BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025000
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P75713|YLBA_ECOLI Uncharacterized protein YlbA OS=Escherichia coli (strain K12)
GN=ylbA PE=1 SV=1
Length = 261
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 122/244 (50%), Gaps = 10/244 (4%)
Query: 22 TRSVYKR-DHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALPP 80
R++ K + AL+TP+ V + +P + N L TP +G+ FV YL + +N +
Sbjct: 17 NRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGF 76
Query: 81 HD--VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL---RAEGSATLVVFER 135
+E F++V+ G+ + A G + L Y Y PP + +AE S + +++R
Sbjct: 77 GGEGIETFLYVISGN-ITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDS-QIFLYKR 134
Query: 136 RYASLENHITEQIVGSTDKQPLLETPG-EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNV 194
RY +E + + G+ + + G + L LP+ + FD N+HI+ F PG
Sbjct: 135 RYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGY 194
Query: 195 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT-RYLLYKD 253
E H +HG +L GQG+Y L ++W PV+ GD ++M + Q +G+ Y+ KD
Sbjct: 195 IETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKD 254
Query: 254 VNRN 257
NR+
Sbjct: 255 CNRD 258
>sp|B1XT48|PRMA_POLNS Ribosomal protein L11 methyltransferase OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=prmA
PE=3 SV=1
Length = 328
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 138 ASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHI-----MDFQPGDFL 192
+L + + G D+ PL E PG +++ AV FN I +F P
Sbjct: 26 GALSVTVEDDAAGGYDENPLYEEPGLSPEVQAWDRSAVTALFNPEIDTSGSAEFIPELLA 85
Query: 193 NVKEVHYN----QHGLLLLEGQGIYRLGDSWY-PVQAGDVLWMAPFVPQWYAA 240
++KEV +N Q +E Q RL S + P+Q G+ +W+ VP W+ A
Sbjct: 86 SLKEVGFNLAPPQEK--TIEEQDWVRLTQSQFSPIQIGERIWV---VPSWHDA 133
>sp|P28809|MMSR_PSEAE MmsAB operon regulatory protein OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mmsR
PE=4 SV=2
Length = 307
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 190 DFLNVKEVHYNQHGLLLL-EGQGIYRL--GDSW--YPVQAGDVLWMAPFVPQWYAA 240
D +E H ++H L+ EGQG+ R+ G++W Y V +GD+LW+ P + YAA
Sbjct: 58 DHRMSRERH-DEHLLIYCSEGQGLLRVREGEAWREYRVGSGDLLWLPPGMAHDYAA 112
>sp|Q8D8M2|FTSK_VIBVU DNA translocase FtsK OS=Vibrio vulnificus (strain CMCP6) GN=ftsK
PE=3 SV=2
Length = 985
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 22/135 (16%)
Query: 93 SAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS------ATLVVFERRYASLENHITE 146
S + + G S L + YLPP +H++R G+ VV + N+I E
Sbjct: 838 SRTILDQGGAESLLGMGDMLYLPPGSSHTIRVHGAFASDDDVHAVVNNWKARGKPNYIDE 897
Query: 147 QIVGSTDKQPLLETPGEVFQ----LRKLLPQAVPFDFNIHIMDFQPGDFLNVK---EVHY 199
I G + LL PGE + L L Q V H++ + G V+ ++ Y
Sbjct: 898 IISGEQGPESLL--PGEQMESDEDLDPLFDQVVE-----HVVQSRRGSVSGVQRRFKIGY 950
Query: 200 NQHGLLL--LEGQGI 212
N+ ++ LE QGI
Sbjct: 951 NRAARIVEQLEAQGI 965
>sp|P42346|MTOR_RAT Serine/threonine-protein kinase mTOR OS=Rattus norvegicus GN=Mtor
PE=1 SV=1
Length = 2549
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 18 LPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAY----LITPAMGSHFVMYLANMQEN 73
L F S + L +HVLS + + A+ L++ A+ S F +YL + +
Sbjct: 399 LAAFRPSAFTDTQYLQDTMNHVLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDI 458
Query: 74 ARSALPPHD--------VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE 125
R+ALPP D V+ V +ML A G + D L P A L
Sbjct: 459 IRAALPPKDFAHKRQKTVQVDATVFTCISMLARAMG--PGIQQDIKELLEPMLAVGLSPA 516
Query: 126 GSATLVVFERRYASLENHITEQIV 149
+A L R+ L+ I + ++
Sbjct: 517 LTAVLYDLSRQIPQLKKDIQDGLL 540
>sp|A7I0P7|RF2_CAMHC Peptide chain release factor 2 OS=Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=prfB
PE=3 SV=1
Length = 364
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 179 FNIHIMDFQPGDFLNVKEVHY-----NQHGLLLLEGQGIYRL 215
+ I I+DFQ GD +K+V++ N +G L +E GI+RL
Sbjct: 160 YKIEILDFQEGDEAGIKDVNFIVKGENAYGYLKVES-GIHRL 200
>sp|Q9JLN9|MTOR_MOUSE Serine/threonine-protein kinase mTOR OS=Mus musculus GN=Mtor PE=1
SV=2
Length = 2549
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 18 LPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAY----LITPAMGSHFVMYLANMQEN 73
L F S + L +HVLS + + A+ L++ A+ S F +YL + +
Sbjct: 399 LAAFRPSAFTDTQYLQDTMNHVLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDI 458
Query: 74 ARSALPPHD--------VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE 125
R+ALPP D V+ V +ML A G + D L P A L
Sbjct: 459 IRAALPPKDFAHKRQKTVQVDATVFTCISMLARAMG--PGIQQDIKELLEPMLAVGLSPA 516
Query: 126 GSATLVVFERRYASLENHITEQIV 149
+A L R+ L+ I + ++
Sbjct: 517 LTAVLYDLSRQIPQLKKDIQDGLL 540
>sp|P42345|MTOR_HUMAN Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1
SV=1
Length = 2549
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 18/146 (12%)
Query: 18 LPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAY----LITPAMGSHFVMYLANMQEN 73
L F S + L +HVLS + + A+ L++ A+ S F +YL + +
Sbjct: 399 LAAFRPSAFTDTQYLQDTMNHVLSCVKKEKERTAAFQALGLLSVAVRSEFKVYLPRVLDI 458
Query: 74 ARSALPPHD----------VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR 123
R+ALPP D V+ +F +ML A G + D L P A L
Sbjct: 459 IRAALPPKDFAHKRQKAMQVDATVFTC--ISMLARAMG--PGIQQDIKELLEPMLAVGLS 514
Query: 124 AEGSATLVVFERRYASLENHITEQIV 149
+A L R+ L+ I + ++
Sbjct: 515 PALTAVLYDLSRQIPQLKKDIQDGLL 540
>sp|Q87QP4|FTSK_VIBPA DNA translocase FtsK OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=ftsK PE=3 SV=1
Length = 1028
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 25/146 (17%)
Query: 85 RFIFVVQ---GSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS------ATLVVFER 135
R F V S + + G S L + YLPP +H++R G+ VV
Sbjct: 870 RVAFTVSTKTDSRTILDQGGAESLLGMGDMLYLPPGSSHTIRVHGAFASDDDVHAVVNNW 929
Query: 136 RYASLENHITEQIVGSTDKQPLLETPGEVF----QLRKLLPQAVPFDFNIHIMDFQPGDF 191
+ N+I E I G + LL PGE ++ L Q V H++ + G
Sbjct: 930 KARGKPNYIDEIISGDQGPESLL--PGEQMESDEEMDPLFDQVVE-----HVVQSRRGSV 982
Query: 192 LNVK---EVHYNQHGLLL--LEGQGI 212
V+ ++ YN+ ++ LE QGI
Sbjct: 983 SGVQRRFKIGYNRAARIVEQLEAQGI 1008
>sp|Q6NRS2|PQLC1_XENLA PQ-loop repeat-containing protein 1 OS=Xenopus laevis GN=pqlc1 PE=2
SV=1
Length = 250
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 85 RFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSL--RAEGSATLVVFERRYASLEN 142
RFI +Q T +G + L++DS P F L A + L+ + Y + +N
Sbjct: 124 RFIDFIQCVLAFTGVTGYITYLLLDS-----PLFVEILGFLAVFTEALLGVPQLYRNHQN 178
Query: 143 HITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNI 181
+ TE G + K L+ T G+ F+ + PF F+I
Sbjct: 179 YSTE---GMSIKMVLMWTSGDTFKSAYFVLNQAPFQFSI 214
>sp|Q84I33|FTSK_VIBCH DNA translocase FtsK OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=ftsK PE=3 SV=2
Length = 960
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 26/174 (14%)
Query: 58 AMGSHFVMYLANMQENARSALPPHDV-ERFIFVVQ---GSAMLTNASGVSSKLMVDSYTY 113
A G H ++ + + L ++ R F V S + + SG S L + Y
Sbjct: 774 AAGIHLILATQRPSVDVITGLIKANIPTRVAFTVSTKTDSRTILDQSGAESLLGMGDMLY 833
Query: 114 LPPNFAHSLRAEGS------ATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVF-- 165
LP +H++R G+ VV + N+I+E I G + LL PGE
Sbjct: 834 LPAGSSHTIRVHGAFASDDDVHAVVNNWKARGKPNYISEIIQGDHGPEALL--PGEQSES 891
Query: 166 --QLRKLLPQAVPFDFNIHIMDFQPGDFLNVK---EVHYNQHGLLL--LEGQGI 212
+L L Q V H+++ + G V+ ++ YN+ ++ LE QGI
Sbjct: 892 DEELDPLFDQVVE-----HVVETRRGSVSGVQRRFKIGYNRAARIVEQLEAQGI 940
>sp|A6Q718|RF2_SULNB Peptide chain release factor 2 OS=Sulfurovum sp. (strain NBC37-1)
GN=prfB PE=3 SV=1
Length = 364
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 179 FNIHIMDFQPGDFLNVKEVHY-----NQHGLLLLEGQGIYRL 215
F + ++D+QPG+ +K+V + N +G L +E GI+RL
Sbjct: 160 FKVEVLDYQPGEEAGIKDVSFIIKGENAYGYLKVEN-GIHRL 200
>sp|Q9M156|U72B1_ARATH UDP-glycosyltransferase 72B1 OS=Arabidopsis thaliana GN=UGT72B1
PE=1 SV=1
Length = 480
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 84 ERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG 126
+RF++V++ + + N+S S D T+LPP F + G
Sbjct: 298 QRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRG 340
>sp|B0JIT3|FABZ_MICAN 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
OS=Microcystis aeruginosa (strain NIES-843) GN=fabZ PE=3
SV=1
Length = 159
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 152 TDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPG-DFLNVKEVHYNQ 201
T+ +P+++T V ++R+LLP PF I+D+ PG + +K V N+
Sbjct: 9 TELEPVIKTTFTVEEIRQLLPHRYPFALVDRIIDYVPGQKAVGLKNVTINE 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,958,610
Number of Sequences: 539616
Number of extensions: 4297777
Number of successful extensions: 8424
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8417
Number of HSP's gapped (non-prelim): 19
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)