BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025000
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E2Q|A Chain A, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|B Chain B, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|C Chain C, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|D Chain D, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|E Chain E, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|F Chain F, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|G Chain G, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|H Chain H, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|I Chain I, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|J Chain J, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|K Chain K, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|L Chain L, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|M Chain M, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|N Chain N, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|O Chain O, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2Q|P Chain P, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana
pdb|4E2S|A Chain A, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|B Chain B, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|C Chain C, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|D Chain D, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|E Chain E, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|F Chain F, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|G Chain G, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|H Chain H, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|I Chain I, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|J Chain J, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|K Chain K, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|L Chain L, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|M Chain M, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|N Chain N, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|O Chain O, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
pdb|4E2S|P Chain P, Crystal Structure Of (S)-Ureidoglycine Aminohydrolase From
Arabidopsis Thaliana In Complex With Its Substrate,
(S)-Ureidoglycine
Length = 266
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 214/259 (82%), Positives = 229/259 (88%)
Query: 1 MYWKVTNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG 60
+YWK TNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV SPLP+WTNTLGAYLITPA G
Sbjct: 8 IYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHVYSPLPDWTNTLGAYLITPATG 67
Query: 61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAH 120
SHFVMYLA M+E + S LPP D+ER IFVV+G+ LTN S S KL VDSY YLPPNF H
Sbjct: 68 SHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTSSSSKKLTVDSYAYLPPNFHH 127
Query: 121 SLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFN 180
SL SATLVVFERRY L +H TE IVGSTDKQPLLETPGEVF+LRKLLP +V +DFN
Sbjct: 128 SLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLETPGEVFELRKLLPMSVAYDFN 187
Query: 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAA 240
IH MDFQPG+FLNVKEVHYNQHGLLLLEGQGIYRLGD+WYPVQAGDV+WMAPFVPQWYAA
Sbjct: 188 IHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAA 247
Query: 241 LGKTRTRYLLYKDVNRNPL 259
LGKTR+RYLLYKDVNRNPL
Sbjct: 248 LGKTRSRYLLYKDVNRNPL 266
>pdb|1SFN|A Chain A, Crystal Structure Of Protein Dr1152 From Deinococcus
Radiodurans R1, Pfam Duf861
pdb|1SFN|B Chain B, Crystal Structure Of Protein Dr1152 From Deinococcus
Radiodurans R1, Pfam Duf861
Length = 246
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 137/248 (55%), Gaps = 15/248 (6%)
Query: 20 GFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITP--AMGSHFVMYLANMQENARSA 77
G TRS HA+ITPE+ V + L EW + I P +G+ FV + A M A++
Sbjct: 5 GQTRSALHGSHAVITPETFVRTALAEWPGSAIVLHIAPVVGLGARFVQFTAEMPAGAQAT 64
Query: 78 LPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRY 137
+ +RF FV+ G + G + L Y YLP H L A+ A + VFE+ Y
Sbjct: 65 ESVY--QRFAFVLSGEVDVA-VGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPY 121
Query: 138 ASLENHITEQIVGSTDKQPLLETPGEVFQ------LRKLLPQAVPFDFNIHIMDFQPGDF 191
++E + ++ E PG F+ RKLLP FDF + M F PG
Sbjct: 122 QTVEGVQAPGVYWGNER----ENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGAS 177
Query: 192 LNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251
L EVHY +HGLL+LEG+G+Y+L +++YPV AGD++WM PQWY ALG+ ++YLLY
Sbjct: 178 LPYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLY 237
Query: 252 KDVNRNPL 259
KD+NR+PL
Sbjct: 238 KDMNRHPL 245
>pdb|1SEF|A Chain A, Crystal Structure Of Cupin Domain Protein Ef2996 From
Enterococcus Faecalis
Length = 274
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 8/244 (3%)
Query: 22 TRSVYKRDHALITP-ESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENAR--SAL 78
+R+V K+D+ I P + V + +P + N + L +P +G+ FV Y+A +N + +
Sbjct: 20 SRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGF 79
Query: 79 PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR--AEGSATLVVFERR 136
++ ++V+ G +++ + +L Y Y P L E + ++++R
Sbjct: 80 GGDGIQTLVYVIDGRLRVSDGQ-ETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKR 138
Query: 137 YASLENHITEQIVGST-DKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVK 195
Y L H ++VGS D+QP L LLP+ FD N+HI+ F+PG
Sbjct: 139 YQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYI 198
Query: 196 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR-TRYLLYKDV 254
E H +HG L+ GQG+Y L + WYPV+ GD ++M+ +VPQ A+G+ Y+ KD
Sbjct: 199 ETHVQEHGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKDA 258
Query: 255 NRNP 258
NR P
Sbjct: 259 NREP 262
>pdb|1RC6|A Chain A, Crystal Structure Of Protein Ylba From E. Coli, Pfam
Duf861
pdb|1RC6|B Chain B, Crystal Structure Of Protein Ylba From E. Coli, Pfam
Duf861
Length = 261
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 10/244 (4%)
Query: 22 TRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPP 80
R++ K + AL+TP+ V + +P + N L TP +G+ FV YL + +N +
Sbjct: 17 NRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGF 76
Query: 81 HD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL---RAEGSATLVVFER 135
+E F++V+ G+ + A G + L Y Y PP + +AE S + +++R
Sbjct: 77 GGEGIETFLYVISGN-ITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDS-QIFLYKR 134
Query: 136 RYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV 194
RY +E + + G+ + + G + L LP+ + FD N+HI+ F PG
Sbjct: 135 RYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGY 194
Query: 195 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RYLLYKD 253
E H +HG +L GQG+Y L ++W PV+ GD ++M + Q +G+ Y+ KD
Sbjct: 195 IETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKD 254
Query: 254 VNRN 257
NR+
Sbjct: 255 CNRD 258
>pdb|1SQ4|A Chain A, Crystal Structure Of The Putative Glyoxylate Induced
Protein From Pseudomonas Aeruginosa, Northeast
Structural Genomics Target Par14
pdb|1SQ4|B Chain B, Crystal Structure Of The Putative Glyoxylate Induced
Protein From Pseudomonas Aeruginosa, Northeast
Structural Genomics Target Par14
Length = 278
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 106/229 (46%), Gaps = 11/229 (4%)
Query: 39 VLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALPPHD--VERFIFVVQGSA 94
V S LP W N + P G F Y+ + N S P D E +FVV+G
Sbjct: 42 VTSHLPFWDNXRXWVIARPLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGEL 101
Query: 95 MLTNASGVSSKLMVDSYTYLPPNFAHSLR-AEGSATLVVFERRYASLENHI---TEQIVG 150
LT G Y ++PP + +R G T + R++ + + +
Sbjct: 102 SLT-LQGQVHAXQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTN 160
Query: 151 STDKQPLL--ETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLE 208
D QPL+ +T G R + D +++I++F+PG + E H +HGL +LE
Sbjct: 161 EQDIQPLVXPDTEGRWSTTRFVDXSDXRHDXHVNIVNFEPGGVIPFAETHVXEHGLYVLE 220
Query: 209 GQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNRN 257
G+ +YRL W V+AGD W+ F PQ + G R RYLLYKDVNR+
Sbjct: 221 GKAVYRLNQDWVEVEAGDFXWLRAFCPQACYSGGPGRFRYLLYKDVNRH 269
>pdb|1N7U|A Chain A, The Receptor-Binding Protein P2 Of Bacteriophage Prd1:
Crystal Form I
Length = 554
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 150 GSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPG-----DFLNVKEVHYNQHGL 204
G DK LLE P QL + PQ P +++ I+D F+ E Y G
Sbjct: 421 GGLDKTTLLEIPRR--QLEAINPQDGPGQYDLFILDDSGAYASFSSFIGYPEAAYYVAGA 478
Query: 205 LLL-------EGQGIYRLGDSWYPVQAGDVLWMA 231
E I R G WY + GD L +A
Sbjct: 479 ATFMDVENPDEIIFILRNGAGWYACEIGDALKIA 512
>pdb|1N7V|A Chain A, The Receptor-Binding Protein P2 Of Bacteriophage Prd1:
Crystal Form Iii
Length = 555
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 150 GSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPG-----DFLNVKEVHYNQHGL 204
G DK LLE P QL + PQ P +++ I+D F+ E Y G
Sbjct: 421 GGLDKTTLLEIPRR--QLEAINPQDGPGQYDLFILDDSGAYASFSSFIGYPEAAYYVAGA 478
Query: 205 LLL-------EGQGIYRLGDSWYPVQAGDVLWMA 231
E I R G WY + GD L +A
Sbjct: 479 ATFMDVENPDEIIFILRNGAGWYACEIGDALKIA 512
>pdb|2AD1|A Chain A, Human Sulfotransferase Sult1c2
pdb|2GWH|A Chain A, Human Sulfotranferase Sult1c2 In Complex With Pap And
Pentachlorophenol
pdb|2GWH|B Chain B, Human Sulfotranferase Sult1c2 In Complex With Pap And
Pentachlorophenol
Length = 298
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 224 AGDVLWMA--PFVPQWYAALGKTRTRYLLYKDVNRNP 258
AG V W + V W+ A K R YL Y+D+ +NP
Sbjct: 167 AGKVCWGSWHEHVKGWWEAKDKHRILYLFYEDMKKNP 203
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 84 ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG 126
+RF++V++ + + N+S S D T+LPP F + G
Sbjct: 298 QRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRG 340
>pdb|2I45|A Chain A, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|B Chain B, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|C Chain C, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|D Chain D, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|E Chain E, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|F Chain F, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|G Chain G, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|H Chain H, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|I Chain I, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
pdb|2I45|J Chain J, Crystal Structure Of Protein Nmb1881 From Neisseria
Meningitidis
Length = 107
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 84 ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE 134
++ +F V+G + A G S + +P + +H R+E +LV+ E
Sbjct: 49 DKVLFAVEGDXAVDFADGGSXTIREGEXAVVPKSVSHRPRSENGCSLVLIE 99
>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase
(biof) From Francisella Tularensis
Length = 399
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 165 FQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQA 224
+Q LL + PF + I+DF D+LN+ H +H ++ G Y G +
Sbjct: 35 YQRDNLLRELTPFIKDDSIIDFTTSDYLNLSSAHNLKHA--IVNGFDKYGFGSKGSNIVC 92
Query: 225 G 225
G
Sbjct: 93 G 93
>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG9|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|C Chain C, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|E Chain E, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|G Chain G, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 650
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 59 MGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNF 118
+ HF++ + + EN S + + R + + GS + T+A S L V + P +F
Sbjct: 425 ISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVLRTDADQQVSILTVPAEE--PGSF 482
Query: 119 AHSLRAEGSATLVVFERRY 137
A + S+T+ + Y
Sbjct: 483 AVRVIELCSSTMTCMKGTY 501
>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 650
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 59 MGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNF 118
+ HF++ + + EN S + + R + + GS + T+A S L V + P +F
Sbjct: 425 ISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVLKTDADQQVSILTVPAEE--PGSF 482
Query: 119 AHSLRAEGSATLVVFERRY 137
A + S+T+ + Y
Sbjct: 483 AVRVIELCSSTMTCMKGTY 501
>pdb|1YKW|A Chain A, Crystal Structure Of A Novel Rubisco-Like Protein From The
Green Sulfur Bacterium Chlorobium Tepidum
pdb|1YKW|B Chain B, Crystal Structure Of A Novel Rubisco-Like Protein From The
Green Sulfur Bacterium Chlorobium Tepidum
Length = 435
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 65 MYLANMQENARSALPPHDVERFIFVVQGS-AMLTNA--SGVSSKLMVDSYTYLP 115
+YLAN+ + S + HDV V G+ A+L NA G+S+ M+ +YT +P
Sbjct: 234 IYLANITDEVDSLMEKHDVA----VRNGANALLINALPVGLSAVRMLSNYTQVP 283
>pdb|3L2H|A Chain A, Crystal Structure Of Putative Sugar Phosphate Isomerase
(Afe_0303) From Acidithiobacillus Ferrooxidans Atcc
23270 At 1.85 A Resolution
pdb|3L2H|B Chain B, Crystal Structure Of Putative Sugar Phosphate Isomerase
(Afe_0303) From Acidithiobacillus Ferrooxidans Atcc
23270 At 1.85 A Resolution
pdb|3L2H|C Chain C, Crystal Structure Of Putative Sugar Phosphate Isomerase
(Afe_0303) From Acidithiobacillus Ferrooxidans Atcc
23270 At 1.85 A Resolution
pdb|3L2H|D Chain D, Crystal Structure Of Putative Sugar Phosphate Isomerase
(Afe_0303) From Acidithiobacillus Ferrooxidans Atcc
23270 At 1.85 A Resolution
Length = 162
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 160 TPGEVFQLRKLLPQAVPFDF-NIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGD 217
PG V ++ K L AV IH++ +PG +H Y + + +L G+G +
Sbjct: 27 NPGAV-RVNKSLGDAVGLRHXGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTXEN 85
Query: 218 SWYPVQAGD 226
YP+ GD
Sbjct: 86 DQYPIAPGD 94
>pdb|1TEL|A Chain A, Crystal Structure Of A Rubisco-Like Protein From
Chlorobium Tepidum
pdb|1TEL|B Chain B, Crystal Structure Of A Rubisco-Like Protein From
Chlorobium Tepidum
Length = 435
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 65 MYLANMQENARSALPPHDVERFIFVVQGS-AMLTNA--SGVSSKLMVDSYTYLP 115
+YLAN+ + S + HDV V G+ A+L NA G+S+ M+ +YT +P
Sbjct: 234 IYLANITDEVDSLMEKHDVA----VRNGANALLINALPVGLSAVRMLSNYTQVP 283
>pdb|3H74|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum
pdb|3HYO|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum In Complex With Adp
pdb|3IBQ|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum In Complex With Atp
Length = 282
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 76 SALPPHDVERF-IFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE 125
SALP ++ + + S + T+ SG + +VD T+LP FAH RA+
Sbjct: 22 SALPVLTAXQYDVAALPTSLLSTHTSGYGTPAVVDLSTWLPQVFAHWTRAQ 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,266,144
Number of Sequences: 62578
Number of extensions: 348210
Number of successful extensions: 758
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 18
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)