Your job contains 1 sequence.
>025001
MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVR
LRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMG
RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF
SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY
IELFPSSHEEMDEALSRGR
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025001
(259 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156897 - symbol:AT5G66010 species:3702 "Arabi... 603 9.3e-59 1
UNIPROTKB|F1Q0B7 - symbol:GRSF1 "Uncharacterized protein"... 191 4.2e-30 2
UNIPROTKB|F5H5I6 - symbol:GRSF1 "G-rich sequence factor 1... 191 3.1e-29 2
UNIPROTKB|H0Y8R1 - symbol:GRSF1 "G-rich sequence factor 1... 191 7.1e-29 2
UNIPROTKB|H0YAK1 - symbol:GRSF1 "G-rich sequence factor 1... 191 1.1e-28 2
UNIPROTKB|Q12849 - symbol:GRSF1 "G-rich sequence factor 1... 191 1.4e-28 2
UNIPROTKB|A6QPB2 - symbol:GRSF1 "Uncharacterized protein"... 188 1.1e-27 2
UNIPROTKB|F1RUP2 - symbol:GRSF1 "Uncharacterized protein"... 189 1.1e-27 2
UNIPROTKB|F1MZF0 - symbol:GRSF1 "Uncharacterized protein"... 188 1.9e-27 2
UNIPROTKB|F1LRK4 - symbol:Grsf1 "Protein Grsf1" species:1... 188 4.4e-27 2
MGI|MGI:106479 - symbol:Grsf1 "G-rich RNA sequence bindin... 189 9.9e-27 2
UNIPROTKB|F1LMB8 - symbol:Grsf1 "Protein Grsf1" species:1... 188 1.9e-26 2
ZFIN|ZDB-GENE-060825-196 - symbol:grsf1 "G-rich RNA seque... 287 2.9e-25 1
UNIPROTKB|F1PA85 - symbol:ESRP2 "Uncharacterized protein"... 283 3.4e-25 2
UNIPROTKB|I3LLW0 - symbol:RBM12 "Uncharacterized protein"... 281 3.8e-25 2
UNIPROTKB|J9NZV3 - symbol:RBM12 "Uncharacterized protein"... 277 7.9e-25 2
UNIPROTKB|F1P982 - symbol:RBM12 "Uncharacterized protein"... 277 9.7e-25 2
RGD|1310855 - symbol:Esrp2 "epithelial splicing regulator... 290 1.3e-24 1
UNIPROTKB|G3V8M2 - symbol:Esrp2 "Epithelial-splicing regu... 290 1.3e-24 1
UNIPROTKB|F1MND5 - symbol:RBM12 "Uncharacterized protein"... 275 1.6e-24 2
UNIPROTKB|Q5F3D2 - symbol:HNRNPH3 "Uncharacterized protei... 189 2.0e-24 2
UNIPROTKB|A5D9B4 - symbol:HNRPH2 "Heterogeneous nuclear r... 185 2.5e-24 2
UNIPROTKB|Q3SZF3 - symbol:HNRNPH2 "Heterogeneous nuclear ... 185 2.5e-24 2
UNIPROTKB|E2RJH5 - symbol:HNRNPH2 "Uncharacterized protei... 185 2.5e-24 2
MGI|MGI:1201779 - symbol:Hnrnph2 "heterogeneous nuclear r... 180 2.5e-24 2
RGD|1549784 - symbol:Hnrnph2 "heterogeneous nuclear ribon... 180 2.5e-24 2
MGI|MGI:1924661 - symbol:Esrp2 "epithelial splicing regul... 284 5.9e-24 1
MGI|MGI:1922960 - symbol:Rbm12 "RNA binding motif protein... 286 6.6e-24 1
ZFIN|ZDB-GENE-081022-16 - symbol:rbm12 "RNA binding motif... 281 1.8e-23 1
UNIPROTKB|Q9H6T0 - symbol:ESRP2 "Epithelial splicing regu... 279 2.1e-23 1
UNIPROTKB|D4A116 - symbol:Rbm12 "Protein Rbm12" species:1... 280 2.9e-23 1
RGD|1594333 - symbol:Rbm12 "RNA binding motif protein 12"... 280 3.1e-23 1
UNIPROTKB|F1PQY5 - symbol:ESRP1 "Uncharacterized protein"... 272 5.1e-23 1
UNIPROTKB|F1MSN9 - symbol:ESRP2 "Uncharacterized protein"... 275 5.5e-23 1
UNIPROTKB|F1MVN3 - symbol:ESRP1 "Uncharacterized protein"... 273 8.0e-23 1
UNIPROTKB|F1PSN8 - symbol:ESRP1 "Uncharacterized protein"... 272 8.8e-23 1
UNIPROTKB|F1RY52 - symbol:ESRP1 "Uncharacterized protein"... 273 8.9e-23 1
UNIPROTKB|Q9NTZ6 - symbol:RBM12 "RNA-binding protein 12" ... 275 8.9e-23 1
UNIPROTKB|H0YBR2 - symbol:ESRP1 "Epithelial-splicing regu... 269 9.5e-23 1
UNIPROTKB|H0YBB3 - symbol:ESRP1 "Epithelial-splicing regu... 269 1.1e-22 1
UNIPROTKB|F1NNR6 - symbol:LOC100858337 "Uncharacterized p... 260 1.6e-22 2
MGI|MGI:1917326 - symbol:Esrp1 "epithelial splicing regul... 270 1.7e-22 1
UNIPROTKB|Q5ZLR4 - symbol:ESRP2 "Epithelial splicing regu... 270 1.8e-22 1
RGD|1560481 - symbol:Esrp1 "epithelial splicing regulator... 269 2.2e-22 1
UNIPROTKB|F1LP81 - symbol:Esrp1 "Epithelial-splicing regu... 269 2.2e-22 1
UNIPROTKB|Q6NXG1 - symbol:ESRP1 "Epithelial splicing regu... 269 2.2e-22 1
WB|WBGene00006367 - symbol:sym-2 species:6239 "Caenorhabd... 267 2.9e-22 1
UNIPROTKB|I3L687 - symbol:HNRNPH2 "Uncharacterized protei... 185 3.5e-22 2
UNIPROTKB|F1NWS6 - symbol:GRSF1 "Uncharacterized protein"... 181 6.2e-22 2
UNIPROTKB|F1P509 - symbol:ESRP1 "Uncharacterized protein"... 261 8.2e-22 1
UNIPROTKB|Q6DEZ7 - symbol:esrp1 "Epithelial splicing regu... 263 9.9e-22 1
UNIPROTKB|Q7ZY29 - symbol:esrp1 "Epithelial splicing regu... 263 9.9e-22 1
ZFIN|ZDB-GENE-030131-9824 - symbol:esrp2 "epithelial spli... 261 1.9e-21 1
ZFIN|ZDB-GENE-070112-1732 - symbol:esrp1 "epithelial spli... 259 2.9e-21 1
WB|WBGene00020936 - symbol:hrpf-1 species:6239 "Caenorhab... 252 9.1e-21 1
FB|FBgn0023441 - symbol:fus "fusilli" species:7227 "Droso... 256 1.0e-20 1
UNIPROTKB|B4DHY1 - symbol:HNRNPH3 "cDNA FLJ57726, highly ... 179 2.2e-20 2
ZFIN|ZDB-GENE-060421-3878 - symbol:zgc:136953 "zgc:136953... 234 2.8e-19 1
FB|FBgn0259139 - symbol:glo "glorund" species:7227 "Droso... 194 3.8e-19 2
UNIPROTKB|E5RGV0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 183 8.1e-19 2
UNIPROTKB|H0YB39 - symbol:HNRNPH1 "Heterogeneous nuclear ... 174 2.9e-18 2
ZFIN|ZDB-GENE-040426-1856 - symbol:hnrnph1 "heterogeneous... 210 1.5e-16 1
ZFIN|ZDB-GENE-030131-275 - symbol:hnrnph1l "heterogeneous... 208 2.5e-16 1
UNIPROTKB|E2RB90 - symbol:HNRNPF "Uncharacterized protein... 208 2.7e-16 1
UNIPROTKB|F1RG16 - symbol:HNRNPF "Uncharacterized protein... 208 2.7e-16 1
UNIPROTKB|P52597 - symbol:HNRNPF "Heterogeneous nuclear r... 208 2.7e-16 1
UNIPROTKB|Q60HC3 - symbol:HNRNPF "Heterogeneous nuclear r... 208 2.7e-16 1
UNIPROTKB|Q5E9J1 - symbol:HNRNPF "Heterogeneous nuclear r... 207 3.4e-16 1
MGI|MGI:2138741 - symbol:Hnrnpf "heterogeneous nuclear ri... 206 4.4e-16 1
RGD|620366 - symbol:Hnrnpf "heterogeneous nuclear ribonuc... 206 4.4e-16 1
UNIPROTKB|G3N1Y9 - symbol:G3N1Y9 "Uncharacterized protein... 156 7.9e-16 2
UNIPROTKB|F1RKD1 - symbol:RBM19 "Uncharacterized protein"... 205 2.9e-15 1
UNIPROTKB|D6RBM0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 192 3.3e-15 1
UNIPROTKB|I3LFQ0 - symbol:HNRNPH3 "Uncharacterized protei... 192 3.3e-15 1
UNIPROTKB|E1BB17 - symbol:HNRNPH3 "Uncharacterized protei... 192 8.5e-15 1
UNIPROTKB|F1P8D3 - symbol:HNRNPH3 "Uncharacterized protei... 192 8.5e-15 1
UNIPROTKB|P31942 - symbol:HNRNPH3 "Heterogeneous nuclear ... 192 8.5e-15 1
RGD|1310019 - symbol:Hnrnph3 "heterogeneous nuclear ribon... 192 8.5e-15 1
UNIPROTKB|F1NBV8 - symbol:HNRNPH1 "Uncharacterized protei... 196 8.5e-15 1
UNIPROTKB|F1NJJ4 - symbol:HNRNPH1 "Uncharacterized protei... 196 8.8e-15 1
UNIPROTKB|E7EN40 - symbol:HNRNPH1 "Heterogeneous nuclear ... 155 9.5e-15 2
UNIPROTKB|F1NJJ5 - symbol:HNRNPH1 "Uncharacterized protei... 196 9.5e-15 1
UNIPROTKB|F1NEG6 - symbol:HNRNPH1 "Uncharacterized protei... 196 9.6e-15 1
UNIPROTKB|P55795 - symbol:HNRNPH2 "Heterogeneous nuclear ... 193 1.5e-14 1
UNIPROTKB|I3L816 - symbol:HNRNPH1 "Uncharacterized protei... 192 1.6e-14 1
UNIPROTKB|E9PCY7 - symbol:HNRNPH1 "Heterogeneous nuclear ... 192 1.7e-14 1
UNIPROTKB|E2R8D6 - symbol:E2R8D6 "Uncharacterized protein... 192 1.8e-14 1
UNIPROTKB|P31943 - symbol:HNRNPH1 "Heterogeneous nuclear ... 192 1.9e-14 1
UNIPROTKB|F2Z5H9 - symbol:HNRNPH1 "Uncharacterized protei... 192 1.9e-14 1
MGI|MGI:1891925 - symbol:Hnrnph1 "heterogeneous nuclear r... 192 1.9e-14 1
UNIPROTKB|G3V9Q3 - symbol:Hnrph1 "Heterogeneous nuclear r... 192 1.9e-14 1
UNIPROTKB|E1BF20 - symbol:HNRNPH1 "Uncharacterized protei... 192 2.1e-14 1
UNIPROTKB|G8JLB6 - symbol:HNRNPH1 "Heterogeneous nuclear ... 192 2.1e-14 1
MGI|MGI:1921361 - symbol:Rbm19 "RNA binding motif protein... 196 2.6e-14 1
UNIPROTKB|D6RIU0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
UNIPROTKB|D6RFM3 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
UNIPROTKB|D6R9T0 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
UNIPROTKB|D6RAM1 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
UNIPROTKB|D6RDU3 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
UNIPROTKB|D6RIH9 - symbol:HNRNPH1 "Heterogeneous nuclear ... 182 3.8e-14 1
WARNING: Descriptions of 56 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2156897 [details] [associations]
symbol:AT5G66010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K12898
IPI:IPI00541506 RefSeq:NP_201402.3 UniGene:At.28214
ProteinModelPortal:F4JZ11 SMR:F4JZ11 EnsemblPlants:AT5G66010.1
GeneID:836731 KEGG:ath:AT5G66010 OMA:YEVGSKR Uniprot:F4JZ11
Length = 255
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 125/255 (49%), Positives = 169/255 (66%)
Query: 10 GADGREMGAKRQRLIDQGPSF-YGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDC 68
G+ G E+G+KRQR++ P GT P+S F PP +GY FPVVRLRGLPF+C
Sbjct: 10 GSGGYEVGSKRQRMMQSNPYLAVGTGPTS-F----PP-FGYAGG---FPVVRLRGLPFNC 60
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ EFF GL+IVDVL V KN KF+GEAF V P+QV+ ALQR+R NMGRRYVEVFR
Sbjct: 61 ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 120
Query: 129 SKRQEYYKAIANEVS----DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGK 184
+Q+YY A+A E +VR P RAK E K+ +T +L++RGLP+S K
Sbjct: 121 CSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNK 179
Query: 185 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
I++FF + + + + + DG+ TGEAFVEF E+++ AMAKD+M++GSRY+ELF
Sbjct: 180 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 239
Query: 245 PSSHEEMDEALSRGR 259
P++ EE A +R R
Sbjct: 240 PTTREEARRAEARSR 254
>UNIPROTKB|F1Q0B7 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016331 "morphogenesis of embryonic
epithelium" evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 EMBL:AAEX03009136
Ensembl:ENSCAFT00000004672 OMA:GESEMAN Uniprot:F1Q0B7
Length = 281
Score = 191 (72.3 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 52 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 111
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 112 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSP 146
Score = 173 (66.0 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 39/95 (41%), Positives = 56/95 (58%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAF 216
KS V+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+
Sbjct: 38 KSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAY 95
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 96 VQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 130
Score = 157 (60.3 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 40/89 (44%), Positives = 53/89 (59%)
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 218
D G S++H + +RGLPF A DI++FF + ITM +S+G+ TGEA V
Sbjct: 194 DFGATSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSNGKATGEADVH 247
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSS 247
F ED+ AAM KDR + RYIELF +S
Sbjct: 248 FDTHEDAVAAMLKDRSHVHHRYIELFLNS 276
Score = 59 (25.8 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQE 133
V AL+++R MG+RYVEV+ ++
Sbjct: 7 VQKALEKHRMYMGQRYVEVYEINNED 32
>UNIPROTKB|F5H5I6 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
IPI:IPI00979483 ProteinModelPortal:F5H5I6 SMR:F5H5I6 PRIDE:F5H5I6
Ensembl:ENST00000545193 UCSC:uc011caz.1 ArrayExpress:F5H5I6
Bgee:F5H5I6 Uniprot:F5H5I6
Length = 362
Score = 191 (72.3 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
Identities = 42/103 (40%), Positives = 61/103 (59%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAK 158
R+ +G RY+E+F S+R E + V +G S P AK
Sbjct: 193 REEIGNRYIEIFPSRRNE----VRTHVGSYKG-KKIASFPTAK 230
Score = 187 (70.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 65/204 (31%), Positives = 99/204 (48%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
++R +GLP+ CT DV FF I +N GE G + F L R+ +
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRI-------RN----GEN----G----IHFLLNRDGK 73
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHD--------EGKDS-AV 168
G +E+ Q+ KA+ E + G + + + D + K S V
Sbjct: 74 RRGDALIEM--ESEQDVQKAL--EKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV 129
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKA 227
+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E +
Sbjct: 130 NDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQ 187
Query: 228 AMAKDRMTLGSRYIELFPSSHEEM 251
A+ K R +G+RYIE+FPS E+
Sbjct: 188 ALLKHREEIGNRYIEIFPSRRNEV 211
Score = 168 (64.2 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 29/83 (34%), Positives = 55/83 (66%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
Score = 158 (60.7 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
Identities = 42/96 (43%), Positives = 55/96 (57%)
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 211
+P A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 270 LPEAA--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 321
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 322 TGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 357
>UNIPROTKB|H0Y8R1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
PRIDE:H0Y8R1 Ensembl:ENST00000514161 Bgee:H0Y8R1 Uniprot:H0Y8R1
Length = 417
Score = 191 (72.3 bits), Expect = 7.1e-29, Sum P(2) = 7.1e-29
Identities = 42/103 (40%), Positives = 61/103 (59%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 188 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 247
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAK 158
R+ +G RY+E+F S+R E + V +G S P AK
Sbjct: 248 REEIGNRYIEIFPSRRNE----VRTHVGSYKG-KKIASFPTAK 285
Score = 187 (70.9 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 65/204 (31%), Positives = 99/204 (48%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
++R +GLP+ CT DV FF I +N GE G + F L R+ +
Sbjct: 88 LIRAQGLPWSCTMEDVLNFFSDCRI-------RN----GEN----G----IHFLLNRDGK 128
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHD--------EGKDS-AV 168
G +E+ Q+ KA+ E + G + + + D + K S V
Sbjct: 129 RRGDALIEM--ESEQDVQKAL--EKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV 184
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKA 227
+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E +
Sbjct: 185 NDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQ 242
Query: 228 AMAKDRMTLGSRYIELFPSSHEEM 251
A+ K R +G+RYIE+FPS E+
Sbjct: 243 ALLKHREEIGNRYIEIFPSRRNEV 266
Score = 168 (64.2 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 29/83 (34%), Positives = 55/83 (66%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 88 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 147
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 148 EKHRMYMGQRYVEVYEINNEDVD 170
Score = 158 (60.7 bits), Expect = 7.1e-29, Sum P(2) = 7.1e-29
Identities = 42/96 (43%), Positives = 55/96 (57%)
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 211
+P A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 325 LPEAA--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 376
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 377 TGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 412
>UNIPROTKB|H0YAK1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC021989 HGNC:HGNC:4610 ChiTaRS:GRSF1
OMA:LSFFSDC PRIDE:H0YAK1 Ensembl:ENST00000499044 Bgee:H0YAK1
Uniprot:H0YAK1
Length = 453
Score = 191 (72.3 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 42/103 (40%), Positives = 61/103 (59%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 224 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 283
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAK 158
R+ +G RY+E+F S+R E + V +G S P AK
Sbjct: 284 REEIGNRYIEIFPSRRNE----VRTHVGSYKG-KKIASFPTAK 321
Score = 188 (71.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 70/237 (29%), Positives = 110/237 (46%)
Query: 32 GTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIVD 84
G+ ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 91 GSESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRI-- 148
Query: 85 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 144
+N GE G + F L R+ + G +E+ Q+ KA+ E
Sbjct: 149 -----RN----GEN----G----IHFLLNRDGKRRGDALIEM--ESEQDVQKAL--EKHR 187
Query: 145 VRGGSPHRSIPRAKSHD--------EGKDS-AVHTGILRLRGLPFSAGKDDIMDFFKDFV 195
+ G + + + D + K S V+ G++RLRGLP+S + DI+DFF
Sbjct: 188 MYMGQRYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLN 247
Query: 196 LSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ + I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 248 IVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 302
Score = 168 (64.2 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 29/83 (34%), Positives = 55/83 (66%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 124 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 183
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 184 EKHRMYMGQRYVEVYEINNEDVD 206
Score = 158 (60.7 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 42/96 (43%), Positives = 55/96 (57%)
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 211
+P A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 361 LPEAA--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 412
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 413 TGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 448
>UNIPROTKB|Q12849 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0009952
"anterior/posterior pattern specification" evidence=IEA]
[GO:0016331 "morphogenesis of embryonic epithelium" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=TAS] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0000166 GO:GO:0009952
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378 EMBL:CH471057
GO:GO:0016331 EMBL:U07231 EMBL:AK056891 EMBL:AK090755 EMBL:AK094806
EMBL:AK095799 EMBL:AK097055 EMBL:AK127161 EMBL:AC021989
EMBL:BC040485 IPI:IPI00478657 IPI:IPI00914953 PIR:S48081
RefSeq:NP_001091947.1 RefSeq:NP_002083.3 UniGene:Hs.309763 PDB:2LMI
PDBsum:2LMI ProteinModelPortal:Q12849 SMR:Q12849 IntAct:Q12849
STRING:Q12849 PhosphoSite:Q12849 DMDM:215274142 PaxDb:Q12849
PRIDE:Q12849 Ensembl:ENST00000254799 Ensembl:ENST00000439371
Ensembl:ENST00000502323 GeneID:2926 KEGG:hsa:2926 UCSC:uc003hfs.2
CTD:2926 GeneCards:GC04M071681 HGNC:HGNC:4610 HPA:HPA036985
MIM:604851 neXtProt:NX_Q12849 PharmGKB:PA29003 eggNOG:NOG319259
HOGENOM:HOG000220896 HOVERGEN:HBG055557 InParanoid:Q12849
OrthoDB:EOG4XPQGW ChiTaRS:GRSF1 GenomeRNAi:2926 NextBio:11601
ArrayExpress:Q12849 Bgee:Q12849 CleanEx:HS_GRSF1
Genevestigator:Q12849 GermOnline:ENSG00000132463 Uniprot:Q12849
Length = 480
Score = 191 (72.3 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 42/103 (40%), Positives = 61/103 (59%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAK 158
R+ +G RY+E+F S+R E + V +G S P AK
Sbjct: 311 REEIGNRYIEIFPSRRNE----VRTHVGSYKG-KKIASFPTAK 348
Score = 187 (70.9 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 65/204 (31%), Positives = 99/204 (48%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
++R +GLP+ CT DV FF I +N GE G + F L R+ +
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRI-------RN----GEN----G----IHFLLNRDGK 191
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHD--------EGKDS-AV 168
G +E+ Q+ KA+ E + G + + + D + K S V
Sbjct: 192 RRGDALIEM--ESEQDVQKAL--EKHRMYMGQRYVEVYEINNEDVDALMKSLQVKSSPVV 247
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKA 227
+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E +
Sbjct: 248 NDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQ 305
Query: 228 AMAKDRMTLGSRYIELFPSSHEEM 251
A+ K R +G+RYIE+FPS E+
Sbjct: 306 ALLKHREEIGNRYIEIFPSRRNEV 329
Score = 168 (64.2 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 29/83 (34%), Positives = 55/83 (66%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 211 EKHRMYMGQRYVEVYEINNEDVD 233
Score = 158 (60.7 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 42/96 (43%), Positives = 55/96 (57%)
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 211
+P A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 388 LPEAA--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 439
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 440 TGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475
>UNIPROTKB|A6QPB2 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000220896
HOVERGEN:HBG055557 OrthoDB:EOG4XPQGW GeneTree:ENSGT00620000087736
EMBL:DAAA02018025 EMBL:DAAA02018026 EMBL:BC149233 IPI:IPI00705255
UniGene:Bt.53639 SMR:A6QPB2 Ensembl:ENSBTAT00000039551
Uniprot:A6QPB2
Length = 362
Score = 188 (71.2 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 38/95 (40%), Positives = 56/95 (58%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSP 227
Score = 185 (70.2 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 63/197 (31%), Positives = 97/197 (49%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
++R +GLP+ CT DV FF I + +H G+ G L ++ +++
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKR---RGDAL-IEMESEQDV 88
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RSIPRAKSHDEGKDSAVHTGILRL 175
Q ++ + E Y+ I NE D S H +S P V+ G++RL
Sbjct: 89 QKALEKHRMYMGQRYVEVYE-INNEDVDALMKSLHVKSAPM-----------VNDGVVRL 136
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRM 234
RGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K R
Sbjct: 137 RGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHRE 194
Query: 235 TLGSRYIELFPSSHEEM 251
+G+RYIE+FPS E+
Sbjct: 195 EIGNRYIEIFPSRRNEV 211
Score = 173 (66.0 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 150 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNS 207
P +P +K +E D V+ ++R +GLP+S +D++ FF D + E+ IH +N
Sbjct: 15 PEYELPPSKLGEEVDD--VY--LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNR 70
Query: 208 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 252
DG+ G+A +E + +D + A+ K RM +G RY+E++ ++E++D
Sbjct: 71 DGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVD 115
Score = 158 (60.7 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 43/96 (44%), Positives = 55/96 (57%)
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 211
IP A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 270 IPEAV--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 321
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 322 TGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
>UNIPROTKB|F1RUP2 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016331 "morphogenesis of embryonic epithelium"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 OMA:LSFFSDC
EMBL:FP325194 RefSeq:XP_003129120.1 UniGene:Ssc.12808
Ensembl:ENSSSCT00000009793 GeneID:100516986 KEGG:ssc:100516986
Uniprot:F1RUP2
Length = 479
Score = 189 (71.6 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 38/95 (40%), Positives = 56/95 (58%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSP 344
Score = 183 (69.5 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 62/197 (31%), Positives = 97/197 (49%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
++R +GLP+ CT DV FF I + +H G+ G L ++ +++
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKR---RGDAL-IEMESEQDV 205
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RSIPRAKSHDEGKDSAVHTGILRL 175
Q ++ + E Y+ I NE D + H +S P V+ G++RL
Sbjct: 206 QKALEKHRMYMGQRYVEVYE-INNEDVDALMKNLHVKSTP-----------VVNDGVVRL 253
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRM 234
RGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K R
Sbjct: 254 RGLPYSCNEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHRE 311
Query: 235 TLGSRYIELFPSSHEEM 251
+G+RYIE+FPS E+
Sbjct: 312 EIGNRYIEIFPSRRNEV 328
Score = 173 (66.0 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 150 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNS 207
P +P +K +E D V+ ++R +GLP+S +D++ FF D + E+ IH +N
Sbjct: 132 PEYELPPSKLGEEVDD--VY--LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNR 187
Query: 208 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 252
DG+ G+A +E + +D + A+ K RM +G RY+E++ ++E++D
Sbjct: 188 DGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVD 232
Score = 157 (60.3 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 40/89 (44%), Positives = 52/89 (58%)
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 218
D G S++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 392 DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 445
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSS 247
F ED+ AAM KDR + RYIELF +S
Sbjct: 446 FETHEDAVAAMLKDRSHVHHRYIELFLNS 474
>UNIPROTKB|F1MZF0 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016331 "morphogenesis of embryonic epithelium"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016331 GeneTree:ENSGT00620000087736 OMA:LSFFSDC
EMBL:DAAA02018025 EMBL:DAAA02018026 IPI:IPI00700446
Ensembl:ENSBTAT00000011313 ArrayExpress:F1MZF0 Uniprot:F1MZF0
Length = 399
Score = 188 (71.2 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 38/95 (40%), Positives = 56/95 (58%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P AL ++
Sbjct: 170 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 229
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 230 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSP 264
Score = 186 (70.5 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 70/236 (29%), Positives = 110/236 (46%)
Query: 27 GPSF-YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFH 78
GP+ Y ++++ + PP Y P ++R +GLP+ CT DV FF
Sbjct: 31 GPARGYSQESKTTYLEDLPPLPEYELPPSKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFS 90
Query: 79 GLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 137
I + +H G+ G L ++ +++ Q ++ + E Y+
Sbjct: 91 DCRIRNGENGIHFLLNRDGKR---RGDAL-IEMESEQDVQKALEKHRMYMGQRYVEVYE- 145
Query: 138 IANEVSDVRGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 196
I NE D S H +S P V+ G++RLRGLP+S + DI+DFF +
Sbjct: 146 INNEDVDALMKSLHVKSAPM-----------VNDGVVRLRGLPYSCNEKDIVDFFAGLNI 194
Query: 197 SEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 195 VD--ITFVMDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEV 248
Score = 173 (66.0 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 150 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNS 207
P +P +K +E D V+ ++R +GLP+S +D++ FF D + E+ IH +N
Sbjct: 52 PEYELPPSKLGEEVDD--VY--LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNR 107
Query: 208 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 252
DG+ G+A +E + +D + A+ K RM +G RY+E++ ++E++D
Sbjct: 108 DGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVD 152
Score = 158 (60.7 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 43/96 (44%), Positives = 55/96 (57%)
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRP 211
IP A D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 307 IPEAV--DFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKA 358
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 359 TGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 394
>UNIPROTKB|F1LRK4 [details] [associations]
symbol:Grsf1 "Protein Grsf1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009952 "anterior/posterior
pattern specification" evidence=IEA] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 GeneTree:ENSGT00620000087736
IPI:IPI00364208 PRIDE:F1LRK4 Ensembl:ENSRNOT00000004551
ArrayExpress:F1LRK4 Uniprot:F1LRK4
Length = 361
Score = 188 (71.2 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 132 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 191
Query: 116 RQNMGRRYVEVFRSKRQE 133
R+ +G RY+E+F S+R E
Sbjct: 192 REEIGNRYIEIFPSRRNE 209
Score = 170 (64.9 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 30/83 (36%), Positives = 55/83 (66%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 32 LIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 91
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 92 EKHRMYMGQRYVEVYEINNEDVD 114
Score = 152 (58.6 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 40/93 (43%), Positives = 54/93 (58%)
Query: 157 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGE 214
A++ D G ++H + +RGLPF A DI++FF + ITM +S G+ TGE
Sbjct: 270 AEAVDFGAVPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGE 323
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A V F ED+ AAM KDR + RYIELF +S
Sbjct: 324 ADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 356
Score = 106 (42.4 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + + F+ +++ K G+A + V AL
Sbjct: 32 LIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 91
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R MG+RYVEV+ ++
Sbjct: 92 EKHRMYMGQRYVEVYEINNED 112
>MGI|MGI:106479 [details] [associations]
symbol:Grsf1 "G-rich RNA sequence binding factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009952
"anterior/posterior pattern specification" evidence=IMP]
[GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106479 GO:GO:0005739 GO:GO:0000166 GO:GO:0009952
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016331 CTD:2926
eggNOG:NOG319259 HOGENOM:HOG000220896 HOVERGEN:HBG055557
OrthoDB:EOG4XPQGW EMBL:AK044889 EMBL:AK045986 EMBL:AK077782
IPI:IPI00453582 RefSeq:NP_848815.2 UniGene:Mm.332474
ProteinModelPortal:Q8C5Q4 SMR:Q8C5Q4 STRING:Q8C5Q4
PhosphoSite:Q8C5Q4 PaxDb:Q8C5Q4 PRIDE:Q8C5Q4 DNASU:231413
Ensembl:ENSMUST00000078945 GeneID:231413 KEGG:mmu:231413
UCSC:uc008yab.1 GeneTree:ENSGT00620000087736 InParanoid:Q8C5Q4
OMA:LSFFSDC NextBio:380544 Bgee:Q8C5Q4 CleanEx:MM_GRSF1
Genevestigator:Q8C5Q4 GermOnline:ENSMUSG00000044221 Uniprot:Q8C5Q4
Length = 479
Score = 189 (71.6 bits), Expect = 9.9e-27, Sum P(2) = 9.9e-27
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSP 344
Score = 185 (70.2 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 70/243 (28%), Positives = 109/243 (44%)
Query: 27 GPSF-YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFH 78
GP+ Y ++++ + PP Y P ++R +GLP+ CT DV FF
Sbjct: 111 GPARGYSQESKTTYLEDLPPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFS 170
Query: 79 GLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
I N G + F L R+ + G +E+ Q+ KA+
Sbjct: 171 DCRI--------RNSENG-----------IHFLLNRDGKRRGDALIEM--ESEQDVQKAL 209
Query: 139 ANEVSDVRGGSPHRSIPRAKSHD--------EGKDSAVHT-GILRLRGLPFSAGKDDIMD 189
E + G + + + D + K S V + G++RLRGLP+S + DI+D
Sbjct: 210 --EKHRMYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVD 267
Query: 190 FFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248
FF + + I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS
Sbjct: 268 FFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRR 325
Query: 249 EEM 251
E+
Sbjct: 326 NEV 328
Score = 174 (66.3 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 36/105 (34%), Positives = 65/105 (61%)
Query: 150 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNS 207
P + +K DE D V+ ++R +GLP+S +D+++FF D + SE+ IH +N
Sbjct: 132 PEYELSPSKLGDEVDD--VY--LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNR 187
Query: 208 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 252
DG+ G+A +E + +D + A+ K RM +G RY+E++ ++E++D
Sbjct: 188 DGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVD 232
Score = 148 (57.2 bits), Expect = 9.9e-27, Sum P(2) = 9.9e-27
Identities = 39/89 (43%), Positives = 51/89 (57%)
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVE 218
D G ++H + +RGLPF A DI++FF + ITM +S G+ TGEA V
Sbjct: 392 DFGTLPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVH 445
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSS 247
F ED+ AAM KDR + RYIELF +S
Sbjct: 446 FDTHEDAVAAMLKDRSHVQHRYIELFLNS 474
>UNIPROTKB|F1LMB8 [details] [associations]
symbol:Grsf1 "Protein Grsf1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 OMA:LSFFSDC IPI:IPI00949228
PRIDE:F1LMB8 Ensembl:ENSRNOT00000065436 ArrayExpress:F1LMB8
Uniprot:F1LMB8
Length = 479
Score = 188 (71.2 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQE 133
R+ +G RY+E+F S+R E
Sbjct: 310 REEIGNRYIEIFPSRRNE 327
Score = 170 (64.9 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/83 (36%), Positives = 55/83 (66%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
Score = 152 (58.6 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 40/93 (43%), Positives = 54/93 (58%)
Query: 157 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGE 214
A++ D G ++H + +RGLPF A DI++FF + ITM +S G+ TGE
Sbjct: 388 AEAVDFGAVPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGE 441
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A V F ED+ AAM KDR + RYIELF +S
Sbjct: 442 ADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 106 (42.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + + F+ +++ K G+A + V AL
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R MG+RYVEV+ ++
Sbjct: 210 EKHRMYMGQRYVEVYEINNED 230
>ZFIN|ZDB-GENE-060825-196 [details] [associations]
symbol:grsf1 "G-rich RNA sequence binding factor 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060825-196 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BX323596 GeneTree:ENSGT00620000087736
IPI:IPI01023901 ProteinModelPortal:F8W4V6
Ensembl:ENSDART00000149868 ArrayExpress:F8W4V6 Bgee:F8W4V6
Uniprot:F8W4V6
Length = 403
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 71/200 (35%), Positives = 111/200 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLP+ CTE D+ FF GLD+V+ + +++ K +G+AF + AL++
Sbjct: 213 VVRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKK 272
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI-PRAKSHDEGKDSAVHTGIL 173
+R+ +G RY+E+F + + AI S R R PRA+ +++ V ++
Sbjct: 273 DREILGNRYIEIFPAMKS----AIP---SQNRSWQNDRVFTPRAEDPPL-RNTTVTKNVI 324
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+RGLPF A +DI+ FF L + + + +G+PTGEA F ED+ AM+KDR
Sbjct: 325 HMRGLPFDAKAEDIVKFFAPVRLMK--VVVEFGPEGKPTGEAEAYFKTHEDAVLAMSKDR 382
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ RYIEL+ +S +E
Sbjct: 383 EFIMERYIELYLNSCPPSEE 402
Score = 133 (51.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I++ +GLP+S +DIM FF + + + +HI N G+P+G+AF+E + ED A+
Sbjct: 116 IVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILYNKYGKPSGQAFIELEHEEDVGKAL 175
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ R L R+IE+ ++++ + L +
Sbjct: 176 DQHRHYLRDRFIEVREVTNKDAEAILKASK 205
>UNIPROTKB|F1PA85 [details] [associations]
symbol:ESRP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00620000087828 KO:K14947 CTD:80004 OMA:VIKQKYE
EMBL:AAEX03004121 RefSeq:XP_851504.1 Ensembl:ENSCAFT00000032365
GeneID:489745 KEGG:cfa:489745 Uniprot:F1PA85
Length = 717
Score = 283 (104.7 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 78/206 (37%), Positives = 112/206 (54%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S + D ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGTS-LEVARFLSRE---DQV----ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGILGKRYIELFRSTAAEVQQVLNR 437
Score = 249 (92.7 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 69/215 (32%), Positives = 109/215 (50%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + S +P IP + G+D
Sbjct: 407 AALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPALTAPLLPIPFPLAAGTGRDC 466
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 467 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAER 520
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 521 ALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
Score = 37 (18.1 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 34 PPSSSFMYNPPPAYGYVSQPPPFP 57
PP P PA V+ P P P
Sbjct: 4 PPPQPPPPGPDPASDSVADPRPAP 27
>UNIPROTKB|I3LLW0 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:CU210870 EMBL:CU914282 Ensembl:ENSSSCT00000023753
Ensembl:ENSSSCT00000028045 Uniprot:I3LLW0
Length = 955
Score = 281 (104.0 bits), Expect = 3.8e-25, Sum P(2) = 3.8e-25
Identities = 79/212 (37%), Positives = 114/212 (53%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L H +NN G P AL+R
Sbjct: 328 VSVHGMPFSAVENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 384
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 385 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRS 444
Query: 167 -AVH-TGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H G + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 445 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA 504
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 505 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 536
Score = 200 (75.5 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 62/236 (26%), Positives = 112/236 (47%)
Query: 27 GPSFYGTPPSSSFMYNPPPAYGYVSQP-PPFPV---VRLRGLPFDCTEVDVAEFFHGLDI 82
GPS PP + + P+ S+ P V L+GLPF+ V +FF LDI
Sbjct: 418 GPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDI 477
Query: 83 V-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 139
V D +++ N K TGE F AL R++Q MG R+++V + K +
Sbjct: 478 VEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----KGML 533
Query: 140 NEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 197
++ +R + S + + + EG ++ + +PFS K D++ F + +
Sbjct: 534 EKIDMIRKRLQNFSYDQREMMLNPEGDVNSAKV-CAHITNIPFSVTKMDVLQFLEGIPVD 592
Query: 198 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 593 ENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 648
Score = 127 (49.8 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 81
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 82 TGGTIKGSKVTLLLSSKTEMQNMIELSR 109
Score = 123 (48.4 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 880 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 939
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 940 LNDR-PIGSRKVKL 952
Score = 86 (35.3 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 32/106 (30%), Positives = 44/106 (41%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP +D+ FF GL I D VH GEAF V + R
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDG-GVHIVGGELGEAFIVFATDEDARLGMMRTGG 84
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
+ V + S + E I E+S R + + IP A + G
Sbjct: 85 TIKGSKVTLLLSSKTEMQNMI--ELSRRRFETANLDIPPANASRSG 128
Score = 43 (20.2 bits), Expect = 3.8e-25, Sum P(2) = 3.8e-25
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 25 DQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLP 65
+ G SF G+P SS + + V PP P+ + LP
Sbjct: 183 NMGASF-GSPTFSSTIPSTASPMNTVPPPPIPPIPAMPSLP 222
Score = 40 (19.1 bits), Expect = 7.7e-25, Sum P(2) = 7.7e-25
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 34 PPSSSFMYNPP-PAYGYVSQPPPFPVV 59
PP + PP P+ + PPP P +
Sbjct: 213 PPIPAMPSLPPMPSIPPIPVPPPVPTL 239
Score = 38 (18.4 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 34 PPSSSFMYNPPPAYG 48
PP+++ PPP+ G
Sbjct: 120 PPANASRSGPPPSSG 134
Score = 37 (18.1 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 44 PPAYGYVSQPPPFPVVRLRGLP 65
PP S PP P+ + G+P
Sbjct: 246 PPIPPVPSVPPMTPLPPMSGMP 267
>UNIPROTKB|J9NZV3 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AAEX03013911 Ensembl:ENSCAFT00000048972 Uniprot:J9NZV3
Length = 888
Score = 277 (102.6 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 78/212 (36%), Positives = 114/212 (53%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV +FFHGL D V +L H +NN G P AL+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 363 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRS 422
Query: 167 -AVH-TGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H G + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 423 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA 482
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 483 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 202 (76.2 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 63/236 (26%), Positives = 112/236 (47%)
Query: 27 GPSFYGTPPSSSFMYNPPPAYGYVSQP-PPFPV---VRLRGLPFDCTEVDVAEFFHGLDI 82
GPS PP + + P+ S+ P V L+GLPF+ V +FF LDI
Sbjct: 396 GPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDI 455
Query: 83 V-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 139
V D +++ N K TGE F AL R++Q MG R+++V + K +
Sbjct: 456 VEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----KGML 511
Query: 140 NEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 197
++ +R + S + + + EG S+ + +PFS K D++ F + +
Sbjct: 512 EKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-CAHITNIPFSITKMDVLQFLEGIPVD 570
Query: 198 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 571 ENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 127 (49.8 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 117 (46.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 806 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 865
Query: 231 -KDRMTLGSR 239
DR +GSR
Sbjct: 866 LNDR-PIGSR 874
Score = 86 (35.3 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 32/106 (30%), Positives = 44/106 (41%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP +D+ FF GL I D VH GEAF V + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG-GVHIVGGELGEAFIVFATDEDARLGMMRTGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
+ V + S + E I E+S R + + IP A + G
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI--ELSRRRFETANLDIPPANASRSG 106
Score = 43 (20.2 bits), Expect = 7.9e-25, Sum P(2) = 7.9e-25
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 25 DQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLP 65
+ G SF G+P SS + + V PP P+ + LP
Sbjct: 161 NMGASF-GSPTFSSTIPSTASPMNTVPPPPIPPIPAMPSLP 200
Score = 40 (19.1 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 34 PPSSSFMYNPP-PAYGYVSQPPPFPVV 59
PP + PP P+ + PPP P +
Sbjct: 191 PPIPAMPSLPPMPSIPPIPVPPPVPTL 217
Score = 38 (18.4 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 34 PPSSSFMYNPPPAYG 48
PP+++ PPP+ G
Sbjct: 98 PPANASRSGPPPSSG 112
Score = 37 (18.1 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 44 PPAYGYVSQPPPFPVVRLRGLP 65
PP S PP P+ + G+P
Sbjct: 224 PPIPPVPSVPPMTPLPPMSGMP 245
>UNIPROTKB|F1P982 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:AAEX03013911 Ensembl:ENSCAFT00000013161
Uniprot:F1P982
Length = 945
Score = 277 (102.6 bits), Expect = 9.7e-25, Sum P(2) = 9.7e-25
Identities = 78/212 (36%), Positives = 114/212 (53%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV +FFHGL D V +L H +NN G P AL+R
Sbjct: 328 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 384
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 385 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSKSPSGQKRSRS 444
Query: 167 -AVH-TGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H G + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 445 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA 504
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 505 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 536
Score = 202 (76.2 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 63/236 (26%), Positives = 112/236 (47%)
Query: 27 GPSFYGTPPSSSFMYNPPPAYGYVSQP-PPFPV---VRLRGLPFDCTEVDVAEFFHGLDI 82
GPS PP + + P+ S+ P V L+GLPF+ V +FF LDI
Sbjct: 418 GPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDI 477
Query: 83 V-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 139
V D +++ N K TGE F AL R++Q MG R+++V + K +
Sbjct: 478 VEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----KGML 533
Query: 140 NEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 197
++ +R + S + + + EG S+ + +PFS K D++ F + +
Sbjct: 534 EKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-CAHITNIPFSITKMDVLQFLEGIPVD 592
Query: 198 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 593 ENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 648
Score = 127 (49.8 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 81
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 82 TGGTIKGSKVTLLLSSKTEMQNMIELSR 109
Score = 123 (48.4 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 25/74 (33%), Positives = 46/74 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 870 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 929
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 930 LNDR-PIGSRKVKL 942
Score = 86 (35.3 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 32/106 (30%), Positives = 44/106 (41%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP +D+ FF GL I D VH GEAF V + R
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDG-GVHIVGGELGEAFIVFATDEDARLGMMRTGG 84
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
+ V + S + E I E+S R + + IP A + G
Sbjct: 85 TIKGSKVTLLLSSKTEMQNMI--ELSRRRFETANLDIPPANASRSG 128
Score = 43 (20.2 bits), Expect = 9.7e-25, Sum P(2) = 9.7e-25
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 25 DQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLP 65
+ G SF G+P SS + + V PP P+ + LP
Sbjct: 183 NMGASF-GSPTFSSTIPSTASPMNTVPPPPIPPIPAMPSLP 222
Score = 40 (19.1 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 34 PPSSSFMYNPP-PAYGYVSQPPPFPVV 59
PP + PP P+ + PPP P +
Sbjct: 213 PPIPAMPSLPPMPSIPPIPVPPPVPTL 239
Score = 38 (18.4 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 34 PPSSSFMYNPPPAYG 48
PP+++ PPP+ G
Sbjct: 120 PPANASRSGPPPSSG 134
Score = 37 (18.1 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 44 PPAYGYVSQPPPFPVVRLRGLP 65
PP S PP P+ + G+P
Sbjct: 246 PPIPPVPSVPPMTPLPPMSGMP 267
>RGD|1310855 [details] [associations]
symbol:Esrp2 "epithelial splicing regulatory protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA;ISO;ISS]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:1310855 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
eggNOG:NOG262593 HOGENOM:HOG000112401 OrthoDB:EOG49078K
EMBL:BC166804 IPI:IPI00359594 UniGene:Rn.231924
ProteinModelPortal:B2RYJ8 SMR:B2RYJ8 PhosphoSite:B2RYJ8
PRIDE:B2RYJ8 UCSC:RGD:1310855 ArrayExpress:B2RYJ8
Genevestigator:B2RYJ8 Uniprot:B2RYJ8
Length = 716
Score = 290 (107.1 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 79/206 (38%), Positives = 113/206 (54%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 306
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S + D ILR
Sbjct: 307 HKHHMGVRYIEVYKATGEEFVK--------IAGGTS-LEVARFLSRE---DQV----ILR 350
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++DF D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 351 LRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAALRR 410
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 411 HKGMLGKRYIELFRSTAAEVQQVLNR 436
Score = 249 (92.7 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 68/214 (31%), Positives = 111/214 (51%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI-----VD-VLFV-HKNNKFTGEAFCVLGYPLQVDF 110
++RLRGLPF DV +F G + VD +LFV H + + TG+AF +
Sbjct: 348 ILRLRGLPFSAGPADVLDFL-GPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQA 406
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSIPRAKSHDEGKDSA 167
AL+R++ +G+RY+E+FRS E + + + +P IP + G+D
Sbjct: 407 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRDC- 465
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ + E +
Sbjct: 466 -----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERA 520
Query: 226 KAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 521 LAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 554
>UNIPROTKB|G3V8M2 [details] [associations]
symbol:Esrp2 "Epithelial-splicing regulatory protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 SMART:SM00360 RGD:1310855 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098 EMBL:CH473972
GeneTree:ENSGT00620000087828 KO:K14947 CTD:80004 OMA:VIKQKYE
UniGene:Rn.231924 RefSeq:NP_001100893.1 PRIDE:G3V8M2
Ensembl:ENSRNOT00000026873 GeneID:307810 KEGG:rno:307810
NextBio:657907 Uniprot:G3V8M2
Length = 717
Score = 290 (107.1 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 79/206 (38%), Positives = 113/206 (54%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S + D ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGTS-LEVARFLSRE---DQV----ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++DF D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 249 (92.7 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 68/214 (31%), Positives = 111/214 (51%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI-----VD-VLFV-HKNNKFTGEAFCVLGYPLQVDF 110
++RLRGLPF DV +F G + VD +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPADVLDFL-GPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQA 407
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSIPRAKSHDEGKDSA 167
AL+R++ +G+RY+E+FRS E + + + +P IP + G+D
Sbjct: 408 ALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRDC- 466
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ + E +
Sbjct: 467 -----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVERA 521
Query: 226 KAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 522 LAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
>UNIPROTKB|F1MND5 [details] [associations]
symbol:RBM12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087828 CTD:10137 OMA:PVFLGPL
EMBL:DAAA02036525 IPI:IPI00924418 RefSeq:NP_001185821.1
UniGene:Bt.91136 Ensembl:ENSBTAT00000061188 GeneID:100138139
KEGG:bta:100138139 NextBio:20789665 Uniprot:F1MND5
Length = 953
Score = 275 (101.9 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 78/212 (36%), Positives = 113/212 (53%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV +FFHGL D V +L H +NN G P AL+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H + +PR+KS K S
Sbjct: 363 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQPLPRSKSPSGQKRSRS 422
Query: 167 -AVH-TGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H G + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 423 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA 482
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 483 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 197 (74.4 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 54/200 (27%), Positives = 100/200 (50%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRN 115
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R+
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGIL 173
+Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 492 KQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVTSAKV-CA 546
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ + R
Sbjct: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
Query: 234 MTLGSRYIELFPSSHEEMDE 253
L R + + E+M E
Sbjct: 607 KKLNGREAFVHVVTLEDMRE 626
Score = 127 (49.8 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 124 (48.7 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 878 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 937
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 938 LNDR-PIGSRKVKL 950
Score = 86 (35.3 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 32/106 (30%), Positives = 44/106 (41%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP +D+ FF GL I D VH GEAF V + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG-GVHIVGGELGEAFIVFATDEDARLGMMRTGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
+ V + S + E I E+S R + + IP A + G
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI--ELSRRRFETANLDIPPANASRSG 106
Score = 43 (20.2 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 25 DQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLP 65
+ G SF G+P SS + + V PP P+ + LP
Sbjct: 161 NMGASF-GSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLP 200
Score = 40 (19.1 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 34 PPSSSFMYNPP-PAYGYVSQPPPFPVV 59
PP + PP P+ + PPP P +
Sbjct: 191 PPIPAMPSLPPMPSIPPIPVPPPVPTM 217
Score = 38 (18.4 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 34 PPSSSFMYNPPPAYG 48
PP+++ PPP+ G
Sbjct: 98 PPANASRSGPPPSSG 112
Score = 37 (18.1 bits), Expect = 6.9e-24, Sum P(2) = 6.9e-24
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 44 PPAYGYVSQPPPFPVVRLRGLP 65
PP S PP P+ + G+P
Sbjct: 224 PPIPPVPSVPPMTPLPPMSGMP 245
>UNIPROTKB|Q5F3D2 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG262593
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OMA:PYDRPLG
OrthoDB:EOG49P9ZV EMBL:AADN02028014 EMBL:AJ851718 IPI:IPI00573787
RefSeq:NP_001012610.1 UniGene:Gga.22904 SMR:Q5F3D2
Ensembl:ENSGALT00000006294 GeneID:423686 KEGG:gga:423686
InParanoid:Q5F3D2 NextBio:20826120 Uniprot:Q5F3D2
Length = 342
Score = 189 (71.6 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 175 (66.7 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 40/84 (47%), Positives = 54/84 (64%)
Query: 166 SAVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF E
Sbjct: 191 SGFHGGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHE 248
Query: 224 DSKAAMAKDRMTLGSRYIELFPSS 247
D+ AAM+KD+ + RYIELF +S
Sbjct: 249 DAVAAMSKDKNHMQHRYIELFLNS 272
Score = 153 (58.9 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S + E
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 39 (18.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 12 DGREMGAKRQRLIDQGPSFYG 32
DGR MG D G F+G
Sbjct: 175 DGRGMGGHGYGAGDAGSGFHG 195
>UNIPROTKB|A5D9B4 [details] [associations]
symbol:HNRPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 eggNOG:NOG262593 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 IPI:IPI00696405 UniGene:Bt.8355 OMA:MEANMTI
EMBL:DAAA02070773 EMBL:DAAA02070774 EMBL:BT030533 SMR:A5D9B4
Ensembl:ENSBTAT00000009864 InParanoid:A5D9B4 Uniprot:A5D9B4
Length = 449
Score = 185 (70.2 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 180 (68.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D+A + G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEM 251
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 178 (67.7 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
Score = 153 (58.9 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 132 (51.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
>UNIPROTKB|Q3SZF3 [details] [associations]
symbol:HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9913 "Bos taurus" [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 EMBL:BC102894 IPI:IPI00696405 RefSeq:NP_001069476.1
UniGene:Bt.8355 ProteinModelPortal:Q3SZF3 SMR:Q3SZF3 PRIDE:Q3SZF3
GeneID:534001 KEGG:bta:534001 CTD:3188 InParanoid:Q3SZF3
NextBio:20876226 Uniprot:Q3SZF3
Length = 449
Score = 185 (70.2 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 180 (68.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D+A + G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEM 251
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 178 (67.7 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
Score = 153 (58.9 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 132 (51.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
>UNIPROTKB|E2RJH5 [details] [associations]
symbol:HNRNPH2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0015629 "actin cytoskeleton" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GeneTree:ENSGT00620000087736 KO:K12898
InterPro:IPR012996 Pfam:PF08080 CTD:3188 OMA:MEANMTI
EMBL:AAEX03026717 RefSeq:XP_861916.1 RefSeq:XP_862053.2
Ensembl:ENSCAFT00000028063 GeneID:480989 KEGG:cfa:480989
Uniprot:E2RJH5
Length = 449
Score = 185 (70.2 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 180 (68.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D+A + G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEM 251
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 178 (67.7 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
Score = 153 (58.9 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 132 (51.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
>MGI|MGI:1201779 [details] [associations]
symbol:Hnrnph2 "heterogeneous nuclear ribonucleoprotein H2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1201779
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 EMBL:U58105 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 GeneTree:ENSGT00620000087736 KO:K12898
OrthoDB:EOG4CRM03 InterPro:IPR012996 Pfam:PF08080 CTD:3188
EMBL:AK077716 EMBL:AK164115 EMBL:AK168116 EMBL:AK169104
EMBL:BC005461 IPI:IPI00108143 RefSeq:NP_063921.1 UniGene:Mm.315909
ProteinModelPortal:P70333 SMR:P70333 STRING:P70333
PhosphoSite:P70333 PaxDb:P70333 PRIDE:P70333 DNASU:56258
Ensembl:ENSMUST00000050331 Ensembl:ENSMUST00000059297
Ensembl:ENSMUST00000074950 Ensembl:ENSMUST00000113202
Ensembl:ENSMUST00000113203 GeneID:56258 KEGG:mmu:56258
InParanoid:P70333 NextBio:312148 Bgee:P70333 Genevestigator:P70333
GermOnline:ENSMUSG00000045427 Uniprot:P70333
Length = 449
Score = 180 (68.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D+A + G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEM 251
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 180 (68.4 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 178 (67.7 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
Score = 153 (58.9 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 134 (52.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + V F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
>RGD|1549784 [details] [associations]
symbol:Hnrnph2 "heterogeneous nuclear ribonucleoprotein H2 (H')"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0015629 "actin
cytoskeleton" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:1549784 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0015629
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG262593
HSSP:P55795 HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3188 OMA:MEANMTI EMBL:BC079240
IPI:IPI00464512 RefSeq:NP_001014041.1 UniGene:Rn.229731
ProteinModelPortal:Q6AY09 SMR:Q6AY09 IntAct:Q6AY09 STRING:Q6AY09
PhosphoSite:Q6AY09 PRIDE:Q6AY09 Ensembl:ENSRNOT00000015518
GeneID:308650 KEGG:rno:308650 UCSC:RGD:1549784 InParanoid:Q6AY09
NextBio:659306 Genevestigator:Q6AY09 Uniprot:Q6AY09
Length = 449
Score = 180 (68.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 36/87 (41%), Positives = 57/87 (65%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D+A + G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEM 251
++ A+ K + +G RYIE+F SS E+
Sbjct: 165 AEKALKKHKERIGHRYIEIFKSSRAEV 191
Score = 180 (68.4 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 34/86 (39%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 178 (67.7 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
Score = 153 (58.9 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 173 KERIGHRYIEIFKSSRAE 190
Score = 134 (52.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + V F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
>MGI|MGI:1924661 [details] [associations]
symbol:Esrp2 "epithelial splicing regulatory protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924661 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
HSSP:P55795 CTD:80004 OMA:VIKQKYE OrthoDB:EOG49078K EMBL:BC031444
EMBL:AK020578 IPI:IPI00276878 RefSeq:NP_789808.1 UniGene:Mm.183003
ProteinModelPortal:Q8K0G8 SMR:Q8K0G8 STRING:Q8K0G8
PhosphoSite:Q8K0G8 PaxDb:Q8K0G8 PRIDE:Q8K0G8
Ensembl:ENSMUST00000115979 GeneID:77411 KEGG:mmu:77411
UCSC:uc009nff.1 InParanoid:Q8K0G8 NextBio:346885 Bgee:Q8K0G8
CleanEx:MM_RBM35B Genevestigator:Q8K0G8 Uniprot:Q8K0G8
Length = 717
Score = 284 (105.0 bits), Expect = 5.9e-24, P = 5.9e-24
Identities = 78/206 (37%), Positives = 112/206 (54%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S + D ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGTS-LEVARFLSRE---DQV----ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 241 (89.9 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 67/215 (31%), Positives = 108/215 (50%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + + +P IP + G+D
Sbjct: 407 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRDC 466
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ + E
Sbjct: 467 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVER 520
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 521 ALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMGG 555
>MGI|MGI:1922960 [details] [associations]
symbol:Rbm12 "RNA binding motif protein 12" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1922960 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL833786 UniGene:Mm.27660
GeneTree:ENSGT00620000087828 HOVERGEN:HBG057691 CTD:10137
OMA:PVFLGPL EMBL:AF345334 EMBL:AF393215 EMBL:AF393216 EMBL:AK017591
EMBL:AK029180 EMBL:AK035014 EMBL:AK080772 EMBL:AK166833
EMBL:BC026891 EMBL:BC027810 EMBL:BC052473 IPI:IPI00322263
RefSeq:NP_083673.3 RefSeq:NP_733486.2 UniGene:Mm.441281 PDB:2CQP
PDBsum:2CQP ProteinModelPortal:Q8R4X3 SMR:Q8R4X3 IntAct:Q8R4X3
STRING:Q8R4X3 PhosphoSite:Q8R4X3 PRIDE:Q8R4X3
Ensembl:ENSMUST00000059647 Ensembl:ENSMUST00000109604 GeneID:75710
KEGG:mmu:75710 UCSC:uc008nmh.1 InParanoid:Q3TKT7 ChiTaRS:RBM12
EvolutionaryTrace:Q8R4X3 NextBio:343756 Bgee:Q8R4X3
CleanEx:MM_RBM12 Genevestigator:Q8R4X3
GermOnline:ENSMUSG00000038171 Uniprot:Q8R4X3
Length = 992
Score = 286 (105.7 bits), Expect = 6.6e-24, P = 6.6e-24
Identities = 86/247 (34%), Positives = 125/247 (50%)
Query: 25 DQGPSFYGT-PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGL--D 81
+ P F G P +S N + + P V + G+PF E DV EFFHGL D
Sbjct: 271 NMNPVFLGPLNPVNSIQMNSQSSVKSLPINPDDLYVSVHGMPFSAMENDVREFFHGLRVD 330
Query: 82 IVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-- 137
V +L H +NN G P AL+RNR M +RYVEV + +++ A
Sbjct: 331 AVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGG 387
Query: 138 -IANEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSAGKDDIM 188
I + S G H +++PR+KS K S + H G + L+GLPF A ++
Sbjct: 388 HITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVI 447
Query: 189 DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248
DFFK + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I++ P +
Sbjct: 448 DFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK 507
Query: 249 EEMDEAL 255
+ M E +
Sbjct: 508 KGMLEKI 514
Score = 193 (73.0 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 62/236 (26%), Positives = 110/236 (46%)
Query: 27 GPSFYGTPPSSSFMYNPPPAYGYVSQP-PPFPV---VRLRGLPFDCTEVDVAEFFHGLDI 82
GPS PP + + P+ S+ P V L+GLPF+ V +FF LDI
Sbjct: 396 GPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDI 455
Query: 83 V-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 139
V D +++ N K TGE F AL R++Q MG R+++V + K +
Sbjct: 456 VEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----KGML 511
Query: 140 NEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 197
++ +R + S + + + EG+ S+ + +PFS K D++ F + +
Sbjct: 512 EKIDMIRKRLQNFSYDQRELVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQFLEGIPVD 570
Query: 198 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
E ++H+ ++++G+ G+A V+F +D+ + R L R + + E+M E
Sbjct: 571 ESAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 127 (49.8 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 124 (48.7 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 917 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 976
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 977 LNDR-PIGSRKVKL 989
Score = 86 (35.3 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 32/106 (30%), Positives = 44/106 (41%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP +D+ FF GL I D VH GEAF V + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG-GVHIVGGELGEAFIVFATDEDARLGMMRTGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
+ V + S + E I E+S R + + IP A + G
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI--ELSRRRFETANLDIPPANASRSG 106
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 27 GPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLP 65
G SF G+P SS + + V PP P+ + LP
Sbjct: 163 GTSF-GSPTFSSTIPSTASPMNTVPPPPIPPIPAMPSLP 200
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 34 PPSSSFMYNPPPAYGYVSQ 52
PP+++ PPP+ G S+
Sbjct: 98 PPANASRSGPPPSSGMSSR 116
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 34 PPSSSFMYNPP-PAYGYVSQPPPFPVV 59
PP + PP P+ + PPP P +
Sbjct: 191 PPIPAMPSLPPLPSIPPIPVPPPVPTL 217
>ZFIN|ZDB-GENE-081022-16 [details] [associations]
symbol:rbm12 "RNA binding motif protein 12"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-081022-16 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG057691 CTD:10137 HOGENOM:HOG000143525
EMBL:BC162102 EMBL:BC162473 EMBL:AY226101 IPI:IPI00483025
RefSeq:NP_001003856.1 UniGene:Dr.133225 SMR:Q6XLI5 GeneID:445379
KEGG:dre:445379 NextBio:20832083 Uniprot:Q6XLI5
Length = 876
Score = 281 (104.0 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 72/216 (33%), Positives = 113/216 (52%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQV 108
++ P F V L GLPF E ++ +FFHGL I + + N + +G A P +
Sbjct: 296 ITNPDDF-YVHLHGLPFSVLEHEIRDFFHGLGIESIRLLKDNLGRNSGRALVKFYSPHES 354
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-----RSI--PRAKSHD 161
AL+RN +G+RY+EV + +++ +++ + S G S H RS P S +
Sbjct: 355 FEALKRNAGMIGQRYIEVSPATERQWRESVGH--SKAGGDSEHNRHRRRSANSPTPSSGE 412
Query: 162 EGKDSAVHT--GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
+ + H + L+GLP+ A I +FFK+ + EDSI+I +GR TGE FVEF
Sbjct: 413 RARSRSPHKLDYCVYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGEGFVEF 472
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
N D KAA+ +GSR+I++ P + + M E +
Sbjct: 473 RNEMDYKAALGCHMQYMGSRFIQVHPITKKNMYEKI 508
Score = 180 (68.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 54/198 (27%), Positives = 92/198 (46%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRN 115
V L+GLP++ + EFF LDIV D +++ N + TGE F + AL +
Sbjct: 426 VYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGEGFVEFRNEMDYKAALGCH 485
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
Q MG R+++V ++ Y+ I ++G + KS G SA +
Sbjct: 486 MQYMGSRFIQVHPITKKNMYEKIDAIRKRMQGSQGDQ-----KSSSGGGKSA--KSCAHI 538
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 235
+P++ K D+ F L E+S+ + ++S+G G+A V+F + ED+ A R
Sbjct: 539 TNIPYNVTKKDVRLFLDGIELFEESLKVLVDSNGNGLGQAIVQFKSDEDALKAERLHRQK 598
Query: 236 LGSRYIELFPSSHEEMDE 253
L R + + ++M E
Sbjct: 599 LNGRDAFVHLVTFDQMKE 616
Score = 126 (49.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 28/87 (32%), Positives = 50/87 (57%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ L GLPFS + +I DFF L +SI + ++ GR +G A V+F + +S A+ ++
Sbjct: 304 VHLHGLPFSVLEHEIRDFFHG--LGIESIRLLKDNLGRNSGRALVKFYSPHESFEALKRN 361
Query: 233 RMTLGSRYIELFPSSHEEMDEALSRGR 259
+G RYIE+ P++ + E++ +
Sbjct: 362 AGMIGQRYIEVSPATERQWRESVGHSK 388
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 29/88 (32%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
++ + L SS EM + R
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMQNMIELSR 87
Score = 111 (44.1 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 31/110 (28%), Positives = 59/110 (53%)
Query: 136 KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 195
KA+ + +G P R S G ++ T I++++ +PF+ D+I+DFF +
Sbjct: 767 KAVTQNRAGNQGQRPPSDNLRGPSPG-GPGNSRPT-IVKIQNMPFTVTVDEIIDFFYGYQ 824
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA--KDRMTLGSRYIEL 243
+ S+ + + G PTGEA V F + +++ AA+ DR +G+R +++
Sbjct: 825 VLPGSVCLQFSDKGLPTGEAMVAFDSHDEAMAAVMDLNDR-PIGARKVKI 873
Score = 77 (32.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 25/81 (30%), Positives = 34/81 (41%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP +D+ FF GL I D VH GEAF V + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG-GVHIVGGEHGEAFIVFATDEDARLGMMRTGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI 138
++ V + S + E I
Sbjct: 63 SIKGSKVSLLLSSKTEMQNMI 83
>UNIPROTKB|Q9H6T0 [details] [associations]
symbol:ESRP2 "Epithelial splicing regulatory protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0005813
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043484 eggNOG:NOG262593
HOGENOM:HOG000112401 KO:K14947 HSSP:Q9Z2X1 CTD:80004 OMA:VIKQKYE
OrthoDB:EOG49078K EMBL:AK025571 EMBL:AK025901 EMBL:BC030146
EMBL:AF289577 IPI:IPI00034099 IPI:IPI00827597 RefSeq:NP_079215.2
UniGene:Hs.436585 UniGene:Hs.592053 ProteinModelPortal:Q9H6T0
SMR:Q9H6T0 IntAct:Q9H6T0 STRING:Q9H6T0 PhosphoSite:Q9H6T0
DMDM:74761482 PaxDb:Q9H6T0 PRIDE:Q9H6T0 Ensembl:ENST00000473183
Ensembl:ENST00000565858 GeneID:80004 KEGG:hsa:80004 UCSC:uc002evq.1
UCSC:uc010cfa.1 GeneCards:GC16M068263 HGNC:HGNC:26152 HPA:HPA048597
MIM:612960 neXtProt:NX_Q9H6T0 PharmGKB:PA164719361
InParanoid:Q9H6T0 ChiTaRS:ESRP2 GenomeRNAi:80004 NextBio:70079
Bgee:Q9H6T0 CleanEx:HS_RBM35B Genevestigator:Q9H6T0 Uniprot:Q9H6T0
Length = 727
Score = 279 (103.3 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 76/206 (36%), Positives = 112/206 (54%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S + D ILR
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK--------IAGGTS-LEVARFLSRE---DQV----ILR 361
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 362 LRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 421
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 422 HKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 246 (91.7 bits), Expect = 7.4e-20, P = 7.4e-20
Identities = 68/213 (31%), Positives = 108/213 (50%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + S +P IP + G+D
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 476
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 477 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 532
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 533 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 565
>UNIPROTKB|D4A116 [details] [associations]
symbol:Rbm12 "Protein Rbm12" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1594333 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC118414 IPI:IPI00560597 Ensembl:ENSRNOT00000026700
ArrayExpress:D4A116 Uniprot:D4A116
Length = 1003
Score = 280 (103.6 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 85/244 (34%), Positives = 123/244 (50%)
Query: 28 PSFYGT-PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGL--DIVD 84
P F G P + N + + P V + G+PF E DV EFFHGL D V
Sbjct: 274 PVFLGPLNPVNPIQMNSQSSVKSLPINPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVH 333
Query: 85 VLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IA 139
+L H +NN G P AL+RNR M +RYVEV + +++ A I
Sbjct: 334 LLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHIT 390
Query: 140 NEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSAGKDDIMDFF 191
+ S G H +++PR+KS K S + H G + L+GLPF A ++DFF
Sbjct: 391 FKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFF 450
Query: 192 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
K + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I++ P + + M
Sbjct: 451 KKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITKKGM 510
Query: 252 DEAL 255
E +
Sbjct: 511 LEKI 514
Score = 195 (73.7 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 62/236 (26%), Positives = 111/236 (47%)
Query: 27 GPSFYGTPPSSSFMYNPPPAYGYVSQP-PPFPV---VRLRGLPFDCTEVDVAEFFHGLDI 82
GPS PP + + P+ S+ P V L+GLPF+ V +FF LDI
Sbjct: 396 GPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDI 455
Query: 83 V-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 139
V D +++ N K TGE F AL R++Q MG R+++V + K +
Sbjct: 456 VEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----KGML 511
Query: 140 NEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 197
++ +R + S + + + EG+ S+ + +PFS K D++ F + +
Sbjct: 512 EKIDMIRKRLQNFSYDQREMVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQFLEGIPVD 570
Query: 198 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
E+++H+ ++++G+ G+A V+F +D+ + R L R + + E+M E
Sbjct: 571 ENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 127 (49.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 124 (48.7 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 928 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 987
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 988 LNDR-PIGSRKVKL 1000
Score = 86 (35.3 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 32/106 (30%), Positives = 44/106 (41%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP +D+ FF GL I D VH GEAF V + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG-GVHIVGGELGEAFIVFATDEDARLGMMRTGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
+ V + S + E I E+S R + + IP A + G
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI--ELSRRRFETANLDIPPANASRSG 106
Score = 43 (20.2 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 34 PPSSSFMYNPP-PAYGYVSQPPPFPVV 59
PP S PP P+ + PPP P +
Sbjct: 191 PPIPSMPSLPPLPSIPPIPVPPPVPTL 217
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 27 GPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLP 65
G SF G+P SS + + V PP P+ + LP
Sbjct: 163 GTSF-GSPTFSSTIPSTASPMNTVPPPPIPPIPSMPSLP 200
Score = 40 (19.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 34 PPSSSFMYNPPPAYGYVSQ 52
PP+++ PPP+ G S+
Sbjct: 98 PPANASRSGPPPSSGMSSR 116
>RGD|1594333 [details] [associations]
symbol:Rbm12 "RNA binding motif protein 12" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1594333 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH474050 eggNOG:NOG299235
GeneTree:ENSGT00620000087828 HOVERGEN:HBG057691 CTD:10137
OMA:PVFLGPL EMBL:AC118414 EMBL:AY226099 IPI:IPI00421433
RefSeq:NP_001032746.1 UniGene:Rn.7119 SMR:Q6XLI7
Ensembl:ENSRNOT00000047246 GeneID:652928 KEGG:rno:652928
UCSC:RGD:1594333 HOGENOM:HOG000143525 InParanoid:Q6XLI7
NextBio:714873 Genevestigator:Q6XLI7 Uniprot:Q6XLI7
Length = 1032
Score = 280 (103.6 bits), Expect = 3.1e-23, P = 3.1e-23
Identities = 85/244 (34%), Positives = 123/244 (50%)
Query: 28 PSFYGT-PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGL--DIVD 84
P F G P + N + + P V + G+PF E DV EFFHGL D V
Sbjct: 274 PVFLGPLNPVNPIQMNSQSSVKSLPINPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVH 333
Query: 85 VLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IA 139
+L H +NN G P AL+RNR M +RYVEV + +++ A I
Sbjct: 334 LLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHIT 390
Query: 140 NEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSAGKDDIMDFF 191
+ S G H +++PR+KS K S + H G + L+GLPF A ++DFF
Sbjct: 391 FKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFF 450
Query: 192 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
K + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I++ P + + M
Sbjct: 451 KKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITKKGM 510
Query: 252 DEAL 255
E +
Sbjct: 511 LEKI 514
Score = 195 (73.7 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 62/236 (26%), Positives = 111/236 (47%)
Query: 27 GPSFYGTPPSSSFMYNPPPAYGYVSQP-PPFPV---VRLRGLPFDCTEVDVAEFFHGLDI 82
GPS PP + + P+ S+ P V L+GLPF+ V +FF LDI
Sbjct: 396 GPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDI 455
Query: 83 V-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 139
V D +++ N K TGE F AL R++Q MG R+++V + K +
Sbjct: 456 VEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRHKQYMGNRFIQVHPITK----KGML 511
Query: 140 NEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 197
++ +R + S + + + EG+ S+ + +PFS K D++ F + +
Sbjct: 512 EKIDMIRKRLQNFSYDQREMVLNPEGEVSSAKV-CAHITNIPFSITKMDVLQFLEGIPVD 570
Query: 198 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
E+++H+ ++++G+ G+A V+F +D+ + R L R + + E+M E
Sbjct: 571 ENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 127 (49.8 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 124 (48.7 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 957 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 1016
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 1017 LNDR-PIGSRKVKL 1029
Score = 86 (35.3 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 32/106 (30%), Positives = 44/106 (41%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP +D+ FF GL I D VH GEAF V + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG-GVHIVGGELGEAFIVFATDEDARLGMMRTGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
+ V + S + E I E+S R + + IP A + G
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI--ELSRRRFETANLDIPPANASRSG 106
Score = 43 (20.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 34 PPSSSFMYNPP-PAYGYVSQPPPFPVV 59
PP S PP P+ + PPP P +
Sbjct: 191 PPIPSMPSLPPLPSIPPIPVPPPVPTL 217
Score = 42 (19.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 27 GPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLP 65
G SF G+P SS + + V PP P+ + LP
Sbjct: 163 GTSF-GSPTFSSTIPSTASPMNTVPPPPIPPIPSMPSLP 200
Score = 40 (19.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 34 PPSSSFMYNPPPAYGYVSQ 52
PP+++ PPP+ G S+
Sbjct: 98 PPANASRSGPPPSSGMSSR 116
>UNIPROTKB|F1PQY5 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AAEX03015961 Ensembl:ENSCAFT00000014811 Uniprot:F1PQY5
Length = 521
Score = 272 (100.8 bits), Expect = 5.1e-23, P = 5.1e-23
Identities = 72/206 (34%), Positives = 115/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 66 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 126 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 169
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 170 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 229
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 230 HKDLLGKRYIELFRSTAAEVQQVLNR 255
Score = 246 (91.7 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 68/210 (32%), Positives = 109/210 (51%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF I +LFV + + + TG+AF + A
Sbjct: 167 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + S P I + V
Sbjct: 227 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 286
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 287 I-RLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 345
Query: 230 AK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
K + T+ RY+E+F S EEM+ L G
Sbjct: 346 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 375
Score = 142 (55.0 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 137 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 195
A+ +E + R P R + +S K + I+R RGLP+ + DI FFK
Sbjct: 30 AMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTIVRARGLPWQSSDQDIARFFKGLN 89
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 90 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 144
>UNIPROTKB|F1MSN9 [details] [associations]
symbol:ESRP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 OMA:VIKQKYE EMBL:DAAA02046691
IPI:IPI00699877 UniGene:Bt.94194 Ensembl:ENSBTAT00000005736
NextBio:20869663 Uniprot:F1MSN9
Length = 717
Score = 275 (101.9 bits), Expect = 5.5e-23, P = 5.5e-23
Identities = 77/206 (37%), Positives = 111/206 (53%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VV RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVWARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S + D ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGTS-LEVARFLSRE---DQV----ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 250 (93.1 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 69/215 (32%), Positives = 109/215 (50%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + S +P IP + G+D
Sbjct: 407 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAAGTGRDC 466
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 467 ------VRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTSAER 520
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 521 ALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGG 555
>UNIPROTKB|F1MVN3 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484 CTD:54845
GeneTree:ENSGT00620000087828 KO:K14947 OMA:VAAMTEC
EMBL:DAAA02039465 IPI:IPI00913393 RefSeq:NP_001179931.1
UniGene:Bt.62027 Ensembl:ENSBTAT00000037192 GeneID:538640
KEGG:bta:538640 NextBio:20877490 Uniprot:F1MVN3
Length = 677
Score = 273 (101.2 bits), Expect = 8.0e-23, P = 8.0e-23
Identities = 73/206 (35%), Positives = 115/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 286 HKHHMGSRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 247 (92.0 bits), Expect = 5.1e-20, P = 5.1e-20
Identities = 70/214 (32%), Positives = 113/214 (52%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF I +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH-T 170
L++++ +G+RY+E+FRS E + + N S +P +P V T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVL-NRFSS----APLIPLPTPPIIPVLPQQFVPPT 441
Query: 171 GI---LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
I +RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ +
Sbjct: 442 NIRDCIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRA 501
Query: 226 KAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
A K + T+ RY+E+F S EEM+ L G
Sbjct: 502 FMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>UNIPROTKB|F1PSN8 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00620000087828 OMA:VAAMTEC EMBL:AAEX03015961
Ensembl:ENSCAFT00000014804 Uniprot:F1PSN8
Length = 634
Score = 272 (100.8 bits), Expect = 8.8e-23, P = 8.8e-23
Identities = 72/206 (34%), Positives = 115/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 183 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 242
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 243 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 286
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 287 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 346
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 347 HKDLLGKRYIELFRSTAAEVQQVLNR 372
Score = 246 (91.7 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 68/210 (32%), Positives = 109/210 (51%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF I +LFV + + + TG+AF + A
Sbjct: 284 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 343
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + S P I + V
Sbjct: 344 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 403
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 404 I-RLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 462
Query: 230 AK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
K + T+ RY+E+F S EEM+ L G
Sbjct: 463 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 492
Score = 142 (55.0 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 137 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 195
A+ +E + R P R + +S K + I+R RGLP+ + DI FFK
Sbjct: 147 AMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTIVRARGLPWQSSDQDIARFFKGLN 206
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 207 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 261
>UNIPROTKB|F1RY52 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 OMA:VAAMTEC EMBL:CU468309
Ensembl:ENSSSCT00000006690 Uniprot:F1RY52
Length = 711
Score = 273 (101.2 bits), Expect = 8.9e-23, P = 8.9e-23
Identities = 73/206 (35%), Positives = 115/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 256 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 315
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 316 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 359
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 360 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 419
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 420 HKDLLGKRYIELFRSTAAEVQQVLNR 445
Score = 246 (91.7 bits), Expect = 7.1e-20, P = 7.1e-20
Identities = 68/210 (32%), Positives = 109/210 (51%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF I +LFV + + + TG+AF + A
Sbjct: 357 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 416
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + S P I + V
Sbjct: 417 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVTPTNVRDC 476
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 477 I-RLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 535
Query: 230 AK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
K + T+ RY+E+F S EEM+ L G
Sbjct: 536 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 565
>UNIPROTKB|Q9NTZ6 [details] [associations]
symbol:RBM12 "RNA-binding protein 12" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CH471077 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL109827 UniGene:Hs.700188 GermOnline:ENSG00000125976
eggNOG:NOG299235 HOVERGEN:HBG057691 EMBL:AJ289772 EMBL:AF345332
EMBL:AF345335 EMBL:AF393214 EMBL:AB018308 EMBL:AK092239
EMBL:BC012787 EMBL:BC013981 EMBL:AL834472 EMBL:AB015336
IPI:IPI00550308 RefSeq:NP_001185767.1 RefSeq:NP_001185769.1
RefSeq:NP_006038.2 RefSeq:NP_690051.1 PDB:1WEL PDB:2CPY PDB:2DNN
PDB:2EK1 PDB:2EK6 PDBsum:1WEL PDBsum:2CPY PDBsum:2DNN PDBsum:2EK1
PDBsum:2EK6 ProteinModelPortal:Q9NTZ6 SMR:Q9NTZ6 IntAct:Q9NTZ6
MINT:MINT-1366084 STRING:Q9NTZ6 PhosphoSite:Q9NTZ6 DMDM:30173387
PaxDb:Q9NTZ6 PeptideAtlas:Q9NTZ6 PRIDE:Q9NTZ6 DNASU:10137
Ensembl:ENST00000359646 Ensembl:ENST00000374104
Ensembl:ENST00000374114 GeneID:10137 KEGG:hsa:10137 UCSC:uc002xdq.3
CTD:10137 GeneCards:GC20M034236 HGNC:HGNC:9898 HPA:HPA043258
HPA:HPA043621 MIM:607179 neXtProt:NX_Q9NTZ6 PharmGKB:PA34261
InParanoid:Q9NTZ6 OMA:PVFLGPL OrthoDB:EOG44TP7C PhylomeDB:Q9NTZ6
EvolutionaryTrace:Q9NTZ6 GenomeRNAi:10137 NextBio:38349
ArrayExpress:Q9NTZ6 Bgee:Q9NTZ6 CleanEx:HS_RBM12
Genevestigator:Q9NTZ6 Uniprot:Q9NTZ6
Length = 932
Score = 275 (101.9 bits), Expect = 8.9e-23, P = 8.9e-23
Identities = 83/244 (34%), Positives = 123/244 (50%)
Query: 28 PSFYGT-PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGL--DIVD 84
P F G P + N + + P V + G+PF E DV +FFHGL D V
Sbjct: 274 PMFLGPLNPVNPIQMNSQSSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVH 333
Query: 85 VLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IA 139
+L H +NN G P AL+RNR M +RYVEV + +++ A I
Sbjct: 334 LLKDHVGRNN---GNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHIT 390
Query: 140 NEVSDVRGGSPH---RSIPRAKSHDEGKDS---AVH-TGI-LRLRGLPFSAGKDDIMDFF 191
+ + G H +++PR+KS K S + H G + L+GLPF A ++DFF
Sbjct: 391 FKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFF 450
Query: 192 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
K + EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I++ P + + M
Sbjct: 451 KKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGM 510
Query: 252 DEAL 255
E +
Sbjct: 511 LEKI 514
Score = 200 (75.5 bits), Expect = 9.4e-15, P = 9.4e-15
Identities = 62/238 (26%), Positives = 113/238 (47%)
Query: 25 DQGPSFYGTPPSSSFMYNPPPAYGYVSQP-PPFPV---VRLRGLPFDCTEVDVAEFFHGL 80
+ GPS PP + + P+ S+ P V L+GLPF+ V +FF L
Sbjct: 394 NMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKL 453
Query: 81 DIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 137
DIV D +++ N K TGE F AL R++Q MG R+++V + K
Sbjct: 454 DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITK----KG 509
Query: 138 IANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 195
+ ++ +R + S + + + EG ++ + +PFS K D++ F +
Sbjct: 510 MLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-CAHITNIPFSITKMDVLQFLEGIP 568
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ E+++H+ ++++G+ G+A V+F N +D++ + R L R + + E+M E
Sbjct: 569 VDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMRE 626
Score = 127 (49.8 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 124 (48.7 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 30/98 (30%), Positives = 52/98 (53%)
Query: 148 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207
G H P + GK +++++ +PF+ D+I+DFF + + S+ + N
Sbjct: 836 GPIHIGGPPGFASSSGKPGPT---VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE 892
Query: 208 DGRPTGEAFVEFANAEDSKAAMA--KDRMTLGSRYIEL 243
G PTGEA V F + +++ AA+ DR +GSR ++L
Sbjct: 893 KGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKL 929
Score = 86 (35.3 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 32/106 (30%), Positives = 44/106 (41%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP +D+ FF GL I D VH GEAF V + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG-GVHIVGGELGEAFIVFATDEDARLGMMRTGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
+ V + S + E I E+S R + + IP A + G
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI--ELSRRRFETANLDIPPANASRSG 106
Score = 43 (20.2 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 25 DQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLP 65
+ G SF G+P SS + + V PP P+ + LP
Sbjct: 161 NMGASF-GSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLP 200
Score = 40 (19.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 34 PPSSSFMYNPPPAYGYVSQ 52
PP+++ PPP+ G S+
Sbjct: 98 PPANASRSGPPPSSGMSSR 116
Score = 40 (19.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 34 PPSSSFMYNPP-PAYGYVSQPPPFPVV 59
PP + PP P+ + PPP P +
Sbjct: 191 PPIPAMPSLPPMPSIPPIPVPPPVPTL 217
Score = 37 (18.1 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 44 PPAYGYVSQPPPFPVVRLRGLP 65
PP S PP P+ + G+P
Sbjct: 224 PPIPPVPSVPPMTPLPPMSGMP 245
>UNIPROTKB|H0YBR2 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 Ensembl:ENST00000519505
Uniprot:H0YBR2
Length = 502
Score = 269 (99.8 bits), Expect = 9.5e-23, P = 9.5e-23
Identities = 72/206 (34%), Positives = 115/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 92 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 151
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 152 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 195
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 196 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 255
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 256 HKDLLGKRYIELFRSTAAEVQQVLNR 281
Score = 244 (91.0 bits), Expect = 5.3e-20, P = 5.3e-20
Identities = 67/210 (31%), Positives = 108/210 (51%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF I +LFV + + + TG+AF + A
Sbjct: 193 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 252
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + S P I + V
Sbjct: 253 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 312
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 313 I-RLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 371
Query: 230 AK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
K + + RY+E+F S EEM+ L G
Sbjct: 372 QKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 401
Score = 141 (54.7 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 137 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 195
A+ +E + R P R + +S K + ++R RGLP+ + DI FFK
Sbjct: 56 AMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLN 115
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 116 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 170
>UNIPROTKB|H0YBB3 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 Ensembl:ENST00000517610
Bgee:H0YBB3 Uniprot:H0YBB3
Length = 522
Score = 269 (99.8 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 72/206 (34%), Positives = 115/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 85 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 144
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 145 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 188
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 189 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 248
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 249 HKDLLGKRYIELFRSTAAEVQQVLNR 274
Score = 244 (91.0 bits), Expect = 5.9e-20, P = 5.9e-20
Identities = 67/210 (31%), Positives = 108/210 (51%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF I +LFV + + + TG+AF + A
Sbjct: 186 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 245
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + S P I + V
Sbjct: 246 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 305
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 306 I-RLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 364
Query: 230 AK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
K + + RY+E+F S EEM+ L G
Sbjct: 365 QKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 394
Score = 141 (54.7 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 137 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 195
A+ +E + R P R + +S K + ++R RGLP+ + DI FFK
Sbjct: 49 AMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLN 108
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 109 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 163
>UNIPROTKB|F1NNR6 [details] [associations]
symbol:LOC100858337 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:PVFLGPL EMBL:AADN02019509 EMBL:AADN02019510 IPI:IPI00571732
Ensembl:ENSGALT00000002400 Uniprot:F1NNR6
Length = 868
Score = 260 (96.6 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 80/243 (32%), Positives = 118/243 (48%)
Query: 28 PSFYGTP-PSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVL 86
P F G P + N + + P V + G+PF TE DV EFF GL VD +
Sbjct: 274 PLFIGPMNPVNPIQMNSQSSVKPIPINPDDLYVSIHGMPFSATESDVKEFFLGLR-VDAI 332
Query: 87 FVHKNN--KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN-EVS 143
+ K++ + G P AL+RNR M +RYVEV + +++ A +
Sbjct: 333 HMLKDHVGRNNGNGLVKFFSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFK 392
Query: 144 DVRG--GSPHRSIP----RAKSHDEGKDS---AVHT-GI-LRLRGLPFSAGKDDIMDFFK 192
G G PH P R+KS K S + H G + L+GLPF + ++DFFK
Sbjct: 393 QTMGPSGQPHPPPPQPHSRSKSPSGQKRSRSRSPHEQGFCVYLKGLPFESENKHVIDFFK 452
Query: 193 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 252
+ EDSI+I +G+ GE FVEF N D KAA+ + +G+R+I++ P + + M
Sbjct: 453 KLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITKKAML 512
Query: 253 EAL 255
E +
Sbjct: 513 EKI 515
Score = 163 (62.4 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 50/197 (25%), Positives = 95/197 (48%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRN 115
V L+GLPF+ V +FF LDIV D +++ N K GE F AL +
Sbjct: 433 VYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCHH 492
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK-DSAVHTGILR 174
+Q +G R+++V + KA+ ++ +R + + + + + +S
Sbjct: 493 KQYIGNRFIQVHPITK----KAMLEKIDLIRKRLQNFNYDQREIIMNAEAESGSPKLCAH 548
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+ +P++ K +I+ F + + E+S+ I ++++G+ G+A V+F +D++ A R
Sbjct: 549 ISNIPYNITKMEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAEDDARKAERLHRK 608
Query: 235 TLGSRYIELFPSSHEEM 251
L R + L + EEM
Sbjct: 609 KLNGRDVVLRLITVEEM 625
Score = 127 (49.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 116 (45.9 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 148 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207
G+ H S P GK +++++ +PF+ D+I+DFF + + S+ + N
Sbjct: 784 GNIHISGPPGFGTGSGKPGPT---VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNE 840
Query: 208 DGRPTGEAFVEFANAEDSKAAM 229
G PTGEA V F + +++ AA+
Sbjct: 841 KGMPTGEAMVAFESRDEAMAAV 862
Score = 83 (34.3 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 31/106 (29%), Positives = 44/106 (41%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP +D+ FF GL I D VH GEAF V + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG-GVHIVGGELGEAFIVFATDEDARLGMMRTGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
+ V + S + E I E+S R + + +P A + G
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI--ELSRRRFETANLDMPPANASRSG 106
Score = 44 (20.5 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 43 PPPAYG-YVSQPPPFPVVRLRGLP 65
PPP G + P P V GLP
Sbjct: 694 PPPGIGGFPDARPGIPAVASAGLP 717
Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVV-RLRGLP 65
P+F T PS++ N P PPP P + + LP
Sbjct: 169 PTFSSTVPSTASPMNTVP-------PPPIPPIPAMPSLP 200
Score = 40 (19.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 34 PPSSSFMYNPP-PAYGYVSQPPPFPVV 59
PP + PP P+ + PPP P +
Sbjct: 191 PPIPAMPSLPPMPSIPPIPVPPPVPTL 217
Score = 38 (18.4 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 34 PPSSSFMYNPPPAYG 48
PP+++ PPP+ G
Sbjct: 98 PPANASRSGPPPSSG 112
Score = 36 (17.7 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 34 PPSSSFMYNPP-PAYGYVSQPPPF-PVVRLRGLP 65
PP + PP P V PP P+ + G+P
Sbjct: 212 PPVPTLPPVPPVPPIPPVPPVPPMTPIPPISGMP 245
>MGI|MGI:1917326 [details] [associations]
symbol:Esrp1 "epithelial splicing regulatory protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917326 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH466538 SUPFAM:SSF53098 GO:GO:0043484
EMBL:AL772170 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K14947 EMBL:AK042164 EMBL:AK140848
EMBL:AK166376 EMBL:BC031468 EMBL:BC059280 IPI:IPI00377935
IPI:IPI00649037 IPI:IPI00828247 IPI:IPI00828788 IPI:IPI01027663
RefSeq:NP_918944.2 UniGene:Mm.387719 HSSP:Q9Z2X1
ProteinModelPortal:Q3US41 SMR:Q3US41 STRING:Q3US41 PaxDb:Q3US41
PRIDE:Q3US41 Ensembl:ENSMUST00000043781 Ensembl:ENSMUST00000108310
Ensembl:ENSMUST00000108313 Ensembl:ENSMUST00000147342
Ensembl:ENSMUST00000155519 GeneID:207920 KEGG:mmu:207920
UCSC:uc008rzk.2 UCSC:uc008rzl.2 UCSC:uc008rzm.2 UCSC:uc008rzn.1
InParanoid:Q3US41 NextBio:372085 Bgee:Q3US41 CleanEx:MM_RBM35A
Genevestigator:Q3US41 Uniprot:Q3US41
Length = 680
Score = 270 (100.1 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 72/206 (34%), Positives = 115/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 328
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 329 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 388
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 389 HKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 246 (91.7 bits), Expect = 6.5e-20, P = 6.5e-20
Identities = 67/210 (31%), Positives = 109/210 (51%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF I +LFV + + + TG+AF + A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+++++ +G+RY+E+FRS E + + S P I + V
Sbjct: 386 LRKHKELLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 445
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
I RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ + + + AA
Sbjct: 446 I-RLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRAFMAA 504
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ T+ RY+E+F S EEM+ L G
Sbjct: 505 QKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 534
>UNIPROTKB|Q5ZLR4 [details] [associations]
symbol:ESRP2 "Epithelial splicing regulatory protein 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043484
eggNOG:NOG262593 GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401
KO:K14947 HSSP:Q9Z2X1 EMBL:AJ719670 IPI:IPI00574410
RefSeq:NP_001025737.1 UniGene:Gga.9032 ProteinModelPortal:Q5ZLR4
SMR:Q5ZLR4 PRIDE:Q5ZLR4 Ensembl:ENSGALT00000005333 GeneID:415710
KEGG:gga:415710 CTD:80004 InParanoid:Q5ZLR4 OMA:VIKQKYE
OrthoDB:EOG49078K NextBio:20819270 Uniprot:Q5ZLR4
Length = 701
Score = 270 (100.1 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 70/206 (33%), Positives = 116/206 (56%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA Q D AL+R
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 286
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + + + S K++ V I+R
Sbjct: 287 HKHHMGSRYIEVYKATGEEFLK--------IAGGTSNE-VAQFLS----KENQV---IIR 330
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++D++ F ++ + DGRPTG+AFV F+ E ++ A+ K
Sbjct: 331 MRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNALKK 390
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 391 HKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 250 (93.1 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 66/211 (31%), Positives = 111/211 (52%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T+ DV F V +LFV + + + TG+AF + A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIPRAKSHDEGKDSAVHT 170
L+++++ +G+RY+E+FRS E + + +S + P IP ++
Sbjct: 388 LKKHKEILGKRYIELFRSTAAEVQQVLNRYMSTPLIPTLPTPIIPVIPPPYTIATGSIRD 447
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+ RLRGLP++AG DDI+DF D + +H+ +N GRP+G+AF++ +A+ +
Sbjct: 448 CV-RLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLNQQGRPSGDAFIQMKSADKAFMV 506
Query: 229 MAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
K + + RY+E+F S EEM+ L G
Sbjct: 507 AQKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 537
>RGD|1560481 [details] [associations]
symbol:Esrp1 "epithelial splicing regulatory protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISO;ISS] [GO:0005886 "plasma
membrane" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA;ISO;ISS] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1560481
GO:GO:0005886 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
EMBL:AABR03040708 EMBL:AABR03042124 EMBL:BC166735 IPI:IPI00929919
IPI:IPI00948834 RefSeq:NP_001121036.2 UniGene:Rn.161971
Ensembl:ENSRNOT00000067129 GeneID:500409 KEGG:rno:500409
UCSC:RGD:1560481 NextBio:706112 ArrayExpress:B2RYD2
Genevestigator:B2RYD2 Uniprot:B2RYD2
Length = 677
Score = 269 (99.8 bits), Expect = 2.2e-22, P = 2.2e-22
Identities = 72/206 (34%), Positives = 115/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 248 (92.4 bits), Expect = 3.9e-20, P = 3.9e-20
Identities = 69/214 (32%), Positives = 113/214 (52%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF I +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH-T 170
L++++ +G+RY+E+FRS E + + N S +P +P A V T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVL-NRFSS----APLIPLPTAPIIPVLPQQFVPPT 441
Query: 171 GI---LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+ +RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ + + +
Sbjct: 442 NVRDCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRA 501
Query: 226 -KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + T+ RY+E+F S EEM+ L G
Sbjct: 502 FMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 142 (55.0 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 137 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 195
A+ +E + R P R + +S K + ++R RGLP+ + DI FFK
Sbjct: 190 AMISEPYNHRFSDPERVNYKFESGTCSKTELIDGNTVVRARGLPWQSSDQDIARFFKGLN 249
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 250 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
>UNIPROTKB|F1LP81 [details] [associations]
symbol:Esrp1 "Epithelial-splicing regulatory protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1560481
GO:GO:0005886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
GeneTree:ENSGT00620000087828 IPI:IPI00558323
Ensembl:ENSRNOT00000010846 ArrayExpress:F1LP81 Uniprot:F1LP81
Length = 681
Score = 269 (99.8 bits), Expect = 2.2e-22, P = 2.2e-22
Identities = 72/206 (34%), Positives = 115/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 248 (92.4 bits), Expect = 4.0e-20, P = 4.0e-20
Identities = 69/214 (32%), Positives = 113/214 (52%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF I +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH-T 170
L++++ +G+RY+E+FRS E + + N S +P +P A V T
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVL-NRFSS----APLIPLPTAPIIPVLPQQFVPPT 441
Query: 171 GI---LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+ +RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ + + +
Sbjct: 442 NVRDCVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSTDRA 501
Query: 226 -KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + T+ RY+E+F S EEM+ L G
Sbjct: 502 FMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 142 (55.0 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 137 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 195
A+ +E + R P R + +S K + ++R RGLP+ + DI FFK
Sbjct: 190 AMISEPYNHRFSDPERVNYKFESGTCSKTELIDGNTVVRARGLPWQSSDQDIARFFKGLN 249
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 250 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
>UNIPROTKB|Q6NXG1 [details] [associations]
symbol:ESRP1 "Epithelial splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005886
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF53098
GO:GO:0043484 CTD:54845 eggNOG:NOG262593 KO:K14947 EMBL:BX647570
EMBL:AC108860 EMBL:AP005660 EMBL:BC019932 EMBL:BC067098
EMBL:BC099916 EMBL:BC112043 EMBL:AK000178 IPI:IPI00184262
IPI:IPI00654821 IPI:IPI00789651 IPI:IPI00797684 IPI:IPI00889741
RefSeq:NP_001030087.2 RefSeq:NP_001116297.1 RefSeq:NP_001116298.1
RefSeq:NP_001116299.1 RefSeq:NP_060167.2 UniGene:Hs.487471 PDB:2DHA
PDBsum:2DHA ProteinModelPortal:Q6NXG1 SMR:Q6NXG1 STRING:Q6NXG1
PhosphoSite:Q6NXG1 DMDM:124020999 PaxDb:Q6NXG1 PRIDE:Q6NXG1
Ensembl:ENST00000358397 Ensembl:ENST00000423620
Ensembl:ENST00000433389 Ensembl:ENST00000454170 GeneID:54845
KEGG:hsa:54845 UCSC:uc003ygq.4 UCSC:uc003ygr.4 UCSC:uc003ygt.4
UCSC:uc003ygv.3 GeneCards:GC08P095653 HGNC:HGNC:25966 HPA:HPA023719
HPA:HPA023720 MIM:612959 neXtProt:NX_Q6NXG1 PharmGKB:PA164719324
InParanoid:Q6NXG1 OMA:VAAMTEC ChiTaRS:ESRP1
EvolutionaryTrace:Q6NXG1 GenomeRNAi:54845 NextBio:57677
ArrayExpress:Q6NXG1 Bgee:Q6NXG1 CleanEx:HS_RBM35A
Genevestigator:Q6NXG1 Uniprot:Q6NXG1
Length = 681
Score = 269 (99.8 bits), Expect = 2.2e-22, P = 2.2e-22
Identities = 72/206 (34%), Positives = 115/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 244 (91.0 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 67/210 (31%), Positives = 108/210 (51%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF I +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + S P I + V
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRDC 446
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 447 I-RLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 230 AK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
K + + RY+E+F S EEM+ L G
Sbjct: 506 QKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 141 (54.7 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 137 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 195
A+ +E + R P R + +S K + ++R RGLP+ + DI FFK
Sbjct: 190 AMISEPYNHRFSDPERVNYKFESGTCSKMELIDDNTVVRARGLPWQSSDQDIARFFKGLN 249
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
+++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 250 IAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGED 304
>WB|WBGene00006367 [details] [associations]
symbol:sym-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0010172 "embryonic body morphogenesis"
evidence=IGI] [GO:0050879 "multicellular organismal movement"
evidence=IGI] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GO:GO:0010172 eggNOG:NOG262593 GeneTree:ENSGT00620000087828
KO:K14947 HSSP:P55795 EMBL:Z68319 EMBL:Z70038 EMBL:AY220985
PIR:T25208 RefSeq:NP_495960.2 UniGene:Cel.5905
ProteinModelPortal:Q22708 SMR:Q22708 IntAct:Q22708 STRING:Q22708
PaxDb:Q22708 EnsemblMetazoa:ZK1067.6 GeneID:174461
KEGG:cel:CELE_ZK1067.6 UCSC:ZK1067.6 CTD:174461 WormBase:ZK1067.6
HOGENOM:HOG000154473 InParanoid:Q22708 OMA:VENVMFT NextBio:884134
GO:GO:0050879 Uniprot:Q22708
Length = 618
Score = 267 (99.0 bits), Expect = 2.9e-22, P = 2.9e-22
Identities = 67/205 (32%), Positives = 114/205 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRN 115
+VR+RGLP+DCT+ + FF L + D +LF+ + + + TG+AF L ++
Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKH 341
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRA-KSHDEGKDSAVHTGILR 174
RQ +G+RY+E+F+S E + + ++ SP ++ A ++ +E K V R
Sbjct: 342 RQVIGQRYIELFKSTAAEVQQVVKR--CNLINSSP--AVANAVEAPEEKKKDCV-----R 392
Query: 175 LRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
LRGLP+ A I+ F DF ++ +H+ N+ G P+GEAF++ N + + A A
Sbjct: 393 LRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAASACAAGV 452
Query: 231 -KDRMTLGS--RYIELFPSSHEEMD 252
+ M++G RYIE+F +S EE++
Sbjct: 453 HNNFMSVGKKKRYIEVFQASAEELN 477
Score = 237 (88.5 bits), Expect = 5.0e-19, P = 5.0e-19
Identities = 69/205 (33%), Positives = 104/205 (50%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGY-----PLQVDFAL 112
V R RGLP+ ++ VA+FF GLDIV G A C+ + V F+
Sbjct: 182 VCRARGLPWQASDHHVAQFFAGLDIVP----------GGIALCLSSEGRRNGEVLVQFSS 231
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
Q +R +R+ S+ E YKA +E V GS ++ ++ A+ I
Sbjct: 232 QESRDLALKRHRNFLLSRYIEVYKAGLDEFMHVATGSSTEAMEFVSAN------AI---I 282
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+R+RGLP+ I FF+ L++ + IT +DGRPTG+AFV+F ED++ + K
Sbjct: 283 VRMRGLPYDCTDAQIRTFFEPLKLTDKILFIT-RTDGRPTGDAFVQFETEEDAQQGLLKH 341
Query: 233 RMTLGSRYIELFPSSHEEMDEALSR 257
R +G RYIELF S+ E+ + + R
Sbjct: 342 RQVIGQRYIELFKSTAAEVQQVVKR 366
>UNIPROTKB|I3L687 [details] [associations]
symbol:HNRNPH2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0015629 "actin cytoskeleton" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:MEANMTI
Ensembl:ENSSSCT00000030700 Uniprot:I3L687
Length = 437
Score = 185 (70.2 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 36/86 (41%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 178 (67.7 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 266 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 323
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 324 ATHEDAVAAMAKDKANMQHRYVELFLNS 351
Score = 133 (51.9 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D+A + G +RLRGLPF K++I+ FF + I N EAFV+FA+ E
Sbjct: 106 DTA-NDGFVRLRGLPFGCSKEEIVQFFS-------GLEIVPNGX-----EAFVQFASQEI 152
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEM 251
++ A+ K + +G RYIE+F SS E+
Sbjct: 153 AEKALKKHKERIGHRYIEIFKSSRAEV 179
Score = 132 (51.5 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
Score = 128 (50.1 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
VRLRGLPF C++ ++ +FF GL+IV N EAF + AL+++++
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVP------NGX---EAFVQFASQEIAEKALKKHKER 163
Query: 119 MGRRYVEVFRSKRQE 133
+G RY+E+F+S R E
Sbjct: 164 IGHRYIEIFKSSRAE 178
>UNIPROTKB|F1NWS6 [details] [associations]
symbol:GRSF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0009952 "anterior/posterior pattern
specification" evidence=IEA] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 EMBL:AADN02009154 IPI:IPI00602123
Ensembl:ENSGALT00000018869 OMA:ISTKREM Uniprot:F1NWS6
Length = 411
Score = 181 (68.8 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 39/91 (42%), Positives = 57/91 (62%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
Y S+ VV LRGLPFD TE D+A+FF GL I D+ FV++ + TGEA+ P V
Sbjct: 166 YESEVMSDGVVLLRGLPFDSTEDDIADFFAGLRITDMTFVYRGERKTGEAYVQFAAPEMV 225
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 139
AL R+++ M RY+EV+ S ++E + ++
Sbjct: 226 AKALLRHKEYMENRYIEVYISTKREMQRHLS 256
Score = 139 (54.0 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG-RPTGEAFVEFANAEDSKAAM 229
G++ LRGLPF + +DDI DFF +++ +T G R TGEA+V+FA E A+
Sbjct: 174 GVVLLRGLPFDSTEDDIADFFAGLRITD----MTFVYRGERKTGEAYVQFAAPEMVAKAL 229
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALS 256
+ + + +RYIE++ S+ EM LS
Sbjct: 230 LRHKEYMENRYIEVYISTKREMQRHLS 256
Score = 135 (52.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVE 218
+E +DS ++R G PF+ K ++M FF + E+ IH +N DGR G+A +E
Sbjct: 68 EENEDSVF---LIRAHGFPFACTKKEMMAFFDSCKIRNGENGIHFLLNRDGRRRGDALIE 124
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+ D + A+ K+ +G+RY+++ +++D L
Sbjct: 125 LESKADVQKALEKNLRYMGTRYVKVHEIHDKDVDGLL 161
Score = 123 (48.4 bits), Expect = 6.2e-22, Sum P(2) = 6.2e-22
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RG P DI+DFF L I I NSDG TGEA V F + +D+ AAMAK+
Sbjct: 331 VHVRGFPPQVSAQDIVDFFAP--LKPTRILIEYNSDGVATGEADVHFESYDDAVAAMAKE 388
Query: 233 RMTLGSRYIELF 244
R L +E+F
Sbjct: 389 RAQLQFGTVEVF 400
Score = 89 (36.4 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFAL 112
++R G PF CT+ ++ FF I + + F+ +++ + G+A L V AL
Sbjct: 76 LIRAHGFPFACTKKEMMAFFDSCKIRNGENGIHFLLNRDGRRRGDALIELESKADVQKAL 135
Query: 113 QRNRQNMGRRYVEV 126
++N + MG RYV+V
Sbjct: 136 EKNLRYMGTRYVKV 149
>UNIPROTKB|F1P509 [details] [associations]
symbol:ESRP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0043484 "regulation
of RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005886
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043484 GeneTree:ENSGT00620000087828 OMA:VAAMTEC
EMBL:AADN02024878 IPI:IPI00596521 Ensembl:ENSGALT00000025730
Uniprot:F1P509
Length = 523
Score = 261 (96.9 bits), Expect = 8.2e-22, P = 8.2e-22
Identities = 68/206 (33%), Positives = 114/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A+FF GL+I L ++ + GEA D ALQR
Sbjct: 140 VIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQR 199
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K ++ +G S + + S K++ V I+R
Sbjct: 200 HKHHMGNRYIEVYKATGEDFLK-----IAGAKGTS--NEVAQFLS----KENQV---IVR 245
Query: 175 LRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+ ++++ FF ++ + D RPTG+AFV FA E ++ A+ K
Sbjct: 246 MRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNALKK 305
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 306 HKDLLGKRYIELFRSTAAEVQQVLNR 331
Score = 245 (91.3 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 67/210 (31%), Positives = 111/210 (52%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF+ T +V FF + VLFV + +++ TG+AF + A
Sbjct: 243 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 302
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + S P I + V
Sbjct: 303 LKKHKDLLGKRYIELFRSTAAEVQQVLNRYSSTPLIPLPTPPILPVLPQQFVPPTNVRDC 362
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
I RLRGLP++A +DI++F +F + +H+ +N GRP+G+AF++ +A+ + AA
Sbjct: 363 I-RLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFLAA 421
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ T+ RY+E+F S EEM+ L G
Sbjct: 422 QRCHKKTMKDRYVEVFQCSAEEMNFVLMGG 451
>UNIPROTKB|Q6DEZ7 [details] [associations]
symbol:esrp1 "Epithelial splicing regulatory protein 1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0043484 "regulation of RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012337 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
SUPFAM:SSF53098 GO:GO:0043484 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 KO:K14947
OrthoDB:EOG42RD72 HSSP:P55795 EMBL:BC076946 RefSeq:NP_001005057.1
UniGene:Str.5962 ProteinModelPortal:Q6DEZ7 SMR:Q6DEZ7 PRIDE:Q6DEZ7
Ensembl:ENSXETT00000032125 GeneID:448608 KEGG:xtr:448608
Xenbase:XB-GENE-985138 InParanoid:Q6DEZ7 Bgee:Q6DEZ7 Uniprot:Q6DEZ7
Length = 687
Score = 263 (97.6 bits), Expect = 9.9e-22, P = 9.9e-22
Identities = 69/206 (33%), Positives = 114/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
++R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 330
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I D RPTG+AFV FA E ++ A+ K
Sbjct: 331 MRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNALKK 390
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 391 HKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 247 (92.0 bits), Expect = 5.2e-20, P = 5.2e-20
Identities = 67/211 (31%), Positives = 114/211 (54%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF V +LFV + +N+ TG+AF + A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT- 170
L+++++ +G+RY+E+FRS E + + N S P + P + V+
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVL-NRYSSAPL-IPLPTPPIIPVLPQPFIPPVNVR 445
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RLRGLP++A +DI++F +F + +H+ +N GRP+G++F++ +A+ + A
Sbjct: 446 DCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAYLA 505
Query: 229 MAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
K + T+ RY+E+F S EEM+ L G
Sbjct: 506 AQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 536
Score = 98 (39.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 36/119 (30%), Positives = 56/119 (47%)
Query: 44 PPAYGYVSQP--PPFPV---VRLRGLPFDCTEVDVAEFF--HGLDI----VDVLFVHKNN 92
PP + QP PP V +RLRGLP+ T D+ EF DI V ++ H+
Sbjct: 428 PPIIPVLPQPFIPPVNVRDCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGR 487
Query: 93 KFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
+G++F + + A Q+ +++ M RYVEVF+ +E + + G SP
Sbjct: 488 P-SGDSFIQMKSADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 545
Score = 63 (27.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 169 HTG-ILRLRGLPFSAGKDDIMDFFKDFVLS-EDSIHITMNSDGR 210
+TG ++R++GL +++G +I++FF+ + S ED + + +N R
Sbjct: 633 NTGAMVRMQGLAYNSGVKEILNFFQGYQYSPEDGL-LPVNDQAR 675
>UNIPROTKB|Q7ZY29 [details] [associations]
symbol:esrp1 "Epithelial splicing regulatory protein 1"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012337 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098 GO:GO:0043484
CTD:54845 KO:K14947 EMBL:BC044002 RefSeq:NP_001079524.1
UniGene:Xl.14515 HSSP:P55795 ProteinModelPortal:Q7ZY29 SMR:Q7ZY29
PRIDE:Q7ZY29 GeneID:379211 KEGG:xla:379211 Xenbase:XB-GENE-985143
Uniprot:Q7ZY29
Length = 688
Score = 263 (97.6 bits), Expect = 9.9e-22, P = 9.9e-22
Identities = 69/206 (33%), Positives = 114/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
++R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + + S K++ V I+R
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNE-VAQFLS----KENQV---IVR 330
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I D RPTG+AFV FA E ++ A+ K
Sbjct: 331 MRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNALKK 390
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 391 HKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 247 (92.0 bits), Expect = 5.2e-20, P = 5.2e-20
Identities = 67/211 (31%), Positives = 114/211 (54%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF V +LFV + +N+ TG+AF + A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT- 170
L+++++ +G+RY+E+FRS E + + N S P + P + V+
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEVQQVL-NRYSSAPL-IPLPTPPIIPVLPQPFIPPVNVR 445
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RLRGLP++A +DI++F +F + +H+ +N GRP+G++F++ +A+ + A
Sbjct: 446 DCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQMKSADRAYLA 505
Query: 229 MAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
K + T+ RY+E+F S EEM+ L G
Sbjct: 506 AQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 536
Score = 98 (39.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 36/119 (30%), Positives = 56/119 (47%)
Query: 44 PPAYGYVSQP--PPFPV---VRLRGLPFDCTEVDVAEFF--HGLDI----VDVLFVHKNN 92
PP + QP PP V +RLRGLP+ T D+ EF DI V ++ H+
Sbjct: 428 PPIIPVLPQPFIPPVNVRDCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGR 487
Query: 93 KFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
+G++F + + A Q+ +++ M RYVEVF+ +E + + G SP
Sbjct: 488 P-SGDSFIQMKSADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 545
Score = 67 (28.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 169 HTG-ILRLRGLPFSAGKDDIMDFFKDFVLS-EDSIHITMNSDGR 210
+TG ++R++GL +++G DI++FF+ + S ED + + +N R
Sbjct: 634 NTGAMVRMQGLAYNSGVKDILNFFQGYQYSPEDGL-LPVNDQAR 676
>ZFIN|ZDB-GENE-030131-9824 [details] [associations]
symbol:esrp2 "epithelial splicing regulatory
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0043484 "regulation of RNA
splicing" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-9824 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 eggNOG:NOG262593 HOGENOM:HOG000112401 KO:K14947
OrthoDB:EOG42RD72 HSSP:Q9Z2X1 CTD:80004 EMBL:BC045439 EMBL:BC065688
IPI:IPI00488983 IPI:IPI00769676 RefSeq:NP_954966.1 UniGene:Dr.200
ProteinModelPortal:Q7ZVR8 SMR:Q7ZVR8 STRING:Q7ZVR8 PRIDE:Q7ZVR8
GeneID:572992 KEGG:dre:572992 InParanoid:Q7ZVR8 NextBio:20891026
Uniprot:Q7ZVR8
Length = 736
Score = 261 (96.9 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 69/206 (33%), Positives = 115/206 (55%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D AL R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + + + S K++ + I+R
Sbjct: 285 HKHHMGSRYIEVYKATGEEFLK--------IAGGTSNE-VAQFLS----KENQM---IIR 328
Query: 175 LRGLPFSAGKDDIMDFF-KDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D++ F + +++ + + DGRPTG+AFV FA E ++ A+ K
Sbjct: 329 MRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNALKK 388
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 389 HKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 239 (89.2 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 64/215 (29%), Positives = 109/215 (50%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG-LDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T DV F + D +LFV + + + TG+AF + A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIPRAKSHDEGKDSAVHT 170
L++++Q +G+RY+E+FRS E + + +S + P P + T
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPPPPPMVSVPVLATPPFITT 445
Query: 171 G----ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAED 224
G +RLRGLP++A +DI++F + + +H+ +N GRP+G+AF++ +A+
Sbjct: 446 GNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQMKSADR 505
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ K + + RY+E+F S EEM L G
Sbjct: 506 AFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVLMGG 540
Score = 158 (60.7 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 34/94 (36%), Positives = 54/94 (57%)
Query: 157 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
A S E DS ++R RGLP+ + DI FFK +++ + + +N+ GR GEA
Sbjct: 213 ACSKTEAVDSET---VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEAL 269
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
V F N+E A+ + + +GSRYIE++ ++ EE
Sbjct: 270 VRFINSEHRDMALDRHKHHMGSRYIEVYKATGEE 303
Score = 121 (47.7 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 22/60 (36%), Positives = 41/60 (68%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R++GLP++AG DI+ FF+ + L DS+ + N G+ +GEA V F + + ++ A+A+
Sbjct: 660 LVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAVAE 719
Score = 102 (41.0 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 40/151 (26%), Positives = 69/151 (45%)
Query: 14 REMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGY-VSQPPPF-------PVVRLRGLP 65
R A+ Q+++++ + TP S+ PPP V PPF +RLRGLP
Sbjct: 402 RSTAAEVQQVLNR---YMSTPLISTLPPPPPPMVSVPVLATPPFITTGNTRDCIRLRGLP 458
Query: 66 FDCTEVDVAEFF--HGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNM 119
+ D+ EF H +DI + +++ + +G+AF + + Q+ +++ M
Sbjct: 459 YTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQMKSADRAFMVAQKCHKKMM 518
Query: 120 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
RYVEVF+ +E + + G SP
Sbjct: 519 KDRYVEVFQCSTEEMSFVLMGGTLNRSGLSP 549
Score = 36 (17.7 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 28 PSFYGTPPSSSF-MYNPPPAYGYVS 51
P TP + ++P PA+ Y S
Sbjct: 581 PPLLATPRTPQAPTHSPAPAFAYYS 605
>ZFIN|ZDB-GENE-070112-1732 [details] [associations]
symbol:esrp1 "epithelial splicing regulatory
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012337
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070112-1732 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 SUPFAM:SSF53098
GO:GO:0043484 EMBL:BC129044 EMBL:BC134218 IPI:IPI00829273
RefSeq:NP_001074045.1 UniGene:Dr.13001 ProteinModelPortal:A1L1G1
SMR:A1L1G1 STRING:A1L1G1 Ensembl:ENSDART00000103431 GeneID:560190
KEGG:dre:560190 CTD:54845 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 HOGENOM:HOG000112401 InParanoid:A4FVM7
KO:K14947 OMA:HIRQVIH OrthoDB:EOG42RD72 NextBio:20883322
Bgee:A1L1G1 Uniprot:A1L1G1
Length = 714
Score = 259 (96.2 bits), Expect = 2.9e-21, P = 2.9e-21
Identities = 68/206 (33%), Positives = 112/206 (54%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + S +++ + I+R
Sbjct: 286 HKHHMGGRYIEVYKATGEDFLK--------IAGGTSNE-VASFLS----RENQI---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A + ++ FF D I DGRPTG+AFV F+ E ++ A+ K
Sbjct: 330 MRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNALKK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L++
Sbjct: 390 HKDMLGKRYIELFKSTAAEVQQVLNK 415
Score = 240 (89.5 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 66/217 (30%), Positives = 114/217 (52%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-GLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF+ T V +FF + D +LFV + + TG+AF + A
Sbjct: 327 IVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR----GGSPHRSIPRAKSHDEGKDSA 167
L++++ +G+RY+E+F+S E + + N+ S SP S+ + +A
Sbjct: 387 LKKHKDMLGKRYIELFKSTAAEVQQVL-NKYSSAPLIPVAPSPILSVVAPPTFVP--QTA 443
Query: 168 VHTGI---LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANA 222
G+ +RLRGLP+ A DI+ F ++ + +H+ +N GRP+GEAF++ +A
Sbjct: 444 AVPGVRDCVRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQGRPSGEAFIQMRSA 503
Query: 223 EDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
E + AA + ++ RY+E+F S +E++ L G
Sbjct: 504 ERAFLAAQRCHKRSMKERYVEVFACSAQEVNIVLMGG 540
>WB|WBGene00020936 [details] [associations]
symbol:hrpf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:FO081084 GeneID:172395 KEGG:cel:CELE_W02D3.11 CTD:172395
RefSeq:NP_740877.1 ProteinModelPortal:Q9BIB7 SMR:Q9BIB7
DIP:DIP-24897N IntAct:Q9BIB7 MINT:MINT-1090704 STRING:Q9BIB7
PRIDE:Q9BIB7 EnsemblMetazoa:W02D3.11a.1 EnsemblMetazoa:W02D3.11a.2
UCSC:W02D3.11b WormBase:W02D3.11a HOGENOM:HOG000017293
InParanoid:Q9BIB7 OMA:EPYAQRE NextBio:875329 ArrayExpress:Q9BIB7
Uniprot:Q9BIB7
Length = 549
Score = 252 (93.8 bits), Expect = 9.1e-21, P = 9.1e-21
Identities = 66/198 (33%), Positives = 101/198 (51%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
V+ RGLP++ TE ++ +FF I + +N + +G+A V + AL+++R++
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDREH 66
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RSI---PRAKSHDEGKD-SAVHTGIL 173
+G RY+EVF + + E D RG H RS PR + D G S+ I+
Sbjct: 67 LGSRYIEVFPAGGAPTRRGDRGERGD-RGDRDHYRSRGAPPRDRYSDRGGPRSSGPDSIV 125
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
RLRGLPFS DI DF + D I + RP GEA+V F E + A +
Sbjct: 126 RLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQRHM 185
Query: 234 MTLGSRYIELFPSSHEEM 251
+G RYIE+F ++H ++
Sbjct: 186 KNIGHRYIEVFEATHRDL 203
Score = 140 (54.3 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 157 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD-GRPTGEA 215
++ D G H +LR+RG+PF A + D+ DFF + + + + + RP+G+A
Sbjct: 458 SRDRDYGAPQNQHF-VLRMRGVPFRASEADVYDFFHP--IRPNQVELLRDHQFQRPSGDA 514
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
V F N +D A+ KD+ +G RYIE+ P +
Sbjct: 515 RVIFYNRKDYDDALMKDKQYMGERYIEMIPDN 546
Score = 140 (54.3 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 42/132 (31%), Positives = 66/132 (50%)
Query: 4 RGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGY-------VSQPPPF 56
R ++ G E A+R+ S YG P Y+ P YGY Q F
Sbjct: 415 RDRYGSGGYASEPYAQREAGGAMRRSEYGRPDDR---YSKPEPYGYSRDRDYGAPQNQHF 471
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R+RG+PF +E DV +FFH + + V++L H+ + +G+A + D AL +
Sbjct: 472 -VLRMRGVPFRASEADVYDFFHPIRPNQVELLRDHQFQRPSGDARVIFYNRKDYDDALMK 530
Query: 115 NRQNMGRRYVEV 126
++Q MG RY+E+
Sbjct: 531 DKQYMGERYIEM 542
Score = 133 (51.9 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHKNNKFT--GEAFCVLGYPLQVDFA 111
P +VRLRGLPF T D+++F L IV D + + + GEA+ V A
Sbjct: 121 PDSIVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIA 180
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYK-AIANEVSDVR-GGSPHRSIPR 156
QR+ +N+G RY+EVF + ++ + A N++ R G P S P+
Sbjct: 181 KQRHMKNIGHRYIEVFEATHRDLSRFAEENDLRVPRFGPPPFASAPQ 227
Score = 42 (19.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 3 YRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPA------YGYVSQPP 54
Y K A + GRE G + + D S P S + +P A YGY S+ P
Sbjct: 304 YAPKTAYESYGRERGPDPRDVRDPRDSRMPDPRDSRALSDPYAAESRYSEYGYESREP 361
>FB|FBgn0023441 [details] [associations]
symbol:fus "fusilli" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007173 "epidermal
growth factor receptor signaling pathway" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0005634
GO:GO:0007173 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043484 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K14947 HSSP:P55795 EMBL:AF321979
EMBL:BT025963 EMBL:BT003299 EMBL:BT023793 EMBL:AY052064
RefSeq:NP_524691.1 RefSeq:NP_725479.1 RefSeq:NP_725480.1
RefSeq:NP_725481.1 RefSeq:NP_725482.1 RefSeq:NP_725483.1
UniGene:Dm.7727 ProteinModelPortal:Q9BJZ5 SMR:Q9BJZ5
MINT:MINT-1023688 STRING:Q9BJZ5 PRIDE:Q9BJZ5
EnsemblMetazoa:FBtr0087343 EnsemblMetazoa:FBtr0087344
EnsemblMetazoa:FBtr0087346 GeneID:44095 KEGG:dme:Dmel_CG8205
UCSC:CG8205-RD CTD:2521 FlyBase:FBgn0023441 InParanoid:A1ZA30
OMA:KFRYIEV OrthoDB:EOG4866TJ PhylomeDB:Q9BJZ5 ChiTaRS:FUS
GenomeRNAi:44095 NextBio:836730 Bgee:Q9BJZ5 Uniprot:Q9BJZ5
Length = 967
Score = 256 (95.2 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 71/210 (33%), Positives = 114/210 (54%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG+ + A++ K + V I+R
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIA-------GGASNE----AQAF-LSKGAQV---IIR 383
Query: 175 LRGLPFSAGKDDIMDFFKD------FVLS-EDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+RGLP+ A ++DFF VL + + DGR TG+AFV FAN D+
Sbjct: 384 MRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDAPK 443
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 444 ALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 34/94 (36%), Positives = 55/94 (58%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++ + E+S A
Sbjct: 548 IRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCA 606
Query: 231 KDR----MTLGS--RYIELFPSSHEEMDEALSRG 258
+ R M G RYIE+F S ++M+ L+ G
Sbjct: 607 QRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 640
>UNIPROTKB|B4DHY1 [details] [associations]
symbol:HNRNPH3 "cDNA FLJ57726, highly similar to
Heterogeneous nuclear ribonucleoprotein H3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
UniGene:Hs.643472 HGNC:HGNC:5043 ChiTaRS:HNRNPH3 EMBL:AC016395
EMBL:AK295316 IPI:IPI00908651 SMR:B4DHY1 STRING:B4DHY1
Ensembl:ENST00000441000 UCSC:uc010qiv.2 Uniprot:B4DHY1
Length = 238
Score = 179 (68.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 81 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 138
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 139 AVAAMSKDKNNMQHRYIELFLNS 161
Score = 76 (31.8 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAF 99
VRLRGLPF C++ ++ +FF G D + N + + F
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGYGGFDDYGGYNNYGYGNDGF 58
>ZFIN|ZDB-GENE-060421-3878 [details] [associations]
symbol:zgc:136953 "zgc:136953" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060421-3878 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 GeneTree:ENSGT00620000087736 OMA:PYDRPLG
OrthoDB:EOG49P9ZV EMBL:BX530068 IPI:IPI00485717 UniGene:Dr.76052
Ensembl:ENSDART00000057651 Ensembl:ENSDART00000113082
Uniprot:B8A5E1
Length = 396
Score = 234 (87.4 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 71/205 (34%), Positives = 104/205 (50%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VVR+RGLP+ CT+ +VA FF DIV K G V F + +
Sbjct: 9 VVRIRGLPWSCTQEEVASFFSDCDIV--------GKVNG-----------VCFTFSKEGR 49
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ S +++ KA+A + R HR I +S+ D + +G
Sbjct: 50 PSGEAFVELKSS--EDFKKALAKD----RKYMGHRYIEVFRSNRSEMDWVLKRSGPTDYD 103
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+LRLRGLPF K++I+ FF + + I + M+ GR TGEAFV+FA+ E ++
Sbjct: 104 GSSGCMLRLRGLPFGCSKEEIVQFFSGLKIVPNGITLPMDYQGRSTGEAFVQFASKEIAE 163
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS EM
Sbjct: 164 KALGKHKERIGHRYIEIFKSSRNEM 188
Score = 203 (76.5 bits), Expect = 8.2e-16, P = 8.2e-16
Identities = 40/88 (45%), Positives = 59/88 (67%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S ++++ FF D V + + T + +GRP+GEAFVE ++ED K A+
Sbjct: 9 VVRIRGLPWSCTQEEVASFFSDCDIVGKVNGVCFTFSKEGRPSGEAFVELKSSEDFKKAL 68
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
AKDR +G RYIE+F S+ EMD L R
Sbjct: 69 AKDRKYMGHRYIEVFRSNRSEMDWVLKR 96
Score = 173 (66.0 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 39/100 (39%), Positives = 58/100 (58%)
Query: 160 HDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 218
+ +S H+G + +RGLPF A + D+ FF L+ +HI M +G+ TGEA VE
Sbjct: 278 YSNDSNSGFHSGHFVHMRGLPFRATESDVAHFFGP--LTPVRVHIDMGPNGKSTGEADVE 335
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
F + ED+ +AM+KD+ + RYIELF +S + RG
Sbjct: 336 FRSHEDAVSAMSKDKNHMQHRYIELFLNSTSSGPSEMGRG 375
>FB|FBgn0259139 [details] [associations]
symbol:glo "glorund" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0006417
"regulation of translation" evidence=IMP;NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046427 "positive regulation of JAK-STAT cascade"
evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP] [GO:0043234
"protein complex" evidence=IPI] [GO:0060810 "intracellular mRNA
localization involved in pattern specification process"
evidence=IMP] [GO:0007311 "maternal specification of dorsal/ventral
axis, oocyte, germ-line encoded" evidence=IMP] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0042060 "wound healing" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0043234 GO:GO:0006417 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0042060 GO:GO:0046427
GO:GO:0051276 GO:GO:0045451 GO:GO:0007311
GeneTree:ENSGT00620000087828 KO:K12898 FlyBase:FBgn0259139
UniGene:Dm.4997 GeneID:41431 KEGG:dme:Dmel_CG6946 CTD:41431
GenomeRNAi:41431 NextBio:823816 EMBL:AY089465 RefSeq:NP_650120.1
RefSeq:NP_731639.1 SMR:Q9VGH5 IntAct:Q9VGH5 MINT:MINT-293245
STRING:Q9VGH5 EnsemblMetazoa:FBtr0089917 EnsemblMetazoa:FBtr0089919
UCSC:CG6946-RA InParanoid:Q9VGH5 OMA:NFGPIGG Uniprot:Q9VGH5
Length = 586
Score = 194 (73.4 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 61/203 (30%), Positives = 95/203 (46%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
VRLRGLP+ T ++ +F +++ + G A L +VD +N
Sbjct: 51 VRLRGLPWSATHKEILDFLENVNVTN-----------GSAGIHL-VTSRVD------GKN 92
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-ILRLRG 177
G YVEV + E + + R + P+ K S T +++LRG
Sbjct: 93 TGEAYVEVASQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAMRKISGHGTAFVVKLRG 152
Query: 178 LPFSAGKDDIMDFFK--DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 235
LP++ + I +FF D + I M+ GR TGEAFV+F + +D++ A+ ++R
Sbjct: 153 LPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQALGRNREK 212
Query: 236 LGSRYIELFPSSHEEMDEALSRG 258
+G RYIE+F SS EM A G
Sbjct: 213 IGHRYIEIFRSSIAEMKRATGAG 235
Score = 161 (61.7 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 39/85 (45%), Positives = 51/85 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI-VD---VLFV-HKNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ TE + EFF GLDI D +LFV + + TGEAF + AL
Sbjct: 147 VVKLRGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFESQDDTEQAL 206
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKA 137
RNR+ +G RY+E+FRS E +A
Sbjct: 207 GRNREKIGHRYIEIFRSSIAEMKRA 231
Score = 132 (51.5 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 475 GNDIEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 530
Query: 223 EDSKAAMAKDRMTLGSRYIELF 244
EDS+ AM + R +GSRYIELF
Sbjct: 531 EDSQVAMKRHREQMGSRYIELF 552
>UNIPROTKB|E5RGV0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00974526
ProteinModelPortal:E5RGV0 SMR:E5RGV0 Ensembl:ENST00000519056
ArrayExpress:E5RGV0 Bgee:E5RGV0 Uniprot:E5RGV0
Length = 155
Score = 183 (69.5 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 54 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 112
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEM 251
++ A+ K + +G RYIE+F SS E+
Sbjct: 113 AEKALKKHKERIGHRYIEIFKSSRAEV 139
Score = 153 (58.9 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 61 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 120
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 121 KERIGHRYIEIFKSSRAE 138
Score = 57 (25.1 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 58 VVRLRGLPFDCTEVDVAEFF 77
VV++RGLP+ C+ +V FF
Sbjct: 12 VVKVRGLPWSCSADEVQRFF 31
>UNIPROTKB|H0YB39 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
PRIDE:H0YB39 Ensembl:ENST00000521173 Bgee:H0YB39 Uniprot:H0YB39
Length = 277
Score = 174 (66.3 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 153 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 210
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 211 ATHEDAVAAMSKDKANMQHRYVELFLNS 238
Score = 121 (47.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 192 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+DF L + +S GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 7 EDFPLDVARKKLFSSSQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 66
Score = 88 (36.0 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 80 LDIV-DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 133
LD+ LF + TGEAF + AL+++++ +G RY+E+F+S R E
Sbjct: 11 LDVARKKLFSSSQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 65
>ZFIN|ZDB-GENE-040426-1856 [details] [associations]
symbol:hnrnph1 "heterogeneous nuclear
ribonucleoprotein H1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1856 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 CTD:3187 KO:K12898 InterPro:IPR012996
Pfam:PF08080 EMBL:CU855621 EMBL:CU658205 EMBL:BC065439
IPI:IPI00489200 RefSeq:NP_991247.1 UniGene:Dr.17640 SMR:Q6P0V0
Ensembl:ENSDART00000059918 GeneID:402984 KEGG:dre:402984
NextBio:20816791 Uniprot:Q6P0V0
Length = 403
Score = 210 (79.0 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 41/86 (47%), Positives = 59/86 (68%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S D++ FF + ++ + SIH T +GRP+GEAFVEF + ED K A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKIAV 67
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 68 KKDRETMGHRYVEVFKSNSVEMDWVL 93
Score = 196 (74.1 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 64/205 (31%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VVR+RGLP+ C+ +V FF I G + + F R +
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIAS----------NGTS---------IHFTYTREGR 48
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE F S +E K + + G HR + KS+ D + HTG
Sbjct: 49 PSGEAFVE-FES--EEDLKIAVKKDRETMG---HRYVEVFKSNSVEMDWVLKHTGPNCPE 102
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
++RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ + ++
Sbjct: 103 TGGDGLVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAE 162
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 163 KALKKHKERIGHRYIEIFKSSRAEV 187
Score = 173 (66.0 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A + DI +FF L+ +H+ + DGR TGEA VEF
Sbjct: 240 DSGSSFQSTTGHCVHMRGLPYRATETDIYNFFSP--LNPVRVHLEIGPDGRVTGEADVEF 297
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 298 ATHEDAVAAMSKDKANMQHRYVELFLNS 325
>ZFIN|ZDB-GENE-030131-275 [details] [associations]
symbol:hnrnph1l "heterogeneous nuclear
ribonucleoprotein H1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-275
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 OrthoDB:EOG4CRM03 InterPro:IPR012996
Pfam:PF08080 EMBL:BC044161 IPI:IPI00512644 RefSeq:NP_997754.1
UniGene:Dr.782 ProteinModelPortal:Q803W8 SMR:Q803W8 STRING:Q803W8
PRIDE:Q803W8 GeneID:321556 KEGG:dre:321556 CTD:321556
InParanoid:Q803W8 NextBio:20807425 ArrayExpress:Q803W8 Bgee:Q803W8
Uniprot:Q803W8
Length = 407
Score = 208 (78.3 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 67/205 (32%), Positives = 104/205 (50%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VVR+RGLP+ C+ +V+ FF G I +N G A + F R +
Sbjct: 8 VVRVRGLPWSCSAEEVSRFFSGCKI-------SSN---GSA---------IHFTYTREGR 48
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K IA V R HR + KS++ D + HTG
Sbjct: 49 PSGEAFVEL---ESEDDLK-IA--VKKDRESMGHRYVEVFKSNNVEMDWVLKHTGPNCPE 102
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
++RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ + ++
Sbjct: 103 TEGDGLVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAE 162
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 163 KALKKHKERIGHRYIEIFKSSRAEV 187
Score = 192 (72.6 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 37/86 (43%), Positives = 58/86 (67%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S +++ FF +S + +IH T +GRP+GEAFVE + +D K A+
Sbjct: 8 VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAV 67
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RY+E+F S++ EMD L
Sbjct: 68 KKDRESMGHRYVEVFKSNNVEMDWVL 93
Score = 166 (63.5 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 160 HDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 218
+ +G + TG + +RGLP+ A + DI +FF L+ +HI + DGR TGEA VE
Sbjct: 242 YGDGGNFQSTTGHCVHMRGLPYRATEPDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVE 299
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSS 247
FA ED+ AAM+ D+ + RY+ELF +S
Sbjct: 300 FATHEDAVAAMSNDKANMQHRYVELFLNS 328
>UNIPROTKB|E2RB90 [details] [associations]
symbol:HNRNPF "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0000166
GO:GO:0003727 Gene3D:3.30.70.330 GO:GO:0043484 GO:GO:0071013
GeneTree:ENSGT00620000087736 KO:K12898 InterPro:IPR012996
Pfam:PF08080 CTD:3185 OMA:SDCTIRD EMBL:AAEX03015383
RefSeq:XP_848697.1 RefSeq:XP_856894.1 RefSeq:XP_856973.1
ProteinModelPortal:E2RB90 Ensembl:ENSCAFT00000011299 GeneID:477757
KEGG:cfa:477757 NextBio:20853178 Uniprot:E2RB90
Length = 414
Score = 208 (78.3 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 69/205 (33%), Positives = 100/205 (48%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV+LRGLP+ C+ DV F I D G A G V F R +
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHD-----------GAA----G----VHFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-----EGKDSA- 167
G +VE+ + A+ + R HR I KSH D G +SA
Sbjct: 53 QSGEAFVEL--ESEDDVKMALKKD----RESMGHRYIEVFKSHRTEMDWVLKHSGPNSAD 106
Query: 168 -VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+ G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS EE+
Sbjct: 167 KALGKHKERIGHRYIEVFKSSQEEV 191
Score = 182 (69.1 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
>UNIPROTKB|F1RG16 [details] [associations]
symbol:HNRNPF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
KO:K12898 InterPro:IPR012996 Pfam:PF08080 CTD:3185 OMA:SDCTIRD
EMBL:CU468599 RefSeq:XP_001929089.1 RefSeq:XP_003359253.1
RefSeq:XP_003483523.1 UniGene:Ssc.93755 Ensembl:ENSSSCT00000011169
GeneID:100155475 KEGG:ssc:100155475 Uniprot:F1RG16
Length = 414
Score = 208 (78.3 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 69/205 (33%), Positives = 100/205 (48%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV+LRGLP+ C+ DV F I D G A G V F R +
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIRD-----------GAA----G----VHFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-----EGKDSA- 167
G +VE+ + A+ + R HR I KSH D G +SA
Sbjct: 53 QSGEAFVEL--ESEDDVKMALKKD----RESMGHRYIEVFKSHRTEMDWVLKHSGPNSAD 106
Query: 168 -VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+ G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS EE+
Sbjct: 167 KALGKHKERIGHRYIEVFKSSQEEV 191
Score = 182 (69.1 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 170 (64.9 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA +++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHDEAVAA 344
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
>UNIPROTKB|P52597 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043484 "regulation of RNA splicing" evidence=IDA;IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC;TAS] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0043484 GO:GO:0000398 GO:GO:0071013
EMBL:CH471160 EMBL:AL512654 HOGENOM:HOG000220896 HOVERGEN:HBG055557
HPA:HPA001359 HPA:HPA016884 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD EMBL:L28010 EMBL:AK001364 EMBL:BC001432 EMBL:BC004254
EMBL:BC015580 EMBL:BC016736 EMBL:BC106008 IPI:IPI00003881
PIR:S43484 RefSeq:NP_001091674.1 RefSeq:NP_001091675.1
RefSeq:NP_001091676.1 RefSeq:NP_001091677.1 RefSeq:NP_001091678.1
RefSeq:NP_004957.1 UniGene:Hs.712955 UniGene:Hs.808 PDB:2HGL
PDB:2HGM PDB:2HGN PDB:2KFY PDB:2KG0 PDB:2KG1 PDB:3TFY PDBsum:2HGL
PDBsum:2HGM PDBsum:2HGN PDBsum:2KFY PDBsum:2KG0 PDBsum:2KG1
PDBsum:3TFY ProteinModelPortal:P52597 SMR:P52597 IntAct:P52597
MINT:MINT-1157890 STRING:P52597 PhosphoSite:P52597 DMDM:1710628
OGP:P52597 PaxDb:P52597 PeptideAtlas:P52597 PRIDE:P52597 DNASU:3185
Ensembl:ENST00000337970 Ensembl:ENST00000356053
Ensembl:ENST00000357065 Ensembl:ENST00000443950
Ensembl:ENST00000544000 GeneID:3185 KEGG:hsa:3185 UCSC:uc001jar.2
GeneCards:GC10M043881 HGNC:HGNC:5039 MIM:601037 neXtProt:NX_P52597
PharmGKB:PA162391271 InParanoid:P52597 PhylomeDB:P52597
ChiTaRS:HNRNPF EvolutionaryTrace:P52597 GenomeRNAi:3185
NextBio:12654 ArrayExpress:P52597 Bgee:P52597 CleanEx:HS_HNRNPF
Genevestigator:P52597 GermOnline:ENSG00000169813 Uniprot:P52597
Length = 415
Score = 208 (78.3 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 69/205 (33%), Positives = 100/205 (48%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV+LRGLP+ C+ DV F I D G A G V F R +
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHD-----------GAA----G----VHFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-----EGKDSA- 167
G +VE+ + A+ + R HR I KSH D G +SA
Sbjct: 53 QSGEAFVEL--GSEDDVKMALKKD----RESMGHRYIEVFKSHRTEMDWVLKHSGPNSAD 106
Query: 168 -VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+ G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++
Sbjct: 107 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS EE+
Sbjct: 167 KALGKHKERIGHRYIEVFKSSQEEV 191
Score = 183 (69.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
>UNIPROTKB|Q60HC3 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9541 "Macaca fascicularis" [GO:0003727 "single-stranded RNA
binding" evidence=ISS] [GO:0043484 "regulation of RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043484 HOVERGEN:HBG055557 InterPro:IPR012996 Pfam:PF08080
EMBL:AB125204 EMBL:AB168246 ProteinModelPortal:Q60HC3 SMR:Q60HC3
PRIDE:Q60HC3 Uniprot:Q60HC3
Length = 415
Score = 208 (78.3 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 69/205 (33%), Positives = 100/205 (48%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV+LRGLP+ C+ DV F I D G A G V F R +
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHD-----------GAA----G----VHFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-----EGKDSA- 167
G +VE+ + A+ + R HR I KSH D G +SA
Sbjct: 53 QSGEAFVEL--GSEDDVKMALKKD----RESMGHRYIEVFKSHRTEMDWVLKHSGPNSAD 106
Query: 168 -VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+ G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++
Sbjct: 107 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS EE+
Sbjct: 167 KALGKHKERIGHRYIEVFKSSQEEV 191
Score = 183 (69.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
>UNIPROTKB|Q5E9J1 [details] [associations]
symbol:HNRNPF "Heterogeneous nuclear ribonucleoprotein F"
species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
evidence=ISS] [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0003727 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043484 HSSP:Q9Z2X1
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 EMBL:BT020929 EMBL:BC102955
IPI:IPI00685278 RefSeq:NP_001014860.1 UniGene:Bt.23170
ProteinModelPortal:Q5E9J1 SMR:Q5E9J1 STRING:Q5E9J1 PRIDE:Q5E9J1
Ensembl:ENSBTAT00000011658 GeneID:506917 KEGG:bta:506917 CTD:3185
eggNOG:NOG326351 InParanoid:Q5E9J1 OMA:SDCTIRD NextBio:20867801
Uniprot:Q5E9J1
Length = 414
Score = 207 (77.9 bits), Expect = 3.4e-16, P = 3.4e-16
Identities = 69/205 (33%), Positives = 102/205 (49%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV+LRGLP+ C+ DV F I D G V G V F R +
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHD-----------G----VAG----VHFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-----EGKDSA- 167
G +VE+ + ++ K + + G HR I KSH D G +SA
Sbjct: 53 QSGEAFVEL---ESEDDVKLALKKDRESMG---HRYIEVFKSHRTEMDWVLKHSGPNSAD 106
Query: 168 -VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+ G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS EE+
Sbjct: 167 KALGKHKERIGHRYIEVFKSSQEEV 191
Score = 181 (68.8 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
>MGI|MGI:2138741 [details] [associations]
symbol:Hnrnpf "heterogeneous nuclear ribonucleoprotein F"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2138741
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0003727
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0043484
HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD ChiTaRS:HNRNPF EMBL:AK076478 EMBL:BC018185
EMBL:BC025481 EMBL:BC027003 EMBL:BC029163 EMBL:BC029764
EMBL:BC033483 EMBL:BC089313 IPI:IPI00226073 IPI:IPI00798511
RefSeq:NP_001159899.1 RefSeq:NP_001159900.1 RefSeq:NP_001159901.1
RefSeq:NP_001159902.1 RefSeq:NP_001159903.1 RefSeq:NP_001159904.1
RefSeq:NP_598595.1 UniGene:Mm.422979 UniGene:Mm.476420 PDB:2DB1
PDBsum:2DB1 ProteinModelPortal:Q9Z2X1 SMR:Q9Z2X1 IntAct:Q9Z2X1
STRING:Q9Z2X1 PhosphoSite:Q9Z2X1 REPRODUCTION-2DPAGE:Q9Z2X1
PaxDb:Q9Z2X1 PRIDE:Q9Z2X1 Ensembl:ENSMUST00000035493
Ensembl:ENSMUST00000163168 Ensembl:ENSMUST00000167182
Ensembl:ENSMUST00000167657 Ensembl:ENSMUST00000170346
Ensembl:ENSMUST00000180020 Ensembl:ENSMUST00000180341 GeneID:98758
KEGG:mmu:98758 UCSC:uc009dle.2 InParanoid:Q9Z2X1
EvolutionaryTrace:Q9Z2X1 NextBio:353639 Bgee:Q9Z2X1
Genevestigator:Q9Z2X1 GermOnline:ENSMUSG00000042079 Uniprot:Q9Z2X1
Length = 415
Score = 206 (77.6 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 69/205 (33%), Positives = 102/205 (49%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV+LRGLP+ C+ DV F I D G V G V F R +
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHD-----------G----VAG----VHFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-----EGKDSA- 167
G +VE+ + ++ K + + G HR I KSH D G +SA
Sbjct: 53 QSGEAFVEL---ESEDDVKLALKKDRESMG---HRYIEVFKSHRTEMDWVLKHSGPNSAD 106
Query: 168 -VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+ G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++
Sbjct: 107 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS EE+
Sbjct: 167 KALGKHKERIGHRYIEVFKSSQEEV 191
Score = 180 (68.4 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
>RGD|620366 [details] [associations]
symbol:Hnrnpf "heterogeneous nuclear ribonucleoprotein F"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0043484 "regulation of RNA splicing"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:620366 GO:GO:0005634 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0043484 HSSP:Q9Z2X1 HOGENOM:HOG000220896 HOVERGEN:HBG055557
GeneTree:ENSGT00620000087736 KO:K12898 OrthoDB:EOG4CRM03
InterPro:IPR012996 Pfam:PF08080 CTD:3185 eggNOG:NOG326351
OMA:SDCTIRD EMBL:AB022209 EMBL:BC097275 EMBL:BC103634
IPI:IPI00210357 RefSeq:NP_001032362.1 RefSeq:NP_001032363.1
RefSeq:NP_001032364.1 RefSeq:NP_071792.1 UniGene:Rn.144596
ProteinModelPortal:Q794E4 SMR:Q794E4 IntAct:Q794E4 STRING:Q794E4
PhosphoSite:Q794E4 PRIDE:Q794E4 Ensembl:ENSRNOT00000019529
GeneID:64200 KEGG:rno:64200 UCSC:RGD:620366 InParanoid:Q794E4
NextBio:612884 Genevestigator:Q794E4 GermOnline:ENSRNOG00000014562
Uniprot:Q794E4
Length = 415
Score = 206 (77.6 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 69/205 (33%), Positives = 102/205 (49%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV+LRGLP+ C+ DV F I D G V G V F R +
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHD-----------G----VAG----VHFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH----D-----EGKDSA- 167
G +VE+ + ++ K + + G HR I KSH D G +SA
Sbjct: 53 QSGEAFVEL---ESEDDVKLALKKDRESMG---HRYIEVFKSHRTEMDWVLKHSGPNSAD 106
Query: 168 -VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+ G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++
Sbjct: 107 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS EE+
Sbjct: 167 KALGKHKERIGHRYIEVFKSSQEEV 191
Score = 180 (68.4 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 173 (66.0 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 39/79 (49%), Positives = 53/79 (67%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AA
Sbjct: 287 TGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAA 344
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+KDR + RYIELF +S
Sbjct: 345 MSKDRANMQHRYIELFLNS 363
>UNIPROTKB|G3N1Y9 [details] [associations]
symbol:G3N1Y9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
EMBL:DAAA02057210 Ensembl:ENSBTAT00000065958 Uniprot:G3N1Y9
Length = 426
Score = 156 (60.0 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLS-EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+ ++R LP+S D++ FF + + I +GR +G+AFVE + ++ K A+
Sbjct: 11 VAKVRSLPWSCSADEVQQFFDCKIQNGAQGIRFIYTREGRQSGKAFVELESEDEVKVALK 70
Query: 231 KDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RYIE+F S++ +MD L
Sbjct: 71 KDRETMGPRYIEVFKSNNADMDWVL 95
Score = 149 (57.5 bits), Expect = 7.9e-16, Sum P(2) = 7.9e-16
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RL GLPF K++++ FF + + I + ++ R TGEAFV FA+ E ++ A+
Sbjct: 109 GFVRLSGLPFGCSKEEMVQFFAGLEIVPNGITLQVDMQRRSTGEAFVWFASQEIAEMALK 168
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RY+ +F SS E+
Sbjct: 169 KHKERIGRRYMGIFKSSRAEV 189
Score = 145 (56.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRL GLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 111 VRLSGLPFGCSKEEMVQFFAGLEIVPNGITLQVDMQRRSTGEAFVWFASQEIAEMALKKH 170
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +GRRY+ +F+S R E
Sbjct: 171 KERIGRRYMGIFKSSRAE 188
Score = 111 (44.1 bits), Expect = 7.9e-16, Sum P(2) = 7.9e-16
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-----HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
V ++R LP+ C+ +V +FF +G + ++ + + +G+AF L +V AL
Sbjct: 11 VAKVRSLPWSCSADEVQQFFDCKIQNGAQGIRFIYTREGRQ-SGKAFVELESEDEVKVAL 69
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RY+EVF+S +
Sbjct: 70 KKDRETMGPRYIEVFKSNNAD 90
Score = 94 (38.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+H T +GR TGEA VEFA ED+ AA +KD+ + Y ELF S+
Sbjct: 305 VH-TETGNGRVTGEADVEFATHEDAVAATSKDKANMHHMY-ELFDSA 349
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 205 (77.2 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 74/226 (32%), Positives = 108/226 (47%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVL 86
P+ G P + PA+ + P P V+LRG PF+ TE +V EF L V +
Sbjct: 268 PAGTGLPALPACWVTEKPAH---QREPTTPHTVKLRGAPFNVTEKNVMEFLAPLKPVAIR 324
Query: 87 FVHK--NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 144
V NK TG F +V ALQ NR+ MG RY+EVFR K KA +
Sbjct: 325 IVRNAHGNK-TGYVFVDFSSEEEVKKALQCNREYMGGRYIEVFREKSIPTAKAPPKNSTK 383
Query: 145 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHI 203
G R++ H+E +D A +G L +R LP+++ ++D+ F + LSE +H
Sbjct: 384 AWQG---RTLGE---HEEEEDLA-DSGRLFVRNLPYTSSEEDLEKLFSKYGPLSE--LHY 434
Query: 204 TMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247
++S +P G AFV F E + A A+ D R + + PS+
Sbjct: 435 PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 480
>UNIPROTKB|D6RBM0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HOGENOM:HOG000220896 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 IPI:IPI00964535 ProteinModelPortal:D6RBM0
SMR:D6RBM0 Ensembl:ENST00000505811 ArrayExpress:D6RBM0 Bgee:D6RBM0
Uniprot:D6RBM0
Length = 212
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
>UNIPROTKB|I3LFQ0 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087736 EMBL:FP476068
Ensembl:ENSSSCT00000027886 OMA:NDIANXH Uniprot:I3LFQ0
Length = 216
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H+ D++ G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+F
Sbjct: 7 HNGPNDAS--DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQF 64
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 65 ASKEIAENALGKHKERIGHRYIEIFRSSRSEI 96
Score = 157 (60.3 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 50/164 (30%), Positives = 76/164 (46%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL ++
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 116 RQNMGRRYVEVFRSKRQE---YYKAIANEVSDVRGGSPHRSIP-RAKSHDEGKDSAVHTG 171
++ +G RY+E+FRS R E +Y + R G R I R + G+ S
Sbjct: 78 KERIGHRYIEIFRSSRSEIKGFYDP-PRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDR- 135
Query: 172 ILRLRGLPFSAGKDDIMDF--FKDFVLSEDSIHITMNSDGRPTG 213
+R G + G D+ + ++ D M DGR G
Sbjct: 136 -MRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMR-DGRGMG 177
>UNIPROTKB|E1BB17 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087736 OMA:PYDRPLG
EMBL:DAAA02061815 IPI:IPI00696173 ProteinModelPortal:E1BB17
SMR:E1BB17 PRIDE:E1BB17 Ensembl:ENSBTAT00000019039 Uniprot:E1BB17
Length = 346
Score = 192 (72.6 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H+ D++ G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+F
Sbjct: 7 HNGPNDAS--DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQF 64
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 65 ASKEIAENALGKHKERIGHRYIEIFRSSRSEI 96
Score = 179 (68.1 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
Score = 157 (60.3 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 50/164 (30%), Positives = 76/164 (46%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL ++
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 116 RQNMGRRYVEVFRSKRQE---YYKAIANEVSDVRGGSPHRSIP-RAKSHDEGKDSAVHTG 171
++ +G RY+E+FRS R E +Y + R G R I R + G+ S
Sbjct: 78 KERIGHRYIEIFRSSRSEIKGFYDP-PRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDR- 135
Query: 172 ILRLRGLPFSAGKDDIMDF--FKDFVLSEDSIHITMNSDGRPTG 213
+R G + G D+ + ++ D M DGR G
Sbjct: 136 -MRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMR-DGRGMG 177
>UNIPROTKB|F1P8D3 [details] [associations]
symbol:HNRNPH3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OMA:PYDRPLG
EMBL:AAEX03002774 RefSeq:XP_536369.2 ProteinModelPortal:F1P8D3
Ensembl:ENSCAFT00000000525 GeneID:479227 KEGG:cfa:479227
Uniprot:F1P8D3
Length = 346
Score = 192 (72.6 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H+ D++ G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+F
Sbjct: 7 HNGPNDAS--DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQF 64
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 65 ASKEIAENALGKHKERIGHRYIEIFRSSRSEI 96
Score = 179 (68.1 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
Score = 157 (60.3 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 50/164 (30%), Positives = 76/164 (46%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL ++
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 116 RQNMGRRYVEVFRSKRQE---YYKAIANEVSDVRGGSPHRSIP-RAKSHDEGKDSAVHTG 171
++ +G RY+E+FRS R E +Y + R G R I R + G+ S
Sbjct: 78 KERIGHRYIEIFRSSRSEIKGFYDP-PRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDR- 135
Query: 172 ILRLRGLPFSAGKDDIMDF--FKDFVLSEDSIHITMNSDGRPTG 213
+R G + G D+ + ++ D M DGR G
Sbjct: 136 -MRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMR-DGRGMG 177
>UNIPROTKB|P31942 [details] [associations]
symbol:HNRNPH3 "Heterogeneous nuclear ribonucleoprotein H3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG262593 HOVERGEN:HBG055557 KO:K12898 EMBL:L32610
EMBL:AF132360 EMBL:AF132361 EMBL:AF132362 EMBL:AF132363
EMBL:AF132364 EMBL:AK091411 EMBL:AK291547 EMBL:AL117395
EMBL:BC004511 EMBL:BC039824 IPI:IPI00013877 IPI:IPI00216492
IPI:IPI00216493 IPI:IPI00216494 IPI:IPI00216495 IPI:IPI00216496
PIR:T17207 RefSeq:NP_036339.1 RefSeq:NP_067676.2 UniGene:Hs.643472
ProteinModelPortal:P31942 SMR:P31942 IntAct:P31942
MINT:MINT-5004191 STRING:P31942 PhosphoSite:P31942 DMDM:23503095
PaxDb:P31942 PRIDE:P31942 Ensembl:ENST00000265866
Ensembl:ENST00000354695 GeneID:3189 KEGG:hsa:3189 UCSC:uc001jnw.4
UCSC:uc001jnx.4 CTD:3189 GeneCards:GC10P070090 HGNC:HGNC:5043
HPA:HPA038264 MIM:602324 neXtProt:NX_P31942 PharmGKB:PA162391325
InParanoid:P31942 OMA:PYDRPLG OrthoDB:EOG49P9ZV PhylomeDB:P31942
ChiTaRS:HNRNPH3 GenomeRNAi:3189 NextBio:12680 ArrayExpress:P31942
Bgee:P31942 CleanEx:HS_HNRNPH3 Genevestigator:P31942
GermOnline:ENSG00000096746 Uniprot:P31942
Length = 346
Score = 192 (72.6 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H+ D++ G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+F
Sbjct: 7 HNGPNDAS--DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQF 64
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 65 ASKEIAENALGKHKERIGHRYIEIFRSSRSEI 96
Score = 179 (68.1 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
Score = 157 (60.3 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 50/164 (30%), Positives = 76/164 (46%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL ++
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 116 RQNMGRRYVEVFRSKRQE---YYKAIANEVSDVRGGSPHRSIP-RAKSHDEGKDSAVHTG 171
++ +G RY+E+FRS R E +Y + R G R I R + G+ S
Sbjct: 78 KERIGHRYIEIFRSSRSEIKGFYDP-PRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDR- 135
Query: 172 ILRLRGLPFSAGKDDIMDF--FKDFVLSEDSIHITMNSDGRPTG 213
+R G + G D+ + ++ D M DGR G
Sbjct: 136 -MRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMR-DGRGMG 177
>RGD|1310019 [details] [associations]
symbol:Hnrnph3 "heterogeneous nuclear ribonucleoprotein H3
(2H9)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:1310019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 EMBL:CH473988
GeneTree:ENSGT00620000087736 KO:K12898 CTD:3189 OrthoDB:EOG49P9ZV
IPI:IPI00372854 RefSeq:NP_001102002.1 UniGene:Rn.60652 SMR:D4ABK7
Ensembl:ENSRNOT00000032600 GeneID:361838 KEGG:rno:361838
UCSC:RGD:1310019 NextBio:677788 Uniprot:D4ABK7
Length = 346
Score = 192 (72.6 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H+ D++ G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+F
Sbjct: 7 HNGPNDAS--DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQF 64
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 65 ASKEIAENALGKHKERIGHRYIEIFRSSRSEI 96
Score = 179 (68.1 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
Score = 157 (60.3 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 50/164 (30%), Positives = 76/164 (46%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL ++
Sbjct: 18 VRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGKH 77
Query: 116 RQNMGRRYVEVFRSKRQE---YYKAIANEVSDVRGGSPHRSIP-RAKSHDEGKDSAVHTG 171
++ +G RY+E+FRS R E +Y + R G R I R + G+ S
Sbjct: 78 KERIGHRYIEIFRSSRSEIKGFYDP-PRRLLGQRPGPYDRPIGGRGGYYGAGRGSMYDR- 135
Query: 172 ILRLRGLPFSAGKDDIMDF--FKDFVLSEDSIHITMNSDGRPTG 213
+R G + G D+ + ++ D M DGR G
Sbjct: 136 -MRRGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDRMR-DGRGMG 177
>UNIPROTKB|F1NBV8 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00589313
Ensembl:ENSGALT00000009575 ArrayExpress:F1NBV8 Uniprot:F1NBV8
Length = 492
Score = 196 (74.1 bits), Expect = 8.5e-15, P = 8.5e-15
Identities = 59/195 (30%), Positives = 96/195 (49%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
VV++RGLP+ C+ +V FF I++ L + +T E G P FA +
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFI--YTRE-----GRPSGEAFAELESE 94
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+++ + + Y + + ++ H P S D D G +RLR
Sbjct: 95 EDVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTG-PN--SPDTAND-----GFVRLR 146
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K + +
Sbjct: 147 GLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERI 206
Query: 237 GSRYIELFPSSHEEM 251
G RYIE+F SS E+
Sbjct: 207 GHRYIEIFKSSRAEV 221
Score = 180 (68.4 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 102 KKDRETMGHRYVEVFKSNNVEMDWVL 127
Score = 175 (66.7 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 43/102 (42%), Positives = 58/102 (56%)
Query: 146 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205
RG S HR + VH +RGLP+ A ++DI +FF L+ +HI +
Sbjct: 292 RGMSDHRYGDGTSTFQSTTGHCVH-----MRGLPYRATENDIYNFFSP--LNPVRVHIEI 344
Query: 206 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 345 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 386
>UNIPROTKB|F1NJJ4 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00684493
Ensembl:ENSGALT00000034274 ArrayExpress:F1NJJ4 Uniprot:F1NJJ4
Length = 499
Score = 196 (74.1 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 59/195 (30%), Positives = 96/195 (49%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
VV++RGLP+ C+ +V FF I++ L + +T E G P FA +
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFI--YTRE-----GRPSGEAFAELESE 94
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+++ + + Y + + ++ H P S D D G +RLR
Sbjct: 95 EDVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTG-PN--SPDTAND-----GFVRLR 146
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K + +
Sbjct: 147 GLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERI 206
Query: 237 GSRYIELFPSSHEEM 251
G RYIE+F SS E+
Sbjct: 207 GHRYIEIFKSSRAEV 221
Score = 180 (68.4 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 102 KKDRETMGHRYVEVFKSNNVEMDWVL 127
Score = 172 (65.6 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AA
Sbjct: 317 TGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAA 374
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+KD+ + RY+ELF +S
Sbjct: 375 MSKDKANMQHRYVELFLNS 393
>UNIPROTKB|E7EN40 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00981333
ProteinModelPortal:E7EN40 SMR:E7EN40 Ensembl:ENST00000523137
ArrayExpress:E7EN40 Bgee:E7EN40 Uniprot:E7EN40
Length = 166
Score = 155 (59.6 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIE 242
KDR T+G RY+E
Sbjct: 72 KKDRETMGHRYVE 84
Score = 115 (45.5 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 91 NGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 143
Score = 114 (45.2 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVE 125
+++R+ MG RYVE
Sbjct: 72 KKDRETMGHRYVE 84
>UNIPROTKB|F1NJJ5 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:AADN02028603 EMBL:AADN02028604
EMBL:AADN02028605 EMBL:AADN02028590 EMBL:AADN02028591
EMBL:AADN02028592 EMBL:AADN02028593 EMBL:AADN02028594
EMBL:AADN02028595 EMBL:AADN02028596 EMBL:AADN02028597
EMBL:AADN02028598 EMBL:AADN02028599 EMBL:AADN02028600
EMBL:AADN02028601 EMBL:AADN02028602 IPI:IPI00679403
Ensembl:ENSGALT00000034273 ArrayExpress:F1NJJ5 Uniprot:F1NJJ5
Length = 519
Score = 196 (74.1 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 59/195 (30%), Positives = 96/195 (49%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
VV++RGLP+ C+ +V FF I++ L + +T E G P FA +
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFI--YTRE-----GRPSGEAFAELESE 114
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+++ + + Y + + ++ H P S D D G +RLR
Sbjct: 115 EDVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTG-PN--SPDTAND-----GFVRLR 166
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K + +
Sbjct: 167 GLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERI 226
Query: 237 GSRYIELFPSSHEEM 251
G RYIE+F SS E+
Sbjct: 227 GHRYIEIFKSSRAEV 241
Score = 180 (68.4 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 121
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 122 KKDRETMGHRYVEVFKSNNVEMDWVL 147
Score = 172 (65.6 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AA
Sbjct: 337 TGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAA 394
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+KD+ + RY+ELF +S
Sbjct: 395 MSKDKANMQHRYVELFLNS 413
>UNIPROTKB|F1NEG6 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:AADN02028603
EMBL:AADN02028604 EMBL:AADN02028605 EMBL:AADN02028590
EMBL:AADN02028591 EMBL:AADN02028592 EMBL:AADN02028593
EMBL:AADN02028594 EMBL:AADN02028595 EMBL:AADN02028596
EMBL:AADN02028597 EMBL:AADN02028598 EMBL:AADN02028599
EMBL:AADN02028600 EMBL:AADN02028601 EMBL:AADN02028602
IPI:IPI00823306 Ensembl:ENSGALT00000040330 ArrayExpress:F1NEG6
Uniprot:F1NEG6
Length = 521
Score = 196 (74.1 bits), Expect = 9.6e-15, P = 9.6e-15
Identities = 59/195 (30%), Positives = 96/195 (49%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
VV++RGLP+ C+ +V FF I++ L + +T E G P FA +
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFI--YTRE-----GRPSGEAFAELESE 114
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+++ + + Y + + ++ H P S D D G +RLR
Sbjct: 115 EDVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTG-PN--SPDTAND-----GFVRLR 166
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K + +
Sbjct: 167 GLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERI 226
Query: 237 GSRYIELFPSSHEEM 251
G RYIE+F SS E+
Sbjct: 227 GHRYIEIFKSSRAEV 241
Score = 180 (68.4 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 121
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 122 KKDRETMGHRYVEVFKSNNVEMDWVL 147
Score = 172 (65.6 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AA
Sbjct: 339 TGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAA 396
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+KD+ + RY+ELF +S
Sbjct: 397 MSKDKANMQHRYVELFLNS 415
>UNIPROTKB|P55795 [details] [associations]
symbol:HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0015629 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 EMBL:U78027 EMBL:AL035422 GO:GO:0000398
EMBL:CH471115 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 HPA:HPA001359 HPA:HPA016884 KO:K12898
OrthoDB:EOG4CRM03 InterPro:IPR012996 Pfam:PF08080 CTD:3188
EMBL:U01923 EMBL:BC130343 EMBL:BC130345 IPI:IPI00026230
RefSeq:NP_001027565.1 RefSeq:NP_062543.1 UniGene:Hs.432485 PDB:1WEZ
PDB:1WG5 PDBsum:1WEZ PDBsum:1WG5 ProteinModelPortal:P55795
SMR:P55795 IntAct:P55795 MINT:MINT-2804293 STRING:P55795
PhosphoSite:P55795 DMDM:2500576 REPRODUCTION-2DPAGE:IPI00026230
PaxDb:P55795 PeptideAtlas:P55795 PRIDE:P55795 DNASU:3188
Ensembl:ENST00000316594 GeneID:3188 KEGG:hsa:3188 UCSC:uc004ehm.3
GeneCards:GC0XP100663 HGNC:HGNC:5042 HPA:CAB004436 MIM:300610
neXtProt:NX_P55795 PharmGKB:PA162391316 InParanoid:P55795
OMA:MEANMTI PhylomeDB:P55795 EvolutionaryTrace:P55795
GenomeRNAi:3188 NextBio:12674 ArrayExpress:P55795 Bgee:P55795
CleanEx:HS_HNRNPH2 Genevestigator:P55795 GermOnline:ENSG00000126945
Uniprot:P55795
Length = 449
Score = 193 (73.0 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N +G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKI--------QNGTSG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + +E K + + G HR + KS+ D + HTG
Sbjct: 53 PSGEAFVEL---ESEEEVKLALKKDRETMG---HRYVEVFKSNSVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 188 (71.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 37/86 (43%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 178 (67.7 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAMAKD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMAKDKANMQHRYVELFLNS 363
>UNIPROTKB|I3L816 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:CU915704
Ensembl:ENSSSCT00000031735 Uniprot:I3L816
Length = 423
Score = 192 (72.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 11 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 51
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 52 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 105
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 106 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 165
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 166 KALKKHKERIGHRYIEIFKSSRAEV 190
Score = 182 (69.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 11 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 71 KKDRETMGHRYVEVFKSNNVEMDWVL 96
Score = 174 (66.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 277 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 334
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 335 ATHEDAVAAMSKDKANMQHRYVELFLNS 362
>UNIPROTKB|E9PCY7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 IPI:IPI00908896
ProteinModelPortal:E9PCY7 SMR:E9PCY7 PRIDE:E9PCY7
Ensembl:ENST00000510411 ArrayExpress:E9PCY7 Bgee:E9PCY7
Uniprot:E9PCY7
Length = 429
Score = 192 (72.6 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>UNIPROTKB|E2R8D6 [details] [associations]
symbol:E2R8D6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:AAEX03007686
Ensembl:ENSCAFT00000000520 Uniprot:E2R8D6
Length = 439
Score = 192 (72.6 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>UNIPROTKB|P31943 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008266 "poly(U) RNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008266 GO:GO:0000166
GO:GO:0015629 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0043484
GO:GO:0000398 GO:GO:0071013 EMBL:CH471165 eggNOG:NOG262593
HOGENOM:HOG000220896 HOVERGEN:HBG055557 EMBL:L22009 EMBL:CR456778
EMBL:AK124530 EMBL:BC001348 IPI:IPI00013881 PIR:I39358
RefSeq:NP_001244222.1 RefSeq:NP_005511.1 UniGene:Hs.604001 PDB:2LXU
PDBsum:2LXU ProteinModelPortal:P31943 SMR:P31943 IntAct:P31943
MINT:MINT-1160934 STRING:P31943 PhosphoSite:P31943 DMDM:1710632
REPRODUCTION-2DPAGE:IPI00013881 REPRODUCTION-2DPAGE:P31943
PaxDb:P31943 PRIDE:P31943 Ensembl:ENST00000356731
Ensembl:ENST00000393432 Ensembl:ENST00000442819 GeneID:3187
KEGG:hsa:3187 UCSC:uc003mke.4 CTD:3187 GeneCards:GC05M179043
HGNC:HGNC:5041 HPA:HPA001359 HPA:HPA016884 MIM:601035
neXtProt:NX_P31943 PharmGKB:PA162391284 KO:K12898 OrthoDB:EOG4CRM03
ChiTaRS:HNRNPH1 GenomeRNAi:3187 NextBio:12670 ArrayExpress:P31943
Bgee:P31943 CleanEx:HS_HNRNPH1 Genevestigator:P31943
GermOnline:ENSG00000169045 InterPro:IPR012996 Pfam:PF08080
Uniprot:P31943
Length = 449
Score = 192 (72.6 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>UNIPROTKB|F2Z5H9 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0015629
"actin cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0071013 GeneTree:ENSGT00620000087736 CTD:3187
KO:K12898 InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:CU915704
RefSeq:XP_003123691.1 UniGene:Ssc.13767 ProteinModelPortal:F2Z5H9
SMR:F2Z5H9 PRIDE:F2Z5H9 Ensembl:ENSSSCT00000015317 GeneID:100519535
KEGG:ssc:100519535 Uniprot:F2Z5H9
Length = 449
Score = 192 (72.6 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>MGI|MGI:1891925 [details] [associations]
symbol:Hnrnph1 "heterogeneous nuclear ribonucleoprotein H1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1891925 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0043484 eggNOG:NOG262593 HOGENOM:HOG000220896
HOVERGEN:HBG055557 CTD:3187 KO:K12898 OrthoDB:EOG4CRM03
ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080 EMBL:Y14196
EMBL:BC056224 IPI:IPI00133916 RefSeq:NP_067485.1 UniGene:Mm.21740
ProteinModelPortal:O35737 SMR:O35737 IntAct:O35737 STRING:O35737
PhosphoSite:O35737 REPRODUCTION-2DPAGE:IPI00133916
REPRODUCTION-2DPAGE:O35737 PaxDb:O35737 PRIDE:O35737 DNASU:59013
Ensembl:ENSMUST00000069304 Ensembl:ENSMUST00000109142 GeneID:59013
KEGG:mmu:59013 NextBio:314564 Bgee:O35737 Genevestigator:O35737
GermOnline:ENSMUSG00000007850 Uniprot:O35737
Length = 449
Score = 192 (72.6 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>UNIPROTKB|G3V9Q3 [details] [associations]
symbol:Hnrph1 "Heterogeneous nuclear ribonucleoprotein H1,
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0015629
"actin cytoskeleton" evidence=IEA] [GO:0043484 "regulation of RNA
splicing" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:620840 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:CH473948
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
UniGene:Rn.23677 ProteinModelPortal:G3V9Q3 SMR:G3V9Q3 PRIDE:G3V9Q3
Ensembl:ENSRNOT00000059190 Uniprot:G3V9Q3
Length = 449
Score = 192 (72.6 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>UNIPROTKB|E1BF20 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 OMA:FSECKIQ EMBL:DAAA02018972
IPI:IPI00734138 Ensembl:ENSBTAT00000012357 Uniprot:E1BF20
Length = 472
Score = 192 (72.6 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>UNIPROTKB|G8JLB6 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0015629
"actin cytoskeleton" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 ProteinModelPortal:G8JLB6
SMR:G8JLB6 PRIDE:G8JLB6 Ensembl:ENST00000329433 OMA:FSECKIQ
PhylomeDB:G8JLB6 Bgee:G8JLB6 Uniprot:G8JLB6
Length = 472
Score = 192 (72.6 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 62/205 (30%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 174 (66.3 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 196 (74.1 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 79/263 (30%), Positives = 116/263 (44%)
Query: 9 EGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQP-----PPFP-VVRLR 62
EG++ E QG G P + P A G V +P P P V+LR
Sbjct: 242 EGSEEEEEEGSPASPAKQGGVSRGAVPG---VLRPQEAAGKVEKPVSQKEPTTPYTVKLR 298
Query: 63 GLPFDCTEVDVAEFFHGLDIVDVLFVHK--NNKFTGEAFCVLGYPLQVDFALQRNRQNMG 120
G PF+ TE +V EF L V + V NK TG F L +V AL+ NR MG
Sbjct: 299 GAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNK-TGYVFVDLSSEEEVKKALKCNRDYMG 357
Query: 121 RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 180
RY+EVFR K+ + + +G R +E ++ +G L +R L +
Sbjct: 358 GRYIEVFREKQAPTARGPPKSTTPWQG--------RTLGENEEEEDLADSGRLFVRNLSY 409
Query: 181 SAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG 237
++ ++D+ F + LSE +H ++S +P G AFV F E + A A+ D
Sbjct: 410 TSSEEDLEKLFSAYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 467
Query: 238 SRYIELFPSS--HEEMDEALSRG 258
R + + PS+ E EA + G
Sbjct: 468 GRMLHVLPSTIKKEASQEANAPG 490
>UNIPROTKB|D6RIU0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041
ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00967216
ProteinModelPortal:D6RIU0 SMR:D6RIU0 Ensembl:ENST00000504348
ArrayExpress:D6RIU0 Bgee:D6RIU0 Uniprot:D6RIU0
Length = 168
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 140 (54.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 52/182 (28%), Positives = 83/182 (45%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AA 228
A
Sbjct: 167 KA 168
>UNIPROTKB|D6RFM3 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
HOGENOM:HOG000134241 IPI:IPI00965435 ProteinModelPortal:D6RFM3
SMR:D6RFM3 Ensembl:ENST00000513225 ArrayExpress:D6RFM3 Bgee:D6RFM3
Uniprot:D6RFM3
Length = 163
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 138 (53.6 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 51/177 (28%), Positives = 80/177 (45%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 107 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQE 163
>UNIPROTKB|D6R9T0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00964846
ProteinModelPortal:D6R9T0 SMR:D6R9T0 Ensembl:ENST00000510431
HOGENOM:HOG000134241 ArrayExpress:D6R9T0 Bgee:D6R9T0 Uniprot:D6R9T0
Length = 162
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 133 (51.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNNVE 92
>UNIPROTKB|D6RAM1 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00967835
ProteinModelPortal:D6RAM1 SMR:D6RAM1 Ensembl:ENST00000515158
ArrayExpress:D6RAM1 Bgee:D6RAM1 Uniprot:D6RAM1
Length = 130
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 133 (51.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNNVE 92
>UNIPROTKB|D6RDU3 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00968132
ProteinModelPortal:D6RDU3 SMR:D6RDU3 Ensembl:ENST00000506721
ArrayExpress:D6RDU3 Bgee:D6RDU3 Uniprot:D6RDU3
Length = 171
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 133 (51.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNNVE 92
>UNIPROTKB|D6RIH9 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00966018
ProteinModelPortal:D6RIH9 SMR:D6RIH9 Ensembl:ENST00000510678
ArrayExpress:D6RIH9 Bgee:D6RIH9 Uniprot:D6RIH9
Length = 184
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 133 (51.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNNVE 92
>UNIPROTKB|D6RIT2 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
HOGENOM:HOG000134241 IPI:IPI00966932 ProteinModelPortal:D6RIT2
SMR:D6RIT2 Ensembl:ENST00000503105 ArrayExpress:D6RIT2 Bgee:D6RIT2
Uniprot:D6RIT2
Length = 164
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 133 (51.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNNVE 92
>UNIPROTKB|D6RJ04 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 HOGENOM:HOG000134241 IPI:IPI00963924
ProteinModelPortal:D6RJ04 SMR:D6RJ04 Ensembl:ENST00000508103
ArrayExpress:D6RJ04 Bgee:D6RJ04 Uniprot:D6RJ04
Length = 172
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 133 (51.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNNVE 92
>UNIPROTKB|E7EQJ0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00977852
ProteinModelPortal:E7EQJ0 SMR:E7EQJ0 Ensembl:ENST00000521116
ArrayExpress:E7EQJ0 Bgee:E7EQJ0 Uniprot:E7EQJ0
Length = 115
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 133 (51.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNNVE 92
>UNIPROTKB|E2RRS5 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:AAEX03015951 RefSeq:XP_544177.3
Ensembl:ENSCAFT00000014490 GeneID:487048 KEGG:cfa:487048
NextBio:20860720 Uniprot:E2RRS5
Length = 994
Score = 194 (73.4 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 62/210 (29%), Positives = 98/210 (46%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDV------RGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + Q++ + N V +V SP R I R +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEVDIPMRTEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 ---SAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
S G + L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D +A+ + L R + + P S ++M
Sbjct: 334 LKDYNSALGLHKTVLQYRPVHIDPVSRKQM 363
Score = 136 (52.9 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMRR 87
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 52/203 (25%), Positives = 87/203 (42%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNSALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIA-----NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
+ R V + R++ K I VS + H S ++ G+ ++
Sbjct: 346 TVLQYRPVHIDPVSRKQMLKFIECYEKKRPVSVEKERLGHVSQKYSQEGYPGQKLCIY-- 403
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMA 230
+R PF K ++ FF DF L ED I++ + G GEA V+F E + KA
Sbjct: 404 ---IRNFPFDVTKVEVQKFFADFSLGEDDIYLLYDDKGVGLGEALVKFKTEEQAVKAERL 460
Query: 231 KDRMTLGSRYIELFPSSHEEMDE 253
R LG+ + L S +M E
Sbjct: 461 NRRRFLGTEVL-LRLISEAQMQE 482
Score = 129 (50.5 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L LRGLP+ +DD+ FF L D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSG--LCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 122 (48.0 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 920 IKIMNLPFKANVNEILDFFHGYRILPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 979
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 980 NDR-PVGPRKVKL 991
Score = 98 (39.6 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 31/87 (35%), Positives = 40/87 (45%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG-GVHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSD 144
+ VE+F S + E K I +D
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMRRTD 89
Score = 38 (18.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPP 54
P + PP F PPP + +PP
Sbjct: 745 PEHFRRPPPEHFR-RPPPEH--FRRPP 768
Score = 37 (18.1 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 93 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 136
K T F L L DF R+ RR E FR R+E+++
Sbjct: 541 KQTQADFRQLDRSLPEDF---RHSPEDFRRSPEDFRRPREEHFR 581
>UNIPROTKB|I3L5T6 [details] [associations]
symbol:I3L5T6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
InterPro:IPR012996 Pfam:PF08080 EMBL:CU633293
Ensembl:ENSSSCT00000028833 Uniprot:I3L5T6
Length = 413
Score = 143 (55.4 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 33/87 (37%), Positives = 53/87 (60%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D+A + G + L+GL F K+ I+ FF + I + M+ +G+ TGEAFV+F + E
Sbjct: 105 DNA-NDGFVWLQGLLFGCTKEKIIQFFSGLEIMPIWITLPMDLEGKITGEAFVQFTSQEL 163
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEM 251
++ A+ + +G RYIE+F SS EE+
Sbjct: 164 AEKALGDRKERIGHRYIEVFKSSWEEV 190
Score = 121 (47.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V L+GL F CT+ + +FF GL+I+ + L + K TGEAF + AL
Sbjct: 112 VWLQGLLFGCTKEKIIQFFSGLEIMPIWITLPMDLEGKITGEAFVQFTSQELAEKALGDR 171
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+EVF+S +E
Sbjct: 172 KERIGHRYIEVFKSSWEE 189
Score = 115 (45.5 bits), Expect = 0.00038, P = 0.00038
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++L G+P+S +D+ +F + + IH +G + FVE + +D K A+
Sbjct: 12 VVKLCGVPWSCSFEDVQNFLSHCTIRGGAAGIHFICTREGGQN-DIFVELGSEDDVKMAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K+R ++G +Y E+F S EMD
Sbjct: 71 KKERGSMGHQYTEVFKSHRTEMD 93
Score = 101 (40.6 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
VV+L G+P+ C+ DV F I + F+ + F LG V AL+
Sbjct: 12 VVKLCGVPWSCSFEDVQNFLSHCTIRGGAAGIHFICTREGGQNDIFVELGSEDDVKMALK 71
Query: 114 RNRQNMGRRYVEVFRSKRQE 133
+ R +MG +Y EVF+S R E
Sbjct: 72 KERGSMGHQYTEVFKSHRTE 91
Score = 80 (33.2 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + LRGL ++ ++DI FF L+ +H + DGR EFA E+ AA
Sbjct: 286 TGHCIHLRGL-YT--ENDIYSFFSS--LNPVRVHTGIGPDGR----VISEFAIHEEDMAA 336
Query: 229 MAKDRMTLGSRYIELFPSS 247
++K R Y+ELF +S
Sbjct: 337 ISKHRANKQQSYMELFLNS 355
>UNIPROTKB|E5RGH4 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00982782
ProteinModelPortal:E5RGH4 SMR:E5RGH4 Ensembl:ENST00000521790
ArrayExpress:E5RGH4 Bgee:E5RGH4 Uniprot:E5RGH4
Length = 100
Score = 143 (55.4 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D+A + G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E
Sbjct: 29 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEI 87
Query: 225 SKAAMAKDRMTLG 237
++ A+ K + +G
Sbjct: 88 AEKALKKHKERIG 100
Score = 109 (43.4 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 36 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 95
Query: 116 RQNMG 120
++ +G
Sbjct: 96 KERIG 100
Score = 51 (23.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 119 MGRRYVEVFRSKRQE 133
MG RYVEVF+S E
Sbjct: 1 MGHRYVEVFKSNNVE 15
>UNIPROTKB|G3MYE8 [details] [associations]
symbol:G3MYE8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087736
EMBL:DAAA02039421 Ensembl:ENSBTAT00000065600 OMA:EVPRRIM
Uniprot:G3MYE8
Length = 248
Score = 179 (68.1 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 91 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 148
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 149 AVAAMSKDKNNMQHRYIELFLNS 171
>RGD|620840 [details] [associations]
symbol:Hnrph1 "heterogeneous nuclear ribonucleoprotein H1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:620840 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0006396 GO:GO:0043484
eggNOG:NOG262593 HSSP:P55795 HOGENOM:HOG000220896
HOVERGEN:HBG055557 KO:K12898 InterPro:IPR012996 Pfam:PF08080
EMBL:AF367468 EMBL:AABR03073723 EMBL:BC129087 IPI:IPI00202027
IPI:IPI00851133 IPI:IPI00851145 RefSeq:NP_543172.1 UniGene:Rn.23677
ProteinModelPortal:Q8VHV7 SMR:Q8VHV7 IntAct:Q8VHV7 STRING:Q8VHV7
PhosphoSite:Q8VHV7 World-2DPAGE:0004:Q8VHV7 PRIDE:Q8VHV7
GeneID:140931 KEGG:rno:140931 UCSC:RGD:620840 CTD:140931
NextBio:620799 ArrayExpress:Q8VHV7 Genevestigator:Q8VHV7
Uniprot:Q8VHV7
Length = 449
Score = 188 (71.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 61/205 (29%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF +++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 172 (65.6 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 40/88 (45%), Positives = 54/88 (61%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIETGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>UNIPROTKB|Q8VHV7 [details] [associations]
symbol:Hnrnph1 "Heterogeneous nuclear ribonucleoprotein H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:620840 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0006396 GO:GO:0043484 eggNOG:NOG262593 HSSP:P55795
HOGENOM:HOG000220896 HOVERGEN:HBG055557 KO:K12898
InterPro:IPR012996 Pfam:PF08080 EMBL:AF367468 EMBL:AABR03073723
EMBL:BC129087 IPI:IPI00202027 IPI:IPI00851133 IPI:IPI00851145
RefSeq:NP_543172.1 UniGene:Rn.23677 ProteinModelPortal:Q8VHV7
SMR:Q8VHV7 IntAct:Q8VHV7 STRING:Q8VHV7 PhosphoSite:Q8VHV7
World-2DPAGE:0004:Q8VHV7 PRIDE:Q8VHV7 GeneID:140931 KEGG:rno:140931
UCSC:RGD:620840 CTD:140931 NextBio:620799 ArrayExpress:Q8VHV7
Genevestigator:Q8VHV7 Uniprot:Q8VHV7
Length = 449
Score = 188 (71.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 61/205 (29%), Positives = 98/205 (47%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV++RGLP+ C+ +V FF I N G + F R +
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKI--------QNGAQG-----------IRFIYTREGR 52
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV-HTG----- 171
G +VE+ + ++ K + + G HR + KS++ D + HTG
Sbjct: 53 PSGEAFVEL---ESEDEVKLALKKDRETMG---HRYVEVFKSNNVEMDWVLKHTGPNSPD 106
Query: 172 -----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLPF +++I+ FF + + I + ++ GR TGEAFV+FA+ E ++
Sbjct: 107 TANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAE 166
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 167 KALKKHKERIGHRYIEIFKSSRAEV 191
Score = 182 (69.1 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 172 (65.6 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 40/88 (45%), Positives = 54/88 (61%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI DGR TGEA VEF
Sbjct: 278 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIETGPDGRVTGEADVEF 335
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 336 ATHEDAVAAMSKDKANMQHRYVELFLNS 363
>UNIPROTKB|F5GZT4 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 IPI:IPI00983613
ProteinModelPortal:F5GZT4 SMR:F5GZT4 PRIDE:F5GZT4
Ensembl:ENST00000511300 UCSC:uc011dgn.2 ArrayExpress:F5GZT4
Bgee:F5GZT4 Uniprot:F5GZT4
Length = 159
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 8 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 65
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 66 ATHEDAVAAMSKDKANMQHRYVELFLNS 93
>UNIPROTKB|H0YBD7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HGNC:HGNC:5041 ChiTaRS:HNRNPH1 InterPro:IPR012996 Pfam:PF08080
PRIDE:H0YBD7 Ensembl:ENST00000523921 Bgee:H0YBD7 Uniprot:H0YBD7
Length = 195
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 92 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 149
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 150 ATHEDAVAAMSKDKANMQHRYVELFLNS 177
>UNIPROTKB|H0YBG7 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
InterPro:IPR012996 Pfam:PF08080 PRIDE:H0YBG7
Ensembl:ENST00000519033 Bgee:H0YBG7 Uniprot:H0YBG7
Length = 185
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 40/88 (45%), Positives = 55/88 (62%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEF
Sbjct: 34 DGGSTFQSTTGHCVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEF 91
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 92 ATHEDAVAAMSKDKANMQHRYVELFLNS 119
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 189 (71.6 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 73/243 (30%), Positives = 110/243 (45%)
Query: 25 DQG-PSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV 83
+QG P+ PP + P +P V+LRG PF+ TE +V EF L V
Sbjct: 264 EQGMPAGKKRPPEARAETEKPANQ---KEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPV 320
Query: 84 DVLFVHK--NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK-AIAN 140
+ V NK TG F +V AL+ NR+ MG RY+EVFR K K A N
Sbjct: 321 AIRIVRNAHGNK-TGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKN 379
Query: 141 EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSED 199
+G R +E ++ +G L +R LP+++ ++D+ F + LSE
Sbjct: 380 TTKSWQG--------RILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE- 430
Query: 200 SIHITMNS-DGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSS--HEEMDEAL 255
+H ++S +P G AF+ F E + KA D R + + PS+ E ++A
Sbjct: 431 -LHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDAS 489
Query: 256 SRG 258
+ G
Sbjct: 490 ALG 492
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 189 (71.6 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 64/201 (31%), Positives = 96/201 (47%)
Query: 54 PPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK--NNKFTGEAFCVLGYPLQVDF 110
P P V+LRG PF+ TE +V EF L V + V NK TG F ++
Sbjct: 293 PTTPYTVKLRGAPFNVTEKNVLEFLAPLRPVAIRIVRNAHGNK-TGYIFVDFRSEEEIKQ 351
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKA-IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
AL+ NR+ MG RY+E+FR K K + N +G R +E ++
Sbjct: 352 ALKCNREYMGGRYIEIFREKNVPTTKGPLKNSAKPWQG--------RTLGENEEEEDLAD 403
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKA 227
+G L +R LP+++ ++D+ F F LSE +H ++S +P G AFV F E +
Sbjct: 404 SGRLFIRNLPYTSTEEDLQRLFSKFGPLSE--LHYPIDSLTKKPKGFAFVTFIFPEHAVR 461
Query: 228 AMAK-DRMTLGSRYIELFPSS 247
A A+ D R + + PS+
Sbjct: 462 AYAEVDGQVFQGRMLHVLPST 482
>UNIPROTKB|E1BMP6 [details] [associations]
symbol:E1BMP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
EMBL:DAAA02072842 IPI:IPI00699769 ProteinModelPortal:E1BMP6
Ensembl:ENSBTAT00000027332 Uniprot:E1BMP6
Length = 415
Score = 183 (69.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 63/194 (32%), Positives = 94/194 (48%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
+V+L GLP+ C+ DV F I D V VH G G Q+ LQ +
Sbjct: 12 LVKLHGLPWSCSVKDVQNFLSNCMIRDGVTCVHFIYSTEGRQS---GELHQLFLELQSDD 68
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
M + V S Y + + +++ H S P S D D G +RLR
Sbjct: 69 VKMALKKDRV--SMGHWYIEVFKSHRTEMELVLKH-SGPN--SGDSSSD-----GFVRLR 118
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLPF +DI+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K++ +
Sbjct: 119 GLPFGC-TEDIIQFFSGLEIMPNRITLPVDPEGKTTGEAFVQFASQELAEKALGKNKKRI 177
Query: 237 -GSRYIELFPSSHE 249
G RYIE+F SS E
Sbjct: 178 IGHRYIEVFNSSQE 191
Score = 151 (58.2 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + +RGLP+ A ++DI +F +L+ +HI + DGR T EA VEFA E++ A
Sbjct: 289 TGHCVHMRGLPYKATENDIYNFS---LLNPVRVHIEIGPDGRVTSEADVEFATHEEAMVA 345
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+K+R + RYIELF +S
Sbjct: 346 MSKNRANMQHRYIELFLNS 364
Score = 133 (51.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 29/89 (32%), Positives = 53/89 (59%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEA---FVEFANAEDSK 226
+++L GLP+S D+ +F + ++ + +H +++GR +GE F+E ++D K
Sbjct: 12 LVKLHGLPWSCSVKDVQNFLSNCMIRDGVTCVHFIYSTEGRQSGELHQLFLEL-QSDDVK 70
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
A+ KDR+++G YIE+F S EM+ L
Sbjct: 71 MALKKDRVSMGHWYIEVFKSHRTEMELVL 99
>MGI|MGI:1924854 [details] [associations]
symbol:Rbm12b2 "RNA binding motif protein 12 B2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1924854 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q8R4X3 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
HOGENOM:HOG000231575 HOVERGEN:HBG057691 OrthoDB:EOG4NKBVV
EMBL:AK080943 EMBL:AK169895 EMBL:AL772167 EMBL:BC030408
EMBL:BC080741 IPI:IPI00471450 IPI:IPI00828825 RefSeq:NP_945195.1
UniGene:Mm.474129 UniGene:Mm.483494 ProteinModelPortal:Q66JV4
SMR:Q66JV4 STRING:Q66JV4 PhosphoSite:Q66JV4 PRIDE:Q66JV4
Ensembl:ENSMUST00000063839 Ensembl:ENSMUST00000095143 GeneID:77604
KEGG:mmu:77604 UCSC:uc008san.2 CTD:77604 InParanoid:A2AJP4
NextBio:347196 Bgee:Q66JV4 CleanEx:MM_C430048L16RIK
Genevestigator:Q66JV4 Uniprot:Q66JV4
Length = 834
Score = 185 (70.2 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 61/210 (29%), Positives = 97/210 (46%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+ + H + + G+A + L+ +
Sbjct: 154 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSD---VRGG--SPHRSIP----RAKSHDEGK 164
R MG R++EV + Q++ + A E D +R SP R I R +SH +
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHSPSRRINGRHFRKRSHSKSP 273
Query: 165 DSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ + + + L+ L + K D+ + F+D L+ D I D R T AFV F N
Sbjct: 274 RARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKN 332
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S +EM
Sbjct: 333 QKDYNTALGLHKTVLQYRPVLIDPVSRKEM 362
Score = 142 (55.0 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 33/88 (37%), Positives = 48/88 (54%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 53/200 (26%), Positives = 85/200 (42%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + + D+ F D+ + + FV+K+ + T AF + + AL ++
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP-RA--KSHDEGKDSAVHTGIL 173
+ R V + R+E + I R S + P R K EG + +
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC-YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKLCI 403
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 404 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLNR 463
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 464 QRFLGIEVLLRLISEEQMQE 483
Score = 132 (51.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L LRGLP+ +DD+ FF L D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSG--LCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 117 (46.2 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 171 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ +A
Sbjct: 756 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSA 815
Query: 229 MAKDRM--TLGSRYIEL 243
+ KD +G R ++L
Sbjct: 816 V-KDLSGRPVGPRKVKL 831
Score = 99 (39.9 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 33/94 (35%), Positives = 42/94 (44%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDG-GVHIIGGKVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIA-NEVSDVRGGSP 150
+ VE+F S + E K I + V G P
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRP 96
Score = 40 (19.1 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 149
P Q F + ++++ R E FR R+E ++ +A+E D R S
Sbjct: 617 PSQEHFR-RSYQEHIRRPPQEHFRRSREEDFRHVADE--DFRQAS 658
>MGI|MGI:1919647 [details] [associations]
symbol:Rbm12b1 "RNA binding motif protein 12 B1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1919647 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q8R4X3 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
EMBL:AL929413 EMBL:AK013872 EMBL:AK031339 EMBL:BC050844
EMBL:BC054081 IPI:IPI00134417 RefSeq:NP_082502.2 UniGene:Mm.430709
UniGene:Mm.490798 ProteinModelPortal:Q80YR9 SMR:Q80YR9
STRING:Q80YR9 PhosphoSite:Q80YR9 PRIDE:Q80YR9
Ensembl:ENSMUST00000050069 Ensembl:ENSMUST00000069128 GeneID:72397
KEGG:mmu:72397 UCSC:uc008sam.1 CTD:72397 HOGENOM:HOG000231575
HOVERGEN:HBG057691 InParanoid:B1AZ74 OMA:EHFRRPP OrthoDB:EOG4NKBVV
NextBio:336186 Bgee:Q80YR9 Genevestigator:Q80YR9 Uniprot:Q80YR9
Length = 836
Score = 185 (70.2 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 61/210 (29%), Positives = 97/210 (46%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+ + H + + G+A + L+ +
Sbjct: 154 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSD---VRGG--SPHRSIP----RAKSHDEGK 164
R MG R++EV + Q++ + A E D +R SP R I R +SH +
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHSPSRRINGRHFRKRSHSKSP 273
Query: 165 DSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ + + + L+ L + K D+ + F+D L+ D I D R T AFV F N
Sbjct: 274 RARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKN 332
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S +EM
Sbjct: 333 QKDYNTALGLHKTVLQYRPVLIDPVSRKEM 362
Score = 142 (55.0 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 33/88 (37%), Positives = 48/88 (54%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 53/200 (26%), Positives = 85/200 (42%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + + D+ F D+ + + FV+K+ + T AF + + AL ++
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP-RA--KSHDEGKDSAVHTGIL 173
+ R V + R+E + I R S + P R K EG + +
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC-YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKLCI 403
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 404 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLNR 463
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 464 QRFLGIEVLLRLISEEQMQE 483
Score = 132 (51.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L LRGLP+ +DD+ FF L D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSG--LCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 114 (45.2 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 31/95 (32%), Positives = 48/95 (50%)
Query: 153 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 740 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 799
Query: 211 PTGEAFVEFANAEDSKAAMAKDRM--TLGSRYIEL 243
P GEA V N ++ AA+ KD +G R ++L
Sbjct: 800 PIGEAIVAMTNYNEALAAV-KDLSGRPVGPRKVKL 833
Score = 99 (39.9 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 33/94 (35%), Positives = 42/94 (44%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDG-GVHIIGGKVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIA-NEVSDVRGGSP 150
+ VE+F S + E K I + V G P
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRP 96
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 185 (70.2 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 65/250 (26%), Positives = 118/250 (47%)
Query: 9 EGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDC 68
E +G+E + + ++ S Y + +S + PA +P V+LRG PF+
Sbjct: 249 EEDEGKE---EEESIVQHADSAYESGEKTSSQKSTRPAI----EPTTEFTVKLRGAPFNV 301
Query: 69 TEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
E V EF L V + F + + + +G + L +V+ AL+ ++ MG RY+EVF
Sbjct: 302 KEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDKDYMGGRYIEVF 361
Query: 128 RSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDI 187
R+ +K N+ + ++ R DE ++ +G L +R +P++ ++D+
Sbjct: 362 RANN---FK---NDRRSAKRSEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDL 415
Query: 188 MDFF-KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245
+ F K LSE I + +P G AFV + E++ +A+A+ D T R + +
Sbjct: 416 KELFSKHGPLSEVLFPIDSLTK-KPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMA 474
Query: 246 S--SHEEMDE 253
S E+ D+
Sbjct: 475 SRLKKEKADQ 484
>RGD|1593040 [details] [associations]
symbol:LOC679087 "similar to swan" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1593040
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087828 OrthoDB:EOG4NKBVV CTD:389677
IPI:IPI00765757 RefSeq:XP_001053414.1 RefSeq:XP_232819.3
ProteinModelPortal:D3ZM54 Ensembl:ENSRNOT00000061333 GeneID:313069
KEGG:rno:313069 NextBio:665610 Uniprot:D3ZM54
Length = 843
Score = 176 (67.0 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 62/210 (29%), Positives = 94/210 (44%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+ + H + + G+A + L+ +
Sbjct: 154 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDV---RGG--SPHRSI------PRAKSHDE 162
R MG R++EV + Q++ + A++ D R SP R + R++S
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIEFGGTASKGGDTLHKRSEEHSPSRRLNDRYFWKRSRSKSP 273
Query: 163 GKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
S G + LR L K D+ F+D LS D I + D R T AFV F N
Sbjct: 274 RTRSRSPLGFYVHLRNLSLHTNKRDLRYLFRDTDLSNDQIKF-LYKDDRRTRYAFVMFKN 332
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S +EM
Sbjct: 333 QKDYNTALGLHKTVLQYRPVLIDPISRKEM 362
Score = 144 (55.7 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLPF AG DI FFK + + +H+ G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVI----GGKAGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIDMKR 87
Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 56/201 (27%), Positives = 88/201 (43%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V LR L + D+ F D+ + + F++K+++ T AF + + AL ++
Sbjct: 285 VHLRNLSLHTNKRDLRYLFRDTDLSNDQIKFLYKDDRRTRYAFVMFKNQKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP-RA--KSHDEGKDSAVHTGIL 173
+ R V + R+E K I R S P R K +EG + +
Sbjct: 345 TVLQYRPVLIDPISRKEMVKIIEC-YEKKRPESLEEERPGRVSQKYSEEGFPGSGQKLCI 403
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 404 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLSDDKGIGLGEALVRFKSEEQAMKAERLNR 463
Query: 234 MT-LGSRYIELFPSSHEEMDE 253
LG+ + L S E+M E
Sbjct: 464 QRFLGTEVL-LRLISEEQMQE 483
Score = 132 (51.5 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L LRGLP+ +DD+ FF L D + + + DGR G+A V+FA+ D+ +
Sbjct: 156 LFLRGLPYLVNEDDVRVFFSG--LCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R +GSR+IE+ S ++ E
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIE 234
Score = 119 (46.9 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 171 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ AA
Sbjct: 765 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVAMTNYNEALAA 824
Query: 229 MAKDRM--TLGSRYIEL 243
+ KD +G R ++L
Sbjct: 825 V-KDLSGRPVGPRKVKL 840
Score = 102 (41.0 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDG-GVHVIGGKAGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI 138
+ VE+F S + E K I
Sbjct: 63 FIKDSSVELFLSSKVEMQKTI 83
>UNIPROTKB|F1RY40 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:CU633952 RefSeq:XP_003125614.1
UniGene:Ssc.32661 Ensembl:ENSSSCT00000006702 GeneID:100514101
KEGG:ssc:100514101 Uniprot:F1RY40
Length = 986
Score = 183 (69.5 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 59/210 (28%), Positives = 96/210 (45%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N + D+ + S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAMKEDDIPMRTEEHSQPRGINDRHFRKRSHSKSPR 274
Query: 166 ---SAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
S G + L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S ++M
Sbjct: 334 LKDYNTALGLHKTVLQYRPVHIDPVSRKQM 363
Score = 137 (53.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 137 (53.3 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 56/203 (27%), Positives = 93/203 (45%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAK-SHDEGKDSAV-HTG--- 171
+ R V + R++ K I E + + P SI + K H K S ++G
Sbjct: 346 TVLQYRPVHIDPVSRKQMLKFI--ECYEKK--RP-ASIEKEKLGHISQKYSQEGYSGQKL 400
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMA 230
+ +R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA
Sbjct: 401 CIYIRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGIGLGEALVKFKSEEQAMKAERL 460
Query: 231 KDRMTLGSRYIELFPSSHEEMDE 253
R LG+ + L S +M E
Sbjct: 461 NRRRFLGTEVL-LRLISEVQMQE 482
Score = 129 (50.5 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L LRGLP+ +DD+ FF L D + + DGR G+A V+FA+ D+ +
Sbjct: 157 LFLRGLPYLVNEDDVRVFFSG--LCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R +GSR+IE+ S ++ E
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIE 235
Score = 121 (47.7 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 912 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 971
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 972 NDR-PVGPRKVKL 983
Score = 102 (41.0 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 32/90 (35%), Positives = 42/90 (46%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG-GVHIIGGEVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG 147
+ VE+F S + E K I + +D G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRMG 92
>UNIPROTKB|B9ZVT1 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010834 HOGENOM:HOG000231575
HGNC:HGNC:32310 IPI:IPI00217626 ProteinModelPortal:B9ZVT1
SMR:B9ZVT1 PRIDE:B9ZVT1 Ensembl:ENST00000517700 ArrayExpress:B9ZVT1
Bgee:B9ZVT1 Uniprot:B9ZVT1
Length = 881
Score = 182 (69.1 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 60/216 (27%), Positives = 100/216 (46%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 ---SAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
S G + L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 174 (66.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 53/187 (28%), Positives = 85/187 (45%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRL 175
+ R V + R++ K IA R GS R P S ++ + + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 136 (52.9 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 122 (48.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 807 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 866
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 867 NDR-PVGPRKVKL 878
Score = 102 (41.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 34/94 (36%), Positives = 44/94 (46%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG-GVHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSP 150
+ VE+F S + E K I + +D G G P
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRP 96
Score = 45 (20.9 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPP 55
P + PP F PPP + +PPP
Sbjct: 632 PEHFRRPPPEHFR-RPPPEH--FRRPPP 656
Score = 45 (20.9 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPP 55
P + PP F PPP + +PPP
Sbjct: 624 PEHFRRPPPEHFR-RPPPEH--FRRPPP 648
Score = 38 (18.4 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPP 54
P + PP F PPP + +PP
Sbjct: 640 PEHFRRPPPEHFR-RPPPEH--FRRPP 663
>UNIPROTKB|Q8IXT5 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG299235 EMBL:AC010834 HOGENOM:HOG000231575
HOVERGEN:HBG057691 OMA:EHFRRPP OrthoDB:EOG4NKBVV IPI:IPI00871780
RefSeq:NP_976324.2 UniGene:Hs.606916 HSSP:Q9NTZ6
ProteinModelPortal:Q8IXT5 SMR:Q8IXT5 IntAct:Q8IXT5 STRING:Q8IXT5
PhosphoSite:Q8IXT5 DMDM:215273872 PaxDb:Q8IXT5 PRIDE:Q8IXT5
Ensembl:ENST00000399300 GeneID:389677 KEGG:hsa:389677
UCSC:uc003yfz.3 CTD:389677 GeneCards:GC08M094813 H-InvDB:HIX0025665
HGNC:HGNC:32310 HPA:HPA024398 neXtProt:NX_Q8IXT5
PharmGKB:PA142671098 GenomeRNAi:389677 NextBio:103029
ArrayExpress:Q8IXT5 Bgee:Q8IXT5 CleanEx:HS_RBM12B
Genevestigator:Q8IXT5 Uniprot:Q8IXT5
Length = 1001
Score = 182 (69.1 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 60/216 (27%), Positives = 100/216 (46%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 ---SAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
S G + L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 174 (66.3 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 53/187 (28%), Positives = 85/187 (45%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-LRL 175
+ R V + R++ K IA R GS R P S ++ + + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 136 (52.9 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 122 (48.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
Score = 102 (41.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 34/94 (36%), Positives = 44/94 (46%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG-GVHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSP 150
+ VE+F S + E K I + +D G G P
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRP 96
Score = 45 (20.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPP 55
P + PP F PPP + +PPP
Sbjct: 752 PEHFRRPPPEHFR-RPPPEH--FRRPPP 776
Score = 45 (20.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPP 55
P + PP F PPP + +PPP
Sbjct: 744 PEHFRRPPPEHFR-RPPPEH--FRRPPP 768
Score = 45 (20.9 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPP 55
P + PP F PPP + +PPP
Sbjct: 736 PEHFRRPPPEHFR-RPPPEH--FRRPPP 760
Score = 38 (18.4 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPP 54
P + PP F PPP + +PP
Sbjct: 760 PEHFRRPPPEHFR-RPPPEH--FRRPP 783
>UNIPROTKB|F1P8D4 [details] [associations]
symbol:HNRNPH1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
EMBL:AAEX03018089 Ensembl:ENSCAFT00000000519 OMA:THEDAGA
Uniprot:F1P8D4
Length = 193
Score = 159 (61.0 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 38/88 (43%), Positives = 52/88 (59%)
Query: 161 DEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
D G TG + +RGLP+ A ++DI FF L+ +HI + GR GEA VEF
Sbjct: 77 DGGSSFQSTTGHCVHMRGLPYRATENDIYIFFSP--LNPVRVHIEIGPGGRVAGEADVEF 134
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A ED+ AAM+KD+ + RY+ELF +S
Sbjct: 135 ATHEDAGAAMSKDKANMQHRYVELFLNS 162
>ZFIN|ZDB-GENE-030131-6428 [details] [associations]
symbol:zgc:56148 "zgc:56148" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6428 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00620000087828 EMBL:BX321920
IPI:IPI00491398 Ensembl:ENSDART00000111912 ArrayExpress:E7F6E2
Bgee:E7F6E2 Uniprot:E7F6E2
Length = 665
Score = 179 (68.1 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 68/239 (28%), Positives = 108/239 (45%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPPFPV-VRLRGLPFDCTEVDVAEFFHGLDIVDVL 86
P G P SS+F G P V ++L G+PF T+ +V FF GL + D+L
Sbjct: 128 PEMRGRPASSTFSEARRQRDG--DAPERAEVYLKLTGMPFSATKDNVHNFFAGLKVDDIL 185
Query: 87 FVHKNNK--FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA----IAN 140
F+ KN + F+G + L+R+RQ MG RY+++ R +E+ K +A
Sbjct: 186 FL-KNPRGMFSGNSMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEEWLKEGGLIVAA 244
Query: 141 E------VSDVRGGSP--HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 192
+ V VR SP +RS R+ SH+E + LP K D+ F +
Sbjct: 245 DMRKRTPVERVRSRSPISYRSRSRSPSHEEY--------CIMFENLPPLVEKRDVRVFLQ 296
Query: 193 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
L +D I I + + A V F + D A +A ++ + ++ + + P S E+M
Sbjct: 297 PVALKDDQIIIFSSKKDDKSKSAVVVFRSLTDYCAGLAHNKEMMYNKVVYVSPISKEKM 355
Score = 127 (49.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 54/206 (26%), Positives = 87/206 (42%)
Query: 44 PPAYGYVSQPPPFP--VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEA 98
P +Y S+ P + LP + DV F + + D ++F K + + A
Sbjct: 260 PISYRSRSRSPSHEEYCIMFENLPPLVEKRDVRVFLQPVALKDDQIIIFSSKKDDKSKSA 319
Query: 99 FCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG---GSPHRSIP 155
V L N++ M + V V +++ + + + D RG GS RS
Sbjct: 320 VVVFRSLTDYCAGLAHNKEMMYNKVVYVSPISKEKMVTMLESSI-DARGEEKGS-RRSAE 377
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
++S DS + L +R LPF K +IMDFF + L+ED + + + G GEA
Sbjct: 378 ASQSQRNTPDSQLRC--LYVRNLPFDVRKVEIMDFFHGYALTEDRVILLRDERGAGLGEA 435
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYI 241
V F + K AM + G R++
Sbjct: 436 LVIF---QTEKEAMTGQSLN-GQRFL 457
Score = 124 (48.7 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GL +AG +DI +FF + + +HI G EAF+ FA+ ED++ AM++
Sbjct: 4 VIRLQGLRVTAGSEDIRNFFTGLRIPDGGVHII----GGELEEAFIIFASDEDARRAMSR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
+ + LF SS EM L
Sbjct: 60 SGGCIKGSTVNLFLSSKSEMQSVL 83
>UNIPROTKB|E1B7G5 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
OMA:EHFRRPP CTD:389677 EMBL:DAAA02039473 IPI:IPI00687016
RefSeq:XP_002692866.1 RefSeq:XP_881008.3 Ensembl:ENSBTAT00000017837
GeneID:506017 KEGG:bta:506017 NextBio:20867413 Uniprot:E1B7G5
Length = 984
Score = 178 (67.7 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 59/210 (28%), Positives = 95/210 (45%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSD------VRGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + +++ N + + +P R I R +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEKQWIDFGGNLIKEGDISMRTEEHTPPRGINDRHFRKRSHSKSPR 274
Query: 166 ---SAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
S G + L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RTCSRSPLGFYVHLKNLSVSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S E+M
Sbjct: 334 LKDYNTALGLHKTVLQYRPVYIDPVSREQM 363
Score = 136 (52.9 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAVSR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 132 (51.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 52/199 (26%), Positives = 85/199 (42%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSVSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAI-ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
+ R V + R++ K I E R ++ H + S I +
Sbjct: 346 TVLQYRPVYIDPVSREQMLKFIECYEKKRPASTEKERLGQVSQKHSQEGYSGQKLCIY-I 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF L+ED I + + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFSLAEDDICLLYDDKGVGLGEALVKFKSEEQAVKAERLNRRR 464
Query: 235 TLGSRYIELFPSSHEEMDE 253
LG+ + L S +M E
Sbjct: 465 FLGTEVL-LRLISEAQMQE 482
Score = 122 (48.0 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 910 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 969
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 970 NDR-PVGPRKVKL 981
Score = 100 (40.3 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 32/90 (35%), Positives = 42/90 (46%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG-GVHIIGGEIGEAFIIFATDEDARRAVSRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG 147
+ VE+F S + E K I + +D G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRMG 92
Score = 38 (18.4 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 21 QRLIDQGPSFYGTPPSSSFMYNPPPAY 47
+R+ D S S SF N PP Y
Sbjct: 493 ERMHDHSQSCDRDDHSHSFDSNDPPVY 519
Score = 37 (18.1 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPP 54
P + PP F PPP + + PP
Sbjct: 712 PEHFRRPPPEHFR-RPPPDH-FRRLPP 736
>UNIPROTKB|D6RDL0 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC136604
HOGENOM:HOG000220896 HGNC:HGNC:5041 ChiTaRS:HNRNPH1 IPI:IPI00964237
ProteinModelPortal:D6RDL0 SMR:D6RDL0 Ensembl:ENST00000515714
ArrayExpress:D6RDL0 Bgee:D6RDL0 Uniprot:D6RDL0
Length = 84
Score = 155 (59.6 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIE 242
KDR T+G RY+E
Sbjct: 72 KKDRETMGHRYVE 84
Score = 114 (45.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVE 125
+++R+ MG RYVE
Sbjct: 72 KKDRETMGHRYVE 84
>RGD|1310858 [details] [associations]
symbol:Grsf1 "G-rich RNA sequence binding factor 1"
species:10116 "Rattus norvegicus" [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0009952 "anterior/posterior pattern
specification" evidence=ISO] [GO:0016331 "morphogenesis of
embryonic epithelium" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1310858
GO:GO:0005739 GO:GO:0000166 GO:GO:0009952 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0016331 CTD:2926 eggNOG:NOG319259
HOGENOM:HOG000220896 OrthoDB:EOG4XPQGW IPI:IPI00364208
EMBL:BC103654 RefSeq:NP_001094360.1 UniGene:Rn.66912 GeneID:305256
KEGG:rno:305256 UCSC:RGD:1310858 InParanoid:Q3SYP9 NextBio:654276
ArrayExpress:Q3SYP9 Genevestigator:Q3SYP9 Uniprot:Q3SYP9
Length = 142
Score = 152 (58.6 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 40/93 (43%), Positives = 54/93 (58%)
Query: 157 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGE 214
A++ D G ++H + +RGLPF A DI++FF + ITM +S G+ TGE
Sbjct: 51 AEAVDFGAVPSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGE 104
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A V F ED+ AAM KDR + RYIELF +S
Sbjct: 105 ADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 137
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 169 (64.5 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 59/198 (29%), Positives = 98/198 (49%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN--KFTGEAFCVLGYPLQVDFALQRNR 116
V+LRG P + TE + EFF L + + + KN K TG F L +V AL+R +
Sbjct: 297 VKLRGAPLNVTEQKIREFFSPLKPLAIR-MGKNTQGKSTGFIFVDLKSEAEVQKALKRKK 355
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+ +G +YVEV R + + + + D P + R K DE ++ +G L +R
Sbjct: 356 EYIGGQYVEVSRCENAPK-ETVTAKTDD----QPWQ---RMKRDDEEEEDLSESGRLFVR 407
Query: 177 GLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DR 233
LPF++ ++D+ F + LSE IH ++ +P G AF+ + E + A A+ D
Sbjct: 408 NLPFTSTEEDLEKIFSKYGPLSE--IHFPIDRLTKKPKGFAFITYMIPEHAVKAYAEMDG 465
Query: 234 MTLGSRYIELFPSSHEEM 251
R + L PS+ +++
Sbjct: 466 QVFQGRMMHLLPSTIKKL 483
>UNIPROTKB|F1LV61 [details] [associations]
symbol:F1LV61 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00620000087736 InterPro:IPR012996 Pfam:PF08080
IPI:IPI00952226 ProteinModelPortal:F1LV61
Ensembl:ENSRNOT00000020819 Uniprot:F1LV61
Length = 408
Score = 161 (61.7 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 62/205 (30%), Positives = 93/205 (45%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV+L GLP+ C+ +V F I D G V+G V F R +
Sbjct: 13 VVKLLGLPWSCSIPEVQNFLSDCTIHD-----------G----VVG----VHFIYTREGR 53
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD---------SA- 167
G +V + + +E K E + G HR I K H G D SA
Sbjct: 54 QSGEAFV---KPESEEDVKLALKEDRESMG---HRYIEVFKPHRTGMDWVLKRSGPNSAY 107
Query: 168 -VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+ G + L+GLP K++ + FF + + + + +G+ TGEAFV+FA+ E ++
Sbjct: 108 SANDGFVSLQGLPCGCTKEEAIQFFSGLEIVPNGNTLPVYLEGKITGEAFVQFASQELAE 167
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A K + +G RYIE+F SS EE+
Sbjct: 168 KAFGKHKERIGHRYIEVFKSSQEEV 192
Score = 150 (57.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 170 TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
TG + RGLP+ A ++DI +FF L+ +H + DGR TGEA EFA E++ AA
Sbjct: 287 TGHCVHTRGLPYKATENDIYNFFSP--LNPVRVHTEIGPDGRVTGEADAEFATHEEAVAA 344
Query: 229 MAKDRMTLGSRYIELFPSS 247
M+KDR + RYI+LF +S
Sbjct: 345 MSKDR-AMQHRYIQLFLNS 362
Score = 150 (57.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 31/88 (35%), Positives = 50/88 (56%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++L GLP+S ++ +F D + + +H +GR +GEAFV+ + ED K A+
Sbjct: 13 VVKLLGLPWSCSIPEVQNFLSDCTIHDGVVGVHFIYTREGRQSGEAFVKPESEEDVKLAL 72
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
+DR ++G RYIE+F MD L R
Sbjct: 73 KEDRESMGHRYIEVFKPHRTGMDWVLKR 100
>RGD|1308928 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0040019 "positive regulation
of embryonic development" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473973 IPI:IPI00777247 Ensembl:ENSRNOT00000060041
UCSC:RGD:1308928 Uniprot:D3ZUN0
Length = 451
Score = 161 (61.7 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 60/183 (32%), Positives = 85/183 (46%)
Query: 43 PPPAYGYVSQP-----PPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK--NNKF 94
P A G V +P P P V+LRG PF+ TE +V EF L V + V NK
Sbjct: 274 PQEAAGKVEKPASQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNK- 332
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
TG F L +V AL+ NR+ MG RY+EVFR K + S RG S
Sbjct: 333 TGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREK----------QASAARGAPKSSSA 382
Query: 155 P-RAKS---HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
P + ++ H+E +D A +G L +R L +++ ++D+ F + + S G
Sbjct: 383 PWQGRTLGEHEEEEDLA-DSGRLFVRNLSYTSSEEDLEKLFSAYG-DQGQCGCAYGSGGD 440
Query: 211 PTG 213
P G
Sbjct: 441 PAG 443
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
++LRG PF+ + ++++F L +I I N+ G TG FV+ ++ E+ K A+ +
Sbjct: 296 VKLRGAPFNVTEKNVLEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKCN 353
Query: 233 RMTLGSRYIELF 244
R +G RYIE+F
Sbjct: 354 REYMGGRYIEVF 365
>UNIPROTKB|E5RI26 [details] [associations]
symbol:ESRP1 "Epithelial-splicing regulatory protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC108860
EMBL:AP005660 HGNC:HGNC:25966 ChiTaRS:ESRP1 IPI:IPI00889667
ProteinModelPortal:E5RI26 SMR:E5RI26 Ensembl:ENST00000522756
ArrayExpress:E5RI26 Bgee:E5RI26 Uniprot:E5RI26
Length = 94
Score = 140 (54.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 9 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 68
Query: 232 DRMTLGSRYIELFPSSHEE 250
+ +G+RYIE++ ++ E+
Sbjct: 69 HKHHMGTRYIEVYKATGED 87
Score = 137 (53.3 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 9 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 68
Query: 115 NRQNMGRRYVEVFRSKRQEYYK 136
++ +MG RY+EV+++ +++ K
Sbjct: 69 HKHHMGTRYIEVYKATGEDFLK 90
>WB|WBGene00022253 [details] [associations]
symbol:hrpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 EMBL:FO081731 eggNOG:NOG262593
GeneTree:ENSGT00620000087828 KO:K12898 RefSeq:NP_741422.1
ProteinModelPortal:Q8MXR2 SMR:Q8MXR2 DIP:DIP-24945N IntAct:Q8MXR2
MINT:MINT-1106723 STRING:Q8MXR2 PaxDb:Q8MXR2
EnsemblMetazoa:Y73B6BL.33 GeneID:177398 KEGG:cel:CELE_Y73B6BL.33
UCSC:Y73B6BL.33 CTD:177398 WormBase:Y73B6BL.33 HOGENOM:HOG000017787
InParanoid:Q8MXR2 OMA:QRMGRRY NextBio:896644 Uniprot:Q8MXR2
Length = 610
Score = 161 (61.7 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 38/101 (37%), Positives = 54/101 (53%)
Query: 158 KSHDEGKDSAVHTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 211
K DE + + +G +RLRGLPF+A + DI +FF + T GRP
Sbjct: 45 KEADESMPTKISSGEPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTT---GRP 101
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 252
GEA+VEF N E++ AM DR + +RYIE+F +E +
Sbjct: 102 NGEAYVEFKNTEEAGKAMENDRKEISNRYIEVFTVEADEAE 142
Score = 154 (59.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 49/159 (30%), Positives = 78/159 (49%)
Query: 107 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR-SIPRAKSHDEGKD 165
+V F R N G YVE F++ +E KA+ N+ ++ ++ ++ E +
Sbjct: 91 RVKFVCTTGRPN-GEAYVE-FKNT-EEAGKAMENDRKEISNRYIEVFTVEADEAEFEFRP 147
Query: 166 SAVHTG----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEF 219
G ++RLRG+P+S +DD+ FF+ I I T RP+GEAFV F
Sbjct: 148 DPDSNGEVNHVIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRF 207
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ ++ AM + +GSRY+E+F SS E + A G
Sbjct: 208 TTQDAAEKAMDYNNRHMGSRYVEVFMSSMVEFNRAKGGG 246
Score = 149 (57.5 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFA 111
+PP +RLRGLPF+ TE D+ EFF GL I V FV + GEA+ + A
Sbjct: 59 EPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVEFKNTEEAGKA 118
Query: 112 LQRNRQNMGRRYVEVFRSKRQE 133
++ +R+ + RY+EVF + E
Sbjct: 119 MENDRKEISNRYIEVFTVEADE 140
Score = 141 (54.7 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 47/156 (30%), Positives = 67/156 (42%)
Query: 37 SSFMYNPPP-AYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-----HK 90
+ F + P P + G V+ V+RLRG+P+ C E DV +FF GL+ V
Sbjct: 141 AEFEFRPDPDSNGEVNH-----VIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGP 195
Query: 91 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
++ +GEAF + A+ N ++MG RYVEVF S E+ +A +
Sbjct: 196 RSRPSGEAFVRFTTQDAAEKAMDYNNRHMGSRYVEVFMSSMVEFNRAKGGGSGEYSASYE 255
Query: 151 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 186
I S D G D G R + G DD
Sbjct: 256 RTGIRPLMSVDSGYDHGRRGGGGRYGDSSYDRGYDD 291
Score = 140 (54.3 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 47/144 (32%), Positives = 66/144 (45%)
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD 165
+ VD R+ G RY + + + Y N S GG R HD+G
Sbjct: 263 MSVDSGYDHGRRGGGGRYGDSSYDRGYDDY----NRGS--YGG--RRDYGYNGGHDQGGR 314
Query: 166 SAVHTG---ILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
S G LR +RGLP+ A I FF L S+ I +N GRP+G+A EF
Sbjct: 315 SDYGRGGDDPLRVYMRGLPYDADDHAIAAFFSP--LRCHSVKIGINETGRPSGDAIAEFD 372
Query: 221 NAEDSKAAMAKDRMTLGSRYIELF 244
N D + A++++ +G RY+ELF
Sbjct: 373 NYNDLQVALSRNNQRMGRRYVELF 396
>UNIPROTKB|F1NVJ4 [details] [associations]
symbol:RBM12B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:AADN02024868 IPI:IPI00599613 Ensembl:ENSGALT00000025676
ArrayExpress:F1NVJ4 Uniprot:F1NVJ4
Length = 415
Score = 158 (60.7 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 59/205 (28%), Positives = 99/205 (48%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
+ LR L + + D+ EFF LDI + + K+ + T +AF +L AL+ +
Sbjct: 26 IHLRNLSTNVEKRDLREFFPDLDISNKQIKILSEKHQRRTRDAFVMLKNERDYQAALECH 85
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIAN---EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
R+ + R V +F R+ K + + + S RG P ++I KS+ EG H+G+
Sbjct: 86 RKVLLNRSVYIFPISRKSMLKMLDSYERKRSQERG-HPGQAITE-KSYREG-----HSGL 138
Query: 173 LR---LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+R PF K ++ FF+ F + ED I++ + G GEA V+F + E + KA
Sbjct: 139 KMCAYVRNFPFDVTKVEVQRFFERFDIDEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAE 198
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDE 253
+ LG+ + L S E+M +
Sbjct: 199 NLNHQRFLGTEVL-LRLISEEQMQK 222
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 34/103 (33%), Positives = 50/103 (48%)
Query: 149 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 208
SP R R++S G++ +H LR L + K D+ +FF D +S I I
Sbjct: 8 SPRRQRTRSQS-PSGQEYYIH-----LRNLSTNVEKRDLREFFPDLDISNKQIKILSEKH 61
Query: 209 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
R T +AFV N D +AA+ R L +R + +FP S + M
Sbjct: 62 QRRTRDAFVMLKNERDYQAALECHRKVLLNRSVYIFPISRKSM 104
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK- 231
+RL+ LPF A ++I+DFF + + +S+ + N G P+G+A V N E++ A+ +
Sbjct: 341 IRLKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINEL 400
Query: 232 -DRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 401 NDR-PIGPRKVKL 412
>UNIPROTKB|E5RHG1 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00982580 ProteinModelPortal:E5RHG1
SMR:E5RHG1 Ensembl:ENST00000520560 ArrayExpress:E5RHG1 Bgee:E5RHG1
Uniprot:E5RHG1
Length = 122
Score = 136 (52.9 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 102 (41.0 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 34/94 (36%), Positives = 44/94 (46%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG-GVHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSP 150
+ VE+F S + E K I + +D G G P
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRP 96
>UNIPROTKB|E5RJ83 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00982018 ProteinModelPortal:E5RJ83
SMR:E5RJ83 Ensembl:ENST00000518597 ArrayExpress:E5RJ83 Bgee:E5RJ83
Uniprot:E5RJ83
Length = 143
Score = 136 (52.9 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00016
Identities = 34/94 (36%), Positives = 44/94 (46%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG-GVHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSP 150
+ VE+F S + E K I + +D G G P
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRP 96
>UNIPROTKB|E5RJV8 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00981453 ProteinModelPortal:E5RJV8
SMR:E5RJV8 Ensembl:ENST00000519109 ArrayExpress:E5RJV8 Bgee:E5RJV8
Uniprot:E5RJV8
Length = 149
Score = 136 (52.9 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 102 (41.0 bits), Expect = 0.00041, P = 0.00041
Identities = 34/94 (36%), Positives = 44/94 (46%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG-GVHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSP 150
+ VE+F S + E K I + +D G G P
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRP 96
>UNIPROTKB|E5RJW8 [details] [associations]
symbol:RBM12B "RNA-binding protein 12B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC010834
HGNC:HGNC:32310 IPI:IPI00980861 ProteinModelPortal:E5RJW8
SMR:E5RJW8 Ensembl:ENST00000521947 ArrayExpress:E5RJW8 Bgee:E5RJW8
Uniprot:E5RJW8
Length = 82
Score = 132 (51.5 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDE 253
+ +ELF SS EM +
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQK 81
Score = 93 (37.8 bits), Expect = 0.00041, P = 0.00041
Identities = 29/79 (36%), Positives = 37/79 (46%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG-GVHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYK 136
+ VE+F S + E K
Sbjct: 63 FIKDSSVELFLSSKAEMQK 81
>UNIPROTKB|H0YAM1 [details] [associations]
symbol:GRSF1 "G-rich sequence factor 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC021989
HGNC:HGNC:4610 ChiTaRS:GRSF1 PRIDE:H0YAM1 Ensembl:ENST00000506453
Bgee:H0YAM1 Uniprot:H0YAM1
Length = 114
Score = 87 (35.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193
KS V+ G++RLRGLP+S + DI+DFF D
Sbjct: 47 KSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAD 82
Score = 64 (27.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 93 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 133
K G+A + V AL+++R MG+RYVEV+ ++
Sbjct: 1 KRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 41
>UNIPROTKB|F2Z5W4 [details] [associations]
symbol:LOC100737162 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00620000087736 EMBL:CU468421
Ensembl:ENSSSCT00000011205 Uniprot:F2Z5W4
Length = 133
Score = 129 (50.5 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+HI + +DGR TGEA VEF ED+ AAM+KD+ + RYIELF +S
Sbjct: 10 VHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNS 56
>UNIPROTKB|A6PVI0 [details] [associations]
symbol:RBM12 "RNA-binding protein 12" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL109827
UniGene:Hs.700188 HGNC:HGNC:9898 IPI:IPI00852629 SMR:A6PVI0
STRING:A6PVI0 Ensembl:ENST00000431148 Uniprot:A6PVI0
Length = 143
Score = 127 (49.8 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
>UNIPROTKB|A6PVI1 [details] [associations]
symbol:RBM12 "RNA-binding protein 12" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL109827
UniGene:Hs.700188 HGNC:HGNC:9898 IPI:IPI00852859 SMR:A6PVI1
STRING:A6PVI1 Ensembl:ENST00000435161 Uniprot:A6PVI1
Length = 134
Score = 127 (49.8 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
>UNIPROTKB|H0YAQ2 [details] [associations]
symbol:HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:AC136604 HGNC:HGNC:5041 ChiTaRS:HNRNPH1
Ensembl:ENST00000519958 Bgee:H0YAQ2 Uniprot:H0YAQ2
Length = 131
Score = 114 (45.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+GEAFVE + ++ K A+ KDR T+G RY+E+F S++ EMD L
Sbjct: 1 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVL 44
Score = 89 (36.4 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 133
+GEAF L +V AL+++R+ MG RYVEVF+S E
Sbjct: 1 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVE 39
Score = 76 (31.8 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205
D+A + G +RLRGLPF K++I+ FF + S ++ + +
Sbjct: 53 DTA-NDGFVRLRGLPFGCSKEEIVQFFSGILKSLRAVELKL 92
>FB|FBgn0035235 [details] [associations]
symbol:CG7879 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:AE014296
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000381
GeneTree:ENSGT00620000087828 FlyBase:FBgn0035235 RefSeq:NP_647626.1
RefSeq:NP_728631.1 UniGene:Dm.21365 SMR:Q9W0D6 IntAct:Q9W0D6
MINT:MINT-286284 EnsemblMetazoa:FBtr0072826
EnsemblMetazoa:FBtr0072827 GeneID:38184 KEGG:dme:Dmel_CG7879
UCSC:CG7879-RA InParanoid:Q9W0D6 OMA:RAEMQKV GenomeRNAi:38184
NextBio:807399 Uniprot:Q9W0D6
Length = 985
Score = 140 (54.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 118 (46.6 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +R +PF A DIM FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 910 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFES 969
Query: 232 DR 233
R
Sbjct: 970 RR 971
Score = 98 (39.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 31/118 (26%), Positives = 53/118 (44%)
Query: 141 EVSDVRGGSPHR-SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 199
+VS GGSP S P+ T +R+ G+ + DI +F+ + +
Sbjct: 332 KVSPTMGGSPGGGSTPQV---------VADTCYIRMSGMCQNTSYSDIRKYFQGMYIPHN 382
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
I I M + R TG A+VEF+ ++ A+ ++ R I++ P +E + A R
Sbjct: 383 GIKIMMVNGSR-TGVAYVEFSRVSSAQKAVQRNNTMFRDRLIQIVPVGDDEFEMAEER 439
Score = 80 (33.2 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
++RL+ LP+ D+ FF GL I + VH G+AF A+ ++R+
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEG-GVHIIGGEMGDAFIAFSTDEDARCAMLKDRE 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI 138
+ V + S R E K I
Sbjct: 63 KLMEIQVRLLLSSRAEMQKVI 83
>UNIPROTKB|F1N0L5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:DAAA02045406 EMBL:DAAA02045407
EMBL:DAAA02045408 EMBL:DAAA02045409 EMBL:DAAA02045410
EMBL:DAAA02045411 EMBL:DAAA02045412 IPI:IPI00742584
Ensembl:ENSBTAT00000045133 Uniprot:F1N0L5
Length = 920
Score = 148 (57.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 56/181 (30%), Positives = 86/181 (47%)
Query: 72 DVAEFFHGLDIVDVLFVHK--NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129
+V EF L V + V NK TG F +V AL+ NR+ MG RY+EVFR
Sbjct: 270 NVMEFLAPLKPVAIRIVRNAHGNK-TGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRE 328
Query: 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 189
+ KA G P + + H+E +D A +G L +R LP+++ ++D+
Sbjct: 329 RNIPVAKAPLKN-----GAKPWQGRTLGE-HEEEEDLA-DSGRLFVRNLPYTSSEEDLEK 381
Query: 190 FFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246
F + +SE +H ++S +P G AFV F E + A A+ D R + + PS
Sbjct: 382 LFSRYGPVSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 439
Query: 247 S 247
+
Sbjct: 440 T 440
>WB|WBGene00013703 [details] [associations]
symbol:Y106G6D.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG299235 GeneTree:ENSGT00620000087828
EMBL:AL031629 PIR:B87957 PIR:T26417 RefSeq:NP_492671.1
ProteinModelPortal:Q9U304 SMR:Q9U304 DIP:DIP-26480N IntAct:Q9U304
MINT:MINT-1041092 STRING:Q9U304 PaxDb:Q9U304
EnsemblMetazoa:Y106G6D.7 GeneID:172878 KEGG:cel:CELE_Y106G6D.7
UCSC:Y106G6D.7 CTD:172878 WormBase:Y106G6D.7 HOGENOM:HOG000019591
InParanoid:Q9U304 OMA:YEASYPP NextBio:877371 Uniprot:Q9U304
Length = 948
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP +AG D+ FF + + ++HI G GE FV F++ +D++ AM K
Sbjct: 4 IIRLKNLPMTAGASDVRTFFTGLKIPDGAVHII----GGDEGEVFVGFSSDDDARLAMTK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALS 256
DR+ + + LF SS E + ++
Sbjct: 60 DRLMIHGAEVRLFLSSKSEQNSVIA 84
Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK-AAMA 230
+L G P +D+++FF D+ +SI I DG TGE + N E+++ A+M
Sbjct: 873 VLSCNGFPKDVTLEDVVEFFNDYEPDRNSIRIRRGDDGVMTGECMLACQNQENARRASMD 932
Query: 231 KDRMTLGSRYIEL 243
D L + I +
Sbjct: 933 LDGQKLRNSVISV 945
Score = 77 (32.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 27/84 (32%), Positives = 38/84 (45%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVD--FALQRN 115
++RL+ LP DV FF GL I D VH GE F +G+ D A+ ++
Sbjct: 4 IIRLKNLPMTAGASDVRTFFTGLKIPDGA-VHIIGGDEGEVF--VGFSSDDDARLAMTKD 60
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIA 139
R + V +F S + E IA
Sbjct: 61 RLMIHGAEVRLFLSSKSEQNSVIA 84
>UNIPROTKB|Q5JX62 [details] [associations]
symbol:RBM12 "RNA-binding protein 12" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR012677 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:AL109827 UniGene:Hs.700188 HGNC:HGNC:9898 IPI:IPI00644692
SMR:Q5JX62 STRING:Q5JX62 Ensembl:ENST00000424458 Uniprot:Q5JX62
Length = 291
Score = 127 (49.8 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
>ZFIN|ZDB-GENE-061103-58 [details] [associations]
symbol:zgc:153215 "zgc:153215" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-061103-58 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00620000087828
EMBL:BX649484 IPI:IPI00770497 Ensembl:ENSDART00000078297
OMA:GCLVKFA Bgee:F1R8L0 Uniprot:F1R8L0
Length = 523
Score = 113 (44.8 bits), Expect = 0.00091, P = 0.00091
Identities = 44/203 (21%), Positives = 87/203 (42%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKF---TGEAFCVLGYPLQVDFALQRN 115
V + L + T+ ++ F I + H NK+ T AF A++ N
Sbjct: 332 VIVNNLSRNITKTEIKNIFGCHAIQNYRIKHLLNKWGERTSTAFITFDNSEDQASAMKMN 391
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
N+G + +EV ++E I + +S R R P +H + +
Sbjct: 392 GMNVGLKNIEVLSITKEE----ILDILSKNRFVKSWRPPPYGNTH-------LSMSCIYA 440
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRM 234
R P K+++ FF + + +D++ + +++ G GEA VEF +K A +
Sbjct: 441 RNFPADVRKEEVKGFFMPYNIGDDAVRLLVDNQGNGIGEAIVEFRFQNIAKQAQRLHGKY 500
Query: 235 TLGSRYIELFPSSHEEMDEALSR 257
+G++ + L +H++M++ L +
Sbjct: 501 FMGAKIL-LTCITHQQMEKILGK 522
Score = 103 (41.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 40/147 (27%), Positives = 64/147 (43%)
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
++N N R V F +KR IA E GSP + R + + S + +
Sbjct: 287 EQNEANNNRNAVRAFTNKR------IAEEQPSP--GSPKKYC-RNDPSPQKEYSVIVNNL 337
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
R + K +I + F + I +N G T AF+ F N+ED +AM +
Sbjct: 338 SR------NITKTEIKNIFGCHAIQNYRIKHLLNKWGERTSTAFITFDNSEDQASAMKMN 391
Query: 233 RMTLGSRYIELFPSSHEEMDEALSRGR 259
M +G + IE+ + EE+ + LS+ R
Sbjct: 392 GMNVGLKNIEVLSITKEEILDILSKNR 418
Score = 68 (29.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCV 101
V+RL+GL + D+ FFHGL I + VH GEAF +
Sbjct: 5 VLRLQGLNTEAGSEDIRRFFHGLHIPEG-GVHIIGGEMGEAFII 47
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 131 (51.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 48/141 (34%), Positives = 68/141 (48%)
Query: 120 GRRYVEVFRSKRQEYYKAIAN-EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
G Y+E F+++ KA+ + SDV+G S KS G+ + + +L + L
Sbjct: 418 GIAYIE-FKTEAIAE-KALEEAQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNL 475
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT-LG 237
FSA +D + F+ V SI I N+ GRP G AFVEF N EDSK A+ T +
Sbjct: 476 AFSASEDSLQSVFEKAV----SIRIPQNN-GRPKGYAFVEFENVEDSKEALENCNNTDIE 530
Query: 238 SRYIELFPSSHEEMDEALSRG 258
R I L S ++ RG
Sbjct: 531 GRSIRLEYSQNDRERGGGGRG 551
Score = 39 (18.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 61 LRGLPFDCTEVDVAEFF-HGLDI 82
++ LP+ T+ D+ E F +DI
Sbjct: 384 VKNLPYSITQDDLREIFDQAVDI 406
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 46/162 (28%), Positives = 79/162 (48%)
Query: 93 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 152
K TG F L +V AL+R ++ +G +YVEV R + + + + D P +
Sbjct: 8 KSTGFIFVDLKSEAEVQKALKRKKEYIGGQYVEVSRCENAPK-ETVTAKTDD----QPWQ 62
Query: 153 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGR 210
R K DE ++ +G L +R LPF++ ++D+ F + LSE IH ++ +
Sbjct: 63 ---RMKRDDEEEEDLSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSE--IHFPIDRLTKK 117
Query: 211 PTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEM 251
P G AF+ + E + A A+ D R + L PS+ +++
Sbjct: 118 PKGFAFITYMIPEHAVKAYAEMDGQVFQGRMMHLLPSTIKKL 159
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 45/158 (28%), Positives = 73/158 (46%)
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV-SDVRGGSPHRSIPRAKSHDEGK 164
L+V L + + G Y+E F+++ E KA+ + ++V G + KS E +
Sbjct: 393 LEVRLVLNKEGSSKGMAYIE-FKTEA-EAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 450
Query: 165 DSAVH--TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
+ L + L ++A ++ + + FK SI + N+ GRP G AFVEF A
Sbjct: 451 KGGGERESKTLIVNNLSYAASEETLQELFK----KATSIKMPQNNQGRPKGYAFVEFPTA 506
Query: 223 EDSKAAMAKDRMT-LGSRYIEL-FPSSHEEMDEALSRG 258
ED+K A+ T + R I L F S + +RG
Sbjct: 507 EDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARG 544
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 45/158 (28%), Positives = 73/158 (46%)
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV-SDVRGGSPHRSIPRAKSHDEGK 164
L+V L + + G Y+E F+++ E KA+ + ++V G + KS E +
Sbjct: 395 LEVRLVLNKEGSSKGMAYIE-FKTEA-EAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 452
Query: 165 DSAVH--TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
+ L + L ++A ++ + + FK SI + N+ GRP G AFVEF A
Sbjct: 453 KGGGERESKTLIVNNLSYAASEETLQELFK----KATSIKMPQNNQGRPKGYAFVEFPTA 508
Query: 223 EDSKAAMAKDRMT-LGSRYIEL-FPSSHEEMDEALSRG 258
ED+K A+ T + R I L F S + +RG
Sbjct: 509 EDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARG 546
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 45/158 (28%), Positives = 73/158 (46%)
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV-SDVRGGSPHRSIPRAKSHDEGK 164
L+V L + + G Y+E F+++ E KA+ + ++V G + KS E +
Sbjct: 395 LEVRLVLNKEGSSKGMAYIE-FKTEA-EAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 452
Query: 165 DSAVH--TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
+ L + L ++A ++ + + FK SI + N+ GRP G AFVEF A
Sbjct: 453 KGGGERESKTLIVNNLSYAASEETLQELFK----KATSIKMPQNNQGRPKGYAFVEFPTA 508
Query: 223 EDSKAAMAKDRMT-LGSRYIEL-FPSSHEEMDEALSRG 258
ED+K A+ T + R I L F S + +RG
Sbjct: 509 EDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARG 546
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 119 (46.9 bits), Expect = 0.00037, P = 0.00037
Identities = 50/193 (25%), Positives = 83/193 (43%)
Query: 63 GLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRR 122
GLP ++ E+ + + V + + +N AF P V ALQ++ Q +G
Sbjct: 180 GLPSSAKGKNIKEWLNPIR-VKAMKIARNEDVAA-AFVTFNRPPDVRRALQKDGQFLGGF 237
Query: 123 YVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSA 182
+ + + + E +EV + G S R K + ++ + TG L LR LP++
Sbjct: 238 KIGIEKIETPEP----EHEVIEEHGASLES---RDKEEETVREKILETGRLFLRNLPYAT 290
Query: 183 GKDDIMDFFKDF-VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRY 240
+DD+ FK + +SE + I + G G A VEF E + AA A D R
Sbjct: 291 KEDDLQFLFKKYGEVSEVQVVIDKKT-GACKGFAIVEFVFPEAAVAAYSALDGYVFKGRM 349
Query: 241 IELFPSSHEEMDE 253
+ + P + E
Sbjct: 350 MHILPGDEKRTKE 362
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 29/93 (31%), Positives = 50/93 (53%)
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPT-GEAFVEF 219
+G D + G L + GLP+S ++++M+ F F +SE +H+ ++ D R G AFV +
Sbjct: 218 DGSDDVLDAGRLFVHGLPYSTTEEELMEHFSKFGDISE--VHLVLDKDTRSCRGMAFVLY 275
Query: 220 ANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEM 251
E +K AM K D++ R + + P+ M
Sbjct: 276 LIPESAKMAMDKLDKLPFQGRTLHILPAKPRAM 308
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 99 (39.9 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 26/113 (23%), Positives = 54/113 (47%)
Query: 140 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 199
NEV++V S + P ++ TG L +R + + A ++D F + E+
Sbjct: 281 NEVTEVTQQSDNE--PELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEE 338
Query: 200 SIHITMNS-DGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEE 250
+HI +++ G+ G +V+F ED+ +A + D+ R + + P+ ++
Sbjct: 339 -VHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILPADKKK 390
Score = 62 (26.9 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 61 LRGLPFDCTEVDVAEFFHGL-DIVDVLFVHKNNKFTGEA--FCVLGYPLQVDFALQRNRQ 117
++GLP TE + EFF D+ DV + K N GE+ F +GY D A +R +
Sbjct: 6 VKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRN---GESRKFAFIGYK-SAD-AAERAVK 60
Query: 118 NMGRRYVEVFRSKRQEYYKAIAN 140
+ +++ R + E+ K ++
Sbjct: 61 YFNKSFIDTARIE-VEFAKTFSD 82
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 100 (40.3 bits), Expect = 0.00055, P = 0.00055
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAK 231
L + GLPFS K+++ + K +D + + N G+P G A+VE+ N ++ S+A M
Sbjct: 42 LFISGLPFSCTKEELEEICKAHGTVKD-LRLVTNRAGKPKGLAYVEYENESQASQAVMKM 100
Query: 232 DRMTLGSRYIEL 243
D MT+ I++
Sbjct: 101 DGMTIKENIIKV 112
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 259 259 0.00088 114 3 11 22 0.45 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 156
No. of states in DFA: 573 (61 KB)
Total size of DFA: 179 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.55u 0.08s 24.63t Elapsed: 00:00:01
Total cpu time: 24.59u 0.08s 24.67t Elapsed: 00:00:01
Start: Sat May 11 11:18:48 2013 End: Sat May 11 11:18:49 2013
WARNINGS ISSUED: 1