RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 024999
(259 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 126 bits (318), Expect = 2e-34
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Query: 92 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADEL 151
I + SV L LI+ K+I ++ + ++ +P +++ + E A ++A+E DEL
Sbjct: 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDEL 61
Query: 152 LAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAK 211
A+ + G L GIP G+KD I +TT S + V E+ V ++L AVL+ K
Sbjct: 62 QAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGK 121
Query: 212 LVSGSLAYDDIW---FGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFS 257
L A + +T NP++ + GSS G AA +AG++ S
Sbjct: 122 LNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLS 170
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 125 bits (315), Expect = 8e-34
Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 12/181 (6%)
Query: 83 DIQKPE-NEEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELA 141
+Q P+ + E + + +L+L +++ +++ E + +L + N V +Y +
Sbjct: 27 RLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD-- 84
Query: 142 YQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRL 201
+ L+Q G L+G+P LK+ + + +T G + + ++ V + L
Sbjct: 85 ------CETQLSQAPRQGLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVL 138
Query: 202 KSAGAVLVAKLVSGSLAY---DDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSY 258
K GAV G+T NPW + GSS G A +G
Sbjct: 139 KLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGL 198
Query: 259 C 259
Sbjct: 199 G 199
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 115 bits (287), Expect = 4e-30
Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 13/179 (7%)
Query: 92 DIAFMSVLELGALIRTKQITSEELTRIFLKRLKRY---NPALEAVVTYTDELAYQQAKEA 148
A V +L A + ++ S LT+ +L+R+ P L AV+ + A ++A E
Sbjct: 3 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAER 61
Query: 149 DELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVL 208
D G+ GPLHGIP LKD I T+ GS + +A++ +RL+ AGAV+
Sbjct: 62 DRERRDGRLRGPLHGIPLLLKDNINAAPMATSAGSLALQGFR-PDDAYLVRRLRDAGAVV 120
Query: 209 VAKLVSGSLAYDDIW--------FGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC 259
+ K A GG+TRNP+ I GSS+G A +A + +
Sbjct: 121 LGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIG 179
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 100 bits (250), Expect = 6e-25
Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 13/161 (8%)
Query: 99 LELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQGKYL 158
L + ++ + E+L ++ L+ +KR +P ++A ++ + ++ ++
Sbjct: 9 LTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKK------------- 55
Query: 159 GPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSGSLA 218
G GIP +KD I +TT S +N +A V K++K AG V+V K A
Sbjct: 56 GKFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFA 115
Query: 219 YDDIWFGGRTRNPWNIEEFSTGSSAGPAACTSAGILLFSYC 259
N + +A
Sbjct: 116 MGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVA 156
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 99.8 bits (247), Expect = 8e-25
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 13/153 (8%)
Query: 96 MSVLELGALIRTKQITSEELTRIFLKRLKRYNPALEAVVTYTDELAYQQAKEADELLAQG 155
+S+ +L I T +++ ++ + A V + A+
Sbjct: 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKS-------------ARA 48
Query: 156 KYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQVLNTEAWVYKRLKSAGAVLVAKLVSG 215
+ GPL GI G+KDII T GS ++ ++A V LK AGA ++ K +
Sbjct: 49 QASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTT 108
Query: 216 SLAYDDIWFGGRTRNPWNIEEFSTGSSAGPAAC 248
+ A D N + S+ SA
Sbjct: 109 AFASRDPTATLNPHNTGHSPGGSSSGSAAAVGA 141
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 30.9 bits (70), Expect = 0.067
Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 24/132 (18%)
Query: 90 EEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNPA--------LEAVVTYTDELA 141
E+D + ++ + T + +++ LE + + E
Sbjct: 16 EQDWS--AIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKF 73
Query: 142 YQQ-AKEA--DEL--LAQGKYLGPLHGIPYGLKD-IIAVPQYKTTWGSTTFKNQVLNTEA 195
+ + AK +EL + KYLG +K +I + +W + F + +A
Sbjct: 74 HSEVAKFRFLNELIKVLSPKYLGSW--ATGKVKGRVIEILF---SW-TVWFPEDIKIRDA 127
Query: 196 WVYKRLKSAGAV 207
Y+ LK G +
Sbjct: 128 --YQMLKKQGII 137
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 29.0 bits (65), Expect = 0.35
Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 24/133 (18%)
Query: 90 EEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNP--------ALEAVVTYTDELA 141
+ED ++ I + + R+ +++ LEA +
Sbjct: 17 QEDWE--YIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRF 74
Query: 142 YQQ-AKEA--DEL--LAQGKYLGPLHGIPYGLKD-IIAVPQYKTTWGSTTFKNQVLNTEA 195
+ + K +EL + KYLG + +K +I + +W +
Sbjct: 75 HNEVGKFRFLNELIKVVSPKYLGD--RVSEKVKTKVIELLY---SW-TMALPE--EAKIK 126
Query: 196 WVYKRLKSAGAVL 208
Y LK G V
Sbjct: 127 DAYHMLKRQGIVQ 139
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 145
Score = 28.3 bits (63), Expect = 0.51
Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 16/125 (12%)
Query: 90 EEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNP--------ALEAVVTYTDELA 141
E D S+L + I K +T + K++ NP LE++V
Sbjct: 20 EPDWP--SILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPV 77
Query: 142 YQQAKEADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQV-LNTEAWVYKR 200
+++ + +L K ++ + Q TW + F++
Sbjct: 78 HEEVFTKENCEMFSSFLESTPHENVRQK-MLELVQ---TW-AYAFRSSDKYQAIKDTMTI 132
Query: 201 LKSAG 205
LK+ G
Sbjct: 133 LKAKG 137
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 28.2 bits (63), Expect = 0.54
Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 24/132 (18%)
Query: 90 EEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRYNP--------ALEAVVTYTDELA 141
E D A S+ + TR+ +++ LE + +
Sbjct: 23 ELDWA--SINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRF 80
Query: 142 YQQ-AKEA--DEL--LAQGKYLGPLHGIPYGLKD-IIAVPQYKTTWGSTTFKNQVLNTEA 195
+ + K +EL + KYLG +K+ I+ + +W + A
Sbjct: 81 HDEVGKFRFLNELIKVVSPKYLGS--RTSEKVKNKILELLY---SW-TVGLPE--EVKIA 132
Query: 196 WVYKRLKSAGAV 207
Y+ LK G V
Sbjct: 133 EAYQMLKKQGIV 144
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent
helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 25.6 bits (56), Expect = 3.0
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 94 AFMSVLELGALIRTKQITSEELTRIF---LKRLKRYNPALEAVVTYTDE 139
+ L + + + T E + RI + P LE + +
Sbjct: 36 ILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAPLLEVIKHFCQT 84
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Length = 74
Score = 24.7 bits (54), Expect = 3.4
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 82 SDIQKPENEEDIAFMSVLELGALIRTKQITSEELTRI 118
SD + P + I+ MS+ EL +++ + ++ + I
Sbjct: 11 SDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLI 47
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 153
Score = 25.6 bits (56), Expect = 5.0
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 20/129 (15%)
Query: 90 EEDIAFMSVLELGALIRTKQITSEELTRIFLKRLKRY-NP--------ALEAVVTYTDEL 140
ED A +E+ +I + ++ R KR+ N LE V
Sbjct: 27 SEDWALN--MEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR 84
Query: 141 AYQQAKE---ADELLAQGKYLGPLHGIPYGLKDIIAVPQYKTTWGSTTFKNQV-LNTEAW 196
+ + +L + + P + P + D + +W + F++ L
Sbjct: 85 FHVLVASQDFVESVLV--RTILPKNNPPTIVHDKVL--NLIQSW-ADAFRSSPDLTGVVT 139
Query: 197 VYKRLKSAG 205
+Y+ L+ G
Sbjct: 140 IYEDLRRKG 148
>d1v96a1 c.120.1.1 (A:2-149) Hypothetical protein PH0500
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 148
Score = 25.3 bits (55), Expect = 5.2
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 12 LLDSNFF------NERKVLEIAKGATEFNLPII 38
DS N +++LE+ NL I+
Sbjct: 7 TFDSLALIKMHSQNMKRILEVTLAKFTVNLSIV 39
>d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId:
1422]}
Length = 119
Score = 24.7 bits (54), Expect = 7.9
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 64 WGTEQEQEASKIFNYPSISDIQKPENEEDIAFMS 97
W + S +F Y KP N E IA ++
Sbjct: 77 WSRGNLESISSLFGYTVSVSKAKPTNSEFIAMVA 110
>d2p3ya1 e.65.1.1 (A:22-482) Hypothetical protein VPA0735 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 461
Score = 25.4 bits (55), Expect = 8.6
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 128 PALEAVVTYTDELAYQQAKEA 148
P E + +E+ +Q+A +A
Sbjct: 19 PTQETMKNMLNEMDFQRATQA 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.392
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 959,294
Number of extensions: 43714
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 16
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)