Query 025000
Match_columns 259
No_of_seqs 236 out of 1221
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:09:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03214 ura-cupin putative a 100.0 2.3E-69 5E-74 483.1 31.0 243 16-259 9-259 (260)
2 COG3257 GlxB Uncharacterized p 100.0 7.8E-64 1.7E-68 424.4 22.8 242 16-258 11-261 (264)
3 PRK11171 hypothetical protein; 100.0 7.7E-61 1.7E-65 429.5 31.5 243 16-259 14-264 (266)
4 TIGR03404 bicupin_oxalic bicup 99.9 2E-24 4.3E-29 201.8 24.2 189 62-252 66-323 (367)
5 PRK13290 ectC L-ectoine syntha 99.7 1.3E-16 2.7E-21 128.1 11.9 101 147-251 1-106 (125)
6 PRK13290 ectC L-ectoine syntha 99.6 5.9E-15 1.3E-19 118.4 12.8 84 52-136 24-109 (125)
7 PF07883 Cupin_2: Cupin domain 99.6 5.3E-15 1.2E-19 105.6 8.7 67 183-250 2-69 (71)
8 COG1917 Uncharacterized conser 99.6 3.1E-14 6.6E-19 114.5 11.3 87 166-253 29-117 (131)
9 PRK09943 DNA-binding transcrip 99.5 9.7E-14 2.1E-18 118.1 12.7 86 49-135 93-181 (185)
10 PF07883 Cupin_2: Cupin domain 99.5 5.9E-14 1.3E-18 100.2 7.8 66 67-133 2-70 (71)
11 COG0662 {ManC} Mannose-6-phosp 99.5 1.8E-13 3.8E-18 110.0 10.8 78 176-253 33-110 (127)
12 TIGR02272 gentisate_1_2 gentis 99.5 1.9E-12 4.2E-17 119.4 18.2 201 49-253 61-321 (335)
13 TIGR03214 ura-cupin putative a 99.4 2.6E-12 5.6E-17 115.2 14.0 93 161-253 37-133 (260)
14 PRK11171 hypothetical protein; 99.4 3.1E-12 6.8E-17 115.0 13.7 91 163-253 45-136 (266)
15 COG1917 Uncharacterized conser 99.4 7.6E-12 1.7E-16 100.5 11.4 66 58-124 38-104 (131)
16 PRK09943 DNA-binding transcrip 99.4 8.4E-12 1.8E-16 106.2 12.3 86 166-251 94-179 (185)
17 COG0662 {ManC} Mannose-6-phosp 99.3 1.1E-11 2.4E-16 99.5 11.5 73 60-133 33-106 (127)
18 TIGR01479 GMP_PMI mannose-1-ph 99.3 4.9E-12 1.1E-16 122.2 10.8 76 176-251 373-448 (468)
19 PRK15460 cpsB mannose-1-phosph 99.3 5.9E-12 1.3E-16 121.6 10.9 76 176-251 382-457 (478)
20 PRK15460 cpsB mannose-1-phosph 99.3 9.2E-12 2E-16 120.2 11.8 76 60-136 382-460 (478)
21 smart00835 Cupin_1 Cupin. This 99.3 2.5E-11 5.4E-16 99.5 11.9 77 177-254 28-111 (146)
22 PF14499 DUF4437: Domain of un 99.3 8.2E-11 1.8E-15 104.5 14.4 195 49-250 22-242 (251)
23 PF01050 MannoseP_isomer: Mann 99.3 2.5E-11 5.4E-16 100.4 10.0 74 177-250 61-134 (151)
24 PRK04190 glucose-6-phosphate i 99.3 5.5E-11 1.2E-15 101.9 12.0 82 170-251 59-153 (191)
25 TIGR01479 GMP_PMI mannose-1-ph 99.3 3.5E-11 7.7E-16 116.2 11.6 76 59-135 372-450 (468)
26 COG3837 Uncharacterized conser 99.2 6.9E-11 1.5E-15 96.9 8.8 80 56-136 34-120 (161)
27 COG4101 Predicted mannose-6-ph 99.2 1.2E-10 2.5E-15 91.3 9.1 80 59-141 41-127 (142)
28 smart00835 Cupin_1 Cupin. This 99.1 5.2E-10 1.1E-14 91.6 10.9 74 60-134 27-109 (146)
29 COG4101 Predicted mannose-6-ph 99.1 2.9E-10 6.3E-15 89.1 8.5 75 176-250 43-120 (142)
30 COG3837 Uncharacterized conser 99.1 4.2E-10 9E-15 92.3 9.1 87 171-257 33-123 (161)
31 PLN00212 glutelin; Provisional 99.1 3.7E-08 8.1E-13 95.2 22.6 74 178-253 347-427 (493)
32 TIGR03404 bicupin_oxalic bicup 99.1 1.2E-09 2.6E-14 102.5 11.8 89 48-136 228-325 (367)
33 PF02041 Auxin_BP: Auxin bindi 99.0 1.4E-09 3E-14 88.5 9.3 86 50-136 29-128 (167)
34 COG3435 Gentisate 1,2-dioxygen 99.0 5.6E-09 1.2E-13 93.8 12.4 202 50-254 73-334 (351)
35 PF02041 Auxin_BP: Auxin bindi 99.0 2.6E-09 5.7E-14 86.9 9.2 104 145-250 8-124 (167)
36 PF01050 MannoseP_isomer: Mann 98.9 1.4E-08 3E-13 84.1 10.5 73 60-133 60-135 (151)
37 PF00190 Cupin_1: Cupin; Inte 98.9 1.9E-08 4.2E-13 82.1 10.7 89 166-255 16-122 (144)
38 PF04962 KduI: KduI/IolB famil 98.9 2.7E-07 5.8E-12 82.9 18.8 181 51-238 13-229 (261)
39 TIGR03037 anthran_nbaC 3-hydro 98.8 2E-08 4.3E-13 83.4 9.7 68 71-138 36-106 (159)
40 PRK04190 glucose-6-phosphate i 98.8 6.8E-08 1.5E-12 82.9 12.3 74 60-134 65-154 (191)
41 PRK15457 ethanolamine utilizat 98.8 1.1E-07 2.3E-12 83.2 11.9 75 57-134 151-225 (233)
42 PRK13264 3-hydroxyanthranilate 98.8 4.6E-08 9.9E-13 82.5 9.3 66 71-136 42-110 (177)
43 PRK15457 ethanolamine utilizat 98.7 1.4E-07 3.1E-12 82.4 12.0 84 164-250 142-225 (233)
44 COG2140 Thermophilic glucose-6 98.7 4.6E-08 9.9E-13 84.3 8.6 68 182-250 83-158 (209)
45 PF06339 Ectoine_synth: Ectoin 98.7 1.2E-07 2.7E-12 75.2 10.2 102 147-251 1-106 (126)
46 PF12973 Cupin_7: ChrR Cupin-l 98.7 2.2E-07 4.8E-12 70.1 10.6 80 163-249 8-87 (91)
47 PF02311 AraC_binding: AraC-li 98.7 9.2E-08 2E-12 74.8 7.6 55 196-250 19-73 (136)
48 PF12973 Cupin_7: ChrR Cupin-l 98.7 2.1E-07 4.5E-12 70.3 9.1 80 48-132 9-88 (91)
49 PF11699 CENP-C_C: Mif2/CENP-C 98.6 4E-07 8.6E-12 68.2 10.0 71 62-133 11-84 (85)
50 PLN00212 glutelin; Provisional 98.6 2E-07 4.2E-12 90.3 10.2 90 166-256 64-186 (493)
51 COG2140 Thermophilic glucose-6 98.5 1.6E-06 3.6E-11 74.7 11.7 87 45-133 63-159 (209)
52 PF06249 EutQ: Ethanolamine ut 98.5 6.6E-07 1.4E-11 73.9 8.2 81 53-136 67-147 (152)
53 PF00190 Cupin_1: Cupin; Inte 98.5 1.4E-06 3E-11 71.1 9.7 76 61-136 32-120 (144)
54 PF05899 Cupin_3: Protein of u 98.4 7.1E-07 1.5E-11 65.1 6.6 63 62-126 6-68 (74)
55 PRK00924 5-keto-4-deoxyuronate 98.4 4.2E-05 9.2E-10 68.9 18.8 162 80-249 71-254 (276)
56 PF02311 AraC_binding: AraC-li 98.4 1.5E-06 3.3E-11 67.9 7.5 59 77-136 17-77 (136)
57 PRK13501 transcriptional activ 98.4 1.4E-06 3.1E-11 78.5 8.3 71 180-251 19-89 (290)
58 TIGR02272 gentisate_1_2 gentis 98.3 1.3E-06 2.9E-11 80.9 7.2 76 178-254 80-156 (335)
59 COG4766 EutQ Ethanolamine util 98.3 6.2E-06 1.3E-10 67.5 9.4 82 52-136 89-170 (176)
60 PF06339 Ectoine_synth: Ectoin 98.3 2E-05 4.3E-10 62.7 11.8 91 50-142 22-113 (126)
61 PF06249 EutQ: Ethanolamine ut 98.3 5E-06 1.1E-10 68.7 8.8 87 162-251 60-146 (152)
62 PF11699 CENP-C_C: Mif2/CENP-C 98.2 1.5E-05 3.3E-10 59.7 9.8 73 178-250 11-83 (85)
63 TIGR02451 anti_sig_ChrR anti-s 98.2 7.4E-06 1.6E-10 71.6 9.3 91 155-253 106-196 (215)
64 COG3257 GlxB Uncharacterized p 98.2 1.4E-05 2.9E-10 69.3 9.3 77 178-254 60-137 (264)
65 PF06560 GPI: Glucose-6-phosph 98.1 2.4E-05 5.3E-10 66.6 10.7 73 179-251 50-143 (182)
66 TIGR02451 anti_sig_ChrR anti-s 98.1 1.5E-05 3.2E-10 69.7 8.9 68 62-134 126-195 (215)
67 COG4766 EutQ Ethanolamine util 98.1 2.5E-05 5.3E-10 64.1 9.5 86 163-251 84-169 (176)
68 PRK13500 transcriptional activ 98.1 1.2E-05 2.7E-10 73.6 8.7 64 187-251 56-119 (312)
69 COG3718 IolB Uncharacterized e 98.1 0.0007 1.5E-08 59.4 18.7 168 65-239 31-239 (270)
70 PF03079 ARD: ARD/ARD' family; 98.1 2.5E-05 5.5E-10 65.1 9.1 55 195-249 87-146 (157)
71 PRK10296 DNA-binding transcrip 98.0 2.9E-05 6.3E-10 69.5 9.3 47 195-241 38-84 (278)
72 PRK13503 transcriptional activ 98.0 9.1E-06 2E-10 72.4 5.3 63 188-251 24-86 (278)
73 PRK13502 transcriptional activ 97.9 3.8E-05 8.2E-10 68.8 8.4 62 187-249 26-87 (282)
74 TIGR03037 anthran_nbaC 3-hydro 97.9 6.6E-05 1.4E-09 62.5 8.2 63 180-243 28-95 (159)
75 PRK10296 DNA-binding transcrip 97.9 0.00011 2.3E-09 65.8 10.3 70 62-133 23-93 (278)
76 PRK10371 DNA-binding transcrip 97.9 5.6E-05 1.2E-09 69.1 8.1 67 178-245 25-91 (302)
77 PRK13501 transcriptional activ 97.8 6.5E-05 1.4E-09 67.7 8.3 55 71-126 26-80 (290)
78 PRK13264 3-hydroxyanthranilate 97.8 9.1E-05 2E-09 62.6 8.2 54 187-241 42-99 (177)
79 TIGR00218 manA mannose-6-phosp 97.8 0.00026 5.7E-09 64.8 11.3 57 177-236 233-289 (302)
80 KOG2757 Mannose-6-phosphate is 97.8 0.00056 1.2E-08 63.5 13.3 137 104-251 250-405 (411)
81 PF06052 3-HAO: 3-hydroxyanthr 97.8 0.00018 3.9E-09 59.0 9.0 74 62-136 33-109 (151)
82 TIGR02297 HpaA 4-hydroxyphenyl 97.8 7.4E-05 1.6E-09 66.9 7.4 62 188-250 32-94 (287)
83 COG3450 Predicted enzyme of th 97.8 0.00015 3.2E-09 57.4 8.1 66 62-129 44-109 (116)
84 PRK15131 mannose-6-phosphate i 97.7 0.0011 2.3E-08 63.0 15.0 132 103-244 238-382 (389)
85 COG1482 ManA Phosphomannose is 97.7 0.00073 1.6E-08 62.0 13.0 128 102-240 158-301 (312)
86 PRK13500 transcriptional activ 97.7 0.00019 4E-09 65.8 8.9 54 72-126 57-110 (312)
87 PRK13502 transcriptional activ 97.6 0.00025 5.5E-09 63.4 8.6 55 71-126 26-80 (282)
88 PRK10371 DNA-binding transcrip 97.6 0.00022 4.8E-09 65.1 8.4 58 71-129 34-91 (302)
89 PF05899 Cupin_3: Protein of u 97.6 0.00036 7.9E-09 50.7 7.2 56 179-237 7-63 (74)
90 COG3435 Gentisate 1,2-dioxygen 97.5 0.00015 3.1E-09 65.8 5.8 67 182-249 95-162 (351)
91 PRK13503 transcriptional activ 97.5 0.00021 4.6E-09 63.6 5.7 51 74-125 26-76 (278)
92 PF03079 ARD: ARD/ARD' family; 97.5 0.00022 4.7E-09 59.5 5.3 48 77-124 86-137 (157)
93 PLN02288 mannose-6-phosphate i 97.4 0.0013 2.7E-08 62.6 10.5 128 103-235 252-391 (394)
94 TIGR02297 HpaA 4-hydroxyphenyl 97.4 0.0006 1.3E-08 61.0 7.4 49 75-124 35-84 (287)
95 COG1791 Uncharacterized conser 97.3 0.00039 8.5E-09 58.1 5.3 49 195-243 90-143 (181)
96 PF05726 Pirin_C: Pirin C-term 97.2 0.0017 3.6E-08 50.2 7.6 71 66-141 2-74 (104)
97 PF14499 DUF4437: Domain of un 97.2 0.0017 3.7E-08 58.0 8.4 96 151-252 4-109 (251)
98 COG4297 Uncharacterized protei 97.2 0.00065 1.4E-08 55.0 5.1 49 189-237 52-104 (163)
99 PF05523 FdtA: WxcM-like, C-te 97.2 0.0014 3.1E-08 52.9 6.9 70 70-139 40-116 (131)
100 COG1741 Pirin-related protein 97.1 0.07 1.5E-06 48.5 18.1 174 68-251 49-240 (276)
101 PF05962 HutD: HutD; InterPro 97.1 0.052 1.1E-06 46.3 16.3 158 48-248 16-181 (184)
102 COG1791 Uncharacterized conser 97.0 0.0034 7.3E-08 52.6 7.7 68 78-146 90-161 (181)
103 PF05523 FdtA: WxcM-like, C-te 96.9 0.0045 9.7E-08 50.0 7.7 75 178-253 32-111 (131)
104 PRK10572 DNA-binding transcrip 96.8 0.0035 7.6E-08 56.3 7.0 42 202-243 51-92 (290)
105 PF06560 GPI: Glucose-6-phosph 96.7 0.029 6.4E-07 47.8 11.0 64 63-126 50-134 (182)
106 PF05995 CDO_I: Cysteine dioxy 96.6 0.011 2.5E-07 49.9 8.5 65 60-124 72-149 (175)
107 PRK10572 DNA-binding transcrip 96.5 0.015 3.3E-07 52.2 9.0 43 81-124 47-89 (290)
108 COG4297 Uncharacterized protei 96.4 0.0096 2.1E-07 48.3 6.0 57 81-139 62-120 (163)
109 PF04209 HgmA: homogentisate 1 96.3 0.05 1.1E-06 52.1 11.6 54 80-134 143-196 (424)
110 PF05726 Pirin_C: Pirin C-term 96.3 0.013 2.9E-07 45.1 6.4 66 183-251 3-68 (104)
111 PF12852 Cupin_6: Cupin 96.3 0.026 5.6E-07 47.6 8.7 41 83-124 35-77 (186)
112 PF02678 Pirin: Pirin; InterP 96.3 0.023 5.1E-07 44.3 7.6 61 189-249 39-103 (107)
113 KOG2757 Mannose-6-phosphate is 96.2 0.035 7.6E-07 51.8 9.5 72 60-133 330-402 (411)
114 KOG2107 Uncharacterized conser 96.1 0.01 2.2E-07 49.5 5.1 63 181-243 65-141 (179)
115 PF05118 Asp_Arg_Hydrox: Aspar 96.0 0.036 7.7E-07 46.3 7.8 77 178-256 79-161 (163)
116 KOG3995 3-hydroxyanthranilate 95.5 0.44 9.6E-06 41.5 12.8 178 62-242 33-269 (279)
117 PF04962 KduI: KduI/IolB famil 95.5 0.1 2.2E-06 47.0 9.3 81 169-252 16-106 (261)
118 PF12852 Cupin_6: Cupin 95.5 0.024 5.2E-07 47.8 5.0 42 202-243 37-80 (186)
119 COG3450 Predicted enzyme of th 95.5 0.13 2.9E-06 40.7 8.7 52 181-235 47-99 (116)
120 PLN02288 mannose-6-phosphate i 95.4 0.047 1E-06 52.0 7.1 59 60-119 331-391 (394)
121 PRK10579 hypothetical protein; 95.4 0.099 2.2E-06 39.8 7.4 61 68-131 28-90 (94)
122 PRK09685 DNA-binding transcrip 95.4 0.048 1E-06 49.1 6.8 44 202-245 73-116 (302)
123 PF06865 DUF1255: Protein of u 95.4 0.12 2.7E-06 39.3 7.8 63 67-132 27-91 (94)
124 KOG2107 Uncharacterized conser 95.3 0.038 8.2E-07 46.2 5.2 48 77-124 87-138 (179)
125 COG3717 KduI 5-keto 4-deoxyuro 95.2 0.22 4.8E-06 44.0 10.1 117 82-205 75-206 (278)
126 PLN02658 homogentisate 1,2-dio 95.2 0.15 3.2E-06 48.9 9.6 65 71-136 132-200 (435)
127 PRK09685 DNA-binding transcrip 95.2 0.17 3.7E-06 45.5 9.8 49 82-131 70-118 (302)
128 PF05118 Asp_Arg_Hydrox: Aspar 95.1 0.067 1.5E-06 44.6 6.4 77 62-139 79-162 (163)
129 TIGR00218 manA mannose-6-phosp 95.0 0.2 4.2E-06 45.9 9.7 69 60-132 232-300 (302)
130 COG1482 ManA Phosphomannose is 94.9 0.23 5.1E-06 45.8 9.8 64 58-124 237-301 (312)
131 PF14525 AraC_binding_2: AraC- 94.8 0.13 2.9E-06 41.6 7.3 55 81-136 53-107 (172)
132 TIGR01015 hmgA homogentisate 1 94.8 0.22 4.8E-06 47.7 9.5 65 71-136 133-200 (429)
133 PRK05341 homogentisate 1,2-dio 94.7 0.23 5.1E-06 47.6 9.6 64 71-135 139-206 (438)
134 PRK15131 mannose-6-phosphate i 94.7 0.19 4.1E-06 47.9 9.0 60 61-123 319-378 (389)
135 PF06052 3-HAO: 3-hydroxyanthr 93.9 0.13 2.8E-06 42.4 5.2 55 187-242 41-99 (151)
136 PF08007 Cupin_4: Cupin superf 93.3 0.22 4.8E-06 45.9 6.5 61 186-248 120-205 (319)
137 PF02373 JmjC: JmjC domain, hy 93.0 0.11 2.4E-06 39.7 3.5 27 218-244 81-107 (114)
138 PF11142 DUF2917: Protein of u 92.7 0.25 5.5E-06 34.7 4.6 54 68-123 2-57 (63)
139 PF14525 AraC_binding_2: AraC- 92.0 1.4 3E-05 35.5 9.0 42 203-244 58-99 (172)
140 COG3508 HmgA Homogentisate 1,2 92.0 0.7 1.5E-05 43.2 7.7 54 80-134 143-197 (427)
141 COG1741 Pirin-related protein 91.9 0.42 9.1E-06 43.4 6.1 68 181-248 46-118 (276)
142 PF09313 DUF1971: Domain of un 91.6 1.9 4.2E-05 32.0 8.4 51 81-131 23-80 (82)
143 PRK11396 hypothetical protein; 91.4 5.4 0.00012 34.3 12.0 82 50-134 21-109 (191)
144 PF08007 Cupin_4: Cupin superf 91.3 2 4.3E-05 39.7 10.0 62 65-126 115-200 (319)
145 COG1898 RfbC dTDP-4-dehydrorha 91.3 0.79 1.7E-05 38.8 6.7 62 188-250 54-129 (173)
146 PRK00924 5-keto-4-deoxyuronate 91.2 0.96 2.1E-05 41.1 7.7 50 202-251 76-127 (276)
147 PF06865 DUF1255: Protein of u 90.7 1.9 4.2E-05 32.8 7.7 81 163-251 10-92 (94)
148 COG5553 Predicted metal-depend 90.7 0.87 1.9E-05 38.1 6.3 74 168-244 62-147 (191)
149 PF05995 CDO_I: Cysteine dioxy 90.3 2.6 5.5E-05 35.5 9.1 78 167-247 65-157 (175)
150 PF07847 DUF1637: Protein of u 90.0 0.92 2E-05 39.3 6.2 70 178-249 43-138 (200)
151 PRK10579 hypothetical protein; 90.0 2.2 4.7E-05 32.5 7.4 80 163-251 10-92 (94)
152 PF13621 Cupin_8: Cupin-like d 89.4 0.39 8.5E-06 41.5 3.6 28 218-245 209-236 (251)
153 TIGR01221 rmlC dTDP-4-dehydror 89.3 2.8 6E-05 35.6 8.5 64 187-251 52-130 (176)
154 COG3123 Uncharacterized protei 89.3 1.5 3.2E-05 32.8 5.9 58 69-128 29-87 (94)
155 PF13621 Cupin_8: Cupin-like d 86.9 1 2.2E-05 38.8 4.6 23 103-125 210-232 (251)
156 COG1898 RfbC dTDP-4-dehydrorha 86.7 2.7 5.8E-05 35.7 6.8 69 72-140 54-138 (173)
157 TIGR01221 rmlC dTDP-4-dehydror 86.7 2.4 5.1E-05 36.0 6.5 69 71-139 52-137 (176)
158 COG5553 Predicted metal-depend 86.2 5.5 0.00012 33.4 8.1 86 62-150 72-168 (191)
159 PF02678 Pirin: Pirin; InterP 86.1 2.8 6.1E-05 32.6 6.1 57 75-131 41-103 (107)
160 PF05962 HutD: HutD; InterPro 86.0 0.59 1.3E-05 39.8 2.5 51 81-134 133-183 (184)
161 COG2850 Uncharacterized conser 85.6 1.6 3.5E-05 41.1 5.3 59 69-128 125-205 (383)
162 PF00908 dTDP_sugar_isom: dTDP 84.8 7 0.00015 33.1 8.5 58 187-244 51-124 (176)
163 PRK15186 AraC family transcrip 83.5 2.7 5.8E-05 38.4 5.8 42 83-124 38-79 (291)
164 PF06719 AraC_N: AraC-type tra 83.4 8.1 0.00018 31.7 8.2 43 81-124 21-63 (155)
165 COG3806 ChrR Transcriptional a 83.3 5.1 0.00011 34.7 6.9 68 61-133 126-195 (216)
166 PF00908 dTDP_sugar_isom: dTDP 82.5 5.5 0.00012 33.7 6.9 58 82-139 66-137 (176)
167 PHA00672 hypothetical protein 81.8 8.4 0.00018 31.0 7.2 70 179-250 47-116 (152)
168 COG3718 IolB Uncharacterized e 81.5 14 0.0003 33.0 9.1 87 166-254 15-112 (270)
169 PF09313 DUF1971: Domain of un 80.9 9.5 0.00021 28.2 6.9 47 202-249 27-80 (82)
170 PF02373 JmjC: JmjC domain, hy 80.7 4.7 0.0001 30.5 5.5 25 103-127 82-106 (114)
171 PF01238 PMI_typeI: Phosphoman 80.3 6 0.00013 37.4 7.1 103 104-217 252-372 (373)
172 PHA00672 hypothetical protein 80.0 13 0.00027 30.1 7.6 64 61-126 45-108 (152)
173 PF04209 HgmA: homogentisate 1 78.3 11 0.00023 36.5 8.0 75 177-255 123-199 (424)
174 PRK09391 fixK transcriptional 77.5 15 0.00031 31.8 8.2 71 177-248 34-110 (230)
175 PHA02984 hypothetical protein; 76.1 12 0.00025 33.9 7.1 51 85-135 95-149 (286)
176 PF07385 DUF1498: Protein of u 75.3 20 0.00043 31.6 8.2 68 177-244 85-180 (225)
177 PRK11753 DNA-binding transcrip 74.5 25 0.00053 29.4 8.7 68 67-134 22-100 (211)
178 PF00027 cNMP_binding: Cyclic 74.4 7.7 0.00017 27.2 4.8 54 81-134 15-78 (91)
179 PRK10202 ebgC cryptic beta-D-g 72.5 44 0.00096 27.3 9.4 31 103-133 107-137 (149)
180 PF07385 DUF1498: Protein of u 72.5 38 0.00082 29.9 9.3 40 85-125 138-177 (225)
181 COG3123 Uncharacterized protei 71.9 15 0.00033 27.4 5.7 50 199-250 40-91 (94)
182 PRK09391 fixK transcriptional 71.4 29 0.00063 30.0 8.5 72 63-134 36-114 (230)
183 PF00027 cNMP_binding: Cyclic 70.7 8.6 0.00019 27.0 4.3 46 185-231 3-54 (91)
184 cd00038 CAP_ED effector domain 70.0 12 0.00025 27.0 5.0 50 180-230 16-71 (115)
185 cd06919 Asp_decarbox Aspartate 69.7 3.1 6.6E-05 32.6 1.7 45 181-235 43-91 (111)
186 TIGR00223 panD L-aspartate-alp 69.5 3 6.6E-05 33.4 1.7 45 181-235 44-92 (126)
187 PRK11753 DNA-binding transcrip 69.5 24 0.00052 29.5 7.5 50 180-230 19-74 (211)
188 cd00038 CAP_ED effector domain 68.7 30 0.00066 24.7 7.1 67 67-134 19-96 (115)
189 PF04622 ERG2_Sigma1R: ERG2 an 68.0 28 0.00061 30.5 7.6 58 80-138 116-175 (216)
190 PRK00364 groES co-chaperonin G 67.5 19 0.00042 27.2 5.7 48 202-252 37-86 (95)
191 COG3822 ABC-type sugar transpo 66.9 10 0.00022 32.7 4.5 67 177-244 84-179 (225)
192 PRK05449 aspartate alpha-decar 66.9 3.7 8.1E-05 32.9 1.8 46 180-235 43-92 (126)
193 PF06719 AraC_N: AraC-type tra 66.6 36 0.00077 27.8 7.7 55 197-251 20-77 (155)
194 PF00166 Cpn10: Chaperonin 10 65.7 9.8 0.00021 28.6 3.8 52 202-254 36-89 (93)
195 PF07847 DUF1637: Protein of u 65.0 28 0.00061 30.1 6.9 38 61-98 42-80 (200)
196 KOG1356 Putative transcription 64.8 2.5 5.5E-05 43.6 0.5 28 214-241 795-822 (889)
197 COG3806 ChrR Transcriptional a 64.2 28 0.00061 30.2 6.7 62 169-237 120-181 (216)
198 PF11142 DUF2917: Protein of u 63.5 23 0.00049 24.8 5.1 56 183-240 1-58 (63)
199 COG3758 Uncharacterized protei 63.0 65 0.0014 27.8 8.6 75 48-123 22-102 (193)
200 PHA02890 hypothetical protein; 62.7 36 0.00077 30.7 7.2 48 86-134 95-145 (278)
201 COG2850 Uncharacterized conser 62.2 13 0.00029 35.1 4.7 60 177-241 119-202 (383)
202 COG3822 ABC-type sugar transpo 61.8 16 0.00034 31.6 4.6 26 101-126 152-177 (225)
203 COG3717 KduI 5-keto 4-deoxyuro 59.4 30 0.00066 30.9 6.1 47 204-250 80-128 (278)
204 PHA02984 hypothetical protein; 58.9 23 0.0005 32.1 5.4 50 205-254 98-161 (286)
205 PRK11161 fumarate/nitrate redu 57.6 75 0.0016 27.1 8.5 66 69-134 41-115 (235)
206 TIGR02466 conserved hypothetic 57.1 52 0.0011 28.4 7.3 68 183-251 100-195 (201)
207 smart00100 cNMP Cyclic nucleot 56.7 34 0.00074 24.5 5.4 50 180-230 16-71 (120)
208 PHA02890 hypothetical protein; 53.5 37 0.0008 30.6 5.8 50 205-254 97-158 (278)
209 COG2731 EbgC Beta-galactosidas 52.7 24 0.00052 29.3 4.3 38 216-253 110-149 (154)
210 PRK05341 homogentisate 1,2-dio 52.2 51 0.0011 32.0 6.9 52 199-251 153-204 (438)
211 PRK13918 CRP/FNR family transc 51.6 74 0.0016 26.3 7.3 53 82-134 25-86 (202)
212 PRK13918 CRP/FNR family transc 50.7 37 0.00079 28.2 5.3 49 180-229 5-61 (202)
213 PRK15186 AraC family transcrip 49.8 35 0.00076 31.1 5.3 42 203-244 41-83 (291)
214 PF13640 2OG-FeII_Oxy_3: 2OG-F 49.1 37 0.00081 24.9 4.6 29 222-250 66-95 (100)
215 cd00320 cpn10 Chaperonin 10 Kd 48.2 44 0.00096 25.1 4.8 48 202-250 36-85 (93)
216 TIGR01015 hmgA homogentisate 1 47.9 63 0.0014 31.3 6.8 52 199-252 147-198 (429)
217 cd04867 TGS_YchF_C TGS_YchF_C: 47.6 7.3 0.00016 29.0 0.4 24 207-230 58-81 (83)
218 KOG1356 Putative transcription 44.9 8 0.00017 40.1 0.3 44 80-124 773-821 (889)
219 PRK10402 DNA-binding transcrip 44.6 1.6E+02 0.0034 25.1 8.4 66 69-134 35-110 (226)
220 PF08452 DNAP_B_exo_N: DNA pol 43.3 12 0.00025 20.6 0.7 17 233-249 4-20 (22)
221 PF05986 ADAM_spacer1: ADAM-TS 43.0 86 0.0019 24.3 5.9 47 181-227 17-64 (114)
222 PF04074 DUF386: Domain of unk 42.9 42 0.00091 27.3 4.3 35 218-252 113-149 (153)
223 PRK10202 ebgC cryptic beta-D-g 41.6 40 0.00086 27.6 3.9 35 216-252 104-138 (149)
224 PF00829 Ribosomal_L21p: Ribos 41.5 29 0.00064 26.3 2.9 23 211-233 3-25 (96)
225 KOG3706 Uncharacterized conser 41.3 23 0.0005 34.8 2.8 70 70-139 323-419 (629)
226 PLN02868 acyl-CoA thioesterase 41.3 1.2E+02 0.0026 28.8 7.7 51 179-230 29-84 (413)
227 PRK05467 Fe(II)-dependent oxyg 40.8 69 0.0015 28.2 5.5 41 92-132 130-172 (226)
228 TIGR03697 NtcA_cyano global ni 40.4 1.8E+02 0.0038 23.7 7.8 53 82-134 10-74 (193)
229 PLN02658 homogentisate 1,2-dio 40.1 1E+02 0.0022 30.0 6.9 72 178-252 125-198 (435)
230 COG2731 EbgC Beta-galactosidas 40.0 55 0.0012 27.2 4.5 34 101-134 111-148 (154)
231 PRK05573 rplU 50S ribosomal pr 37.5 46 0.001 25.7 3.5 22 211-232 3-24 (103)
232 PRK12335 tellurite resistance 37.3 1.1E+02 0.0023 27.5 6.4 58 72-129 20-86 (287)
233 PF04831 Popeye: Popeye protei 37.3 1.2E+02 0.0025 25.3 6.0 72 181-252 28-108 (153)
234 PRK12335 tellurite resistance 37.1 70 0.0015 28.7 5.2 55 188-242 20-82 (287)
235 TIGR00061 L21 ribosomal protei 37.0 47 0.001 25.6 3.4 21 211-231 2-22 (101)
236 COG0664 Crp cAMP-binding prote 36.9 92 0.002 25.3 5.6 68 67-134 25-102 (214)
237 PRK11396 hypothetical protein; 36.7 2.8E+02 0.006 23.9 10.7 98 152-251 6-111 (191)
238 KOG1686 Mitochondrial/chloropl 36.0 46 0.001 27.3 3.3 35 207-244 24-58 (151)
239 PRK10402 DNA-binding transcrip 35.9 1E+02 0.0022 26.4 5.8 49 181-230 31-85 (226)
240 PF10949 DUF2777: Protein of u 35.8 57 0.0012 28.0 4.1 39 195-235 52-90 (185)
241 PF06071 YchF-GTPase_C: Protei 35.4 5.4 0.00012 29.8 -1.9 24 208-231 59-82 (84)
242 PLN02868 acyl-CoA thioesterase 34.8 93 0.002 29.5 5.9 67 67-133 33-106 (413)
243 KOG0126 Predicted RNA-binding 34.4 72 0.0016 27.6 4.4 47 208-254 33-87 (219)
244 PF02261 Asp_decarbox: Asparta 33.0 6.9 0.00015 30.9 -1.8 46 180-235 43-92 (116)
245 COG3508 HmgA Homogentisate 1,2 32.7 1.7E+02 0.0036 27.9 6.8 46 199-244 145-190 (427)
246 PF05721 PhyH: Phytanoyl-CoA d 32.2 37 0.00081 27.6 2.4 23 218-240 180-202 (211)
247 PF01238 PMI_typeI: Phosphoman 32.1 23 0.0005 33.5 1.2 22 219-240 251-272 (373)
248 cd05792 S1_eIF1AD_like S1_eIF1 31.8 24 0.00053 25.9 1.1 32 219-253 36-67 (78)
249 PRK09392 ftrB transcriptional 31.8 2.6E+02 0.0057 23.7 7.8 69 67-135 32-109 (236)
250 COG3615 TehB Uncharacterized p 29.8 1.8E+02 0.0039 22.3 5.4 52 81-133 34-95 (99)
251 PF04831 Popeye: Popeye protei 29.2 1.2E+02 0.0025 25.3 4.7 68 66-134 29-108 (153)
252 PF12851 Tet_JBP: Oxygenase do 29.1 1E+02 0.0022 25.7 4.6 36 216-251 126-168 (171)
253 PRK11161 fumarate/nitrate redu 29.0 1.1E+02 0.0023 26.1 4.8 46 183-229 39-90 (235)
254 TIGR02466 conserved hypothetic 28.9 1.7E+02 0.0037 25.2 6.0 69 64-132 97-194 (201)
255 PRK04980 hypothetical protein; 28.8 51 0.0011 25.5 2.4 51 205-255 14-66 (102)
256 KOG4064 Cysteine dioxygenase C 28.5 69 0.0015 26.8 3.2 77 61-137 70-163 (196)
257 COG3128 PiuC Uncharacterized i 28.4 68 0.0015 27.8 3.3 37 100-136 142-182 (229)
258 COG0234 GroS Co-chaperonin Gro 28.1 1.3E+02 0.0028 23.1 4.4 42 202-243 37-80 (96)
259 COG0853 PanD Aspartate 1-decar 28.0 26 0.00056 28.0 0.7 48 179-235 41-91 (126)
260 COG0664 Crp cAMP-binding prote 27.1 1.1E+02 0.0024 24.8 4.5 52 179-231 21-78 (214)
261 KOG0501 K+-channel KCNQ [Inorg 27.0 97 0.0021 31.5 4.5 31 81-112 587-618 (971)
262 KOG3995 3-hydroxyanthranilate 27.0 4.1E+02 0.0089 23.5 7.8 46 77-124 221-266 (279)
263 CHL00075 rpl21 ribosomal prote 26.8 87 0.0019 24.4 3.4 21 211-231 5-25 (108)
264 COG3145 AlkB Alkylated DNA rep 26.6 87 0.0019 27.0 3.7 56 183-239 110-178 (194)
265 TIGR00092 GTP-binding protein 26.6 35 0.00077 32.3 1.4 27 207-233 341-367 (368)
266 PF13759 2OG-FeII_Oxy_5: Putat 26.0 1.2E+02 0.0025 22.6 4.0 25 218-242 66-90 (101)
267 KOG0498 K+-channel ERG and rel 25.2 90 0.0019 32.4 4.1 58 71-131 448-519 (727)
268 KOG0498 K+-channel ERG and rel 24.6 95 0.0021 32.2 4.1 47 181-228 442-493 (727)
269 COG2013 Uncharacterized conser 24.5 4.9E+02 0.011 22.9 16.0 35 205-239 135-173 (227)
270 PRK09601 GTP-binding protein Y 23.9 48 0.001 31.4 1.8 53 180-233 290-363 (364)
271 PF13510 Fer2_4: 2Fe-2S iron-s 23.5 58 0.0013 23.7 1.8 20 93-113 3-22 (82)
272 TIGR02408 ectoine_ThpD ectoine 22.7 78 0.0017 28.4 2.9 36 219-254 212-250 (277)
273 TIGR02988 YaaA_near_RecF S4 do 22.6 73 0.0016 21.4 2.1 20 211-230 34-58 (59)
274 TIGR00022 uncharacterized prot 21.5 92 0.002 25.1 2.8 16 83-98 69-84 (142)
275 PRK05573 rplU 50S ribosomal pr 21.2 1.4E+02 0.0031 22.9 3.6 21 94-115 3-23 (103)
276 PHA02664 hypothetical protein; 20.9 2.1E+02 0.0045 27.0 5.1 58 83-142 101-176 (534)
277 PF01479 S4: S4 domain; Inter 20.9 38 0.00083 21.6 0.3 18 211-228 26-48 (48)
278 KOG1113 cAMP-dependent protein 20.8 72 0.0016 30.1 2.2 45 68-112 266-311 (368)
279 PRK13450 atpC F0F1 ATP synthas 20.7 3.4E+02 0.0073 21.6 5.9 10 31-40 7-16 (132)
280 PF13759 2OG-FeII_Oxy_5: Putat 20.5 1.5E+02 0.0033 22.0 3.7 29 104-132 68-98 (101)
No 1
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=100.00 E-value=2.3e-69 Score=483.13 Aligned_cols=243 Identities=35% Similarity=0.626 Sum_probs=228.8
Q ss_pred ccCCCCceeeeeeceEEECCCCceeccCCCCCcceEEEEecCCCC--CcEEEEEEEecCCCcCCCC-C-CCceEEEEEEE
Q 025000 16 QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALP-P-HDVERFIFVVQ 91 (259)
Q Consensus 16 ~~~~~~tR~~~~~~~avi~pe~~v~~~lp~~~~~~~~~l~sp~~g--~~f~~~~~~l~Pg~~~~~h-~-~~~Eef~yVl~ 91 (259)
+..+..|||+++++||+|+|++.+.+.+|+|++++.++|++|..| +.|++++++++||+....+ . .+.|||+||++
T Consensus 9 ~~~~~~~r~~~~~~~a~i~p~~~~~~~vp~~~~~~~~~l~~P~~g~~~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~ 88 (260)
T TIGR03214 9 QKQLLTTRAVVHGNYAVITPDGLVSNIVPGFENTDIWILSRPKLGFAATFVQYIVEVHPGGGNTTGFGGEGIETFLFVIS 88 (260)
T ss_pred hhhcccceEEEEcceEEECCcceecccCCCCcccEEEEEcCCCCCCCCcEEEEEEEECCCCcCCCCCCCCceEEEEEEEe
Confidence 566788999999999999999999999999999999999999998 8999999999999876443 3 45599999999
Q ss_pred CEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCC-CCcceeeccCCCCCCcccCC-ceEEE
Q 025000 92 GSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLEN-HITEQIVGSTDKQPLLETPG-EVFQL 167 (259)
Q Consensus 92 G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g-~~p~~~v~~~~di~~~~~~g-~~~~~ 167 (259)
|++++++ +|+++.|++||++|||++.+|+++| +++|+++|+.|+|+|++| .+|.+++++++|++..+++| +++.+
T Consensus 89 G~l~v~~-~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~k~y~~~~g~~~~~~vvg~~~dv~~~~~~g~~~~~~ 167 (260)
T TIGR03214 89 GEVNVTA-EGETHELREGGYAYLPPGSKWTLANAQAEDARFFLYKKRYQPVEGLHAPELVVGNEKDIEPEPYEGMDDVIL 167 (260)
T ss_pred CEEEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEeeeEEcCCCCCCCeeecCHHHCCccccCCCCcEEE
Confidence 9999999 9999999999999999999999999 669999999999999999 78999999999999999977 77788
Q ss_pred EEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEE
Q 025000 168 RKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR 247 (259)
Q Consensus 168 ~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~ 247 (259)
+.|+|++.+++++|++++|+||+++|+||||+|||++|||+|+|+|++||+|++|++||+|||+|||+|+++|+|+++++
T Consensus 168 ~~llp~~~~~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~ 247 (260)
T TIGR03214 168 TTLLPKELAFDMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFR 247 (260)
T ss_pred EEeCchhcCCCcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCEEEEecCCCEEEECCCCCEEEEecCCCcEE
Confidence 87668788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCC
Q 025000 248 YLLYKDVNRNPL 259 (259)
Q Consensus 248 fi~~k~~nr~~~ 259 (259)
||+||||||||.
T Consensus 248 ~l~ykd~nr~~~ 259 (260)
T TIGR03214 248 YLLYKDMNRHVK 259 (260)
T ss_pred EEEEccccCCCC
Confidence 999999999974
No 2
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=100.00 E-value=7.8e-64 Score=424.38 Aligned_cols=242 Identities=35% Similarity=0.623 Sum_probs=230.2
Q ss_pred ccCCCCceeeeeeceEEECCCCc-eeccCCCCCcceEEEEecCCCC--CcEEEEEEEecCCCcCCCC--CCCceEEEEEE
Q 025000 16 QDLPGFTRSVYKRDHALITPESH-VLSPLPEWTNTLGAYLITPAMG--SHFVMYLANMQENARSALP--PHDVERFIFVV 90 (259)
Q Consensus 16 ~~~~~~tR~~~~~~~avi~pe~~-v~~~lp~~~~~~~~~l~sp~~g--~~f~~~~~~l~Pg~~~~~h--~~~~Eef~yVl 90 (259)
++.+..+||.++..||+|++... |.+.||.|++++.|++++|..| +.|+++++++.|++++... ..+.|.|+||+
T Consensus 11 q~~Ll~~RA~f~~ayavIpk~~~iVts~Lp~w~~tr~wilsrP~~Gf~~tF~qyive~~p~GGs~~~e~d~~ae~~lfVv 90 (264)
T COG3257 11 QTDLLANRAIFKEAYAVIPKGVMIVTSILPFWENTRAWILSRPLSGFAATFVQYIVELHPNGGSQRPEGDEGAETFLFVV 90 (264)
T ss_pred hhhhhhchhhhccccEEecCCcEEEEeecCCCCCceEEEEeccccchhhhhhhheEEECCCCCCCCCCCCCcceEEEEEE
Confidence 78889999999999999999875 8999999999999999999987 8999999999999977544 36889999999
Q ss_pred ECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCCC-CcceeeccCCCCCCcccCC-ceEE
Q 025000 91 QGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVFQ 166 (259)
Q Consensus 91 ~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g~-~p~~~v~~~~di~~~~~~g-~~~~ 166 (259)
+|++++.+ +|+++.|++|+++|+|||..|+++| .+++|+.|++|+|++.+|. +|+.+++|++|++..+++| +++.
T Consensus 91 ~Ge~tv~~-~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk~Y~~VdG~~~P~~~~~Ne~ei~~~~m~gtdg~~ 169 (264)
T COG3257 91 SGEITVKA-EGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRKRYQPVEGVQAPELVSGNESEIEPSPMEGTDGVI 169 (264)
T ss_pred eeeEEEEE-cCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEEeecceeecCccCCcceecChhhCCCCCCCCCCCeE
Confidence 99999999 9999999999999999999999999 5689999999999999997 8999999999999999988 6666
Q ss_pred EEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccE
Q 025000 167 LRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRT 246 (259)
Q Consensus 167 ~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~ 246 (259)
...++|+|+++||+|++++|+||++||+.|+|+|||++|||||+|+|+||..|+||++||+|||.++|||++.+.|...+
T Consensus 170 attv~P~d~r~Dmhv~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn~dwv~V~aGD~mwm~A~cpQacyagG~g~f 249 (264)
T COG3257 170 ATTVLPKELRFDMHVHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLNNNWVPVEAGDYIWMGAYCPQACYAGGRGAF 249 (264)
T ss_pred EEeeCccccCcceEEEEEEecCCcccchhhhhhhhcceEEEecceEEeecCceEEeecccEEEeeccChhhhccCCCCce
Confidence 66689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCC
Q 025000 247 RYLLYKDVNRNP 258 (259)
Q Consensus 247 ~fi~~k~~nr~~ 258 (259)
+||+|||||||+
T Consensus 250 rYLlyKDvNRh~ 261 (264)
T COG3257 250 RYLLYKDVNRHV 261 (264)
T ss_pred EEEEEecccccc
Confidence 999999999997
No 3
>PRK11171 hypothetical protein; Provisional
Probab=100.00 E-value=7.7e-61 Score=429.54 Aligned_cols=243 Identities=37% Similarity=0.654 Sum_probs=226.8
Q ss_pred ccCCCCceeeeeeceEEECCCCceeccCCCCCcceEEEEecCCCCCcEEEEEEEecCCCcCCCC--CCCceEEEEEEECE
Q 025000 16 QDLPGFTRSVYKRDHALITPESHVLSPLPEWTNTLGAYLITPAMGSHFVMYLANMQENARSALP--PHDVERFIFVVQGS 93 (259)
Q Consensus 16 ~~~~~~tR~~~~~~~avi~pe~~v~~~lp~~~~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h--~~~~Eef~yVl~G~ 93 (259)
++.+++|||+++++|++++|+++|.+.||+|.++..++|++|..++.|++++++++||++...+ +++.||++||++|+
T Consensus 14 ~~~~~~~r~~~~~~~a~~~p~~~v~~~lp~~~~~~~~~L~~~~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~ 93 (266)
T PRK11171 14 QTDLLTTRAVVTEAYAVIPPDDIVTSVLPGWENTRAWVLARPGLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGE 93 (266)
T ss_pred cccccccceEEecCeEEECCcCEEeecCCCCCCeEEEEEeCCCCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCE
Confidence 4788999999999999999999999999999999999999998889999999999999876544 34679999999999
Q ss_pred EEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEeccccCCC-CcceeeccCCCCCCcccCC-ceEEEEE
Q 025000 94 AMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERRYASLENH-ITEQIVGSTDKQPLLETPG-EVFQLRK 169 (259)
Q Consensus 94 l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~y~p~~g~-~p~~~v~~~~di~~~~~~g-~~~~~~~ 169 (259)
+++++ +|+++.|++||+++||++.+|+|+| +++++++|+.++|+|+++. +|.+++++++|++.++++| .+..+++
T Consensus 94 l~v~~-~g~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~~y~~~~~~~~p~~~~~~~~d~~~~~~~g~~g~~~~~ 172 (266)
T PRK11171 94 ITLTL-EGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRKRYEPVEGHEAPEAFVGNESDIEPIPMPGTDGVWATT 172 (266)
T ss_pred EEEEE-CCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEcCCeEcCCCCCCCeEecchhcccccccCCCCCeEEEE
Confidence 99999 9999999999999999999999999 6799999999999999987 8999999999999999976 4445554
Q ss_pred -ee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEE
Q 025000 170 -LL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTR 247 (259)
Q Consensus 170 -l~-p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~ 247 (259)
++ |++.++++.|++++|+||++++++++|.+||.+|||+|+|.+++||+|++|++||+||++++++|+|+|+|+++++
T Consensus 173 ~~~~p~~~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~ 252 (266)
T PRK11171 173 RLVDPEDLRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFR 252 (266)
T ss_pred EeeCchhcCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCEEEEeCCCCEEEECCCCCEEEECCCCCcEE
Confidence 44 6777888999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCC
Q 025000 248 YLLYKDVNRNPL 259 (259)
Q Consensus 248 fi~~k~~nr~~~ 259 (259)
||+||||||||+
T Consensus 253 yl~~k~~nr~~~ 264 (266)
T PRK11171 253 YLLYKDVNRHPE 264 (266)
T ss_pred EEEEcccccCcc
Confidence 999999999985
No 4
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.93 E-value=2e-24 Score=201.75 Aligned_cols=189 Identities=16% Similarity=0.224 Sum_probs=143.4
Q ss_pred cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEc--CCcEE--EEeCCcEEEeCCCCcEEEEe-CCeEEEEEEEEe
Q 025000 62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNA--SGVSS--KLMVDSYTYLPPNFAHSLRA-EGSATLVVFERR 136 (259)
Q Consensus 62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~--~ge~~--~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~~~ 136 (259)
.+++.++++.||+..+.|.|...|++||++|++++++. +|+.+ .|++||+++||+|..|.++| .+.++++++...
T Consensus 66 ~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~ 145 (367)
T TIGR03404 66 AIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDD 145 (367)
T ss_pred cccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCC
Confidence 68999999999998888877888999999999999992 25676 49999999999999999999 556787773222
Q ss_pred c----------------cccC-------------------------C----------------CCcceeeccCCCCCCcc
Q 025000 137 Y----------------ASLE-------------------------N----------------HITEQIVGSTDKQPLLE 159 (259)
Q Consensus 137 y----------------~p~~-------------------------g----------------~~p~~~v~~~~di~~~~ 159 (259)
- .|.+ | ..|..+..+..++++..
T Consensus 146 ~~f~~~~~~~~~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 225 (367)
T TIGR03404 146 GNFSEDGTFLVTDWLAHTPKDVLAKNFGVPESAFDNLPLKELYIFPGTVPGPLDQEAVTGPAGEVPGPFTYHLSEQKPKQ 225 (367)
T ss_pred cccCCcceeeHHHHHHhCCHHHHHHHhCCCHHHHHhccccCceEEecCCCCccccccCcCCCCCCCccEEEEhhhCCcee
Confidence 1 0000 0 01111222233333333
Q ss_pred cCCceEEEEEeeCCCC--CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe-----CCEEEEccCCcEEEeCC
Q 025000 160 TPGEVFQLRKLLPQAV--PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-----GDSWYPVQAGDVLWMAP 232 (259)
Q Consensus 160 ~~g~~~~~~~l~p~~~--~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~-----~g~~~~v~~GD~i~~~~ 232 (259)
..||. ++.+.+.+. ...+.+..++|+||+..+.|-|...+|.+|||+|++++++ ++++.++++||++|+|+
T Consensus 226 ~~gG~--~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~ 303 (367)
T TIGR03404 226 VPGGT--VRIADSTNFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPR 303 (367)
T ss_pred cCCce--EEEEChhhccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECC
Confidence 34444 355555433 3568899999999999998544446688999999999998 46899999999999999
Q ss_pred CCceeEEeCCCccEEEEEEe
Q 025000 233 FVPQWYAALGKTRTRYLLYK 252 (259)
Q Consensus 233 ~~~H~~~n~G~e~~~fi~~k 252 (259)
|..|+++|+|+++++||+.=
T Consensus 304 g~~H~i~N~G~e~l~fL~if 323 (367)
T TIGR03404 304 NMGHYVENTGDETLVFLEVF 323 (367)
T ss_pred CCeEEEEECCCCCEEEEEEE
Confidence 99999999999999999963
No 5
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.71 E-value=1.3e-16 Score=128.07 Aligned_cols=101 Identities=19% Similarity=0.216 Sum_probs=85.0
Q ss_pred eeeccCCCCCCccc--C-CceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEE-e-CCEEEE
Q 025000 147 QIVGSTDKQPLLET--P-GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR-L-GDSWYP 221 (259)
Q Consensus 147 ~~v~~~~di~~~~~--~-g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~-~-~g~~~~ 221 (259)
++|.+.+|++.+++ + ++++.+|++.+.+ +..+.+++++|+||++++.|.||. +|.+|||+|++.+. + ||++++
T Consensus 1 ~~v~~~~~~~~~~~~~~~~~~~~krll~~~~-~~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g~~~~ 78 (125)
T PRK13290 1 MIVRTLDEIEGTERDVKAGNWTSRRLLLKDD-GMGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATGEVHP 78 (125)
T ss_pred CeEEEHHHccCcceeeecCCceEEEEEEecC-CCCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCCEEEE
Confidence 46778889998887 2 3556666777633 467788899999999999855544 58999999999999 7 599999
Q ss_pred ccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 222 VQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 222 v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
+++||+++++++.+|+++|+ +++++|+-
T Consensus 79 L~aGD~i~~~~~~~H~~~N~--e~~~~l~v 106 (125)
T PRK13290 79 IRPGTMYALDKHDRHYLRAG--EDMRLVCV 106 (125)
T ss_pred eCCCeEEEECCCCcEEEEcC--CCEEEEEE
Confidence 99999999999999999998 89999885
No 6
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.63 E-value=5.9e-15 Score=118.43 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=73.2
Q ss_pred EEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEE-EcC-CcEEEEeCCcEEEeCCCCcEEEEeCCeEE
Q 025000 52 AYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLT-NAS-GVSSKLMVDSYTYLPPNFAHSLRAEGSAT 129 (259)
Q Consensus 52 ~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~-v~~-ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~ 129 (259)
+.++.+..+..|.+++++++||+..+.|.|..+|++|||+|+++++ + + |+++.|++||++|||++.+|+++|.++++
T Consensus 24 krll~~~~~~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i-~~g~~~~L~aGD~i~~~~~~~H~~~N~e~~~ 102 (125)
T PRK13290 24 RRLLLKDDGMGFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL-ATGEVHPIRPGTMYALDKHDRHYLRAGEDMR 102 (125)
T ss_pred EEEEEecCCCCEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc-CCCEEEEeCCCeEEEECCCCcEEEEcCCCEE
Confidence 4455566778999999999999988777544468999999999999 8 6 99999999999999999999999988999
Q ss_pred EEEEEEe
Q 025000 130 LVVFERR 136 (259)
Q Consensus 130 ~l~v~~~ 136 (259)
++|+..+
T Consensus 103 ~l~v~tP 109 (125)
T PRK13290 103 LVCVFNP 109 (125)
T ss_pred EEEEECC
Confidence 9998653
No 7
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.60 E-value=5.3e-15 Score=105.64 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=62.8
Q ss_pred EEEecCCcccCcceeeccc-eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 183 IMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 183 ~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
+++|+||+.++. |+|..+ |.+|||+|++.+.++|+++.+++||+++++++++|++.|.|+++++||.
T Consensus 2 ~~~~~pG~~~~~-h~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~ 69 (71)
T PF07883_consen 2 LVTLPPGGSIPP-HRHPGEDEFFYVLSGEGTLTVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLV 69 (71)
T ss_dssp EEEEETTEEEEE-EEESSEEEEEEEEESEEEEEETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE
T ss_pred EEEECCCCCCCC-EECCCCCEEEEEEECCEEEEEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEE
Confidence 578999999997 557766 9999999999999999999999999999999999999999999999986
No 8
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.56 E-value=3.1e-14 Score=114.47 Aligned_cols=87 Identities=23% Similarity=0.398 Sum_probs=76.6
Q ss_pred EEE-EeeCCCCCcceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC
Q 025000 166 QLR-KLLPQAVPFDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK 243 (259)
Q Consensus 166 ~~~-~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~ 243 (259)
.++ .+++.+.+..+.+..++|+||+.++. |+|+ .++.+|||+|++.++++|+.+.+++||+|++++|..||+.|.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~v~~~~G~~~~~-H~hp~~~~~~~Vl~G~~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~ 107 (131)
T COG1917 29 VVKSRVLPRNEGENLSVVLVTFEPGAVIPW-HTHPLGEQTIYVLEGEGTVQLEGEKKELKAGDVIIIPPGVVHGLKAVED 107 (131)
T ss_pred EEEeeeccCCCCceEEEEEEEECCCccccc-ccCCCcceEEEEEecEEEEEecCCceEecCCCEEEECCCCeeeeccCCC
Confidence 444 45577778889999999999999997 7776 77999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEee
Q 025000 244 TRTRYLLYKD 253 (259)
Q Consensus 244 e~~~fi~~k~ 253 (259)
+++.+|+...
T Consensus 108 ~~~~~l~v~~ 117 (131)
T COG1917 108 EPMVLLLVFP 117 (131)
T ss_pred CceeEEEEee
Confidence 9877776543
No 9
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.54 E-value=9.7e-14 Score=118.08 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=72.1
Q ss_pred ceEEEEecCCCCCcEEEEEEEecCCCcCC-CCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--C
Q 025000 49 TLGAYLITPAMGSHFVMYLANMQENARSA-LPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--E 125 (259)
Q Consensus 49 ~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~-~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~ 125 (259)
..+..+..+..+..+++++.+++||+... .++|.++|++||++|++++++ +|+++.|++||+++||++++|+|+| +
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~-~~~~~~l~~Gd~~~~~~~~~H~~~n~~~ 171 (185)
T PRK09943 93 VSMKLVHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI-NGQDYHLVAGQSYAINTGIPHSFSNTSA 171 (185)
T ss_pred ceEEEeccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEE-CCEEEEecCCCEEEEcCCCCeeeeCCCC
Confidence 34444444444567888999999998754 446888999999999999999 9999999999999999999999999 6
Q ss_pred CeEEEEEEEE
Q 025000 126 GSATLVVFER 135 (259)
Q Consensus 126 ~~a~~l~v~~ 135 (259)
++++++|+..
T Consensus 172 ~~~~~l~~~~ 181 (185)
T PRK09943 172 GICRIISAHT 181 (185)
T ss_pred CCeEEEEEeC
Confidence 6899999854
No 10
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.51 E-value=5.9e-14 Score=100.21 Aligned_cols=66 Identities=26% Similarity=0.464 Sum_probs=60.1
Q ss_pred EEEecCCCcCCCCCCCce-EEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEE
Q 025000 67 LANMQENARSALPPHDVE-RFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF 133 (259)
Q Consensus 67 ~~~l~Pg~~~~~h~~~~E-ef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v 133 (259)
+++++||+..+.|.|..+ |++||++|++++.+ +|+++.|++||++++|++.+|+++| ++++++++|
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-DGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE-TTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE-ccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 678999997788866666 99999999999999 9999999999999999999999999 668888876
No 11
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.8e-13 Score=110.02 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=70.8
Q ss_pred CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000 176 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD 253 (259)
Q Consensus 176 ~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~ 253 (259)
+..+.+..++++||..++.++||.-.|.+|||+|+|.+.++|+..+|++||.+++|+|.+|.+.|+|++||++|.-..
T Consensus 33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~ 110 (127)
T COG0662 33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQS 110 (127)
T ss_pred CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEec
Confidence 356778899999999987766666779999999999999999999999999999999999999999999999998643
No 12
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=99.49 E-value=1.9e-12 Score=119.39 Aligned_cols=201 Identities=15% Similarity=0.221 Sum_probs=138.4
Q ss_pred ceEEEEecCCC-C-----CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEE-EEEcCCcEEEEeCCcEEEeCCCCcEE
Q 025000 49 TLGAYLITPAM-G-----SHFVMYLANMQENARSALPPHDVERFIFVVQGSAM-LTNASGVSSKLMVDSYTYLPPNFAHS 121 (259)
Q Consensus 49 ~~~~~l~sp~~-g-----~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~-v~v~~ge~~~L~~Gd~i~~p~~~~H~ 121 (259)
.++-+|..|.. | ..+...+..|.||.....|.|...-+.||++|+.. ..| +|+.+.+++||.+..|+...|.
T Consensus 61 Rrvl~l~NP~~~g~~~~t~tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V-~g~~~~~~~gD~~~tP~w~wH~ 139 (335)
T TIGR02272 61 RRVLVLENPGLRGQSSITTSLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAV-DGERTTMHPGDFIITPSWTWHD 139 (335)
T ss_pred eEEEEEeCCCCCCccccchhHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEE-CCEEEeeeCCCEEEeCCCeeEe
Confidence 45666777864 3 23555678899999999999999999999999995 667 9999999999999999999999
Q ss_pred EEeCCeEEEEEEE-----------Eec-cccC----------C---------CCcceeeccCCC-----CCCccc-----
Q 025000 122 LRAEGSATLVVFE-----------RRY-ASLE----------N---------HITEQIVGSTDK-----QPLLET----- 160 (259)
Q Consensus 122 ~~N~~~a~~l~v~-----------~~y-~p~~----------g---------~~p~~~v~~~~d-----i~~~~~----- 160 (259)
..|++...++|+. .-| +..+ | ..|........+ .|+..+
T Consensus 140 H~n~~d~~~~wld~lD~Pl~~~l~~~f~e~~~~~~~~~~~~~~~~~~~~g~~l~P~~~~~~~~~sP~~~ypw~~~~~aL~ 219 (335)
T TIGR02272 140 HGNPGDEPMIWLDGLDIPLVQLFDCSFAEGYPEDQQPVTRPEGDSLARYGHNMLPVRHKRSDRSSPIFNYPYERSREALD 219 (335)
T ss_pred cccCCCCcEEEEecCCHHHHHhhCcceeccccccccccccCCcchhhhcccCccccccccCCCCCCceecCcHHHHHHHH
Confidence 9996655566621 011 1000 0 011110000001 222221
Q ss_pred ------C--C-ceEEEEEeeCCCCCc---ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEE
Q 025000 161 ------P--G-EVFQLRKLLPQAVPF---DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVL 228 (259)
Q Consensus 161 ------~--g-~~~~~~~l~p~~~~~---~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i 228 (259)
+ + .++.++-.-|...+. .+.+....|.||..... +.|....+|+|++|+|...+||+..+.++||++
T Consensus 220 ~~~~~~~~~~~~g~~l~y~NP~TG~~~~pti~~~~q~L~~G~~t~~-~r~T~s~Vf~VieG~G~s~ig~~~~~W~~gD~f 298 (335)
T TIGR02272 220 DLTRTGEWDPWHGLKLRYVNPATGGYPMPTIGAFIQLLPKGFRTAT-YRSTDATVFCVVEGRGQVRIGDAVFRFSPKDVF 298 (335)
T ss_pred HHHhccCCCCCceEEEEEeCCCCCCCcchhHHHHHhccCCCCCCCC-ccccccEEEEEEeCeEEEEECCEEEEecCCCEE
Confidence 1 1 233343334654432 24444556677777764 788888999999999999999999999999999
Q ss_pred EeCCCCceeEEeCCCccEEEEEEee
Q 025000 229 WMAPFVPQWYAALGKTRTRYLLYKD 253 (259)
Q Consensus 229 ~~~~~~~H~~~n~G~e~~~fi~~k~ 253 (259)
.+|+.+.|...|. +++..+.+-|
T Consensus 299 ~vPsW~~~~h~a~--~da~Lf~~~D 321 (335)
T TIGR02272 299 VVPSWHPVRFEAS--DDAVLFSFSD 321 (335)
T ss_pred EECCCCcEecccC--CCeEEEEecC
Confidence 9999999988885 5666666654
No 13
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.43 E-value=2.6e-12 Score=115.24 Aligned_cols=93 Identities=18% Similarity=0.176 Sum_probs=79.7
Q ss_pred CC-ceEEEEEeeCCCCC--cceEEEEEEecCCcccCcceee-ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCce
Q 025000 161 PG-EVFQLRKLLPQAVP--FDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ 236 (259)
Q Consensus 161 ~g-~~~~~~~l~p~~~~--~~~~~~~~t~~PG~~~~~~~~H-~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H 236 (259)
+| .+++.+.|.+...+ ..+.+.+++++||+....+++| .+||.+|||+|+..++++|+++.+++||++|++++++|
T Consensus 37 p~~~~~~~~~l~~P~~g~~~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~~~~L~~Gd~~y~pa~~~H 116 (260)
T TIGR03214 37 PGFENTDIWILSRPKLGFAATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGETHELREGGYAYLPPGSKW 116 (260)
T ss_pred CCCcccEEEEEcCCCCCCCCcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCE
Confidence 44 56677888854444 6788999999999876554444 56899999999999999999999999999999999999
Q ss_pred eEEeCCCccEEEEEEee
Q 025000 237 WYAALGKTRTRYLLYKD 253 (259)
Q Consensus 237 ~~~n~G~e~~~fi~~k~ 253 (259)
.+.|.|+++++|+++|-
T Consensus 117 ~~~N~~~~~a~~l~v~k 133 (260)
T TIGR03214 117 TLANAQAEDARFFLYKK 133 (260)
T ss_pred EEEECCCCCEEEEEEEe
Confidence 99999999999999874
No 14
>PRK11171 hypothetical protein; Provisional
Probab=99.42 E-value=3.1e-12 Score=115.04 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=79.8
Q ss_pred ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceee-ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000 163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL 241 (259)
Q Consensus 163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H-~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~ 241 (259)
+++..+.|.+.+....+.+.+++++||+....+.|| ..||.+|||+|+..+.++|+++.+++||.++++++.+|.|.|.
T Consensus 45 ~~~~~~~L~~~~~~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~~~~L~~GDsi~~p~~~~H~~~N~ 124 (266)
T PRK11171 45 ENTRAWVLARPGLGATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGKTHALSEGGYAYLPPGSDWTLRNA 124 (266)
T ss_pred CCeEEEEEeCCCCCCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCEEEEECCCCEEEECCCCCEEEEEC
Confidence 556677788766667788889999999987765555 5688999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEee
Q 025000 242 GKTRTRYLLYKD 253 (259)
Q Consensus 242 G~e~~~fi~~k~ 253 (259)
|++++++|+.+-
T Consensus 125 g~~~a~~l~v~~ 136 (266)
T PRK11171 125 GAEDARFHWIRK 136 (266)
T ss_pred CCCCEEEEEEEc
Confidence 999999998863
No 15
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.36 E-value=7.6e-12 Score=100.48 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=62.3
Q ss_pred CCCCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000 58 AMGSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 58 ~~g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N 124 (259)
..+..+.+.+++++||+..+.|.|. +++.+|||+|++++++ +|+.+.|++||++++|+|+.|.+.|
T Consensus 38 ~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~-~g~~~~l~~Gd~i~ip~g~~H~~~a 104 (131)
T COG1917 38 NEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL-EGEKKELKAGDVIIIPPGVVHGLKA 104 (131)
T ss_pred CCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEe-cCCceEecCCCEEEECCCCeeeecc
Confidence 3467899999999999999999886 8999999999999999 8999999999999999999999998
No 16
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.36 E-value=8.4e-12 Score=106.16 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=72.6
Q ss_pred EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000 166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR 245 (259)
Q Consensus 166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~ 245 (259)
..+.|.+.+....+-+-+.+++||+..+.+++|..+|.+|||+|+..+.+||+.+.+++||.++++++.+|.+.|.|+++
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~ 173 (185)
T PRK09943 94 SMKLVHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGI 173 (185)
T ss_pred eEEEeccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCC
Confidence 44445454444444455678999998776678888899999999999999999999999999999999999999999999
Q ss_pred EEEEEE
Q 025000 246 TRYLLY 251 (259)
Q Consensus 246 ~~fi~~ 251 (259)
+++|+.
T Consensus 174 ~~~l~~ 179 (185)
T PRK09943 174 CRIISA 179 (185)
T ss_pred eEEEEE
Confidence 999986
No 17
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.1e-11 Score=99.50 Aligned_cols=73 Identities=19% Similarity=0.397 Sum_probs=62.6
Q ss_pred CCcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE
Q 025000 60 GSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF 133 (259)
Q Consensus 60 g~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v 133 (259)
+..+....+.+.||+....| ++..+|++||++|++.+++ +|++..|++||++++|+|++|+++|.+...+.++
T Consensus 33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~-~~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~li 106 (127)
T COG0662 33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI-GGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLI 106 (127)
T ss_pred CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCcceEEE
Confidence 56888899999999987554 4448999999999999999 9999999999999999999999999654444443
No 18
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.34 E-value=4.9e-12 Score=122.16 Aligned_cols=76 Identities=13% Similarity=0.218 Sum_probs=68.7
Q ss_pred CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 176 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 176 ~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
+..+.+..++++||++++.|.||..+|.+|||+|++.+++||+.+.+++||.++++++.+|++.|.|++++++|+.
T Consensus 373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v 448 (468)
T TIGR01479 373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEV 448 (468)
T ss_pred CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 4568889999999999887656555567799999999999999999999999999999999999999999999875
No 19
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.34 E-value=5.9e-12 Score=121.59 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=68.8
Q ss_pred CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 176 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 176 ~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
+..+.+.+++++||++++.+.||.-+|.+|||+|++.+.++|+++.+++||.++++++.+|+++|+|++|+++|+-
T Consensus 382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 4567888999999998876656655688899999999999999999999999999999999999999999999974
No 20
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.33 E-value=9.2e-12 Score=120.25 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=68.1
Q ss_pred CCcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEEe
Q 025000 60 GSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFERR 136 (259)
Q Consensus 60 g~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~~ 136 (259)
+.+|.+.+++++||++.+.| +|..+|++||++|++++++ +|+++.|++||+++||++.+|+|+| +++++++++...
T Consensus 382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i-dg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g 460 (478)
T PRK15460 382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI-DGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSG 460 (478)
T ss_pred CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence 67899999999999977555 4566799999999999999 9999999999999999999999999 679999999533
No 21
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.31 E-value=2.5e-11 Score=99.46 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=69.1
Q ss_pred cceEEEEEEecCCcccCcceeec-cceEEEEEEceEEEEeCCE------EEEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000 177 FDFNIHIMDFQPGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDS------WYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 249 (259)
Q Consensus 177 ~~~~~~~~t~~PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g~------~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 249 (259)
..+.+..++++||+..+. |.|. .++.+|||+|++.+.++++ .+.+++||+++++++..|++.|.|+++++|+
T Consensus 28 ~~~~~~~~~i~pg~~~~~-h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l 106 (146)
T smart00835 28 LGISAARVNLEPGGMLPP-HYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFV 106 (146)
T ss_pred CceEEEEEEecCCcCcCC-eeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEE
Confidence 368889999999999996 5554 6789999999999999876 9999999999999999999999999999999
Q ss_pred EEeec
Q 025000 250 LYKDV 254 (259)
Q Consensus 250 ~~k~~ 254 (259)
++..-
T Consensus 107 ~~~~~ 111 (146)
T smart00835 107 AFNTN 111 (146)
T ss_pred EEecC
Confidence 98553
No 22
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=99.29 E-value=8.2e-11 Score=104.45 Aligned_cols=195 Identities=14% Similarity=0.120 Sum_probs=107.5
Q ss_pred ceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE---EEEeCCcEEEeCCCCcEEEEeC
Q 025000 49 TLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS---SKLMVDSYTYLPPNFAHSLRAE 125 (259)
Q Consensus 49 ~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~---~~L~~Gd~i~~p~~~~H~~~N~ 125 (259)
....+|-.-........+++.+++|-+.++|.|...+-+|||+|++. . |+.. .-|.+|++.+.|+|..|.-...
T Consensus 22 ~~~~~L~gd~~~~g~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~~--~-~~~~a~~~~l~~Gsy~~~PaG~~h~~~~~ 98 (251)
T PF14499_consen 22 PGAAVLWGDPTKDGPSGMRVKFPAGFSSPPHIHNADYRGTVISGELH--N-GDPKAAAMWLPAGSYWFQPAGEPHITAAE 98 (251)
T ss_dssp -EEEEEEEE--TTS-EEEEEEE-TT-EE--BEESS-EEEEEEESEEE--E-TTEE-----E-TTEEEEE-TT-EEEETTS
T ss_pred cceeeeecCcccCCcceEEEEcCCCccCCCcceeeeEEEEEEEeEEE--c-CCCcccceecCCCceEeccCCCceeeecc
Confidence 34455555443445666788999998889998889999999999755 5 5543 4599999999999988866554
Q ss_pred CeEEEEEE---EEecc--cc-----CCCCcce------eeccCCCCCCcccC-C--ceEEEEEeeCC-CCC-cceEEEEE
Q 025000 126 GSATLVVF---ERRYA--SL-----ENHITEQ------IVGSTDKQPLLETP-G--EVFQLRKLLPQ-AVP-FDFNIHIM 184 (259)
Q Consensus 126 ~~a~~l~v---~~~y~--p~-----~g~~p~~------~v~~~~di~~~~~~-g--~~~~~~~l~p~-~~~-~~~~~~~~ 184 (259)
+...++++ .-+|. |. .|..|.. ++-+-+|+++...+ + .++.+..|-.+ +.+ ....|
T Consensus 99 ~~~~~~~~e~g~gp~~v~p~~~~~~~~e~p~n~~~~~ivwld~~dl~W~~~~~~~~~g~~~a~Lwgd~~~g~~~gll--- 175 (251)
T PF14499_consen 99 GETNLLFIEIGEGPYDVKPSEEAFDNGERPINVDKDNIVWLDASDLEWISAPPGPPPGAQIAFLWGDPNTGQYTGLL--- 175 (251)
T ss_dssp -EE-EEEEE-S---EE---------SS--TT--GGG-EEEEECCCS--EE-SSSTT-SEEEEEEEE-TTS-EE-EEE---
T ss_pred CccEEEEEEeCCCccccccccccccccccccccccccceEeccccCCccccCCCCCCcceEEEEecCCCCCceeeEE---
Confidence 44445554 33443 43 2334444 35566777777765 2 56677777532 222 23443
Q ss_pred EecCCcccCcceeeccceEEEEEEceEEEEe--CCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 185 DFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 185 t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
.-.|++..+..++|.-++..||++|+..|.. +++...+.+|++++-+....|++. .+++++.+++
T Consensus 176 ~kLPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~~~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyI 242 (251)
T PF14499_consen 176 LKLPAGFTGRIHTHASNERAVVISGELDYQSYGASNFGTLDPGSYFGSPGHITHGIF-ITEDECVLYI 242 (251)
T ss_dssp EE-SSEE--SEEE--S-EEEEEEEEEEEETTEEEETTEEEEE-TT-EE--E-------EESS-EEEEE
T ss_pred EEcCCCCcCceeccCCceEEEEEEeEEEEeecccCCCccccCCcccccCCccccccc-ccCCCEEEEE
Confidence 3448898888999999999999999999944 467788999999999999999999 7788887765
No 23
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.28 E-value=2.5e-11 Score=100.43 Aligned_cols=74 Identities=16% Similarity=0.279 Sum_probs=69.4
Q ss_pred cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
..+.++++++.||.++.++.|+.-.|..+|++|+|.+.+||+...+++||.+|+|.|+.|.++|.|++||++|=
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IE 134 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIE 134 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEE
Confidence 45889999999999999977777778899999999999999999999999999999999999999999999984
No 24
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.27 E-value=5.5e-11 Score=101.93 Aligned_cols=82 Identities=21% Similarity=0.389 Sum_probs=67.1
Q ss_pred eeCCCCCcceEEEEEEecCCccc-----Ccceee---ccceEEEEEEceEEEEeCCE-----EEEccCCcEEEeCCCCce
Q 025000 170 LLPQAVPFDFNIHIMDFQPGDFL-----NVKEVH---YNQHGLLLLEGQGIYRLGDS-----WYPVQAGDVLWMAPFVPQ 236 (259)
Q Consensus 170 l~p~~~~~~~~~~~~t~~PG~~~-----~~~~~H---~~eh~~~il~G~g~~~~~g~-----~~~v~~GD~i~~~~~~~H 236 (259)
..+.....++.+.+.+++||... ...|-| ...|.||||+|+|.+.+++. +++++|||++++++|..|
T Consensus 59 ~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H 138 (191)
T PRK04190 59 IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAH 138 (191)
T ss_pred ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcE
Confidence 33544456788999999999962 112344 33499999999999999854 799999999999999999
Q ss_pred eEEeCCCccEEEEEE
Q 025000 237 WYAALGKTRTRYLLY 251 (259)
Q Consensus 237 ~~~n~G~e~~~fi~~ 251 (259)
.+.|+|++||+|++.
T Consensus 139 ~~iN~G~epl~fl~v 153 (191)
T PRK04190 139 RSVNTGDEPLVFLAC 153 (191)
T ss_pred EeEECCCCCEEEEEE
Confidence 999999999999984
No 25
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.26 E-value=3.5e-11 Score=116.19 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=66.2
Q ss_pred CCCcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEEEE
Q 025000 59 MGSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVFER 135 (259)
Q Consensus 59 ~g~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~~ 135 (259)
.+.++.+.+++++||++.+.| ++..+|++||++|++++++ +|+++.|++||++|||++.+|+++| +++++++++..
T Consensus 372 ~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~-dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~ 450 (468)
T TIGR01479 372 QGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI-GDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQS 450 (468)
T ss_pred cCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE-CCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEc
Confidence 356899999999999987655 3344566699999999999 9999999999999999999999999 67999999853
No 26
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.20 E-value=6.9e-11 Score=96.87 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=67.9
Q ss_pred cCCCC-CcEEEEEEEecCCCcCCC-C-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC--CcEEEEe--CCeE
Q 025000 56 TPAMG-SHFVMYLANMQENARSAL-P-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRA--EGSA 128 (259)
Q Consensus 56 sp~~g-~~f~~~~~~l~Pg~~~~~-h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~--~~H~~~N--~~~a 128 (259)
.-..| ++|-+.+..++||+.+.. | ++..|||+|||+||+++.+ ++..+.|+|||++=||+| ..|.++| +..+
T Consensus 34 G~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~-d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~ 112 (161)
T COG3837 34 GDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE-DGGETRLRPGDSAGFPAGVGNAHHLINRSDVIL 112 (161)
T ss_pred hhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEE-CCeeEEecCCceeeccCCCcceeEEeecCCceE
Confidence 33445 689999999999998754 5 4567999999999999999 999999999999999999 8999999 4477
Q ss_pred EEEEEEEe
Q 025000 129 TLVVFERR 136 (259)
Q Consensus 129 ~~l~v~~~ 136 (259)
++|.+..+
T Consensus 113 ~yL~vG~r 120 (161)
T COG3837 113 RYLEVGTR 120 (161)
T ss_pred EEEEeccc
Confidence 88887544
No 27
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=1.2e-10 Score=91.30 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=64.5
Q ss_pred CCC-cEEEEEEEecCCCcCCCCC-CCceEEEEEEECEEEEEEcCC---cEEEEeCCcEEEeCCCCcEEEEe--CCeEEEE
Q 025000 59 MGS-HFVMYLANMQENARSALPP-HDVERFIFVVQGSAMLTNASG---VSSKLMVDSYTYLPPNFAHSLRA--EGSATLV 131 (259)
Q Consensus 59 ~g~-~f~~~~~~l~Pg~~~~~h~-~~~Eef~yVl~G~l~v~v~~g---e~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l 131 (259)
.|+ +++|.+++|+||+....|. .+-|..+|||+|+..++. |+ +..+.++||++|+|+|++|.-.| ++++..+
T Consensus 41 vGas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~-G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~v 119 (142)
T COG4101 41 VGASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWY-GNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAV 119 (142)
T ss_pred cccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeee-ccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEE
Confidence 454 7999999999999998885 567899999999999999 65 34689999999999999999998 4455555
Q ss_pred EEEEeccccC
Q 025000 132 VFERRYASLE 141 (259)
Q Consensus 132 ~v~~~y~p~~ 141 (259)
+. +-.|.+
T Consensus 120 Ia--RsDp~~ 127 (142)
T COG4101 120 IA--RSDPNP 127 (142)
T ss_pred EE--ccCCCC
Confidence 44 444443
No 28
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.13 E-value=5.2e-10 Score=91.62 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=65.3
Q ss_pred CCcEEEEEEEecCCCcCCCCCC-CceEEEEEEECEEEEEEcCCc------EEEEeCCcEEEeCCCCcEEEEe--CCeEEE
Q 025000 60 GSHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNASGV------SSKLMVDSYTYLPPNFAHSLRA--EGSATL 130 (259)
Q Consensus 60 g~~f~~~~~~l~Pg~~~~~h~~-~~Eef~yVl~G~l~v~v~~ge------~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~ 130 (259)
+.++.+..++++||+....|.| ..+|++||++|++++.+ +++ ++.+++||+++||++..|.+.| ++++++
T Consensus 27 ~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~ 105 (146)
T smart00835 27 GLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGV-VDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEF 105 (146)
T ss_pred cCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEE-EeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEE
Confidence 4579999999999999888865 48899999999999998 665 8999999999999999999999 567888
Q ss_pred EEEE
Q 025000 131 VVFE 134 (259)
Q Consensus 131 l~v~ 134 (259)
+++.
T Consensus 106 l~~~ 109 (146)
T smart00835 106 VAFN 109 (146)
T ss_pred EEEe
Confidence 8764
No 29
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=2.9e-10 Score=89.09 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=66.4
Q ss_pred CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC---EEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 176 PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD---SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 176 ~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g---~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
+....|+.+|+.||+...-|+|...|-.+|+|+|+..++-++ +...++|||++|+|+|+||+-.|.+++|++-++
T Consensus 43 as~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vI 120 (142)
T COG4101 43 ASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVI 120 (142)
T ss_pred cceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEE
Confidence 356788999999999998866666777799999999999997 567899999999999999999999999998654
No 30
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.11 E-value=4.2e-10 Score=92.31 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=73.7
Q ss_pred eCCCCC-cceEEEEEEecCCcccCcceee-ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCC--CceeEEeCCCccE
Q 025000 171 LPQAVP-FDFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPF--VPQWYAALGKTRT 246 (259)
Q Consensus 171 ~p~~~~-~~~~~~~~t~~PG~~~~~~~~H-~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~--~~H~~~n~G~e~~ 246 (259)
+-+-.+ .++-++..+++||..+-.-|-| .++|-+|||+|++.++.||.++.|+|||++=.+.| .-|.+.|.|+.++
T Consensus 33 lG~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~ 112 (161)
T COG3837 33 LGDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGGETRLRPGDSAGFPAGVGNAHHLINRSDVIL 112 (161)
T ss_pred hhhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEECCeeEEecCCceeeccCCCcceeEEeecCCceE
Confidence 333444 5788999999999986554444 56677899999999999999999999999999999 5599999999999
Q ss_pred EEEEEeecCCC
Q 025000 247 RYLLYKDVNRN 257 (259)
Q Consensus 247 ~fi~~k~~nr~ 257 (259)
+||+-.+-+++
T Consensus 113 ~yL~vG~r~~~ 123 (161)
T COG3837 113 RYLEVGTREPD 123 (161)
T ss_pred EEEEecccccc
Confidence 99998877665
No 31
>PLN00212 glutelin; Provisional
Probab=99.07 E-value=3.7e-08 Score=95.22 Aligned_cols=74 Identities=11% Similarity=0.224 Sum_probs=60.8
Q ss_pred ceEEEEEEecCCcccCcceeeccc-eEEEEEEceEEEEe---CCE-EE--EccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 178 DFNIHIMDFQPGDFLNVKEVHYNQ-HGLLLLEGQGIYRL---GDS-WY--PVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 178 ~~~~~~~t~~PG~~~~~~~~H~~e-h~~~il~G~g~~~~---~g~-~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
++.+.+..|.||+..+. |.|... +++||++|+|.+-+ +|. .+ .|++||++++|.|..|..++. ++.|.|++
T Consensus 347 ~LSa~rv~L~~gam~~P-Hwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v~ 424 (493)
T PLN00212 347 QMSATRVNLYQNALLSP-FWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYIA 424 (493)
T ss_pred CeeEEEEEEcCCcccCC-eecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeec-CCceEEEE
Confidence 57788999999999986 666655 77899999998765 322 22 799999999999999998775 67799999
Q ss_pred Eee
Q 025000 251 YKD 253 (259)
Q Consensus 251 ~k~ 253 (259)
+|-
T Consensus 425 F~t 427 (493)
T PLN00212 425 FKT 427 (493)
T ss_pred eec
Confidence 993
No 32
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.07 E-value=1.2e-09 Score=102.54 Aligned_cols=89 Identities=12% Similarity=0.196 Sum_probs=71.6
Q ss_pred cceEEEEecCCCC--CcEEEEEEEecCCCcCCCCCC-CceEEEEEEECEEEEEEc----CCcEEEEeCCcEEEeCCCCcE
Q 025000 48 NTLGAYLITPAMG--SHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTNA----SGVSSKLMVDSYTYLPPNFAH 120 (259)
Q Consensus 48 ~~~~~~l~sp~~g--~~f~~~~~~l~Pg~~~~~h~~-~~Eef~yVl~G~l~v~v~----~ge~~~L~~Gd~i~~p~~~~H 120 (259)
+..++.+.++... ..+.+..++|+||+..+.|.| ..+|++||++|++++++. +++++.|++||.+|||+|..|
T Consensus 228 gG~~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~g~~H 307 (367)
T TIGR03404 228 GGTVRIADSTNFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPRNMGH 307 (367)
T ss_pred CceEEEEChhhccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECCCCeE
Confidence 3444444444443 468999999999999999955 578999999999999982 257889999999999999999
Q ss_pred EEEe--CCeEEEEEEEEe
Q 025000 121 SLRA--EGSATLVVFERR 136 (259)
Q Consensus 121 ~~~N--~~~a~~l~v~~~ 136 (259)
.++| ++++++|.+.+.
T Consensus 308 ~i~N~G~e~l~fL~if~s 325 (367)
T TIGR03404 308 YVENTGDETLVFLEVFKA 325 (367)
T ss_pred EEEECCCCCEEEEEEECC
Confidence 9999 568999987433
No 33
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=99.04 E-value=1.4e-09 Score=88.50 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=57.7
Q ss_pred eEEEEecCC-CC-CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC---------cEEEEeCCcEEEeCCCC
Q 025000 50 LGAYLITPA-MG-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG---------VSSKLMVDSYTYLPPNF 118 (259)
Q Consensus 50 ~~~~l~sp~-~g-~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g---------e~~~L~~Gd~i~~p~~~ 118 (259)
.-..++... .| +.+++++-+++||.+++.|.|..||+++||+|+.++.+ +. +++...++++++||.+.
T Consensus 29 sH~TvAGa~~hGmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l-~~~~~~~pG~pqef~~~pnSTf~IPvn~ 107 (167)
T PF02041_consen 29 SHITVAGALLHGMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYL-ASSHEKYPGKPQEFPIFPNSTFHIPVND 107 (167)
T ss_dssp EEEEEE-HHHH--SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE---SSSSS--S-EEEEE-TTEEEEE-TT-
T ss_pred ceEEeehhhhcCceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEE-ecccccCCCCceEEEecCCCeEEeCCCC
Confidence 333344443 25 57999999999999999999999999999999999998 43 45889999999999999
Q ss_pred cEEEEe-C--CeEEEEEEEEe
Q 025000 119 AHSLRA-E--GSATLVVFERR 136 (259)
Q Consensus 119 ~H~~~N-~--~~a~~l~v~~~ 136 (259)
+|+..| + ++.+++++.++
T Consensus 108 ~HQv~NT~e~eDlqvlViiSr 128 (167)
T PF02041_consen 108 AHQVWNTNEHEDLQVLVIISR 128 (167)
T ss_dssp -EEEE---SSS-EEEEEEEES
T ss_pred cceeecCCCCcceEEEEEecC
Confidence 999999 3 58999998765
No 34
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.00 E-value=5.6e-09 Score=93.84 Aligned_cols=202 Identities=15% Similarity=0.187 Sum_probs=136.5
Q ss_pred eEEEEecCCC-CC-----cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEE
Q 025000 50 LGAYLITPAM-GS-----HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR 123 (259)
Q Consensus 50 ~~~~l~sp~~-g~-----~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~ 123 (259)
++-+|..|.. |+ .+-..+.-|.||...+.|.|...-+-||++|+...++.+|+...+++||++.-|++.-|---
T Consensus 73 Rvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdGer~~M~~GDfilTP~w~wHdHg 152 (351)
T COG3435 73 RVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDGERTPMEAGDFILTPAWTWHDHG 152 (351)
T ss_pred EEEEecCCCCCCcccccHHHHhhhheecCcccCCcccccccceEEEEeccceeEeecCceeeccCCCEEEccCceeccCC
Confidence 5556666643 21 23334556789999999999999999999999977665899999999999999999999888
Q ss_pred eCCeEEEEEEEEec-------------------ccc---CC-C----Cccee-eccCC--------CCC-----------
Q 025000 124 AEGSATLVVFERRY-------------------ASL---EN-H----ITEQI-VGSTD--------KQP----------- 156 (259)
Q Consensus 124 N~~~a~~l~v~~~y-------------------~p~---~g-~----~p~~~-v~~~~--------di~----------- 156 (259)
|.+.--++|..-.= +|. ++ . .|.+. +++-. +.+
T Consensus 153 n~g~eP~iWlDgLDiplv~~l~~gFfe~~~e~~q~v~~~~~d~~ar~~~~~rP~~~r~~~~~SPlf~Y~w~~t~eAL~~l 232 (351)
T COG3435 153 NEGTEPCIWLDGLDIPLVNSLGAGFFEEHPEEQQPVTRPEGDSLARYGPGMRPLRHRWGKPYSPLFNYAWDRTREALERL 232 (351)
T ss_pred CCCCCceEEEcccchHHHHhhcccccccCchhcCcccCCCCCchhhcCCCccccccCCCCCCCcccccccccHHHHHHHH
Confidence 85444455542110 000 00 0 01110 00000 001
Q ss_pred -----CcccCCceEEEEEeeCCCCCcceE--EEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEE
Q 025000 157 -----LLETPGEVFQLRKLLPQAVPFDFN--IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLW 229 (259)
Q Consensus 157 -----~~~~~g~~~~~~~l~p~~~~~~~~--~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~ 229 (259)
..|. ++..++-.-|...+..|. =..|.+-|-|.....|+|...-+|-|.+|.|...|||+.+.-.+||++.
T Consensus 233 a~~e~~dp~--dG~~~ryvNP~TGg~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~Ig~~rf~~~~~D~fv 310 (351)
T COG3435 233 ARLEEPDPF--DGYKMRYVNPVTGGYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTIIGGERFDWSAGDIFV 310 (351)
T ss_pred HhccCCCCC--CcceEEEecCCCCCCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEECCEEeeccCCCEEE
Confidence 1111 234555555655443221 0122333444455678999999999999999999999999999999999
Q ss_pred eCCCCceeEEeCCCccEEEEEEeec
Q 025000 230 MAPFVPQWYAALGKTRTRYLLYKDV 254 (259)
Q Consensus 230 ~~~~~~H~~~n~G~e~~~fi~~k~~ 254 (259)
+|+-.+|.+.|. .+++..++|.|-
T Consensus 311 VPsW~~~~~~~g-s~da~LFsfsD~ 334 (351)
T COG3435 311 VPSWAWHEHVNG-SEDAVLFSFSDR 334 (351)
T ss_pred ccCcceeecccC-CcceEEEecCCc
Confidence 999999999987 899999999884
No 35
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.99 E-value=2.6e-09 Score=86.89 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=61.7
Q ss_pred cceeeccCCCCCCcccCCceEEEEEeeCC---CCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC----
Q 025000 145 TEQIVGSTDKQPLLETPGEVFQLRKLLPQ---AVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD---- 217 (259)
Q Consensus 145 p~~~v~~~~di~~~~~~g~~~~~~~l~p~---~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g---- 217 (259)
.-.+|.|++++|...+.-+++ ..+-+.. ..-.++.|=.-||.||..+|. |.|.-||.++||+|+|...+.+
T Consensus 8 ~~~~Vr~iselpq~~ygr~GL-sH~TvAGa~~hGmkevEVwlQTfAPG~~TPi-HRHsCEEVFvVLkG~GTl~l~~~~~~ 85 (167)
T PF02041_consen 8 GLPLVRNISELPQDNYGRPGL-SHITVAGALLHGMKEVEVWLQTFAPGSATPI-HRHSCEEVFVVLKGSGTLYLASSHEK 85 (167)
T ss_dssp ---SEEEGGGS--B-TT-TTE-EEEEEE-HHHH--SSEEEEEEEE-TT-B--E-EEESS-EEEEEEE--EEEEE--SSSS
T ss_pred CCceeEEhhhCccccccCCCc-ceEEeehhhhcCceeeeEEeeeecCCCCCCC-ccccccEEEEEEecceEEEEeccccc
Confidence 345788999999999843332 2332222 223567788899999999996 8999999999999999999975
Q ss_pred -----EEEEccCCcEEEeCCCCceeEEeCCC-ccEEEEE
Q 025000 218 -----SWYPVQAGDVLWMAPFVPQWYAALGK-TRTRYLL 250 (259)
Q Consensus 218 -----~~~~v~~GD~i~~~~~~~H~~~n~G~-e~~~fi~ 250 (259)
++.++.++|.+.+|+|+.|++.|++. |++..++
T Consensus 86 ~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlV 124 (167)
T PF02041_consen 86 YPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLV 124 (167)
T ss_dssp S--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEE
T ss_pred CCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEE
Confidence 35889999999999999999999995 8887665
No 36
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.90 E-value=1.4e-08 Score=84.11 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=63.8
Q ss_pred CCcEEEEEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC--eEEEEEE
Q 025000 60 GSHFVMYLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG--SATLVVF 133 (259)
Q Consensus 60 g~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~--~a~~l~v 133 (259)
+..|..-++++.||.+.+.+ ++...|..+|++|++++++ +|+.+.|.+||++++|+|..|++.|.+ +..++=+
T Consensus 60 ~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~-~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEV 135 (151)
T PF01050_consen 60 GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL-DDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEV 135 (151)
T ss_pred cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE-CCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEEE
Confidence 56799999999999998876 4567888899999999999 999999999999999999999999944 5555554
No 37
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.88 E-value=1.9e-08 Score=82.13 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=65.1
Q ss_pred EEEEeeCCCC----C-cceEEEEEEecCCcccCcceeeccceEEEEEEceEEE--EeCC--------EEEE--ccCCcEE
Q 025000 166 QLRKLLPQAV----P-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY--RLGD--------SWYP--VQAGDVL 228 (259)
Q Consensus 166 ~~~~l~p~~~----~-~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~--~~~g--------~~~~--v~~GD~i 228 (259)
.++.+.+.+. . ..++++..+++||+.... |.|...+.+||++|+|.+ ...+ .... +++||++
T Consensus 16 ~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~P-h~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~ 94 (144)
T PF00190_consen 16 RIREADSEDFPILLGLNGVAVRRVLIEPGGLRAP-HYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVF 94 (144)
T ss_dssp EEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEE-EEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEE
T ss_pred EEEEEChhhCcceecccceEEEeeehhcCCccce-eEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccce
Confidence 3555665553 1 467888899999999986 555777999999999984 3332 3344 9999999
Q ss_pred EeCCCCceeEEeCC-CccEEEEEEeecC
Q 025000 229 WMAPFVPQWYAALG-KTRTRYLLYKDVN 255 (259)
Q Consensus 229 ~~~~~~~H~~~n~G-~e~~~fi~~k~~n 255 (259)
++|+|.+||+.|+| ++.+.++++..-+
T Consensus 95 ~vP~G~~h~~~n~~~~~~~~~~~f~~~~ 122 (144)
T PF00190_consen 95 VVPAGHPHWIINDGDDEALVLIIFDTNN 122 (144)
T ss_dssp EE-TT-EEEEEECSSSSEEEEEEEEESS
T ss_pred eeccceeEEEEcCCCCCCEEEEEEECCC
Confidence 99999999999999 5666666665543
No 38
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=98.88 E-value=2.7e-07 Score=82.91 Aligned_cols=181 Identities=17% Similarity=0.178 Sum_probs=111.1
Q ss_pred EEEEecCCC-C-CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC-cEEEEeCC--------cEEEeCCCCc
Q 025000 51 GAYLITPAM-G-SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASG-VSSKLMVD--------SYTYLPPNFA 119 (259)
Q Consensus 51 ~~~l~sp~~-g-~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g-e~~~L~~G--------d~i~~p~~~~ 119 (259)
...-++|.. | +-......+|++|........+.|-.++.|+|++++++ +| +.+.|..- |++|+|.|..
T Consensus 13 ~~~~i~~~~~g~~~~~~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~-~g~~~~~l~~R~~vF~~~~d~lYvp~g~~ 91 (261)
T PF04962_consen 13 LVYSITPENAGWMYMGFGVLRLEAGESLEFELERRELGVVNLGGKATVTV-DGEEFYELGGRESVFDGPPDALYVPRGTK 91 (261)
T ss_dssp -EEECTCCCCCCCCBECCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEE-TTEEEEEE-TTSSGGGS--EEEEE-TT--
T ss_pred EEEEECCCccCccccceEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEe-CCceEEEecccccccCCCCcEEEeCCCCe
Confidence 344555543 3 33444478888998776667778999999999999999 88 77899988 9999999999
Q ss_pred EEEEeCCeEEEEEEEEeccccCCCCcceeeccCCCCCCcccCC--ceEEEEEee-CCCCCcceEEEEEEecCCcc---cC
Q 025000 120 HSLRAEGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPG--EVFQLRKLL-PQAVPFDFNIHIMDFQPGDF---LN 193 (259)
Q Consensus 120 H~~~N~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g--~~~~~~~l~-p~~~~~~~~~~~~t~~PG~~---~~ 193 (259)
-.+.+.+.+++.+...+ .+..-|..++. .+|++...... ....++.++ +.....+..+--.++.||+. -|
T Consensus 92 ~~i~a~~~ae~~~~sap---a~~~~p~~~i~-~~dv~~~~~G~~~~~R~V~~~i~~~~~~~~~Lv~get~~~~G~WsSyP 167 (261)
T PF04962_consen 92 VVIFASTDAEFAVCSAP---AHRDYPPRLIT-PEDVPVEIRGAGNNSRTVRNIIDPNVPPASRLVVGETITPGGNWSSYP 167 (261)
T ss_dssp EEEEESSTEEEEEEEEE----SS----EEE--TTTSEEEEESSGGGTEEEEEEESTTT---SS-EEEEEEETTT-EES-S
T ss_pred EEEEEcCCCEEEEEccc---cCCCCCCEEEC-HHHCCeEEecCCCCcEEEEEeeCCCCcccceEEEEEEEeCCCccCCcC
Confidence 99998777999987655 34332444443 55666665532 223455555 44443443333444466653 44
Q ss_pred cceeecc---------ceEEEEE----EceEE---EEe---CCEEEEccCCcEEEeCCCCceeE
Q 025000 194 VKEVHYN---------QHGLLLL----EGQGI---YRL---GDSWYPVQAGDVLWMAPFVPQWY 238 (259)
Q Consensus 194 ~~~~H~~---------eh~~~il----~G~g~---~~~---~g~~~~v~~GD~i~~~~~~~H~~ 238 (259)
.|+|.. ||+||.. +|-|. |.. .++.+.|+-||++.+|+| -|..
T Consensus 168 -PH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~~V~~~d~V~iP~g-yHp~ 229 (261)
T PF04962_consen 168 -PHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHYVVRNGDAVLIPSG-YHPV 229 (261)
T ss_dssp -EEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEEEEETTEEEEESTT-B-SE
T ss_pred -CccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEEEEECCCEEEeCCC-CCCc
Confidence 477777 7887763 25554 332 257889999999999999 4433
No 39
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.85 E-value=2e-08 Score=83.41 Aligned_cols=68 Identities=24% Similarity=0.370 Sum_probs=57.1
Q ss_pred cCCCcCCCCCCCceEEEEEEECEEEEEEc-CCc--EEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEecc
Q 025000 71 QENARSALPPHDVERFIFVVQGSAMLTNA-SGV--SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYA 138 (259)
Q Consensus 71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~-~ge--~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~ 138 (259)
.||.+...|.+.++|++||++|++.+.+. +|+ +..|++||++.+|+|++|+.+..+.+..|+++++-.
T Consensus 36 Gpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~ 106 (159)
T TIGR03037 36 GPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRP 106 (159)
T ss_pred CCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCC
Confidence 45555667878899999999999999772 343 899999999999999999999877889999987633
No 40
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.81 E-value=6.8e-08 Score=82.88 Aligned_cols=74 Identities=11% Similarity=0.168 Sum_probs=61.0
Q ss_pred CCcEEEEEEEecCCCc------CCCCCC---CceEEEEEEECEEEEEEcCCc-----EEEEeCCcEEEeCCCCcEEEEe-
Q 025000 60 GSHFVMYLANMQENAR------SALPPH---DVERFIFVVQGSAMLTNASGV-----SSKLMVDSYTYLPPNFAHSLRA- 124 (259)
Q Consensus 60 g~~f~~~~~~l~Pg~~------~~~h~~---~~Eef~yVl~G~l~v~v~~ge-----~~~L~~Gd~i~~p~~~~H~~~N- 124 (259)
+.++.+.+++|+||.. +..|.| +..|++|||+|++.+.+ +++ .+.+++||.++||++..|++.|
T Consensus 65 ~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l-~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~ 143 (191)
T PRK04190 65 EGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLL-QDPEGEARWIEMEPGTVVYVPPYWAHRSVNT 143 (191)
T ss_pred CCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEE-ecCCCcEEEEEECCCCEEEECCCCcEEeEEC
Confidence 4679999999999985 233544 44699999999999998 644 6899999999999999999999
Q ss_pred -CCeEEEEEEE
Q 025000 125 -EGSATLVVFE 134 (259)
Q Consensus 125 -~~~a~~l~v~ 134 (259)
+++.+++.+-
T Consensus 144 G~epl~fl~v~ 154 (191)
T PRK04190 144 GDEPLVFLACY 154 (191)
T ss_pred CCCCEEEEEEE
Confidence 5577777763
No 41
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.76 E-value=1.1e-07 Score=83.22 Aligned_cols=75 Identities=11% Similarity=0.148 Sum_probs=61.2
Q ss_pred CCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000 57 PAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE 134 (259)
Q Consensus 57 p~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~ 134 (259)
...+..+....++++- ++.++ +...+|+.||++|++++++ +|+++.+++||++|||+|..|.|.+...+|++.+.
T Consensus 151 ~~d~s~m~aGf~~~~~-~sf~w-tl~~dEi~YVLEGe~~l~I-dG~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~ 225 (233)
T PRK15457 151 GDDGSSMAAGFMQWEN-AFFPW-TLNYDEIDMVLEGELHVRH-EGETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVA 225 (233)
T ss_pred cCCCCceeeEEEEEec-Cccce-eccceEEEEEEEeEEEEEE-CCEEEEeCCCcEEEECCCCeEEecCCCCeeEEEEE
Confidence 3345677777777774 33333 4567999999999999999 99999999999999999999999876688887765
No 42
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.76 E-value=4.6e-08 Score=82.47 Aligned_cols=66 Identities=26% Similarity=0.398 Sum_probs=56.7
Q ss_pred cCCCcCCCCCCCceEEEEEEECEEEEEE-cCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000 71 QENARSALPPHDVERFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR 136 (259)
Q Consensus 71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~ 136 (259)
-||.+...|.+.++|++|+++|++.|.+ .+| ++..|++||++++|+|++|+.+..+.+..|++++.
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~ 110 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERK 110 (177)
T ss_pred cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeC
Confidence 4666667788889999999999999998 234 58999999999999999999988777888888766
No 43
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.74 E-value=1.4e-07 Score=82.38 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=63.5
Q ss_pred eEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC
Q 025000 164 VFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK 243 (259)
Q Consensus 164 ~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~ 243 (259)
.+....++..+.+..|..-.++++- ++.+ .+..+.|..|||+|+..+.+||+.+.++|||++|+++|..|.+.+.++
T Consensus 142 ~v~~~d~~~~~d~s~m~aGf~~~~~-~sf~--wtl~~dEi~YVLEGe~~l~IdG~t~~l~pGDvlfIPkGs~~hf~tp~~ 218 (233)
T PRK15457 142 CVGLTDLVTGDDGSSMAAGFMQWEN-AFFP--WTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPSS 218 (233)
T ss_pred cEEeeeeeccCCCCceeeEEEEEec-Cccc--eeccceEEEEEEEeEEEEEECCEEEEeCCCcEEEECCCCeEEecCCCC
Confidence 4444555544446667777777774 4444 577778999999999999999999999999999999999977766655
Q ss_pred ccEEEEE
Q 025000 244 TRTRYLL 250 (259)
Q Consensus 244 e~~~fi~ 250 (259)
..+.|+.
T Consensus 219 aRflyV~ 225 (233)
T PRK15457 219 VRFLYVA 225 (233)
T ss_pred eeEEEEE
Confidence 5554444
No 44
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.73 E-value=4.6e-08 Score=84.26 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=56.0
Q ss_pred EEEEecCCcccCcceeec-cc--eEEEEEEceEEEEeCC-----EEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 182 HIMDFQPGDFLNVKEVHY-NQ--HGLLLLEGQGIYRLGD-----SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 182 ~~~t~~PG~~~~~~~~H~-~e--h~~~il~G~g~~~~~g-----~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
....+.||+..-. |-|. .. |.||+|+|+|.|.+.. .+..+++||+||+|++--|...|+|++||+|+.
T Consensus 83 ~e~~~t~G~~~~~-H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~ 158 (209)
T COG2140 83 AEVFKTPGAMREL-HYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLN 158 (209)
T ss_pred eEEEecCCccccc-ccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEE
Confidence 3566778876544 3333 22 5899999999999986 678999999999999999999999999999874
No 45
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.73 E-value=1.2e-07 Score=75.22 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=76.2
Q ss_pred eeeccCCCCCCcc--cCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe--CCEEEEc
Q 025000 147 QIVGSTDKQPLLE--TPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GDSWYPV 222 (259)
Q Consensus 147 ~~v~~~~di~~~~--~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~g~~~~v 222 (259)
++|.+.+|+..++ +.++++..+-|+-++.+..|.|+..++.||.....+-.|.. |..|+++|+|.+.+ +|+.+++
T Consensus 1 MiVR~l~di~~Tdr~V~~~~w~SrRlll~~DgmGFS~h~T~i~aGtet~~~YknHl-EAvyci~G~Gev~~~~~G~~~~i 79 (126)
T PF06339_consen 1 MIVRSLDDIRGTDRDVDAENWESRRLLLKDDGMGFSFHETTIYAGTETHIHYKNHL-EAVYCIEGEGEVEDLDTGEVHPI 79 (126)
T ss_pred CeEEEHHHhcCCceeEEcCCceEEEEEEccCCCCEEEEEEEEeCCCeeEEEecCce-EEEEEEeceEEEEEccCCcEEEc
Confidence 3556666665554 33444444544433335666777999999999876544444 77999999999988 7999999
Q ss_pred cCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 223 QAGDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 223 ~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
+||.+..+...+.|.+.+.. +++.+|-
T Consensus 80 ~pGt~YaLd~hD~H~lra~~--dm~~vCV 106 (126)
T PF06339_consen 80 KPGTMYALDKHDRHYLRAKT--DMRLVCV 106 (126)
T ss_pred CCCeEEecCCCccEEEEecC--CEEEEEE
Confidence 99999999999999999875 8887773
No 46
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.70 E-value=2.2e-07 Score=70.14 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=58.7
Q ss_pred ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC
Q 025000 163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG 242 (259)
Q Consensus 163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G 242 (259)
.++.++.|...+......+..+.++||+.+|. |.|...+.+|||+|.-.+ ++..+ .+||+++.+++..|....
T Consensus 8 ~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~-H~H~g~ee~~VLeG~~~d--~~~~~--~~G~~~~~p~g~~h~~~s-- 80 (91)
T PF12973_consen 8 PGVSVKPLHRDEGETGERVSLLRLEPGASLPR-HRHPGGEEILVLEGELSD--GDGRY--GAGDWLRLPPGSSHTPRS-- 80 (91)
T ss_dssp TTEEEEEEEECSSSTTEEEEEEEE-TTEEEEE-EEESS-EEEEEEECEEEE--TTCEE--ETTEEEEE-TTEEEEEEE--
T ss_pred CCEEEEEeccCCCcccCEEEEEEECCCCCcCc-cCCCCcEEEEEEEEEEEE--CCccC--CCCeEEEeCCCCccccCc--
Confidence 34556666655544567788999999999997 667777888999998875 44444 999999999999999994
Q ss_pred CccEEEE
Q 025000 243 KTRTRYL 249 (259)
Q Consensus 243 ~e~~~fi 249 (259)
++.+..+
T Consensus 81 ~~gc~~~ 87 (91)
T PF12973_consen 81 DEGCLIL 87 (91)
T ss_dssp SSCEEEE
T ss_pred CCCEEEE
Confidence 5665544
No 47
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.66 E-value=9.2e-08 Score=74.83 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=43.3
Q ss_pred eeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 196 EVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 196 ~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
|.|..-+.+||++|+|.+.+||+.+.|+|||+++++|+..|.+...++++++++.
T Consensus 19 h~h~~~~i~~v~~G~~~~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~ 73 (136)
T PF02311_consen 19 HWHDFYEIIYVLSGEGTLHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYW 73 (136)
T ss_dssp ETT-SEEEEEEEEE-EEEEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEE
T ss_pred EECCCEEEEEEeCCEEEEEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEE
Confidence 6677778999999999999999999999999999999999999999977777554
No 48
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.65 E-value=2.1e-07 Score=70.31 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=59.1
Q ss_pred cceEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCe
Q 025000 48 NTLGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGS 127 (259)
Q Consensus 48 ~~~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~ 127 (259)
+.....|-.........+.++.++||+..+.|.|.+-|.+|||+|++. . ++. ...+||+++.|++..|++..++.
T Consensus 9 Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~--d-~~~--~~~~G~~~~~p~g~~h~~~s~~g 83 (91)
T PF12973_consen 9 GVSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEEILVLEGELS--D-GDG--RYGAGDWLRLPPGSSHTPRSDEG 83 (91)
T ss_dssp TEEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEE--E-TTC--EEETTEEEEE-TTEEEEEEESSC
T ss_pred CEEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEE--E-CCc--cCCCCeEEEeCCCCccccCcCCC
Confidence 344455554333346778899999999999887777777799999998 3 444 46999999999999999998767
Q ss_pred EEEEE
Q 025000 128 ATLVV 132 (259)
Q Consensus 128 a~~l~ 132 (259)
|.+++
T Consensus 84 c~~~v 88 (91)
T PF12973_consen 84 CLILV 88 (91)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77665
No 49
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.63 E-value=4e-07 Score=68.24 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=56.1
Q ss_pred cEEEEEEEecCCCcCCC-CCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEE
Q 025000 62 HFVMYLANMQENARSAL-PPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF 133 (259)
Q Consensus 62 ~f~~~~~~l~Pg~~~~~-h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v 133 (259)
.|....++|+||+.-+. +.....-.+||++|.+++++ .+.++.+.+|+++++|+|-...++| +.+|+++.+
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti-~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI-HETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE-TTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE-cCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 67788999999986643 45677888999999999999 9999999999999999999999999 778998875
No 50
>PLN00212 glutelin; Provisional
Probab=98.62 E-value=2e-07 Score=90.27 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=73.3
Q ss_pred EEEEeeCCC--C-CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC-------------------------
Q 025000 166 QLRKLLPQA--V-PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD------------------------- 217 (259)
Q Consensus 166 ~~~~l~p~~--~-~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g------------------------- 217 (259)
.++...+.+ . ....++.+.+++|++-+.. |+|...+.+||++|+|++-+=-
T Consensus 64 ~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP-~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~ 142 (493)
T PLN00212 64 VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLP-RYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKF 142 (493)
T ss_pred eeeecCCCChhhcccceEEEEEEecCCcccCc-cccCCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccccccccccc
Confidence 344455533 2 2456788999999999986 6668889999999999876531
Q ss_pred -----EEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeecCC
Q 025000 218 -----SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDVNR 256 (259)
Q Consensus 218 -----~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~nr 256 (259)
+.+.+++||+|.+|+|..||++|.|+++++.|+.-|+|-
T Consensus 143 ~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n 186 (493)
T PLN00212 143 RDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINN 186 (493)
T ss_pred ccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccc
Confidence 447999999999999999999999999999999988875
No 51
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.50 E-value=1.6e-06 Score=74.73 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=64.1
Q ss_pred CCCcceEEEEecCCC-CCcEEEEEEEecCCCcCCCC-CCCceE--EEEEEECEEEEEE--cCC--cEEEEeCCcEEEeCC
Q 025000 45 EWTNTLGAYLITPAM-GSHFVMYLANMQENARSALP-PHDVER--FIFVVQGSAMLTN--ASG--VSSKLMVDSYTYLPP 116 (259)
Q Consensus 45 ~~~~~~~~~l~sp~~-g~~f~~~~~~l~Pg~~~~~h-~~~~Ee--f~yVl~G~l~v~v--~~g--e~~~L~~Gd~i~~p~ 116 (259)
...+.++++-.++.. |+ .-.++.+.||+..+.| |...+| .+|||+|+.++.+ .+| .+..+++||.+|+|+
T Consensus 63 ~~~~g~L~~~~t~~~pGs--~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp 140 (209)
T COG2140 63 GERGGDLRLDVTRIFPGS--AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPP 140 (209)
T ss_pred cccCCeEEEEeeccCCCc--cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCC
Confidence 333455566565544 44 3346678899988888 445555 9999999999998 123 457889999999999
Q ss_pred CCcEEEEe--CCeEEEEEE
Q 025000 117 NFAHSLRA--EGSATLVVF 133 (259)
Q Consensus 117 ~~~H~~~N--~~~a~~l~v 133 (259)
+--|+.+| +++..|+.+
T Consensus 141 ~~gH~t~N~Gd~pLvf~~v 159 (209)
T COG2140 141 GYGHYTINTGDEPLVFLNV 159 (209)
T ss_pred CcceEeecCCCCCEEEEEE
Confidence 99999999 556666655
No 52
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=98.48 E-value=6.6e-07 Score=73.87 Aligned_cols=81 Identities=6% Similarity=0.140 Sum_probs=60.8
Q ss_pred EEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEE
Q 025000 53 YLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVV 132 (259)
Q Consensus 53 ~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~ 132 (259)
-+++...+..+....++|+.. ..+. .-..+|+.|||+|++++.+ +|+++..++||.+|||.|..-.|.....++++.
T Consensus 67 dv~~~~e~~~l~~Gf~~le~~-~f~w-tl~YDEi~~VlEG~L~i~~-~G~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Y 143 (152)
T PF06249_consen 67 DVFSSDESPRLSAGFMELEKT-SFPW-TLTYDEIKYVLEGTLEISI-DGQTVTAKPGDVIFIPKGSTITFSTPDYARFFY 143 (152)
T ss_dssp EEE-GGGT-SSEEEEEEEEEE-EEEE-E-SSEEEEEEEEEEEEEEE-TTEEEEEETT-EEEE-TT-EEEEEEEEEEEEEE
T ss_pred EeccCCCCCceeeEEEEEeCC-CccE-EeecceEEEEEEeEEEEEE-CCEEEEEcCCcEEEECCCCEEEEecCCCEEEEE
Confidence 355555566777778888763 2222 3568999999999999999 999999999999999999999998777899998
Q ss_pred EEEe
Q 025000 133 FERR 136 (259)
Q Consensus 133 v~~~ 136 (259)
+..|
T Consensus 144 v~yP 147 (152)
T PF06249_consen 144 VTYP 147 (152)
T ss_dssp EEES
T ss_pred EECC
Confidence 8644
No 53
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.46 E-value=1.4e-06 Score=71.14 Aligned_cols=76 Identities=14% Similarity=0.254 Sum_probs=57.7
Q ss_pred CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cC-C-------cEEE--EeCCcEEEeCCCCcEEEEeC--Ce
Q 025000 61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-AS-G-------VSSK--LMVDSYTYLPPNFAHSLRAE--GS 127 (259)
Q Consensus 61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~-g-------e~~~--L~~Gd~i~~p~~~~H~~~N~--~~ 127 (259)
..+.+.+..|.||+...+|.|...+++||++|++.+.+ .. + .... |++||.+++|+|.+|.+.|. .+
T Consensus 32 ~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~ 111 (144)
T PF00190_consen 32 NGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDE 111 (144)
T ss_dssp TTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSS
T ss_pred cceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCCCC
Confidence 46777788889999888886699999999999999766 22 2 2345 99999999999999999995 45
Q ss_pred EEEEEEEEe
Q 025000 128 ATLVVFERR 136 (259)
Q Consensus 128 a~~l~v~~~ 136 (259)
...+.+..-
T Consensus 112 ~~~~~~f~~ 120 (144)
T PF00190_consen 112 ALVLIIFDT 120 (144)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEEC
Confidence 555554433
No 54
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=98.43 E-value=7.1e-07 Score=65.05 Aligned_cols=63 Identities=14% Similarity=0.316 Sum_probs=49.1
Q ss_pred cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000 62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG 126 (259)
Q Consensus 62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~ 126 (259)
.+.....+..||... ..... +|++|||+|+++++..+|++++++|||+++||+|..-.|.-.+
T Consensus 6 ~~~~g~w~~~pg~~~-~~~~~-~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~w~v~~ 68 (74)
T PF05899_consen 6 VFSAGVWECTPGKFP-WPYPE-DEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGTWEVRE 68 (74)
T ss_dssp SEEEEEEEEECEEEE-EEESS-EEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEEEEEEE
T ss_pred CEEEEEEEECCceeE-eeCCC-CEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEEEEECe
Confidence 566677777787533 22223 9999999999999986788999999999999999988887533
No 55
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=98.41 E-value=4.2e-05 Score=68.92 Aligned_cols=162 Identities=10% Similarity=0.136 Sum_probs=110.5
Q ss_pred CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCc-EEEEe---CCeEEEEEEEEeccccCCCCcceeeccCCCC
Q 025000 80 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFA-HSLRA---EGSATLVVFERRYASLENHITEQIVGSTDKQ 155 (259)
Q Consensus 80 ~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~-H~~~N---~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di 155 (259)
....|-.++.|.|+++|++ +|+++.|++.|++|+|.|.. -.+.. ..+++|.+...+ .+..-|..++. .+|+
T Consensus 71 l~rrE~giV~lgG~~~V~v-dG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAP---A~~~~PtrlI~-~~d~ 145 (276)
T PRK00924 71 LERRELGIINIGGAGTVTV-DGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAP---AHTTYPTKKIT-IADA 145 (276)
T ss_pred cCCcEEEEEEccceEEEEE-CCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccc---cCCCCCCEEEC-HHHC
Confidence 4567788899999999999 99999999999999999987 55543 457899998544 44333444443 5555
Q ss_pred CCcccCC----ceEEEEEee-CCCCC-cceEEEEEEecCCc---ccCcceeec-cceEEEE---EEceEEEEeCC---EE
Q 025000 156 PLLETPG----EVFQLRKLL-PQAVP-FDFNIHIMDFQPGD---FLNVKEVHY-NQHGLLL---LEGQGIYRLGD---SW 219 (259)
Q Consensus 156 ~~~~~~g----~~~~~~~l~-p~~~~-~~~~~~~~t~~PG~---~~~~~~~H~-~eh~~~i---l~G~g~~~~~g---~~ 219 (259)
....... ...+++.++ |+... -.+.|-...+.||+ +.|. |+|. ..|.||- =+++-++.++| +.
T Consensus 146 ~~~~rG~~~~sN~R~I~~il~p~~~~s~qLlmG~tvltPGg~WSSyPP-HkHDrr~E~YlYf~l~~~qrV~h~mG~pdET 224 (276)
T PRK00924 146 SPVTLGDLETSNRRTINKYIHPDVLETCQLVMGLTELEPGSVWNTMPC-HTHDRRMEVYFYFDMPEDARVFHFMGEPQET 224 (276)
T ss_pred CeEeccCCCCCCcEEEEEecCCCCCccccEEEEEEEEcCCCCCCCCCC-ccCCCCcceEEEEEcCCCceEEecCCCccce
Confidence 5555421 222455555 66554 45777777789999 4554 5665 3355432 35667788877 44
Q ss_pred --EEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000 220 --YPVQAGDVLWMAPFVPQWYAALGKTRTRYL 249 (259)
Q Consensus 220 --~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 249 (259)
.-|+-+|++..|+---|+=. |...-+||
T Consensus 225 rh~~v~n~~aVisP~wsih~g~--gt~~y~fi 254 (276)
T PRK00924 225 RHIVVHNEQAVISPSWSIHSGV--GTSNYTFI 254 (276)
T ss_pred eeEEEECCCEEECCCcceecCc--CccccEEE
Confidence 77899999999998888754 33444444
No 56
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.36 E-value=1.5e-06 Score=67.85 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=44.9
Q ss_pred CCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC--eEEEEEEEEe
Q 025000 77 ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG--SATLVVFERR 136 (259)
Q Consensus 77 ~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~--~a~~l~v~~~ 136 (259)
..|.|+.=+++||++|++++.+ +|+++.+++||.+++||+..|++.... +.+..|+.-.
T Consensus 17 ~~h~h~~~~i~~v~~G~~~~~~-~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~ 77 (136)
T PF02311_consen 17 PPHWHDFYEIIYVLSGEGTLHI-DGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFS 77 (136)
T ss_dssp EEETT-SEEEEEEEEE-EEEEE-TTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE-
T ss_pred CCEECCCEEEEEEeCCEEEEEE-CCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEEC
Confidence 4567889999999999999999 999999999999999999999999733 7777777433
No 57
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.36 E-value=1.4e-06 Score=78.55 Aligned_cols=71 Identities=17% Similarity=0.312 Sum_probs=57.2
Q ss_pred EEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 180 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 180 ~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
.+.+-...+...++. |.|.+-|.+||++|+|.+.+||+.+.+++||++|++||..|++...++..+..+.|
T Consensus 19 ~~~~~~~~~~~~~~~-H~H~~~ei~~i~~G~~~~~i~~~~~~l~~g~~~~I~p~~~H~~~~~~~~~~~~~~~ 89 (290)
T PRK13501 19 PVAVTNRYPQETFVE-HTHQFCEIVIVWRGNGLHVLNDHPYRITCGDVFYIQAADHHSYESVHDLVLDNIIY 89 (290)
T ss_pred ceEEecCCCCCCCcc-ccccceeEEEEecCceEEEECCeeeeecCCeEEEEcCCCcccccccCCeEEEEEEe
Confidence 333444455566664 78888899999999999999999999999999999999999999776655555544
No 58
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.32 E-value=1.3e-06 Score=80.86 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=65.9
Q ss_pred ceEEEEEEecCCcccCcceeeccceEEEEEEceEEE-EeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000 178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIY-RLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV 254 (259)
Q Consensus 178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~-~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~ 254 (259)
.+...+-.|.||...+. |.|...-..||++|+|.| .+||+..+.++||++.+|+..+|...|.|++++.+|-+-|.
T Consensus 80 tl~a~~q~l~pGe~~~~-HRht~sAl~~vveG~G~~t~V~g~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~lD~ 156 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPS-HRHTQSALRFIVEGKGAFTAVDGERTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGLDI 156 (335)
T ss_pred hHHhhhEEeCCCCCCCc-cccccceEEEEEEcCceEEEECCEEEeeeCCCEEEeCCCeeEecccCCCCcEEEEecCCH
Confidence 34456677889999986 788888999999999974 66999999999999999999999999999999888777663
No 59
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.29 E-value=6.2e-06 Score=67.54 Aligned_cols=82 Identities=15% Similarity=0.211 Sum_probs=66.8
Q ss_pred EEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEE
Q 025000 52 AYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLV 131 (259)
Q Consensus 52 ~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l 131 (259)
.-|++-..|..+...++++++ ..-++ .-..+|.-|||+|++.+.+ +|++...+|||.+|+|-|..-.|.-.+.|+++
T Consensus 89 tdLvt~~~g~~l~aG~m~~~~-~tf~w-tl~yDe~d~VlEGrL~V~~-~g~tv~a~aGDvifiPKgssIefst~gea~fl 165 (176)
T COG4766 89 TDLVTEQEGSRLGAGLMEMKN-TTFPW-TLNYDEIDYVLEGRLHVRI-DGRTVIAGAGDVIFIPKGSSIEFSTTGEAKFL 165 (176)
T ss_pred eceeecccCCccccceeeecc-ccCcc-eecccceeEEEeeeEEEEE-cCCeEecCCCcEEEecCCCeEEEeccceEEEE
Confidence 335666667777777888877 33333 3567999999999999999 99999999999999999999999877779999
Q ss_pred EEEEe
Q 025000 132 VFERR 136 (259)
Q Consensus 132 ~v~~~ 136 (259)
.+..|
T Consensus 166 yvtyP 170 (176)
T COG4766 166 YVTYP 170 (176)
T ss_pred EEEcc
Confidence 98543
No 60
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.27 E-value=2e-05 Score=62.74 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=75.0
Q ss_pred eEEEEecCCCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcEEEEeCCcEEEeCCCCcEEEEeCCeE
Q 025000 50 LGAYLITPAMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVSSKLMVDSYTYLPPNFAHSLRAEGSA 128 (259)
Q Consensus 50 ~~~~l~sp~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a 128 (259)
..+.++-...|-+|++...++.||.....|-..--|.+|+++|+.+++. .+|+++.++||..-.......|.++..++.
T Consensus 22 ~SrRlll~~DgmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~~dm 101 (126)
T PF06339_consen 22 ESRRLLLKDDGMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAKTDM 101 (126)
T ss_pred eEEEEEEccCCCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEecCCE
Confidence 3344555566778999999999998887775555789999999999987 479999999999999999999999997789
Q ss_pred EEEEEEEeccccCC
Q 025000 129 TLVVFERRYASLEN 142 (259)
Q Consensus 129 ~~l~v~~~y~p~~g 142 (259)
+++.+-.| |+-|
T Consensus 102 ~~vCVFnP--pltG 113 (126)
T PF06339_consen 102 RLVCVFNP--PLTG 113 (126)
T ss_pred EEEEEcCC--CCcC
Confidence 99888554 5544
No 61
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=98.27 E-value=5e-06 Score=68.68 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=62.4
Q ss_pred CceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000 162 GEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL 241 (259)
Q Consensus 162 g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~ 241 (259)
+..+.++.++..+.+..|..-.|+++.. ..+ -+=...|..|||+|+-.+.++|+.+..+|||++|+|.|..=-|...
T Consensus 60 ~~~~~~~dv~~~~e~~~l~~Gf~~le~~-~f~--wtl~YDEi~~VlEG~L~i~~~G~~~~A~~GDvi~iPkGs~I~fst~ 136 (152)
T PF06249_consen 60 GDKVYIKDVFSSDESPRLSAGFMELEKT-SFP--WTLTYDEIKYVLEGTLEISIDGQTVTAKPGDVIFIPKGSTITFSTP 136 (152)
T ss_dssp S--EEE-EEE-GGGT-SSEEEEEEEEEE-EEE--EE-SSEEEEEEEEEEEEEEETTEEEEEETT-EEEE-TT-EEEEEEE
T ss_pred CccEEEEEeccCCCCCceeeEEEEEeCC-Ccc--EEeecceEEEEEEeEEEEEECCEEEEEcCCcEEEECCCCEEEEecC
Confidence 3567788887665566677778888873 443 4556679999999999999999999999999999999999888777
Q ss_pred CCccEEEEEE
Q 025000 242 GKTRTRYLLY 251 (259)
Q Consensus 242 G~e~~~fi~~ 251 (259)
+...+-|..|
T Consensus 137 ~~a~~~Yv~y 146 (152)
T PF06249_consen 137 DYARFFYVTY 146 (152)
T ss_dssp EEEEEEEEEE
T ss_pred CCEEEEEEEC
Confidence 6666666555
No 62
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.23 E-value=1.5e-05 Score=59.71 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=58.9
Q ss_pred ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
-++.-++.|.||+.=+.-.+..+.-.+||++|...+++++...-+.+||..++|+|-.=+|+|.|+++.+.+.
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence 6777899999999988777777878899999999999999999999999999999999999999999988654
No 63
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.22 E-value=7.4e-06 Score=71.60 Aligned_cols=91 Identities=13% Similarity=0.018 Sum_probs=66.0
Q ss_pred CCCcccCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCC
Q 025000 155 QPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFV 234 (259)
Q Consensus 155 i~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~ 234 (259)
++|+...+ ++....|...+.. ..++.+.++||+.+|. |+|.-.|..+||+|. +.+++ -...+||++..+++.
T Consensus 106 ~~W~~~~~-gv~~~~L~~~~~~--~~v~Ll~i~pG~~~p~-H~H~G~E~tlVLeG~--f~de~--g~y~~Gd~i~~p~~~ 177 (215)
T TIGR02451 106 WRWRGPGG-RVSRVTLPIDDGN--ARVRLLYIEAGQSIPQ-HTHKGFELTLVLHGA--FSDET--GVYGVGDFEEADGSV 177 (215)
T ss_pred CCccCCCC-CeEEEeccCCCCC--cEEEEEEECCCCccCC-CcCCCcEEEEEEEEE--EEcCC--CccCCCeEEECCCCC
Confidence 55665543 3333334332322 3568999999999997 566666788999999 44444 457999999999999
Q ss_pred ceeEEeCCCccEEEEEEee
Q 025000 235 PQWYAALGKTRTRYLLYKD 253 (259)
Q Consensus 235 ~H~~~n~G~e~~~fi~~k~ 253 (259)
.|+..+.++++|..+.--|
T Consensus 178 ~H~p~a~~~~~Cicl~v~d 196 (215)
T TIGR02451 178 QHQPRTVSGGDCLCLAVLD 196 (215)
T ss_pred CcCcccCCCCCeEEEEEec
Confidence 9999999999888776543
No 64
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.16 E-value=1.4e-05 Score=69.29 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=65.3
Q ss_pred ceEEEEEEecCCcccCcceee-ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000 178 DFNIHIMDFQPGDFLNVKEVH-YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV 254 (259)
Q Consensus 178 ~~~~~~~t~~PG~~~~~~~~H-~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~ 254 (259)
.|.=-++++.|+|-.-..+.. ..|-.+||+||+..+.++|+.+.+++|+++|+|||..|.+.|...++.+|-.||-.
T Consensus 60 tF~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk~ 137 (264)
T COG3257 60 TFVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRKR 137 (264)
T ss_pred hhhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEEeec
Confidence 455557889898854444443 45566899999999999999999999999999999999999999999999998753
No 65
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.15 E-value=2.4e-05 Score=66.58 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=48.2
Q ss_pred eEEEEEEecCCccc--------Cccee----eccceEEEEEEceEEEEeC---C------EEEEccCCcEEEeCCCCcee
Q 025000 179 FNIHIMDFQPGDFL--------NVKEV----HYNQHGLLLLEGQGIYRLG---D------SWYPVQAGDVLWMAPFVPQW 237 (259)
Q Consensus 179 ~~~~~~t~~PG~~~--------~~~~~----H~~eh~~~il~G~g~~~~~---g------~~~~v~~GD~i~~~~~~~H~ 237 (259)
..+-+..+.||--- ++|.. -...|.|++|+|+|.+.+. + ...++++||++++||+--|-
T Consensus 50 L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~ 129 (182)
T PF06560_consen 50 LRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHR 129 (182)
T ss_dssp EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEE
T ss_pred EEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEE
Confidence 66667777777431 11111 1245999999999999885 3 24789999999999999999
Q ss_pred EEeCCCccEEEEEE
Q 025000 238 YAALGKTRTRYLLY 251 (259)
Q Consensus 238 ~~n~G~e~~~fi~~ 251 (259)
..|+|+++|+|...
T Consensus 130 tIN~g~~~L~~~~~ 143 (182)
T PF06560_consen 130 TINTGDEPLVFAAW 143 (182)
T ss_dssp EEE-SSS-EEEEEE
T ss_pred EEECCCCcEEEEEE
Confidence 99999999999865
No 66
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.11 E-value=1.5e-05 Score=69.72 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=56.7
Q ss_pred cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeC--CeEEEEEEE
Q 025000 62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE--GSATLVVFE 134 (259)
Q Consensus 62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~--~~a~~l~v~ 134 (259)
+....++.++||+..+.|.|.+.|+.+||+|+.. - ++ -.+.+||++..|++..|+.++. ++|.++.+.
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~--d-e~--g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~ 195 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS--D-ET--GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL 195 (215)
T ss_pred CcEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE--c-CC--CccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence 3466899999999999998999999999999964 2 33 3689999999999999999984 458877773
No 67
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.11 E-value=2.5e-05 Score=64.06 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=69.2
Q ss_pred ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC
Q 025000 163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG 242 (259)
Q Consensus 163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G 242 (259)
..+....|...+.+..+....+..+| .++| .+-..-|+-|||||+..+.++|+....+|||+||||-|-+=-|.-+|
T Consensus 84 ~~V~~tdLvt~~~g~~l~aG~m~~~~-~tf~--wtl~yDe~d~VlEGrL~V~~~g~tv~a~aGDvifiPKgssIefst~g 160 (176)
T COG4766 84 DCVYTTDLVTEQEGSRLGAGLMEMKN-TTFP--WTLNYDEIDYVLEGRLHVRIDGRTVIAGAGDVIFIPKGSSIEFSTTG 160 (176)
T ss_pred CeEEeeceeecccCCccccceeeecc-ccCc--ceecccceeEEEeeeEEEEEcCCeEecCCCcEEEecCCCeEEEeccc
Confidence 44566667776667777777888888 6665 35555699999999999999999999999999999999999999888
Q ss_pred CccEEEEEE
Q 025000 243 KTRTRYLLY 251 (259)
Q Consensus 243 ~e~~~fi~~ 251 (259)
...+-|+.|
T Consensus 161 ea~flyvty 169 (176)
T COG4766 161 EAKFLYVTY 169 (176)
T ss_pred eEEEEEEEc
Confidence 755555544
No 68
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.11 E-value=1.2e-05 Score=73.57 Aligned_cols=64 Identities=20% Similarity=0.363 Sum_probs=53.0
Q ss_pred cCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 187 QPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 187 ~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
-|-...+. |.|..-|.+||++|.|.+.+||+.+.+++||+++++|++.|.+....+.....++|
T Consensus 56 ~~~~~~~~-H~H~~~el~~v~~G~g~~~v~~~~~~l~~Gdl~~I~~~~~H~~~~~~~~~~~~i~~ 119 (312)
T PRK13500 56 YPQDVFAE-HTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIY 119 (312)
T ss_pred CCCCCCCc-cccceEEEEEEEcCeEEEEECCEEEeecCCeEEEECCCCeecccccCCceEEEEEE
Confidence 34444554 67777799999999999999999999999999999999999999876655555554
No 69
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.0007 Score=59.37 Aligned_cols=168 Identities=18% Similarity=0.284 Sum_probs=111.2
Q ss_pred EEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEE-EEe---------CCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000 65 MYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSS-KLM---------VDSYTYLPPNFAHSLRAEGSATLVVFE 134 (259)
Q Consensus 65 ~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~-~L~---------~Gd~i~~p~~~~H~~~N~~~a~~l~v~ 134 (259)
..+.+|.+|.+......+.|.++.+++|++++.. +|+++ .++ +=|++|+|+|...++...+.+++-+-
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~-~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~~~vAvC- 108 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSA-HGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTDLEVAVC- 108 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEee-ccchHhhcccccccccCCCCCeEEecCCceEEEEeecceEEEEE-
Confidence 3477889998887777788999999999999998 77553 343 66999999999999998888877776
Q ss_pred EeccccCCCCcceeeccCCCCCCccc-CCc-eEEEEEeeCCCC-Ccc--eEEEEEEecCCccc-Cc-ceeec--------
Q 025000 135 RRYASLENHITEQIVGSTDKQPLLET-PGE-VFQLRKLLPQAV-PFD--FNIHIMDFQPGDFL-NV-KEVHY-------- 199 (259)
Q Consensus 135 ~~y~p~~g~~p~~~v~~~~di~~~~~-~g~-~~~~~~l~p~~~-~~~--~~~~~~t~~PG~~~-~~-~~~H~-------- 199 (259)
++|..|..|..+++.. |++.+.- .|. ...+.-++|++. ..+ ..+-++ -||+.. .| .|.|.
T Consensus 109 --~AP~~g~~~~~~i~p~-~~~~e~RGkG~NtR~VhNIlp~~~~~AdsLLVvEV~--Tp~Gn~SSYPPHKHD~d~~p~Es 183 (270)
T COG3718 109 --SAPGKGGLPTKLIKPE-DNGVEHRGKGRNTRYVHNILPEDAPVADSLLVVEVI--TPGGNWSSYPPHKHDEDNLPHES 183 (270)
T ss_pred --eCCCCCCcceEEeccc-cCCceeeccccceeeEEccCCCCCccccceEEEEEE--cCCCCcCCCCCCcccccCCccch
Confidence 4556665677776643 3333322 221 112223567654 344 444444 487752 11 34552
Q ss_pred -cceEEEEE----Ec---eEEEEeCC---EEEEccCCcEEEeCCC-----CceeEE
Q 025000 200 -NQHGLLLL----EG---QGIYRLGD---SWYPVQAGDVLWMAPF-----VPQWYA 239 (259)
Q Consensus 200 -~eh~~~il----~G---~g~~~~~g---~~~~v~~GD~i~~~~~-----~~H~~~ 239 (259)
-||+||-- +| +=+|++++ +..-|.-||++.+|-| .+|+|.
T Consensus 184 ~LEEtYYHrlnP~QGF~fQRVYTddrsLDEtmaV~~~dvvlVP~GYHPv~ap~GYd 239 (270)
T COG3718 184 YLEETYYHRLNPPQGFAFQRVYTDDRSLDETMAVENGDVVLVPKGYHPVGAPHGYD 239 (270)
T ss_pred hhhhhhhhccCccccceEEEEEcCCCcccceeeeecCCEEEecCCcCccccCCccc
Confidence 35666653 23 23677774 7788999999999865 456654
No 70
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.07 E-value=2.5e-05 Score=65.07 Aligned_cols=55 Identities=13% Similarity=0.328 Sum_probs=42.5
Q ss_pred ceeeccceEEEEEEceEEEEe---CCEEE--EccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000 195 KEVHYNQHGLLLLEGQGIYRL---GDSWY--PVQAGDVLWMAPFVPQWYAALGKTRTRYL 249 (259)
Q Consensus 195 ~~~H~~eh~~~il~G~g~~~~---~g~~~--~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 249 (259)
-|+|..+|+-||++|+|.+.+ +++|. .+++||+|.+|+|..|||.-+-+..++-|
T Consensus 87 EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~ai 146 (157)
T PF03079_consen 87 EHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAI 146 (157)
T ss_dssp -EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEE
T ss_pred eEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEE
Confidence 589999999999999999988 67887 89999999999999999995544444433
No 71
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.02 E-value=2.9e-05 Score=69.49 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=43.1
Q ss_pred ceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000 195 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL 241 (259)
Q Consensus 195 ~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~ 241 (259)
.|.|..-|.+||++|.+.+.+||+.+.+++||++|++||..|.+...
T Consensus 38 ~H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 38 LHQHDYYEFTLVLTGRYYQEINGKRVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred CcccccEEEEEEEeceEEEEECCEEEEECCCcEEEeCCCCccceeee
Confidence 47777779999999999999999999999999999999999977544
No 72
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.99 E-value=9.1e-06 Score=72.41 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=51.4
Q ss_pred CCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 188 PGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 188 PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
|....+. |.|..-+.+||++|.|.+.+||+.+++++||+++++|+..|.+.+..+..+.+++|
T Consensus 24 ~~~~~~~-H~H~~~ei~~v~~G~~~~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~~~~~~~~~ 86 (278)
T PRK13503 24 PQAAFPE-HHHDFHEIVIVEHGTGIHVFNGQPYTLSGGTVCFVRDHDRHLYEHTDNLCLTNVLY 86 (278)
T ss_pred ccccccc-cccCceeEEEEecCceeeEecCCcccccCCcEEEECCCccchhhhccCceEEEEee
Confidence 3344554 67888899999999999999999999999999999999999988775434444444
No 73
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.94 E-value=3.8e-05 Score=68.80 Aligned_cols=62 Identities=16% Similarity=0.303 Sum_probs=50.5
Q ss_pred cCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000 187 QPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 249 (259)
Q Consensus 187 ~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 249 (259)
.|.-..+. |.|..-+.+|+++|+|.+.+||+.+.+++||+++++|+..|.+...++....++
T Consensus 26 ~~~~~~~~-H~h~~~~l~~v~~G~~~~~i~~~~~~l~~g~l~li~~~~~H~~~~~~~~~~~~~ 87 (282)
T PRK13502 26 YPQDVFAE-HTHEFCELVMVWRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVNDLVLQNI 87 (282)
T ss_pred CCCCCCCc-cccceEEEEEEecCcEEEEECCEEEeecCCcEEEECCCCcccccccCCceEEEE
Confidence 44444554 667777999999999999999999999999999999999999987665433333
No 74
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.88 E-value=6.6e-05 Score=62.49 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=49.9
Q ss_pred EEEEEEe-cCCcccCcceeeccceEEEEEEceEEEEe--CCE--EEEccCCcEEEeCCCCceeEEeCCC
Q 025000 180 NIHIMDF-QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GDS--WYPVQAGDVLWMAPFVPQWYAALGK 243 (259)
Q Consensus 180 ~~~~~t~-~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~g~--~~~v~~GD~i~~~~~~~H~~~n~G~ 243 (259)
-+.++.+ -||....+ |.|..+|-+|+|+|...+.+ +|+ .+.+++||++++|+|++|+....++
T Consensus 28 ~~~v~~vgGpn~R~d~-H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 28 EFMVTVVGGPNARTDF-HDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred cEEEEEeCCCCCCccc-ccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 3445555 56666877 45667899999999999944 554 9999999999999999999987543
No 75
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.88 E-value=0.00011 Score=65.78 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=52.9
Q ss_pred cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEE
Q 025000 62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVF 133 (259)
Q Consensus 62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v 133 (259)
.+.++...-. +...+.|.|+.-|++||++|++++.+ +|+++.+++||.+++|||..|.... .++.+.+.+
T Consensus 23 ~~~~~~~~~~-~~~~~~H~H~~~ei~~v~~G~~~~~i-~~~~~~l~~g~l~~i~p~~~H~~~~~~~~~~~~~l 93 (278)
T PRK10296 23 NFHVFIYNKT-ESVSGLHQHDYYEFTLVLTGRYYQEI-NGKRVLLERGDFVFIPLGSHHQSFYEFGATRILNV 93 (278)
T ss_pred eEEEEEEehh-hcCCCCcccccEEEEEEEeceEEEEE-CCEEEEECCCcEEEeCCCCccceeeeCCCcEEEEE
Confidence 4444444322 32346778999999999999999999 9999999999999999999997654 334454433
No 76
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.85 E-value=5.6e-05 Score=69.06 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=54.5
Q ss_pred ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000 178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR 245 (259)
Q Consensus 178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~ 245 (259)
-+.+.+..-.|-...+ .|-|..-|.+|+++|.+.+.+||+.+.+++||+++++++.+|.+...++..
T Consensus 25 ~~~~~~~~~~~~~m~~-~HwH~e~Ei~yv~~G~~~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 25 YQRLEIEFRPPHIMPT-SHWHGQVEVNVPFDGDVEYLINNEKVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred CceeEEEeeCCCCCCC-CCccccEEEEEecCCcEEEEECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence 3445555555555544 478888899999999999999999999999999999999999988766543
No 77
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.85 E-value=6.5e-05 Score=67.75 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=48.3
Q ss_pred cCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000 71 QENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG 126 (259)
Q Consensus 71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~ 126 (259)
.+......|.|+.-|++||++|++++.+ +|+.+.+++||.+++|++..|.+....
T Consensus 26 ~~~~~~~~H~H~~~ei~~i~~G~~~~~i-~~~~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 26 YPQETFVEHTHQFCEIVIVWRGNGLHVL-NDHPYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CCCCCCccccccceeEEEEecCceEEEE-CCeeeeecCCeEEEEcCCCcccccccC
Confidence 3444456788999999999999999999 999999999999999999999998633
No 78
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.82 E-value=9.1e-05 Score=62.63 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=48.0
Q ss_pred cCCcccCcceeeccceEEEEEEceEEEEe--CC--EEEEccCCcEEEeCCCCceeEEeC
Q 025000 187 QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GD--SWYPVQAGDVLWMAPFVPQWYAAL 241 (259)
Q Consensus 187 ~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~g--~~~~v~~GD~i~~~~~~~H~~~n~ 241 (259)
-||....+| .|..+|-+|+|+|...+.+ +| +...+++||++++|+|++|+....
T Consensus 42 Gpn~r~d~H-~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~ 99 (177)
T PRK13264 42 GPNARTDFH-YDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQRE 99 (177)
T ss_pred cCCcccccc-cCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccC
Confidence 588888884 5778899999999999888 77 699999999999999999999774
No 79
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=97.78 E-value=0.00026 Score=64.82 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=44.3
Q ss_pred cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCce
Q 025000 177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQ 236 (259)
Q Consensus 177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H 236 (259)
.+|.++++++...... ....-..++++++|++.+..++...++++|+.+|+++++..
T Consensus 233 ~~F~~~~~~~~~~~~~---~~~~~~~il~v~~G~~~i~~~~~~~~l~~G~~~~ipa~~~~ 289 (302)
T TIGR00218 233 EYFSVYKWDISGKAEF---IQQQSALILSVLEGSGRIKSGGKTLPLKKGESFFIPAHLGP 289 (302)
T ss_pred CCeEEEEEEeCCceee---ccCCCcEEEEEEcceEEEEECCEEEEEecccEEEEccCCcc
Confidence 4677778887654221 12334578999999999999999999999999999999853
No 80
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.00056 Score=63.47 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=84.5
Q ss_pred EEEeCCcEEEeCCCCcEEEEeCCeEE-EE-----EEEEeccccCCCCccee-----ecc--CC--CCCCcccC---CceE
Q 025000 104 SKLMVDSYTYLPPNFAHSLRAEGSAT-LV-----VFERRYASLENHITEQI-----VGS--TD--KQPLLETP---GEVF 165 (259)
Q Consensus 104 ~~L~~Gd~i~~p~~~~H~~~N~~~a~-~l-----~v~~~y~p~~g~~p~~~-----v~~--~~--di~~~~~~---g~~~ 165 (259)
..|+||+.+|.-|+.+|.|-. +++- .. +|+. |..|... +.. .. +..+..+. +..
T Consensus 250 ~~L~PGEA~yL~AnepHAYls-GdcvECMA~SDNvIRA------GlTPK~~Dv~tL~smL~Y~~~~~~p~~~~~~~~~~- 321 (411)
T KOG2757|consen 250 VRLNPGEAIYLEANEPHAYLS-GDCVECMACSDNVIRA------GLTPKYIDVDTLCSMLTYKLTEQQPKLFPRSRLDG- 321 (411)
T ss_pred eecCCCceeeecCCCcceeec-CceeEEecccCceeec------cCCCccccHHHHHhHhcccccccccccCCccCCCC-
Confidence 589999999999999999985 2221 11 1221 2222221 111 11 11111111 111
Q ss_pred EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000 166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVPQWYAALGKT 244 (259)
Q Consensus 166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~~H~~~n~G~e 244 (259)
.....+|. -.+|.+...++.+|.+.-. ..-.-.-++.|++|+|++..+ +..+.|++||++|++++.+=.+..+.+-
T Consensus 322 ~~~~Y~Pp--i~eF~v~~~~v~~g~~~~~-~~~~~~SIllv~~G~g~l~~~t~~~~~v~rG~V~fI~a~~~i~~~~~sd~ 398 (411)
T KOG2757|consen 322 YVLLYDPP--IEEFAVLETKVPTGESYKF-PGVDGPSILLVLKGSGILKTDTDSKILVNRGDVLFIPANHPIHLSSSSDP 398 (411)
T ss_pred ceeEeCCC--CcceeEEEeecCCCceEEe-ecCCCceEEEEEecceEEecCCCCceeeccCcEEEEcCCCCceeeccCcc
Confidence 22233443 3467777888888766333 333344779999999999999 9999999999999999998877766544
Q ss_pred cEEEEEE
Q 025000 245 RTRYLLY 251 (259)
Q Consensus 245 ~~~fi~~ 251 (259)
=..|.++
T Consensus 399 ~~~yrAf 405 (411)
T KOG2757|consen 399 FLGYRAF 405 (411)
T ss_pred eeeeecc
Confidence 3334333
No 81
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.78 E-value=0.00018 Score=59.02 Aligned_cols=74 Identities=22% Similarity=0.369 Sum_probs=46.4
Q ss_pred cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000 62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR 136 (259)
Q Consensus 62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~ 136 (259)
.|.++.+ =.|+.+..-|...+|||+|-++|.+.+.+ .+| +...+++||.++.|++++|+-+-...+.-|++++.
T Consensus 33 ~f~VmvV-GGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~tiGLViEr~ 109 (151)
T PF06052_consen 33 DFIVMVV-GGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPADTIGLVIERK 109 (151)
T ss_dssp SEEEEEE-ESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT-EEEEEEE-
T ss_pred CeEEEEE-cCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCCcEEEEEEec
Confidence 4443333 34666666677889999999999998887 345 45799999999999999999776455667777665
No 82
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.77 E-value=7.4e-05 Score=66.92 Aligned_cols=62 Identities=21% Similarity=0.149 Sum_probs=51.5
Q ss_pred CCcccCcceeec-cceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 188 PGDFLNVKEVHY-NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 188 PG~~~~~~~~H~-~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
-|..++. |.|. +-+.+|+++|++.+.+||+.+.+++||+++++|++.|.+...++.....|+
T Consensus 32 ~~~~~~~-H~H~~~~~l~~~~~G~~~~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i~ 94 (287)
T TIGR02297 32 FGRNMPV-HFHDRYYQLHYLTEGSIALQLDEHEYSEYAPCFFLTPPSVPHGFVTDLDADGHVLT 94 (287)
T ss_pred cCCCCCC-cccccceeEEEEeeCceEEEECCEEEEecCCeEEEeCCCCccccccCCCcceEEEE
Confidence 3455665 5676 579999999999999999999999999999999999999877665544444
No 83
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.77 E-value=0.00015 Score=57.41 Aligned_cols=66 Identities=11% Similarity=0.162 Sum_probs=49.9
Q ss_pred cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEE
Q 025000 62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSAT 129 (259)
Q Consensus 62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~ 129 (259)
.++..+-+-.||.-. . .-+..||+++|+|+++++-.+||...++|||+++||+|..=.|+-.+++|
T Consensus 44 ~~~~GiWe~TpG~~r-~-~y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g~W~V~Etvr 109 (116)
T COG3450 44 QVETGIWECTPGKFR-V-TYDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFKGTWEVLETVR 109 (116)
T ss_pred CeeEeEEEecCccce-E-EcccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCeEEEEEeeeeE
Confidence 444555555566322 1 22458999999999999986688999999999999999999998744444
No 84
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=97.74 E-value=0.0011 Score=63.01 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=74.1
Q ss_pred EEEEeCCcEEEeCCCCcEEEEeCCeEEEEE-EEEeccccCCCCccee-------eccCCCCCCccc-----CCceEEEEE
Q 025000 103 SSKLMVDSYTYLPPNFAHSLRAEGSATLVV-FERRYASLENHITEQI-------VGSTDKQPLLET-----PGEVFQLRK 169 (259)
Q Consensus 103 ~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~-v~~~y~p~~g~~p~~~-------v~~~~di~~~~~-----~g~~~~~~~ 169 (259)
...|++||.+|+|+|.+|.|-.-.-+++.- ..-.|+ .|..|..+ +.+.+..+.... ..+. ....
T Consensus 238 ~v~l~pGeaifipAg~~HAyl~G~~iEima~SDnv~R--aGlT~K~idv~~ll~~l~f~~~~~~~~~~~~~~~~~-~~~~ 314 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLR--AGLTPKYIDIPELVANVKFEAKPANQLLTQPVKQGA-ELDF 314 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEcCCeEEEEEecCCcEEe--cCCCCCcccHHHHHhhcCCCCCCchhccccccccCC-eEEE
Confidence 468999999999999999987521222221 011111 22222211 111111111110 1111 1112
Q ss_pred eeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000 170 LLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT 244 (259)
Q Consensus 170 l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e 244 (259)
+.|.+ +|.+.+.++.++... . ...-..+++|++|++.+..+|+...+++|+.+|++++...-.. .|+.
T Consensus 315 ~~p~~---~F~~~~~~l~~~~~~-~--~~~~~~Illv~~G~~~i~~~~~~~~l~~G~~~fipa~~~~~~~-~g~~ 382 (389)
T PRK15131 315 PIPVD---DFAFSLHDLSDQPTT-L--SQQSAAILFCVEGEAVLWKGEQQLTLKPGESAFIAANESPVTV-SGHG 382 (389)
T ss_pred CCCCC---CcEEEEEEECCceEE-e--cCCCcEEEEEEcceEEEEeCCeEEEECCCCEEEEeCCCccEEE-eccc
Confidence 22322 466667777654211 1 1123378999999999999999999999999999998765433 4543
No 85
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.00073 Score=62.05 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=73.1
Q ss_pred cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEE----eccccCCCCccee-ec------cCCCCCCcccC----CceEE
Q 025000 102 VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFER----RYASLENHITEQI-VG------STDKQPLLETP----GEVFQ 166 (259)
Q Consensus 102 e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~----~y~p~~g~~p~~~-v~------~~~di~~~~~~----g~~~~ 166 (259)
....|+|||++|+|||++|.+-.- .++=+++ .|+... -|+.. ++ ....++..... ..+..
T Consensus 158 n~v~lkpGe~~fl~Agt~HA~~~G---~~lEvmqnSDntyR~yd--~~r~~d~~~lr~l~~~k~~~~~~~~~~~~~~~~~ 232 (312)
T COG1482 158 NRVKLKPGEAFFLPAGTPHAYLKG---LVLEVMQNSDNTYRVYD--TDRYDDIGELRELHLFKAKDVITLPTQPRKQGAE 232 (312)
T ss_pred cEEecCCCCEEEecCCCceeeccc---eEEEEEecCccEEEccc--ccccccchhHHhhhhccccchhhcCCcccccCce
Confidence 357899999999999999998741 1221111 111111 01111 11 11111111111 11222
Q ss_pred EEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCc-eeEEe
Q 025000 167 LRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP-QWYAA 240 (259)
Q Consensus 167 ~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~-H~~~n 240 (259)
...+.|.+ +|.+.++.+..=.... ++....+++|++|+|+++-+|+.+++++|+.+|++++.. =-++.
T Consensus 233 ~~~~v~~~---~F~l~~~~i~~~~~~~---~~~~~~il~v~eG~~~l~~~~~~~~l~~G~s~~ipa~~~~~~i~g 301 (312)
T COG1482 233 LTYPVPNE---DFALYKWDISGTAEFI---KQESFSILLVLEGEGTLIGGGQTLKLKKGESFFIPANDGPYTIEG 301 (312)
T ss_pred EEEecccc---ceEEEEEeccChhhhc---cCCCcEEEEEEcCeEEEecCCEEEEEcCCcEEEEEcCCCcEEEEe
Confidence 33344432 4566666665412221 222558999999999999999999999999999999944 33443
No 86
>PRK13500 transcriptional activator RhaR; Provisional
Probab=97.69 E-value=0.00019 Score=65.79 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=47.4
Q ss_pred CCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000 72 ENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG 126 (259)
Q Consensus 72 Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~ 126 (259)
|....+.|.|+.-|++||++|++.+.+ +|+.+.+++||.++++++..|.+....
T Consensus 57 ~~~~~~~H~H~~~el~~v~~G~g~~~v-~~~~~~l~~Gdl~~I~~~~~H~~~~~~ 110 (312)
T PRK13500 57 PQDVFAEHTHDFCELVIVWRGNGLHVL-NDRPYRITRGDLFYIHADDKHSYASVN 110 (312)
T ss_pred CCCCCCccccceEEEEEEEcCeEEEEE-CCEEEeecCCeEEEECCCCeecccccC
Confidence 333346778899999999999999999 999999999999999999999998633
No 87
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.63 E-value=0.00025 Score=63.44 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=47.6
Q ss_pred cCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000 71 QENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG 126 (259)
Q Consensus 71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~ 126 (259)
-|....+.|.|+.-+++||++|++++++ +|+++.+++||.+++|++..|.+...+
T Consensus 26 ~~~~~~~~H~h~~~~l~~v~~G~~~~~i-~~~~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 26 YPQDVFAEHTHEFCELVMVWRGNGLHVL-NERPYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCCCCccccceEEEEEEecCcEEEEE-CCEEEeecCCcEEEECCCCcccccccC
Confidence 3444346677889999999999999999 999999999999999999999987633
No 88
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.63 E-value=0.00022 Score=65.10 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=48.8
Q ss_pred cCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEE
Q 025000 71 QENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSAT 129 (259)
Q Consensus 71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~ 129 (259)
+|....+.|-|..=|++||++|++.+.+ +|+++.|.+||.++++++.+|.+...+.++
T Consensus 34 ~~~~m~~~HwH~e~Ei~yv~~G~~~~~i-~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 34 PPHIMPTSHWHGQVEVNVPFDGDVEYLI-NNEKVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred CCCCCCCCCccccEEEEEecCCcEEEEE-CCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence 3444456688899999999999999999 999999999999999999999987533343
No 89
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.58 E-value=0.00036 Score=50.70 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=42.7
Q ss_pred eEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe-CCEEEEccCCcEEEeCCCCcee
Q 025000 179 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQW 237 (259)
Q Consensus 179 ~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~-~g~~~~v~~GD~i~~~~~~~H~ 237 (259)
+..-+..-.||... . .-...|..|||+|+..+++ +|+.+.++|||++++|+|..--
T Consensus 7 ~~~g~w~~~pg~~~-~--~~~~~E~~~vleG~v~it~~~G~~~~~~aGD~~~~p~G~~~~ 63 (74)
T PF05899_consen 7 FSAGVWECTPGKFP-W--PYPEDEFFYVLEGEVTITDEDGETVTFKAGDAFFLPKGWTGT 63 (74)
T ss_dssp EEEEEEEEECEEEE-E--EESSEEEEEEEEEEEEEEETTTEEEEEETTEEEEE-TTEEEE
T ss_pred EEEEEEEECCceeE-e--eCCCCEEEEEEEeEEEEEECCCCEEEEcCCcEEEECCCCEEE
Confidence 44556667787632 2 2333688999999999999 8999999999999999997533
No 90
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.55 E-value=0.00015 Score=65.80 Aligned_cols=67 Identities=19% Similarity=0.315 Sum_probs=60.5
Q ss_pred EEEEecCCcccCcceeeccceEEEEEEceEEEE-eCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000 182 HIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR-LGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 249 (259)
Q Consensus 182 ~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~-~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 249 (259)
.+--+.||..-|- |.|.+.-..||.||+|.|+ +||+..+.++||||.+|.+..|.--|.|+||+.++
T Consensus 95 glQlilPGEvAps-HrHsqsAlRFvveG~Ga~T~VdGer~~M~~GDfilTP~w~wHdHgn~g~eP~iWl 162 (351)
T COG3435 95 GLQLILPGEVAPS-HRHNQSALRFVVEGKGAYTVVDGERTPMEAGDFILTPAWTWHDHGNEGTEPCIWL 162 (351)
T ss_pred hhheecCcccCCc-ccccccceEEEEeccceeEeecCceeeccCCCEEEccCceeccCCCCCCCceEEE
Confidence 3455789999886 8999999999999999775 79999999999999999999999999999999886
No 91
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.46 E-value=0.00021 Score=63.60 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=46.3
Q ss_pred CcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeC
Q 025000 74 ARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE 125 (259)
Q Consensus 74 ~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~ 125 (259)
...+.|.|+.-|++||++|.+++.+ +++.+.+++||.+++|++..|.+.+.
T Consensus 26 ~~~~~H~H~~~ei~~v~~G~~~~~i-~~~~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 26 AAFPEHHHDFHEIVIVEHGTGIHVF-NGQPYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred ccccccccCceeEEEEecCceeeEe-cCCcccccCCcEEEECCCccchhhhc
Confidence 3446678999999999999999999 99999999999999999999998863
No 92
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.45 E-value=0.00022 Score=59.49 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=35.9
Q ss_pred CCCCCCceEEEEEEECEEEEEE--cCCcE--EEEeCCcEEEeCCCCcEEEEe
Q 025000 77 ALPPHDVERFIFVVQGSAMLTN--ASGVS--SKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 77 ~~h~~~~Eef~yVl~G~l~v~v--~~ge~--~~L~~Gd~i~~p~~~~H~~~N 124 (259)
..|.|..||+-|+++|++-..+ .+++. ..+++||.+.+|+|+.|+|.-
T Consensus 86 ~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~ 137 (157)
T PF03079_consen 86 EEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTL 137 (157)
T ss_dssp S-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEE
T ss_pred eeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEc
Confidence 3567889999999999998877 33443 479999999999999999985
No 93
>PLN02288 mannose-6-phosphate isomerase
Probab=97.41 E-value=0.0013 Score=62.58 Aligned_cols=128 Identities=17% Similarity=0.174 Sum_probs=72.4
Q ss_pred EEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE-EEeccccCCCCccee-----ec--cCCCCCCcccCCceE--EEEEeeC
Q 025000 103 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVF-ERRYASLENHITEQI-----VG--STDKQPLLETPGEVF--QLRKLLP 172 (259)
Q Consensus 103 ~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v-~~~y~p~~g~~p~~~-----v~--~~~di~~~~~~g~~~--~~~~l~p 172 (259)
...|+||+.+|+|||.+|.|-.-.-.++.-- --..+ .|..|..+ .. +....+......... ..+...|
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl~G~~vE~MA~SDNVlR--aGLTpK~~Dv~~L~~~l~f~~~~~~~~~~~~~~~~~~~y~~ 329 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYLSGECIECMATSDNVVR--AGLTPKFRDVQTLCSMLTYKQGFPEILTGVPVDPYTTRYLP 329 (394)
T ss_pred eEecCCCCEEEecCCCCceecCCCeEEeeecCCceee--ecCCCccccHHHHHhhccCccCCcccccccccCCCceEECC
Confidence 4689999999999999999985222233210 00001 23222211 11 111111111110000 0112222
Q ss_pred CCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEE--EEccCCcEEEeCCCCc
Q 025000 173 QAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW--YPVQAGDVLWMAPFVP 235 (259)
Q Consensus 173 ~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~--~~v~~GD~i~~~~~~~ 235 (259)
. -.+|.+.++++.+|..... ....-..+++|++|++.+..++.. ..+++|+++|++++..
T Consensus 330 P--~~eF~v~~~~l~~~~~~~~-~~~~gp~Illv~~G~~~i~~~~~~~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 330 P--FDEFEVDHCDVPPGASVVF-PAVPGPSVFLVIEGEGVLSTGSSEDGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred C--CcceEEEEEEeCCCCeEee-cCCCCCEEEEEEcCEEEEecCCccceEEEeceeEEEEeCCCc
Confidence 2 3468888899988864221 112334789999999999887776 6699999999998754
No 94
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.36 E-value=0.0006 Score=61.03 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=44.5
Q ss_pred cCCCCCCC-ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000 75 RSALPPHD-VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 75 ~~~~h~~~-~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N 124 (259)
..+.|.|+ .-+++|+++|++.+.+ +|+.+.+++||.+++|++..|.+..
T Consensus 35 ~~~~H~H~~~~~l~~~~~G~~~~~~-~~~~~~l~~g~~~ii~~~~~H~~~~ 84 (287)
T TIGR02297 35 NMPVHFHDRYYQLHYLTEGSIALQL-DEHEYSEYAPCFFLTPPSVPHGFVT 84 (287)
T ss_pred CCCCcccccceeEEEEeeCceEEEE-CCEEEEecCCeEEEeCCCCcccccc
Confidence 34667787 6899999999999999 9999999999999999999999986
No 95
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.33 E-value=0.00039 Score=58.14 Aligned_cols=49 Identities=16% Similarity=0.449 Sum_probs=41.4
Q ss_pred ceeeccceEEEEEEceEEEEeCC---E--EEEccCCcEEEeCCCCceeEEeCCC
Q 025000 195 KEVHYNQHGLLLLEGQGIYRLGD---S--WYPVQAGDVLWMAPFVPQWYAALGK 243 (259)
Q Consensus 195 ~~~H~~eh~~~il~G~g~~~~~g---~--~~~v~~GD~i~~~~~~~H~~~n~G~ 243 (259)
-|+|..+|+-|+|+|.|+..+-+ + +..+.+||.|-+|||..|||.-+-+
T Consensus 90 EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~ 143 (181)
T COG1791 90 EHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTES 143 (181)
T ss_pred HhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCC
Confidence 47889999999999999987743 3 4677899999999999999986543
No 96
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=97.23 E-value=0.0017 Score=50.22 Aligned_cols=71 Identities=23% Similarity=0.298 Sum_probs=51.8
Q ss_pred EEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeC-CeEEEEEEEEeccccC
Q 025000 66 YLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE-GSATLVVFERRYASLE 141 (259)
Q Consensus 66 ~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~-~~a~~l~v~~~y~p~~ 141 (259)
+.+.++||+....+ ..+.+-++||++|+++ + +++...+.+|+.+++..+..-.+++. +.++++++. .+|+.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~--v-~~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~--GePl~ 74 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVE--V-GGEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLLG--GEPLN 74 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEE--E-TTTTEEEETTEEEEE-SECEEEEEESSSSEEEEEEE--E----
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEE--E-CCCcceECCCcEEEECCCceEEEEECCCCcEEEEEE--ccCCC
Confidence 46788888776543 4578999999999965 6 67768999999999998888889985 899999985 34554
No 97
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.20 E-value=0.0017 Score=58.04 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=56.3
Q ss_pred cCCCCCCcccC---C-ceEEEEEee--CCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEE---E
Q 025000 151 STDKQPLLETP---G-EVFQLRKLL--PQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSW---Y 220 (259)
Q Consensus 151 ~~~di~~~~~~---g-~~~~~~~l~--p~~~~-~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~---~ 220 (259)
..+|+.+.+.+ | .+...+.|. +++.+ +.+ ++.|.+|-..|. |.|...+..+||+|. +..+|.. .
T Consensus 4 ~~~d~~w~~~~p~~~~~~~~~~~L~gd~~~~g~~~~---~vkf~~g~~~pp-h~H~~~~~~~Vi~G~--~~~~~~~a~~~ 77 (251)
T PF14499_consen 4 HADDVKWGPLNPARGDKGPGAAVLWGDPTKDGPSGM---RVKFPAGFSSPP-HIHNADYRGTVISGE--LHNGDPKAAAM 77 (251)
T ss_dssp GS--EEEE--TTS-TTS--EEEEEEEE--TTS-EEE---EEEE-TT-EE---BEESS-EEEEEEESE--EEETTEE----
T ss_pred chhhccccccCCCCCCCCcceeeeecCcccCCcceE---EEEcCCCccCCC-cceeeeEEEEEEEeE--EEcCCCcccce
Confidence 45666666542 3 344566665 54444 333 567888988886 788888999999996 4456654 4
Q ss_pred EccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000 221 PVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK 252 (259)
Q Consensus 221 ~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k 252 (259)
.+.+|++.+.|.|..|.-.+.|++.+.|+-+-
T Consensus 78 ~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g 109 (251)
T PF14499_consen 78 WLPAGSYWFQPAGEPHITAAEGETNLLFIEIG 109 (251)
T ss_dssp -E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S
T ss_pred ecCCCceEeccCCCceeeeccCccEEEEEEeC
Confidence 59999999999999999999999999998543
No 98
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.20 E-value=0.00065 Score=54.96 Aligned_cols=49 Identities=29% Similarity=0.346 Sum_probs=42.7
Q ss_pred CcccCcceeeccc-eEEEEEEceEEEEeCC---EEEEccCCcEEEeCCCCcee
Q 025000 189 GDFLNVKEVHYNQ-HGLLLLEGQGIYRLGD---SWYPVQAGDVLWMAPFVPQW 237 (259)
Q Consensus 189 G~~~~~~~~H~~e-h~~~il~G~g~~~~~g---~~~~v~~GD~i~~~~~~~H~ 237 (259)
|+-.++||-|... |.+-+|+|++.+.++| ...+|+.||++.+|.|+.|.
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~ 104 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHC 104 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCcccc
Confidence 6777788888777 4578899999999985 78999999999999999985
No 99
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.16 E-value=0.0014 Score=52.87 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=38.8
Q ss_pred ecCCCcCCCC-CCCceEEEEEEECEEEEEEcCC---cEEEEeCCc-EEEeCCCCcEEEEe-CCeEEEEEE-EEeccc
Q 025000 70 MQENARSALP-PHDVERFIFVVQGSAMLTNASG---VSSKLMVDS-YTYLPPNFAHSLRA-EGSATLVVF-ERRYAS 139 (259)
Q Consensus 70 l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~g---e~~~L~~Gd-~i~~p~~~~H~~~N-~~~a~~l~v-~~~y~p 139 (259)
.++|..-+.| ++..+++++|++|++++.+.++ +++.|...+ .+++||+..|.+.| ...+.+|++ ...|.+
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~svlLv~as~~yd~ 116 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSEDSVLLVLASEPYDE 116 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT-EEEEEESS---G
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCCcEEEEEcCCCCCh
Confidence 3444334667 4678999999999999998222 567887775 89999999999998 444555554 444554
No 100
>COG1741 Pirin-related protein [General function prediction only]
Probab=97.13 E-value=0.07 Score=48.48 Aligned_cols=174 Identities=13% Similarity=0.078 Sum_probs=103.3
Q ss_pred EEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC--CcEEEEeC--C--eEEE--EEEEEecc
Q 025000 68 ANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN--FAHSLRAE--G--SATL--VVFERRYA 138 (259)
Q Consensus 68 ~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~--~~H~~~N~--~--~a~~--l~v~~~y~ 138 (259)
..+.||..-++| +.+-|.+-||++|+++=.--.|..-.++|||.-..-|| +.|+=.|. + +.+. +|+.-+..
T Consensus 49 ~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~lP~~ 128 (276)
T COG1741 49 DVLAPGRGFPPHPHRGLETVTYVLDGEIEHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNLPAA 128 (276)
T ss_pred ccccCCCcCCCCCCCCcEEEEEEEccEEEEeecCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecCCchh
Confidence 457888766777 45788888999999987753356679999999999885 56665563 2 2222 35543322
Q ss_pred ccCCCCcceeecc-CCCCCCcccCCceEEEEEeeCC-C-------CCcceEEEEEEecCCcccCcceeeccceEEEEEEc
Q 025000 139 SLENHITEQIVGS-TDKQPLLETPGEVFQLRKLLPQ-A-------VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEG 209 (259)
Q Consensus 139 p~~g~~p~~~v~~-~~di~~~~~~g~~~~~~~l~p~-~-------~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G 209 (259)
. +..+|..-... .+++|.... ++..+.+.-. . ... ..+-.+.+++|+.+..+ --+.+=.+|+++|
T Consensus 129 ~-k~~~P~yq~~~~~~~~p~~~~---g~~~rvi~G~~~g~~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G 202 (276)
T COG1741 129 D-KMIAPRYQHLAFPDEIPRVEL---GLTARVIAGRDGGLSSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEG 202 (276)
T ss_pred h-ccCCcccccccCcccCceeec---ceEEEEeccccCCcccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEe
Confidence 2 22234443333 334544443 2344433311 1 112 44556778888887764 3344455788888
Q ss_pred eEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 210 QGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 210 ~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
.+.+||+.- ..+|-+.+-.+..=.+...++.++++|++
T Consensus 203 --~l~v~g~~~--~~~~~l~i~~g~~i~l~a~~~~~a~vLL~ 240 (276)
T COG1741 203 --TLEVNGQHE--TDGDGLAILDGDEITLVADSPAGARVLLL 240 (276)
T ss_pred --EEEEccccc--ccccceEEecCCeEEEEecCCCCeEEEEE
Confidence 667777654 34444444444433566666777888876
No 101
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=97.10 E-value=0.052 Score=46.29 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=87.6
Q ss_pred cceEEEEecCCCC--CcEEEE--EEEecCCCcCCCCCCCceEEEEEEECE-EEEEEcCCc-E-EEEeCCcEEEeCCCCcE
Q 025000 48 NTLGAYLITPAMG--SHFVMY--LANMQENARSALPPHDVERFIFVVQGS-AMLTNASGV-S-SKLMVDSYTYLPPNFAH 120 (259)
Q Consensus 48 ~~~~~~l~sp~~g--~~f~~~--~~~l~Pg~~~~~h~~~~Eef~yVl~G~-l~v~v~~ge-~-~~L~~Gd~i~~p~~~~H 120 (259)
|.+..+.+.|..+ ++|... ..+++..+.-+ ...+.+..+.+|+|+ ++++. +++ . ..|.+++.+.|+.+.+-
T Consensus 16 G~T~Ei~~~P~~~~~~~F~wRiS~A~V~~~g~FS-~FpG~~R~l~~L~G~gl~L~~-~~~~~~~~l~p~~~~~F~G~~~v 93 (184)
T PF05962_consen 16 GTTREIAIYPEGSAKRDFDWRISIATVEADGPFS-DFPGYDRILTLLEGNGLRLTH-DGQQEHTLLQPFQPFAFDGDWPV 93 (184)
T ss_dssp EEEEEEEE-SSSCCCCC-SEEEEEEEE-SSEEE----TT-EEEEEEEESS-EEEEE-TTCSE-EEE-BT--EEEETTS-E
T ss_pred eEEEEEEEcCCCCccCCceEEEEEEEEcCCCCCC-CCCCCcEEEEEEeCCcEEEec-CCCcceeccCCCCcEEcCCCCeE
Confidence 3355556667543 355544 34444443311 247999999999999 99999 777 4 45999999999998887
Q ss_pred EEEe-CCeEEEEEEEEeccccCCCCcceeeccCCCCCCcccCCceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeec
Q 025000 121 SLRA-EGSATLVVFERRYASLENHITEQIVGSTDKQPLLETPGEVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHY 199 (259)
Q Consensus 121 ~~~N-~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~~~~~g~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~ 199 (259)
.-+. +++++-+-++.+ + +. -....+.+.... .. .+.. ...
T Consensus 94 ~~~l~~G~~~dfNlM~r--~--~~-------------------~~~~~~~~~~~~---~~---~~~~----------~~~ 134 (184)
T PF05962_consen 94 TSELLDGPVRDFNLMTR--R--GR-------------------WRARVRVLNQDG---TL---ELKL----------PAA 134 (184)
T ss_dssp EEEESSS-EEEEEEEE---T--TT-------------------EEEEEEEEEEEC---EE---EE-E----------E--
T ss_pred EEEECCCCEEEEEEEec--C--Cc-------------------ceEEEEEEeCCC---cE---EEee----------CCC
Confidence 7775 788888877643 2 10 011222221000 00 0000 111
Q ss_pred cceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEE
Q 025000 200 NQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRY 248 (259)
Q Consensus 200 ~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~f 248 (259)
..-.+|+++|+..+..+++.+.+.+||.+++.+ ++.+.-.++..+-+
T Consensus 135 ~~~l~~~~~G~~~i~~~~~~~~L~~~d~l~~~~--~~~~~l~~~g~ll~ 181 (184)
T PF05962_consen 135 STVLVYVLEGAWSITEGGNCISLSAGDLLLIDD--EEDLPLTGDGQLLW 181 (184)
T ss_dssp SEEEEEESSS-EEECCCEEEEEE-TT-EEEEES--EECEEEEEECCEEE
T ss_pred CEEEEEEeeCcEEEecCCCceEcCCCCEEEEeC--CCceEecCCeeEEE
Confidence 224489999998888888999999999999998 55554445444433
No 102
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.00 E-value=0.0034 Score=52.62 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=49.0
Q ss_pred CCCCCceEEEEEEECEEEEEE--cCCcEE--EEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEeccccCCCCcc
Q 025000 78 LPPHDVERFIFVVQGSAMLTN--ASGVSS--KLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYASLENHITE 146 (259)
Q Consensus 78 ~h~~~~Eef~yVl~G~l~v~v--~~ge~~--~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~p~~g~~p~ 146 (259)
.|.|.-+|+-|+++|++-..+ .+|+.+ .+.+||.+.+|+|+.|+|.-.+. .-+...+-|...+|++|.
T Consensus 90 EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~-~~f~AvRlF~~~~gWVa~ 161 (181)
T COG1791 90 EHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTES-PNFKAVRLFTEPEGWVAI 161 (181)
T ss_pred HhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCC-CcEEEEEEeeCCCCceee
Confidence 467899999999999998877 344554 67899999999999999985332 222333445555776443
No 103
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=96.92 E-value=0.0045 Score=49.97 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=46.0
Q ss_pred ceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC----EEEEccCCc-EEEeCCCCceeEEeCCCccEEEEEEe
Q 025000 178 DFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD----SWYPVQAGD-VLWMAPFVPQWYAALGKTRTRYLLYK 252 (259)
Q Consensus 178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g----~~~~v~~GD-~i~~~~~~~H~~~n~G~e~~~fi~~k 252 (259)
.+.+-+...++|..=+.|-|+..++.+++++|+..+.+++ +.+.+...+ .+++||+.+|+++|.++. +.-|++.
T Consensus 32 ~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~a 110 (131)
T PF05523_consen 32 KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVLA 110 (131)
T ss_dssp -EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEEEE
T ss_pred cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCC-cEEEEEc
Confidence 4555566667777677777778889999999999999876 566666654 899999999999999877 7777765
Q ss_pred e
Q 025000 253 D 253 (259)
Q Consensus 253 ~ 253 (259)
+
T Consensus 111 s 111 (131)
T PF05523_consen 111 S 111 (131)
T ss_dssp S
T ss_pred C
Confidence 4
No 104
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.81 E-value=0.0035 Score=56.32 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=38.6
Q ss_pred eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCC
Q 025000 202 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGK 243 (259)
Q Consensus 202 h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~ 243 (259)
...|+++|+|.+.+||+.+.+++||+++++|+.+|.+....+
T Consensus 51 ~i~~~~~G~~~~~~~~~~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 51 ILNLTIRGQGVIFNGGRAFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred EEEEEEeccEEEecCCeeEecCCCCEEEECCCCceeeccCCC
Confidence 567899999999999999999999999999999999877654
No 105
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=96.66 E-value=0.029 Score=47.84 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=40.0
Q ss_pred EEEEEEEecCCCcCC------CCC-------CCceEEEEEEECEEEEEE--cCC----cE--EEEeCCcEEEeCCCCcEE
Q 025000 63 FVMYLANMQENARSA------LPP-------HDVERFIFVVQGSAMLTN--ASG----VS--SKLMVDSYTYLPPNFAHS 121 (259)
Q Consensus 63 f~~~~~~l~Pg~~~~------~h~-------~~~Eef~yVl~G~l~v~v--~~g----e~--~~L~~Gd~i~~p~~~~H~ 121 (259)
+-.-+..+.||.-.. -|- -..-|+.+||+|++.+-+ .++ +. ..+++||.+++|++-.|+
T Consensus 50 L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~ 129 (182)
T PF06560_consen 50 LRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHR 129 (182)
T ss_dssp EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEE
T ss_pred EEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEE
Confidence 555677777775331 231 236899999999998877 234 33 589999999999999999
Q ss_pred EEeCC
Q 025000 122 LRAEG 126 (259)
Q Consensus 122 ~~N~~ 126 (259)
..|.+
T Consensus 130 tIN~g 134 (182)
T PF06560_consen 130 TINTG 134 (182)
T ss_dssp EEE-S
T ss_pred EEECC
Confidence 99944
No 106
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=96.65 E-value=0.011 Score=49.91 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=45.7
Q ss_pred CCcEEEEEEEecCCCcCCCCCCC-ceEEEEEEECEEEEEE---cCC---------cEEEEeCCcEEEeCCCCcEEEEe
Q 025000 60 GSHFVMYLANMQENARSALPPHD-VERFIFVVQGSAMLTN---ASG---------VSSKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 60 g~~f~~~~~~l~Pg~~~~~h~~~-~Eef~yVl~G~l~v~v---~~g---------e~~~L~~Gd~i~~p~~~~H~~~N 124 (259)
...|+++++...||..++.|-|+ ..=++.|++|+++-+. .++ +...+..|....++++.-|++.|
T Consensus 72 ~~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n 149 (175)
T PF05995_consen 72 DERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVEN 149 (175)
T ss_dssp GCT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEE
T ss_pred CCCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEecc
Confidence 35799999999999999999665 6778899999987654 222 23346677777789999999998
No 107
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.52 E-value=0.015 Score=52.19 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=39.2
Q ss_pred CCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000 81 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 81 ~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N 124 (259)
..+-.+.++++|++++.+ +++.+.+++||.+++|++.+|.+..
T Consensus 47 ~~~~~i~~~~~G~~~~~~-~~~~~~~~~g~~i~i~p~~~h~~~~ 89 (290)
T PRK10572 47 MKGYILNLTIRGQGVIFN-GGRAFVCRPGDLLLFPPGEIHHYGR 89 (290)
T ss_pred ccceEEEEEEeccEEEec-CCeeEecCCCCEEEECCCCceeecc
Confidence 345678899999999999 9999999999999999999999875
No 108
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=96.38 E-value=0.0096 Score=48.30 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=45.7
Q ss_pred CCceEEEEEEECEEEEEEc--CCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEeccc
Q 025000 81 HDVERFIFVVQGSAMLTNA--SGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYAS 139 (259)
Q Consensus 81 ~~~Eef~yVl~G~l~v~v~--~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~p 139 (259)
.+..|.+.|++|+..+.++ +|+...+++||.+.+|+|+-|+ ++...+-|.++. .|.|
T Consensus 62 s~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~-rl~sS~DF~VvG-aYp~ 120 (163)
T COG4297 62 SGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHC-RLHSSADFQVVG-AYPP 120 (163)
T ss_pred CCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCcccc-cccCCCCeEEEc-ccCC
Confidence 4678999999999999992 4678999999999999999996 344556676653 4555
No 109
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.34 E-value=0.05 Score=52.07 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000 80 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE 134 (259)
Q Consensus 80 ~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~ 134 (259)
..++++++||-+|++.+.. +=-...+++||+++||.|+.+++.-++++|.++++
T Consensus 143 NaDGD~Li~~q~G~l~l~T-e~G~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E 196 (424)
T PF04209_consen 143 NADGDELIFPQQGSLRLET-EFGRLDVRPGDYVVIPRGTRFRVELPGPARGYIIE 196 (424)
T ss_dssp ESSEEEEEEEEES-EEEEE-TTEEEEE-TTEEEEE-TT--EEEE-SSSEEEEEEE
T ss_pred cCCCCEEEEEEECCEEEEe-cCeeEEEcCCeEEEECCeeEEEEEeCCCceEEEEE
Confidence 4789999999999999998 75678999999999999999998877999999987
No 110
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=96.33 E-value=0.013 Score=45.14 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=48.3
Q ss_pred EEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 183 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 183 ~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
-++++||+.+-..-...++..+|+++|.+ .++|+..++.+|+.+++.++..=.+.+.+ ++++||++
T Consensus 3 di~l~~g~~~~~~~~~~~~~~iyv~~G~~--~v~~~~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll 68 (104)
T PF05726_consen 3 DIKLEPGASFTLPLPPGHNAFIYVLEGSV--EVGGEEDPLEAGQLVVLEDGDEIELTAGE-EGARFLLL 68 (104)
T ss_dssp EEEE-TT-EEEEEEETT-EEEEEEEESEE--EETTTTEEEETTEEEEE-SECEEEEEESS-SSEEEEEE
T ss_pred EEEECCCCEEEeecCCCCEEEEEEEECcE--EECCCcceECCCcEEEECCCceEEEEECC-CCcEEEEE
Confidence 46789999976543456778899999995 55777799999999999977777777664 77777765
No 111
>PF12852 Cupin_6: Cupin
Probab=96.31 E-value=0.026 Score=47.56 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=37.5
Q ss_pred ceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEEe
Q 025000 83 VERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 83 ~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~N 124 (259)
.-.|.+|++|++.+.+ ++ +...|++||.+++|.|.+|.+..
T Consensus 35 ~~~fh~V~~G~~~l~~-~~~~~~~~L~~GDivllp~g~~H~l~~ 77 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRV-PGGGEPIRLEAGDIVLLPRGTAHVLSS 77 (186)
T ss_pred ceEEEEEECCeEEEEE-cCCCCeEEecCCCEEEEcCCCCeEeCC
Confidence 4789999999999998 55 78999999999999999999975
No 112
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=96.30 E-value=0.023 Score=44.33 Aligned_cols=61 Identities=20% Similarity=0.085 Sum_probs=49.1
Q ss_pred CcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCC--ceeEEeCCC-ccEEEE
Q 025000 189 GDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFV--PQWYAALGK-TRTRYL 249 (259)
Q Consensus 189 G~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~--~H~~~n~G~-e~~~fi 249 (259)
+.-++.|.|...|-.-|||+|+....+. |....+++||+-||.+|- .|+=.|.++ ++++.|
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHRDSLGNRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEEETTSEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEECCCCCeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 5566777888888888999999999987 677899999999998764 499999988 888776
No 113
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=96.21 E-value=0.035 Score=51.81 Aligned_cols=72 Identities=14% Similarity=0.275 Sum_probs=59.3
Q ss_pred CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcC-CcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE
Q 025000 60 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNAS-GVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVF 133 (259)
Q Consensus 60 g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~-ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v 133 (259)
-..|++..+.+++|.+.-.+.-++--++.|++|+..+.. + +....++.||.+|||++.+-.+...+++ ++.+
T Consensus 330 i~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~-~t~~~~~v~rG~V~fI~a~~~i~~~~~sd~-~~~y 402 (411)
T KOG2757|consen 330 IEEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKT-DTDSKILVNRGDVLFIPANHPIHLSSSSDP-FLGY 402 (411)
T ss_pred CcceeEEEeecCCCceEEeecCCCceEEEEEecceEEec-CCCCceeeccCcEEEEcCCCCceeeccCcc-eeee
Confidence 458999999999977665555677889999999999998 7 8889999999999999999988874443 4443
No 114
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=96.15 E-value=0.01 Score=49.54 Aligned_cols=63 Identities=21% Similarity=0.429 Sum_probs=49.1
Q ss_pred EEEEEecCCcccCc---------ceeeccceEEEEEEceEEEEeC---CEE--EEccCCcEEEeCCCCceeEEeCCC
Q 025000 181 IHIMDFQPGDFLNV---------KEVHYNQHGLLLLEGQGIYRLG---DSW--YPVQAGDVLWMAPFVPQWYAALGK 243 (259)
Q Consensus 181 ~~~~t~~PG~~~~~---------~~~H~~eh~~~il~G~g~~~~~---g~~--~~v~~GD~i~~~~~~~H~~~n~G~ 243 (259)
|.++++-|+...-+ .|.|..||+=|||+|.|-+.+. +.| +.|++||.|++|+|.-|-|.-+-+
T Consensus 65 ~d~~~~~~e~~~nfdeKvk~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 65 MDICTVCPETLPNFDEKVKSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred eeEEEEchhhcccHHHHHHHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCch
Confidence 44566666654333 5678899999999999988765 555 568999999999999999986644
No 115
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=95.99 E-value=0.036 Score=46.28 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=53.2
Q ss_pred ceEEEEEEecCCcccCcceeeccc-----eEEEEE-EceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 178 DFNIHIMDFQPGDFLNVKEVHYNQ-----HGLLLL-EGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 178 ~~~~~~~t~~PG~~~~~~~~H~~e-----h~~~il-~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
-..++...|.||+.|.. |..... |.-++. .....++++|+.+..++|.++++.+-.+|+..|.|+++ +.+++
T Consensus 79 ~~~~~~s~l~pg~~I~p-H~d~~~~~lR~Hl~L~~p~~~~~~~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~-Rv~L~ 156 (163)
T PF05118_consen 79 LGRVRFSRLPPGTHIKP-HRDPTNLRLRLHLPLIVPNPGCYIRVGGETRHWREGECWVFDDSFEHEVWNNGDED-RVVLI 156 (163)
T ss_dssp CEEEEEEEEECTEEEEE-E-SS-TTEEEEEEEEC--STTEEEEETTEEEB--CTEEEEE-TTS-EEEEESSSS--EEEEE
T ss_pred hhhEEEEEECCCCEECC-eeCCCCcceEEEEEEEcCCCCeEEEECCeEEEeccCcEEEEeCCEEEEEEeCCCCC-EEEEE
Confidence 34578888999999975 444432 444556 47899999999999999999999999999999999865 44444
Q ss_pred eecCC
Q 025000 252 KDVNR 256 (259)
Q Consensus 252 k~~nr 256 (259)
=|+-|
T Consensus 157 vD~~h 161 (163)
T PF05118_consen 157 VDFWH 161 (163)
T ss_dssp EEEE-
T ss_pred EEeec
Confidence 55543
No 116
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=95.54 E-value=0.44 Score=41.51 Aligned_cols=178 Identities=18% Similarity=0.234 Sum_probs=100.7
Q ss_pred cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEecc
Q 025000 62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYA 138 (259)
Q Consensus 62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~ 138 (259)
.|.++.+ =.|+.+..-|...+||++|=++|.+.+.+ ..| +...++.||++..|+.++|+-.-=....=|++++.=.
T Consensus 33 qlkVm~V-GGPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFantvGlVVEr~R~ 111 (279)
T KOG3995|consen 33 QLKVMFV-GGPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRL 111 (279)
T ss_pred CeEEEEe-cCCCcccccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhccceeEEEEeccC
Confidence 4555554 24555566677889999999999998887 223 4578999999999999999743211111223322211
Q ss_pred ccCCCCcceeeccCC--------------------------CCCCccc-CC-ce------EEEEEee---C---------
Q 025000 139 SLENHITEQIVGSTD--------------------------KQPLLET-PG-EV------FQLRKLL---P--------- 172 (259)
Q Consensus 139 p~~g~~p~~~v~~~~--------------------------di~~~~~-~g-~~------~~~~~l~---p--------- 172 (259)
-++-.--+..+++-. +.+.+.= ++ +. ...+++. |
T Consensus 112 ~tE~D~iR~yvg~~~~vlfE~wfy~~Dlgtql~p~I~eF~~s~E~rTgkp~~~~~~C~~pf~~~t~~~~~P~s~~~~~~~ 191 (279)
T KOG3995|consen 112 ETELDGLRYYVGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEEYRTGKPIPDQLLCEPPFPLSTRSIMEPMSLDAWLDS 191 (279)
T ss_pred CCccceEEEEeccchhhHHHHHhhHHhhhhhhHHHHHHHhcchhhhcCCCCCCccccCCCccccccccccccchhHHHHH
Confidence 111001111122211 1111100 00 00 0011110 1
Q ss_pred ---------CCC-CcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCC
Q 025000 173 ---------QAV-PFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALG 242 (259)
Q Consensus 173 ---------~~~-~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G 242 (259)
-.. +..+...++-+--|++-.. ....+=-++.++|..++..+|..+-+++...+.++++..-|..-.|
T Consensus 192 h~~e~~~gp~~~~g~~y~t~v~~~g~gs~~~~--~~~v~~~~w~~e~s~vv~~~g~~~~~~~~s~~~~~~~s~~~~~~~g 269 (279)
T KOG3995|consen 192 HHRELQAGPLSLFGDTYETQVIAYGQGSSEGL--RQNVDVWLWQLEGSSVVTMGGRRLSLAPDSLLVLAGTSYAWERTQG 269 (279)
T ss_pred HHHHHhcCCeeeeCccceeeEEEeccccchhh--cCceEEEEEEecCceEEeecCeEEeeCCcceEEEcCcchhhhhccC
Confidence 111 2234555666666665432 3333344788999999999999999999999999998766554444
No 117
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=95.51 E-value=0.1 Score=47.03 Aligned_cols=81 Identities=14% Similarity=0.299 Sum_probs=61.0
Q ss_pred EeeCCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC-EEEEccCC--------cEEEeCCCCceeE
Q 025000 169 KLLPQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD-SWYPVQAG--------DVLWMAPFVPQWY 238 (259)
Q Consensus 169 ~l~p~~~~-~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g-~~~~v~~G--------D~i~~~~~~~H~~ 238 (259)
.+.|+..+ .-+.+..++|++|..... .....|=++.+|+|++.+..|| +++.+..- |++|++.|..=-+
T Consensus 16 ~i~~~~~g~~~~~~~~l~L~~g~~~~~-~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i 94 (261)
T PF04962_consen 16 SITPENAGWMYMGFGVLRLEAGESLEF-ELERRELGVVNLGGKATVTVDGEEFYELGGRESVFDGPPDALYVPRGTKVVI 94 (261)
T ss_dssp ECTCCCCCCCCBECCCEEEECCHCCCC-CCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGGS--EEEEE-TT--EEE
T ss_pred EECCCccCccccceEEEEecCCCEEec-cCCCcEEEEEEeCCEEEEEeCCceEEEecccccccCCCCcEEEeCCCCeEEE
Confidence 34465544 456788999999999876 5767778899999999999999 99999988 9999999999888
Q ss_pred EeCCCccEEEEEEe
Q 025000 239 AALGKTRTRYLLYK 252 (259)
Q Consensus 239 ~n~G~e~~~fi~~k 252 (259)
.+..+ ++|.+.+
T Consensus 95 ~a~~~--ae~~~~s 106 (261)
T PF04962_consen 95 FASTD--AEFAVCS 106 (261)
T ss_dssp EESST--EEEEEEE
T ss_pred EEcCC--CEEEEEc
Confidence 87544 6665543
No 118
>PF12852 Cupin_6: Cupin
Probab=95.49 E-value=0.024 Score=47.76 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=36.5
Q ss_pred eEEEEEEceEEEEeCC--EEEEccCCcEEEeCCCCceeEEeCCC
Q 025000 202 HGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGK 243 (259)
Q Consensus 202 h~~~il~G~g~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~ 243 (259)
.-.+|++|++.+.++| +...+++||+++++.|.+|.+....+
T Consensus 37 ~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 37 SFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred EEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence 4468999999999876 89999999999999999999964433
No 119
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=95.45 E-value=0.13 Score=40.68 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=40.2
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCCCc
Q 025000 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPFVP 235 (259)
Q Consensus 181 ~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~~~ 235 (259)
..+..=.||.. +-+-.+.|..+||+|+++|+-+ |+-++++|||.+++++|-.
T Consensus 47 ~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T~d~Ge~v~~~aGD~~~~~~G~~ 99 (116)
T COG3450 47 TGIWECTPGKF---RVTYDEDEFCHILEGRVEVTPDGGEPVEVRAGDSFVFPAGFK 99 (116)
T ss_pred EeEEEecCccc---eEEcccceEEEEEeeEEEEECCCCeEEEEcCCCEEEECCCCe
Confidence 34666668874 2233344778999999999865 6899999999999999954
No 120
>PLN02288 mannose-6-phosphate isomerase
Probab=95.40 E-value=0.047 Score=52.00 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=46.5
Q ss_pred CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcE--EEEeCCcEEEeCCCCc
Q 025000 60 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVS--SKLMVDSYTYLPPNFA 119 (259)
Q Consensus 60 g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~--~~L~~Gd~i~~p~~~~ 119 (259)
-..|.+..+++.++.........+-.+++|++|++++.. ++++ ..|++|+++|+|++..
T Consensus 331 ~~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~-~~~~~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 331 FDEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLST-GSSEDGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred CcceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEec-CCccceEEEeceeEEEEeCCCc
Confidence 457999889998775433323566789999999999987 6666 6799999999999765
No 121
>PRK10579 hypothetical protein; Provisional
Probab=95.38 E-value=0.099 Score=39.77 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=45.8
Q ss_pred EEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEE
Q 025000 68 ANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLV 131 (259)
Q Consensus 68 ~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l 131 (259)
-.|.||.- +. .-...|..-|++|++++.+ .| ++.+..+|+++.+|++....++....+..+
T Consensus 28 GVm~pGey-~F-~T~~~E~MeivsG~l~V~L-pg~~ew~~~~aG~sF~VpanssF~l~v~~~t~Y~ 90 (94)
T PRK10579 28 GVMAEGEY-TF-STAEPEEMTVISGALNVLL-PGATDWQVYEAGEVFNVPGHSEFHLQVAEPTSYL 90 (94)
T ss_pred EEEeeeEE-EE-cCCCcEEEEEEeeEEEEEC-CCCcccEEeCCCCEEEECCCCeEEEEECcceeeE
Confidence 34557642 22 1235688899999999999 55 457999999999999999999976555444
No 122
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=95.36 E-value=0.048 Score=49.12 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=38.8
Q ss_pred eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000 202 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTR 245 (259)
Q Consensus 202 h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~ 245 (259)
..+++++|++.+..+|..+.++|||+++++++.+|.+...++..
T Consensus 73 ~l~~~~~G~~~~~~~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~ 116 (302)
T PRK09685 73 FTVFQLSGHAIIEQDDRQVQLAAGDITLIDASRPCSIYPQGLSE 116 (302)
T ss_pred EEEEEecceEEEEECCeEEEEcCCCEEEEECCCCcEeecCCCce
Confidence 34577999999999999999999999999999999998766543
No 123
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=95.35 E-value=0.12 Score=39.34 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=43.1
Q ss_pred EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEE
Q 025000 67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVV 132 (259)
Q Consensus 67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~ 132 (259)
+-.|.||.-. . .-...|..-|++|++++.+ .| ++.+..+|+++-+|++....++...++..++
T Consensus 27 lGVm~pGeY~-F-~T~~~E~M~vvsG~l~V~l-pg~~ew~~~~aGesF~VpanssF~v~v~~~~~Y~C 91 (94)
T PF06865_consen 27 LGVMLPGEYT-F-GTSAPERMEVVSGELEVKL-PGEDEWQTYSAGESFEVPANSSFDVKVKEPTAYLC 91 (94)
T ss_dssp EEEE-SECEE-E-EESS-EEEEEEESEEEEEE-TT-SS-EEEETT-EEEE-TTEEEEEEESS-EEEEE
T ss_pred EEEEeeeEEE-E-cCCCCEEEEEEEeEEEEEc-CCCcccEEeCCCCeEEECCCCeEEEEECcceeeEE
Confidence 4456687522 1 1245788899999999999 44 4689999999999999999999866555443
No 124
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=95.27 E-value=0.038 Score=46.17 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=40.5
Q ss_pred CCCCCCceEEEEEEECEEEEEE--cCCcE--EEEeCCcEEEeCCCCcEEEEe
Q 025000 77 ALPPHDVERFIFVVQGSAMLTN--ASGVS--SKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 77 ~~h~~~~Eef~yVl~G~l~v~v--~~ge~--~~L~~Gd~i~~p~~~~H~~~N 124 (259)
+.|.|.-||+-|+++|..-..+ .++++ .-++.||.+.+|+|+-|+|.-
T Consensus 87 EEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTt 138 (179)
T KOG2107|consen 87 EEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTT 138 (179)
T ss_pred HHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeec
Confidence 4567899999999999998877 23444 478999999999999999985
No 125
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=95.23 E-value=0.22 Score=43.99 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=74.4
Q ss_pred CceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC-CcEEEEe---CCeEEEEEEEEeccccCCCCcceeeccCCCCCC
Q 025000 82 DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN-FAHSLRA---EGSATLVVFERRYASLENHITEQIVGSTDKQPL 157 (259)
Q Consensus 82 ~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~-~~H~~~N---~~~a~~l~v~~~y~p~~g~~p~~~v~~~~di~~ 157 (259)
..|--++=+-|..++++ ||++++|+..|.+|+-.| ..-.|.. ..+|+|.++..+ +.-.-|...+. .+|..+
T Consensus 75 RRElgiINIG~~G~i~v-~g~~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~sap---AH~s~ptk~~~-~~~a~p 149 (278)
T COG3717 75 RRELGIINIGGPGTITV-DGQEYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVSAP---AHTSYPTKKVT-LAEAKP 149 (278)
T ss_pred eeeeeEEeeCCCceEEE-CCEEEEeccccEEEEecCccceEEeccCCCCcceEEEeecc---ccccCCccccc-HHHcCc
Confidence 34444555677889999 999999999999999998 4445664 347889888533 33222433333 444444
Q ss_pred cccC-----CceEEEEE-eeCCCCCc-ceEEEEEEecCCcc---cCcceeec-cceEEE
Q 025000 158 LETP-----GEVFQLRK-LLPQAVPF-DFNIHIMDFQPGDF---LNVKEVHY-NQHGLL 205 (259)
Q Consensus 158 ~~~~-----g~~~~~~~-l~p~~~~~-~~~~~~~t~~PG~~---~~~~~~H~-~eh~~~ 205 (259)
.... ..+ ++-+ +.|+-... ...|-...|+||.- +|. |.|. -.|.|+
T Consensus 150 ~~lG~~~tSN~R-TI~kyihpd~~~scQL~mG~T~L~pgsvWNTMP~-H~HdRRmE~Yl 206 (278)
T COG3717 150 VTLGDDATSNRR-TINKYIHPDVLESCQLSMGLTMLAPGSVWNTMPC-HVHDRRMEVYL 206 (278)
T ss_pred cccccccccccc-eeeeeeccchhhhhhhhhcceeecCCCccccCCc-cccccceeEEE
Confidence 4431 233 4444 44776665 47788889999985 675 4553 225543
No 126
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.19 E-value=0.15 Score=48.94 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=53.5
Q ss_pred cCCCcCCCC---CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEEEe
Q 025000 71 QENARSALP---PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFERR 136 (259)
Q Consensus 71 ~Pg~~~~~h---~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~~~ 136 (259)
.++.+.... ..++|+++++-+|.+.+.. +=-...+++||+++||.|+.+++.- ++++|.++++.-
T Consensus 132 ~~n~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~ 200 (435)
T PLN02658 132 VANKSMDDCAFCNADGDFLIVPQQGRLWIKT-ELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF 200 (435)
T ss_pred eCCCCCccceeecCCCCEEEEEEeCCEEEEE-eccceEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence 466665332 4789999999999999987 5445789999999999999999984 779999988755
No 127
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=95.16 E-value=0.17 Score=45.52 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=40.3
Q ss_pred CceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEE
Q 025000 82 DVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLV 131 (259)
Q Consensus 82 ~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l 131 (259)
+.-.++++++|++.+.. +|+++.+.+||.+++|++.+|.+...+..+.+
T Consensus 70 ~~~~l~~~~~G~~~~~~-~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~~~ 118 (302)
T PRK09685 70 AHFFTVFQLSGHAIIEQ-DDRQVQLAAGDITLIDASRPCSIYPQGLSEQI 118 (302)
T ss_pred CcEEEEEEecceEEEEE-CCeEEEEcCCCEEEEECCCCcEeecCCCceeE
Confidence 34456678999999999 99999999999999999999998753433433
No 128
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=95.11 E-value=0.067 Score=44.63 Aligned_cols=77 Identities=6% Similarity=0.057 Sum_probs=52.0
Q ss_pred cEEEEEEEecCCCcCCCCCCC-----ceEEEEEE-ECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEE
Q 025000 62 HFVMYLANMQENARSALPPHD-----VERFIFVV-QGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE 134 (259)
Q Consensus 62 ~f~~~~~~l~Pg~~~~~h~~~-----~Eef~yVl-~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~ 134 (259)
....+...+.||+...+|... .-++-.+. ...+.+.+ +|+++..++|.+++|....+|...| ....|++++.
T Consensus 79 ~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v-~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L~v 157 (163)
T PF05118_consen 79 LGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV-GGETRHWREGECWVFDDSFEHEVWNNGDEDRVVLIV 157 (163)
T ss_dssp CEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE-TTEEEB--CTEEEEE-TTS-EEEEESSSS-EEEEEE
T ss_pred hhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE-CCeEEEeccCcEEEEeCCEEEEEEeCCCCCEEEEEE
Confidence 345678889999888777422 22344445 36789999 9999999999999999999999999 4457887776
Q ss_pred Eeccc
Q 025000 135 RRYAS 139 (259)
Q Consensus 135 ~~y~p 139 (259)
.-..|
T Consensus 158 D~~hP 162 (163)
T PF05118_consen 158 DFWHP 162 (163)
T ss_dssp EEE-T
T ss_pred EeecC
Confidence 54443
No 129
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=94.99 E-value=0.2 Score=45.92 Aligned_cols=69 Identities=16% Similarity=0.288 Sum_probs=50.1
Q ss_pred CCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEE
Q 025000 60 GSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVV 132 (259)
Q Consensus 60 g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~ 132 (259)
...|.+.+.++... ......++-.+++|++|++++.. ++++..|++|+++++|++...... .+.++++.
T Consensus 232 ~~~F~~~~~~~~~~--~~~~~~~~~~il~v~~G~~~i~~-~~~~~~l~~G~~~~ipa~~~~~~i-~g~~~~~~ 300 (302)
T TIGR00218 232 TEYFSVYKWDISGK--AEFIQQQSALILSVLEGSGRIKS-GGKTLPLKKGESFFIPAHLGPFTI-EGECEAIV 300 (302)
T ss_pred CCCeEEEEEEeCCc--eeeccCCCcEEEEEEcceEEEEE-CCEEEEEecccEEEEccCCccEEE-EeeEEEEE
Confidence 45788888887543 11123457788999999999998 899999999999999999854322 23445543
No 130
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=94.87 E-value=0.23 Score=45.78 Aligned_cols=64 Identities=16% Similarity=0.311 Sum_probs=49.4
Q ss_pred CCCCcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCC-CcEEEEe
Q 025000 58 AMGSHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPN-FAHSLRA 124 (259)
Q Consensus 58 ~~g~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~-~~H~~~N 124 (259)
.....|...+..+.. ....-.+.+=.+++|++|++++.. +|++..|++|+++++|+. .+..+..
T Consensus 237 v~~~~F~l~~~~i~~--~~~~~~~~~~~il~v~eG~~~l~~-~~~~~~l~~G~s~~ipa~~~~~~i~g 301 (312)
T COG1482 237 VPNEDFALYKWDISG--TAEFIKQESFSILLVLEGEGTLIG-GGQTLKLKKGESFFIPANDGPYTIEG 301 (312)
T ss_pred ccccceEEEEEeccC--hhhhccCCCcEEEEEEcCeEEEec-CCEEEEEcCCcEEEEEcCCCcEEEEe
Confidence 345678888887764 111113457889999999999998 999999999999999999 5666654
No 131
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=94.77 E-value=0.13 Score=41.60 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=46.5
Q ss_pred CCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000 81 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR 136 (259)
Q Consensus 81 ~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~ 136 (259)
.+.=-+.+.++|.+.++. +|++..+.+||.+.++++.++.+...+..+.+.+.-+
T Consensus 53 ~~~~~l~~~~~G~~~~~~-~g~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l~ip 107 (172)
T PF14525_consen 53 DDHYLLVLPLSGSARIEQ-GGREVELAPGDVVLLDPGQPYRLEFSAGCRQLSLRIP 107 (172)
T ss_pred CCEEEEEEEccCCEEEEE-CCEEEEEcCCeEEEEcCCCCEEEEECCCccEEEEEEC
Confidence 345667788999999999 9999999999999999999999998666677666544
No 132
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.75 E-value=0.22 Score=47.66 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=53.1
Q ss_pred cCCCcCCCC---CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEe
Q 025000 71 QENARSALP---PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERR 136 (259)
Q Consensus 71 ~Pg~~~~~h---~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~ 136 (259)
.++.+.... ..++|+++++-+|.+.+.. +=-...+++||++.||.|+.+++.-.+++|.++++.-
T Consensus 133 ~~~~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~ 200 (429)
T TIGR01015 133 LCNASMENRAFYNADGDFLIVPQQGALLITT-EFGRLLVEPNEICVIPRGVRFRVTVLEPARGYICEVY 200 (429)
T ss_pred eCCCCcccceeeccCCCEEEEEEeCcEEEEE-eccceEecCCCEEEecCccEEEEeeCCCceEEEEecc
Confidence 456665332 4789999999999999987 5445799999999999999999886688999887643
No 133
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=94.70 E-value=0.23 Score=47.62 Aligned_cols=64 Identities=19% Similarity=0.115 Sum_probs=52.5
Q ss_pred cCCCcCCCC---CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEEE
Q 025000 71 QENARSALP---PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFER 135 (259)
Q Consensus 71 ~Pg~~~~~h---~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~~ 135 (259)
.++.+.... ..++|+++++-+|++.+.. +=-...+++||+++||.|+.+++.- ++++|.++++.
T Consensus 139 ~~n~sM~~~~f~NaDGD~Livpq~G~l~i~T-EfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~ 206 (438)
T PRK05341 139 AANRSMQDRYFYNADGELLIVPQQGRLRLAT-ELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVCEN 206 (438)
T ss_pred eCCCCcccceeecCCCCEEEEEEeCCEEEEE-eccceEecCCCEEEEcCccEEEEecCCCCeeEEEEEe
Confidence 456555322 4789999999999999987 5446799999999999999999985 77999988864
No 134
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=94.69 E-value=0.19 Score=47.85 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=45.8
Q ss_pred CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEE
Q 025000 61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLR 123 (259)
Q Consensus 61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~ 123 (259)
..|.+....+.++ .... ...+-.+++|++|++++.. ++++..|++|+++++|++......
T Consensus 319 ~~F~~~~~~l~~~-~~~~-~~~~~~Illv~~G~~~i~~-~~~~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 319 DDFAFSLHDLSDQ-PTTL-SQQSAAILFCVEGEAVLWK-GEQQLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CCcEEEEEEECCc-eEEe-cCCCcEEEEEEcceEEEEe-CCeEEEECCCCEEEEeCCCccEEE
Confidence 4688888887653 1111 1245689999999999998 899999999999999998765433
No 135
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=93.90 E-value=0.13 Score=42.43 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=34.2
Q ss_pred cCCcccCcceeeccceEEEEEEceEEEEe--CC--EEEEccCCcEEEeCCCCceeEEeCC
Q 025000 187 QPGDFLNVKEVHYNQHGLLLLEGQGIYRL--GD--SWYPVQAGDVLWMAPFVPQWYAALG 242 (259)
Q Consensus 187 ~PG~~~~~~~~H~~eh~~~il~G~g~~~~--~g--~~~~v~~GD~i~~~~~~~H~~~n~G 242 (259)
-|.....| |-..-||-+|.++|...+.+ +| +.+++++||+.++|+++||+=.-..
T Consensus 41 GPN~R~Dy-Hine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~ 99 (151)
T PF06052_consen 41 GPNQRTDY-HINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPA 99 (151)
T ss_dssp SSB--SSE-EE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred CCCCCCcc-ccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence 45555555 44455688999999887654 44 6789999999999999999976543
No 136
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=93.34 E-value=0.22 Score=45.93 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=39.6
Q ss_pred ecCCcccCcceeeccceEEEEEEceEE--EEeC-----------------------CEEEEccCCcEEEeCCCCceeEEe
Q 025000 186 FQPGDFLNVKEVHYNQHGLLLLEGQGI--YRLG-----------------------DSWYPVQAGDVLWMAPFVPQWYAA 240 (259)
Q Consensus 186 ~~PG~~~~~~~~H~~eh~~~il~G~g~--~~~~-----------------------g~~~~v~~GD~i~~~~~~~H~~~n 240 (259)
+.|+++-+. --|...+..|||+..|. -++- -....++|||++|+|+|+.|.-.+
T Consensus 120 ~tp~g~~g~-~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~ 198 (319)
T PF08007_consen 120 LTPPGSQGF-GPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVT 198 (319)
T ss_dssp EETSSBEES-ECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEE
T ss_pred ecCCCCCCc-cCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCC
Confidence 457776666 56777788888887772 2211 236889999999999999999999
Q ss_pred CCCccEEE
Q 025000 241 LGKTRTRY 248 (259)
Q Consensus 241 ~G~e~~~f 248 (259)
.+ ..+.+
T Consensus 199 ~~-~S~hl 205 (319)
T PF08007_consen 199 TD-PSLHL 205 (319)
T ss_dssp SS--EEEE
T ss_pred CC-CceEE
Confidence 98 54444
No 137
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.05 E-value=0.11 Score=39.67 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=21.2
Q ss_pred EEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000 218 SWYPVQAGDVLWMAPFVPQWYAALGKT 244 (259)
Q Consensus 218 ~~~~v~~GD~i~~~~~~~H~~~n~G~e 244 (259)
....-+|||+|+++||..|+..|.|+.
T Consensus 81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 81 YRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccceECCCCEEEECCCceEEEEeCCce
Confidence 357789999999999999999999974
No 138
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=92.72 E-value=0.25 Score=34.75 Aligned_cols=54 Identities=19% Similarity=0.090 Sum_probs=39.4
Q ss_pred EEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC--cEEEEeCCcEEEeCCCCcEEEE
Q 025000 68 ANMQENARSALPPHDVERFIFVVQGSAMLTNASG--VSSKLMVDSYTYLPPNFAHSLR 123 (259)
Q Consensus 68 ~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~~~ 123 (259)
++|.||...........+ +-|.+|++=++. +| +.+.|.+||++.++++..-.+.
T Consensus 2 ~~L~~g~~~~lr~~~~~~-l~v~~G~vWlT~-~g~~~D~~L~~G~~l~l~~g~~vvl~ 57 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQR-LRVESGRVWLTR-EGDPDDYWLQAGDSLRLRRGGRVVLS 57 (63)
T ss_pred EEeCCCceEEeEcCCCcE-EEEccccEEEEC-CCCCCCEEECCCCEEEeCCCCEEEEE
Confidence 356677655544333333 899999999998 54 5699999999999998765443
No 139
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=92.05 E-value=1.4 Score=35.52 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=37.7
Q ss_pred EEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000 203 GLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT 244 (259)
Q Consensus 203 ~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e 244 (259)
..+.++|.+.+..+|....+.|||+++..++.+..+...++-
T Consensus 58 l~~~~~G~~~~~~~g~~~~~~pg~~~l~d~~~~~~~~~~~~~ 99 (172)
T PF14525_consen 58 LVLPLSGSARIEQGGREVELAPGDVVLLDPGQPYRLEFSAGC 99 (172)
T ss_pred EEEEccCCEEEEECCEEEEEcCCeEEEEcCCCCEEEEECCCc
Confidence 357799999999999999999999999999999999877543
No 140
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.02 E-value=0.7 Score=43.24 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=46.2
Q ss_pred CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEE
Q 025000 80 PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFE 134 (259)
Q Consensus 80 ~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~ 134 (259)
..++|+++|+-+|++.+.. +=-...+++||++.||.|+..++.- ++.++.++.+
T Consensus 143 NADge~Livpq~G~l~l~t-e~G~l~v~pgeiavIPRG~~frve~~~~~~rgy~~E 197 (427)
T COG3508 143 NADGELLIVPQQGELRLKT-ELGVLEVEPGEIAVIPRGTTFRVELKDGEARGYGCE 197 (427)
T ss_pred cCCCCEEEEeecceEEEEE-eeceEEecCCcEEEeeCCceEEEEecCCceEEEEEe
Confidence 4789999999999999987 6556799999999999999999886 6667777654
No 141
>COG1741 Pirin-related protein [General function prediction only]
Probab=91.86 E-value=0.42 Score=43.43 Aligned_cols=68 Identities=16% Similarity=0.053 Sum_probs=53.3
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEceEEEEeC-CEEEEccCCcEEEeCCC--CceeEEeC--CCccEEE
Q 025000 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG-DSWYPVQAGDVLWMAPF--VPQWYAAL--GKTRTRY 248 (259)
Q Consensus 181 ~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~-g~~~~v~~GD~i~~~~~--~~H~~~n~--G~e~~~f 248 (259)
++--.+.||.-.+.|.|-+.|-.-|+|+|+....|. |..-.++|||+-||.+| +-|+=.|. -++++..
T Consensus 46 ~~~~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~ 118 (276)
T COG1741 46 IGPDVLAPGRGFPPHPHRGLETVTYVLDGEIEHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHG 118 (276)
T ss_pred cccccccCCCcCCCCCCCCcEEEEEEEccEEEEeecCCceeeecccceeEEcCCCceeecccCCccCCCccce
Confidence 344459999988887777787778999999999998 57889999999999875 45888876 2335543
No 142
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=91.57 E-value=1.9 Score=31.95 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=38.7
Q ss_pred CCceEEEEEEECEEEEEEcC------CcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEE
Q 025000 81 HDVERFIFVVQGSAMLTNAS------GVSSKLMVDSYTYLPPNFAHSLRA-EGSATLV 131 (259)
Q Consensus 81 ~~~Eef~yVl~G~l~v~v~~------ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l 131 (259)
.+.-.-+-||+|++++..-+ .+...+.+|+..+++|...|++.- +.++++.
T Consensus 23 ~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~ 80 (82)
T PF09313_consen 23 AGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQ 80 (82)
T ss_dssp TTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEE
T ss_pred CCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEEE
Confidence 67777889999999998723 356799999999999999999997 3346654
No 143
>PRK11396 hypothetical protein; Provisional
Probab=91.37 E-value=5.4 Score=34.33 Aligned_cols=82 Identities=11% Similarity=0.112 Sum_probs=56.2
Q ss_pred eEEEEecCCCCCcEEEE--EEEecCCCcCCCC-CCCceEEEEEEEC-EEEEEEcCCc-EEEEeCCcEEEeCCCCcEEEEe
Q 025000 50 LGAYLITPAMGSHFVMY--LANMQENARSALP-PHDVERFIFVVQG-SAMLTNASGV-SSKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 50 ~~~~l~sp~~g~~f~~~--~~~l~Pg~~~~~h-~~~~Eef~yVl~G-~l~v~v~~ge-~~~L~~Gd~i~~p~~~~H~~~N 124 (259)
+-.+...|..+.+|... +.++.. ..+.. ..+.+.++.||+| .+++.. +++ .+.|++++.+.|+.+..-.-+.
T Consensus 21 TrEI~~~P~~~~dF~WRiSiA~I~~--~GpFS~FpGidR~i~lL~G~g~~L~~-~~~~~~~l~~~~p~~F~Gd~~v~a~L 97 (191)
T PRK11396 21 TREICTFPPAKRDFYWRASIASIAA--NGEFSLFPGMERIVTLLEGGEMFLES-ADRFNHTLKPLQPFAFAADQVVKAKL 97 (191)
T ss_pred EEEEEEcCCCCCCceEEEEEEEecC--CCCCCCCCCccEEEEEEECCCEEEee-CCccceecCCCCCeEeCCCCeeEEEE
Confidence 44445567654567654 333433 23322 4789999999999 689987 664 5789999999999999887776
Q ss_pred -CCeE-EEEEEE
Q 025000 125 -EGSA-TLVVFE 134 (259)
Q Consensus 125 -~~~a-~~l~v~ 134 (259)
++++ +-+-++
T Consensus 98 ~~G~v~~dfNvM 109 (191)
T PRK11396 98 TAGQMSMDFNIM 109 (191)
T ss_pred CCCCeEEEEEEE
Confidence 5653 544443
No 144
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=91.28 E-value=2 Score=39.67 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=40.9
Q ss_pred EEEEEecCCC--cCCCCCCCceEEEEEEECEEEEEEcC----------------------CcEEEEeCCcEEEeCCCCcE
Q 025000 65 MYLANMQENA--RSALPPHDVERFIFVVQGSAMLTNAS----------------------GVSSKLMVDSYTYLPPNFAH 120 (259)
Q Consensus 65 ~~~~~l~Pg~--~~~~h~~~~Eef~yVl~G~l~v~v~~----------------------ge~~~L~~Gd~i~~p~~~~H 120 (259)
..-+-+.|++ +..+|....+-|++=++|+=+-.+.. -.+++|+|||.+|+|+|..|
T Consensus 115 ~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H 194 (319)
T PF08007_consen 115 GANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWH 194 (319)
T ss_dssp EEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EE
T ss_pred ceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccC
Confidence 3344456777 44667777899999999987666511 12589999999999999999
Q ss_pred EEEeCC
Q 025000 121 SLRAEG 126 (259)
Q Consensus 121 ~~~N~~ 126 (259)
.-.+.+
T Consensus 195 ~~~~~~ 200 (319)
T PF08007_consen 195 QAVTTD 200 (319)
T ss_dssp EEEESS
T ss_pred CCCCCC
Confidence 999854
No 145
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=91.26 E-value=0.79 Score=38.83 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=42.4
Q ss_pred CCcccCcceeecc-ceEEEEEEceEEEEe-----C----CEEEEccCC----cEEEeCCCCceeEEeCCCccEEEEE
Q 025000 188 PGDFLNVKEVHYN-QHGLLLLEGQGIYRL-----G----DSWYPVQAG----DVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 188 PG~~~~~~~~H~~-eh~~~il~G~g~~~~-----~----g~~~~v~~G----D~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
||--=+.|-|+.. ..-..+++|+....+ + |+|.-+.-+ -.+|+|+|+-|+|.|.|++. +++|
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~-~~~y 129 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA-EVVY 129 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce-EEEE
Confidence 7766555545544 577888999986443 2 245444433 46999999999999999987 4433
No 146
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=91.23 E-value=0.96 Score=41.07 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=39.9
Q ss_pred eEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeC--CCccEEEEEE
Q 025000 202 HGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAAL--GKTRTRYLLY 251 (259)
Q Consensus 202 h~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~--G~e~~~fi~~ 251 (259)
=++..|.|+|.+..+|+.+++.+.|.+|++.|..-..-+. ...|++|.+.
T Consensus 76 ~giV~lgG~~~V~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 76 LGIINIGGAGTVTVDGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred EEEEEccceEEEEECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 3578899999999999999999999999999987544432 2456776554
No 147
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=90.74 E-value=1.9 Score=32.83 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=53.3
Q ss_pred ceEEEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCE--EEEccCCcEEEeCCCCceeEEe
Q 025000 163 EVFQLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS--WYPVQAGDVLWMAPFVPQWYAA 240 (259)
Q Consensus 163 ~~~~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~--~~~v~~GD~i~~~~~~~H~~~n 240 (259)
|++..+-+.-.+.+. .. +=.+.||.+ .=.-...|.+-|++|+..+.|.|+ |....+|+..-+|.+..=.++.
T Consensus 10 GkV~S~~~~~~dG~~-~T--lGVm~pGeY---~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v 83 (94)
T PF06865_consen 10 GKVKSITFEFADGSK-KT--LGVMLPGEY---TFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKV 83 (94)
T ss_dssp CTEEEEEEEETTSEE-EE--EEEE-SECE---EEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEE
T ss_pred CeEEEEEEEcCCCCc-ce--EEEEeeeEE---EEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEE
Confidence 455555555444221 11 223457774 223345588999999999999985 9999999999999998888887
Q ss_pred CCCccEEEEEE
Q 025000 241 LGKTRTRYLLY 251 (259)
Q Consensus 241 ~G~e~~~fi~~ 251 (259)
. ++..|||.
T Consensus 84 ~--~~~~Y~C~ 92 (94)
T PF06865_consen 84 K--EPTAYLCS 92 (94)
T ss_dssp S--S-EEEEEE
T ss_pred C--cceeeEEE
Confidence 6 89999985
No 148
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=90.72 E-value=0.87 Score=38.13 Aligned_cols=74 Identities=22% Similarity=0.193 Sum_probs=51.8
Q ss_pred EEee-CCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceE---EEEeCCE--------EEEccCCcEEEeCCCCc
Q 025000 168 RKLL-PQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQG---IYRLGDS--------WYPVQAGDVLWMAPFVP 235 (259)
Q Consensus 168 ~~l~-p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g---~~~~~g~--------~~~v~~GD~i~~~~~~~ 235 (259)
+.|+ -++.++ +.+-.+|+.||.-.|. |.|.+--..=||.|.= +|.+.++ ..-..+|.+- +.||.-
T Consensus 62 ~~LLh~d~~gf-ltV~~~t~~PG~~~p~-HnH~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdi 138 (191)
T COG5553 62 ELLLHADPQGF-LTVYHITLSPGVQYPP-HNHLMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDI 138 (191)
T ss_pred eEEEEEccccc-EEEEEEEeCCCcccCC-cccchheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCe
Confidence 4444 456666 7788999999999996 5665545556666642 4444443 4456778777 888999
Q ss_pred eeEEeCCCc
Q 025000 236 QWYAALGKT 244 (259)
Q Consensus 236 H~~~n~G~e 244 (259)
|++.|+|..
T Consensus 139 hsv~n~~sd 147 (191)
T COG5553 139 HSVANTGSD 147 (191)
T ss_pred eeecccCCC
Confidence 999998865
No 149
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=90.29 E-value=2.6 Score=35.55 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=45.3
Q ss_pred EEEeeCCCCCcceEEEEEEecCCcccCcceeeccceE-EEEEEceEEEE---eCCE----------EEEccCCcEEEeCC
Q 025000 167 LRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHG-LLLLEGQGIYR---LGDS----------WYPVQAGDVLWMAP 232 (259)
Q Consensus 167 ~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~-~~il~G~g~~~---~~g~----------~~~v~~GD~i~~~~ 232 (259)
.|.|+-.+.. +.+-.+...||..++. |-|...++ +.||+|+-.-. ..+. ...+..|.....++
T Consensus 65 ~r~ll~~~~~--~el~ll~W~pGq~S~I-HDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 141 (175)
T PF05995_consen 65 TRNLLYRDER--FELWLLCWPPGQRSPI-HDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDP 141 (175)
T ss_dssp EEEEEEGGCT---EEEEEEE-TT-B--E-EE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTT
T ss_pred eEEEEecCCC--eEEEEEEeCCCCcCCC-CCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCC
Confidence 4555533333 4455889999999996 67765555 67999987543 3433 23345555556677
Q ss_pred CCceeEEeCC-CccEE
Q 025000 233 FVPQWYAALG-KTRTR 247 (259)
Q Consensus 233 ~~~H~~~n~G-~e~~~ 247 (259)
+.-|.+.|.+ ++++.
T Consensus 142 ~~iH~v~n~s~~~~av 157 (175)
T PF05995_consen 142 HGIHRVENPSGDEPAV 157 (175)
T ss_dssp TBEEEEEES-SSS-EE
T ss_pred CCeEEeccCCCCCCEE
Confidence 8889999886 66654
No 150
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=90.04 E-value=0.92 Score=39.31 Aligned_cols=70 Identities=23% Similarity=0.207 Sum_probs=47.4
Q ss_pred ceEEEEEEecCCcccCcceeeccceEEE-EEEceEEEEeCCE-------------E--E-------EccCCcEEEeCCCC
Q 025000 178 DFNIHIMDFQPGDFLNVKEVHYNQHGLL-LLEGQGIYRLGDS-------------W--Y-------PVQAGDVLWMAPFV 234 (259)
Q Consensus 178 ~~~~~~~t~~PG~~~~~~~~H~~eh~~~-il~G~g~~~~~g~-------------~--~-------~v~~GD~i~~~~~~ 234 (259)
.+.|.+|-|.||+.||. |-|+..+++. ||.|+..++-=+. . . --.+++..++-|..
T Consensus 43 ~fsi~iF~lp~g~~IPL-HDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~ 121 (200)
T PF07847_consen 43 DFSIGIFCLPPGAVIPL-HDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTS 121 (200)
T ss_pred CcEEEEEEeCCCCEeCC-CCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCC
Confidence 67778999999999998 6676667764 8999887642110 0 0 12334544444443
Q ss_pred ---ceeEEeCCCccEEEE
Q 025000 235 ---PQWYAALGKTRTRYL 249 (259)
Q Consensus 235 ---~H~~~n~G~e~~~fi 249 (259)
-|+|.|.. +++-||
T Consensus 122 ggNiH~f~a~~-~p~Afl 138 (200)
T PF07847_consen 122 GGNIHEFTALT-GPCAFL 138 (200)
T ss_pred CCeeEEEEeCC-CCeEEE
Confidence 49999997 788776
No 151
>PRK10579 hypothetical protein; Provisional
Probab=89.96 E-value=2.2 Score=32.52 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=57.5
Q ss_pred ceEEEEEeeCCCCC-cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC--EEEEccCCcEEEeCCCCceeEE
Q 025000 163 EVFQLRKLLPQAVP-FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYA 239 (259)
Q Consensus 163 ~~~~~~~l~p~~~~-~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g--~~~~v~~GD~i~~~~~~~H~~~ 239 (259)
|.+..+-+.-.+.. +.. =.+.||.. .=.-...|.+=|++|+..+.|.| +|...++|+..-+|.+.+=.++
T Consensus 10 Gkv~S~~~~~~dG~~kTl----GVm~pGey---~F~T~~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~ 82 (94)
T PRK10579 10 GKVKSIGFDSSSTGRASV----GVMAEGEY---TFSTAEPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQ 82 (94)
T ss_pred CeEEEEEEEcCCCCeeEE----EEEeeeEE---EEcCCCcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEE
Confidence 45555555544432 221 12346663 12234458899999999999998 7999999999999999998888
Q ss_pred eCCCccEEEEEE
Q 025000 240 ALGKTRTRYLLY 251 (259)
Q Consensus 240 n~G~e~~~fi~~ 251 (259)
.. ++..|+|.
T Consensus 83 v~--~~t~Y~C~ 92 (94)
T PRK10579 83 VA--EPTSYLCR 92 (94)
T ss_pred EC--cceeeEEE
Confidence 76 78889885
No 152
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=89.45 E-value=0.39 Score=41.49 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=20.9
Q ss_pred EEEEccCCcEEEeCCCCceeEEeCCCcc
Q 025000 218 SWYPVQAGDVLWMAPFVPQWYAALGKTR 245 (259)
Q Consensus 218 ~~~~v~~GD~i~~~~~~~H~~~n~G~e~ 245 (259)
-...++|||++|+|+|-.|+++|..+++
T Consensus 209 ~~~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 209 YEVVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred eEEEECCCeEEEECCCCeEEEEEcCCCC
Confidence 4568999999999999999999994333
No 153
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=89.27 E-value=2.8 Score=35.59 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=42.9
Q ss_pred cCCcccCccee--eccceEEEEEEceEEEEe-C--------CEEEEc--cC--CcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 187 QPGDFLNVKEV--HYNQHGLLLLEGQGIYRL-G--------DSWYPV--QA--GDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 187 ~PG~~~~~~~~--H~~eh~~~il~G~g~~~~-~--------g~~~~v--~~--GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
.+|.-=+.|-| +.+...+.|++|+..-.+ | |+|..+ .+ +-.+|+|+|+-|||.+.+++ ..++|.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 55666565444 346778999999985432 1 344443 23 44999999999999999855 444444
No 154
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.26 E-value=1.5 Score=32.76 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=42.7
Q ss_pred EecCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcEEEEeCCcEEEeCCCCcEEEEeCCeE
Q 025000 69 NMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVSSKLMVDSYTYLPPNFAHSLRAEGSA 128 (259)
Q Consensus 69 ~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a 128 (259)
.+.||.-. ... ..-|..-|+.|.+++.+ +.+++.+-.+|+.+.+|++....++-.++.
T Consensus 29 Vm~~geyt-FgT-a~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVaeat 87 (94)
T COG3123 29 VMAPGEYT-FGT-AAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVAEAT 87 (94)
T ss_pred EEeceeEE-ecc-CCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEeeee
Confidence 45566433 111 23466789999999999 445778999999999999999988864433
No 155
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=86.86 E-value=1 Score=38.85 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.5
Q ss_pred EEEEeCCcEEEeCCCCcEEEEeC
Q 025000 103 SSKLMVDSYTYLPPNFAHSLRAE 125 (259)
Q Consensus 103 ~~~L~~Gd~i~~p~~~~H~~~N~ 125 (259)
+.+|+|||.+|||+|--|.++|.
T Consensus 210 ~~~l~pGD~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 210 EVVLEPGDVLFIPPGWWHQVENL 232 (251)
T ss_dssp EEEEETT-EEEE-TT-EEEEEES
T ss_pred EEEECCCeEEEECCCCeEEEEEc
Confidence 46899999999999999999996
No 156
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=86.74 E-value=2.7 Score=35.66 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=44.8
Q ss_pred CCCcCCCCC-CC-ceEEEEEEECEEEEEE---cCC-----c--EEEEeCC--cEEEeCCCCcEEEEe--CCeEEEEEEEE
Q 025000 72 ENARSALPP-HD-VERFIFVVQGSAMLTN---ASG-----V--SSKLMVD--SYTYLPPNFAHSLRA--EGSATLVVFER 135 (259)
Q Consensus 72 Pg~~~~~h~-~~-~Eef~yVl~G~l~v~v---~~g-----e--~~~L~~G--d~i~~p~~~~H~~~N--~~~a~~l~v~~ 135 (259)
||---+.|- +. ..+++.|+.|++-..+ ..| + ...|.+. -.+++|+|..|.+.| ++..-++++..
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~~ 133 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVTE 133 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEecc
Confidence 443335562 22 4789999999986544 112 1 2355555 789999999999999 33445556666
Q ss_pred ecccc
Q 025000 136 RYASL 140 (259)
Q Consensus 136 ~y~p~ 140 (259)
.|.|-
T Consensus 134 ~Y~p~ 138 (173)
T COG1898 134 EYDPE 138 (173)
T ss_pred eeCcc
Confidence 77763
No 157
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=86.67 E-value=2.4 Score=36.01 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=45.6
Q ss_pred cCCCcCCCCC---CCceEEEEEEECEEEEEEcC--------Cc--EEEEeC--CcEEEeCCCCcEEEEe-CCeEEEEEE-
Q 025000 71 QENARSALPP---HDVERFIFVVQGSAMLTNAS--------GV--SSKLMV--DSYTYLPPNFAHSLRA-EGSATLVVF- 133 (259)
Q Consensus 71 ~Pg~~~~~h~---~~~Eef~yVl~G~l~v~v~~--------ge--~~~L~~--Gd~i~~p~~~~H~~~N-~~~a~~l~v- 133 (259)
.+|.--+.|. +....++.|+.|++...+-| |+ ...|.+ +..+|||+|..|.|.+ ...+.++..
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~~ 131 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYKC 131 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEeC
Confidence 3443335552 45789999999998655411 12 356666 5599999999999998 444555544
Q ss_pred EEeccc
Q 025000 134 ERRYAS 139 (259)
Q Consensus 134 ~~~y~p 139 (259)
...|.|
T Consensus 132 ~~~y~p 137 (176)
T TIGR01221 132 TDYYAP 137 (176)
T ss_pred CCCcCc
Confidence 455555
No 158
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=86.18 E-value=5.5 Score=33.43 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=60.3
Q ss_pred cEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE----c------CCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEE
Q 025000 62 HFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN----A------SGVSSKLMVDSYTYLPPNFAHSLRAEGSATLV 131 (259)
Q Consensus 62 ~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v----~------~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l 131 (259)
.|.++.+++.||..++.|.|...-.+=|+.|.-+=.+ + +++...+.+|..- ..||..|++.|..+.|-
T Consensus 72 fltV~~~t~~PG~~~p~HnH~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs- 149 (191)
T COG5553 72 FLTVYHITLSPGVQYPPHNHLMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRS- 149 (191)
T ss_pred cEEEEEEEeCCCcccCCcccchheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCcc-
Confidence 4999999999999999998877777777777543222 1 3455577888877 77799999999776655
Q ss_pred EEEEeccc-cCCCCcceeec
Q 025000 132 VFERRYAS-LENHITEQIVG 150 (259)
Q Consensus 132 ~v~~~y~p-~~g~~p~~~v~ 150 (259)
...+.|.+ +.+ .+..+++
T Consensus 150 ~aiHvy~a~ig~-~~r~~fs 168 (191)
T COG5553 150 GAIHVYLADIGG-TDRQLFS 168 (191)
T ss_pred ceEEEEecccCC-Ccceeee
Confidence 34455665 343 3555554
No 159
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=86.06 E-value=2.8 Score=32.61 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=39.7
Q ss_pred cCCCC-CCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCC--CCcEEEEe--C-CeEEEE
Q 025000 75 RSALP-PHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPP--NFAHSLRA--E-GSATLV 131 (259)
Q Consensus 75 ~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~--~~~H~~~N--~-~~a~~l 131 (259)
..+.| +.+.|.+-||++|+++-.-.-|...+|++||.-+.-| |+.|.=+| + ++++++
T Consensus 41 gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 41 GFPMHPHRGFEIVTYVLEGELRHRDSLGNRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp EEEEEEECSEEEEEEEEESEEEEEETTSEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCcCCCCceEEEEEecCEEEEECCCCCeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 34555 5678888899999998764235667899999999887 45676667 2 355554
No 160
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=85.98 E-value=0.59 Score=39.82 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=35.1
Q ss_pred CCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000 81 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE 134 (259)
Q Consensus 81 ~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~ 134 (259)
....-++|+++|++++.. +++.+.|.+||.+.+.. ++...-.+..+++|+.
T Consensus 133 ~~~~~l~~~~~G~~~i~~-~~~~~~L~~~d~l~~~~--~~~~~l~~~g~ll~v~ 183 (184)
T PF05962_consen 133 AASTVLVYVLEGAWSITE-GGNCISLSAGDLLLIDD--EEDLPLTGDGQLLWVS 183 (184)
T ss_dssp --SEEEEEESSS-EEECC-CEEEEEE-TT-EEEEES--EECEEEEEECCEEEEE
T ss_pred CCCEEEEEEeeCcEEEec-CCCceEcCCCCEEEEeC--CCceEecCCeeEEEEe
Confidence 456778999999988886 77899999999999987 3333224566777764
No 161
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=85.60 E-value=1.6 Score=41.10 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=37.8
Q ss_pred EecCCCcCCCCCCCceEEEEEEECEEEEEEcCC----------------------cEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000 69 NMQENARSALPPHDVERFIFVVQGSAMLTNASG----------------------VSSKLMVDSYTYLPPNFAHSLRAEG 126 (259)
Q Consensus 69 ~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g----------------------e~~~L~~Gd~i~~p~~~~H~~~N~~ 126 (259)
-.++||+-+.|-...+-|++=..|+=+=.+ +. ...+|.|||.+|+|++.+|.=....
T Consensus 125 ~a~~GGgvg~H~D~YDVfliQg~G~RRW~v-~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~ 203 (383)
T COG2850 125 FAAPGGGVGPHFDQYDVFLIQGQGRRRWRV-GKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAED 203 (383)
T ss_pred EecCCCccCccccchheeEEeecccceeec-CCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccc
Confidence 344666666666666666555555444333 11 2357999999999999999866543
Q ss_pred eE
Q 025000 127 SA 128 (259)
Q Consensus 127 ~a 128 (259)
+|
T Consensus 204 dc 205 (383)
T COG2850 204 DC 205 (383)
T ss_pred cc
Confidence 33
No 162
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=84.83 E-value=7 Score=33.10 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=37.1
Q ss_pred cCCcccCcceeec---cceEEEEEEceEEEEe-C--------CEEEEc--cCCc--EEEeCCCCceeEEeCCCc
Q 025000 187 QPGDFLNVKEVHY---NQHGLLLLEGQGIYRL-G--------DSWYPV--QAGD--VLWMAPFVPQWYAALGKT 244 (259)
Q Consensus 187 ~PG~~~~~~~~H~---~eh~~~il~G~g~~~~-~--------g~~~~v--~~GD--~i~~~~~~~H~~~n~G~e 244 (259)
.+|.-=+.|-+.. +...+.|++|+....+ | |+|..+ .+++ .+|+|+|+-|||.+.+++
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~ 124 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD 124 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc
Confidence 3466655533322 2355789999874332 2 666655 4454 799999999999999775
No 163
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=83.45 E-value=2.7 Score=38.41 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=37.5
Q ss_pred ceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000 83 VERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 83 ~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N 124 (259)
.--+++|.+|++++.-.+|++..+.+++.+++|.+..|.+.|
T Consensus 38 ~~~li~v~~G~~~i~~~~g~~l~i~~p~~~~~p~~~~~~~~~ 79 (291)
T PRK15186 38 QSVLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITM 79 (291)
T ss_pred ceEEEEeccceEEEEeCCCceEEeCCCeEEEEeCCcEEEEEe
Confidence 456899999999998745677899999999999999999998
No 164
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=83.44 E-value=8.1 Score=31.67 Aligned_cols=43 Identities=12% Similarity=0.029 Sum_probs=38.3
Q ss_pred CCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000 81 HDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 81 ~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N 124 (259)
-...-+++|++|+=++.+ |++.+.-.+|+++..+.+.|-..+-
T Consensus 21 ~y~p~i~~vlQG~K~~~~-g~~~~~Y~~g~~lv~~~~lPv~~~v 63 (155)
T PF06719_consen 21 VYEPSICIVLQGSKRVHL-GDQVFEYDAGQYLVSSVDLPVESEV 63 (155)
T ss_pred ecCCeEEEEEeeeEEEEE-CCceEEecCCcEEEecCCCcEEEEE
Confidence 344668999999999999 9999999999999999999988764
No 165
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=83.30 E-value=5.1 Score=34.69 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=55.0
Q ss_pred CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe--CCeEEEEEE
Q 025000 61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA--EGSATLVVF 133 (259)
Q Consensus 61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v 133 (259)
.+-.+.+..+.||.+.+.|.|.+-|.+.|++|...=.. | .+.+||+..-+.++.|+-+- +++|-.|..
T Consensus 126 ds~~V~llki~~g~s~P~HtH~G~E~t~vl~G~~sde~--G---~y~vgD~~~~d~~v~H~piv~~~~eClcl~a 195 (216)
T COG3806 126 DSRRVALLKIEPGRSFPDHTHVGIERTAVLEGAFSDEN--G---EYLVGDFTLADGTVQHSPIVLPPGECLCLAA 195 (216)
T ss_pred CCceeEEEEeccCcccccccccceEEEEEEeeccccCC--C---ccccCceeecCCccccccccCCCCCceEEEE
Confidence 35667788899999999999999999999999877554 2 68999999999999998553 556655553
No 166
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=82.46 E-value=5.5 Score=33.74 Aligned_cols=58 Identities=21% Similarity=0.433 Sum_probs=37.2
Q ss_pred CceEEEEEEECEEEEEEcC--------Cc--EEEEeCCc--EEEeCCCCcEEEEe-CCeEEEEE-EEEeccc
Q 025000 82 DVERFIFVVQGSAMLTNAS--------GV--SSKLMVDS--YTYLPPNFAHSLRA-EGSATLVV-FERRYAS 139 (259)
Q Consensus 82 ~~Eef~yVl~G~l~v~v~~--------ge--~~~L~~Gd--~i~~p~~~~H~~~N-~~~a~~l~-v~~~y~p 139 (259)
....++.|++|++...+-| |+ ...|.++. .+|||+|..|.|.+ +..+.++. +...|.|
T Consensus 66 ~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y~~t~~y~p 137 (176)
T PF00908_consen 66 AQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLYKVTNYYDP 137 (176)
T ss_dssp -EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEEEESS---G
T ss_pred CCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEEecCCccCc
Confidence 4578999999998554412 33 35777776 69999999999999 44444444 4445555
No 167
>PHA00672 hypothetical protein
Probab=81.82 E-value=8.4 Score=31.02 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=56.3
Q ss_pred eEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 179 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 179 ~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
.--|.++++.|.-+- --.|-.++. +|++|...+..||+...+..=-+|--++|..+.+++--|+.+.-|-
T Consensus 47 vYARei~IPkGt~Lt-G~~hkf~~~-ii~sG~itV~tdge~~rl~g~~~i~~~aG~KragyAHeDT~wt~~h 116 (152)
T PHA00672 47 VYARTIRIPAGVALT-GALIKVSTV-LIFSGHATVFIGGEAVELRGYHVIPASAGRKQAFVAHADTDLTMLF 116 (152)
T ss_pred eeEEEEeccCceeee-eeeeEeeEE-EEecccEEEEeCCcEEEEecceeeecCCCcccceeeeccceEEEEe
Confidence 344677777776653 356767666 9999999999999999999999999999999999998777766543
No 168
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=81.49 E-value=14 Score=32.97 Aligned_cols=87 Identities=10% Similarity=0.145 Sum_probs=64.9
Q ss_pred EEEEeeCCCCCcc-eEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEE----------EccCCcEEEeCCCC
Q 025000 166 QLRKLLPQAVPFD-FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWY----------PVQAGDVLWMAPFV 234 (259)
Q Consensus 166 ~~~~l~p~~~~~~-~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~----------~v~~GD~i~~~~~~ 234 (259)
.++.+.|++.++. --|++..|++|.+.-. ..-..|-++.+++|+..+...|+.. +=+|=|.+|++.|.
T Consensus 15 ~v~~vtp~sagw~YVGF~~~~L~~Ges~~~-~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~ 93 (270)
T COG3718 15 LVQDVTPESAGWEYVGFRLLRLAAGESATE-ETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGS 93 (270)
T ss_pred ceEEecCCCCCceeEEEEEEEccCCCcccc-cCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCc
Confidence 4556778877764 6899999999999864 6666777788899999999887432 23466999999999
Q ss_pred ceeEEeCCCccEEEEEEeec
Q 025000 235 PQWYAALGKTRTRYLLYKDV 254 (259)
Q Consensus 235 ~H~~~n~G~e~~~fi~~k~~ 254 (259)
.=++.++++-. +=+|+-..
T Consensus 94 ~~~vtA~t~~~-vAvC~AP~ 112 (270)
T COG3718 94 AFSVTATTDLE-VAVCSAPG 112 (270)
T ss_pred eEEEEeecceE-EEEEeCCC
Confidence 88888887642 23454443
No 169
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=80.87 E-value=9.5 Score=28.25 Aligned_cols=47 Identities=21% Similarity=0.131 Sum_probs=36.1
Q ss_pred eEEEEEEceEEEEeCC-------EEEEccCCcEEEeCCCCceeEEeCCCccEEEE
Q 025000 202 HGLLLLEGQGIYRLGD-------SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYL 249 (259)
Q Consensus 202 h~~~il~G~g~~~~~g-------~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi 249 (259)
--+-||+|+..|+.-+ +..-+.+|+..+++|...|-++..++ |++|-
T Consensus 27 g~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~-D~~f~ 80 (82)
T PF09313_consen 27 GKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD-DLRFQ 80 (82)
T ss_dssp EEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST-T-EEE
T ss_pred EEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC-CEEEE
Confidence 4578999999887543 67889999999999999999999974 45554
No 170
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=80.68 E-value=4.7 Score=30.45 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEeCCcEEEeCCCCcEEEEeCCe
Q 025000 103 SSKLMVDSYTYLPPNFAHSLRAEGS 127 (259)
Q Consensus 103 ~~~L~~Gd~i~~p~~~~H~~~N~~~ 127 (259)
..+-++||++++|||..|...|.+.
T Consensus 82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp EEEEETT-EEEE-TT-EEEEEESSS
T ss_pred cceECCCCEEEECCCceEEEEeCCc
Confidence 4689999999999999999999553
No 171
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=80.26 E-value=6 Score=37.39 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=53.5
Q ss_pred EEEeCCcEEEeCCCCcEEEEeCCeEEEE-----EEEEeccccCCCCcceeec----cCCCC---CCcc-----cCC-ceE
Q 025000 104 SKLMVDSYTYLPPNFAHSLRAEGSATLV-----VFERRYASLENHITEQIVG----STDKQ---PLLE-----TPG-EVF 165 (259)
Q Consensus 104 ~~L~~Gd~i~~p~~~~H~~~N~~~a~~l-----~v~~~y~p~~g~~p~~~v~----~~~di---~~~~-----~~g-~~~ 165 (259)
..|++|+.+|+|||.+|.|-.-.-+++. +++ .|..|..+-- ++-+. +..+ ... ..
T Consensus 252 v~L~pGeaifl~a~~~HAYl~G~~vE~MA~SDNVlR------aGLTpK~iDv~~L~~~l~y~~~~~~~~~~~~~~~~~~- 324 (373)
T PF01238_consen 252 VELQPGEAIFLPAGEPHAYLSGDCVECMANSDNVLR------AGLTPKHIDVPELLEMLTYKPKPPEPAILPPDAPYDS- 324 (373)
T ss_dssp EEE-TT-EEEEHTTHHEEEEEEEEEEEEESSEEEEE------CCSCSSEEEHHHHHHC-EEEEEEGGGCCE--ECCEEE-
T ss_pred EEecCCceEEecCCCccccccccceeccccccceec------cCCccceeEHhHheeeeEeeccCCcceeecCccccCC-
Confidence 5899999999999999999852222222 111 2333332200 00010 1111 110 00
Q ss_pred EEEEeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC
Q 025000 166 QLRKLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD 217 (259)
Q Consensus 166 ~~~~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g 217 (259)
......| .-.+|.+..++++.|.+.- ....-..++++++|++.+..++
T Consensus 325 ~~~~y~p--p~~eF~l~~~~l~~g~~~~--~~~~~~~Illv~~G~~~i~~~~ 372 (373)
T PF01238_consen 325 GSVLYGP--PVDEFALSRIDLKKGESFI--LPLDGPSILLVTEGSATIIVSH 372 (373)
T ss_dssp CEEEEEE--SSSSEEEEEEECCTTEEEE--E-TTS-EEEEEEEEEEEEEETT
T ss_pred ceEEECC--CCCeEEEEEEEECCCCeEE--CCCCCceEEEEeCCEEEEEeCC
Confidence 0111223 2357888889998776532 2224458899999999998875
No 172
>PHA00672 hypothetical protein
Probab=79.98 E-value=13 Score=30.06 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=52.0
Q ss_pred CcEEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000 61 SHFVMYLANMQENARSALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAEG 126 (259)
Q Consensus 61 ~~f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~~ 126 (259)
+++-...++++.|.....-.|..+.| .+++|+++|.. ||+...|..=-.+--|+|....+...+
T Consensus 45 ~GvYARei~IPkGt~LtG~~hkf~~~-ii~sG~itV~t-dge~~rl~g~~~i~~~aG~KragyAHe 108 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALIKVSTV-LIFSGHATVFI-GGEAVELRGYHVIPASAGRKQAFVAHA 108 (152)
T ss_pred cceeEEEEeccCceeeeeeeeEeeEE-EEecccEEEEe-CCcEEEEecceeeecCCCcccceeeec
Confidence 45666788888876544335778888 99999999999 999999999999999999998877633
No 173
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=78.26 E-value=11 Score=36.45 Aligned_cols=75 Identities=9% Similarity=0.003 Sum_probs=48.3
Q ss_pred cceEEEEEEecCCccc--CcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000 177 FDFNIHIMDFQPGDFL--NVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV 254 (259)
Q Consensus 177 ~~~~~~~~t~~PG~~~--~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~ 254 (259)
.++++++.. ...++ ..--...-++.+++-+|.+.+.-.=-+.+|++||++.||.|+.+.+.-. ++++.++.-..
T Consensus 123 ~g~ai~~y~--~~~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~E~~ 198 (424)
T PF04209_consen 123 NGVAIHVYA--ANASMDDRAFRNADGDELIFPQQGSLRLETEFGRLDVRPGDYVVIPRGTRFRVELP--GPARGYIIENF 198 (424)
T ss_dssp EEEEEEEEE--E-S---SEEEEESSEEEEEEEEES-EEEEETTEEEEE-TTEEEEE-TT--EEEE-S--SSEEEEEEEEE
T ss_pred CCcEEEEEE--cCCCCCCcceEcCCCCEEEEEEECCEEEEecCeeEEEcCCeEEEECCeeEEEEEeC--CCceEEEEEcC
Confidence 355555554 33443 1122334457789999999999999999999999999999999999877 67777766544
Q ss_pred C
Q 025000 255 N 255 (259)
Q Consensus 255 n 255 (259)
+
T Consensus 199 ~ 199 (424)
T PF04209_consen 199 G 199 (424)
T ss_dssp S
T ss_pred C
Confidence 3
No 174
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=77.52 E-value=15 Score=31.85 Aligned_cols=71 Identities=11% Similarity=-0.025 Sum_probs=46.3
Q ss_pred cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe---CCEEE---EccCCcEEEeCCCCceeEEeCCCccEEE
Q 025000 177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GDSWY---PVQAGDVLWMAPFVPQWYAALGKTRTRY 248 (259)
Q Consensus 177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~---~g~~~---~v~~GD~i~~~~~~~H~~~n~G~e~~~f 248 (259)
.....+..++++|..+-. +...-.+.|+|++|...+.. +|+.. -+.+||++=..++.++.+...=.++++.
T Consensus 34 ~~~~~~~~~~~kge~l~~-~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v 110 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYG-EGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTV 110 (230)
T ss_pred ccceeeeEEECCCCEEEC-CCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEE
Confidence 456678889999998853 55566688999999997654 56543 3479998766555444333333344433
No 175
>PHA02984 hypothetical protein; Provisional
Probab=76.12 E-value=12 Score=33.92 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=41.4
Q ss_pred EEEEEEECEEEEEE-cCC--cEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEEEEE
Q 025000 85 RFIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRA-EGSATLVVFER 135 (259)
Q Consensus 85 ef~yVl~G~l~v~v-~~g--e~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~v~~ 135 (259)
-|+.+|+|++++.+ .++ .+..+++|+.+.+.-+..|+... +...+++++..
T Consensus 95 ~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi~y 149 (286)
T PHA02984 95 MFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVITY 149 (286)
T ss_pred EEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCCceEEEEEEE
Confidence 45677899999988 223 35799999999999999999885 77889888853
No 176
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=75.32 E-value=20 Score=31.59 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=38.1
Q ss_pred cceEEEEEEecCCcccCcceeeccceEEEEE--------------------EceEEEEeCCEEEEccCCcEEEeCCC---
Q 025000 177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLL--------------------EGQGIYRLGDSWYPVQAGDVLWMAPF--- 233 (259)
Q Consensus 177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il--------------------~G~g~~~~~g~~~~v~~GD~i~~~~~--- 233 (259)
+.++=-++.+.+|...|+|-|-.-.|-+... +....+..||.++.+.||..|-..||
T Consensus 85 k~YAEKim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESi 164 (225)
T PF07385_consen 85 KPYAEKIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESI 164 (225)
T ss_dssp --EEEEEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EE
T ss_pred CcchhhheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeE
Confidence 4677778889999999985444433433222 23346677887777766666655555
Q ss_pred -----CceeEEeCCCc
Q 025000 234 -----VPQWYAALGKT 244 (259)
Q Consensus 234 -----~~H~~~n~G~e 244 (259)
..|+|..-+..
T Consensus 165 TL~Pg~yH~Fw~e~g~ 180 (225)
T PF07385_consen 165 TLPPGIYHWFWGEGGD 180 (225)
T ss_dssp EE-TTEEEEEEE-TTS
T ss_pred eeCCCCeeeEEecCCC
Confidence 45999987655
No 177
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=74.45 E-value=25 Score=29.43 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=42.8
Q ss_pred EEEecCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE---EEEeCCcEEEe----CCCCcE--EEEeCCeEEEEEEE
Q 025000 67 LANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTYL----PPNFAH--SLRAEGSATLVVFE 134 (259)
Q Consensus 67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v--~~ge~---~~L~~Gd~i~~----p~~~~H--~~~N~~~a~~l~v~ 134 (259)
..++++|...-........+++|++|.+++.. .+|+. ..+.+||++=. ....++ ..+..++++++.+.
T Consensus 22 ~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i~ 100 (211)
T PRK11753 22 IHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEIS 100 (211)
T ss_pred EEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEEc
Confidence 45666775443223445789999999999875 23443 36899999733 323333 34446778888874
No 178
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=74.41 E-value=7.7 Score=27.25 Aligned_cols=54 Identities=7% Similarity=0.031 Sum_probs=35.6
Q ss_pred CCceEEEEEEECEEEEEE--cCCcE---EEEeCCcEEEeCC-----CCcEEEEeCCeEEEEEEE
Q 025000 81 HDVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTYLPP-----NFAHSLRAEGSATLVVFE 134 (259)
Q Consensus 81 ~~~Eef~yVl~G~l~v~v--~~ge~---~~L~~Gd~i~~p~-----~~~H~~~N~~~a~~l~v~ 134 (259)
.....+++|++|.+.+.. .+++. ..+.+||++-..+ ...+.++..++++++.+.
T Consensus 15 ~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~ 78 (91)
T PF00027_consen 15 DPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIP 78 (91)
T ss_dssp SBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEE
T ss_pred CcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEe
Confidence 447899999999999887 23442 4788888765433 233344446667776663
No 179
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=72.53 E-value=44 Score=27.35 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=19.1
Q ss_pred EEEEeCCcEEEeCCCCcEEEEeCCeEEEEEE
Q 025000 103 SSKLMVDSYTYLPPNFAHSLRAEGSATLVVF 133 (259)
Q Consensus 103 ~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v 133 (259)
...|.+|+++.|-|+..|+.......|-+++
T Consensus 107 ~v~l~~G~F~iffP~daH~P~~~~~ikK~Vv 137 (149)
T PRK10202 107 TVEVHEGQIVICDIHEAYRFICNNAVKKVVL 137 (149)
T ss_pred EEEeCCCeEEEECCcccccCCCCCcEEEEEE
Confidence 4567777777777777777653333444444
No 180
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=72.52 E-value=38 Score=29.88 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=27.1
Q ss_pred EEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEeC
Q 025000 85 RFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRAE 125 (259)
Q Consensus 85 ef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N~ 125 (259)
.+-+..+|.....- .|....|.||+|+-++|+.-|+|...
T Consensus 138 ~v~V~~DG~~~t~~-aG~~l~L~PGESiTL~Pg~yH~Fw~e 177 (225)
T PF07385_consen 138 DVTVPVDGIRRTVP-AGTQLRLNPGESITLPPGIYHWFWGE 177 (225)
T ss_dssp -EEEEETTEEEEE--TT-EEEE-TT-EEEE-TTEEEEEEE-
T ss_pred CeEEecCCcEEEec-CCceEEeCCCCeEeeCCCCeeeEEec
Confidence 44556677666554 68888999999999999999999973
No 181
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.94 E-value=15 Score=27.43 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=42.7
Q ss_pred ccceEEEEEEceEEEEeCC--EEEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 199 YNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 199 ~~eh~~~il~G~g~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
...|++-|++|...+.+.| +|..-.+|....+|.+-.-.++-. |+..|||
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVa--eat~YlC 91 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVA--EATSYLC 91 (94)
T ss_pred CCceEEEEEeeEEEEEcCCCcccEEecCCceEEcCCCCeEEEEEe--eeeehhe
Confidence 4458899999999999987 899999999999999988777754 6777776
No 182
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=71.42 E-value=29 Score=29.95 Aligned_cols=72 Identities=11% Similarity=0.015 Sum_probs=47.0
Q ss_pred EEEEEEEecCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcEE---EEeCCcEEEeCCCCcEEEEe--CCeEEEEEEE
Q 025000 63 FVMYLANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVSS---KLMVDSYTYLPPNFAHSLRA--EGSATLVVFE 134 (259)
Q Consensus 63 f~~~~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v--~~ge~~---~L~~Gd~i~~p~~~~H~~~N--~~~a~~l~v~ 134 (259)
.......+++|...-........+++|++|.+.+.. .+|+.. .+.+||++=+..+.++.+.. .+++.++.+.
T Consensus 36 ~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~i~ 114 (230)
T PRK09391 36 LVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRLIK 114 (230)
T ss_pred ceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEEEE
Confidence 444566777775543333456789999999998875 245542 45899988776666554443 5667777663
No 183
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=70.71 E-value=8.6 Score=26.99 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=33.2
Q ss_pred EecCCcccCcceeeccceEEEEEEceEEEEeC---CE---EEEccCCcEEEeC
Q 025000 185 DFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---DS---WYPVQAGDVLWMA 231 (259)
Q Consensus 185 t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~---g~---~~~v~~GD~i~~~ 231 (259)
++++|..+= .+.....+.|+|++|...+... ++ ...+.+||++-..
T Consensus 3 ~~~~g~~i~-~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~ 54 (91)
T PF00027_consen 3 TYKKGEVIY-RQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEI 54 (91)
T ss_dssp EESTTEEEE-ETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGH
T ss_pred EECCCCEEE-eCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccce
Confidence 577888774 3555567999999999987654 33 4578899986543
No 184
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=70.03 E-value=12 Score=27.04 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=36.7
Q ss_pred EEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC------EEEEccCCcEEEe
Q 025000 180 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD------SWYPVQAGDVLWM 230 (259)
Q Consensus 180 ~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g------~~~~v~~GD~i~~ 230 (259)
.+...++++|..+= .+....++.|+|++|...+...+ ....+.+||++-.
T Consensus 16 ~~~~~~~~~g~~l~-~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 16 ALEERRFPAGEVII-RQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred hceeeeeCCCCEEE-cCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 36778899999873 34555678999999999886654 2556778888644
No 185
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=69.67 E-value=3.1 Score=32.65 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=33.6
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEce---EEEEeCC-EEEEccCCcEEEeCCCCc
Q 025000 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ---GIYRLGD-SWYPVQAGDVLWMAPFVP 235 (259)
Q Consensus 181 ~~~~t~~PG~~~~~~~~H~~eh~~~il~G~---g~~~~~g-~~~~v~~GD~i~~~~~~~ 235 (259)
+.+..+.-|..+ + -|++.|+ |.+.+|| --+.+++||.|.+.+|..
T Consensus 43 V~I~Nv~NG~Rf---------~-TYvI~g~~gSg~I~lNGAAAr~~~~GD~vII~sy~~ 91 (111)
T cd06919 43 VLVVNVNNGARF---------E-TYVIPGERGSGVICLNGAAARLGQPGDRVIIMAYAL 91 (111)
T ss_pred EEEEECCCCcEE---------E-EEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECcc
Confidence 455655556543 1 3677666 9999999 468899999999998864
No 186
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=69.53 E-value=3 Score=33.36 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=33.9
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEce---EEEEeCC-EEEEccCCcEEEeCCCCc
Q 025000 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ---GIYRLGD-SWYPVQAGDVLWMAPFVP 235 (259)
Q Consensus 181 ~~~~t~~PG~~~~~~~~H~~eh~~~il~G~---g~~~~~g-~~~~v~~GD~i~~~~~~~ 235 (259)
+.+..+.-|..+ + -|++.|+ |++.+|| --+.+++||.|.+.+|+.
T Consensus 44 V~V~Nv~NG~Rf---------~-TYvI~G~~GSg~I~lNGAAArl~~~GD~VII~sy~~ 92 (126)
T TIGR00223 44 VDIVNVNNGKRF---------S-TYAIAGKRGSRIICVNGAAARCVSVGDIVIIASYVT 92 (126)
T ss_pred EEEEECCCCcEE---------E-EEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECCc
Confidence 556665566553 2 3677666 9999999 468899999999999875
No 187
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=69.49 E-value=24 Score=29.48 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=36.5
Q ss_pred EEEEEEecCCcccCcceeeccceEEEEEEceEEEEe---CCEE---EEccCCcEEEe
Q 025000 180 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GDSW---YPVQAGDVLWM 230 (259)
Q Consensus 180 ~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~---~g~~---~~v~~GD~i~~ 230 (259)
.+...++++|..+- .+-....+.|+|++|...+.. +|+. ..+.+||++-.
T Consensus 19 ~~~~~~~~kg~~l~-~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 19 HCHIHKYPAKSTLI-HAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred hCeEEEeCCCCEEE-eCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 45688999999884 355556688999999997663 4543 35799999744
No 188
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=68.65 E-value=30 Score=24.73 Aligned_cols=67 Identities=15% Similarity=0.037 Sum_probs=39.4
Q ss_pred EEEecCCCcCCCCCCCceEEEEEEECEEEEEEcCC---c---EEEEeCCcEEEeCC---CCcEE--EEeCCeEEEEEEE
Q 025000 67 LANMQENARSALPPHDVERFIFVVQGSAMLTNASG---V---SSKLMVDSYTYLPP---NFAHS--LRAEGSATLVVFE 134 (259)
Q Consensus 67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g---e---~~~L~~Gd~i~~p~---~~~H~--~~N~~~a~~l~v~ 134 (259)
..++++|...-......+.+++|++|.+.+.. .+ + ...+.+|+++=..+ +.++. .+..++++++.+.
T Consensus 19 ~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~-~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~ 96 (115)
T cd00038 19 ERRFPAGEVIIRQGDPADSLYIVLSGSVEVYK-LDEDGREQIVGFLGPGDLFGELALLGNGPRSATVRALTDSELLVLP 96 (115)
T ss_pred eeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEE-ECCCCcEEEEEecCCccCcChHHHhcCCCCCceEEEcCceEEEEEe
Confidence 34556665432223446889999999999977 33 2 24667888765432 22322 2335566766663
No 189
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=67.98 E-value=28 Score=30.55 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=47.5
Q ss_pred CCCceEEEEEEECEEEEEEcCCc--EEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEEEecc
Q 025000 80 PHDVERFIFVVQGSAMLTNASGV--SSKLMVDSYTYLPPNFAHSLRAEGSATLVVFERRYA 138 (259)
Q Consensus 80 ~~~~Eef~yVl~G~l~v~v~~ge--~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~~~y~ 138 (259)
.|-.+..+.||+|+..... +|+ ..+.+|||..+.+.|...+++=+..+-+|-+.+=..
T Consensus 116 rh~ad~y~tIL~G~~~~~~-~g~~~~evy~pGd~~~l~rg~a~~y~m~~~tw~LEY~RG~I 175 (216)
T PF04622_consen 116 RHWADDYFTILSGEQWAWS-PGSLEPEVYKPGDSHHLPRGEAKQYQMPPGTWALEYGRGWI 175 (216)
T ss_pred ceEeeeEEEEEEEEEEEEc-CCCCCceEeccCCEEEecCceEEEEEeCCCeEEEEecCCch
Confidence 3667889999999999988 664 468999999999999999999777777777744333
No 190
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=67.51 E-value=19 Score=27.24 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=35.8
Q ss_pred eEEEEEEceEEEEeCCEEEE--ccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000 202 HGLLLLEGQGIYRLGDSWYP--VQAGDVLWMAPFVPQWYAALGKTRTRYLLYK 252 (259)
Q Consensus 202 h~~~il~G~g~~~~~g~~~~--v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k 252 (259)
++..+==|.|.+..+|+..+ |++||.++.+.+..-.++. +++. |++++
T Consensus 37 ~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~-~~~~--y~iv~ 86 (95)
T PRK00364 37 EGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKI-DGEE--YLILR 86 (95)
T ss_pred eEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEE-CCEE--EEEEE
Confidence 55566678888888885555 9999999999998888876 3444 55444
No 191
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=66.92 E-value=10 Score=32.71 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=44.2
Q ss_pred cceEEEEEEecCCcccCcceeec--cceE------EEE---------------------EEceEEEEeCCEEEEccCCcE
Q 025000 177 FDFNIHIMDFQPGDFLNVKEVHY--NQHG------LLL---------------------LEGQGIYRLGDSWYPVQAGDV 227 (259)
Q Consensus 177 ~~~~~~~~t~~PG~~~~~~~~H~--~eh~------~~i---------------------l~G~g~~~~~g~~~~v~~GD~ 227 (259)
++++=.++.+.||...|+| .|. .|.+ -+| ++|.-.-.--|....++||.-
T Consensus 84 ~~yaeKiM~vr~gQvtPmH-rH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGes 162 (225)
T COG3822 84 KCYAEKIMHVRPGQVTPMH-RHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGES 162 (225)
T ss_pred ccchheeEEeccCCcCccc-ccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCc
Confidence 5667788888899999984 454 2222 122 222222222345667889999
Q ss_pred EEeCCCCceeEEeCCCc
Q 025000 228 LWMAPFVPQWYAALGKT 244 (259)
Q Consensus 228 i~~~~~~~H~~~n~G~e 244 (259)
|-++||..|||.+-+..
T Consensus 163 itL~Pg~~HsFwae~g~ 179 (225)
T COG3822 163 ITLPPGLYHSFWAEEGG 179 (225)
T ss_pred EecCCCceeeeeecCCc
Confidence 99999999999987654
No 192
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=66.92 E-value=3.7 Score=32.89 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=34.0
Q ss_pred EEEEEEecCCcccCcceeeccceEEEEEEce---EEEEeCC-EEEEccCCcEEEeCCCCc
Q 025000 180 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ---GIYRLGD-SWYPVQAGDVLWMAPFVP 235 (259)
Q Consensus 180 ~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~---g~~~~~g-~~~~v~~GD~i~~~~~~~ 235 (259)
.+.+..+.-|..+ + -|++.|+ |++.+|| --+.+++||.|.+.+|+.
T Consensus 43 ~V~V~Nv~NG~Rf---------~-TYvI~g~~GSg~I~lNGAAAr~~~~GD~vII~ay~~ 92 (126)
T PRK05449 43 KVQIVNVNNGARF---------E-TYVIAGERGSGVICLNGAAARLVQVGDLVIIAAYAQ 92 (126)
T ss_pred EEEEEECCCCcEE---------E-EEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEECcc
Confidence 3555655556543 2 3666665 9999999 468899999999999875
No 193
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=66.56 E-value=36 Score=27.80 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=43.6
Q ss_pred eeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCcee---EEeCCCccEEEEEE
Q 025000 197 VHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW---YAALGKTRTRYLLY 251 (259)
Q Consensus 197 ~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~---~~n~G~e~~~fi~~ 251 (259)
.-++.=..+|++|+=++.+|++.+.-.+|+++.++.+.|=. ..++-++|+.=+..
T Consensus 20 ~~y~p~i~~vlQG~K~~~~g~~~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 20 CVYEPSICIVLQGSKRVHLGDQVFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred eecCCeEEEEEeeeEEEEECCceEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 34455668999999999999999999999999999999933 35566677665543
No 194
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=65.73 E-value=9.8 Score=28.59 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=38.6
Q ss_pred eEEEEEEceEEEEeCCEE--EEccCCcEEEeCCCCceeEEeCCCccEEEEEEeec
Q 025000 202 HGLLLLEGQGIYRLGDSW--YPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKDV 254 (259)
Q Consensus 202 h~~~il~G~g~~~~~g~~--~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~~ 254 (259)
++..|==|.|.+.-+|+. ..|++||.+..+++....++. .++.+.++=++|+
T Consensus 36 ~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~-~~~~~~~~~~~dI 89 (93)
T PF00166_consen 36 QGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKF-DGEKYLIVREDDI 89 (93)
T ss_dssp EEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEE-TTEEEEEEEGGGE
T ss_pred eeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEE-CCEEEEEEEHHHe
Confidence 566677799999988884 478999999999999998887 3566666555553
No 195
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=64.98 E-value=28 Score=30.14 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=30.9
Q ss_pred CcEEEEEEEecCCCcCCCCCC-CceEEEEEEECEEEEEE
Q 025000 61 SHFVMYLANMQENARSALPPH-DVERFIFVVQGSAMLTN 98 (259)
Q Consensus 61 ~~f~~~~~~l~Pg~~~~~h~~-~~Eef~yVl~G~l~v~v 98 (259)
..|.+.++-|+||+..+.|-| +..-+.=||.|++.++.
T Consensus 42 ~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~S 80 (200)
T PF07847_consen 42 EDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKS 80 (200)
T ss_pred CCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEE
Confidence 489999999999999999955 45555569999998865
No 196
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=64.85 E-value=2.5 Score=43.59 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=21.7
Q ss_pred EeCCEEEEccCCcEEEeCCCCceeEEeC
Q 025000 214 RLGDSWYPVQAGDVLWMAPFVPQWYAAL 241 (259)
Q Consensus 214 ~~~g~~~~v~~GD~i~~~~~~~H~~~n~ 241 (259)
-+.+=..-=..||+||+|+||||++.|.
T Consensus 795 GVe~WtfvQ~LGdAVfIPAGaPHQVrNL 822 (889)
T KOG1356|consen 795 GVEPWTFVQFLGDAVFIPAGAPHQVRNL 822 (889)
T ss_pred CCCccchhhcccceEEecCCCcHHhhhh
Confidence 3444444446799999999999999986
No 197
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=64.20 E-value=28 Score=30.21 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=43.0
Q ss_pred EeeCCCCCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCcee
Q 025000 169 KLLPQAVPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQW 237 (259)
Q Consensus 169 ~l~p~~~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~ 237 (259)
..+|+|. +..|..+-+.||.++|.| +|.--|...||+| .+-+..- ...+||++--.....|+
T Consensus 120 v~l~~dd--s~~V~llki~~g~s~P~H-tH~G~E~t~vl~G--~~sde~G--~y~vgD~~~~d~~v~H~ 181 (216)
T COG3806 120 VRLPTDD--SRRVALLKIEPGRSFPDH-THVGIERTAVLEG--AFSDENG--EYLVGDFTLADGTVQHS 181 (216)
T ss_pred cccCCCC--CceeEEEEeccCcccccc-cccceEEEEEEee--ccccCCC--ccccCceeecCCccccc
Confidence 3445543 344568888999999986 6655566777766 3433333 56679999999999998
No 198
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=63.46 E-value=23 Score=24.75 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=40.0
Q ss_pred EEEecCCcccCcceeeccceEEEEEEceEEEEeCC--EEEEccCCcEEEeCCCCceeEEe
Q 025000 183 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAA 240 (259)
Q Consensus 183 ~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n 240 (259)
.|+|.||..+...-... -.+-|.+|+.-++.+| +.|-+++||.+-++++..=++.+
T Consensus 1 ~~~L~~g~~~~lr~~~~--~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 1 TFELAPGETLSLRAAAG--QRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred CEEeCCCceEEeEcCCC--cEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 36788888876533333 3399999999999986 56777788877777776555444
No 199
>COG3758 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.98 E-value=65 Score=27.80 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=51.4
Q ss_pred cceEEEEecCCC--CCcEEEEEEEecCCCcCCCC-CCCceEEEEEEECE-EEEEEcCC--cEEEEeCCcEEEeCCCCcEE
Q 025000 48 NTLGAYLITPAM--GSHFVMYLANMQENARSALP-PHDVERFIFVVQGS-AMLTNASG--VSSKLMVDSYTYLPPNFAHS 121 (259)
Q Consensus 48 ~~~~~~l~sp~~--g~~f~~~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~-l~v~v~~g--e~~~L~~Gd~i~~p~~~~H~ 121 (259)
|.+..+-+.|.- .+.|...+..-.-....+.. ..+.+..+-||+|. +++.+ .| ....+.+.+-+-|+++++-.
T Consensus 22 G~T~EIav~P~~a~~~dF~WRiS~AtVa~~G~FS~fpGidR~lsvLeG~gm~L~~-~~~~~~~l~~~~qp~aF~gD~~v~ 100 (193)
T COG3758 22 GETNEIAVYPEGAAKRDFDWRISIATVAADGPFSLFPGIDRILSVLEGGGMTLSS-AGRAPVVLLRPLQPFAFAGDVPVH 100 (193)
T ss_pred CceEEEEEcCCCccccccceEEEEEeeccCCCccccCCcceEEEEEecCceEEec-CCCccceecCCCCcccccCCceEE
Confidence 446677778864 45677664433333333333 48999999999999 99998 66 34677888888888887665
Q ss_pred EE
Q 025000 122 LR 123 (259)
Q Consensus 122 ~~ 123 (259)
-+
T Consensus 101 a~ 102 (193)
T COG3758 101 AR 102 (193)
T ss_pred EE
Confidence 44
No 200
>PHA02890 hypothetical protein; Provisional
Probab=62.69 E-value=36 Score=30.70 Aligned_cols=48 Identities=13% Similarity=0.294 Sum_probs=38.1
Q ss_pred EEEEEECEEEEEE-cCC--cEEEEeCCcEEEeCCCCcEEEEeCCeEEEEEEE
Q 025000 86 FIFVVQGSAMLTN-ASG--VSSKLMVDSYTYLPPNFAHSLRAEGSATLVVFE 134 (259)
Q Consensus 86 f~yVl~G~l~v~v-~~g--e~~~L~~Gd~i~~p~~~~H~~~N~~~a~~l~v~ 134 (259)
|+.+|+|++++.+ .++ .+..+.+||.+.+.-+..|+... ...+++++.
T Consensus 95 FVlCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~T-Knl~L~Vik 145 (278)
T PHA02890 95 FVACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDS-DNVGLFITK 145 (278)
T ss_pred EEEEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEc-cceeEEEEE
Confidence 5567899998887 233 35799999999999999999875 567777764
No 201
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=62.22 E-value=13 Score=35.10 Aligned_cols=60 Identities=30% Similarity=0.476 Sum_probs=40.3
Q ss_pred cceEEEEEEecCCcccCcceeeccceEEEEEEceEEEE--eCC----------------------EEEEccCCcEEEeCC
Q 025000 177 FDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYR--LGD----------------------SWYPVQAGDVLWMAP 232 (259)
Q Consensus 177 ~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~--~~g----------------------~~~~v~~GD~i~~~~ 232 (259)
.+.++. -..|||+.+ -|..+=-.|+++|+|.=+ ++- ....+.|||++|+||
T Consensus 119 ddiMIS--~a~~GGgvg---~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp 193 (383)
T COG2850 119 DDIMIS--FAAPGGGVG---PHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPP 193 (383)
T ss_pred cceEEE--EecCCCccC---ccccchheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCC
Confidence 344444 346888655 566666789999998422 211 223478999999999
Q ss_pred CCceeEEeC
Q 025000 233 FVPQWYAAL 241 (259)
Q Consensus 233 ~~~H~~~n~ 241 (259)
+.+|-=.+-
T Consensus 194 ~~~H~gvae 202 (383)
T COG2850 194 GFPHYGVAE 202 (383)
T ss_pred CCCcCCccc
Confidence 999865544
No 202
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=61.76 E-value=16 Score=31.60 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=21.9
Q ss_pred CcEEEEeCCcEEEeCCCCcEEEEeCC
Q 025000 101 GVSSKLMVDSYTYLPPNFAHSLRAEG 126 (259)
Q Consensus 101 ge~~~L~~Gd~i~~p~~~~H~~~N~~ 126 (259)
|-...|.||+++-+|||.-|+|...+
T Consensus 152 g~~lkL~PGesitL~Pg~~HsFwae~ 177 (225)
T COG3822 152 GSQLKLSPGESITLPPGLYHSFWAEE 177 (225)
T ss_pred ceeEEECCCCcEecCCCceeeeeecC
Confidence 34468999999999999999999843
No 203
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=59.37 E-value=30 Score=30.85 Aligned_cols=47 Identities=13% Similarity=0.332 Sum_probs=36.1
Q ss_pred EEEEEceEEEEeCCEEEEccCCcEEEeCCCCc-eeEEeC-CCccEEEEE
Q 025000 204 LLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP-QWYAAL-GKTRTRYLL 250 (259)
Q Consensus 204 ~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~-H~~~n~-G~e~~~fi~ 250 (259)
+.=+-|.|.+..||+.|.+.+.|++|+.-|.. =.|... |..|.+|.+
T Consensus 80 iINIG~~G~i~v~g~~y~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~ 128 (278)
T COG3717 80 IINIGGPGTITVDGQEYELGHRDALYVGMGAKDVTFSSIDGAAPAKFYY 128 (278)
T ss_pred EEeeCCCceEEECCEEEEeccccEEEEecCccceEEeccCCCCcceEEE
Confidence 44567899999999999999999999998844 445444 336677654
No 204
>PHA02984 hypothetical protein; Provisional
Probab=58.88 E-value=23 Score=32.09 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=37.8
Q ss_pred EEEEceEEEEeCC----EEEEccCCcEEEeCCCCceeEEeCC----------CccEEEEEEeec
Q 025000 205 LLLEGQGIYRLGD----SWYPVQAGDVLWMAPFVPQWYAALG----------KTRTRYLLYKDV 254 (259)
Q Consensus 205 ~il~G~g~~~~~g----~~~~v~~GD~i~~~~~~~H~~~n~G----------~e~~~fi~~k~~ 254 (259)
.+|+|+..+.... ....|++|+.++|.-+..|.+.--- +.++.|++|||+
T Consensus 98 lCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~knl~L~Vi~y~v~~pfihykNv 161 (286)
T PHA02984 98 LCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDKNLHLAVITYTSNCPFIHYKNI 161 (286)
T ss_pred EEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCCceEEEEEEEEecceEEEeccE
Confidence 4588888776543 4567999999999999999987331 236678888875
No 205
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=57.56 E-value=75 Score=27.07 Aligned_cols=66 Identities=6% Similarity=0.032 Sum_probs=39.3
Q ss_pred EecCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcEE---EEeCCcEEEeCC----CCcEEEEeCCeEEEEEEE
Q 025000 69 NMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVSS---KLMVDSYTYLPP----NFAHSLRAEGSATLVVFE 134 (259)
Q Consensus 69 ~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v--~~ge~~---~L~~Gd~i~~p~----~~~H~~~N~~~a~~l~v~ 134 (259)
++++|...-......+.+++|++|.+.+.. .+|++. .+.+||++=... ..++.....++++++.+.
T Consensus 41 ~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~~~~~~~~a~~~~~i~~ip 115 (235)
T PRK11161 41 PIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGQHPSFAQALETSMVCEIP 115 (235)
T ss_pred eecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCCCCcceEEEeccEEEEEEE
Confidence 466665443333456889999999998775 235543 348898874332 122233335566777663
No 206
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=57.14 E-value=52 Score=28.42 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=41.4
Q ss_pred EEEecCCcccCcceeeccc---eEEEEE----EceEEEEeC-------------------CEE--EEccCCcEEEeCCCC
Q 025000 183 IMDFQPGDFLNVKEVHYNQ---HGLLLL----EGQGIYRLG-------------------DSW--YPVQAGDVLWMAPFV 234 (259)
Q Consensus 183 ~~t~~PG~~~~~~~~H~~e---h~~~il----~G~g~~~~~-------------------g~~--~~v~~GD~i~~~~~~ 234 (259)
...+++|+.... |.|... =+||+- .|.+.+.+- ..+ ..-++||++..|+..
T Consensus 100 ~ni~~~Gg~h~~-H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L 178 (201)
T TIGR02466 100 VNILPQGGTHSP-HLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWL 178 (201)
T ss_pred EEEcCCCCccCc-eECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCC
Confidence 345579998876 566543 446765 233333221 112 344899999999999
Q ss_pred ceeEEeCCCccEEEEEE
Q 025000 235 PQWYAALGKTRTRYLLY 251 (259)
Q Consensus 235 ~H~~~n~G~e~~~fi~~ 251 (259)
.|+..-...+.-+.-+.
T Consensus 179 ~H~v~p~~~~~~RISiS 195 (201)
T TIGR02466 179 RHEVPPNESEEERISVS 195 (201)
T ss_pred ceecCCCCCCCCEEEEE
Confidence 99987654444444433
No 207
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=56.72 E-value=34 Score=24.53 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=35.3
Q ss_pred EEEEEEecCCcccCcceeeccceEEEEEEceEEEEe---CC---EEEEccCCcEEEe
Q 025000 180 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GD---SWYPVQAGDVLWM 230 (259)
Q Consensus 180 ~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~---~g---~~~~v~~GD~i~~ 230 (259)
.++..++++|..+- .......+.|+|++|...+.. +| ....+.+||++-.
T Consensus 16 ~~~~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 16 ALEPVRYPAGEVII-RQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGE 71 (120)
T ss_pred hceEEEeCCCCEEE-eCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceech
Confidence 34567889999884 355556688999999997774 34 3455678997644
No 208
>PHA02890 hypothetical protein; Provisional
Probab=53.52 E-value=37 Score=30.60 Aligned_cols=50 Identities=8% Similarity=-0.019 Sum_probs=37.6
Q ss_pred EEEEceEEEEeCC----EEEEccCCcEEEeCCCCceeEEe--C------CCccEEEEEEeec
Q 025000 205 LLLEGQGIYRLGD----SWYPVQAGDVLWMAPFVPQWYAA--L------GKTRTRYLLYKDV 254 (259)
Q Consensus 205 ~il~G~g~~~~~g----~~~~v~~GD~i~~~~~~~H~~~n--~------G~e~~~fi~~k~~ 254 (259)
.+|+|++.+..+. ....|++||.+.|.-+-.|.+.- . =+.++.|++||++
T Consensus 97 lCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~TKnl~L~Viky~vd~pfiy~kNV 158 (278)
T PHA02890 97 ACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDSDNVGLFITKFEVDAHIFYGQNV 158 (278)
T ss_pred EEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEccceeEEEEEEEecceEEEecce
Confidence 4588988876553 45789999999999999999875 1 1136677888876
No 209
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=52.73 E-value=24 Score=29.31 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=32.6
Q ss_pred CCEEEEccCCcEEEeCCCCceeEEeCCC--ccEEEEEEee
Q 025000 216 GDSWYPVQAGDVLWMAPFVPQWYAALGK--TRTRYLLYKD 253 (259)
Q Consensus 216 ~g~~~~v~~GD~i~~~~~~~H~~~n~G~--e~~~fi~~k~ 253 (259)
+.+...+.|||++.+=||++|...+.+. ++.+=++.|.
T Consensus 110 ~e~~v~L~~G~faiFfP~e~H~P~c~~~~~~~IkKvVvKv 149 (154)
T COG2731 110 DESTVELNPGMFAIFFPGEPHRPGCNVGVPEPIKKVVVKV 149 (154)
T ss_pred cceEEEeCCCCEEEECCCCccccccccCCcceeEEEEEEE
Confidence 4678899999999999999999999877 7777777775
No 210
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=52.16 E-value=51 Score=32.01 Aligned_cols=52 Identities=10% Similarity=-0.043 Sum_probs=42.5
Q ss_pred ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEE
Q 025000 199 YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 199 ~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
.-++-+++-+|.+.+.-.=-..+|++||++.++-|+.+.+.-. +++.+-++.
T Consensus 153 DGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~-~gp~rgyi~ 204 (438)
T PRK05341 153 DGELLIVPQQGRLRLATELGVLDVEPGEIAVIPRGVKFRVELP-DGPARGYVC 204 (438)
T ss_pred CCCEEEEEEeCCEEEEEeccceEecCCCEEEEcCccEEEEecC-CCCeeEEEE
Confidence 4457789999999999999999999999999999999988843 345555443
No 211
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=51.58 E-value=74 Score=26.29 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=34.3
Q ss_pred CceEEEEEEECEEEEEE--cCCcE---EEEeCCcEEEeCC--CCcEE--EEeCCeEEEEEEE
Q 025000 82 DVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTYLPP--NFAHS--LRAEGSATLVVFE 134 (259)
Q Consensus 82 ~~Eef~yVl~G~l~v~v--~~ge~---~~L~~Gd~i~~p~--~~~H~--~~N~~~a~~l~v~ 134 (259)
....+++|++|.+.+.. .+|++ ..+.+||++=.++ +.++. ....++++++.+.
T Consensus 25 ~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A~~~~~v~~i~ 86 (202)
T PRK13918 25 PSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEAVTDSRIDVLN 86 (202)
T ss_pred CCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEEcCceEEEEEE
Confidence 35789999999998866 24554 3568999764332 22222 2236678887774
No 212
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=50.70 E-value=37 Score=28.19 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=33.6
Q ss_pred EEEEEEecCCcccCcceee--ccceEEEEEEceEEEEe---CCEE---EEccCCcEEE
Q 025000 180 NIHIMDFQPGDFLNVKEVH--YNQHGLLLLEGQGIYRL---GDSW---YPVQAGDVLW 229 (259)
Q Consensus 180 ~~~~~t~~PG~~~~~~~~H--~~eh~~~il~G~g~~~~---~g~~---~~v~~GD~i~ 229 (259)
.+...+|++|..+-. +.. ...+.|+|++|...+.. ||+. .-+.|||++=
T Consensus 5 ~~~~~~~~kg~~l~~-~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G 61 (202)
T PRK13918 5 VVDTVTYRPGAVILY-PGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFG 61 (202)
T ss_pred ccceeEecCCCEEEc-CCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeec
Confidence 355778889988732 444 33578999999997654 4553 3458999764
No 213
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=49.85 E-value=35 Score=31.14 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=35.9
Q ss_pred EEEEEEceEEEEe-CCEEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000 203 GLLLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQWYAALGKT 244 (259)
Q Consensus 203 ~~~il~G~g~~~~-~g~~~~v~~GD~i~~~~~~~H~~~n~G~e 244 (259)
.+++.+|...+.- ||++..+.++.++|++.+..|.+.|.-.+
T Consensus 41 li~v~~G~~~i~~~~g~~l~i~~p~~~~~p~~~~~~~~~~~~~ 83 (291)
T PRK15186 41 LIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHITMEETH 83 (291)
T ss_pred EEEeccceEEEEeCCCceEEeCCCeEEEEeCCcEEEEEecccC
Confidence 4678888888876 66789999999999999999999998643
No 214
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=49.13 E-value=37 Score=24.88 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=22.3
Q ss_pred ccCCcEEEeCC-CCceeEEeCCCccEEEEE
Q 025000 222 VQAGDVLWMAP-FVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 222 v~~GD~i~~~~-~~~H~~~n~G~e~~~fi~ 250 (259)
-++|++++.++ ...|+....+...-++++
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v~~~~~R~~l 95 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPVGEGGRRYSL 95 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE-EESEEEEE
T ss_pred CCCCEEEEEeCCCCeecCcccCCCCCEEEE
Confidence 78999999999 999999988555555554
No 215
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=48.18 E-value=44 Score=25.12 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=34.0
Q ss_pred eEEEEEEceEEEEeCCE--EEEccCCcEEEeCCCCceeEEeCCCccEEEEE
Q 025000 202 HGLLLLEGQGIYRLGDS--WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLL 250 (259)
Q Consensus 202 h~~~il~G~g~~~~~g~--~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~ 250 (259)
++..+==|.|.+.-+|+ ...|++||.+..+.+-.-.+..- ++.+.++=
T Consensus 36 ~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~-~~~y~i~~ 85 (93)
T cd00320 36 EGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLD-GEEYLILR 85 (93)
T ss_pred EEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEEC-CEEEEEEE
Confidence 44555567777777775 55699999999999988888764 34444443
No 216
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=47.91 E-value=63 Score=31.27 Aligned_cols=52 Identities=10% Similarity=-0.001 Sum_probs=42.9
Q ss_pred ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000 199 YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK 252 (259)
Q Consensus 199 ~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k 252 (259)
.-++-+++-+|.+.+.-.=-..+|++||++.++.|+.+.+.-.| +.+.++.-
T Consensus 147 DGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~g--p~rgyi~E 198 (429)
T TIGR01015 147 DGDFLIVPQQGALLITTEFGRLLVEPNEICVIPRGVRFRVTVLE--PARGYICE 198 (429)
T ss_pred CCCEEEEEEeCcEEEEEeccceEecCCCEEEecCccEEEEeeCC--CceEEEEe
Confidence 34477899999999999988999999999999999999988664 56555443
No 217
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=47.58 E-value=7.3 Score=29.01 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEceEEEEeCCEEEEccCCcEEEe
Q 025000 207 LEGQGIYRLGDSWYPVQAGDVLWM 230 (259)
Q Consensus 207 l~G~g~~~~~g~~~~v~~GD~i~~ 230 (259)
.+-+|.+++.|+.|-|+-||++++
T Consensus 58 ak~~Gkir~eGK~Yiv~DGDi~~f 81 (83)
T cd04867 58 AKEAGKYRQEGKDYVVQDGDIIFF 81 (83)
T ss_pred HHHcChhhhhCCceEeeCCeEEEE
Confidence 456789999999999999999976
No 218
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=44.92 E-value=8 Score=40.12 Aligned_cols=44 Identities=7% Similarity=0.044 Sum_probs=31.1
Q ss_pred CCCceEEEEEEECE-----EEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000 80 PHDVERFIFVVQGS-----AMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 80 ~~~~Eef~yVl~G~-----l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N 124 (259)
++-.++-+|+-.+- -+.-| ++=++.=..||.++||||.||+++|
T Consensus 773 hPIhDQS~YLd~~lr~RLkeEyGV-e~WtfvQ~LGdAVfIPAGaPHQVrN 821 (889)
T KOG1356|consen 773 HPIHDQSWYLDRYLRRRLKEEYGV-EPWTFVQFLGDAVFIPAGAPHQVRN 821 (889)
T ss_pred CCCcccceeccHHHHHHHHHHhCC-CccchhhcccceEEecCCCcHHhhh
Confidence 33445666665541 13334 5666777899999999999999999
No 219
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=44.56 E-value=1.6e+02 Score=25.10 Aligned_cols=66 Identities=9% Similarity=0.063 Sum_probs=39.8
Q ss_pred EecCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE---EEEeCCcEEEeCC---CCcEE--EEeCCeEEEEEEE
Q 025000 69 NMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTYLPP---NFAHS--LRAEGSATLVVFE 134 (259)
Q Consensus 69 ~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v--~~ge~---~~L~~Gd~i~~p~---~~~H~--~~N~~~a~~l~v~ 134 (259)
.+++|...-......+.+++|++|.+.+.. .+|++ ..+.+||++=..+ +.++. ....+++.++.+.
T Consensus 35 ~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~~i~ 110 (226)
T PRK10402 35 HFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECWCLALP 110 (226)
T ss_pred eeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEEEEEEE
Confidence 455664442223456789999999999876 24554 3577998776432 23332 2335567776663
No 220
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=43.30 E-value=12 Score=20.63 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=12.1
Q ss_pred CCceeEEeCCCccEEEE
Q 025000 233 FVPQWYAALGKTRTRYL 249 (259)
Q Consensus 233 ~~~H~~~n~G~e~~~fi 249 (259)
-|--||+|.|++.+-||
T Consensus 4 kCiNWFE~~ge~r~lyL 20 (22)
T PF08452_consen 4 KCINWFESRGEERFLYL 20 (22)
T ss_pred EEeehhhhCCceeEEEE
Confidence 46789999997655443
No 221
>PF05986 ADAM_spacer1: ADAM-TS Spacer 1; InterPro: IPR010294 This domain represents the Spacer-1 domain from the ADAM-TS family of metalloproteinases []. A cellular disintegrin and metalloproteinase (ADAM) is a family of genes with structural homology to the snake venom metalloproteinases and disintegrins []. There is variation amongst members of the family, however, all have a similar domain organisation comprising a preproregion, a reprolysin-type catalytic domain, a disintegrin-like domain, a thrombospondin type-1 (TS) module, a cysteine-rich domain, a spacer domain without cysteine residues, and a COOH-terminal TS module [, ]. They are involved in embryogenesis and have been implicated in some cancers and inflammatory diseases [].; GO: 0004222 metalloendopeptidase activity, 0031012 extracellular matrix
Probab=42.97 E-value=86 Score=24.26 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=30.6
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEE-ceEEEEeCCEEEEccCCcE
Q 025000 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLE-GQGIYRLGDSWYPVQAGDV 227 (259)
Q Consensus 181 ~~~~t~~PG~~~~~~~~H~~eh~~~il~-G~g~~~~~g~~~~v~~GD~ 227 (259)
..++++++|+.-=.........-++.|+ .+|.|.+||.|..-.+|.+
T Consensus 17 ~~v~~IP~GA~nI~I~e~~~s~n~Lalk~~~g~y~lNg~~~i~~~~~~ 64 (114)
T PF05986_consen 17 NKVVTIPAGARNIRITERRPSSNYLALKNSDGKYVLNGNWVISWPGTY 64 (114)
T ss_pred eEEEECCCCceEEEEEEeecCccEEEEEecCCcEEEcCCccccCCcCE
Confidence 3577777777632223333333455565 6799999999998777773
No 222
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=42.95 E-value=42 Score=27.32 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=21.4
Q ss_pred EEEEccCCcEEEeCCCCceeEE--eCCCccEEEEEEe
Q 025000 218 SWYPVQAGDVLWMAPFVPQWYA--ALGKTRTRYLLYK 252 (259)
Q Consensus 218 ~~~~v~~GD~i~~~~~~~H~~~--n~G~e~~~fi~~k 252 (259)
....+++|||+.+-|++.|.-. ..+.++.+=+++|
T Consensus 113 ~~i~l~~g~f~iffP~d~H~p~~~~~~~~~v~K~V~K 149 (153)
T PF04074_consen 113 SFITLKPGDFAIFFPEDAHRPGCAVDEPEPVRKVVFK 149 (153)
T ss_dssp EEEEE-TTEEEEE-TT--EEEEE-BTT--B-EEEEEE
T ss_pred eEEEEcCCEEEEECCCccccccccCCCCceEEEEEEE
Confidence 4678899999999999999944 4344677777776
No 223
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=41.59 E-value=40 Score=27.63 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=29.5
Q ss_pred CCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000 216 GDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK 252 (259)
Q Consensus 216 ~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k 252 (259)
.+.+..++|||++.+-|++.|.-. +.++.+=+++|
T Consensus 104 ~~~~v~l~~G~F~iffP~daH~P~--~~~~ikK~VvK 138 (149)
T PRK10202 104 CGETVEVHEGQIVICDIHEAYRFI--CNNAVKKVVLK 138 (149)
T ss_pred CCcEEEeCCCeEEEECCcccccCC--CCCcEEEEEEE
Confidence 345899999999999999999987 66777777777
No 224
>PF00829 Ribosomal_L21p: Ribosomal prokaryotic L21 protein; InterPro: IPR001787 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups: Bacterial L21. Marchantia polymorpha chloroplast L21. Cyanelle L21. Plant chloroplast L21 (nuclear-encoded). Bacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XG0_V 2X9S_V 2XG2_V 3UZ1_2 2Y19_V 2WDL_V 3V23_V 2WRO_V 2WRL_V 2Y11_V ....
Probab=41.53 E-value=29 Score=26.33 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEeCCEEEEccCCcEEEeCCC
Q 025000 211 GIYRLGDSWYPVQAGDVLWMAPF 233 (259)
Q Consensus 211 g~~~~~g~~~~v~~GD~i~~~~~ 233 (259)
+++.++|+-|.|.+||+++++.-
T Consensus 3 AIi~~ggkQykV~~gd~i~v~~l 25 (96)
T PF00829_consen 3 AIIEIGGKQYKVEEGDVIDVERL 25 (96)
T ss_dssp EEEESSSEEEEESSSEEEEEEST
T ss_pred EEEEECCEEEEEeCCCEEEECCc
Confidence 57889999999999999999743
No 225
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.34 E-value=23 Score=34.77 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=46.1
Q ss_pred ecCCCcC--CCCCCCceEEEEEEECEEEEEE-c------------C--------Cc---EEEEeCCcEEEeCCCCcEEEE
Q 025000 70 MQENARS--ALPPHDVERFIFVVQGSAMLTN-A------------S--------GV---SSKLMVDSYTYLPPNFAHSLR 123 (259)
Q Consensus 70 l~Pg~~~--~~h~~~~Eef~yVl~G~l~v~v-~------------~--------ge---~~~L~~Gd~i~~p~~~~H~~~ 123 (259)
|-|-++. .+|-.+.|-|+.=++|+=.-.+ . . |+ ...|++||.+|||.|.-|+-+
T Consensus 323 LTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~ 402 (629)
T KOG3706|consen 323 LTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQAD 402 (629)
T ss_pred ecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeecc
Confidence 4455555 4556789999999999742211 0 1 12 247999999999999999988
Q ss_pred eCC-eEEEEEEEEeccc
Q 025000 124 AEG-SATLVVFERRYAS 139 (259)
Q Consensus 124 N~~-~a~~l~v~~~y~p 139 (259)
-.. .-.+.+-.+.|+-
T Consensus 403 t~~~vHSlHvTlStyqq 419 (629)
T KOG3706|consen 403 TPALVHSLHVTLSTYQQ 419 (629)
T ss_pred ccchhceeEEEeehhhh
Confidence 633 2344555666653
No 226
>PLN02868 acyl-CoA thioesterase family protein
Probab=41.28 E-value=1.2e+02 Score=28.81 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=36.0
Q ss_pred eEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC---C--EEEEccCCcEEEe
Q 025000 179 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---D--SWYPVQAGDVLWM 230 (259)
Q Consensus 179 ~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~---g--~~~~v~~GD~i~~ 230 (259)
-.++..++++|..|- .+-..-.+.|+|++|+..+... | ....+++||++-.
T Consensus 29 ~~~~~~~~~~Ge~I~-~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 29 EVVVPKRYGKGEYVV-REGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred HhceEEEECCCCEEE-eCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 345678899999884 3455555889999999977552 2 2345689998763
No 227
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=40.76 E-value=69 Score=28.25 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=28.1
Q ss_pred CEEEEEE-cCCcEEEEeCCcEEEeCCCCcEEEEe-CCeEEEEE
Q 025000 92 GSAMLTN-ASGVSSKLMVDSYTYLPPNFAHSLRA-EGSATLVV 132 (259)
Q Consensus 92 G~l~v~v-~~ge~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~ 132 (259)
|++.+.- .+.++..+++|+.+.||+...|+..- ....|+..
T Consensus 130 GEl~~~~~~g~~~Vkp~aG~~vlfps~~lH~v~pVt~G~R~~~ 172 (226)
T PRK05467 130 GELVIEDTYGEHRVKLPAGDLVLYPSTSLHRVTPVTRGVRVAS 172 (226)
T ss_pred CceEEecCCCcEEEecCCCeEEEECCCCceeeeeccCccEEEE
Confidence 4444442 12356789999999999999999886 44444443
No 228
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=40.38 E-value=1.8e+02 Score=23.66 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=33.8
Q ss_pred CceEEEEEEECEEEEEE--cCCcE---EEEeCCcEEEeCC---CCc----EEEEeCCeEEEEEEE
Q 025000 82 DVERFIFVVQGSAMLTN--ASGVS---SKLMVDSYTYLPP---NFA----HSLRAEGSATLVVFE 134 (259)
Q Consensus 82 ~~Eef~yVl~G~l~v~v--~~ge~---~~L~~Gd~i~~p~---~~~----H~~~N~~~a~~l~v~ 134 (259)
..+.+++|++|.+.+.. .+|++ ..+.+||++=..+ +.+ ......++++++.+.
T Consensus 10 ~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~ 74 (193)
T TIGR03697 10 PAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVP 74 (193)
T ss_pred CCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEee
Confidence 45679999999998765 24554 4679999763221 221 223345677887774
No 229
>PLN02658 homogentisate 1,2-dioxygenase
Probab=40.06 E-value=1e+02 Score=29.98 Aligned_cols=72 Identities=8% Similarity=0.011 Sum_probs=50.4
Q ss_pred ceEEEEEEecCCcccCc--ceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCccEEEEEEe
Q 025000 178 DFNIHIMDFQPGDFLNV--KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYK 252 (259)
Q Consensus 178 ~~~~~~~t~~PG~~~~~--~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k 252 (259)
.+++++. .++.++.. --...-++-+++-+|.+.+.-.=-+.+|++||++.++.|+...+.-. +++.+.++.-
T Consensus 125 G~ai~iy--~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~L~v~pgei~VIPRG~~frv~l~-~gp~rgyv~E 198 (435)
T PLN02658 125 GYAIHMY--VANKSMDDCAFCNADGDFLIVPQQGRLWIKTELGKLQVSPGEIVVIPRGFRFAVDLP-DGPSRGYVLE 198 (435)
T ss_pred CcEEEEE--eCCCCCccceeecCCCCEEEEEEeCCEEEEEeccceEecCCCEEEecCccEEEEecC-CCCeeEEEEe
Confidence 3444443 35555421 12334457789999999999999999999999999999999888743 2466655443
No 230
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=40.04 E-value=55 Score=27.18 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=24.8
Q ss_pred CcEEEEeCCcEEEeCCCCcEEEE-e-C--CeEEEEEEE
Q 025000 101 GVSSKLMVDSYTYLPPNFAHSLR-A-E--GSATLVVFE 134 (259)
Q Consensus 101 ge~~~L~~Gd~i~~p~~~~H~~~-N-~--~~a~~l~v~ 134 (259)
.++.+|.+|+++.|=||.+|+.. + . ++.+=++|+
T Consensus 111 e~~v~L~~G~faiFfP~e~H~P~c~~~~~~~IkKvVvK 148 (154)
T COG2731 111 ESTVELNPGMFAIFFPGEPHRPGCNVGVPEPIKKVVVK 148 (154)
T ss_pred ceEEEeCCCCEEEECCCCccccccccCCcceeEEEEEE
Confidence 34568999999999999999876 2 2 455555554
No 231
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=37.50 E-value=46 Score=25.66 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEeCCEEEEccCCcEEEeCC
Q 025000 211 GIYRLGDSWYPVQAGDVLWMAP 232 (259)
Q Consensus 211 g~~~~~g~~~~v~~GD~i~~~~ 232 (259)
+++.++|+-|.|++||++.++-
T Consensus 3 AIi~~gGkQykV~~Gd~i~v~~ 24 (103)
T PRK05573 3 AIIKTGGKQYKVEEGDVIKVEK 24 (103)
T ss_pred EEEEECCEEEEEeCCCEEEEcc
Confidence 5788999999999999999974
No 232
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=37.30 E-value=1.1e+02 Score=27.49 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=39.4
Q ss_pred CCCcCCCCC--CCceEEEEEEECEEEEEE--cCCcE---EEEeCC-cEEEeCCCCcEEEEe-CCeEE
Q 025000 72 ENARSALPP--HDVERFIFVVQGSAMLTN--ASGVS---SKLMVD-SYTYLPPNFAHSLRA-EGSAT 129 (259)
Q Consensus 72 Pg~~~~~h~--~~~Eef~yVl~G~l~v~v--~~ge~---~~L~~G-d~i~~p~~~~H~~~N-~~~a~ 129 (259)
|++-...|. .+.-+.+.||+|++.+.. .+++. ..+.+. +.-.+|++.-|+... +.+++
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~ 86 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLE 86 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcE
Confidence 555445552 577889999999998877 23332 355554 465799999999986 34333
No 233
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=37.25 E-value=1.2e+02 Score=25.26 Aligned_cols=72 Identities=15% Similarity=0.034 Sum_probs=46.6
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEceEEEEeCCE-EEEccCCcEEE--------eCCCCceeEEeCCCccEEEEEE
Q 025000 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGDS-WYPVQAGDVLW--------MAPFVPQWYAALGKTRTRYLLY 251 (259)
Q Consensus 181 ~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g~-~~~v~~GD~i~--------~~~~~~H~~~n~G~e~~~fi~~ 251 (259)
..+.+|++|..-..-..-..+---++|+|+..+..||+ -|.|.|=.|+= ...+...+..-+-.++++||+.
T Consensus 28 ~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSPEW~s~~~s~~~~FQVTitA~~~Cryl~W 107 (153)
T PF04831_consen 28 CEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRFLHYIYPYQFLDSPEWESLRPSEDDKFQVTITAEEDCRYLCW 107 (153)
T ss_pred ceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEeeEeecccccccChhhhccccCCCCeEEEEEEEcCCcEEEEE
Confidence 66788888887654222233455689999999999996 35565544331 1233345556666789999987
Q ss_pred e
Q 025000 252 K 252 (259)
Q Consensus 252 k 252 (259)
.
T Consensus 108 ~ 108 (153)
T PF04831_consen 108 P 108 (153)
T ss_pred E
Confidence 4
No 234
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=37.10 E-value=70 Score=28.70 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=37.8
Q ss_pred CCcccCcceee-ccceEEEEEEceEEEEe-CCEEE-----EccC-CcEEEeCCCCceeEEeCC
Q 025000 188 PGDFLNVKEVH-YNQHGLLLLEGQGIYRL-GDSWY-----PVQA-GDVLWMAPFVPQWYAALG 242 (259)
Q Consensus 188 PG~~~~~~~~H-~~eh~~~il~G~g~~~~-~g~~~-----~v~~-GD~i~~~~~~~H~~~n~G 242 (259)
|++.+..|-|. +.-+.+-||+|+..+.. |++|. .+.+ ++.-+++|...|.+....
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 66666654443 33488999999976665 65443 3444 345579999999999873
No 235
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=37.01 E-value=47 Score=25.56 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEeCCEEEEccCCcEEEeC
Q 025000 211 GIYRLGDSWYPVQAGDVLWMA 231 (259)
Q Consensus 211 g~~~~~g~~~~v~~GD~i~~~ 231 (259)
+++.++|+-|.|++||++.+.
T Consensus 2 AIi~~gGkQykV~~Gd~i~Ve 22 (101)
T TIGR00061 2 AIVEIGGKQYKVEEGQTVRIE 22 (101)
T ss_pred EEEEECCEEEEEeCCCEEEEc
Confidence 578899999999999999986
No 236
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=36.93 E-value=92 Score=25.32 Aligned_cols=68 Identities=9% Similarity=0.041 Sum_probs=41.4
Q ss_pred EEEecCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcEE---EEeCCcEEEeCCCC-----cEEEEeCCeEEEEEEE
Q 025000 67 LANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVSS---KLMVDSYTYLPPNF-----AHSLRAEGSATLVVFE 134 (259)
Q Consensus 67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v--~~ge~~---~L~~Gd~i~~p~~~-----~H~~~N~~~a~~l~v~ 134 (259)
...+++|...-......+.+++|++|.+.+.. .+|++. .+++||++=..+-. .+..+..++++++.+.
T Consensus 25 ~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~~~ 102 (214)
T COG0664 25 VRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIP 102 (214)
T ss_pred eEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEcceEEEEEec
Confidence 44555663322223445669999999998877 234443 46699998766522 2333345567777774
No 237
>PRK11396 hypothetical protein; Provisional
Probab=36.67 E-value=2.8e+02 Score=23.90 Aligned_cols=98 Identities=12% Similarity=-0.041 Sum_probs=58.2
Q ss_pred CCCCCCccc-CCceEEEEEee-CCC-CCcceEEEEEEecCCcccCcceeeccceEEEEEEceEEEEe-CC-EEEEccCCc
Q 025000 152 TDKQPLLET-PGEVFQLRKLL-PQA-VPFDFNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL-GD-SWYPVQAGD 226 (259)
Q Consensus 152 ~~di~~~~~-~g~~~~~~~l~-p~~-~~~~~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~-~g-~~~~v~~GD 226 (259)
..++|..+- +|++.+.+.+. |.. ..|++-+.+-+++-.+. +-.--+.+-.+.+|+|.|+... ++ ..+.+++++
T Consensus 6 ~~~mp~~~WkNGgG~TrEI~~~P~~~~dF~WRiSiA~I~~~Gp--FS~FpGidR~i~lL~G~g~~L~~~~~~~~~l~~~~ 83 (191)
T PRK11396 6 MRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIAANGE--FSLFPGMERIVTLLEGGEMFLESADRFNHTLKPLQ 83 (191)
T ss_pred HhHCCcccccCCCeEEEEEEEcCCCCCCceEEEEEEEecCCCC--CCCCCCccEEEEEEECCCEEEeeCCccceecCCCC
Confidence 445665554 46666666654 653 35666666666554333 3334566788999999776555 44 346778888
Q ss_pred EEEeCCCCceeEEeC-CC--ccEEEEEE
Q 025000 227 VLWMAPFVPQWYAAL-GK--TRTRYLLY 251 (259)
Q Consensus 227 ~i~~~~~~~H~~~n~-G~--e~~~fi~~ 251 (259)
-+..+-...=..+.+ |. .+|-.++=
T Consensus 84 p~~F~Gd~~v~a~L~~G~v~~dfNvM~r 111 (191)
T PRK11396 84 PFAFAADQVVKAKLTAGQMSMDFNIMTR 111 (191)
T ss_pred CeEeCCCCeeEEEECCCCeEEEEEEEec
Confidence 777666655444444 32 35555553
No 238
>KOG1686 consensus Mitochondrial/chloroplast ribosomal L21 protein [Translation, ribosomal structure and biogenesis]
Probab=35.95 E-value=46 Score=27.33 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=28.4
Q ss_pred EEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000 207 LEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT 244 (259)
Q Consensus 207 l~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e 244 (259)
-+|=+++.+|+.-+.|..||.|||+-+.+ .|.+|+
T Consensus 24 ~~~favv~v~srq~kvs~gd~iy~eg~~p---~nv~d~ 58 (151)
T KOG1686|consen 24 PSGFAVVSVGSRQRKVSSGDTIYTEGLKP---KNVLDS 58 (151)
T ss_pred CCccEEEEEcceeEEecCCCeeeecCccc---cccccc
Confidence 35678899999999999999999998876 344443
No 239
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=35.90 E-value=1e+02 Score=26.35 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=35.2
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEceEEEEe---CCEE---EEccCCcEEEe
Q 025000 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GDSW---YPVQAGDVLWM 230 (259)
Q Consensus 181 ~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~---~g~~---~~v~~GD~i~~ 230 (259)
.....+++|..+- .+.....+.|+|++|...+.. ||+. .-+.+||++-.
T Consensus 31 ~~~~~~~kge~l~-~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 31 TELFHFLAREYIV-QEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGE 85 (226)
T ss_pred hhheeeCCCCEEE-cCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEe
Confidence 4456788998874 355556689999999998754 6654 34679998654
No 240
>PF10949 DUF2777: Protein of unknown function (DUF2777); InterPro: IPR024488 This family of proteins with unknown function appears to be restricted to Bacillaceae.
Probab=35.83 E-value=57 Score=27.95 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=32.8
Q ss_pred ceeeccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCc
Q 025000 195 KEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVP 235 (259)
Q Consensus 195 ~~~H~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~ 235 (259)
+....|..+.|. +.|.+..+|+.++++-||.|.+.--..
T Consensus 52 ~~~~~W~~g~l~--~~~~v~~~~e~~~L~~ge~IRi~K~l~ 90 (185)
T PF10949_consen 52 FRDGRWMKGILF--DQGIVSIDGEQIPLSNGESIRIRKKLF 90 (185)
T ss_pred EECCcEEEEEEe--cCceEEeCCeEEecCCCCEEEEeeccc
Confidence 456678888777 999999999999999999999875544
No 241
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=35.38 E-value=5.4 Score=29.80 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=16.5
Q ss_pred EceEEEEeCCEEEEccCCcEEEeC
Q 025000 208 EGQGIYRLGDSWYPVQAGDVLWMA 231 (259)
Q Consensus 208 ~G~g~~~~~g~~~~v~~GD~i~~~ 231 (259)
+-+|.+++.|+.|.|+-||+|++.
T Consensus 59 k~~Gk~r~eGK~YivqDGDIi~f~ 82 (84)
T PF06071_consen 59 KEAGKLRLEGKDYIVQDGDIIHFR 82 (84)
T ss_dssp HHTT-SEEEETT-B--TTEEEEEE
T ss_pred HHcCCccccCCceeEeCCCEEEEE
Confidence 346788999999999999999864
No 242
>PLN02868 acyl-CoA thioesterase family protein
Probab=34.75 E-value=93 Score=29.55 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=39.5
Q ss_pred EEEecCCCcCCCCCCCceEEEEEEECEEEEEE--cCCcE--EEEeCCcEEEeCC-CCcE--EEEeCCeEEEEEE
Q 025000 67 LANMQENARSALPPHDVERFIFVVQGSAMLTN--ASGVS--SKLMVDSYTYLPP-NFAH--SLRAEGSATLVVF 133 (259)
Q Consensus 67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v--~~ge~--~~L~~Gd~i~~p~-~~~H--~~~N~~~a~~l~v 133 (259)
..++++|...-......+.+++|++|++++.. .+|+. ..+++||++=..- +.++ ..+..++++++.+
T Consensus 33 ~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~l~~~~~~~~~~A~~d~~v~~i 106 (413)
T PLN02868 33 PKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYGLSGSVHSADVVAVSELTCLVL 106 (413)
T ss_pred EEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehhhCCCCcccEEEECCCEEEEEE
Confidence 34566765543333456789999999999876 12332 4678999876431 1111 1122556666665
No 243
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=34.39 E-value=72 Score=27.55 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=33.6
Q ss_pred EceEEEEeCCEEEEccCCcEEEe--CCCCceeE-----EeCCC-ccEEEEEEeec
Q 025000 208 EGQGIYRLGDSWYPVQAGDVLWM--APFVPQWY-----AALGK-TRTRYLLYKDV 254 (259)
Q Consensus 208 ~G~g~~~~~g~~~~v~~GD~i~~--~~~~~H~~-----~n~G~-e~~~fi~~k~~ 254 (259)
+-.+-+.++|-.+++..||++-+ .=|++=-+ ++||+ .-|-||||.|-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQ 87 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQ 87 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCc
Confidence 44566778889999999998644 33444222 56787 68999999983
No 244
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=33.02 E-value=6.9 Score=30.94 Aligned_cols=46 Identities=17% Similarity=0.427 Sum_probs=28.6
Q ss_pred EEEEEEecCCcccCcceeeccceEEEEEEce---EEEEeCC-EEEEccCCcEEEeCCCCc
Q 025000 180 NIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQ---GIYRLGD-SWYPVQAGDVLWMAPFVP 235 (259)
Q Consensus 180 ~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~---g~~~~~g-~~~~v~~GD~i~~~~~~~ 235 (259)
.+.+..+.-|..+ + -|++.|+ |.+.+|| --+.+++||.|.+.+|..
T Consensus 43 ~V~V~Nv~nG~Rf---------~-TYvI~g~~GSg~I~lNGaAArl~~~GD~vII~sy~~ 92 (116)
T PF02261_consen 43 QVQVVNVNNGERF---------E-TYVIPGERGSGVICLNGAAARLVQVGDRVIIMSYAQ 92 (116)
T ss_dssp EEEEEETTT--EE---------E-EEEEEESTTTT-EEEEGGGGGCS-TT-EEEEEEEEE
T ss_pred EEEEEECCCCcEE---------E-EEEEEccCCCcEEEECCHHHhccCCCCEEEEEEccc
Confidence 3556666666553 2 3566654 7999999 467899999999988753
No 245
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.70 E-value=1.7e+02 Score=27.92 Aligned_cols=46 Identities=7% Similarity=-0.056 Sum_probs=38.7
Q ss_pred ccceEEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEEeCCCc
Q 025000 199 YNQHGLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYAALGKT 244 (259)
Q Consensus 199 ~~eh~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~n~G~e 244 (259)
.-|+.+++-+|+..+.-.=...+|++||+..||-|..=-.+-...+
T Consensus 145 Dge~Livpq~G~l~l~te~G~l~v~pgeiavIPRG~~frve~~~~~ 190 (427)
T COG3508 145 DGELLIVPQQGELRLKTELGVLEVEPGEIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred CCCEEEEeecceEEEEEeeceEEecCCcEEEeeCCceEEEEecCCc
Confidence 4557889999999999888899999999999999988766665444
No 246
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=32.25 E-value=37 Score=27.59 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=18.6
Q ss_pred EEEEccCCcEEEeCCCCceeEEe
Q 025000 218 SWYPVQAGDVLWMAPFVPQWYAA 240 (259)
Q Consensus 218 ~~~~v~~GD~i~~~~~~~H~~~n 240 (259)
...++++||++++.+...|+-..
T Consensus 180 ~~~~~~~Gdvl~~~~~~~H~s~~ 202 (211)
T PF05721_consen 180 VPVPMKAGDVLFFHSRLIHGSGP 202 (211)
T ss_dssp EEE-BSTTEEEEEETTSEEEEE-
T ss_pred EEeecCCCeEEEEcCCccccCCC
Confidence 46778999999999999998654
No 247
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=32.11 E-value=23 Score=33.48 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=16.4
Q ss_pred EEEccCCcEEEeCCCCceeEEe
Q 025000 219 WYPVQAGDVLWMAPFVPQWYAA 240 (259)
Q Consensus 219 ~~~v~~GD~i~~~~~~~H~~~n 240 (259)
...++||+.+|+++|.+|+|--
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 3578888999999999999863
No 248
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=31.83 E-value=24 Score=25.87 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=23.3
Q ss_pred EEEccCCcEEEeCCCCceeEEeCCCccEEEEEEee
Q 025000 219 WYPVQAGDVLWMAPFVPQWYAALGKTRTRYLLYKD 253 (259)
Q Consensus 219 ~~~v~~GD~i~~~~~~~H~~~n~G~e~~~fi~~k~ 253 (259)
..=++.||++.+.|-..+ +--+.+..++|+||
T Consensus 36 ~iWIkrGd~VlV~p~~~~---~kvkgeIv~i~~~~ 67 (78)
T cd05792 36 NIWIKRGDFVLVEPIEEG---DKVKAEIVKILTRD 67 (78)
T ss_pred cEEEEeCCEEEEEecccC---CceEEEEEEEECHH
Confidence 445789999999887632 32346888998886
No 249
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=31.82 E-value=2.6e+02 Score=23.67 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=41.1
Q ss_pred EEEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcE---EEEeCCcEEEeC---CCCcE--EEEeCCeEEEEEEEE
Q 025000 67 LANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVS---SKLMVDSYTYLP---PNFAH--SLRAEGSATLVVFER 135 (259)
Q Consensus 67 ~~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~ge~---~~L~~Gd~i~~p---~~~~H--~~~N~~~a~~l~v~~ 135 (259)
...+++|...-......+.+++|++|.+.+.. .+|+. ..+.+||++-.. .+.++ .+...++++++.+.+
T Consensus 32 ~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i~~ 109 (236)
T PRK09392 32 LQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMIPA 109 (236)
T ss_pred eeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEEeH
Confidence 34566665443223456889999999998865 12332 367788865321 13333 334467788888743
No 250
>COG3615 TehB Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=29.77 E-value=1.8e+02 Score=22.31 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=33.8
Q ss_pred CCceEEEEEEECEEEEEEcCCc-------EEEEeCCcEEEeCCCCcEEEEe-CC--eEEEEEE
Q 025000 81 HDVERFIFVVQGSAMLTNASGV-------SSKLMVDSYTYLPPNFAHSLRA-EG--SATLVVF 133 (259)
Q Consensus 81 ~~~Eef~yVl~G~l~v~v~~ge-------~~~L~~Gd~i~~p~~~~H~~~N-~~--~a~~l~v 133 (259)
.+.---+-||+|.+++.--+++ .+...+ +.-+|||..-|++.. +. ..++-++
T Consensus 34 ~G~w~kLsVl~G~vk~~~~~ee~~~~~e~~~~~ea-~~~~~~PQ~WHrVea~tDD~e~~l~Fy 95 (99)
T COG3615 34 PGTWGKLSVLKGAVKFLGLAEEGETEPEHVFSIEA-QFPVFPPQAWHRVEAMTDDAEFNLSFY 95 (99)
T ss_pred CCceeEEEEEeceeEEEEEcCCCCccceEEEeecC-CCCccChhHeeeeeecccccEEEEEEE
Confidence 3444556899999987541222 234455 888999999999996 33 4444444
No 251
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=29.16 E-value=1.2e+02 Score=25.28 Aligned_cols=68 Identities=10% Similarity=0.208 Sum_probs=43.9
Q ss_pred EEEEecCCCcCCCC-CCCceEEEEEEECEEEEEEcCCcE-EEEeCCcEEEeC--------CCCcEEEE--eCCeEEEEEE
Q 025000 66 YLANMQENARSALP-PHDVERFIFVVQGSAMLTNASGVS-SKLMVDSYTYLP--------PNFAHSLR--AEGSATLVVF 133 (259)
Q Consensus 66 ~~~~l~Pg~~~~~h-~~~~Eef~yVl~G~l~v~v~~ge~-~~L~~Gd~i~~p--------~~~~H~~~--N~~~a~~l~v 133 (259)
-+.+|.+|...... .-..+..-.+|+|.+.|+. +|+. |.+.|-+++=-| .+...+.. +++++|++..
T Consensus 29 ~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~-~g~fLH~I~p~qFlDSPEW~s~~~s~~~~FQVTitA~~~Cryl~W 107 (153)
T PF04831_consen 29 EIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC-DGRFLHYIYPYQFLDSPEWESLRPSEDDKFQVTITAEEDCRYLCW 107 (153)
T ss_pred eEEEecCCceeeecCCcccceEeEEEcCcEEEEE-CCEeeEeecccccccChhhhccccCCCCeEEEEEEEcCCcEEEEE
Confidence 45678888766433 2345899999999999999 8876 566666555333 22222222 3667777655
Q ss_pred E
Q 025000 134 E 134 (259)
Q Consensus 134 ~ 134 (259)
.
T Consensus 108 ~ 108 (153)
T PF04831_consen 108 P 108 (153)
T ss_pred E
Confidence 3
No 252
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=29.09 E-value=1e+02 Score=25.73 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=29.3
Q ss_pred CCEEEEccCCcEEEeCCC-CceeEEeCC------CccEEEEEE
Q 025000 216 GDSWYPVQAGDVLWMAPF-VPQWYAALG------KTRTRYLLY 251 (259)
Q Consensus 216 ~g~~~~v~~GD~i~~~~~-~~H~~~n~G------~e~~~fi~~ 251 (259)
.|.....++||+++...+ ..|+....- .+.+.+.+|
T Consensus 126 ~g~~~~~~~GtVl~~~~~~~~Hgvtpv~~~~~~~~~R~slvfy 168 (171)
T PF12851_consen 126 LGVAFAYQPGTVLIFCAKRELHGVTPVESPNRNHGTRISLVFY 168 (171)
T ss_pred CCEEEecCCCcEEEEcccceeeecCcccCCCCCCCeEEEEEEE
Confidence 678889999999999999 779998876 466666665
No 253
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=28.96 E-value=1.1e+02 Score=26.07 Aligned_cols=46 Identities=17% Similarity=-0.065 Sum_probs=32.0
Q ss_pred EEEecCCcccCcceeeccceEEEEEEceEEEEe---CCEEE---EccCCcEEE
Q 025000 183 IMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRL---GDSWY---PVQAGDVLW 229 (259)
Q Consensus 183 ~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~---~g~~~---~v~~GD~i~ 229 (259)
...+++|..+- .+-....+.|+|++|...+.. ||+.. -+.+||++-
T Consensus 39 ~~~~~kge~l~-~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g 90 (235)
T PRK11161 39 KKPIQKGQTLF-KAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVG 90 (235)
T ss_pred ceeecCCCEeE-CCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceec
Confidence 45788998874 355556688999999996553 35443 348999874
No 254
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=28.92 E-value=1.7e+02 Score=25.21 Aligned_cols=69 Identities=7% Similarity=0.094 Sum_probs=38.8
Q ss_pred EEEEEEecCCCcCCCCCCC---ceEEEEEE----ECEEEEEEc-------------------CCc-EEEEeCCcEEEeCC
Q 025000 64 VMYLANMQENARSALPPHD---VERFIFVV----QGSAMLTNA-------------------SGV-SSKLMVDSYTYLPP 116 (259)
Q Consensus 64 ~~~~~~l~Pg~~~~~h~~~---~Eef~yVl----~G~l~v~v~-------------------~ge-~~~L~~Gd~i~~p~ 116 (259)
..+.+.+.+|+....|.|. ..-.+||- .|.+++.-. ... ...-++|+.+.||+
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS 176 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES 176 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence 4567777888877776432 33444554 233332210 000 12337889999999
Q ss_pred CCcEEEE-e-CCeEEEEE
Q 025000 117 NFAHSLR-A-EGSATLVV 132 (259)
Q Consensus 117 ~~~H~~~-N-~~~a~~l~ 132 (259)
-..|... | .+.-|+.+
T Consensus 177 ~L~H~v~p~~~~~~RISi 194 (201)
T TIGR02466 177 WLRHEVPPNESEEERISV 194 (201)
T ss_pred CCceecCCCCCCCCEEEE
Confidence 9999876 4 33445544
No 255
>PRK04980 hypothetical protein; Provisional
Probab=28.84 E-value=51 Score=25.48 Aligned_cols=51 Identities=18% Similarity=0.364 Sum_probs=34.3
Q ss_pred EEEEceEEEEe-CCEEEEccCCcEEEeCCCCce-eEEeCCCccEEEEEEeecC
Q 025000 205 LLLEGQGIYRL-GDSWYPVQAGDVLWMAPFVPQ-WYAALGKTRTRYLLYKDVN 255 (259)
Q Consensus 205 ~il~G~g~~~~-~g~~~~v~~GD~i~~~~~~~H-~~~n~G~e~~~fi~~k~~n 255 (259)
.||+|+=..++ ++.+...++||.+.+.-++.. .+-..--..++.+-|.|+|
T Consensus 14 ~ILsGkKTiTiRd~se~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i~f~eLt 66 (102)
T PRK04980 14 DILAGRKTITIRDESESHFKPGDVLRVGTFEDDRYFCTIEVLSVSPVTFDELN 66 (102)
T ss_pred HHHcCCceEEeeCCcccCCCCCCEEEEEECCCCcEEEEEEEEEEEEEehhhCC
Confidence 37889888888 456888999999999544333 3333333566666666665
No 256
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=28.47 E-value=69 Score=26.76 Aligned_cols=77 Identities=14% Similarity=0.293 Sum_probs=53.4
Q ss_pred CcEEEEEEEecCCCcCCCCC-CCceEEEEEEECEEEEEE---cCC--------cEEEEeCCcEEEeCCCC-cEEEEe---
Q 025000 61 SHFVMYLANMQENARSALPP-HDVERFIFVVQGSAMLTN---ASG--------VSSKLMVDSYTYLPPNF-AHSLRA--- 124 (259)
Q Consensus 61 ~~f~~~~~~l~Pg~~~~~h~-~~~Eef~yVl~G~l~v~v---~~g--------e~~~L~~Gd~i~~p~~~-~H~~~N--- 124 (259)
.+|..++.-..+|-+++.|. .++.-|+=+|+|+++=+. .+. -+.+++..++.|+.-.. -|+..|
T Consensus 70 GKfNLmILCWGeGhgSSvHDHtdsHCF~KmL~G~L~Et~yawPd~ks~e~v~isE~~~~~N~vaYiND~lGLHRvEN~SH 149 (196)
T KOG4064|consen 70 GKFNLMILCWGEGHGSSVHDHTDSHCFVKMLDGELTETKYAWPDRKSHEPVDISEKTYGMNGVAYINDELGLHRVENLSH 149 (196)
T ss_pred CeEeEEEEEecCCCCccccccccchhHHHHhcCcchhhcccCCCcccCccccccceeeeccceEEecccccceecccccc
Confidence 47999999999998888774 466777789999985332 111 12467888899987765 488888
Q ss_pred -CCeEEEEEEEEec
Q 025000 125 -EGSATLVVFERRY 137 (259)
Q Consensus 125 -~~~a~~l~v~~~y 137 (259)
++.+.+..+..||
T Consensus 150 s~~aVSLHLY~PPf 163 (196)
T KOG4064|consen 150 SNGAVSLHLYIPPF 163 (196)
T ss_pred CCCceEEEEecCCc
Confidence 3345565655444
No 257
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=28.36 E-value=68 Score=27.79 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=28.6
Q ss_pred CCcEEEEeCCcEEEeCCCCcEEEEe----CCeEEEEEEEEe
Q 025000 100 SGVSSKLMVDSYTYLPPNFAHSLRA----EGSATLVVFERR 136 (259)
Q Consensus 100 ~ge~~~L~~Gd~i~~p~~~~H~~~N----~~~a~~l~v~~~ 136 (259)
++....|-+||-+.+|+..-|...- ..-+.|.|+...
T Consensus 142 g~h~VklPAGdLVlypStSlH~VtPVTRg~R~asffW~qsl 182 (229)
T COG3128 142 GNHRVKLPAGDLVLYPSTSLHEVTPVTRGERFASFFWIQSL 182 (229)
T ss_pred cceEEeccCCCEEEcccccceeccccccCceEEEeeehHHH
Confidence 4456688999999999999999864 336778887543
No 258
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=28.14 E-value=1.3e+02 Score=23.06 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=33.4
Q ss_pred eEEEEEEceEEEEeCC--EEEEccCCcEEEeCCCCceeEEeCCC
Q 025000 202 HGLLLLEGQGIYRLGD--SWYPVQAGDVLWMAPFVPQWYAALGK 243 (259)
Q Consensus 202 h~~~il~G~g~~~~~g--~~~~v~~GD~i~~~~~~~H~~~n~G~ 243 (259)
++-.|==|.|....|| ...+|+.||.|+++.|-...++.-|+
T Consensus 37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge 80 (96)
T COG0234 37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGE 80 (96)
T ss_pred ceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCE
Confidence 5556666888888888 45679999999999999888776554
No 259
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=28.01 E-value=26 Score=28.04 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=34.2
Q ss_pred eEEEEEEecCCcccCcceeeccceEEEE--EEceEEEEeCC-EEEEccCCcEEEeCCCCc
Q 025000 179 FNIHIMDFQPGDFLNVKEVHYNQHGLLL--LEGQGIYRLGD-SWYPVQAGDVLWMAPFVP 235 (259)
Q Consensus 179 ~~~~~~t~~PG~~~~~~~~H~~eh~~~i--l~G~g~~~~~g-~~~~v~~GD~i~~~~~~~ 235 (259)
-.+.+....-|+.+ ++|-| -.|.|++.+|| --+-+++||.+.+.+++.
T Consensus 41 EkV~I~N~nNGaRf---------~TYvI~g~rGSg~I~lNGAAArl~~~GD~VII~sy~~ 91 (126)
T COG0853 41 EKVDIVNVNNGARF---------STYVIAGERGSGVICLNGAAARLVQVGDLVIIMSYAQ 91 (126)
T ss_pred ceEEEEECCCCcEE---------EEEEEEccCCCcEEEechHHHhhCCCCCEEEEEEccc
Confidence 34556666666653 23333 24678999999 468899999999998875
No 260
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=27.09 E-value=1.1e+02 Score=24.78 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=34.5
Q ss_pred eEEEEEEecCCcccCcceeeccceEEEEEEceEEEEeC---CEEE---EccCCcEEEeC
Q 025000 179 FNIHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLG---DSWY---PVQAGDVLWMA 231 (259)
Q Consensus 179 ~~~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~---g~~~---~v~~GD~i~~~ 231 (259)
..+....+++|..+ +.+-..-...|+|++|...+... |++. .+++||++=-.
T Consensus 21 ~~~~~~~~~~g~~l-~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~ 78 (214)
T COG0664 21 LKLEVRKLPKGEVL-FTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGEL 78 (214)
T ss_pred hhceeEeeCCCCEE-EcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhH
Confidence 45567778888766 33444555789999999977665 3333 46688886433
No 261
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=27.04 E-value=97 Score=31.51 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=26.4
Q ss_pred CCceEEEEEEECEEEEEEcCCcE-EEEeCCcEE
Q 025000 81 HDVERFIFVVQGSAMLTNASGVS-SKLMVDSYT 112 (259)
Q Consensus 81 ~~~Eef~yVl~G~l~v~v~~ge~-~~L~~Gd~i 112 (259)
...+-.+||++|.+++.- |+|. -.|++||.+
T Consensus 587 ESvDaLcFvVsGSLEVIQ-DDEVVAILGKGDVF 618 (971)
T KOG0501|consen 587 ESVDALCFVVSGSLEVIQ-DDEVVAILGKGDVF 618 (971)
T ss_pred CccceEEEEEecceEEee-cCcEEEEeecCccc
Confidence 567889999999999987 7776 489999975
No 262
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=27.03 E-value=4.1e+02 Score=23.49 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=37.2
Q ss_pred CCCCCCceEEEEEEECEEEEEEcCCcEEEEeCCcEEEeCCCCcEEEEe
Q 025000 77 ALPPHDVERFIFVVQGSAMLTNASGVSSKLMVDSYTYLPPNFAHSLRA 124 (259)
Q Consensus 77 ~~h~~~~Eef~yVl~G~l~v~v~~ge~~~L~~Gd~i~~p~~~~H~~~N 124 (259)
+......|-.++.++|+..++. +|.++.|++...+.+.++..- |.|
T Consensus 221 ~~~~~~v~~~~w~~e~s~vv~~-~g~~~~~~~~s~~~~~~~s~~-~~~ 266 (279)
T KOG3995|consen 221 EGLRQNVDVWLWQLEGSSVVTM-GGRRLSLAPDSLLVLAGTSYA-WER 266 (279)
T ss_pred hhhcCceEEEEEEecCceEEee-cCeEEeeCCcceEEEcCcchh-hhh
Confidence 3335678999999999999998 999999999888888766543 444
No 263
>CHL00075 rpl21 ribosomal protein L21
Probab=26.83 E-value=87 Score=24.41 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=19.2
Q ss_pred EEEEeCCEEEEccCCcEEEeC
Q 025000 211 GIYRLGDSWYPVQAGDVLWMA 231 (259)
Q Consensus 211 g~~~~~g~~~~v~~GD~i~~~ 231 (259)
+++.++|+-|.|++||++.+.
T Consensus 5 AIi~~gGkQykV~~Gd~i~ve 25 (108)
T CHL00075 5 AIIEAGGKQLWVEPGRFYDIN 25 (108)
T ss_pred EEEEECCEEEEEeCCCEEEEE
Confidence 678899999999999999886
No 264
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=26.62 E-value=87 Score=27.04 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=36.4
Q ss_pred EEEecCCcccCcceeeccc--e-----------EEEEEEceEEEEeCCEEEEccCCcEEEeCCCCceeEE
Q 025000 183 IMDFQPGDFLNVKEVHYNQ--H-----------GLLLLEGQGIYRLGDSWYPVQAGDVLWMAPFVPQWYA 239 (259)
Q Consensus 183 ~~t~~PG~~~~~~~~H~~e--h-----------~~~il~G~g~~~~~g~~~~v~~GD~i~~~~~~~H~~~ 239 (259)
+..+.||.+|+.|.-..++ . ..|.+.|+.. +--...+++..||++.|..-+.+.+.
T Consensus 110 vn~Y~pGd~ig~HqD~~e~~~~~~v~slSLg~~~~F~~~~~~r-~~~~~~~~L~~Gdvvvm~G~~r~~~~ 178 (194)
T COG3145 110 VNRYRPGASIGWHQDKDEEDDRPPVASLSLGAPCIFRLRGRRR-RGPGLRLRLEHGDVVVMGGPSRLAWH 178 (194)
T ss_pred EEeccCCCccccccccccccCCCceEEEecCCCeEEEeccccC-CCCceeEEecCCCEEEecCCcccccc
Confidence 4566788888863322222 1 1344555555 44556799999999999988875444
No 265
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=26.60 E-value=35 Score=32.33 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=23.9
Q ss_pred EEceEEEEeCCEEEEccCCcEEEeCCC
Q 025000 207 LEGQGIYRLGDSWYPVQAGDVLWMAPF 233 (259)
Q Consensus 207 l~G~g~~~~~g~~~~v~~GD~i~~~~~ 233 (259)
.+-.|.+++.|+.|.|+-||+|++.-+
T Consensus 341 ~k~~Gk~r~eGK~YivqDGDIi~f~fn 367 (368)
T TIGR00092 341 AKKGGLMRLEGKYYVVDDGDVLFFAFN 367 (368)
T ss_pred HHhcCchhhcCCeEEeeCCeEEEEecC
Confidence 566789999999999999999998754
No 266
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=26.01 E-value=1.2e+02 Score=22.60 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=16.3
Q ss_pred EEEEccCCcEEEeCCCCceeEEeCC
Q 025000 218 SWYPVQAGDVLWMAPFVPQWYAALG 242 (259)
Q Consensus 218 ~~~~v~~GD~i~~~~~~~H~~~n~G 242 (259)
...+.++||++..|+...|+....-
T Consensus 66 ~~~~p~~G~lvlFPs~l~H~v~p~~ 90 (101)
T PF13759_consen 66 YIVEPEEGDLVLFPSWLWHGVPPNN 90 (101)
T ss_dssp EEE---TTEEEEEETTSEEEE----
T ss_pred EEeCCCCCEEEEeCCCCEEeccCcC
Confidence 3578899999999999999987553
No 267
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.17 E-value=90 Score=32.38 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=38.3
Q ss_pred cCCCcCCCCCCCceEEEEEEECEEEEEEcCC-----cEEEEeCCcEEE---------eCCCCcEEEEeCCeEEEE
Q 025000 71 QENARSALPPHDVERFIFVVQGSAMLTNASG-----VSSKLMVDSYTY---------LPPNFAHSLRAEGSATLV 131 (259)
Q Consensus 71 ~Pg~~~~~h~~~~Eef~yVl~G~l~v~v~~g-----e~~~L~~Gd~i~---------~p~~~~H~~~N~~~a~~l 131 (259)
.||.-.-......++++||..|.+++.- .+ ..-.|++||++= .|+ .-++|..+.++++
T Consensus 448 ~pge~iireGd~v~~myFI~rG~le~~~-~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~--t~TVralt~~el~ 519 (727)
T KOG0498|consen 448 TPGEYIIREGDPVTDMYFIVRGSLESIT-TDGGGFFVVAILGPGDFFGEELLTWCLDLPQ--TRTVRALTYCELF 519 (727)
T ss_pred CCCCeEEecCCccceeEEEEeeeEEEEE-ccCCceEEEEEecCCCccchHHHHHHhcCCC--CceeehhhhhhHH
Confidence 3443333334678999999999998876 33 346999999985 665 5555554444433
No 268
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.57 E-value=95 Score=32.22 Aligned_cols=47 Identities=17% Similarity=0.262 Sum_probs=37.4
Q ss_pred EEEEEecCCcccCcceeeccceEEEEEEceEEEEeCC-----EEEEccCCcEE
Q 025000 181 IHIMDFQPGDFLNVKEVHYNQHGLLLLEGQGIYRLGD-----SWYPVQAGDVL 228 (259)
Q Consensus 181 ~~~~t~~PG~~~~~~~~H~~eh~~~il~G~g~~~~~g-----~~~~v~~GD~i 228 (259)
+.--.+.||..+ .++-..-++-|||.+|.....-.+ ....+++||++
T Consensus 442 lk~~~f~pge~i-ireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 442 LKPEYFTPGEYI-IREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred hhhhccCCCCeE-EecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 445567799987 356677778999999999887776 78899999994
No 269
>COG2013 Uncharacterized conserved protein [Function unknown]
Probab=24.50 E-value=4.9e+02 Score=22.92 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=27.6
Q ss_pred EEEEceEEEEeCC----EEEEccCCcEEEeCCCCceeEE
Q 025000 205 LLLEGQGIYRLGD----SWYPVQAGDVLWMAPFVPQWYA 239 (259)
Q Consensus 205 ~il~G~g~~~~~g----~~~~v~~GD~i~~~~~~~H~~~ 239 (259)
.-|+|+|.+.+.. .+..+.+||-+.+.+++-=++.
T Consensus 135 ~kl~G~G~v~l~s~G~~~~~~l~~ge~~~VD~~~~VA~~ 173 (227)
T COG2013 135 LKLEGTGTVFLSSYGDPVEVELDPGETVTVDPGHVVAFS 173 (227)
T ss_pred EEEEeeeEEEEECCCCeEEEEcCCCceEEEcCCcEEEEc
Confidence 3489999999886 7788888988888888765554
No 270
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=23.90 E-value=48 Score=31.40 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=36.5
Q ss_pred EEEEEEecCCcccC----cceeeccceEEE-EE--------------Ece--EEEEeCCEEEEccCCcEEEeCCC
Q 025000 180 NIHIMDFQPGDFLN----VKEVHYNQHGLL-LL--------------EGQ--GIYRLGDSWYPVQAGDVLWMAPF 233 (259)
Q Consensus 180 ~~~~~t~~PG~~~~----~~~~H~~eh~~~-il--------------~G~--g~~~~~g~~~~v~~GD~i~~~~~ 233 (259)
.+|-.+++.|...+ ..|+ ..+.++. -- +.+ |.+++.|+.|.|+-||+|.+.-+
T Consensus 290 evrawti~~GstA~~aAg~IHs-D~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~fn 363 (364)
T PRK09601 290 EVRAWTIKKGTTAPQAAGVIHT-DFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRFN 363 (364)
T ss_pred eEEEEEeCCCCchHHHhhcchh-hHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEcC
Confidence 45778888887752 2333 3333333 22 355 99999999999999999998654
No 271
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=23.46 E-value=58 Score=23.69 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=16.1
Q ss_pred EEEEEEcCCcEEEEeCCcEEE
Q 025000 93 SAMLTNASGVSSKLMVDSYTY 113 (259)
Q Consensus 93 ~l~v~v~~ge~~~L~~Gd~i~ 113 (259)
.+++++ +|+++...+|++|.
T Consensus 3 ~v~i~i-dG~~v~~~~G~til 22 (82)
T PF13510_consen 3 MVTITI-DGKPVEVPPGETIL 22 (82)
T ss_dssp EEEEEE-TTEEEEEEET-BHH
T ss_pred EEEEEE-CCEEEEEcCCCHHH
Confidence 478899 99999999998864
No 272
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=22.65 E-value=78 Score=28.36 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=26.4
Q ss_pred EEEccCCcEEEeCCCCceeEE-eCCC--ccEEEEEEeec
Q 025000 219 WYPVQAGDVLWMAPFVPQWYA-ALGK--TRTRYLLYKDV 254 (259)
Q Consensus 219 ~~~v~~GD~i~~~~~~~H~~~-n~G~--e~~~fi~~k~~ 254 (259)
+.+++|||++|+.+...|+-. |+++ -..-+|.|.++
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~ 250 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSV 250 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecC
Confidence 567899999999999999865 4444 34556666544
No 273
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=22.60 E-value=73 Score=21.40 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=13.8
Q ss_pred EEEEeCCEE-----EEccCCcEEEe
Q 025000 211 GIYRLGDSW-----YPVQAGDVLWM 230 (259)
Q Consensus 211 g~~~~~g~~-----~~v~~GD~i~~ 230 (259)
|.+.+||+. +.|++||.|-+
T Consensus 34 G~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEccCCCCCCCCCCEEEe
Confidence 455667764 47888998865
No 274
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=21.53 E-value=92 Score=25.06 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=8.8
Q ss_pred ceEEEEEEECEEEEEE
Q 025000 83 VERFIFVVQGSAMLTN 98 (259)
Q Consensus 83 ~Eef~yVl~G~l~v~v 98 (259)
.--+-|||+|+=.+.+
T Consensus 69 YiDIq~~l~G~E~i~~ 84 (142)
T TIGR00022 69 YLDIQLLLRGEENIEV 84 (142)
T ss_pred eEEEEEeecceEEEEE
Confidence 4445566666655544
No 275
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=21.19 E-value=1.4e+02 Score=22.93 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=18.5
Q ss_pred EEEEEcCCcEEEEeCCcEEEeC
Q 025000 94 AMLTNASGVSSKLMVDSYTYLP 115 (259)
Q Consensus 94 l~v~v~~ge~~~L~~Gd~i~~p 115 (259)
+.+.+ +|+-+.+++||.+.++
T Consensus 3 AIi~~-gGkQykV~~Gd~i~v~ 23 (103)
T PRK05573 3 AIIKT-GGKQYKVEEGDVIKVE 23 (103)
T ss_pred EEEEE-CCEEEEEeCCCEEEEc
Confidence 35677 8999999999999998
No 276
>PHA02664 hypothetical protein; Provisional
Probab=20.91 E-value=2.1e+02 Score=26.96 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=33.8
Q ss_pred ceEEEEEEECEEEEEE---cCCc------------EEEEeCCcEEEeCCCCcEEEEe-CCeEEEEE--EEEeccccCC
Q 025000 83 VERFIFVVQGSAMLTN---ASGV------------SSKLMVDSYTYLPPNFAHSLRA-EGSATLVV--FERRYASLEN 142 (259)
Q Consensus 83 ~Eef~yVl~G~l~v~v---~~ge------------~~~L~~Gd~i~~p~~~~H~~~N-~~~a~~l~--v~~~y~p~~g 142 (259)
.=....+|+|++.+.. -.|+ .+.-++-|++-+ .++|++|| ..++-+.. ..+.++|++.
T Consensus 101 vftvwvclsgevriyaeccqaghgfvlcrqmaagymfvteptdsvtv--svphr~rnsrspvwlaavfatrhfeplpp 176 (534)
T PHA02664 101 VFTVWVCLSGEVRIYAECCQAGHGFVLCRQMAAGYMFVTEPTDSVTV--SVPHRLRNSRSPVWLAAVFATRHFEPLPP 176 (534)
T ss_pred EEEEEEEccceEEeehhhhhcCCceEEEeccccceEEEecCCcceEE--ecchhhccCCCcceeeeeehhccccCCCC
Confidence 3455678999998753 1233 233344455544 38999999 45554433 2455677663
No 277
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=20.88 E-value=38 Score=21.55 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=12.1
Q ss_pred EEEEeCCEEEE-----ccCCcEE
Q 025000 211 GIYRLGDSWYP-----VQAGDVL 228 (259)
Q Consensus 211 g~~~~~g~~~~-----v~~GD~i 228 (259)
|.+.+||+... |++||.|
T Consensus 26 g~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 26 GRVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TTEEETTEEESSTTSBESTTEEE
T ss_pred CEEEECCEEEcCCCCCCCCcCCC
Confidence 45667776655 7777765
No 278
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=20.75 E-value=72 Score=30.12 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=0.0
Q ss_pred EEecCCCcCCCCCCCceEEEEEEECEEEEEE-cCCcEEEEeCCcEE
Q 025000 68 ANMQENARSALPPHDVERFIFVVQGSAMLTN-ASGVSSKLMVDSYT 112 (259)
Q Consensus 68 ~~l~Pg~~~~~h~~~~Eef~yVl~G~l~v~v-~~ge~~~L~~Gd~i 112 (259)
....+|.....+...+|+|+++.+|++.+.- .+|-...+++||++
T Consensus 266 k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyf 311 (368)
T KOG1113|consen 266 KSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYF 311 (368)
T ss_pred eeccCCceEEeccCCcceEEEecccccchhhccCCeEEEechhhhc
No 279
>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=20.72 E-value=3.4e+02 Score=21.58 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=6.1
Q ss_pred EEECCCCcee
Q 025000 31 ALITPESHVL 40 (259)
Q Consensus 31 avi~pe~~v~ 40 (259)
-+++|++.+.
T Consensus 7 ~IvtP~~~~~ 16 (132)
T PRK13450 7 TILTPEKNFY 16 (132)
T ss_pred EEEcCCceEE
Confidence 4567776554
No 280
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=20.46 E-value=1.5e+02 Score=21.98 Aligned_cols=29 Identities=7% Similarity=0.136 Sum_probs=18.5
Q ss_pred EEEeCCcEEEeCCCCcEEEE-e-CCeEEEEE
Q 025000 104 SKLMVDSYTYLPPNFAHSLR-A-EGSATLVV 132 (259)
Q Consensus 104 ~~L~~Gd~i~~p~~~~H~~~-N-~~~a~~l~ 132 (259)
...++||.+.||+...|... | ...-|+.+
T Consensus 68 ~~p~~G~lvlFPs~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 68 VEPEEGDLVLFPSWLWHGVPPNNSDEERISI 98 (101)
T ss_dssp E---TTEEEEEETTSEEEE----SSS-EEEE
T ss_pred eCCCCCEEEEeCCCCEEeccCcCCCCCEEEE
Confidence 47789999999999999987 4 33456654
Done!