
Query: 152 LAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNT-EAWVYKRLKSAGAVLVA 210
A G+ LGPL G+P+ +K++ V T GS +++ T +A +RL++AGAVLV
Sbjct: 63 RAAGEPLGPLAGVPFAVKNLFDVAGLTTLAGSKINRDRPPATRDATAVRRLEAAGAVLVG 122
Query: 211 KLVSGSLAYDDIWFG------GRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 257
L AY F G TRNP ++ + GSS G AA +AG++ F+
Sbjct: 123 ALNMDEYAYG---FTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFT 172
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 94.7 bits (236), Expect = 3e-22
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 92 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADEL 151
D+A ++ +EL A R +++ E T+ L R+ R +PA+ A E A A+ ++E
Sbjct: 3 DLADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEER 62
Query: 152 LAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGS-TTFKNQVLNTEAWVYKRLKSAGAVLVA 210
+G+ G L G+P +KDI + T GS + + +A RL+ AGAVL+
Sbjct: 63 WRRGEPCGLLDGVPVSIKDIFLTRGWPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLG 122
Query: 211 KLVSGSLAYDDIWFG-------GRTRNPWNIEEFSTGSSAGPAACTSAG 252
K + W G G TRNPW+ + GSS G AA + G
Sbjct: 123 KTTTPEFG----WKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALG 167
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 94.6 bits (235), Expect = 4e-22
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 5/165 (3%)
Query: 92 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADEL 151
D+AF ++ ++T+ L ++L+R++R + L A + A +A+ A +
Sbjct: 5 DLAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQR 64
Query: 152 LAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAK 211
L G+ L PL G+P +KD + V TT+GS ++A V +RL++AGAV++ K
Sbjct: 65 LDAGERL-PLLGVPIAIKDDVDVAGEVTTYGSAG-HGPAATSDAEVVRRLRAAGAVIIGK 122
Query: 212 LVS---GSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGI 253
+ + + G TRNPW+ GSS G AA +AG+
Sbjct: 123 TNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGL 167
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 93.3 bits (232), Expect = 1e-21
Identities = 57/174 (32%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
Query: 97 SVLELGALIRTKQITSEELTRIFLKRLKRY---NPALEAVVTYTDELAYQQAKEADELLA 153
L A + + +LTR +L+R+ R P L AV+ + A A D
Sbjct: 7 RAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIE-LNPDAEADAAALDAERK 65
Query: 154 QGKYLGPLHGIPYGLKD-IIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL 212
GK GPLHGIP LKD I A TT GS +A++ RL+ AGAV++ K
Sbjct: 66 AGKVRGPLHGIPVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKA 125
Query: 213 -------------VSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGI 253
SG A GG TRNP+ ++ GSS+G A +AG+
Sbjct: 126 NLSEWANFRSTRSSSGWSA-----RGGLTRNPYALDRSPCGSSSGSGAAVAAGL 174
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 93.2 bits (232), Expect = 1e-21
Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 18/165 (10%)
Query: 101 LGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGP 160
L L++ K+I+ +E+ L R++ + A + T E A +QAK+ D+ + P
Sbjct: 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAIL-----TP 55
Query: 161 LHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL-------- 212
L GIP +KD I+ TT S +N + +A V +RLK AGA+++ K
Sbjct: 56 LAGIPIAVKDNISTKGIVTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEFAMG 115
Query: 213 VSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 257
S + F G T+NPWN++ GSS G AA +A + FS
Sbjct: 116 SSTETSA----F-GPTKNPWNLDRVPGGSSGGSAAAVAADLAPFS 155
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 90.8 bits (226), Expect = 7e-21
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Query: 88 ENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKE 147
+ D+A +S+ E A +R+ +++ EL L R P L A T E A A+
Sbjct: 3 HRDPDVASLSLTEAAAALRSGRLSCLELVEALLARAAALAP-LNAFTTVDAEGALAAARR 61
Query: 148 ADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAV 207
D A G L L G+P +KD I TT G+ V T+A V +RL AGAV
Sbjct: 62 IDAQRAAGAAL-LLAGVPIVIKDNINTAGMPTTAGTPALLGFVPATDAPVVQRLLDAGAV 120
Query: 208 LVAKLVSGSLAY---DDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILL 255
+ K LA+ + G RNP++ + GSS G AA +A +
Sbjct: 121 PLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAP 171
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 90.2 bits (224), Expect = 1e-20
Identities = 57/171 (33%), Positives = 88/171 (51%), Gaps = 12/171 (7%)
Query: 97 SVLELGALIRTKQITSEELTRIFLKRLKRYN-----PALEAVVTYTDELAYQQAKEADEL 151
S+ EL A + + + T+ EL + +L R+ Y+ AL AVV + A ++A+ +D
Sbjct: 8 SIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDAR 66
Query: 152 LAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAK 211
A+G+ LGPL GIPY KD V GS FK+ V +A+ +RL++AGA+ + K
Sbjct: 67 RARGETLGPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGK 126
Query: 212 LVSGSLAYDDIWFG--GRTRNPWNIE----EFSTGSSAGPAACTSAGILLF 256
+A + G GR +P+N F++GSS G T+A F
Sbjct: 127 TNMPPMANGGMQRGVYGRAESPYNAAYLTAPFASGSSNGAGTATAASFSAF 177
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 87.9 bits (218), Expect = 6e-20
Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 10/168 (5%)
Query: 97 SVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGK 156
S++E+ IR+ ++++ + L R+ + + L A T E A A D LA G
Sbjct: 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGS 60
Query: 157 YLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNT-EAWVYKRLKSAGAVLVAKLVSG 215
LGPL G+P+ +K++ V T G+ ++ +A + +RL +AGAVLV L
Sbjct: 61 PLGPLAGVPFAVKNLFDVAGLTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMD 120
Query: 216 SLAYDDIWFG------GRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 257
AY F G TRNP ++ + GSS G AA +AG++ FS
Sbjct: 121 EFAYG---FTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFS 165
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 81.2 bits (201), Expect = 1e-17
Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 21/169 (12%)
Query: 96 MSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQG 155
+S +EL A R + ++ E+T L + R+ P L A+ + E A A+ + A+G
Sbjct: 7 LSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKG 66
Query: 156 KYLGPLHGIPYGLKDIIA-----VPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVA 210
+ LGPL G+P +K+ IA VP G+ +A RL+ AGAV++A
Sbjct: 67 EPLGPLDGVPVTIKENIATRGVPVPL-----GTAATDLPPAAADAPPAARLREAGAVILA 121
Query: 211 K-------LVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAG 252
K ++S L+ F G TRNPW++++ GSSAG A +AG
Sbjct: 122 KTTMPDYGMLSSGLSS----FHGLTRNPWDLDQNPGGSSAGAGAAAAAG 166
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 77.8 bits (192), Expect = 2e-16
Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 15/183 (8%)
Query: 79 PSISDIQKPENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTD 138
S SD + + + + + +TS EL R L+R++ P L A
Sbjct: 1 ASGSDAGAISGSGNDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRA 60
Query: 139 ELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWG-STTFKNQVLNTEAWV 197
E A +A EAD A G L PL G+P +KD + V T +G + ++E V
Sbjct: 61 EAALAEAAEADRRRAAGDRL-PLLGVPIAVKDDVDVAGVPTAFGTAGEVPPATADSE--V 117
Query: 198 YKRLKSAGAVLVAKLVSGSLAYDDIW-------FGGRTRNPWNIEEFSTGSSAGPAACTS 250
+RL++AGAV+V K + L W FG TRNPW+ + GSS G AA +
Sbjct: 118 VRRLRAAGAVIVGKTNTCELGQ---WPFTSGPAFG-HTRNPWSRDHTPGGSSGGSAAAVA 173
Query: 251 AGI 253
AG+
Sbjct: 174 AGL 176
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional.
Length = 491
Score = 72.2 bits (177), Expect = 2e-14
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 96 MSVLELGALIRTKQITSEELTRIFLKRLKRYN---PALEAVVTYTDELAYQQAKEADELL 152
+++ ++ + ++TS+EL +L R+ +Y+ P + +++ + A A+ D
Sbjct: 13 LTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHER 71
Query: 153 AQGKYLGPLHGIPYGLKDIIAV-PQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAK 211
GPLHGIP LKD I T+ G+ + + + +A++ +L+ AGAV++ K
Sbjct: 72 KIKGVRGPLHGIPVLLKDNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVILGK 131
Query: 212 LVSGSLA---YDDIWF-----GGRTRNPWNIEE---FSTGSSAGPAACTSAGILLFS 257
LA ++W GG+T NP+ E F GSS G A +A + S
Sbjct: 132 ANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVGGSSTGSAIAVAANFTVVS 188
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 63.5 bits (155), Expect = 2e-11
Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 15/162 (9%)
Query: 99 LELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYL 158
+ L IR ++++ E+ + R + NPAL A+ + A +A G
Sbjct: 18 VGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARP------GSQG 71
Query: 159 GPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKL------ 212
G G+P +KD + V T GS + + ++ ++ + G + + K
Sbjct: 72 GFFSGVPTFIKDNVDVAGLPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEFG 131
Query: 213 VSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGIL 254
S S + G RNPWN + + SS G AA +AG++
Sbjct: 132 FSASTEHPR---LGPVRNPWNTDYSAGASSGGSAALVAAGVV 170
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 59.3 bits (143), Expect = 4e-10
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 16/171 (9%)
Query: 88 ENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNP---ALEAVVTYTDELAYQQ 144
E I V +L LI TKQ++ +EL I+L R+K+Y+ L A+ E+
Sbjct: 157 AKEPLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAIT----EINPTI 212
Query: 145 AKEADELLAQGKYLGP-LHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKS 203
EA++L + L+G+P LKD I + T+ G+ K+ V+ +A + + LK+
Sbjct: 213 IAEAEQLDKENTTNKSALYGMPVLLKDNIGTKELPTSAGTVALKDWVIGKDATIVENLKA 272
Query: 204 AGAVLVAKLVSGSLAY---DDIWFG-----GRTRNPWNIEEFSTGSSAGPA 246
GA+++ K A +D+ G G+++NP++ +GSS+G A
Sbjct: 273 NGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSA 323
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional.
Length = 502
Score = 58.9 bits (143), Expect = 6e-10
Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 18/139 (12%)
Query: 128 PALEAVVTYTDELAYQQAKEADELLA-------QGKYLGPLHGIPYGLKDIIAVPQYKTT 180
P V Y Y+ E + A +G G L G LKD +AV
Sbjct: 48 PDEIPPVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMM 107
Query: 181 WGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYDDIWFGGR-------TRNPWN 233
GS+T + V + +A V RL AGA +V K L + GG NP +
Sbjct: 108 NGSSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDLC----FSGGSHTSDPGPVHNPRD 163
Query: 234 IEEFSTGSSAGPAACTSAG 252
+ GSS+G AA +AG
Sbjct: 164 PGYSAGGSSSGSAALVAAG 182
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 57.5 bits (139), Expect = 1e-09
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 105 IRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPLHGI 164
++ Q+T EL + + K+ NP L A+V+ E A ++AK+ D GK P G+
Sbjct: 13 VQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFS---GK---PFAGV 66
Query: 165 PYGLKDIIAVPQYKT----TWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLAYD 220
P LKD+ Q T GS FKN KRL+ G +++ + + +
Sbjct: 67 PIFLKDL---GQELKGQLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGFK 123
Query: 221 DIWFG---GRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 257
+I G P++ + GSS G AA S+GI+ +
Sbjct: 124 NISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVALA 163
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 57.6 bits (139), Expect = 2e-09
Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 14/188 (7%)
Query: 83 DIQKPE-NEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRY--NPALEAVVTYTDE 139
+I+ + E+++ +V EL +I +++ EELT I+L R++ + N VT +
Sbjct: 57 NIENVKIKEKEVVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINP 116
Query: 140 LAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQ-YKTTWGSTTFKNQVLNTEAWVY 198
A ++A++ D+ ++ K L+GIP +KD + + T+ G+ K+ + + +A +
Sbjct: 117 NAMEEARKLDQERSRNKK-SNLYGIPVVVKDNVQTAKVMPTSAGTYVLKDWIADQDATIV 175
Query: 199 KRLKSAGAVLVAKLVSGSLA-YDDIWF-------GGRTRNPWNIEEFST-GSSAGPAACT 249
K+LK GA ++ K A Y G+ NP+ +F T GSS+G A
Sbjct: 176 KQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDTSGSSSGSATVV 235
Query: 250 SAGILLFS 257
+A +
Sbjct: 236 AADFAPLA 243
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional.
Length = 452
Score = 54.3 bits (131), Expect = 2e-08
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 12/174 (6%)
Query: 86 KPENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQA 145
K + A ++VL + Q+ + L I ++ T+E A ++A
Sbjct: 1 KSTGAKSAAQLAVLIQSGALDPVQVAEQALDAI------ASYADQAVFISLTEERAMREA 54
Query: 146 KEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVL-NTEAWVYKRLKSA 204
+ + G+ LG L GIP KD+ V TT GS N + +A V L A
Sbjct: 55 EASSARWRAGRSLGLLDGIPIAWKDLFDVAGSVTTAGSVVLANAAPASRDAAVVALLARA 114
Query: 205 GAVLVAKLVSGSLAYDDIWFG---GRTRNPWNIEE--FSTGSSAGPAACTSAGI 253
G V + + A+ + G NP + + GSS+G A +AG+
Sbjct: 115 GMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGL 168
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 51.1 bits (123), Expect = 2e-07
Identities = 49/164 (29%), Positives = 64/164 (39%), Gaps = 13/164 (7%)
Query: 100 ELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTD-ELAYQQAKEADELLAQGKYL 158
L A + + TS L L R+ V T+ D + A A AD L A G
Sbjct: 10 ALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAP 69
Query: 159 GPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTE-AWVYKRLKSAGAVLVAKLVSGSL 217
PL GIP +KD+ V T GS + A RL+ AGAVL+ +
Sbjct: 70 SPLAGIPVSVKDLFDVAGQVTRAGSRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEF 129
Query: 218 AYDDIWFG-----GRTRNPWN----IEEFSTGSSAGPAACTSAG 252
A+ + G G RNPW GSS+G A + G
Sbjct: 130 AFSGL--GLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADG 171
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase. Allophanate
hydrolase catalyzes the second reaction in an
ATP-dependent two-step degradation of urea to ammonia
and C02, following the action of the biotin-containing
urea carboxylase. The yeast enzyme, a fusion of
allophanate hydrolase to urea carboxylase, is designated
urea amidolyase [Central intermediary metabolism,
Nitrogen metabolism].
Length = 561
Score = 50.8 bits (122), Expect = 2e-07
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 17/130 (13%)
Query: 137 TDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAW 196
++E QA D A+ + L PL+G+P+ +KD I V TT F +A
Sbjct: 9 SEEDLLAQAAALDARDARPERL-PLYGVPFAVKDNIDVAGLPTTAACPAFAYTP-EEDAT 66
Query: 197 VYKRLKSAGAVLVAK---------LVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAA 247
V L++AGA++V K LV Y G RN ++ S GSS+G A
Sbjct: 67 VVALLRAAGAIVVGKTNLDQFATGLVGTRSPY------GAVRNAFDPAYISGGSSSGSAV 120
Query: 248 CTSAGILLFS 257
+ G++ F+
Sbjct: 121 AVARGLVPFA 130
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional.
Length = 395
Score = 48.1 bits (115), Expect = 2e-06
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 158 LGPLHGIPYGLKDIIAVPQYKTTWGSTTF--KNQVLNTEAWVYKRLKSAGAVLVAKLVSG 215
GPL G+ + +KD+ V Y T G+ + ++ V A ++L +AGA V K +
Sbjct: 23 SGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKTQTD 82
Query: 216 SLAYDDIWFG-----GRTRNPWNIEEFSTGSSAGPAACTSAG 252
LA+ G G NP + GSS+G AA + G
Sbjct: 83 ELAFS--LNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGG 122
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional.
Length = 600
Score = 45.6 bits (109), Expect = 1e-05
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 26/125 (20%)
Query: 147 EADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGA 206
+A L A+ PL+G+P+ +KD I V TT F +A V RL++AGA
Sbjct: 55 QAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAACPAFAYTP-ERDATVVARLRAAGA 113
Query: 207 VLVAK---------LVSGSLAYDDIWFGGRT-----RNPWNIEEFSTGSSAGPAACTSAG 252
+++ K LV G R+ RN ++ E S GSS+G A + G
Sbjct: 114 IVIGKTNLDQFATGLV-----------GTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALG 162
Query: 253 ILLFS 257
++ F+
Sbjct: 163 LVSFA 167
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated.
Length = 424
Score = 41.7 bits (98), Expect = 2e-04
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 139 ELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNT-EAWV 197
E A +A AD G+ LGPL G +KD+ V T GS ++ +A +
Sbjct: 24 ERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRDAPPAGADALI 83
Query: 198 YKRLKSAGAVLVAK 211
+RL++AGAV++ K
Sbjct: 84 VQRLRNAGAVIIGK 97
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase.
Length = 422
Score = 41.0 bits (96), Expect = 4e-04
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 160 PLHGIPYGLKDIIAVPQYKTTWGSTTF--KNQVLNTEAWVYKRLKSAGAVLVAKLVSGSL 217
PLHG+ + +KDI V Y T +G+ + + + A + GA V K + +
Sbjct: 26 PLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCVGKTIMDEM 85
Query: 218 AY----DDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 257
AY ++ + G NP + GSS+G A A ++ FS
Sbjct: 86 AYSINGENAHY-GTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFS 128
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 40.8 bits (96), Expect = 4e-04
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 159 GPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLA 218
GPL + +KD A + T S + +N + A V ++L +AGA VAK+
Sbjct: 35 GPLANCVFTIKDNFATSEGPTHASSKSLENFKPSYNATVVQKLINAGAKPVAKVHC---- 90
Query: 219 YDDIWFGGR--------TRNPWNIEEFSTGSSAGPAA 247
D++ GG +NP + + GSS+G AA
Sbjct: 91 -DELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAA 126
>gnl|CDD|221072 pfam11309, DUF3112, Protein of unknown function (DUF3112). This
eukaryotic family of proteins has no known function.
Length = 160
Score = 34.5 bits (80), Expect = 0.021
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 191 LNTEAW-VYKRLKSAGAVLVAKLVSGSLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAACT 249
L+ + + + A +VL+ +A + + R PW IE F G
Sbjct: 39 LSEHTYRQCRDVVLAASVLILVYSLLPVALILLAYLLPRRKPWWIESFGPGKLN-----V 93
Query: 250 SAGILLFSYC 259
S I++ +
Sbjct: 94 SVIIIIITTL 103
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 30.9 bits (70), Expect = 0.81
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 16/77 (20%)
Query: 133 VVTYTDELAYQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVP-QYKTTWGSTTFKNQVL 191
VV ++DE + ++L + P GIP GL+ +P W S
Sbjct: 250 VVAHSDEGGITR-----DVLRHLGFRQPYGGIPQGLEQYSGLPALASPAWDSFA------ 298
Query: 192 NTEAWV-YKRLKSAGAV 207
A+V L +A V
Sbjct: 299 ---AYVDAIALATAALV 312
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 30.3 bits (68), Expect = 0.97
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 145 AKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTT---FKNQVLNTE 194
AK A + + LG +HGI +D A + +T FKN+++ T+
Sbjct: 139 AKAAGMMGLTAEMLGKMHGISREQQDAFAARSHARAHAATQEGKFKNEIIPTQ 191
>gnl|CDD|236646 PRK10064, PRK10064, catecholate siderophore receptor CirA;
Provisional.
Length = 663
Score = 29.1 bits (65), Expect = 2.4
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 55 PSVLTFNPDWGTEQEQEASKIFNYPSISDIQKPENEE 91
PS+L +PDW + + A KI P + KPE E
Sbjct: 421 PSLLQLSPDWTSNSCRGACKIVGSPDL----KPETSE 453
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 28.6 bits (64), Expect = 3.2
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 115 LTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYLGPL 161
L +I ++Y AL ++ T ELA Q A+E +L GK LG L
Sbjct: 88 LQKILKSVERKYVSAL--ILAPTRELAVQIAEELRKL---GKNLGGL 129
>gnl|CDD|224368 COG1451, COG1451, Predicted metal-dependent hydrolase [General
function prediction only].
Length = 223
Score = 28.2 bits (63), Expect = 3.7
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 11/87 (12%)
Query: 112 SEELTRIFLKRLKRYNPALEAVVT------YTDELAYQQAKEADELLAQGKYLGPLHGIP 165
++ I K P + V Y ++ + +E E+ K G+P
Sbjct: 82 GKKYELIVHKGHVLIAPGVHDEVADENLKAYLEDFLKEILREILEIRL--KEYAKKLGVP 139
Query: 166 YGLKDIIAVPQYKTTWGSTTFKNQVLN 192
I + K WGS + ++
Sbjct: 140 P---RAIKLKNMKRRWGSCSKAGEIRF 163
>gnl|CDD|215814 pfam00242, DNA_pol_viral_N, DNA polymerase (viral) N-terminal
domain.
Length = 379
Score = 27.9 bits (62), Expect = 5.2
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 51 GLHNPSVLTFNPDWGTEQEQEASKIFNYPSISDI 84
GL++ +V TFNP+W T P DI
Sbjct: 66 GLYSSTVPTFNPEWKT------------PDFPDI 87
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 27.7 bits (62), Expect = 7.2
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 77 NYPSISDIQKPENEEDIAFMSVLELGA-----LIRTKQITSEELTRIFLKRLKR 125
N +I DI +P + V++L +I + Q +EE R FL +L R
Sbjct: 65 NIIAIRDILRPPGADFKDVYVVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLR 118
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 27.6 bits (62), Expect = 7.7
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 77 NYPSISDIQKPENEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRY------NPAL 130
+ + ++ + + K+ + EE++ + LK+LK P
Sbjct: 73 KFDDPLVQSAKKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKLKEDAEAYLGEPVT 132
Query: 131 EAVVT---YTDELAYQQAKEA 148
EAV+T Y ++ + KEA
Sbjct: 133 EAVITVPAYFNDAQREATKEA 153
>gnl|CDD|183248 PRK11636, mrcA, penicillin-binding protein 1a; Provisional.
Length = 850
Score = 27.4 bits (61), Expect = 9.2
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 120 LKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQG 155
LK L Y P L AVVT + +EA +LA G
Sbjct: 340 LKALPTYGPLLPAVVTSAN------PQEATAMLADG 369
>gnl|CDD|224935 COG2024, COG2024, Phenylalanyl-tRNA synthetase alpha subunit
(archaeal type) [Translation, ribosomal structure and
biogenesis].
Length = 536
Score = 27.5 bits (61), Expect = 9.3
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 126 YNPALEAVVTYTDELAYQQAKEADELLAQG 155
+ + Y + LA + A E +E L G
Sbjct: 456 EEEGVYTGIRYIEGLAARAAYEIEEALVSG 485
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.392
Gapped
Lambda K H
0.267 0.0767 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,316,550
Number of extensions: 1282753
Number of successful extensions: 1242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1186
Number of HSP's successfully gapped: 48
Length of query: 259
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 164
Effective length of database: 6,723,972
Effective search space: 1102731408
Effective search space used: 1102731408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)