BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025001
(259 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255544880|ref|XP_002513501.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
gi|223547409|gb|EEF48904.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
Length = 260
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/259 (86%), Positives = 244/259 (94%), Gaps = 2/259 (0%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVR 60
MFYRG++ +G DGREMGAKRQRL+DQGPS+YGT P SFMYNPPP YGYV+QPPPFPVVR
Sbjct: 4 MFYRGRYPDGGDGREMGAKRQRLVDQGPSYYGTSPGPSFMYNPPP-YGYVAQPPPFPVVR 62
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMG 120
LRGLPFDCTE DVAEFFHGLDIVDVLFVHK KFTGEAFCVLG PLQVDFALQ+NRQNMG
Sbjct: 63 LRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEAFCVLGCPLQVDFALQKNRQNMG 122
Query: 121 RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 180
RRYVEVFRSKRQ+YYKAIANEVSD RGGSP R+ PRAKS+DEGKDSA HTG+LRLRGLPF
Sbjct: 123 RRYVEVFRSKRQDYYKAIANEVSDARGGSPRRA-PRAKSYDEGKDSAEHTGVLRLRGLPF 181
Query: 181 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240
SAGKDDIM+FFKDFVLSEDS+HITMNS+GRPTGEAFVEFA+AEDSKAAMAKDRMTLGSRY
Sbjct: 182 SAGKDDIMEFFKDFVLSEDSVHITMNSEGRPTGEAFVEFASAEDSKAAMAKDRMTLGSRY 241
Query: 241 IELFPSSHEEMDEALSRGR 259
IELFPSS EE++EA++RGR
Sbjct: 242 IELFPSSIEELEEAVTRGR 260
>gi|225435437|ref|XP_002285426.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Vitis
vinifera]
Length = 258
Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/259 (83%), Positives = 237/259 (91%), Gaps = 1/259 (0%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVR 60
MFYRGK+A+G DGR+MG KRQR+ DQG SFYG P S+FMYN P Y Y+ QPPPFPVVR
Sbjct: 1 MFYRGKYADGLDGRDMGPKRQRITDQGSSFYGGSPGSNFMYNASP-YSYIGQPPPFPVVR 59
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMG 120
LRGLPFDC+E DVAEFFH LDIVDVLFVHKN +FTGEAFCVLGYPLQV+FALQRNRQNMG
Sbjct: 60 LRGLPFDCSEADVAEFFHSLDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMG 119
Query: 121 RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 180
RRYVEVFRSKRQEYYKAIANEVSD RGGSP R+ P+AKS+DEGK+SA HTG+LRLRGLPF
Sbjct: 120 RRYVEVFRSKRQEYYKAIANEVSDTRGGSPRRTAPKAKSNDEGKESAEHTGVLRLRGLPF 179
Query: 181 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240
SA K+DIMDFFKDFVLSEDSIH+T+NS+GRPTGEAFVEF NAEDSKAAMAKDRMTLGSRY
Sbjct: 180 SASKEDIMDFFKDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRY 239
Query: 241 IELFPSSHEEMDEALSRGR 259
IELFPSS EE+DEA++RGR
Sbjct: 240 IELFPSSLEELDEAVARGR 258
>gi|449448717|ref|XP_004142112.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
gi|449502606|ref|XP_004161690.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Cucumis sativus]
Length = 260
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/259 (81%), Positives = 233/259 (89%), Gaps = 1/259 (0%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVR 60
MFYRG +A+G DGREMGAKRQR++DQG S+YGT P S FMYN P Y YV+QPPPFPVVR
Sbjct: 3 MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSP-YAYVNQPPPFPVVR 61
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMG 120
LRGLPFDC E DV EFFHGLDIVD+LFVHKN KFTGE FCVLGYPLQVDFALQRNRQNMG
Sbjct: 62 LRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMG 121
Query: 121 RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 180
RRYVE+FRS RQEYYKA+ANEV D RGGSP RS PR+K +DE KDSA HTG+LRLRGLP+
Sbjct: 122 RRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPY 181
Query: 181 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240
SAGKDDI+DFFK F LSEDSIH+T+NS+GRP+GEAFVEF+N +DSKAAM+KDRMTLGSRY
Sbjct: 182 SAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRY 241
Query: 241 IELFPSSHEEMDEALSRGR 259
IELFPSSHEE+DEA+SRGR
Sbjct: 242 IELFPSSHEELDEAISRGR 260
>gi|224059562|ref|XP_002299908.1| predicted protein [Populus trichocarpa]
gi|222847166|gb|EEE84713.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/255 (86%), Positives = 235/255 (92%), Gaps = 3/255 (1%)
Query: 6 KFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPP-FPVVRLRGL 64
++ +G DGREMGAKRQR++DQGPSFYG P SSFMYN PP YGYVSQPPP FPVVRLRGL
Sbjct: 1 RYPDGPDGREMGAKRQRMVDQGPSFYGNSPGSSFMYNTPP-YGYVSQPPPPFPVVRLRGL 59
Query: 65 PFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYV 124
PFDCTE DVAEFF GLDIVDVLFVHK KFTGEAFCVLGYPLQVDFALQ+NRQNMGRRYV
Sbjct: 60 PFDCTETDVAEFFRGLDIVDVLFVHKGGKFTGEAFCVLGYPLQVDFALQKNRQNMGRRYV 119
Query: 125 EVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGK 184
EVFRSKRQ+YYKAIANEVS+ R GSP R+I RAKS+DEGKD A HTG+LRLRGLPFSAGK
Sbjct: 120 EVFRSKRQDYYKAIANEVSESR-GSPRRNISRAKSYDEGKDLAEHTGVLRLRGLPFSAGK 178
Query: 185 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
DDIM+FFKDFVLSED IHITMNS+GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF
Sbjct: 179 DDIMEFFKDFVLSEDLIHITMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 238
Query: 245 PSSHEEMDEALSRGR 259
PSS EE+DEA+SRGR
Sbjct: 239 PSSIEELDEAVSRGR 253
>gi|224104153|ref|XP_002313339.1| predicted protein [Populus trichocarpa]
gi|222849747|gb|EEE87294.1| predicted protein [Populus trichocarpa]
Length = 253
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/259 (84%), Positives = 232/259 (89%), Gaps = 6/259 (2%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVR 60
MFYRG DGREMGAKRQR+ D+GPSFY P SSFMYN PP GY SQPP FPVVR
Sbjct: 1 MFYRGY----PDGREMGAKRQRIADKGPSFYANSPGSSFMYNAPPN-GYASQPPHFPVVR 55
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMG 120
LRGLPFDCTE DVAEFFHGLDIVDVLFVHK KF+GEAFCVLGYPLQVDFALQ+NRQNMG
Sbjct: 56 LRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFSGEAFCVLGYPLQVDFALQKNRQNMG 115
Query: 121 RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 180
RRYVEVFRSKRQ+YYK IANEVS+ RG SP R+IPRAKS+DEGKDSA HTG+LRLRGLPF
Sbjct: 116 RRYVEVFRSKRQDYYKTIANEVSESRG-SPRRNIPRAKSYDEGKDSAEHTGVLRLRGLPF 174
Query: 181 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240
SA KDDIM+FFKDFVLSEDSIHITMNS+GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY
Sbjct: 175 SASKDDIMEFFKDFVLSEDSIHITMNSEGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 234
Query: 241 IELFPSSHEEMDEALSRGR 259
IELFPSS EE DEA+SRGR
Sbjct: 235 IELFPSSVEESDEAVSRGR 253
>gi|357460387|ref|XP_003600475.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
gi|355489523|gb|AES70726.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
Length = 259
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/261 (83%), Positives = 236/261 (90%), Gaps = 4/261 (1%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP--V 58
M YRGKFA+G DGREM +KRQR +D G SFYG+P SS+MYNP P YGYVSQPPP P V
Sbjct: 1 MLYRGKFADGGDGREMASKRQRTVDAGSSFYGSP-GSSYMYNPSP-YGYVSQPPPPPFPV 58
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
VRLRGLPFDCTE DVAEFFHGLDIVDVLFVHK KF+GE FCVLGYPLQVDFALQRNRQN
Sbjct: 59 VRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFSGEGFCVLGYPLQVDFALQRNRQN 118
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
+GRRYVEVFRSKRQEYYKAIANEVSD RGGSP RS PRAKS+DEGKDSA HTG+LRLRGL
Sbjct: 119 IGRRYVEVFRSKRQEYYKAIANEVSDARGGSPRRSAPRAKSYDEGKDSAEHTGVLRLRGL 178
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PFSA KDDIMDFFK++VLSEDSIHI MNS+GRP+GEA+VEF NA+DSKAAMAKDRMTLGS
Sbjct: 179 PFSANKDDIMDFFKEYVLSEDSIHIVMNSEGRPSGEAYVEFENADDSKAAMAKDRMTLGS 238
Query: 239 RYIELFPSSHEEMDEALSRGR 259
RYIELFPS+H EM++A+SRGR
Sbjct: 239 RYIELFPSTHGEMEDAISRGR 259
>gi|358248784|ref|NP_001239939.1| uncharacterized protein LOC100805177 [Glycine max]
gi|255644706|gb|ACU22855.1| unknown [Glycine max]
Length = 261
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/262 (82%), Positives = 230/262 (87%), Gaps = 4/262 (1%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP--- 57
MFYRGKFA+G DGREM AKRQR +D G SFYG S+FMYNP P YGYVSQPPP P
Sbjct: 1 MFYRGKFADGGDGREMAAKRQRTVDPGSSFYGASTGSNFMYNPSP-YGYVSQPPPPPPFP 59
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VVRLRGLPFDCTE DVAEFFHGLDIVDVLFVHK KFTGE FCVLGYPLQVDFALQRNRQ
Sbjct: 60 VVRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQ 119
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
NMGRRYVEVFRSKRQEYYKAIANEVSD RGGSP RS RAKS+DEGK+SA HTG+LRLRG
Sbjct: 120 NMGRRYVEVFRSKRQEYYKAIANEVSDARGGSPRRSASRAKSYDEGKESAEHTGVLRLRG 179
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
LPFSA KDDIM+FFKDF L EDSIHI MNS+GRP+GEA+ EF +AEDSKAAM KDRMTLG
Sbjct: 180 LPFSASKDDIMEFFKDFGLPEDSIHIIMNSEGRPSGEAYAEFESAEDSKAAMIKDRMTLG 239
Query: 238 SRYIELFPSSHEEMDEALSRGR 259
SRYIELFPSSH EM+EA+SRGR
Sbjct: 240 SRYIELFPSSHGEMEEAISRGR 261
>gi|356527218|ref|XP_003532209.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Glycine
max]
Length = 260
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/261 (83%), Positives = 230/261 (88%), Gaps = 3/261 (1%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP--V 58
MFYRGKFA+G DGREM AKRQR +D G SFYG S+FMYNP P YGYVSQPPP P V
Sbjct: 1 MFYRGKFADGGDGREMAAKRQRTVDPGSSFYGASTGSNFMYNPSP-YGYVSQPPPPPFPV 59
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
VRLRGLPFDCTE DVAEFFHGLDIVDVLFVHK KFTGE FCVLGYPLQVDFALQRNRQN
Sbjct: 60 VRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQRNRQN 119
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
MGRRYVEVFRSKRQEYYKAIANEVSD RGGSP RS RAKS+DEGKDSA HTG+LRLRGL
Sbjct: 120 MGRRYVEVFRSKRQEYYKAIANEVSDARGGSPRRSASRAKSYDEGKDSAEHTGVLRLRGL 179
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PFSA KDDIM+FFKDF L EDSIHI MNS+GRP+GEA+ EFA+AEDSKAAM KDRMTLGS
Sbjct: 180 PFSASKDDIMEFFKDFGLPEDSIHIIMNSEGRPSGEAYAEFASAEDSKAAMVKDRMTLGS 239
Query: 239 RYIELFPSSHEEMDEALSRGR 259
RYIELFPSS EM+EA+SRGR
Sbjct: 240 RYIELFPSSPGEMEEAISRGR 260
>gi|388504640|gb|AFK40386.1| unknown [Medicago truncatula]
Length = 259
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/261 (82%), Positives = 233/261 (89%), Gaps = 4/261 (1%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP--V 58
M YRGKFA+G DGREM +KRQR +D G SFYG+P SS+MYNP P YGYVSQPPP P V
Sbjct: 1 MLYRGKFADGGDGREMASKRQRTVDAGSSFYGSP-GSSYMYNPSP-YGYVSQPPPPPFPV 58
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
VRLRGLPFDCTE DVAEFFHGLDIVDVLFVHK KF+GE FCVLGYPLQVDFALQRNRQN
Sbjct: 59 VRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFSGEGFCVLGYPLQVDFALQRNRQN 118
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
+GRRYVEVFRSKRQEYYKAIANEVSD RGGSP RS PRAK +DEGKDSA HTG+LRLRGL
Sbjct: 119 IGRRYVEVFRSKRQEYYKAIANEVSDARGGSPRRSAPRAKPYDEGKDSAEHTGVLRLRGL 178
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PF A KDDIMDFFK++VLSEDSIHI MNS+GRP GEA+VEF NA+DSKAAMAKDRMTLGS
Sbjct: 179 PFFANKDDIMDFFKEYVLSEDSIHIVMNSEGRPFGEAYVEFENADDSKAAMAKDRMTLGS 238
Query: 239 RYIELFPSSHEEMDEALSRGR 259
RYIELFPS+H EM++A+SRGR
Sbjct: 239 RYIELFPSTHGEMEDAISRGR 259
>gi|255645750|gb|ACU23368.1| unknown [Glycine max]
Length = 260
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/261 (82%), Positives = 227/261 (86%), Gaps = 3/261 (1%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP--V 58
MFYRGKFA+G DGREM AKRQR +D G SFYG S+FMYNP P YGYVSQPPP P V
Sbjct: 1 MFYRGKFADGGDGREMAAKRQRTVDPGSSFYGASTGSNFMYNPSP-YGYVSQPPPPPFPV 59
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
VRLRGLPFDCTE DVAEFFHGLDIVDVLFVHK KFTGE FCVLGYPLQVDFALQ NRQN
Sbjct: 60 VRLRGLPFDCTETDVAEFFHGLDIVDVLFVHKGGKFTGEGFCVLGYPLQVDFALQGNRQN 119
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
MGRRYVEVFRSKRQEYYKAIANEVSD RGGSP RS RAKS+DEGKDSA HTG+LRLRGL
Sbjct: 120 MGRRYVEVFRSKRQEYYKAIANEVSDARGGSPRRSASRAKSYDEGKDSAEHTGVLRLRGL 179
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PF A KDDIM+FFKDF L EDSIHI MNS+GRP GEA+ EFA+AEDSKAAM KDRMTLGS
Sbjct: 180 PFFASKDDIMEFFKDFGLPEDSIHIIMNSEGRPFGEAYAEFASAEDSKAAMVKDRMTLGS 239
Query: 239 RYIELFPSSHEEMDEALSRGR 259
RYIELFPSS EM+EA+SRGR
Sbjct: 240 RYIELFPSSPGEMEEAISRGR 260
>gi|297746312|emb|CBI16368.3| unnamed protein product [Vitis vinifera]
Length = 235
Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/259 (77%), Positives = 217/259 (83%), Gaps = 24/259 (9%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVR 60
MFYRGK+A+G DGR+MG KRQR+ DQG SFYG P S+FMYN P Y Y+ QPPPFPVVR
Sbjct: 1 MFYRGKYADGLDGRDMGPKRQRITDQGSSFYGGSPGSNFMYNASP-YSYIGQPPPFPVVR 59
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMG 120
LRGLPFDC+E DVAEFFH LDIVDVLFVHKN +FTGEAFCVLGYPLQV+FALQRNRQNMG
Sbjct: 60 LRGLPFDCSEADVAEFFHSLDIVDVLFVHKNGRFTGEAFCVLGYPLQVEFALQRNRQNMG 119
Query: 121 RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 180
RRYVEVFRSKRQEYYKAIANEVSD RG G+LRLRGLPF
Sbjct: 120 RRYVEVFRSKRQEYYKAIANEVSDTRG-----------------------GVLRLRGLPF 156
Query: 181 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240
SA K+DIMDFFKDFVLSEDSIH+T+NS+GRPTGEAFVEF NAEDSKAAMAKDRMTLGSRY
Sbjct: 157 SASKEDIMDFFKDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRY 216
Query: 241 IELFPSSHEEMDEALSRGR 259
IELFPSS EE+DEA++RGR
Sbjct: 217 IELFPSSLEELDEAVARGR 235
>gi|82621148|gb|ABB86262.1| unknown [Solanum tuberosum]
Length = 364
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/264 (71%), Positives = 220/264 (83%), Gaps = 9/264 (3%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPP-----AYGYVSQPPP 55
M+YRG + + D REMG KRQR++DQG S+Y TPP SS+MYNPPP +Y Y QPPP
Sbjct: 1 MYYRGNYMDSGDAREMGFKRQRIMDQGSSYYATPPGSSYMYNPPPPPPPPSYSYHGQPPP 60
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
FPVVRLRGLPFDC+E ++A+F HGLD+VDVL VHK +FTGEA+CVLGYPLQVDFALQRN
Sbjct: 61 FPVVRLRGLPFDCSETEIADFLHGLDVVDVLLVHKGGRFTGEAYCVLGYPLQVDFALQRN 120
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
RQN+GRRYVEVFRSK++EYYKAIANEV D RGG S+PRA+S DE K HTG+L L
Sbjct: 121 RQNIGRRYVEVFRSKKEEYYKAIANEVYDSRGG----SVPRARSADESKTLPEHTGVLWL 176
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 235
RGLPFSA K+DI+DFFKDF L E SIHIT +GRPTGEAFVEFA+A+DS+AAMAKDRMT
Sbjct: 177 RGLPFSASKEDIIDFFKDFELPEKSIHITATFEGRPTGEAFVEFASADDSRAAMAKDRMT 236
Query: 236 LGSRYIELFPSSHEEMDEALSRGR 259
+G+RYIELF SS EE++EA+SRGR
Sbjct: 237 IGNRYIELFASSSEELEEAVSRGR 260
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 137/206 (66%), Gaps = 18/206 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKF----TGEAFCVLGYPLQVDFALQ 113
V+ LRGLPF ++ D+ +FF ++ + +H F TGEAF A+
Sbjct: 173 VLWLRGLPFSASKEDIIDFFKDFELPEKS-IHITATFEGRPTGEAFVEFASADDSRAAMA 231
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
++R +G RY+E+F S +E +A++ RG + + +G+D T IL
Sbjct: 232 KDRMTIGNRYIELFASSSEELEEAVS------RGRVLEKPV-------DGRDPNEVTSIL 278
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
R+RGLPFSAGKDDIMDFFKDF L+ED+IH+T SDGRPTGEAFVEFA+ +D+KAA+AKDR
Sbjct: 279 RMRGLPFSAGKDDIMDFFKDFALTEDAIHVTFLSDGRPTGEAFVEFASTDDAKAALAKDR 338
Query: 234 MTLGSRYIELFPSSHEEMDEALSRGR 259
MTLGSRY+ELFPSS E+M+ A+SRGR
Sbjct: 339 MTLGSRYVELFPSSIEDMNHAISRGR 364
>gi|334185502|ref|NP_188725.3| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|332642915|gb|AEE76436.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 292
Score = 362 bits (930), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 199/296 (67%), Positives = 224/296 (75%), Gaps = 41/296 (13%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPS--FYGTPPSSSFMYNPPPAYGYVSQPPPFPV 58
MFYRG + +G DGREMG KRQR+IDQGP FYG PSS FMYNP YG+V+ PPP P
Sbjct: 1 MFYRG-YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNP---YGFVAPPPPPPF 56
Query: 59 V--RLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
RLRGLPFDC E+DV EFFHGLD+VDVLFVH+NNK TGEAFCVLGYPLQVDFALQ+NR
Sbjct: 57 PAVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNR 116
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVR------------------------------ 146
QNMGRRYVEVFRS +QEYYKAIANEV++ R
Sbjct: 117 QNMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGR 176
Query: 147 ---GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
G SP R + RA+S D+GK+ HTGILRLRGLPFSAGK+DI+DFFKDF LSED +H+
Sbjct: 177 ISGGSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHV 236
Query: 204 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+N +GRPTGEAFVEF NAEDS+AAM KDR TLGSRYIELFPSS EE++EALSRGR
Sbjct: 237 TVNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292
>gi|297830788|ref|XP_002883276.1| hypothetical protein ARALYDRAFT_318838 [Arabidopsis lyrata subsp.
lyrata]
gi|297329116|gb|EFH59535.1| hypothetical protein ARALYDRAFT_318838 [Arabidopsis lyrata subsp.
lyrata]
Length = 356
Score = 356 bits (914), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 193/290 (66%), Positives = 218/290 (75%), Gaps = 40/290 (13%)
Query: 7 FAEGADGREMGAKRQRLIDQGPS--FYGTPPSSSFMYNPPPAYGYVSQPPPFPVV--RLR 62
+ +G DGREMG KRQR+IDQGP FYG P S FMYNP YG+V+ PPP P RLR
Sbjct: 70 YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPGSGFMYNP---YGFVAPPPPPPFPAVRLR 126
Query: 63 GLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRR 122
GLPFDC E+DV EFFHGLD+VDVLFVHKNNK TGEAFCVLGYPLQVDFALQ+NRQNMGRR
Sbjct: 127 GLPFDCAEIDVVEFFHGLDVVDVLFVHKNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRR 186
Query: 123 YVEVFRSKRQEYYKAIANEVSDVR---------------------------------GGS 149
YVEVFRS +QEYYKAIANEV++ R G S
Sbjct: 187 YVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGGGGGTGGGNGGGGGGGGGRISGGSS 246
Query: 150 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209
P R + RA+S D+GK+ HTG LRLRGLPFSAGK+DI+DFFKDF LSEDS+H+T+N +G
Sbjct: 247 PRRHVQRARSSDDGKEDIEHTGTLRLRGLPFSAGKEDILDFFKDFELSEDSVHVTVNGEG 306
Query: 210 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
RPTGEAFVEF NAE+S+AAM KDR TLGSRYIELFPSS EE++EALSRGR
Sbjct: 307 RPTGEAFVEFRNAEESRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 356
>gi|147832351|emb|CAN73277.1| hypothetical protein VITISV_031233 [Vitis vinifera]
Length = 260
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 178/254 (70%), Positives = 197/254 (77%), Gaps = 36/254 (14%)
Query: 6 KFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLP 65
K+A+G DGR+MG KRQR+ DQG SFYG P S+FMYN P Y Y+ QPPPFPVVRLRGLP
Sbjct: 43 KYADGLDGRDMGPKRQRITDQGSSFYGGSPGSNFMYNASP-YSYIGQPPPFPVVRLRGLP 101
Query: 66 FDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVE 125
FDC+E DVAEFFH LDIVDVLFVHKN
Sbjct: 102 FDCSEADVAEFFHSLDIVDVLFVHKNG--------------------------------- 128
Query: 126 VFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKD 185
RSKRQEYYKAIANEVSD RGGSP R+ P+AKS+DEGK+SA HTG+LRLRGLPFSA K+
Sbjct: 129 --RSKRQEYYKAIANEVSDTRGGSPRRTAPKAKSNDEGKESAEHTGVLRLRGLPFSASKE 186
Query: 186 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245
DIMDFFKDFVLSEDSIH+T+NS+GRPTGEAFVEF NAEDSKAAMAKDRMTLGSRYIELFP
Sbjct: 187 DIMDFFKDFVLSEDSIHMTVNSEGRPTGEAFVEFTNAEDSKAAMAKDRMTLGSRYIELFP 246
Query: 246 SSHEEMDEALSRGR 259
SS EE+DEA++RGR
Sbjct: 247 SSLEELDEAVARGR 260
>gi|9294416|dbj|BAB02497.1| unnamed protein product [Arabidopsis thaliana]
Length = 278
Score = 345 bits (886), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 189/281 (67%), Positives = 212/281 (75%), Gaps = 40/281 (14%)
Query: 16 MGAKRQRLIDQGPS--FYGTPPSSSFMYNPPPAYGYVSQPPPFPVV--RLRGLPFDCTEV 71
MG KRQR+IDQGP FYG PSS FMYNP YG+V+ PPP P RLRGLPFDC E+
Sbjct: 1 MGPKRQRMIDQGPPGPFYGPHPSSGFMYNP---YGFVAPPPPPPFPAVRLRGLPFDCAEL 57
Query: 72 DVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 131
DV EFFHGLD+VDVLFVH+NNK TGEAFCVLGYPLQVDFALQ+NRQNMGRRYVEVFRS +
Sbjct: 58 DVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYVEVFRSTK 117
Query: 132 QEYYKAIANEVSDVR---------------------------------GGSPHRSIPRAK 158
QEYYKAIANEV++ R G SP R + RA+
Sbjct: 118 QEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPRRHVQRAR 177
Query: 159 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 218
S D+GK+ HTGILRLRGLPFSAGK+DI+DFFKDF LSED +H+T+N +GRPTGEAFVE
Sbjct: 178 SSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVE 237
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
F NAEDS+AAM KDR TLGSRYIELFPSS EE++EALSRGR
Sbjct: 238 FRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 278
>gi|302789778|ref|XP_002976657.1| hypothetical protein SELMODRAFT_416554 [Selaginella moellendorffii]
gi|300155695|gb|EFJ22326.1| hypothetical protein SELMODRAFT_416554 [Selaginella moellendorffii]
Length = 287
Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 158/288 (54%), Positives = 195/288 (67%), Gaps = 30/288 (10%)
Query: 1 MFYRGKF---AEGADGREMGA-KRQRLIDQGPSFYGTPPSS-----SFMYNPPPAYGYVS 51
MF RG ADG E+ A KRQRL+D S++G+ P + SFMY P + ++
Sbjct: 1 MFSRGNLLGSGGSADGYEVAAAKRQRLLDTAGSYFGSSPHATAAHASFMYGGP-GFSFLG 59
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFA 111
QP PFPVVRLRGLPF+C+E DV EFF GLD+VDVL V K +F+GEAF VLG P+QVDFA
Sbjct: 60 QPRPFPVVRLRGLPFNCSESDVFEFFAGLDVVDVLLVRKQGRFSGEAFVVLGAPMQVDFA 119
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI----------------- 154
LQRNRQNMGRRYVEVFRSK+Q+YY A+A EV+D R G ++
Sbjct: 120 LQRNRQNMGRRYVEVFRSKKQDYYSAVATEVNDPRSGDVLATLASSAAGGGGGGGGGGGG 179
Query: 155 ---PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 211
K+ KD A HTG+L+LRGLPFSA K DI++FF++F L EDS+ I ++SDGR
Sbjct: 180 GGGGSGKNSLCDKDLAEHTGVLKLRGLPFSASKRDIVEFFREFGLKEDSVQIVVHSDGRA 239
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
TGEA+V F DSKAAM KD+MTLG+RY+ELFPSS EE + A S+ R
Sbjct: 240 TGEAYVFFLGPGDSKAAMNKDKMTLGNRYVELFPSSREEANRAASKSR 287
>gi|302782846|ref|XP_002973196.1| hypothetical protein SELMODRAFT_413714 [Selaginella moellendorffii]
gi|300158949|gb|EFJ25570.1| hypothetical protein SELMODRAFT_413714 [Selaginella moellendorffii]
Length = 289
Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 158/290 (54%), Positives = 195/290 (67%), Gaps = 32/290 (11%)
Query: 1 MFYRGKF---AEGADGREMGA-KRQRLIDQGPSFYGTPPSS-----SFMYNPPPAYGYVS 51
MF RG ADG E+ A KRQRL+D S++G+ P + SFMY P + ++
Sbjct: 1 MFSRGNLLGSGGSADGYEVAAAKRQRLLDTAGSYFGSSPHATAAHASFMYGGP-GFAFLG 59
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFA 111
QP PFPVVRLRGLPF+C+E DV EFF GLD+VDVL V K +F+GEAF VLG P+QVDFA
Sbjct: 60 QPRPFPVVRLRGLPFNCSESDVFEFFAGLDVVDVLLVRKQGRFSGEAFVVLGAPMQVDFA 119
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI----------------- 154
LQRNRQNMGRRYVEVFRSK+Q+YY A+A EV+D R G ++
Sbjct: 120 LQRNRQNMGRRYVEVFRSKKQDYYSAVATEVNDPRSGDVLATLASSAAGGGGGGGGSGGG 179
Query: 155 -----PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209
K+ KD A HTG+L+LRGLPFSA K DI++FF++F L EDS+ I ++SDG
Sbjct: 180 GGGGGSSGKNSLCDKDLAEHTGVLKLRGLPFSASKRDIVEFFREFGLKEDSVQIVVHSDG 239
Query: 210 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
R TGEA+V F DSKAAM KD+MTLG+RY+ELFPSS EE + A S+ R
Sbjct: 240 RATGEAYVFFLGPGDSKAAMNKDKMTLGNRYVELFPSSREEANRAASKSR 289
>gi|294461466|gb|ADE76294.1| unknown [Picea sitchensis]
Length = 262
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 147/262 (56%), Positives = 182/262 (69%), Gaps = 4/262 (1%)
Query: 1 MFYRGKFAEG---ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP 57
MF RG G ++G E+ +KRQR+ID P F GT + Y Y +QP FP
Sbjct: 1 MFSRGAMLGGGGMSEGYEVSSKRQRMIDPDPYFSGTSAFGPYGYGSGMPY-LANQPRSFP 59
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VVRLRGLPF+C++ DV EFF GLD+VDVL VHK +F+GE F V G P+QVDFALQR+RQ
Sbjct: 60 VVRLRGLPFNCSDNDVCEFFAGLDVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQRDRQ 119
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
NMGRRY+EVFR K+Q+YY AIA EV++ +GG KD HTGIL+LRG
Sbjct: 120 NMGRRYIEVFRCKKQDYYNAIAAEVNEPKGGDDAAPPSGYSKGSSDKDHMEHTGILKLRG 179
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
LPFS K DI++FF D+ LSE ++HI +SDGR TGEAFVEF+N DSKAAM+KD+M +G
Sbjct: 180 LPFSVSKRDIIEFFTDYDLSETNVHIVSHSDGRATGEAFVEFSNDTDSKAAMSKDKMMIG 239
Query: 238 SRYIELFPSSHEEMDEALSRGR 259
+RY+ELFPS+ EE A SR R
Sbjct: 240 TRYVELFPSTREEASRAASRSR 261
>gi|294460097|gb|ADE75631.1| unknown [Picea sitchensis]
Length = 256
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/249 (57%), Positives = 177/249 (71%), Gaps = 1/249 (0%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTE 70
++G E+ +KRQR+ID P F GT + Y Y +QP FPVVRLRGLPF+C++
Sbjct: 8 SEGYEVSSKRQRMIDPDPYFSGTSAFGPYGYGSGMPY-LANQPRSFPVVRLRGLPFNCSD 66
Query: 71 VDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130
DV EFF GLD+VDVL VHK +F+GE F V G P+QVDFALQR+RQNMGRRY+EVFR K
Sbjct: 67 NDVCEFFAGLDVVDVLLVHKQGRFSGEGFVVFGAPMQVDFALQRDRQNMGRRYIEVFRCK 126
Query: 131 RQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDF 190
+Q+YY AIA EV++ +GG KD HTGIL+LRGLPFS K DI++F
Sbjct: 127 KQDYYNAIAAEVNEPKGGDDAAPPSGYSKGSSDKDHMEHTGILKLRGLPFSVSKRDIIEF 186
Query: 191 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
F D+ LSE ++HI +SDGR TGEAFVEF+N DSKAAM+KD+M +G+RY+ELFPS+ EE
Sbjct: 187 FTDYDLSETNVHIVSHSDGRATGEAFVEFSNDTDSKAAMSKDKMMIGTRYVELFPSTREE 246
Query: 251 MDEALSRGR 259
A SR R
Sbjct: 247 ASRAASRSR 255
>gi|224084107|ref|XP_002307213.1| predicted protein [Populus trichocarpa]
gi|222856662|gb|EEE94209.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 142/253 (56%), Positives = 186/253 (73%), Gaps = 8/253 (3%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTE 70
+DG E+G+KRQR+++ P F + +S F P YG QPPPFPVVRLRGLPF+C++
Sbjct: 8 SDGYEVGSKRQRMMESNPYFAVSSGASGFQ---PYGYGGGFQPPPFPVVRLRGLPFNCSD 64
Query: 71 VDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130
V++ +FF GLDIVDVL V+K+ +FTGEAF V P+QV+FALQR+RQNMGRRYVEVFR K
Sbjct: 65 VEILKFFAGLDIVDVLLVNKSGRFTGEAFVVFAGPMQVEFALQRDRQNMGRRYVEVFRCK 124
Query: 131 RQEYYKAIANEVS--DVRGGSPHRSIP--RAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 186
RQ+YY A+A EV+ + H S P RAK + KD +T IL++RGLPFSA K +
Sbjct: 125 RQDYYNAVAAEVNYEGIYDNDYHGSPPPSRAKRFSD-KDQMEYTEILKMRGLPFSAKKAE 183
Query: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246
I++FFKDF L ++ IHI DG+ TGEA+VEF +AE++K AM+KD+MT+GSRY+ELFPS
Sbjct: 184 IIEFFKDFKLIDERIHIACRPDGKATGEAYVEFISAEEAKRAMSKDKMTIGSRYVELFPS 243
Query: 247 SHEEMDEALSRGR 259
+ +E A SR R
Sbjct: 244 TQDEARRAESRSR 256
>gi|294461682|gb|ADE76400.1| unknown [Picea sitchensis]
Length = 265
Score = 274 bits (700), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/268 (53%), Positives = 182/268 (67%), Gaps = 13/268 (4%)
Query: 1 MFYRGKFAEG---ADGREMGAKRQRLIDQGPSFYGTP---PSSSFMYNPPPAYGYVSQPP 54
MF RG G ++G E+ +KRQR+ID P F G P S P Y QP
Sbjct: 1 MFSRGAMLGGGGMSEGYEVSSKRQRMIDPEPYFSGPSGFGPYSGLGSGMPMPY-LAGQPR 59
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
FPVVRLRGLPF+C+E D+ EFF GLD+VD L VHK +F+GE F + P+QVDFALQR
Sbjct: 60 VFPVVRLRGLPFNCSESDICEFFAGLDVVDALLVHKQGRFSGEGFVLFRSPMQVDFALQR 119
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG---SPHRSIPRAKSHDEGKDSAVHTG 171
+RQNMGRRY+EVFR K+Q+YY A+A EV++ + G +P + S KD HTG
Sbjct: 120 DRQNMGRRYIEVFRCKKQDYYNAVAAEVNEPKAGDDAAPPSGYSKGSSE---KDHMEHTG 176
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
L+LRGLPFS + DI++FFKD+ L E ++HI +SDGR TGEAFVEF++A DSK AM+K
Sbjct: 177 FLKLRGLPFSVSRRDIVEFFKDYQLKEKNVHIVTHSDGRATGEAFVEFSSAADSKDAMSK 236
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D+MT+G+RY+ELFPS+ EE A SR R
Sbjct: 237 DKMTIGTRYVELFPSTQEEASRAASRSR 264
>gi|359476979|ref|XP_002280225.2| PREDICTED: epithelial splicing regulatory protein 2-like [Vitis
vinifera]
Length = 264
Score = 269 bits (687), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 137/252 (54%), Positives = 180/252 (71%), Gaps = 6/252 (2%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTE 70
+DG E+G+KRQR+++ P F + +S F P YG QPP FPVVRLRGLPF+CT+
Sbjct: 15 SDGYEIGSKRQRMMESNPYFAVSSSASGFQ---PYGYGSGFQPPTFPVVRLRGLPFNCTD 71
Query: 71 VDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130
+D+ +FF GLDIVDVL V+K+ +F+GEA+ V +Q DFALQR+RQNMGRRYVEVFR K
Sbjct: 72 IDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVEVFRCK 131
Query: 131 RQEYYKAIANEVS--DVRGGSPHRSIPRAKSHD-EGKDSAVHTGILRLRGLPFSAGKDDI 187
+Q+YY A+A+EV+ + H S P ++S KD HT IL+LRGLPFS K I
Sbjct: 132 KQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFSVKKSQI 191
Query: 188 MDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
++FF DF L +D +HI DG+ TGEA+VEFA+AE++K AM KD+MT+GSRY+ELFPS+
Sbjct: 192 LEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELFPST 251
Query: 248 HEEMDEALSRGR 259
+E A SR R
Sbjct: 252 PDEARRAESRSR 263
>gi|147834707|emb|CAN70556.1| hypothetical protein VITISV_016468 [Vitis vinifera]
Length = 257
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 137/252 (54%), Positives = 180/252 (71%), Gaps = 6/252 (2%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTE 70
+DG E+G+KRQR+++ P F + +S F P YG QPP FPVVRLRGLPF+CT+
Sbjct: 8 SDGYEIGSKRQRMMESNPYFAVSSSASGFQ---PYGYGSGFQPPTFPVVRLRGLPFNCTD 64
Query: 71 VDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130
+D+ +FF GLDIVDVL V+K+ +F+GEA+ V +Q DFALQR+RQNMGRRYVEVFR K
Sbjct: 65 IDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVEVFRCK 124
Query: 131 RQEYYKAIANEVS--DVRGGSPHRSIPRAKSHD-EGKDSAVHTGILRLRGLPFSAGKDDI 187
+Q+YY A+A+EV+ + H S P ++S KD HT IL+LRGLPFS K I
Sbjct: 125 KQDYYHAVASEVNYEGIYDNDFHGSPPPSRSKRFSDKDQMEHTEILKLRGLPFSVKKSQI 184
Query: 188 MDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
++FF DF L +D +HI DG+ TGEA+VEFA+AE++K AM KD+MT+GSRY+ELFPS+
Sbjct: 185 LEFFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELFPST 244
Query: 248 HEEMDEALSRGR 259
+E A SR R
Sbjct: 245 PDEARRAESRSR 256
>gi|255561415|ref|XP_002521718.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
gi|223539109|gb|EEF40705.1| heterogeneous nuclear ribonucleoprotein, putative [Ricinus
communis]
Length = 264
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 140/252 (55%), Positives = 182/252 (72%), Gaps = 6/252 (2%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTE 70
+DG E+G+KR R+++ P F + SS F P YG Q PFPVVRLRGLPF+CT+
Sbjct: 15 SDGYEVGSKRPRMMESNPYFAVSGGSSGFQ---PYGYGGGFQSAPFPVVRLRGLPFNCTD 71
Query: 71 VDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130
+D+ +FF GLDIVDVL V+KN +FTGEAF V +QV+FALQR+RQNMGRRYVEVFR K
Sbjct: 72 IDIFKFFAGLDIVDVLLVNKNGRFTGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCK 131
Query: 131 RQEYYKAIANEVS--DVRGGSPHRSIPRAKSHD-EGKDSAVHTGILRLRGLPFSAGKDDI 187
RQ+YY A+A EV+ + H S P +K+ KD +T IL++RGLPFSA K +I
Sbjct: 132 RQDYYNAVAAEVNYEGIYDTDYHGSPPPSKAKRFSDKDQLEYTEILKMRGLPFSAKKPEI 191
Query: 188 MDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
++FFK+F L ED IHI DG+ TGEA+VEFA+A+++K AM+KD+MT+GSRY+ELFPS+
Sbjct: 192 IEFFKEFELVEDRIHIACRPDGKATGEAYVEFASADEAKRAMSKDKMTIGSRYVELFPST 251
Query: 248 HEEMDEALSRGR 259
+E A SR R
Sbjct: 252 PDEARRAESRSR 263
>gi|356559210|ref|XP_003547893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Glycine
max]
Length = 264
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/256 (53%), Positives = 181/256 (70%), Gaps = 14/256 (5%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTE 70
+DG E+G+KRQR+++ P F SS N P Y QPPPFPVVRLRGLPF+CT+
Sbjct: 15 SDGYEVGSKRQRMMESNPYF----AVSSGTGNLPYGYAGGFQPPPFPVVRLRGLPFNCTD 70
Query: 71 VDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130
+D+ +FF GL IVDVL V+K+ +F+GEAF V +QV+FALQR+RQNMGRRYVEVFR K
Sbjct: 71 IDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCK 130
Query: 131 RQEYYKAIANEV-------SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 183
+Q+YY A+A E+ +D +G SP S R+K ++ KD T IL++RGLPF
Sbjct: 131 KQDYYNAVAAEIKYEGIYDNDYQGSSPPPS--RSKRFND-KDQMECTEILKMRGLPFQVT 187
Query: 184 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 243
K I++FFKDF L ED +HI DG+ TGEA+VEF +AE++K AM+KD+MT+GSRY+EL
Sbjct: 188 KSQIVEFFKDFKLIEDRVHIACRPDGKSTGEAYVEFVSAEEAKRAMSKDKMTIGSRYVEL 247
Query: 244 FPSSHEEMDEALSRGR 259
FPS+ +E A SR R
Sbjct: 248 FPSTPDEARRAESRSR 263
>gi|356531343|ref|XP_003534237.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Glycine max]
Length = 257
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/256 (53%), Positives = 180/256 (70%), Gaps = 14/256 (5%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTE 70
+DG E+G+KRQR+++ P F SS N P Y QPPPFPVVRLRGLPF+CT+
Sbjct: 8 SDGYEVGSKRQRMMESNPYF----AVSSGTGNLPYGYAGGFQPPPFPVVRLRGLPFNCTD 63
Query: 71 VDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130
+D+ +FF GL IVDVL V+K+ +F+GEAF V +QV+FALQR+RQNMGRRYVEVFR K
Sbjct: 64 IDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCK 123
Query: 131 RQEYYKAIANEV-------SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 183
+Q+YY A+A E+ +D G SP S R K ++ KD +T IL++RGLPF
Sbjct: 124 KQDYYNAVAGEINYEGIYDNDYHGSSPPPS--RLKRFND-KDQMEYTEILKMRGLPFQVT 180
Query: 184 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 243
K I++FFKDF L ED +HI DG+ TGEA+VEF +AE++K AM+KD+MT+GSRY+EL
Sbjct: 181 KSQIVEFFKDFKLIEDRVHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVEL 240
Query: 244 FPSSHEEMDEALSRGR 259
FPS+ +E A SR R
Sbjct: 241 FPSTPDEARRAESRSR 256
>gi|356531341|ref|XP_003534236.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Glycine max]
Length = 264
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/256 (53%), Positives = 180/256 (70%), Gaps = 14/256 (5%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTE 70
+DG E+G+KRQR+++ P F SS N P Y QPPPFPVVRLRGLPF+CT+
Sbjct: 15 SDGYEVGSKRQRMMESNPYF----AVSSGTGNLPYGYAGGFQPPPFPVVRLRGLPFNCTD 70
Query: 71 VDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130
+D+ +FF GL IVDVL V+K+ +F+GEAF V +QV+FALQR+RQNMGRRYVEVFR K
Sbjct: 71 IDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCK 130
Query: 131 RQEYYKAIANEV-------SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 183
+Q+YY A+A E+ +D G SP S R K ++ KD +T IL++RGLPF
Sbjct: 131 KQDYYNAVAGEINYEGIYDNDYHGSSPPPS--RLKRFND-KDQMEYTEILKMRGLPFQVT 187
Query: 184 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 243
K I++FFKDF L ED +HI DG+ TGEA+VEF +AE++K AM+KD+MT+GSRY+EL
Sbjct: 188 KSQIVEFFKDFKLIEDRVHIACRPDGKATGEAYVEFVSAEEAKRAMSKDKMTIGSRYVEL 247
Query: 244 FPSSHEEMDEALSRGR 259
FPS+ +E A SR R
Sbjct: 248 FPSTPDEARRAESRSR 263
>gi|449434084|ref|XP_004134826.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 263
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 179/253 (70%), Gaps = 9/253 (3%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPP--PFPVVRLRGLPFDC 68
+DG E+G+KRQR+++ P F + ++ F YGY S PP FPVVRLRGLPF+C
Sbjct: 15 SDGYEVGSKRQRMMEPNPYFAVSSSTAGFQ-----PYGYGSFPPTHAFPVVRLRGLPFNC 69
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
T++D+ +FF GLDIVDVL V+KN +F GEAF V +QV+FALQR+RQNMGRRYVEVFR
Sbjct: 70 TDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFR 129
Query: 129 SKRQEYYKAIANEVS--DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 186
KRQ+YY A+A EV+ + H S P + KD +T IL+LRGLPFS K +
Sbjct: 130 CKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSN 189
Query: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246
I++FF +F L+ED IHI DG+ TGEA+VEFA+AE++K AM+KD+MT+GSRY+ELFPS
Sbjct: 190 IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPS 249
Query: 247 SHEEMDEALSRGR 259
+ E A SR R
Sbjct: 250 TPNEARRAESRSR 262
>gi|449491253|ref|XP_004158841.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cucumis
sativus]
Length = 256
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 138/253 (54%), Positives = 179/253 (70%), Gaps = 9/253 (3%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPP--PFPVVRLRGLPFDC 68
+DG E+G+KRQR+++ P F + ++ F YGY S PP FPVVRLRGLPF+C
Sbjct: 8 SDGYEVGSKRQRMMEPNPYFAVSSSTAGFQ-----PYGYGSFPPTHAFPVVRLRGLPFNC 62
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
T++D+ +FF GLDIVDVL V+KN +F GEAF V +QV+FALQR+RQNMGRRYVEVFR
Sbjct: 63 TDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFR 122
Query: 129 SKRQEYYKAIANEVS--DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 186
KRQ+YY A+A EV+ + H S P + KD +T IL+LRGLPFS K +
Sbjct: 123 CKRQDYYNAVAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVTKSN 182
Query: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246
I++FF +F L+ED IHI DG+ TGEA+VEFA+AE++K AM+KD+MT+GSRY+ELFPS
Sbjct: 183 IIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASAEEAKRAMSKDKMTIGSRYVELFPS 242
Query: 247 SHEEMDEALSRGR 259
+ E A SR R
Sbjct: 243 TPNEARRAESRSR 255
>gi|296088657|emb|CBI37648.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/245 (53%), Positives = 170/245 (69%), Gaps = 23/245 (9%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTE 70
+DG E+G+KRQR+++ P F + +S F P YG QPP FPVVRLRGLPF+CT+
Sbjct: 15 SDGYEIGSKRQRMMESNPYFAVSSSASGFQ---PYGYGSGFQPPTFPVVRLRGLPFNCTD 71
Query: 71 VDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130
+D+ +FF GLDIVDVL V+K+ +F+GEA+ V +Q DFALQR+RQNMGRRYVEVFR K
Sbjct: 72 IDIFKFFAGLDIVDVLLVNKSGRFSGEAYVVFAGSMQADFALQRDRQNMGRRYVEVFRCK 131
Query: 131 RQEYYKAIANE-VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 189
+Q+YY A+A+E SD KD HT IL+LRGLPFS K I++
Sbjct: 132 KQDYYHAVASERFSD-------------------KDQMEHTEILKLRGLPFSVKKSQILE 172
Query: 190 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 249
FF DF L +D +HI DG+ TGEA+VEFA+AE++K AM KD+MT+GSRY+ELFPS+ +
Sbjct: 173 FFGDFELGDDKVHIACRPDGKATGEAYVEFASAEEAKKAMGKDKMTIGSRYVELFPSTPD 232
Query: 250 EMDEA 254
E A
Sbjct: 233 EARRA 237
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RLRGLPF+ DI FF + + + +N GR +GEA+V FA + + A+ +
Sbjct: 59 VVRLRGLPFNCTDIDIFKFFAGLDIVD---VLLVNKSGRFSGEAYVVFAGSMQADFALQR 115
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR +G RY+E+F ++ A++ R
Sbjct: 116 DRQNMGRRYVEVFRCKKQDYYHAVASER 143
>gi|238013930|gb|ACR38000.1| unknown [Zea mays]
gi|413946698|gb|AFW79347.1| RNA binding protein [Zea mays]
Length = 295
Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 131/259 (50%), Positives = 170/259 (65%), Gaps = 19/259 (7%)
Query: 18 AKRQRLIDQGPSFYG-----TPPSSSFMYNP-----PPAYGYVSQPPPFPVVRLRGLPFD 67
+KR R+++ GP ++G T +S Y P G + FP VRLRGLPFD
Sbjct: 38 SKRSRIVEPGPPYFGAMGSNTGGASGGFYQPFNSSNLAGAGASTGIQNFPGVRLRGLPFD 97
Query: 68 CTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
C ++D+ +FF GLDIVD L V+KN +FTGEAF V +Q +FAL RNRQNMGRRYVEVF
Sbjct: 98 CNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVF 157
Query: 128 RSKRQEYYKAIANEVSDVRGG-------SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 180
R K+QEYY AIANEVS +GG K E K S +T +L+LRGLP+
Sbjct: 158 RCKKQEYYSAIANEVS--QGGYFESECRRSSPPPRPPKKTAEDKGSMEYTEVLKLRGLPY 215
Query: 181 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240
SA +DI+ FF ++ L+E+++HI + SDG+ TGEAFVEF AE +K AM KD+MT+G+RY
Sbjct: 216 SATTEDIIKFFLEYELTEENVHIAIRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRY 275
Query: 241 IELFPSSHEEMDEALSRGR 259
+ELFPS+ EE A +RGR
Sbjct: 276 VELFPSTPEEASRARTRGR 294
>gi|115484017|ref|NP_001065670.1| Os11g0133600 [Oryza sativa Japonica Group]
gi|77548595|gb|ABA91392.1| heterogeneous nuclear ribonucleoprotein, putative, expressed [Oryza
sativa Japonica Group]
gi|113644374|dbj|BAF27515.1| Os11g0133600 [Oryza sativa Japonica Group]
gi|215764972|dbj|BAG86669.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222615462|gb|EEE51594.1| hypothetical protein OsJ_32846 [Oryza sativa Japonica Group]
Length = 298
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/256 (52%), Positives = 169/256 (66%), Gaps = 16/256 (6%)
Query: 18 AKRQRLIDQGPSFYGTPPSS-----SFMYNP----PPAYGYVSQPPPFPVVRLRGLPFDC 68
+KR R+++ P ++G SS S Y P P G S FP VRLRGLPFDC
Sbjct: 44 SKRARMMEPAPPYFGAMGSSAAGGTSAFYQPYGANLPGAGANSAIQNFPGVRLRGLPFDC 103
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ +FF GLDIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR
Sbjct: 104 DDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFR 163
Query: 129 SKRQEYYKAIANEVSDVRGG-----SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 183
K+QEYY AIA EV+ +GG H PR K E K S +T +L+LRGLP+SA
Sbjct: 164 CKKQEYYSAIAAEVN--QGGFFDSEYRHSPPPRPKKPAEDKSSMEYTEVLKLRGLPYSAT 221
Query: 184 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 243
+DI+ FF ++ L+E+++HI DG+ TGEAFVEF AE +K AM KD+MT+G+RY+EL
Sbjct: 222 TEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVEL 281
Query: 244 FPSSHEEMDEALSRGR 259
FPS+ EE A SR R
Sbjct: 282 FPSTPEEASRAKSRAR 297
>gi|168066869|ref|XP_001785353.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663050|gb|EDQ49838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 239
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/256 (50%), Positives = 173/256 (67%), Gaps = 31/256 (12%)
Query: 15 EMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVA 74
E+G+KRQRLID G S P G+ P PVVRLRGLPF+C++ DV
Sbjct: 2 EVGSKRQRLIDGGSS-------------PVLLQGH---PRSLPVVRLRGLPFNCSDSDVF 45
Query: 75 EFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY 134
+FF GLD+VDVL V N +F+GEA+ V G P+QVD+ALQ+NR N+GRRY+EVFR K+Q+Y
Sbjct: 46 DFFAGLDVVDVLLVRMNGRFSGEAYVVFGAPVQVDYALQKNRHNIGRRYIEVFRCKKQDY 105
Query: 135 YKAIANEVSDVRGGSPHRSIP-------------RAKSHDEGKDSAVHTGILRLRGLPFS 181
Y A+A EV+D R ++P +A S + KD TG+++LRGLPFS
Sbjct: 106 YHAVAAEVADTR--CIDSTLPLHVLNNNSSSASAKAPSRNNTKDHLNFTGVVKLRGLPFS 163
Query: 182 AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 241
A K D+MDFF++F L ++ +HI ++SDGR TGEAFV+F +A +K+AM KD+MT+GSRY+
Sbjct: 164 ATKSDVMDFFREFELHDEHVHIMLHSDGRTTGEAFVDFGSASKAKSAMNKDKMTMGSRYV 223
Query: 242 ELFPSSHEEMDEALSR 257
E+FPSS EE A +R
Sbjct: 224 EIFPSSREEATRAATR 239
>gi|413946699|gb|AFW79348.1| hypothetical protein ZEAMMB73_203104 [Zea mays]
Length = 242
Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 120/211 (56%), Positives = 151/211 (71%), Gaps = 9/211 (4%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
FP VRLRGLPFDC ++D+ +FF GLDIVD L V+KN +FTGEAF V +Q +FAL RN
Sbjct: 33 FPGVRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRN 92
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG-------SPHRSIPRAKSHDEGKDSAV 168
RQNMGRRYVEVFR K+QEYY AIANEVS +GG K E K S
Sbjct: 93 RQNMGRRYVEVFRCKKQEYYSAIANEVS--QGGYFESECRRSSPPPRPPKKTAEDKGSME 150
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+T +L+LRGLP+SA +DI+ FF ++ L+E+++HI + SDG+ TGEAFVEF AE +K A
Sbjct: 151 YTEVLKLRGLPYSATTEDIIKFFLEYELTEENVHIAIRSDGKATGEAFVEFPTAEVAKTA 210
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
M KD+MT+G+RY+ELFPS+ EE A +RGR
Sbjct: 211 MCKDKMTIGTRYVELFPSTPEEASRARTRGR 241
>gi|346703322|emb|CBX25419.1| hypothetical_protein [Oryza glaberrima]
Length = 291
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/257 (52%), Positives = 170/257 (66%), Gaps = 17/257 (6%)
Query: 18 AKRQRLIDQGPSFYGTPPSS-----SFMYNP----PPAYGYVSQPPPFPVVRLRGLPFDC 68
+KR R+++ P ++G SS S Y P P G S FP VRLRGLPFDC
Sbjct: 36 SKRARMMEPAPPYFGAMGSSAAGGTSAFYQPYGANLPGAGANSAIQNFPGVRLRGLPFDC 95
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ +FF GLDIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR
Sbjct: 96 DDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFR 155
Query: 129 SKRQEYYKAIANEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSA 182
K+QEYY AIA EV+ +GG S +R PR K E K S +T +L+LRGLP+SA
Sbjct: 156 CKKQEYYSAIAAEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSA 213
Query: 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
+DI+ FF ++ L+E+++HI DG+ TGEAFVEF AE +K AM KD+MT+G+RY+E
Sbjct: 214 TTEDIIKFFVEYELTEENVHIAYRPDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVE 273
Query: 243 LFPSSHEEMDEALSRGR 259
LFPS+ EE SR R
Sbjct: 274 LFPSTPEEASRVKSRAR 290
>gi|357143320|ref|XP_003572879.1| PREDICTED: G-rich sequence factor 1-like isoform 2 [Brachypodium
distachyon]
Length = 274
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/257 (52%), Positives = 173/257 (67%), Gaps = 17/257 (6%)
Query: 18 AKRQRLIDQGPSFYGT-----PPSSSFMYNP----PPAYGYVSQPPPFPVVRLRGLPFDC 68
+KR R+++ GP ++G S S Y P G S FP VRLRGLPFDC
Sbjct: 19 SKRARMMEPGPPYFGAMGSNTGGSGSGFYAPYSGNLAGAGVNSGIQSFPGVRLRGLPFDC 78
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ +FF GLDIVD L VHKN +F+GEAF V +Q +FAL RNRQNMGRRYVEVFR
Sbjct: 79 EDLDIIKFFVGLDIVDCLLVHKNGRFSGEAFVVFPSTMQAEFALHRNRQNMGRRYVEVFR 138
Query: 129 SKRQEYYKAIANEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSA 182
K+QEYY A+A+EV+ +GG S +R PR K E K S +T +L+LRGLP+SA
Sbjct: 139 CKKQEYYSAVASEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMDYTEVLKLRGLPYSA 196
Query: 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
+DI+ FF ++ L+ED++HI SDG+ TGEAFVEF AE +K AM KD+MT+G+RY+E
Sbjct: 197 TIEDIIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVE 256
Query: 243 LFPSSHEEMDEALSRGR 259
LFPS+ EE A SRGR
Sbjct: 257 LFPSTPEEASRAKSRGR 273
>gi|357143317|ref|XP_003572878.1| PREDICTED: G-rich sequence factor 1-like isoform 1 [Brachypodium
distachyon]
Length = 292
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/257 (52%), Positives = 173/257 (67%), Gaps = 17/257 (6%)
Query: 18 AKRQRLIDQGPSFYGT-----PPSSSFMYNP----PPAYGYVSQPPPFPVVRLRGLPFDC 68
+KR R+++ GP ++G S S Y P G S FP VRLRGLPFDC
Sbjct: 37 SKRARMMEPGPPYFGAMGSNTGGSGSGFYAPYSGNLAGAGVNSGIQSFPGVRLRGLPFDC 96
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ +FF GLDIVD L VHKN +F+GEAF V +Q +FAL RNRQNMGRRYVEVFR
Sbjct: 97 EDLDIIKFFVGLDIVDCLLVHKNGRFSGEAFVVFPSTMQAEFALHRNRQNMGRRYVEVFR 156
Query: 129 SKRQEYYKAIANEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSA 182
K+QEYY A+A+EV+ +GG S +R PR K E K S +T +L+LRGLP+SA
Sbjct: 157 CKKQEYYSAVASEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMDYTEVLKLRGLPYSA 214
Query: 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
+DI+ FF ++ L+ED++HI SDG+ TGEAFVEF AE +K AM KD+MT+G+RY+E
Sbjct: 215 TIEDIIKFFVEYELTEDNVHIAYRSDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVE 274
Query: 243 LFPSSHEEMDEALSRGR 259
LFPS+ EE A SRGR
Sbjct: 275 LFPSTPEEASRAKSRGR 291
>gi|223944441|gb|ACN26304.1| unknown [Zea mays]
Length = 284
Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 126/255 (49%), Positives = 168/255 (65%), Gaps = 18/255 (7%)
Query: 21 QRLIDQGPSFYG-----TPPSSSFMYNP----PPAYGYVSQPPPFPVVRLRGLPFDCTEV 71
+R+ + GP ++G T +S Y P G + FP VRLRGLPFDC ++
Sbjct: 31 KRIFEPGPPYFGAMGSNTGGASGGFYQPFNSNLAGAGASTGIQNFPGVRLRGLPFDCNDI 90
Query: 72 DVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 131
D+ +FF GLDIVD L V+KN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR K+
Sbjct: 91 DICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKK 150
Query: 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHD-------EGKDSAVHTGILRLRGLPFSAGK 184
EYY+AIANEVS +GG R+ E K S +T +L+LRGLP+SA
Sbjct: 151 LEYYRAIANEVS--QGGYFESEYRRSSPPLSPPKKPAEDKGSMEYTEVLKLRGLPYSATT 208
Query: 185 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
+DI+ FF ++ L+E+++HI ++SDG+ TGEAFVEF E +K M KD+MT+G+RY+ELF
Sbjct: 209 EDIIKFFLEYELTEENVHIAISSDGKATGEAFVEFPTTEVAKTVMCKDKMTIGTRYVELF 268
Query: 245 PSSHEEMDEALSRGR 259
PS+ EE+ A +RGR
Sbjct: 269 PSTPEEVSRARTRGR 283
>gi|297612598|ref|NP_001066073.2| Os12g0131000 [Oryza sativa Japonica Group]
gi|255670013|dbj|BAF29092.2| Os12g0131000 [Oryza sativa Japonica Group]
Length = 292
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/257 (51%), Positives = 170/257 (66%), Gaps = 17/257 (6%)
Query: 18 AKRQRLIDQGPSFYGTPPSS-----SFMYNP----PPAYGYVSQPPPFPVVRLRGLPFDC 68
+KR R+++ P ++G SS S Y P P G S FP VRLRGLPFDC
Sbjct: 37 SKRARMMEPAPPYFGAMGSSAAGGTSAFYQPYGTNLPGAGANSAIQNFPGVRLRGLPFDC 96
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ +FF GLDIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR
Sbjct: 97 DDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFR 156
Query: 129 SKRQEYYKAIANEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSA 182
K+QEYY AIA EV+ +GG S +R PR K E K S +T +L+LRGLP+SA
Sbjct: 157 CKKQEYYSAIAAEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSA 214
Query: 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
+DI+ FF ++ L+++++HI DG+ TGEA+VEF AE K AM KD+MT+G+RY+E
Sbjct: 215 TTEDIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPTAEVVKTAMCKDKMTIGTRYVE 274
Query: 243 LFPSSHEEMDEALSRGR 259
LFPS+ EE A SR R
Sbjct: 275 LFPSTPEEASRAKSRVR 291
>gi|222616578|gb|EEE52710.1| hypothetical protein OsJ_35118 [Oryza sativa Japonica Group]
Length = 291
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/257 (51%), Positives = 170/257 (66%), Gaps = 17/257 (6%)
Query: 18 AKRQRLIDQGPSFYGTPPSS-----SFMYNP----PPAYGYVSQPPPFPVVRLRGLPFDC 68
+KR R+++ P ++G SS S Y P P G S FP VRLRGLPFDC
Sbjct: 36 SKRARMMEPAPPYFGAMGSSAAGGTSAFYQPYGTNLPGAGANSAIQNFPGVRLRGLPFDC 95
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ +FF GLDIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR
Sbjct: 96 DDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFR 155
Query: 129 SKRQEYYKAIANEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSA 182
K+QEYY AIA EV+ +GG S +R PR K E K S +T +L+LRGLP+SA
Sbjct: 156 CKKQEYYSAIAAEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSA 213
Query: 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
+DI+ FF ++ L+++++HI DG+ TGEA+VEF AE K AM KD+MT+G+RY+E
Sbjct: 214 TTEDIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPTAEVVKTAMCKDKMTIGTRYVE 273
Query: 243 LFPSSHEEMDEALSRGR 259
LFPS+ EE A SR R
Sbjct: 274 LFPSTPEEASRAKSRVR 290
>gi|239052941|ref|NP_001131830.2| uncharacterized protein LOC100193205 [Zea mays]
gi|223943183|gb|ACN25675.1| unknown [Zea mays]
gi|238908614|gb|ACF80415.2| unknown [Zea mays]
Length = 241
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/211 (55%), Positives = 152/211 (72%), Gaps = 9/211 (4%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
FP VRLRGLPFDC ++D+ +FF GLDIVD L V+KN +FTGEAF V +Q +FAL RN
Sbjct: 32 FPGVRLRGLPFDCNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRN 91
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHD-------EGKDSAV 168
RQNMGRRYVEVFR K+ EYY+AIANEVS +GG R+ E K S
Sbjct: 92 RQNMGRRYVEVFRCKKLEYYRAIANEVS--QGGYFESEYRRSSPPLSPPKKPAEDKGSME 149
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+T +L+LRGLP+SA +DI+ FF ++ L+E+++HI ++SDG+ TGEAFVEF E +K
Sbjct: 150 YTEVLKLRGLPYSATTEDIIKFFLEYELTEENVHIAISSDGKATGEAFVEFPTTEVAKTV 209
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
M KD+MT+G+RY+ELFPS+ EE+ A +RGR
Sbjct: 210 MCKDKMTIGTRYVELFPSTPEEVSRARTRGR 240
>gi|346703709|emb|CBX24377.1| hypothetical_protein [Oryza glaberrima]
Length = 291
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/257 (51%), Positives = 171/257 (66%), Gaps = 17/257 (6%)
Query: 18 AKRQRLIDQGPSFYGTPPSS-----SFMYNP----PPAYGYVSQPPPFPVVRLRGLPFDC 68
+KR R+++ P ++G SS S Y P P G S FP VRLRGLPFDC
Sbjct: 36 SKRARMMEPAPPYFGAMGSSAAGGTSAFYQPYGTNLPGAGANSAIQNFPGVRLRGLPFDC 95
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ +FF GLDIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVEVFR
Sbjct: 96 DDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEVFR 155
Query: 129 SKRQEYYKAIANEVSDVRGG---SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSA 182
K+QEYY AIA EV+ +GG S +R PR K E K S +T +L+LRGLP+SA
Sbjct: 156 CKKQEYYSAIAAEVN--QGGFFDSEYRHSPPPPRPKKPAEDKSSMEYTEVLKLRGLPYSA 213
Query: 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
++I+ FF ++ L+++++HI DG+ TGEA+VEF AE +K AM KD+MT+G+RY+E
Sbjct: 214 TTEEIIKFFVEYELTDENVHIVYRPDGKATGEAYVEFPTAEVAKTAMCKDKMTIGTRYVE 273
Query: 243 LFPSSHEEMDEALSRGR 259
LFPS+ EE A SR R
Sbjct: 274 LFPSTPEEASRAKSRVR 290
>gi|226500358|ref|NP_001148837.1| LOC100282455 [Zea mays]
gi|195622512|gb|ACG33086.1| RNA binding protein [Zea mays]
gi|238009718|gb|ACR35894.1| unknown [Zea mays]
Length = 303
Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 120/210 (57%), Positives = 151/210 (71%), Gaps = 8/210 (3%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
FP VRLRGLPFDC ++DV +FF GLDIVD L V+KN +FTGEAF V +Q +FAL R+
Sbjct: 95 FPCVRLRGLPFDCNDIDVCKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQAEFALHRD 154
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG------SPHRSIPRAKSHDEGKDSAVH 169
RQNMGRRYVEVFR K+ EYY AIANEV+ +GG PR + E K S +
Sbjct: 155 RQNMGRRYVEVFRCKKHEYYCAIANEVN--QGGYFEPEYRRSPPPPRPRKPSEDKGSMEY 212
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T +L+LRGLP+SA +DI+ FF ++ L+E+++HI SDG+ TGEAFVEF AE +K AM
Sbjct: 213 TEVLKLRGLPYSATTEDIIKFFLEYELAEENVHIAYRSDGKATGEAFVEFPTAEVAKTAM 272
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
KD+MT+G+RY+ELFPS+ EE A SRGR
Sbjct: 273 CKDKMTIGTRYVELFPSTPEEASRAKSRGR 302
>gi|238006754|gb|ACR34412.1| unknown [Zea mays]
Length = 251
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/210 (57%), Positives = 151/210 (71%), Gaps = 8/210 (3%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
FP VRLRGLPFDC ++DV +FF GLDIVD L V+KN +FTGEAF V +Q +FAL R+
Sbjct: 43 FPCVRLRGLPFDCNDIDVCKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQAEFALHRD 102
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG------SPHRSIPRAKSHDEGKDSAVH 169
RQNMGRRYVEVFR K+ EYY AIANEV+ +GG PR + E K S +
Sbjct: 103 RQNMGRRYVEVFRCKKHEYYCAIANEVN--QGGYFEPEYRRSPPPPRPRKPSEDKGSMEY 160
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T +L+LRGLP+SA +DI+ FF ++ L+E+++HI SDG+ TGEAFVEF AE +K AM
Sbjct: 161 TEVLKLRGLPYSATTEDIIKFFLEYELAEENVHIAYRSDGKATGEAFVEFPTAEVAKTAM 220
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
KD+MT+G+RY+ELFPS+ EE A SRGR
Sbjct: 221 CKDKMTIGTRYVELFPSTPEEASRAKSRGR 250
>gi|357517683|ref|XP_003629130.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
gi|355523152|gb|AET03606.1| Heterogeneous nuclear ribonucleoprotein F [Medicago truncatula]
Length = 290
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/260 (48%), Positives = 171/260 (65%), Gaps = 20/260 (7%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP----VVRLRGLPF 66
+DG E+G+KRQR+++ P F + + S+ + YGY P VVRLRGLPF
Sbjct: 39 SDGYEVGSKRQRMMESNPYFAVSSGTGSYQH-----YGYAGGGFQPPPPFPVVRLRGLPF 93
Query: 67 DCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 126
+CT++D+ +FF GL IVDVL V+K+ +F+GEAF V +QV+FALQR+RQNMGRRYVEV
Sbjct: 94 NCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEV 153
Query: 127 FRSKRQEYYKAIANEV-------SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLP 179
FR K+Q+YY A+A E+ +D +G P P K+ +T IL++RGLP
Sbjct: 154 FRCKKQDYYNAVAGEINYEGIYDNDYQGSPP----PSRSKRFSDKEQMDYTEILKMRGLP 209
Query: 180 FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 239
F K I+DFFKD+ L E +HI DG+ TGEA+VEF + +++K AM KD+MT+GSR
Sbjct: 210 FLVTKSQIIDFFKDYKLIEGRVHIACRPDGKATGEAYVEFVSPDEAKRAMFKDKMTIGSR 269
Query: 240 YIELFPSSHEEMDEALSRGR 259
Y+ELFPS+ +E A SR R
Sbjct: 270 YVELFPSTPDEARRAESRSR 289
>gi|218185179|gb|EEC67606.1| hypothetical protein OsI_34981 [Oryza sativa Indica Group]
Length = 270
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/251 (49%), Positives = 159/251 (63%), Gaps = 26/251 (10%)
Query: 18 AKRQRLIDQGPSFYGTPPSS-----SFMYNP----PPAYGYVSQPPPFPVVRLRGLPFDC 68
+KR R+++ P ++G SS S Y P P G S FP VRLRGLPFDC
Sbjct: 36 SKRARMMEPAPPYFGAMGSSAAGGTSAFYQPYGANLPGAGANSAIQNFPGVRLRGLPFDC 95
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ +FF GLDIVD L VHKN +FTGEAF V +Q +FAL RNRQNMGRRYVE R
Sbjct: 96 DDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEFALHRNRQNMGRRYVEGCR 155
Query: 129 SKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIM 188
K+QEYY AIA A+ E K S +T +L+LRGLP+SA +DI+
Sbjct: 156 CKKQEYYSAIA-----------------AEKPAEDKSSMEYTEVLKLRGLPYSATTEDII 198
Query: 189 DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248
FF ++ L+E+++HI DG+ TGEAFVEF AE +K AM KD+MT+G+RY+ELFPS+
Sbjct: 199 KFFVEYELTEENVHIAYRPDGKATGEAFVEFPTAEVAKTAMCKDKMTIGTRYVELFPSTP 258
Query: 249 EEMDEALSRGR 259
EE A SR R
Sbjct: 259 EEASRAKSRAR 269
>gi|10177116|dbj|BAB10406.1| unnamed protein product [Arabidopsis thaliana]
Length = 248
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 161/243 (66%), Gaps = 15/243 (6%)
Query: 10 GADGREMGAKRQRLIDQGPSF-YGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDC 68
G+ G E+G+KRQR++ P GT P+S P +GY FPVVRLRGLPF+C
Sbjct: 3 GSGGYEVGSKRQRMMQSNPYLAVGTGPTSF------PPFGYAGG---FPVVRLRGLPFNC 53
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ EFF GL+IVDVL V KN KF+GEAF V P+QV+ ALQR+R NMGRRYVEVFR
Sbjct: 54 ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 113
Query: 129 SKRQEYYKAIANEVS----DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGK 184
+Q+YY A+A E +VR P RAK E K+ +T +L++RGLP+S K
Sbjct: 114 CSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNK 172
Query: 185 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
I++FF + + + + + DG+ TGEAFVEF E+++ AMAKD+M++GSRY+ELF
Sbjct: 173 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 232
Query: 245 PSS 247
P++
Sbjct: 233 PTT 235
>gi|145359708|ref|NP_201402.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332010757|gb|AED98140.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 255
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 161/243 (66%), Gaps = 15/243 (6%)
Query: 10 GADGREMGAKRQRLIDQGPSF-YGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDC 68
G+ G E+G+KRQR++ P GT P+S P +GY FPVVRLRGLPF+C
Sbjct: 10 GSGGYEVGSKRQRMMQSNPYLAVGTGPTSF------PPFGYAGG---FPVVRLRGLPFNC 60
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ EFF GL+IVDVL V KN KF+GEAF V P+QV+ ALQR+R NMGRRYVEVFR
Sbjct: 61 ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 120
Query: 129 SKRQEYYKAIANEVS----DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGK 184
+Q+YY A+A E +VR P RAK E K+ +T +L++RGLP+S K
Sbjct: 121 CSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNK 179
Query: 185 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
I++FF + + + + + DG+ TGEAFVEF E+++ AMAKD+M++GSRY+ELF
Sbjct: 180 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 239
Query: 245 PSS 247
P++
Sbjct: 240 PTT 242
>gi|297797787|ref|XP_002866778.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297312613|gb|EFH43037.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 255
Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/243 (48%), Positives = 160/243 (65%), Gaps = 15/243 (6%)
Query: 10 GADGREMGAKRQRLIDQGPSF-YGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDC 68
G+ G E+G+KRQR++ P GT P+S P +GY FPVVRLRGLPF+C
Sbjct: 10 GSGGYEVGSKRQRMMQSNPYLAVGTGPTSF------PPFGYACG---FPVVRLRGLPFNC 60
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
++D+ +FF GLDIVDVL V KN KF+GEAF V P+QV+ +LQR+R NMGRRYVEVFR
Sbjct: 61 ADIDIFKFFSGLDIVDVLLVSKNGKFSGEAFVVFAGPMQVEISLQRDRHNMGRRYVEVFR 120
Query: 129 SKRQEYYKAIANEVS----DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGK 184
+Q+YY A+A E + R P RAK E K+ +T +L++RGLP+S K
Sbjct: 121 CSKQDYYNAVAAEEGAYEYEARASPPPTVPSRAKRFSE-KEKLEYTEVLKMRGLPYSVNK 179
Query: 185 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
I++FF + + E + + DG+ TGEAFVEF E+++ AMAKD+M++GSRY+ELF
Sbjct: 180 PQIIEFFSGYKVIEGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 239
Query: 245 PSS 247
P++
Sbjct: 240 PTT 242
>gi|255071701|ref|XP_002499525.1| predicted protein [Micromonas sp. RCC299]
gi|226514787|gb|ACO60783.1| predicted protein [Micromonas sp. RCC299]
Length = 251
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 153/236 (64%), Gaps = 34/236 (14%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
FPVVRLRGLPF+ E D+ EFF GLD VDVL V ++ + TGEA+ + P+Q+DFALQ+N
Sbjct: 18 FPVVRLRGLPFNAGEFDILEFFQGLDPVDVLIVRRDGRATGEAYVLFANPMQMDFALQKN 77
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEV-------SDVRGGSPHRSIPRAKSH-------- 160
R MGRRY+EVFRSK+Q+YY A+A+ V +D GG + H
Sbjct: 78 RGPMGRRYIEVFRSKKQDYYYAVAHAVNEPTPHGTDFYGGD--NGLASGAGHLAHVAGVG 135
Query: 161 ------DEGKDSAV-----HTGILRLRGLPFSAGKDDIMDFFKDFVLS------EDSIHI 203
G +AV HTG+L++RGLPFSA KDDI+ F+ D LS DSIHI
Sbjct: 136 GPAPPVPHGAPAAVRPPQEHTGVLKMRGLPFSATKDDIITFYDDPALSVTAPLTHDSIHI 195
Query: 204 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ DGRP+G AFVEFA+AED+KAAM++DR T+GSRY+ELFPSS EE A + GR
Sbjct: 196 VTSLDGRPSGMAFVEFASAEDAKAAMSRDRCTMGSRYVELFPSSREEATRAATSGR 251
>gi|303278009|ref|XP_003058298.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460955|gb|EEH58249.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 230
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 146/209 (69%), Gaps = 7/209 (3%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
FPVVRLRGLPF+ +E DV EFF GL+ VDVL V ++ + TGEA+ VL + ++ ALQ+N
Sbjct: 24 FPVVRLRGLPFNASEYDVQEFFQGLEPVDVLIVRRDGRATGEAYVVLANQMLMEVALQKN 83
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
R MGRRY+EVFRSK+Q+YY A++ V++ + + + + + A HTG+L+L
Sbjct: 84 RGPMGRRYIEVFRSKKQDYYHAVSIAVNEPD--YGNGNGGQGGGYYDNGPLAEHTGVLKL 141
Query: 176 RGLPFSAGKDDIMDFFKDFVLS-----EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
RGLPFSA KDDI+ FF D L DSIHI ++ DGRP+G AFVEF +AED+K AM
Sbjct: 142 RGLPFSATKDDIITFFDDKSLGVSPLVHDSIHIVLSVDGRPSGVAFVEFVSAEDAKTAMI 201
Query: 231 KDRMTLGSRYIELFPSSHEEMDEALSRGR 259
KDR ++G+RY+ELFPSS EE A + GR
Sbjct: 202 KDRSSMGTRYVELFPSSREEATRAATSGR 230
>gi|77553600|gb|ABA96396.1| heterogeneous nuclear ribonucleoprotein, putative, expressed [Oryza
sativa Japonica Group]
Length = 235
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 110/200 (55%), Positives = 139/200 (69%), Gaps = 8/200 (4%)
Query: 45 PAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGY 104
P G S FP VRLRGLPFDC ++D+ +FF GLDIVD L VHKN +FTGEAF V
Sbjct: 21 PGAGANSAIQNFPGVRLRGLPFDCDDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPS 80
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG---SPHR---SIPRAK 158
+Q +FAL RNRQNMGRRYVEVFR K+QEYY AIA EV+ +GG S +R PR K
Sbjct: 81 AMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIAAEVN--QGGFFDSEYRHSPPPPRPK 138
Query: 159 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 218
E K S +T +L+LRGLP+SA +DI+ FF ++ L+++++HI DG+ TGEA+VE
Sbjct: 139 KPAEDKSSMEYTEVLKLRGLPYSATTEDIIKFFVEYELTDENVHIVYRPDGKATGEAYVE 198
Query: 219 FANAEDSKAAMAKDRMTLGS 238
F AE K AM KD+MT+G+
Sbjct: 199 FPTAEVVKTAMCKDKMTIGT 218
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 163 GKDSAVHT--GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
G +SA+ G+ RLRGLPF DI FF + + + ++ +GR TGEAFV F
Sbjct: 24 GANSAIQNFPGV-RLRGLPFDCDDLDICKFFVGLDIVD---CLLVHKNGRFTGEAFVVFP 79
Query: 221 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 256
+A ++ A+ ++R +G RY+E+F +E A++
Sbjct: 80 SAMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSAIA 115
>gi|226501122|ref|NP_001148833.1| RNA binding protein [Zea mays]
gi|195622468|gb|ACG33064.1| RNA binding protein [Zea mays]
Length = 268
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 113/233 (48%), Positives = 147/233 (63%), Gaps = 19/233 (8%)
Query: 18 AKRQRLIDQGPSFYG-----TPPSSSFMYNP-----PPAYGYVSQPPPFPVVRLRGLPFD 67
+KR R+++ GP ++G T +S Y P G + FP VRLRGLPFD
Sbjct: 38 SKRSRIVEPGPPYFGAMGSNTGGASGGFYQPFNSSNLAGAGASTGIQNFPGVRLRGLPFD 97
Query: 68 CTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
C ++D+ +FF GLDIVD L V+KN +FTGEAF V +Q +FAL RNRQNMGRRYVEVF
Sbjct: 98 CNDIDICKFFVGLDIVDCLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVF 157
Query: 128 RSKRQEYYKAIANEVSDVRGG-------SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 180
R K+QEYY AIANEVS +GG K E K S +T +L+LRGLP+
Sbjct: 158 RCKKQEYYSAIANEVS--QGGYFESEYRRSSPPPRPPKKPAEDKGSMEYTEVLKLRGLPY 215
Query: 181 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
SA +DI+ FF ++ L+E+++HI + SDG+ TGEAFVEF AE +K A+ R
Sbjct: 216 SATTEDIIKFFLEYELTEENVHIAIRSDGKATGEAFVEFPTAEVAKTRCARIR 268
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 134 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI-----LRLRGLPFSAGKDDIM 188
Y+ A+ + GG P S+ G + TGI +RLRGLPF DI
Sbjct: 50 YFGAMGSNTGGASGGFYQ---PFNSSNLAG--AGASTGIQNFPGVRLRGLPFDCNDIDIC 104
Query: 189 DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248
FF + + + +N +GR TGEAFV F A ++ A+ ++R +G RY+E+F
Sbjct: 105 KFFVGLDIVD---CLLVNKNGRFTGEAFVVFPTAMQTEFALHRNRQNMGRRYVEVFRCKK 161
Query: 249 EEMDEALS 256
+E A++
Sbjct: 162 QEYYSAIA 169
>gi|299472433|emb|CBN77621.1| heterogeneous nuclear ribonucleoprotein, putative [Ectocarpus
siliculosus]
Length = 305
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 133/217 (61%), Gaps = 14/217 (6%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQ 113
PFP VRLRGLPF+ T DV FF GL +DV+ V + + + GEA VL +++ AL
Sbjct: 88 PFPCVRLRGLPFEATIDDVLRFFQGLVPLDVVMVTRADGRGAGEAIVVLPNLMEMQMALS 147
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDS------- 166
R++Q+MGRRY+E+F+SKR +YY A+ ++ G R H
Sbjct: 148 RDKQHMGRRYIEIFQSKRMDYYSAVVGQLQSQNMGGMQRQGGGGMGHGSMGGGGAGGLGP 207
Query: 167 ------AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
VHTG++R+RGLPFSA K D+++FF+ ++ED+I + DGR TGEAFV F+
Sbjct: 208 DGMAMPVVHTGVIRMRGLPFSATKQDVLNFFQGMPVTEDTIQFVVRGDGRVTGEAFVSFS 267
Query: 221 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ +S+AAM+++ +G+RY+ELF S+ EE+ ++R
Sbjct: 268 SPAESEAAMSRNGNHMGTRYVELFASTPEEIVRHMNR 304
>gi|388513407|gb|AFK44765.1| unknown [Medicago truncatula]
Length = 158
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/160 (52%), Positives = 110/160 (68%), Gaps = 9/160 (5%)
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS------DVRGGSPHRSIPRAKS 159
+QV+FALQR+RQNMGRRYVEVFR K+Q+YY A+A E++ D GSP S + S
Sbjct: 1 MQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAGEINYEGIYDDDYQGSPPPSRSKRFS 60
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
E D +T IL++RGLPF K I+DFFKD+ L E +HI DG+ TGEA+VEF
Sbjct: 61 DKEQMD---YTEILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKATGEAYVEF 117
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +++K AM KD+MT+GSRY+ELFPS+ +E A SR R
Sbjct: 118 VSPDEAKRAMFKDKMTIGSRYVELFPSTPDEARRAESRSR 157
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 34 PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHK 90
PPS S ++ Y ++++RGLPF T+ + +FF +++ +
Sbjct: 52 PPSRSKRFSDKEQMDYTE------ILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRP 105
Query: 91 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 137
+ K TGEA+ P + A+ +++ +G RYVE+F S E +A
Sbjct: 106 DGKATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELFPSTPDEARRA 152
>gi|219111791|ref|XP_002177647.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410532|gb|EEC50461.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 245
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 127/246 (51%), Gaps = 48/246 (19%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
PFP RLR LP+D D+ F GL ++DV+ + G+AF + P+ ALQR
Sbjct: 1 PFPCARLRNLPYDAALEDILILFQGLVVIDVVISSQ-----GDAFVIFANPMDFQMALQR 55
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANE--------VSDVRGGS----------------- 149
+RQ +GRR+VE+ + R EYY AIA + ++ + GGS
Sbjct: 56 DRQTIGRRFVEIVAATRSEYYDAIAKKSAGESASAMASLWGGSQGGMNSLPPQGGYGEGM 115
Query: 150 PHRSI------------------PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 191
H + P K G HTG LR+RGLPFSA +DDI FF
Sbjct: 116 QHHGLLGMGPRLTGMSRQGGIHTPLQKRTGGGIQVGEHTGFLRVRGLPFSATRDDIFKFF 175
Query: 192 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ +++S+ +T +DGR TGEA++ FA A+DSK AM R +GSRY+ELF S+ +E
Sbjct: 176 LGYNPTQESVVLTYRNDGRATGEAYIGFATADDSKRAMELHRRVMGSRYVELFISNKDEH 235
Query: 252 DEALSR 257
AL+R
Sbjct: 236 GRALAR 241
>gi|302852446|ref|XP_002957743.1| hypothetical protein VOLCADRAFT_84201 [Volvox carteri f.
nagariensis]
gi|300256919|gb|EFJ41175.1| hypothetical protein VOLCADRAFT_84201 [Volvox carteri f.
nagariensis]
Length = 241
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 125/206 (60%), Gaps = 9/206 (4%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
FP VRLRGLPFD E D+ F L+ VD++ V ++ +F+GEA VLG V+ AL ++
Sbjct: 34 FPCVRLRGLPFDVMEGDIKMFLE-LETVDIVMVKRDGRFSGEALVVLGSLQLVEAALSKH 92
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
RQ +G+R++E+F S +++YY+A+A VS G + + T L+L
Sbjct: 93 RQFIGQRFIEIFPSSKRDYYRAVAAYVS----GDSYGQQGMGMGRGGMGAGSGGTTWLKL 148
Query: 176 RGLPFSAGKDDIMDFFKDFVLS---EDSIHITMNSD-GRPTGEAFVEFANAEDSKAAMAK 231
RGLPF+A DDI+ FF D L D + M +D GRPTG A V+F +++ A +K
Sbjct: 149 RGLPFAAVPDDIIAFFDDGTLGIPRLDPSRVHMWTDGGRPTGMALVQFNTPQEASIARSK 208
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
D+ +G+RY+E+FP++ ++D+ ++R
Sbjct: 209 DKGLMGTRYVEIFPATRGDLDKFMAR 234
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 136 KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 195
+A NEVSD G +S+ A G + +RLRGLPF + DI F
Sbjct: 3 RARPNEVSD---GLDQQSLAAAGGAGAGAQISDGFPCVRLRGLPFDVMEGDIKMF----- 54
Query: 196 LSEDSIHITM-NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
L +++ I M DGR +GEA V + + +AA++K R +G R+IE+FPSS + A
Sbjct: 55 LELETVDIVMVKRDGRFSGEALVVLGSLQLVEAALSKHRQFIGQRFIEIFPSSKRDYYRA 114
Query: 255 LS 256
++
Sbjct: 115 VA 116
>gi|302794117|ref|XP_002978823.1| hypothetical protein SELMODRAFT_443985 [Selaginella moellendorffii]
gi|300153632|gb|EFJ20270.1| hypothetical protein SELMODRAFT_443985 [Selaginella moellendorffii]
Length = 478
Score = 143 bits (360), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 115/202 (56%), Gaps = 12/202 (5%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF TEVD+ EFF GLD+ V+ V+ + TG+A+ + +L+R
Sbjct: 22 VVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAELANKSLER 81
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----GSPHRSIPRAKSHDEGKDSAVH 169
NRQ++G RY+EVF+ + A+ G G IP + + +
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGAMRMAGRGSSGAYGAAGLQGTGIPGMAGNPDMR----F 137
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
TG++R+RG+P+S DIM FFK ++ D I + ++DGRPTGEAFVEF N E + AM
Sbjct: 138 TGVVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTHADGRPTGEAFVEFINEETAARAM 197
Query: 230 AKDRMTLGSRYIELFPSSHEEM 251
R +GSRY+ELF S+ EM
Sbjct: 198 QLHREPMGSRYVELFKSTKGEM 219
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 26/220 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR+RG+P+ CT D+ FF G+ + D +F+ H + + TGEAF A+Q
Sbjct: 140 VVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTHADGRPTGEAFVEFINEETAARAMQL 199
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEV--SDVRGGSPHRSIPRAKSHDEGKD----SAV 168
+R+ MG RYVE+F+S + E ++ ++ + V SP S+ + G A+
Sbjct: 200 HREPMGSRYVELFKSTKGEMMTSVQQKLWFAGVGNMSPVGSLGQIPGMLGGYGMQGVGAL 259
Query: 169 HTG-----------------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 211
+ G +++RGLP+++G +I +FF+ + + + I++ + + RP
Sbjct: 260 NLGAVQSPGPGAIGDISEDVCIKMRGLPYNSGPREITEFFQGYRIVPNGIYVVIGATDRP 319
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
TGEAFVEF ++++++ AM + R +GSRYIELF ++ EM
Sbjct: 320 TGEAFVEFISSKEAQRAMERHRNNIGSRYIELFRATKSEM 359
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D + ++RLRGLPFSA + DI +FF+ L D I I +N GR TG+A+V+FA AE
Sbjct: 15 DELKRSNVVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAEL 74
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+ ++ ++R +GSRYIE+F +M A+
Sbjct: 75 ANKSLERNRQHIGSRYIEVFKGHPADMQGAM 105
>gi|302805965|ref|XP_002984733.1| hypothetical protein SELMODRAFT_446014 [Selaginella moellendorffii]
gi|300147715|gb|EFJ14378.1| hypothetical protein SELMODRAFT_446014 [Selaginella moellendorffii]
Length = 483
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 115/202 (56%), Gaps = 12/202 (5%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF TEVD+ EFF GLD+ V+ V+ + TG+A+ + +L+R
Sbjct: 22 VVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAELANKSLER 81
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----GSPHRSIPRAKSHDEGKDSAVH 169
NRQ++G RY+EVF+ + A+ G G IP + + +
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGAMRMAGRGSSGAYGAAGLQGTGIPGMAGNPDMR----F 137
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
TG++R+RG+P+S DIM FFK ++ D I + ++DGRPTGEAFVEF N E + AM
Sbjct: 138 TGVVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTHADGRPTGEAFVEFINEETAARAM 197
Query: 230 AKDRMTLGSRYIELFPSSHEEM 251
R +GSRY+ELF S+ EM
Sbjct: 198 QLHREPMGSRYVELFKSTKGEM 219
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 26/220 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR+RG+P+ CT D+ FF G+ + D +F+ H + + TGEAF A+Q
Sbjct: 140 VVRMRGMPYSCTSADIMAFFKGMQVAPDGIFLCTHADGRPTGEAFVEFINEETAARAMQL 199
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEV--SDVRGGSPHRSIPRAKSHDEGKD----SAV 168
+R+ MG RYVE+F+S + E ++ ++ + V SP S+ + G A+
Sbjct: 200 HREPMGSRYVELFKSTKGEMMTSVQQKLWFAGVGNMSPVGSLGQIPGMLGGYGMQGVGAL 259
Query: 169 HTG-----------------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 211
+ G +++RGLP+++G +I +FF+ + + + I++ + + RP
Sbjct: 260 NLGAVQSPGPGAIGDISEDVCIKMRGLPYNSGPREITEFFQGYRIVPNGIYVVIGATDRP 319
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
TGEAFVEF ++++++ AM + R +GSRYIELF ++ EM
Sbjct: 320 TGEAFVEFISSKEAQRAMERHRNNIGSRYIELFRATKSEM 359
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D + ++RLRGLPFSA + DI +FF+ L D I I +N GR TG+A+V+FA AE
Sbjct: 15 DELKRSNVVRLRGLPFSATEVDIKEFFRGLDLGPDGIVICVNFQGRSTGQAYVQFATAEL 74
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+ ++ ++R +GSRYIE+F +M A+
Sbjct: 75 ANKSLERNRQHIGSRYIEVFKGHPADMQGAM 105
>gi|168037998|ref|XP_001771489.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677216|gb|EDQ63689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 527
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 120/213 (56%), Gaps = 17/213 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF TE D+A+FF GL++ V+ V+ + TG+A+ + AL+R
Sbjct: 22 VVRLRGLPFSATESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFASAELANKALER 81
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA----------IANEVSDVRGGSPHRSIPRAKSHDEGK 164
NRQ++G RY+EVF+ + A ++ + GG + IP + + +
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGALRMVGRGSGVVSGSGAVASGGILNTGIPGMSGNPDMR 141
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
+TG++R+RG+P+S DI FFK + D I + ++DGRPTGEAFVEF N E
Sbjct: 142 ----YTGVVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFVNEET 197
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ AM R +GSRY+ELF S+ EM A+ +
Sbjct: 198 AARAMQLHREPMGSRYVELFRSTKGEMMTAVQQ 230
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 123/228 (53%), Gaps = 35/228 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR+RG+P+ CT D+ FF G+ +V D +F+ H + + TGEAF A+Q
Sbjct: 145 VVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFVNEETAARAMQL 204
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS------IP------------- 155
+R+ MG RYVE+FRS + E A+ + + G+ S IP
Sbjct: 205 HREPMGSRYVELFRSTKGEMMTAVQQRMYGMFSGAGGFSQFGVGQIPGMMGAFGVQGLTG 264
Query: 156 --RAKSHDEG----------KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
A G D++ H I ++RGLP++AG+ +IMDFF+ + + IHI
Sbjct: 265 MNLAAVQAAGLGSMTVPQGLSDTSEHVCI-KMRGLPYNAGQREIMDFFEGYSFLPNGIHI 323
Query: 204 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M + RPTGEAFVEF ++++++ AM + R +GSRYIELF ++ EM
Sbjct: 324 VMGATDRPTGEAFVEFMSSDEAQRAMERHRQNIGSRYIELFRATKSEM 371
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D + ++RLRGLPFSA + DI DFFK + D + I +N GR TG+A+V+FA+AE
Sbjct: 15 DELKRSNVVRLRGLPFSATESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFASAEL 74
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+ A+ ++R +GSRYIE+F +M AL
Sbjct: 75 ANKALERNRQHIGSRYIEVFKGHPADMQGAL 105
>gi|125541750|gb|EAY88145.1| hypothetical protein OsI_09580 [Oryza sativa Indica Group]
Length = 226
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 24/166 (14%)
Query: 45 PAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGY 104
P+ G S F VRL GLPFDC+++D+ +FF GLDIVD L HKN FT EAF V
Sbjct: 10 PSAGANSAIQNFSGVRLLGLPFDCSDLDICKFFVGLDIVDCLLDHKNGCFTDEAFVVFPS 69
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK 164
+Q +FAL RNRQNMGRRYVEVFR K+QEYY +IA E R+ P
Sbjct: 70 AMQAEFALHRNRQNMGRRYVEVFRCKKQEYYSSIAAE---------KRTPP--------- 111
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
+L+LRGLP+ +DI+ FF ++ L+E+++H DG+
Sbjct: 112 ------DVLKLRGLPYFTTAEDIIKFFVEYELTEENVHTAYRLDGK 151
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 163 GKDSAVH--TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVEF 219
G +SA+ +G+ RL GLPF DI FF + D + ++ +G T EAFV F
Sbjct: 13 GANSAIQNFSGV-RLLGLPFDCSDLDICKFF----VGLDIVDCLLDHKNGCFTDEAFVVF 67
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
+A ++ A+ ++R +G RY+E+F +E
Sbjct: 68 PSAMQAEFALHRNRQNMGRRYVEVFRCKKQE 98
>gi|168015582|ref|XP_001760329.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688343|gb|EDQ74720.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 550
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 120/213 (56%), Gaps = 17/213 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF +E D+A+FF GL++ V+ V+ + TG+A+ + AL+R
Sbjct: 22 VVRLRGLPFSASESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFATAELANKALER 81
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA----------IANEVSDVRGGSPHRSIPRAKSHDEGK 164
NRQ++G RY+EVF+ + A + + GG + IP + + +
Sbjct: 82 NRQHIGSRYIEVFKGHPADMQGALRMVGRGSGTVTGSGAVATGGILNTGIPGMSGNPDMR 141
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
+TG++R+RG+P+S DI FFK + D I + ++DGRPTGEAFVEFAN E
Sbjct: 142 ----YTGVVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFANEEI 197
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ AM R +GSRY+ELF S+ EM A+ +
Sbjct: 198 AARAMQLHREPMGSRYVELFRSTKGEMMTAVQQ 230
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 124/228 (54%), Gaps = 35/228 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFV--HKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR+RG+P+ CT D+ FF G+ +V D +F+ H + + TGEAF A+Q
Sbjct: 145 VVRMRGMPYSCTSADITAFFKGMQVVADGIFLCTHADGRPTGEAFVEFANEEIAARAMQL 204
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS------IP------------- 155
+R+ MG RYVE+FRS + E A+ + + G+ S IP
Sbjct: 205 HREPMGSRYVELFRSTKGEMMTAVQQRMYGMFSGAGGFSQFGVGQIPGMMGAFGVQGLTG 264
Query: 156 --RAKSHDEG----------KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
A G D++ H I ++RGLP++AG+ +IMDFF+ + + + IHI
Sbjct: 265 MNLAAVQAAGLGSMTGLQGLSDTSEHVCI-KMRGLPYNAGQREIMDFFEGYNILPNGIHI 323
Query: 204 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M + RPTGEAFVEF ++++++ AM + R +GSRYIELF ++ EM
Sbjct: 324 VMGATDRPTGEAFVEFISSDEAQRAMERHRQNIGSRYIELFRATKSEM 371
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D + ++RLRGLPFSA + DI DFFK + D + I +N GR TG+A+V+FA AE
Sbjct: 15 DELKRSNVVRLRGLPFSASESDIADFFKGLEMGPDGVVICVNFQGRSTGQAYVQFATAEL 74
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+ A+ ++R +GSRYIE+F +M AL
Sbjct: 75 ANKALERNRQHIGSRYIEVFKGHPADMQGAL 105
>gi|334188661|ref|NP_001190629.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332010758|gb|AED98141.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 158
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS----DVRGGSPHRSIPRAKSHD 161
+QV+ ALQR+R NMGRRYVEVFR +Q+YY A+A E +VR P RAK
Sbjct: 1 MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVRASPPPTGPSRAKRFS 60
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
E K+ +T +L++RGLP+S K I++FF + + + + + DG+ TGEAFVEF
Sbjct: 61 E-KEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFET 119
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSS 247
E+++ AMAKD+M++GSRY+ELFP++
Sbjct: 120 GEEARRAMAKDKMSIGSRYVELFPTT 145
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+++RGLP+ + + EFF G ++ + + K TGEAF + A+ +
Sbjct: 70 VLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAK 129
Query: 115 NRQNMGRRYVEVF 127
++ ++G RYVE+F
Sbjct: 130 DKMSIGSRYVELF 142
>gi|298710505|emb|CBJ25569.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 670
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 118/195 (60%), Gaps = 23/195 (11%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V LRGLP++ + ++ +FF +D+ D + VH + GEA+ L ++ AL+++R
Sbjct: 48 VHLRGLPWNASTKELVDFFAPMDVEDGDIHLVHNSR---GEAYVKLKNESDLETALKKDR 104
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+GRRY+EVFRS ++ A+ ++VS +K H +G + G++R+R
Sbjct: 105 NTIGRRYIEVFRSSIEDVEHAL-DDVS-------------SKGHGDGG----YKGVVRMR 146
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLP+SA + DI +FF + +D IH+T+N DGRP+GEA+V F E +K A+ +D+ +
Sbjct: 147 GLPWSANEGDIRNFFDGIAIEKDGIHVTLNRDGRPSGEAYVVFETEEAAKEALKRDKDKI 206
Query: 237 GSRYIELFPSSHEEM 251
G R+I++F ++ E+
Sbjct: 207 GERWIDIFEATKGEV 221
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 105/193 (54%), Gaps = 13/193 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR+RGLP+ E D+ FF G+ I D + V +++ + +GEA+ V AL+R
Sbjct: 142 VVRMRGLPWSANEGDIRNFFDGIAIEKDGIHVTLNRDGRPSGEAYVVFETEEAAKEALKR 201
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +G R++++F + + E Y + S D DSA +TG++R
Sbjct: 202 DKDKIGERWIDIFEATKGEVYSMTGG--------GGKKGDQGGVSFDT-TDSA-YTGVVR 251
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+RGLPF A K I FF + E +I I DG+ +GEAFV F+ +++ A+ KD+
Sbjct: 252 MRGLPFEATKSQIRAFFDGINVKESNIFIVTRPDGKASGEAFVLFSTEAEAEKALLKDKE 311
Query: 235 TLGSRYIELFPSS 247
LG R+I+LF ++
Sbjct: 312 KLGDRWIDLFATN 324
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 112/204 (54%), Gaps = 21/204 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI--VDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQR 114
VVR+RGLPF+ T+ + FF G+++ ++ V + + K +GEAF + + + AL +
Sbjct: 249 VVRMRGLPFEATKSQIRAFFDGINVKESNIFIVTRPDGKASGEAFVLFSTEAEAEKALLK 308
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+++ +G R++++F + + Y+ + V K A G+LR
Sbjct: 309 DKEKLGDRWIDLFATNKGALYQRVGVGVKMA-----------------AKPDAEFRGVLR 351
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-AKDR 233
+RGLPF++G ++I FF+ + + E + + D RPTGE++V F + ++++ A A D+
Sbjct: 352 MRGLPFASGVEEIRTFFRGYKVQEHGVFVVNGGDWRPTGESYVLFDSEDEAERAFKALDK 411
Query: 234 MTLGSRYIELFPSSHEEMDEALSR 257
+G R+IELF S+ ++ A R
Sbjct: 412 QKIGDRWIELFRSTKGDLYTATVR 435
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 22/200 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKF--TGEAFCVLGYPLQVDFALQR 114
V+R+RGLPF ++ FF G + + +FV + TGE++ + + + A +
Sbjct: 349 VLRMRGLPFASGVEEIRTFFRGYKVQEHGVFVVNGGDWRPTGESYVLFDSEDEAERAFKA 408
Query: 115 -NRQNMGRRYVEVFRSKRQEYYKAIANE--VSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++Q +G R++E+FRS + + Y A + RGG+ + P
Sbjct: 409 LDKQKIGDRWIELFRSTKGDLYTATVRSTVLGMERGGAMYGREPMT-------------- 454
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++LRGLPF+ +++I FF+ + I + RPTGE FVEFA +D + AM++
Sbjct: 455 CVKLRGLPFNVTENNIFSFFEGLTVI--GSFICKDVMARPTGEGFVEFATVDDCQLAMSR 512
Query: 232 DRMTLGSRYIELFPSSHEEM 251
+R ++ RY+E+F +S E++
Sbjct: 513 NRESMMDRYVEVFATSKEDV 532
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 145 VRGGS---PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 201
VRGG+ R R K G +T + LRGLP++A +++DFF + + I
Sbjct: 17 VRGGNEVDTERGSKRQKGGGNGAGKGEYTHAVHLRGLPWNASTKELVDFFAPMDVEDGDI 76
Query: 202 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
H+ NS GEA+V+ N D + A+ KDR T+G RYIE+F SS E+++ AL
Sbjct: 77 HLVHNS----RGEAYVKLKNESDLETALKKDRNTIGRRYIEVFRSSIEDVEHAL 126
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN--NKFTGEAFCVLGYPLQVDFAL 112
P V+LRGLPF+ TE ++ FF GL ++ F+ K+ + TGE F A+
Sbjct: 452 PMTCVKLRGLPFNVTENNIFSFFEGLTVIGS-FICKDVMARPTGEGFVEFATVDDCQLAM 510
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIA 139
RNR++M RYVEVF + +++ + I
Sbjct: 511 SRNRESMMDRYVEVFATSKEDVLQQIG 537
>gi|213513203|ref|NP_001135339.1| G-rich sequence factor 1 [Salmo salar]
gi|209734348|gb|ACI68043.1| G-rich sequence factor 1 [Salmo salar]
Length = 400
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR+RGLP+ CTE DV FF GLD+ + L + +GEA+ Q D AL R
Sbjct: 199 VVRIRGLPYSCTETDVMLFFSGLDVAEDGVTLVTDYRGRNSGEAYVQFLTQEQADEALTR 258
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANE-VSDVRGG---SPHRSIPRAKSHDEGKDSAVHT 170
+RQ +G RY+EVF S+R E E V + R PHR + H S++
Sbjct: 259 DRQVIGNRYIEVFPSRRSEIGGRKKTESVEEGRNSIQSQPHRPAAQPSRHGSHPVSSLPQ 318
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+ +RGLPF A DDI+ FF LS I + DGR +GEA V F + +D+ +AM
Sbjct: 319 HFVHMRGLPFQATGDDIVQFFSPLALSR--ILVEFGPDGRASGEADVYFTSHQDAVSAMT 376
Query: 231 KDRMTLGSRYIELFPSS 247
+D+ + RYIELF +S
Sbjct: 377 RDKAHMQERYIELFLNS 393
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 36/230 (15%)
Query: 44 PPAYGYVSQPPPFP----VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKF 94
PP Y S P P ++R +GLP+ CT D+ +FF + D L V+++ K
Sbjct: 84 PPLPDYNSDPGPEKKEVFIIRAKGLPWSCTTEDLLQFFSECRVRDGVKGIHLTVNRDGKP 143
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
G+AF L + V AL+++RQ +G RY+EVF EV++ S +I
Sbjct: 144 NGQAFIELEHEDDVGKALEKHRQYLGPRYIEVF-------------EVTN----SDAETI 186
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
+ +D G++R+RGLP+S + D+M FF ++ED + + + GR +GE
Sbjct: 187 LKKSVQLPARD-----GVVRIRGLPYSCTETDVMLFFSGLDVAEDGVTLVTDYRGRNSGE 241
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM-----DEALSRGR 259
A+V+F E + A+ +DR +G+RYIE+FPS E+ E++ GR
Sbjct: 242 AYVQFLTQEQADEALTRDRQVIGNRYIEVFPSRRSEIGGRKKTESVEEGR 291
>gi|348513989|ref|XP_003444523.1| PREDICTED: G-rich sequence factor 1-like [Oreochromis niloticus]
Length = 400
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 109/209 (52%), Gaps = 16/209 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VV LRGLPF CTE D+ FF GL+I + + + +G A+ D ALQR
Sbjct: 192 VVLLRGLPFTCTEDDIVHFFSGLEITENGITMVTDSRGRKSGVAYVQFTSQEAADEALQR 251
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG----------- 163
+R+ +G RY+EVF S+R E + S S +S+ R + +
Sbjct: 252 DREIIGNRYIEVFPSRRDEIHSTWGRRTSPFSSQSRPQSVDRRSAPENRSPASPPPSLHL 311
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ S V + +RGLPF A +DI+ FF +S+ I I DGRP+GEA V F
Sbjct: 312 QSSTVPLHYIHVRGLPFQASGEDIVKFFYPLAVSK--ILIECGPDGRPSGEADVYFHCHR 369
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMD 252
D+ AAM+KDRM +G RYIELF +S + D
Sbjct: 370 DAVAAMSKDRMNIGERYIELFLNSVPDCD 398
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 29/224 (12%)
Query: 41 YNPPPAYGYVSQPPPFPV--VRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNK 93
Y P PAY ++P V V+++GLP+ CT D+ +FF I D L + + +
Sbjct: 76 YPPLPAYHPETEPETKEVYIVQVKGLPWSCTTQDLLQFFSECRIRDGVKGIHLTLDRLGR 135
Query: 94 FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 153
+G AF + + V AL+++RQ +G RYVEV+ +V G +
Sbjct: 136 PSGRAFIEMEHEEDVSKALEKHRQYLGPRYVEVY----------------EVTNGDAE-A 178
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
I + + G D G++ LRGLPF+ +DDI+ FF ++E+ I + +S GR +G
Sbjct: 179 ILKKATQPLGAD-----GVVLLRGLPFTCTEDDIVHFFSGLEITENGITMVTDSRGRKSG 233
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+V+F + E + A+ +DR +G+RYIE+FPS +E+ R
Sbjct: 234 VAYVQFTSQEAADEALQRDREIIGNRYIEVFPSRRDEIHSTWGR 277
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 42 NPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFC 100
+PPP+ S P + +RGLPF + D+ +FF+ L + +L + + +GEA
Sbjct: 304 SPPPSLHLQSSTVPLHYIHVRGLPFQASGEDIVKFFYPLAVSKILIECGPDGRPSGEADV 363
Query: 101 VLGYPLQVDFALQRNRQNMGRRYVEVF 127
A+ ++R N+G RY+E+F
Sbjct: 364 YFHCHRDAVAAMSKDRMNIGERYIELF 390
>gi|361069401|gb|AEW09012.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172127|gb|AFG69420.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172129|gb|AFG69421.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172131|gb|AFG69422.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172133|gb|AFG69423.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172135|gb|AFG69424.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172137|gb|AFG69425.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172139|gb|AFG69426.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172141|gb|AFG69427.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172143|gb|AFG69428.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172145|gb|AFG69429.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172147|gb|AFG69430.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172149|gb|AFG69431.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172151|gb|AFG69432.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172153|gb|AFG69433.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172155|gb|AFG69434.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172157|gb|AFG69435.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172159|gb|AFG69436.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
gi|383172161|gb|AFG69437.1| Pinus taeda anonymous locus CL3158Contig1_03 genomic sequence
Length = 109
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 80/112 (71%), Gaps = 6/112 (5%)
Query: 99 FCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG---SPHRSIP 155
F V G P+QVDFALQR+RQNMGRRY+EVFR K+Q+YY AIA EV++ +G +P S
Sbjct: 1 FVVFGAPMQVDFALQRDRQNMGRRYIEVFRCKKQDYYNAIAAEVNEPKGADDPAPPSSFS 60
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207
+ S KD HTGIL+LRGLPFS K DI+DFF D+ LSE ++HI +S
Sbjct: 61 KGSS---DKDHMEHTGILKLRGLPFSVSKRDIIDFFVDYDLSETNVHIVTHS 109
>gi|198421641|ref|XP_002120551.1| PREDICTED: similar to RNA-binding protein 35B (RNA-binding motif
protein 35B) [Ciona intestinalis]
Length = 772
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV---DVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D AL R
Sbjct: 254 VVRARGLPWQASDHDVARFFKGLNIPRGGAALVLNPQGRRNGEALVRFENEQQRDLALLR 313
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +M RY+EV+R+ E+ K V GS +I E I+R
Sbjct: 314 HKHHMASRYIEVYRASGDEFLK--------VAAGSSCEAIHFLSKEGEA--------IVR 357
Query: 175 LRGLPFSAGKDDIMDFFKDFV---LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+AG DI++FF D + E+ + + +DGRPTG+AFV F + + + AA+ K
Sbjct: 358 MRGLPFTAGPRDIVEFFGDEIPVAHGEEGVLLVKFADGRPTGDAFVLFTSEKFAVAALNK 417
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
++TLG RY+E+F S+ E+ + LSR
Sbjct: 418 HKLTLGKRYVEIFKSTAAEVQQVLSR 443
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 23/219 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDF 110
+VR+RGLPF D+ EFF HG + V +L + + TG+AF +
Sbjct: 355 IVRMRGLPFTAGPRDIVEFFGDEIPVAHGEEGV-LLVKFADGRPTGDAFVLFTSEKFAVA 413
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD---VRGGSPHRSIPRAKSHDEGKDSA 167
AL +++ +G+RYVE+F+S E + ++ ++ SPH P + G A
Sbjct: 414 ALNKHKLTLGKRYVEIFKSTAAEVQQVLSRHMTSPIIPTMPSPHILPPPQQPVPAG---A 470
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAED- 224
+ I RLRG+P+SA +DI F + S IH+ +N GRP+G+AF++ ++ E
Sbjct: 471 IRNCI-RLRGMPYSATVEDITSFLGELANSILPHGIHMVLNQQGRPSGDAFIQLSSVEKC 529
Query: 225 SKAAM-----AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
S+AA+ + +G RY+E+F S +EM+ L G
Sbjct: 530 SQAALDVSKGGCHKRHMGERYVEVFQCSGDEMNMVLMGG 568
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAK 231
+R++G+P++AG DIM FFK + L+ +SI + N RPTGEA V F + E+S +A +
Sbjct: 698 VRMQGMPYNAGVADIMAFFKGYNLNSESIKLIYNDKLRPTGEALVTFPSLEESHRAVVEN 757
Query: 232 DRMTLGSRYIELF 244
+R +G+RYIEL
Sbjct: 758 NRKLMGNRYIELL 770
>gi|188528963|ref|NP_001120907.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Xenopus
(Silurana) tropicalis]
gi|183986477|gb|AAI66302.1| hnrnph3 protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 109/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVH----KNNKFTGEAFCVLGYPLQVDFAL 112
+VR+RGLP+ CT+ +V EFF I++ V +H K + +GEAF +L + AL
Sbjct: 6 IVRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKAL 65
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RY+EVF+S E + K + G G
Sbjct: 66 EKDRKYMGHRYIEVFKSNNTEMEWVL-------------------KHNSTGDVDTASDGT 106
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I +T++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 107 VRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQGRSTGEAFVQFASKEIAENALGKH 166
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 167 KERIGHRYIEIFKSSRSEI 185
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I+R+RGLP+S K+++++FF + + E IH T + +GRP+GEAF+ ED K A+
Sbjct: 6 IVRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKAL 65
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR +G RYIE+F S++ EM+ L
Sbjct: 66 EKDRKYMGHRYIEVFKSNNTEMEWVL 91
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 5/94 (5%)
Query: 157 AKSHDEGKD--SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
A+++ G D + H+G + +RGLPF A + DI +FF L+ +HI + +DGR TG
Sbjct: 265 AQAYGGGADGTTGFHSGHFVHMRGLPFRATESDIANFFSP--LTPIRVHIDVGADGRATG 322
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
EA VEFA ED+ AAM+KD+ + RYIELF +S
Sbjct: 323 EADVEFATHEDAVAAMSKDKNNMQHRYIELFLNS 356
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L + V + V + + TGEA A+ +++
Sbjct: 284 VHMRGLPFRATESDIANFFSPLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMSKDKN 343
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 344 NMQHRYIELF 353
>gi|197246805|gb|AAI68807.1| hnrnph3 protein [Xenopus (Silurana) tropicalis]
Length = 413
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 109/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVH----KNNKFTGEAFCVLGYPLQVDFAL 112
+VR+RGLP+ CT+ +V EFF I++ V +H K + +GEAF +L + AL
Sbjct: 6 IVRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKAL 65
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RY+EVF+S E + K + G G
Sbjct: 66 EKDRKYMGHRYIEVFKSNNTEMEWVL-------------------KHNSTGDVDTASDGT 106
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I +T++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 107 VRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQGRSTGEAFVQFASKEIAENALGKH 166
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 167 KERIGHRYIEIFKSSRSEI 185
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I+R+RGLP+S K+++++FF + + E IH T + +GRP+GEAF+ ED K A+
Sbjct: 6 IVRVRGLPWSCTKEEVLEFFSECSIIEGVSGIHFTTSKEGRPSGEAFIILDTEEDLKKAL 65
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR +G RYIE+F S++ EM+ L
Sbjct: 66 EKDRKYMGHRYIEVFKSNNTEMEWVL 91
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 5/94 (5%)
Query: 157 AKSHDEGKD--SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
A+++ G D + H+G + +RGLPF A + DI +FF L+ +HI + +DGR TG
Sbjct: 265 AQAYGGGADGTTGFHSGHFVHMRGLPFRATESDIANFFSP--LTPIRVHIDVGADGRATG 322
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
EA VEFA ED+ AAM+KD+ + RYIELF +S
Sbjct: 323 EADVEFATHEDAVAAMSKDKNNMQHRYIELFLNS 356
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L + V + V + + TGEA A+ +++
Sbjct: 284 VHMRGLPFRATESDIANFFSPLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMSKDKN 343
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 344 NMQHRYIELF 353
>gi|196010820|ref|XP_002115274.1| hypothetical protein TRIADDRAFT_29141 [Trichoplax adhaerens]
gi|190582045|gb|EDV22119.1| hypothetical protein TRIADDRAFT_29141 [Trichoplax adhaerens]
Length = 339
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 115/199 (57%), Gaps = 25/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ T DV +FF G + + + F + ++ + +GEA+ G + AL
Sbjct: 8 VVRIRGLPWSATVEDVQKFFTGCRVKEGRQGIHFTYASDGRASGEAYIEFGSLEDFNRAL 67
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+RNR +MG+RYVEVF+SKR E + + RS G+DS +
Sbjct: 68 ERNRCHMGKRYVEVFKSKRSEMDYVVKR--------TKQRS---------GRDSE---NV 107
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLP+ K++I FF + + + I ++ DGR TGEA+VEFAN + S+ A++KD
Sbjct: 108 VRLRGLPYECSKEEIAQFFTGYEIIPNGITFGVDRDGRSTGEAYVEFANTDVSERALSKD 167
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ T+G RYIE+F + ++
Sbjct: 168 KETIGHRYIEIFRAKKSDI 186
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 45/236 (19%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV--DVLF-VHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLP++C++ ++A+FF G +I+ + F V ++ + TGEA+ + AL +
Sbjct: 107 VVRLRGLPYECSKEEIAQFFTGYEIIPNGITFGVDRDGRSTGEAYVEFANTDVSERALSK 166
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG--------------------GSPHRSI 154
+++ +G RY+E+FR+K+ + + A ++ + G G P
Sbjct: 167 DKETIGHRYIEIFRAKKSDIHNMSAPKIRPLIGSAASSRPRPYDRKRGDRFTRGHPEDRY 226
Query: 155 PRAKSHDEGK------------------DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 196
+ + ++ G + VH+ +R+RGLPF +++I+DFF L
Sbjct: 227 NQGRGYNRGYLDNRPSDHPVEPDRPPDFEPNVHS--IRMRGLPFKVTENEIVDFFDQIPL 284
Query: 197 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 252
+IHI G+ TGEA VEF N ED+ AM KDR + RYIELF ++ E +
Sbjct: 285 Q--NIHIEYGDGGKATGEAVVEFYNYEDALEAMNKDRRRIKHRYIELFLNTTPESE 338
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+SA +D+ FF + E IH T SDGR +GEA++EF + ED A+
Sbjct: 8 VVRIRGLPWSATVEDVQKFFTGCRVKEGRQGIHFTYASDGRASGEAYIEFGSLEDFNRAL 67
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
++R +G RY+E+F S EMD + R +
Sbjct: 68 ERNRCHMGKRYVEVFKSKRSEMDYVVKRTK 97
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 52 QPPPFP----VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPL 106
+PP F +R+RGLPF TE ++ +FF + + ++ + + K TGEA
Sbjct: 250 RPPDFEPNVHSIRMRGLPFKVTENEIVDFFDQIPLQNIHIEYGDGGKATGEAVVEFYNYE 309
Query: 107 QVDFALQRNRQNMGRRYVEVF 127
A+ ++R+ + RY+E+F
Sbjct: 310 DALEAMNKDRRRIKHRYIELF 330
>gi|432960846|ref|XP_004086494.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 370
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 110/203 (54%), Gaps = 8/203 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VV LRGLPF CT+ D+ FF GLD+V+ + + +GEAF ALQ+
Sbjct: 170 VVMLRGLPFSCTQDDILLFFSGLDVVENGITMVTDGRGRNSGEAFVQFTSQEVAGKALQK 229
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVS-DVRGGSPHRSIPRAKSHD--EGKDSAVHTG 171
+R+ MG RYVEVF S+ E S + SP P + H + S ++
Sbjct: 230 HRELMGHRYVEVFPSRSSEIRSTWKRRSSLPPQSASPPAGRPASAPHRAVSPQSSEANSH 289
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLPF A +DI+ FF +V+S+ I I DGR +GEA V F+ D+ AAM++
Sbjct: 290 FIHMRGLPFQASGEDIVKFFSPYVVSK--IMIECRPDGRTSGEADVYFSCHRDAVAAMSR 347
Query: 232 DRMTLGSRYIELFPSSHEEMDEA 254
DR +G RYIELF +S + D+
Sbjct: 348 DRTNMGHRYIELFLNSAPDSDQC 370
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 109/222 (49%), Gaps = 28/222 (12%)
Query: 41 YNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFT 95
Y P PAY F +V++RGLP+ CT ++ FF I D L + + + +
Sbjct: 57 YPPLPAYDQQESREVF-IVQVRGLPWSCTVHELLHFFSDCRIRDGERGVHLTLDRLGRPS 115
Query: 96 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP 155
G AF + + V AL+++RQ +G RYVEV + N SD H + P
Sbjct: 116 GRAFIEMEHEEDVSKALEKHRQYLGPRYVEV---------SEVTN--SDAETILQHVAPP 164
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
A G++ LRGLPFS +DDI+ FF + E+ I + + GR +GEA
Sbjct: 165 -----------AAEDGVVMLRGLPFSCTQDDILLFFSGLDVVENGITMVTDGRGRNSGEA 213
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
FV+F + E + A+ K R +G RY+E+FPS E+ R
Sbjct: 214 FVQFTSQEVAGKALQKHRELMGHRYVEVFPSRSSEIRSTWKR 255
>gi|302828822|ref|XP_002945978.1| splicing factor like protein [Volvox carteri f. nagariensis]
gi|300268793|gb|EFJ52973.1| splicing factor like protein [Volvox carteri f. nagariensis]
Length = 578
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 30/215 (13%)
Query: 52 QPPPFP---VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
QPPP P V+RLRGLPF E DV FF G ++ V+ + + TGE + L
Sbjct: 28 QPPPQPKSSVLRLRGLPFSAGEEDVRHFFSGFNVAQVVIGKRAGRSTGEGYVQLDSTSAA 87
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
A+ + +RQ +G RY+EVF S + A + V +RG
Sbjct: 88 AEAIMKLHRQTLGHRYIEVFESTEADLATAKSLSVDRMRGF------------------- 128
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
++R RGLP++A D+++FF V + + T DGRPTGEAFVEF +
Sbjct: 129 ----VVRCRGLPYTATAQDVLNFFGSDAPVVRGIEGVVFTYAPDGRPTGEAFVEFQTEDA 184
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ A+ K + ++G+RYIELF S+ +M +A+ + R
Sbjct: 185 QREALKKHKESMGARYIELFVSTKVDMIQAIQQNR 219
>gi|16876910|gb|AAH16736.1| HNRPF protein [Homo sapiens]
Length = 415
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF LG V AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVFRS R E + + S DSA + G
Sbjct: 72 KKDRESMGHRYIEVFRSHRTEMDWVLKH------------------SGPNSADSA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFRSHRTEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|327274272|ref|XP_003221902.1| PREDICTED: g-rich sequence factor 1-like [Anolis carolinensis]
Length = 485
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 116/229 (50%), Gaps = 45/229 (19%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ CTEVD+++FF GL I+D+ FV + + TGEAF P + AL ++
Sbjct: 254 VVRLRGLPYSCTEVDISDFFSGLSIIDITFVMDQRGRRKTGEAFVQFATPEMANQALLKH 313
Query: 116 RQNMGRRYVEVFRSKRQEYYK---------------------AIANEVSDVRGGSPHRSI 154
++ +G RY+E+F S+R E ++ NE P +
Sbjct: 314 KEEIGNRYIEIFPSQRSEIRTHNGFFRGKKMMGFPTTKQDSDSVFNEGDFNEALRPVAAY 373
Query: 155 PRAKSHDEGKDS--------------AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS 200
AK H+ K + ++H + LRGLPF A DI++FF
Sbjct: 374 ENAKEHELFKQAFERPRDLQESRSFPSLH--FVHLRGLPFQATAQDIINFFAPL----KP 427
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM NS G+ TGEA V F ED+ AAMAK+R + RYIELF +S
Sbjct: 428 VRITMEYNSSGKATGEADVHFETHEDAIAAMAKNRSHVQHRYIELFLNS 476
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 114/224 (50%), Gaps = 30/224 (13%)
Query: 34 PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVL-----FV 88
PP S Y P PA + + ++R +GLP+ CTE DV FF G I + + +
Sbjct: 133 PPLSE--YEPHPAKSGEEEEDVY-LIRAQGLPYSCTEEDVLNFFAGSKIRNGVNGIHFLL 189
Query: 89 HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 148
+++ K G+A L V AL+++R+ +G+RYVEVF I NE D
Sbjct: 190 NRDGKRRGDALVELESEQDVHNALEKHRRYLGQRYVEVFE---------IHNEDVDAI-- 238
Query: 149 SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 208
KS S + G++RLRGLP+S + DI DFF LS I M+
Sbjct: 239 --------MKSLQSSSTSVTNDGVVRLRGLPYSCTEVDISDFFSG--LSIIDITFVMDQR 288
Query: 209 GR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
GR TGEAFV+FA E + A+ K + +G+RYIE+FPS E+
Sbjct: 289 GRRKTGEAFVQFATPEMANQALLKHKEEIGNRYIEIFPSQRSEI 332
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Query: 157 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGE 214
AKS +E +D ++R +GLP+S ++D+++FF + + IH +N DG+ G+
Sbjct: 143 AKSGEEEED----VYLIRAQGLPYSCTEEDVLNFFAGSKIRNGVNGIHFLLNRDGKRRGD 198
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
A VE + +D A+ K R LG RY+E+F +E++D +
Sbjct: 199 ALVELESEQDVHNALEKHRRYLGQRYVEVFEIHNEDVDAIM 239
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V LRGLPF T D+ FF L V + + ++ K TGEA A+
Sbjct: 399 PSLHFVHLRGLPFQATAQDIINFFAPLKPVRITMEYNSSGKATGEADVHFETHEDAIAAM 458
Query: 113 QRNRQNMGRRYVEVF 127
+NR ++ RY+E+F
Sbjct: 459 AKNRSHVQHRYIELF 473
>gi|452823782|gb|EME30790.1| RNA-binding protein [Galdieria sulphuraria]
Length = 739
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 117/229 (51%), Gaps = 9/229 (3%)
Query: 36 SSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV--DVLFV-HKNN 92
SSS + + A + P ++RLRGLP+ T+ DV F G ++ V FV ++
Sbjct: 234 SSSLLGSAIEASPVAAGVPTGSIIRLRGLPWSATKEDVLNFLEGAQVIPCAVHFVLNQQG 293
Query: 93 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 152
K GEAF L V+ AL+ +RQ +G RY+EVF+S QE ++ + +P
Sbjct: 294 KPRGEAFVQLLSVDDVNRALELHRQVLGHRYIEVFKSTPQEMSTVLSRQNGRSTSLAPFS 353
Query: 153 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL----SEDSIHITMNSD 208
S+ D + I+R+RGLPFSA D + FF + S IHI N D
Sbjct: 354 RT--TYSNVSSIDDSKPFFIIRMRGLPFSASADQVARFFDGIEIAGCRSNGGIHIVQNQD 411
Query: 209 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
G P GEAFVEFA+ + A+ + + +G RYIELF SS EM + R
Sbjct: 412 GHPIGEAFVEFASEDALNKALQRHKQMMGKRYIELFRSSLMEMLNTIER 460
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 28/221 (12%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-------LFVHKNNKFTGEAFCVLGYPLQ 107
PF ++R+RGLPF + VA FF G++I + +++ GEAF
Sbjct: 368 PFFIIRMRGLPFSASADQVARFFDGIEIAGCRSNGGIHIVQNQDGHPIGEAFVEFASEDA 427
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYK------------AIANEVSDVRGGSPHRSIP 155
++ ALQR++Q MG+RY+E+FRS E AI V + G+ RS+
Sbjct: 428 LNKALQRHKQMMGKRYIELFRSSLMEMLNTIERHGGPVARAAIEATVCENSVGTSSRSVL 487
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
+ A LR+RGLPF DI FF ++ + I+ N RP GEA
Sbjct: 488 NSD--------ASTCSFLRIRGLPFDTTVSDITTFFAEYRIVPGGIYFVNNGLDRPKGEA 539
Query: 216 FVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEAL 255
FV+F++ ++ A+ K D++ +GSRY+ELF +S E+ L
Sbjct: 540 FVQFSSVDERNDALKKKDKLYMGSRYVELFEASEAEVSALL 580
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 38/235 (16%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIV--DVLFVHKN-NKFTGEAFCVLGYPLQVDFALQR- 114
+R+RGLPFD T D+ FF IV + FV+ ++ GEAF + + AL++
Sbjct: 497 LRIRGLPFDTTVSDITTFFAEYRIVPGGIYFVNNGLDRPKGEAFVQFSSVDERNDALKKK 556
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAI-ANEVSDVRGGSPHR----------SIPRAKSHD-- 161
++ MG RYVE+F + E + +N S + + S P KS++
Sbjct: 557 DKLYMGSRYVELFEASEAEVSALLGSNLCSTITSAASSIANSSSAKSTFSNPNTKSNELL 616
Query: 162 ------EGKDSA-----------VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
G D++ + +R+RGLPF A DI FF DF ++E + +
Sbjct: 617 TWESVGRGWDASSWKSNIPKSHIIPNRTVRMRGLPFRATISDIQFFFSDFHITESDVVLG 676
Query: 205 MNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ GRP+GEA+V F E+++ A+++ +G RYIELF + D+++S G
Sbjct: 677 FDKMGRPSGEAWVTFGTEEEARNAVSQLQHAHIGKRYIELFLCTQ---DKSVSLG 728
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 36 SSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNN 92
+SS+ N P S P VR+RGLPF T D+ FF I + VL K
Sbjct: 627 ASSWKSNIPK-----SHIIPNRTVRMRGLPFRATISDIQFFFSDFHITESDVVLGFDKMG 681
Query: 93 KFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVF 127
+ +GEA+ G + A+ Q ++G+RY+E+F
Sbjct: 682 RPSGEAWVTFGTEEEARNAVSQLQHAHIGKRYIELF 717
>gi|296220055|ref|XP_002756146.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Callithrix jacchus]
gi|403276785|ref|XP_003930066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Saimiri boliviensis boliviensis]
gi|403276787|ref|XP_003930067.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Saimiri boliviensis boliviensis]
Length = 415
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF LG V AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S DSA + G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|402880032|ref|XP_003903619.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Papio anubis]
gi|402880034|ref|XP_003903620.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Papio anubis]
gi|402880036|ref|XP_003903621.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Papio anubis]
gi|402880038|ref|XP_003903622.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Papio anubis]
gi|402880040|ref|XP_003903623.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Papio anubis]
gi|402880042|ref|XP_003903624.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6
[Papio anubis]
gi|402880044|ref|XP_003903625.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Papio anubis]
gi|402880046|ref|XP_003903626.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8
[Papio anubis]
gi|402880048|ref|XP_003903627.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 9
[Papio anubis]
gi|402880050|ref|XP_003903628.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Papio anubis]
gi|402880052|ref|XP_003903629.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Papio anubis]
gi|402880054|ref|XP_003903630.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Papio anubis]
gi|402880056|ref|XP_003903631.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Papio anubis]
gi|402880058|ref|XP_003903632.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 14
[Papio anubis]
Length = 415
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF LG V AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S DSA + G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|62510677|sp|Q60HC3.3|HNRPF_MACFA RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|52782291|dbj|BAD51992.1| heterogeneous nuclear ribonucleoprotein F [Macaca fascicularis]
Length = 415
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF LG V AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S DSA + G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|126328002|ref|XP_001371131.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 466
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 111/198 (56%), Gaps = 24/198 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ D+ +FF I++ + FV+ + K +GEAF L ++ AL
Sbjct: 12 VVKVRGLPWSCSASDIQQFFSECKILNEEAGIHFVYTREGKLSGEAFVELKSEDEITLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVFRS E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFRSSNIEMDWVLKHTAPN--------------SLDTASD-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR +GEAFV+FA+ E ++ A+ K+
Sbjct: 113 VRLRGLPFRCNKEEIVQFFSGLEIMPNGITLPVDFQGRNSGEAFVQFASQEIAEKALKKN 172
Query: 233 RMTLGSRYIELFPSSHEE 250
+ T+G RYIE+F SS E
Sbjct: 173 KETIGHRYIEIFKSSQAE 190
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDF-VLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S DI FF + +L+E++ IH +G+ +GEAFVE + ++ A+
Sbjct: 12 VVKVRGLPWSCSASDIQQFFSECKILNEEAGIHFVYTREGKLSGEAFVELKSEDEITLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F SS+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFRSSNIEMDWVL 97
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLP+ A ++DI DFF L +I + DGR TGEA VEFA ED+ AAM+KD
Sbjct: 284 VHMRGLPYKATENDICDFFSP--LKPVGAYIEIGPDGRVTGEADVEFATHEDAVAAMSKD 341
Query: 233 RMTLGSRYIELFPSSHEEMD 252
+ + RYIELF +S E D
Sbjct: 342 KANMQHRYIELFLNSTIEAD 361
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 46 AYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGY 104
++ +Q P V +RGLP+ TE D+ +FF L V + + + TGEA
Sbjct: 271 SWSTFNQSPAGHYVHMRGLPYKATENDICDFFSPLKPVGAYIEIGPDGRVTGEADVEFAT 330
Query: 105 PLQVDFALQRNRQNMGRRYVEVF 127
A+ +++ NM RY+E+F
Sbjct: 331 HEDAVAAMSKDKANMQHRYIELF 353
>gi|4826760|ref|NP_004957.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470397|ref|NP_001091678.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470400|ref|NP_001091677.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470402|ref|NP_001091675.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470404|ref|NP_001091674.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|148470406|ref|NP_001091676.1| heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|350537293|ref|NP_001233466.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|386781898|ref|NP_001247944.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|297686319|ref|XP_002820702.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Pongo abelii]
gi|297686321|ref|XP_002820703.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Pongo abelii]
gi|297686325|ref|XP_002820705.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Pongo abelii]
gi|297686327|ref|XP_002820706.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Pongo abelii]
gi|297686329|ref|XP_002820707.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6
[Pongo abelii]
gi|297686331|ref|XP_002820708.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Pongo abelii]
gi|297686333|ref|XP_002820709.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8
[Pongo abelii]
gi|297686337|ref|XP_002820711.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Pongo abelii]
gi|297686339|ref|XP_002820712.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Pongo abelii]
gi|297686341|ref|XP_002820713.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Pongo abelii]
gi|297686343|ref|XP_002820714.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Pongo abelii]
gi|297686345|ref|XP_002820715.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 14
[Pongo abelii]
gi|395741477|ref|XP_003777588.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Pongo abelii]
gi|395741481|ref|XP_003777589.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Pongo abelii]
gi|397491662|ref|XP_003816768.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1 [Pan
paniscus]
gi|397491664|ref|XP_003816769.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2 [Pan
paniscus]
gi|397491666|ref|XP_003816770.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3 [Pan
paniscus]
gi|397491668|ref|XP_003816771.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4 [Pan
paniscus]
gi|397491670|ref|XP_003816772.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Pan
paniscus]
gi|397491672|ref|XP_003816773.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 6 [Pan
paniscus]
gi|397491674|ref|XP_003816774.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7 [Pan
paniscus]
gi|397491676|ref|XP_003816775.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 8 [Pan
paniscus]
gi|397491678|ref|XP_003816776.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 9 [Pan
paniscus]
gi|397491680|ref|XP_003816777.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 10
[Pan paniscus]
gi|397491682|ref|XP_003816778.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 11
[Pan paniscus]
gi|397491684|ref|XP_003816779.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 12
[Pan paniscus]
gi|397491686|ref|XP_003816780.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 13
[Pan paniscus]
gi|426364503|ref|XP_004049345.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Gorilla gorilla gorilla]
gi|426364505|ref|XP_004049346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Gorilla gorilla gorilla]
gi|426364507|ref|XP_004049347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Gorilla gorilla gorilla]
gi|426364509|ref|XP_004049348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 4
[Gorilla gorilla gorilla]
gi|1710628|sp|P52597.3|HNRPF_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; AltName: Full=Nucleolin-like protein
mcs94-1; Contains: RecName: Full=Heterogeneous nuclear
ribonucleoprotein F, N-terminally processed
gi|452048|gb|AAC37584.1| HnRNP F protein [Homo sapiens]
gi|12655155|gb|AAH01432.1| Heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|13279032|gb|AAH04254.1| Heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
gi|15990432|gb|AAH15580.1| HNRPF protein [Homo sapiens]
gi|67967777|dbj|BAE00371.1| unnamed protein product [Macaca fascicularis]
gi|76780063|gb|AAI06009.1| HNRPF protein [Homo sapiens]
gi|119607001|gb|EAW86595.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607002|gb|EAW86596.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607003|gb|EAW86597.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607004|gb|EAW86598.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|119607005|gb|EAW86599.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Homo
sapiens]
gi|123997411|gb|ABM86307.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|157929032|gb|ABW03801.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|168277548|dbj|BAG10752.1| heterogeneous nuclear ribonucleoprotein F [synthetic construct]
gi|193785530|dbj|BAG50896.1| unnamed protein product [Homo sapiens]
gi|343959614|dbj|BAK63664.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|355562388|gb|EHH18982.1| Heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|355782737|gb|EHH64658.1| Heterogeneous nuclear ribonucleoprotein F [Macaca fascicularis]
gi|380785399|gb|AFE64575.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|384946770|gb|AFI36990.1| heterogeneous nuclear ribonucleoprotein F [Macaca mulatta]
gi|410262002|gb|JAA18967.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262004|gb|JAA18968.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262006|gb|JAA18969.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410262008|gb|JAA18970.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299574|gb|JAA28387.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299576|gb|JAA28388.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299578|gb|JAA28389.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299580|gb|JAA28390.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410299582|gb|JAA28391.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340859|gb|JAA39376.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340861|gb|JAA39377.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340863|gb|JAA39378.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340865|gb|JAA39379.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340867|gb|JAA39380.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
gi|410340869|gb|JAA39381.1| heterogeneous nuclear ribonucleoprotein F [Pan troglodytes]
Length = 415
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF LG V AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S DSA + G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|229485446|sp|B2RYJ8.1|ESRP2_RAT RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|187469463|gb|AAI66804.1| Rbm35b protein [Rattus norvegicus]
Length = 716
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 247 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 306
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 307 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 350
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++DF D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 351 LRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAALRR 410
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 411 HKGMLGKRYIELFRSTAAEVQQVLNR 436
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV +F G+D +LFV H + + TG+AF +
Sbjct: 348 ILRLRGLPFSAGPADVLDFLGPECPVTGGVD--GLLFVRHPDGRPTGDAFALFACEELAQ 405
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A +P IP + G+D
Sbjct: 406 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRDC 465
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ + E
Sbjct: 466 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVER 519
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 520 ALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 554
>gi|157818053|ref|NP_001100893.1| epithelial splicing regulatory protein 2 [Rattus norvegicus]
gi|149038076|gb|EDL92436.1| RNA binding motif protein 35b (predicted) [Rattus norvegicus]
Length = 717
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++DF D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPADVLDFLGPECPVTGGVDGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV +F G+D +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPADVLDFLGPECPVTGGVD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A +P IP + G+D
Sbjct: 407 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRDC 466
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ + E
Sbjct: 467 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVER 520
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 521 ALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
>gi|332244100|ref|XP_003271210.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Nomascus leucogenys]
gi|332244102|ref|XP_003271211.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Nomascus leucogenys]
gi|332244104|ref|XP_003271212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Nomascus leucogenys]
Length = 415
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF LG V AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S DSA + G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|193643553|ref|XP_001946497.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Acyrthosiphon pisum]
Length = 518
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 113/209 (54%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV--------LFVHKNNKFTGEAFCVLGYPLQVD 109
VV++RGLP+ T D+ +F L V L + + + +GEA+ + +
Sbjct: 56 VVKMRGLPWSATADDIIKFLSILGEAKVKDGAAGVHLTMAREGRPSGEAYVEMESEEDLK 115
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
AL+++R++MG RY+EVFRSKR E I S + DS +
Sbjct: 116 AALKKDREHMGNRYIEVFRSKRSEMEWVIKKTGSTL-------------------DSVLD 156
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+RLRGLPF + KDDI+ FF+ ++ D I I + GR TGEAFV+F + E+++ A+
Sbjct: 157 DNCVRLRGLPFGSTKDDIVQFFQGLEMTPDGITIATDFTGRSTGEAFVQFVDRENAEKAL 216
Query: 230 AKDRMTLGSRYIELFPSSHEEM-DEALSR 257
K + +G RYIE+F SS E+ ++AL R
Sbjct: 217 QKHKEKIGHRYIEIFRSSLAEIRNQALQR 245
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +RGLPF A +DDI FF+ L I I N++ RP+GEA VEF N ED+ AM+K
Sbjct: 346 VVHMRGLPFKANEDDIATFFE--PLEPVDIRILFNNNNRPSGEANVEFGNKEDAMRAMSK 403
Query: 232 DRMTLGSRYIELF 244
D+ + RYIELF
Sbjct: 404 DKTYMQHRYIELF 416
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 37 SSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFT 95
+S +N PP+ P VV +RGLPF E D+A FF L+ VD+ + + NN+ +
Sbjct: 332 NSNNWNAPPSR-------PLYVVHMRGLPFKANEDDIATFFEPLEPVDIRILFNNNNRPS 384
Query: 96 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
GEA G A+ +++ M RY+E+F
Sbjct: 385 GEANVEFGNKEDAMRAMSKDKTYMQHRYIELF 416
>gi|344253993|gb|EGW10097.1| Epithelial splicing regulatory protein 2 [Cricetulus griseus]
Length = 697
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 228 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 287
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 288 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 331
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 332 LRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEEQAQAALRR 391
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 392 HKGMLGKRYIELFRSTAAEVQQVLNR 417
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF + Q
Sbjct: 329 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEEQAQ 386
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A +P IP + G+D
Sbjct: 387 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYATSPLLPTLTAPLLPIPFPLAGGTGRD- 445
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ ++E
Sbjct: 446 -----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSSER 500
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 501 ALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 535
>gi|444709335|gb|ELW50356.1| Epithelial splicing regulatory protein 2 [Tupaia chinensis]
Length = 848
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 116/206 (56%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 379 VVRARGLPWQSSDQDVARFFRGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 438
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 439 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 482
Query: 175 LRGLPFSAGKDDIMDFF-KDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D ++ + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 483 LRGLPFSAGPTDVLGFLGPDCPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 542
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ +AL+R
Sbjct: 543 HKGMLGKRYIELFRSTAAEVQQALTR 568
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 111/214 (51%), Gaps = 20/214 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV------DVLFV-HKNNKFTGEAFCVLGYPLQVDF 110
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 480 ILRLRGLPFSAGPTDVLGFL-GPDCPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQA 538
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
AL+R++ +G+RY+E+FRS E +A+ A+ +P IP + G+D
Sbjct: 539 ALRRHKGMLGKRYIELFRSTAAEVQQALTRYASSPLLPTLTAPLLPIPFPLAAGTGRD-- 596
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 597 ----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERA 652
Query: 226 KAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 653 LAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 686
>gi|313227785|emb|CBY22933.1| unnamed protein product [Oikopleura dioica]
Length = 559
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 21/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VR+RG+P+ C++ D+A+FF GL+I L +++N + +GEA + ALQR
Sbjct: 134 CVRVRGIPWQCSDHDLAKFFRGLNIPSGGVSLVLNQNGRRSGEALIRFENSEHRNLALQR 193
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+RQ+MG RY+EVF++ ++ + A + V S+ I R
Sbjct: 194 HRQHMGNRYIEVFKAPSIDFIQMNAGTLPQVERFLGQGSV----------------AIAR 237
Query: 175 LRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RGLPFSA K+DI+ F + V D I + ++G+PTG+AFV A+ +D+ A+ +
Sbjct: 238 MRGLPFSASKEDILQFLCEIHIVNGRDGIFLIKTAEGKPTGDAFVLLASEDDAVQALGRH 297
Query: 233 RMTLGSRYIELFPSSHEEMDEALSRG 258
+ L RY+E+F S+ E+ + L+R
Sbjct: 298 KANLRDRYVEVFRSTGAELHQVLTRA 323
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 116/217 (53%), Gaps = 20/217 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV---DVLFVHKN--NKFTGEAFCVLGYPLQVDFAL 112
+ R+RGLPF ++ D+ +F + IV D +F+ K K TG+AF +L AL
Sbjct: 235 IARMRGLPFSASKEDILQFLCEIHIVNGRDGIFLIKTAEGKPTGDAFVLLASEDDAVQAL 294
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD--VRGGSPHRSIPRAKSHDEGKDSAVHT 170
R++ N+ RYVEVFRS E ++ + ++ + GS H +P + S
Sbjct: 295 GRHKANLRDRYVEVFRSTGAELHQVLTRAMAAPIIPPGS-HTGLPFMMAQQYIPSSV--R 351
Query: 171 GILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAE-DSK 226
+RLRG+P+SA +DIM+F + F+L +H+ +N GRP+G+AF++ E S+
Sbjct: 352 NCVRLRGMPYSATLEDIMNFLGESSQFILPA-GVHMVLNQQGRPSGDAFIQLQAHEFASR 410
Query: 227 AAMAKD-----RMTLGSRYIELFPSSHEEMDEALSRG 258
A+ + + +G RY+E+F S +EM+ L G
Sbjct: 411 VALDVNKGGCHKKHMGERYVEVFQCSGDEMNLVLMGG 447
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 117 QNMGRRYVEVFR--SKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
Q+ G R +++ + K + YK N + ++ R + RA H+ ++ +R
Sbjct: 84 QSSGDRLLDMAKVEQKLSKDYKCDFNNLMEMISS---RLLTRACGHEIVEEDTC----VR 136
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+RG+P+ D+ FF+ + + + +N +GR +GEA + F N+E A+ + R
Sbjct: 137 VRGIPWQCSDHDLAKFFRGLNIPSGGVSLVLNQNGRRSGEALIRFENSEHRNLALQRHRQ 196
Query: 235 TLGSRYIELF 244
+G+RYIE+F
Sbjct: 197 HMGNRYIEVF 206
>gi|410923501|ref|XP_003975220.1| PREDICTED: G-rich sequence factor 1-like [Takifugu rubripes]
Length = 380
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 110/193 (56%), Gaps = 6/193 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF T+ D+A+FF LDIV+ + + +GEAF + + AL R
Sbjct: 187 VVRLRGLPFSSTKADIAQFFSDLDIVENGITIITDHAGRNSGEAFVQFFSKEEAEKALLR 246
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+R MG RY+EVF S+ +E Y + S V + H R + +++ +
Sbjct: 247 DRAVMGTRYIEVFPSRSEEVYSSKRMRNSGV-SDTGHSVRNRRTTSQSLVQNSLPLHYIH 305
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+RGLPF +D+++FF+ V+S+ + + DGRP+GEA V F ED+ AAM++DR
Sbjct: 306 MRGLPFQVSGEDVVNFFRPLVVSK--MLMEFGPDGRPSGEADVYFGRHEDAVAAMSRDRE 363
Query: 235 TLGSRYIELFPSS 247
+G RYIELF +S
Sbjct: 364 HIGGRYIELFLNS 376
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 123/229 (53%), Gaps = 29/229 (12%)
Query: 30 FYGTPPSSSFMYNPPPAYGYVSQP--PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VL 86
+Y S Y P PAY + ++ +V+++GL + CT D+ +FF I D V
Sbjct: 60 YYLQTGGSCDEYPPLPAYQHETEEERKEVFIVQVKGLLWSCTPQDLLKFFSDCRIRDGVK 119
Query: 87 FVH----KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV 142
+H K + TG AF + V+ AL+++RQ +G RYVEV+ EV
Sbjct: 120 GIHFTLNKMGRPTGIAFIEMEDEEDVNKALEKHRQYLGPRYVEVY-------------EV 166
Query: 143 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 202
++ S +I + + D G++RLRGLPFS+ K DI FF D + E+ I
Sbjct: 167 TE----SDAEAIMEKATGSQADD-----GVVRLRGLPFSSTKADIAQFFSDLDIVENGIT 217
Query: 203 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I + GR +GEAFV+F + E+++ A+ +DR +G+RYIE+FPS EE+
Sbjct: 218 IITDHAGRNSGEAFVQFFSKEEAEKALLRDRAVMGTRYIEVFPSRSEEV 266
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 147 GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHIT 204
GGS P E ++ I++++GL +S D++ FF D + + IH T
Sbjct: 65 GGSCDEYPPLPAYQHETEEERKEVFIVQVKGLLWSCTPQDLLKFFSDCRIRDGVKGIHFT 124
Query: 205 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+N GRPTG AF+E + ED A+ K R LG RY+E++ + + + + +
Sbjct: 125 LNKMGRPTGIAFIEMEDEEDVNKALEKHRQYLGPRYVEVYEVTESDAEAIMEKA 178
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQV 108
V P + +RGLPF + DV FF L + +L + + +GEA G
Sbjct: 295 VQNSLPLHYIHMRGLPFQVSGEDVVNFFRPLVVSKMLMEFGPDGRPSGEADVYFGRHEDA 354
Query: 109 DFALQRNRQNMGRRYVEVF 127
A+ R+R+++G RY+E+F
Sbjct: 355 VAAMSRDREHIGGRYIELF 373
>gi|354484335|ref|XP_003504344.1| PREDICTED: epithelial splicing regulatory protein 2 [Cricetulus
griseus]
Length = 707
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 238 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFEDSEQRDLALQR 297
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 298 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 341
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 342 LRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEEQAQAALRR 401
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 402 HKGMLGKRYIELFRSTAAEVQQVLNR 427
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF + Q
Sbjct: 339 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEEQAQ 396
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A +P IP + G+D
Sbjct: 397 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYATSPLLPTLTAPLLPIPFPLAGGTGRD- 455
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ ++E
Sbjct: 456 -----CVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSSER 510
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 511 ALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 545
>gi|355686618|gb|AER98119.1| epithelial splicing regulatory protein 2 [Mustela putorius furo]
Length = 650
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 182 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 241
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 242 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 285
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG +D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 286 LRGLPFSAGPEDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 345
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 346 HKGILGKRYIELFRSTAAEVQQVLNR 371
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 283 ILRLRGLPFSAGPEDVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 340
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 341 AALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAAGTGRDC 400
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 401 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAER 454
Query: 225 S-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + RY+E+ P S EEM L G
Sbjct: 455 ALAAAQGCHKKVMKERYVEVVPCSTEEMSRVLMGG 489
>gi|291232399|ref|XP_002736133.1| PREDICTED: fusilli-like [Saccoglossus kowalevskii]
Length = 636
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 21/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V++ RGLP+ ++ DVA+FF GLDI L ++ + GEA D ALQR
Sbjct: 221 VIKARGLPWQSSDKDVAKFFKGLDIGKGGVALCLNPQGRRNGEALVRFTCTEHRDLALQR 280
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+++ +E+ K A S+ S+ KD+ H I+R
Sbjct: 281 HKHHLGHRYIEVYKATGEEFLKIAAGSSSEA-------------SNFLAKDNG-HI-IVR 325
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D++ FF D +E+ + DGR TG+AFV F+ ++ +A+AK
Sbjct: 326 MRGLPFTATAKDVLVFFGDECPVSGAEEGVLFVRYPDGRSTGDAFVLFSTEANATSALAK 385
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LGSRYIELF S+ E+ + LSR
Sbjct: 386 HKENLGSRYIELFRSTTAEVQQVLSR 411
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 110/213 (51%), Gaps = 14/213 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T DV FF V VLFV + + + TG+AF + A
Sbjct: 323 IVRMRGLPFTATAKDVLVFFGDECPVSGAEEGVLFVRYPDGRSTGDAFVLFSTEANATSA 382
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSIPRAKSHDEGKDSAV 168
L ++++N+G RY+E+FRS E + ++ G P S+P S
Sbjct: 383 LAKHKENLGSRYIELFRSTTAEVQQVLSRYQQHPLIPNGPPPTGSVPILPQQMITSGSV- 441
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS- 225
+R+RGLPFSA +DIM F +F + +H+ +N GRP+G+AF++ +AE +
Sbjct: 442 -RDCIRMRGLPFSASVEDIMKFLGEFAHYIRPHGVHMVLNQQGRPSGDAFIQMISAEKAL 500
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
AA R +G RYIE+F S +EM+ L G
Sbjct: 501 HAAQQCHRKHMGERYIEVFQCSGDEMNFVLMGG 533
>gi|126330654|ref|XP_001364439.1| PREDICTED: g-rich sequence factor 1 isoform 1 [Monodelphis
domestica]
Length = 478
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 117/230 (50%), Gaps = 46/230 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+I+D+ FV H+ K TGEA+ P + AL ++
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIIDITFVMDHRGRKKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEV------SDVRGGSP------------------- 150
++ +G RY+E+F S+R E + + S ++GG
Sbjct: 310 KEEIGNRYIEIFPSRRNEVRTHVGSHKGKKVAPSLLKGGPEPGPSLDEHDRSEELRAMMT 369
Query: 151 ---------HRSIPR--AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 199
H+ P A++ D G ++H + +RGLPF A DI++FF
Sbjct: 370 FESEKEGELHKEAPEKSAEAADFGTMPSLH--FVHMRGLPFQANAQDIVNFFAPL----K 423
Query: 200 SIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 424 PVRITMEYSSSGKATGEADVHFETHEDAVAAMGKDRSHVQHRYIELFLNS 473
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV +FF I + ++++ K G+A + V AL
Sbjct: 150 LIRAQGLPWSCTVEDVLKFFFDCRIRNGENGIHFLLNRDGKRRGDALVEMESEQDVKKAL 209
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++ MG+RYVEV+ I NE D KS + AV+ G+
Sbjct: 210 EKHHLYMGQRYVEVYE---------INNEDVDAL----------MKSLQAKSNPAVNDGV 250
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP-TGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 251 VRLRGLPYSCNEKDIVDFFAGLNIID--ITFVMDHRGRKKTGEAYVQFEEPEMANQALLK 308
Query: 232 DRMTLGSRYIELFPSSHEEM 251
+ +G+RYIE+FPS E+
Sbjct: 309 HKEEIGNRYIEIFPSRRNEV 328
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A VE + +D K A+
Sbjct: 150 LIRAQGLPWSCTVEDVLKFFFDCRIRNGENGIHFLLNRDGKRRGDALVEMESEQDVKKAL 209
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K + +G RY+E++ ++E++D
Sbjct: 210 EKHHLYMGQRYVEVYEINNEDVD 232
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 396 PSLHFVHMRGLPFQANAQDIVNFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAVAAM 455
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 456 GKDRSHVQHRYIELF 470
>gi|348572536|ref|XP_003472048.1| PREDICTED: epithelial splicing regulatory protein 2 [Cavia
porcellus]
Length = 719
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 250 VVRARGLPWQSSDQDVARFFRGLNIARGGVALCLNAQGRRNGEALIRFTDREQRDLALQR 309
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 310 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 353
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 354 LRGLPFSAGPTDVLSFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 413
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 414 HKGMLGKRYIELFRSTAAEVQQVLNR 439
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 351 ILRLRGLPFSAGPTDVLSFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 408
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS---PHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + S S P IP + G+D
Sbjct: 409 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPSLTAPLLPIPFPLAAGTGRDC 468
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GR +G+AF++ +AE
Sbjct: 469 ------VRLRGLPYTATIEDILSFLGEAAADIQPHGVHMVLNQQGRLSGDAFIQMTSAER 522
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 523 ALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMGG 557
>gi|417404143|gb|JAA48844.1| Putative rna-binding protein fusilli [Desmodus rotundus]
Length = 717
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D+++F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPADVLEFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV EF G D +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPADVLEFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 407 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAAGTGRDC 466
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 467 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAER 520
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 521 ALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
>gi|291390369|ref|XP_002711679.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Oryctolagus cuniculus]
Length = 719
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 250 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 309
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 310 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 353
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 354 LRGLPFSAGPTDVLSFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 413
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 414 HKGMLGKRYIELFRSTAAEVQQVLNR 439
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 351 ILRLRGLPFSAGPTDVLSFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 408
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A+ +P +P + G+D
Sbjct: 409 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSSLLPTLTAPLLPLPFPLAPGTGRDC 468
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 469 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAER 522
Query: 225 SKAAMAKD-RMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 523 ALAAAQRSHKKVMKERYVEVVPCSTEEMSRVLMGG 557
>gi|395851365|ref|XP_003798231.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 415
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 112/199 (56%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D + F++ + + +GEAF LG V AL
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSNCTIHDGPGGIHFIYTREGRQSGEAFVELGSEDDVKMAL 70
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S DSA + G
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGF 111
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 112 VRLRGLPFGCTKEEIVLFFTGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 171
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 172 KERIGHRYIEVFKSSQEEV 190
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F + + + IH +GR +GEAFVE + +D K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSNCTIHDGPGGIHFIYTREGRQSGEAFVELGSEDDVKMAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA + A+ ++R
Sbjct: 290 CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 349
Query: 117 QNMGRRYVEVF 127
NM RY+E+F
Sbjct: 350 ANMQHRYIELF 360
>gi|73957227|ref|XP_851504.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Canis lupus familiaris]
Length = 717
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGILGKRYIELFRSTAAEVQQVLNR 437
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 407 AALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPALTAPLLPIPFPLAAGTGRDC 466
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 467 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAER 520
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 521 ALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
>gi|431914602|gb|ELK15790.1| Heterogeneous nuclear ribonucleoprotein F [Pteropus alecto]
Length = 414
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F G I D + F++ + + +GEAF L V AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGATGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S P S D D G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F ++ + + IH +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGATGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|410983807|ref|XP_003998228.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Felis catus]
Length = 717
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGILGKRYIELFRSTAAEVQQVLNR 437
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 407 AALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAAGTGRDC 466
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 467 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAER 520
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 521 ALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
>gi|348534060|ref|XP_003454521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Oreochromis niloticus]
Length = 401
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 107/199 (53%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ CT+ +VA FF DIV V F + K + +GEAF L AL
Sbjct: 9 VVRIRGLPWSCTQDEVASFFSDCDIVGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNAL 68
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
++R+ MG RY+EVF+S R E + RS P G +
Sbjct: 69 AKDRKYMGHRYIEVFKSNRSEMDWVLK------------RSGPADYDSCSGC-------M 109
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
LRLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 110 LRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPVDYQGRSTGEAFVQFASKEIAEKALGKH 169
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 170 KERIGHRYIEIFKSSRNEI 188
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S +D++ FF D V + + T + +GRP+GEAF+E AED K A+
Sbjct: 9 VVRIRGLPWSCTQDEVASFFSDCDIVGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNAL 68
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
AKDR +G RYIE+F S+ EMD L R
Sbjct: 69 AKDRKYMGHRYIEVFKSNRSEMDWVLKR 96
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H+G + +RGLPF A + DI FF L+ IHI M +G+ TGEA VEF + ED
Sbjct: 288 SGFHSGHFVHMRGLPFRATEGDIAKFFSP--LNPLRIHIDMAPNGKSTGEADVEFRSHED 345
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ AAM+KD+ + RYIELF +S +SR
Sbjct: 346 AVAAMSKDKNHMQHRYIELFLNSTASGAAEMSR 378
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A+FF L+ + + + + N K TGEA A+ +++
Sbjct: 296 VHMRGLPFRATEGDIAKFFSPLNPLRIHIDMAPNGKSTGEADVEFRSHEDAVAAMSKDKN 355
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 356 HMQHRYIELF 365
>gi|417400513|gb|JAA47194.1| Putative splicing factor hnrnp-f [Desmodus rotundus]
Length = 414
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F G I D + F++ + + +GEAF L V AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVAGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S P S D D G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F ++ + IH +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVAGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|410983809|ref|XP_003998229.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Felis catus]
Length = 726
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 257 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 316
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 317 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 360
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 361 LRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 420
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 421 HKGILGKRYIELFRSTAAEVQQVLNR 446
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 358 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 415
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 416 AALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAAGTGRDC 475
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 476 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAER 529
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 530 ALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 564
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H D ++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F
Sbjct: 245 HSSKADVVDSETVVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRF 304
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
++E A+ + + +G RYIE++ ++ EE
Sbjct: 305 VDSEQRDLALQRHKHHMGVRYIEVYKATGEE 335
>gi|194208736|ref|XP_001498922.2| PREDICTED: epithelial splicing regulatory protein 2-like [Equus
caballus]
Length = 659
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 190 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 249
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 250 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 293
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 294 LRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 353
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 354 HKGMLGKRYIELFRSTAAEVQQVLNR 379
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 291 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 348
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + S +P IP + +D
Sbjct: 349 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTVTAPLLPIPFPLAAGTERDC 408
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 409 ------VRLRGLPYTATIEDILSFLGEAAADIQPHGVHMVLNQQGRPSGDAFIQMTSAER 462
Query: 225 S-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + RY+E+ P S +EM L G
Sbjct: 463 ALGAAQRCHKKVMKERYVEVVPCSTDEMSRVLMGG 497
>gi|301775691|ref|XP_002923260.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Ailuropoda melanoleuca]
gi|281349933|gb|EFB25517.1| hypothetical protein PANDA_012380 [Ailuropoda melanoleuca]
Length = 723
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 254 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 313
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 314 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 357
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 358 LRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 417
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 418 HKGILGKRYIELFRSTAAEVQQVLNR 443
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 355 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 412
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 413 AALRRHKGILGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAAGTGRDC 472
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 473 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAER 526
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 527 ALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 561
>gi|426242551|ref|XP_004015136.1| PREDICTED: epithelial splicing regulatory protein 2 [Ovis aries]
Length = 591
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 122 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 181
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 182 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 225
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 226 LRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 285
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 286 HKGMLGKRYIELFRSTAAEVQQVLNR 311
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 223 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 280
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 281 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAAGSGRDC 340
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 341 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAER 394
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 395 ALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGG 429
>gi|28849887|ref|NP_789808.1| epithelial splicing regulatory protein 2 [Mus musculus]
gi|81914552|sp|Q8K0G8.1|ESRP2_MOUSE RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|21618665|gb|AAH31444.1| RNA binding motif protein 35b [Mus musculus]
gi|148679398|gb|EDL11345.1| RNA binding motif protein 35b [Mus musculus]
Length = 717
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPTDVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A +P IP + G+D
Sbjct: 407 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYAASPLLPTLTAPLLPIPFPLAGGTGRDC 466
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ + E
Sbjct: 467 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMMSVER 520
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 521 ALAAAQRCHKKMMKERYVEVVPCSTEEMSRVLMGG 555
>gi|329664166|ref|NP_001192614.1| epithelial splicing regulatory protein 2 [Bos taurus]
Length = 717
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 407 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAAGTGRDC 466
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 467 ------VRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTSAER 520
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 521 ALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGG 555
>gi|351699543|gb|EHB02462.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 372
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 117/211 (55%), Gaps = 24/211 (11%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF CT+ ++ +FF GL+IV L V K TGEAF + AL ++
Sbjct: 112 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 171
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDVRGGSPH---------------RSIPRAK 158
++ +G RY+EVF+S ++E Y + + V+ P+ + R +
Sbjct: 172 KERIGHRYIEVFKSSQEEVRSYSDPPLKFTSVQQPGPYDHPDTARRYIGIVKQAGLERMR 231
Query: 159 SHDEGKDSAVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
S+ +G+ + T + +RGLP+ A ++DI +FF L+ +HI + DGR TGEA
Sbjct: 232 SYGDGEFTVQSTTGHCVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEAD 289
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
VEFA E++ AAM+KDR + RYIELF +S
Sbjct: 290 VEFATHEEAVAAMSKDRANMQHRYIELFLNS 320
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S P S D D G
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 111
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 112 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 171
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 172 KERIGHRYIEVFKSSQEEV 190
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
>gi|311262314|ref|XP_003129120.1| PREDICTED: G-rich sequence factor 1-like [Sus scrofa]
Length = 479
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 118/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIA-------------------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E + NEV+ DVR +
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEENEVNEDVRPMT 369
Query: 150 PHRS-----IPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 370 AFESEKEIELPKEMSEKLPEAVDFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 423
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 424 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 474
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 104/201 (51%), Gaps = 29/201 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RSIPRAKSHDEGKDSAVHTG 171
+++R MG+RYVEV+ I NE D + H +S P V+ G
Sbjct: 210 EKHRMYMGQRYVEVYE---------INNEDVDALMKNLHVKSTP-----------VVNDG 249
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMA 230
++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALL 307
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K R +G+RYIE+FPS E+
Sbjct: 308 KHREEIGNRYIEIFPSRRNEV 328
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|301768278|ref|XP_002919563.1| PREDICTED: g-rich sequence factor 1-like [Ailuropoda melanoleuca]
Length = 717
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 114/231 (49%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 488 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 547
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS---------------------- 153
R+ +G RY+E+F S+R E + + SP
Sbjct: 548 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMSSSPTAKYITEPEMVFEEHEVNEDIRPMT 607
Query: 154 ---------IPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
+P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 608 AFESEKEIELPKEMSEKLPEAVDFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 661
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S+G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 662 KPVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 712
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 388 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 447
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 448 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKSSPVVNDGV 488
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 489 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 546
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 547 HREEIGNRYIEIFPSRRNEV 566
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 388 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 447
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 448 EKHRMYMGQRYVEVYEINNEDVD 470
>gi|291401649|ref|XP_002717080.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like, partial
[Oryctolagus cuniculus]
Length = 482
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 110/229 (48%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 253 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 312
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 313 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEVVFEEHEVNEDIRPIT 372
Query: 151 ----HRSIPRAKSHDEGKDSAVHTGI------LRLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E AV G + +RGLPF A DI++FF
Sbjct: 373 AFESEKEIELPKEMSEKLPEAVDLGTTPSLHFVHMRGLPFQANAQDIINFFAPL----KP 428
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 429 VRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 477
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 115/239 (48%), Gaps = 34/239 (14%)
Query: 26 QGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFH 78
+G S + + ++++ + PP Y P ++R +GLP+ CT DV FF
Sbjct: 114 RGESSWDSESKTTYLEDLPPLPEYELAPSKIGEEVDDVFLIRAQGLPWSCTVEDVLSFFS 173
Query: 79 GLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 133
I + ++++ K G+A + V AL+++R MG+RYVEV+
Sbjct: 174 DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE----- 228
Query: 134 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193
I NE D KS V+ G++RLRGLP+S + DI+DFF
Sbjct: 229 ----INNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAG 274
Query: 194 FVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ + I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 275 LNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 331
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 153 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 212
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 213 EKHRMYMGQRYVEVYEINNEDVD 235
>gi|410912106|ref|XP_003969531.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Takifugu
rubripes]
Length = 371
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 106/199 (53%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ CT+ +VA FF DI+ V F + K + +GEAF L AL
Sbjct: 9 VVRIRGLPWSCTQEEVAGFFSDCDIIGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNAL 68
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
++R+ MG RY+EVF+S R E + RS P G
Sbjct: 69 AKDRKYMGHRYIEVFKSNRSEMDWVLK------------RSGPADYDSCSG-------CT 109
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
LRLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 110 LRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPVDYQGRSTGEAFVQFASKEIAEKALGKH 169
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 170 KERIGHRYIEIFKSSRNEI 188
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 112/243 (46%), Gaps = 47/243 (19%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+RLRGLPF C++ ++ +FF GL IV L V + TGEAF + AL +
Sbjct: 109 TLRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPVDYQGRSTGEAFVQFASKEIAEKALGK 168
Query: 115 NRQNMGRRYVEVFRSKRQE---YYKAIANEVSDVRGGSPHRSI----------------- 154
+++ +G RY+E+F+S R E YY+ + R G R +
Sbjct: 169 HKERIGHRYIEIFKSSRNEIRAYYELPRRGMGGQRPGPYDRPMISGPRGGFFGPGPGRGG 228
Query: 155 -------------------PRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDF 194
+ +D G H+G + +RGLPF A + D+ FF
Sbjct: 229 SLMEPMRSGGGYGGGMGGHGYSGQNDGG--PGFHSGHFVHMRGLPFRATEGDVAKFFSP- 285
Query: 195 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
L+ +HI +G+ TGEA VEF + ED+ AAM+KD+ + RYIELF +S
Sbjct: 286 -LNPLRVHIDFAPNGKSTGEADVEFRSHEDAVAAMSKDKNHMQHRYIELFLNSTSSGASE 344
Query: 255 LSR 257
L R
Sbjct: 345 LGR 347
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S ++++ FF D + + + T + +GRP+GEAF+E AED K A+
Sbjct: 9 VVRIRGLPWSCTQEEVAGFFSDCDIIGKVNGVCFTYSKEGRPSGEAFIELKTAEDFKNAL 68
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
AKDR +G RYIE+F S+ EMD L R
Sbjct: 69 AKDRKYMGHRYIEVFKSNRSEMDWVLKR 96
>gi|355693777|gb|AER99447.1| G-rich RNA sequence binding factor 1 [Mustela putorius furo]
Length = 360
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 120/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 132 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 191
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIA-------------------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E + +EVS D+R +
Sbjct: 192 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMVFEEHEVSEDIRPMT 251
Query: 150 PHRS-----IPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 252 AFESEKEIELPKEMSEKLPEAADFGTASSLH--FVHMRGLPFQANAQDIINFFAPL---- 305
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S+G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 306 KPVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 356
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 32 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 91
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 92 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKASPVVNDGV 132
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 133 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 190
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 191 HREEIGNRYIEIFPSRRNEV 210
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 32 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 91
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 92 EKHRMYMGQRYVEVYEINNEDVD 114
>gi|19527048|ref|NP_598595.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|25742579|ref|NP_071792.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546815|ref|NP_001032362.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546817|ref|NP_001032363.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|82546819|ref|NP_001032364.1| heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|261878597|ref|NP_001159899.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878599|ref|NP_001159900.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878601|ref|NP_001159901.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878603|ref|NP_001159902.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878605|ref|NP_001159903.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|261878607|ref|NP_001159904.1| heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|81911895|sp|Q794E4.3|HNRPF_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|81918016|sp|Q9Z2X1.3|HNRPF_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|4153896|dbj|BAA37095.1| ribonucleoprotein F [Rattus norvegicus]
gi|17390408|gb|AAH18185.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|19343662|gb|AAH25481.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|22137695|gb|AAH29163.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|23274049|gb|AAH33483.1| Heterogeneous nuclear ribonucleoprotein F [Mus musculus]
gi|66911957|gb|AAH97275.1| Heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|73909045|gb|AAI03635.1| Heterogeneous nuclear ribonucleoprotein F [Rattus norvegicus]
gi|148667168|gb|EDK99584.1| mCG133010, isoform CRA_a [Mus musculus]
gi|149049635|gb|EDM02089.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049636|gb|EDM02090.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049637|gb|EDM02091.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049638|gb|EDM02092.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049639|gb|EDM02093.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
gi|149049640|gb|EDM02094.1| heterogeneous nuclear ribonucleoprotein F, isoform CRA_a [Rattus
norvegicus]
Length = 415
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 117/218 (53%), Gaps = 32/218 (14%)
Query: 39 FMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNK 93
M P GYV V+LRGLP+ C+ DV F I D V F++ + +
Sbjct: 1 MMLGPEGGEGYV--------VKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGR 52
Query: 94 FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 153
+GEAF L V AL+++R++MG RY+EVF+S R E + + S
Sbjct: 53 QSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------S 100
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
P + DSA + G +RLRGLPF K++I+ FF + + I + ++ +G+ TG
Sbjct: 101 GPNSA------DSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITG 153
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
EAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 154 EAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|332227572|ref|XP_003262966.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Nomascus leucogenys]
Length = 717
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKAMLGKRYIELFRSTAAEVQQVLNR 437
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 409 LRRHKAMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAPGTGRDC-- 466
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 467 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 523 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
>gi|432852531|ref|XP_004067294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 398
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 106/199 (53%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ CT+ +VA FF DI+ V F + K + +GEAF L AL
Sbjct: 9 VVRIRGLPWSCTQEEVASFFSDCDIMGKINGVCFTYSKEGRPSGEAFLELKTAEDFKNAL 68
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
++R+ MG RY+EVF+S R E + K + + +
Sbjct: 69 AKDRKYMGHRYIEVFKSNRSEMDWVL-------------------KRNGPADYDSCSGCM 109
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
LRLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 110 LRLRGLPFGCSKEEIVQFFSGLRIVPNGITLPVDYQGRSTGEAFVQFASKEIAEKALGKH 169
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 170 KERIGHRYIEIFKSSRNEI 188
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S ++++ FF D + + + T + +GRP+GEAF+E AED K A+
Sbjct: 9 VVRIRGLPWSCTQEEVASFFSDCDIMGKINGVCFTYSKEGRPSGEAFLELKTAEDFKNAL 68
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
AKDR +G RYIE+F S+ EMD L R
Sbjct: 69 AKDRKYMGHRYIEVFKSNRSEMDWVLKR 96
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A + D+ FF + +HI + +G+ TGEA VEF + ED
Sbjct: 289 SGYHNGHFVHMRGLPFRASEGDVAKFFSPLIPLR--VHIDVAPNGKSTGEADVEFRSHED 346
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 347 AVAAMSKDKNHMQHRYIELFLNS 369
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF +E DVA+FF L + V + V N K TGEA A+ +++
Sbjct: 297 VHMRGLPFRASEGDVAKFFSPLIPLRVHIDVAPNGKSTGEADVEFRSHEDAVAAMSKDKN 356
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 357 HMQHRYIELF 366
>gi|62460420|ref|NP_001014860.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|426255584|ref|XP_004021428.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Ovis aries]
gi|426255586|ref|XP_004021429.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Ovis aries]
gi|426255588|ref|XP_004021430.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Ovis aries]
gi|75070041|sp|Q5E9J1.3|HNRPF_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein F;
Short=hnRNP F; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein F, N-terminally processed
gi|59858223|gb|AAX08946.1| heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|74355042|gb|AAI02956.1| Heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|296472206|tpg|DAA14321.1| TPA: heterogeneous nuclear ribonucleoprotein F [Bos taurus]
gi|440903473|gb|ELR54126.1| Heterogeneous nuclear ribonucleoprotein F, partial [Bos grunniens
mutus]
Length = 414
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S P S D D G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|26345420|dbj|BAC36361.1| unnamed protein product [Mus musculus]
Length = 421
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 117/218 (53%), Gaps = 32/218 (14%)
Query: 39 FMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNK 93
M P GYV V+LRGLP+ C+ DV F I D V F++ + +
Sbjct: 1 MMLGPEGGEGYV--------VKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGR 52
Query: 94 FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 153
+GEAF L V AL+++R++MG RY+EVF+S R E + + S
Sbjct: 53 QSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------S 100
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
P + DSA + G +RLRGLPF K++I+ FF + + I + ++ +G+ TG
Sbjct: 101 GPNSA------DSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITG 153
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
EAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 154 EAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 191
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|344284915|ref|XP_003414210.1| PREDICTED: G-rich sequence factor 1 [Loxodonta africana]
Length = 484
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 111/229 (48%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 255 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 314
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 315 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMVFEEHEVNEDIPAMT 374
Query: 151 ----HRSIPRAKSHDEGKDSAVHTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E AV G + +RGLPF A DI++FF
Sbjct: 375 TFESEKEIELPKEMSEKLPEAVDFGATPSVHFVHMRGLPFQANAQDIINFFAPL----KP 430
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F+ ED+ AAM KDR + RYIELF +S
Sbjct: 431 VRITMEYSSSGKATGEADVHFSTHEDAVAAMLKDRSHVHHRYIELFLNS 479
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 100/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 155 LIRAQGLPWSCTVEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESQQDVQKAL 214
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 215 GKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKASPVVNDGV 255
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 256 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 313
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 314 HREEIGNRYIEIFPSRRNEV 333
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 155 LIRAQGLPWSCTVEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESQQDVQKAL 214
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 215 GKHRMYMGQRYVEVYEINNEDVD 237
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 402 PSVHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFSTHEDAVAAM 461
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 462 LKDRSHVHHRYIELF 476
>gi|332227574|ref|XP_003262967.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Nomascus leucogenys]
Length = 727
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 361
Query: 175 LRGLPFSAGKDDIMDFF---KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 362 LRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 421
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 422 HKAMLGKRYIELFRSTAAEVQQVLNR 447
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 419 LRRHKAMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAPGTGRDC-- 476
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 477 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 532
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 533 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 565
>gi|194042674|ref|XP_001929089.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5 [Sus
scrofa]
gi|335301642|ref|XP_003359253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa]
gi|350592730|ref|XP_003483523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Sus scrofa]
Length = 414
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S P S D D G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIRDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA +++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHDEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHDE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|348560746|ref|XP_003466174.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Cavia
porcellus]
Length = 414
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S P S D D G
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 111
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 112 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 171
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 172 KERIGHRYIEVFKSSQEEV 190
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 289 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 346
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 347 DRANMQHRYIELFLNS 362
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 280 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 339
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 340 AVAAMSKDRANMQHRYIELF 359
>gi|291412565|ref|XP_002722547.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Oryctolagus cuniculus]
Length = 415
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S P S D D G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA + A+ ++R
Sbjct: 290 CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 349
Query: 117 QNMGRRYVEVF 127
NM RY+E+F
Sbjct: 350 ANMQHRYIELF 360
>gi|73997922|ref|XP_848697.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Canis lupus familiaris]
gi|73997926|ref|XP_856894.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 5
[Canis lupus familiaris]
gi|73997930|ref|XP_856973.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 7
[Canis lupus familiaris]
gi|301763831|ref|XP_002917330.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 1
[Ailuropoda melanoleuca]
gi|301763833|ref|XP_002917331.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 2
[Ailuropoda melanoleuca]
gi|301763835|ref|XP_002917332.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 3
[Ailuropoda melanoleuca]
gi|301763837|ref|XP_002917333.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 4
[Ailuropoda melanoleuca]
gi|410975641|ref|XP_003994239.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 1
[Felis catus]
gi|410975643|ref|XP_003994240.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 2
[Felis catus]
gi|410975645|ref|XP_003994241.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F isoform 3
[Felis catus]
gi|281338546|gb|EFB14130.1| hypothetical protein PANDA_005550 [Ailuropoda melanoleuca]
Length = 414
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S P S D D G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|344274318|ref|XP_003408964.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Loxodonta africana]
Length = 414
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSECKIHDGVAGVHFIYTREGRQSGEAFVELESEEDVKMAL 70
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S P S D D G
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 111
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 112 VRLRGLPFGCTKEEIVQFFSGLEIMPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 171
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 172 KERIGHRYIEVFKSSQEEV 190
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F + + + +H +GR +GEAFVE + ED K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSECKIHDGVAGVHFIYTREGRQSGEAFVELESEEDVKMAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 289 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 346
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 347 DRANMQHRYIELFLNS 362
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 280 FAVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 339
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 340 AVAAMSKDRANMQHRYIELF 359
>gi|321459051|gb|EFX70109.1| hypothetical protein DAPPUDRAFT_202511 [Daphnia pulex]
Length = 514
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 129/259 (49%), Gaps = 33/259 (12%)
Query: 12 DGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEV 71
+ ++MG QRL+ +G F P + + P + VVR RGLP+ ++
Sbjct: 131 EAQDMGRILQRLLKEGHKFEN--PETIHLRLEPGICSKDEEVDSNTVVRARGLPWQSSDQ 188
Query: 72 DVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
D+A FF GL++ L + + GEA P D AL+R++ ++G+RY+EV
Sbjct: 189 DIARFFRGLNVARGGVALCLSPQGRRNGEALVRFISPEHRDMALKRHKHHIGQRYIEV-- 246
Query: 129 SKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG--ILRLRGLPFSAGKDD 186
YKA + DV GG ++E ++ +G I+R+RGLP+
Sbjct: 247 ------YKATGEDFIDVAGGI----------NNEAQNFLSRSGQVIVRMRGLPYDCTAKQ 290
Query: 187 IMDFFKD-------FVLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
+++FF+ VL DS + DGR TG+AFV FA E+ A+AK R +GS
Sbjct: 291 VVEFFESGGEDVGSTVLDGDSGVLFVKKHDGRATGDAFVMFATEEEGSKALAKHRDIIGS 350
Query: 239 RYIELFPSSHEEMDEALSR 257
RYIELF S+ E+ + L+R
Sbjct: 351 RYIELFRSTTAEVQQVLNR 369
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 24/224 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH------GLDIVD----VLFVHKNN-KFTGEAFCVLGYPL 106
+VR+RGLP+DCT V EFF G ++D VLFV K++ + TG+AF +
Sbjct: 276 IVRMRGLPYDCTAKQVVEFFESGGEDVGSTVLDGDSGVLFVKKHDGRATGDAFVMFATEE 335
Query: 107 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
+ AL ++R +G RY+E+FRS E + + + + IP+ +
Sbjct: 336 EGSKALAKHRDIIGSRYIELFRSTTAEVQQVLNRSMDPRTYETQAPLIPQLPQMPLLPQN 395
Query: 167 AVHTG----ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFA 220
+ +G +RLRGLP+ A + I++F + S +H+ N+ G+P+GEAF++
Sbjct: 396 MITSGTRKDCIRLRGLPYEAQVEHILEFLGEHAKSIVYQGVHMVYNAQGQPSGEAFIQM- 454
Query: 221 NAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALSRG 258
++E S A+ R M G RYIE+F S E+M L+ G
Sbjct: 455 DSEQSSFQAAQQRHHRYMVFGKKQRYIEVFQCSGEDMHVVLTGG 498
>gi|344290717|ref|XP_003417084.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 2-like [Loxodonta africana]
Length = 717
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 109/206 (52%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VIRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + D+ ILR
Sbjct: 308 HKHHMGIRYIEVYKATGEEFVK--------IAGGTSLEVVRFLSREDQV--------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+
Sbjct: 352 LRGLPFSAGPADVLAFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRS 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 XQGMLGKRYIELFRSTAAEVQQILNR 437
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPADVLAFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+ + +G+RY+E+FRS E + + A+ +P IP G+D
Sbjct: 407 AALRSXQGMLGKRYIELFRSTAAEVQQILNRYASSSLLPTLTAPLLPIPFPLVAGTGRDC 466
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 467 ------VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAER 520
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 521 ALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
>gi|73975377|ref|XP_532402.2| PREDICTED: G-rich sequence factor 1 [Canis lupus familiaris]
Length = 372
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 120/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 143 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 202
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIA-------------------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E + +EV+ D+R +
Sbjct: 203 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMAFEEHEVNEDIRPMT 262
Query: 150 PHRS-----IPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 263 AFESEKEIELPKEMSEKLPEAVDFGATSSLH--FVHMRGLPFQANAQDIINFFAPL---- 316
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S+G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 317 KPVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 367
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 43 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 102
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 103 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKSSPVVNDGV 143
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 144 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 201
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 202 HREEIGNRYIEIFPSRRNEV 221
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 43 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 102
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 103 EKHRMYMGQRYVEVYEINNEDVD 125
>gi|281347672|gb|EFB23256.1| hypothetical protein PANDA_008197 [Ailuropoda melanoleuca]
Length = 362
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 120/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIA-------------------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E + +EV+ D+R +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMSSSPTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 150 PHRS-----IPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 253 AFESEKEIELPKEMSEKLPEAVDFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 306
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S+G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 307 KPVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 33 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 93 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKSSPVVNDGV 133
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 134 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 191
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 192 HREEIGNRYIEIFPSRRNEV 211
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|74761482|sp|Q9H6T0.1|ESRP2_HUMAN RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|10438126|dbj|BAB15173.1| unnamed protein product [Homo sapiens]
gi|119603620|gb|EAW83214.1| RNA binding motif protein 35B, isoform CRA_a [Homo sapiens]
Length = 727
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 361
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 362 LRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 421
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 422 HKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 476
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 477 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 532
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 533 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 565
>gi|426382631|ref|XP_004057907.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Gorilla gorilla gorilla]
Length = 727
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 361
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 362 LRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 421
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 422 HKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 476
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 477 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 532
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 533 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 565
>gi|45935393|ref|NP_079215.2| epithelial splicing regulatory protein 2 [Homo sapiens]
gi|20988380|gb|AAH30146.1| Epithelial splicing regulatory protein 2 [Homo sapiens]
gi|119603622|gb|EAW83216.1| RNA binding motif protein 35B, isoform CRA_c [Homo sapiens]
Length = 717
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 466
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 467 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 523 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
>gi|397487054|ref|XP_003814628.1| PREDICTED: epithelial splicing regulatory protein 2, partial [Pan
paniscus]
Length = 713
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 244 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 303
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 304 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 347
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 348 LRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 407
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 408 HKGMLGKRYIELFRSTAAEVQQVLNR 433
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 345 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 404
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 405 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 462
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 463 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 518
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 519 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 551
>gi|426382629|ref|XP_004057906.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Gorilla gorilla gorilla]
Length = 717
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGTEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 466
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 467 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 523 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
>gi|114663263|ref|XP_511052.2| PREDICTED: epithelial splicing regulatory protein 2 isoform 2 [Pan
troglodytes]
Length = 717
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 466
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 467 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 523 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
>gi|410957462|ref|XP_003985346.1| PREDICTED: G-rich sequence factor 1 [Felis catus]
Length = 361
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 120/230 (52%), Gaps = 46/230 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIA------------------------NEVS-DVRGGSP 150
R+ +G RY+E+F S+R E + +EV+ D+R +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSPTAKYITEPEMVFEEHEVNEDIRPMTA 252
Query: 151 HRS-----IPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 199
S +P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 253 FESEKEIELPKEMSEKLPEAVDFGTPSSLH--FVHMRGLPFQANAQDIINFFAPL----K 306
Query: 200 SIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S+G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 307 PVRITMEYSSNGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 356
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 102/200 (51%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 33 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS AV+ G+
Sbjct: 93 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKSSPAVNDGV 133
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 134 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 191
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 192 HREEIGNRYIEIFPSRRNEV 211
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTIEDVVNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFA 111
P V +RGLPF D+ FF L V + + +N K TGEA A
Sbjct: 278 PSSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSNGKATGEADVHFDTHEDAVAA 337
Query: 112 LQRNRQNMGRRYVEVF 127
+ ++R ++ RY+E+F
Sbjct: 338 MLKDRSHVHHRYIELF 353
>gi|297699054|ref|XP_002826612.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Pongo abelii]
Length = 727
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 361
Query: 175 LRGLPFSAGKDDIMDFF---KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 362 LRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 421
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 422 HKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + S +P IP + G+D
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPVLPTLTAPLLPIPFPLAPGTGRDC-- 476
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 477 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 532
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 533 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 565
>gi|114663265|ref|XP_001167050.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1 [Pan
troglodytes]
Length = 727
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 258 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 317
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 318 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 361
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 362 LRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 421
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 422 HKGMLGKRYIELFRSTAAEVQQVLNR 447
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 359 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 418
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 419 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 476
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 477 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 532
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 533 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 565
>gi|149690626|ref|XP_001490069.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like isoform 1
[Equus caballus]
gi|338717722|ref|XP_003363688.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Equus
caballus]
Length = 414
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFIELESEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S P S D D G
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAF+E + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFIELESEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 290 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 348 DRANMQHRYIELFLNS 363
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 281 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 340
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 341 AVAAMSKDRANMQHRYIELF 360
>gi|297699056|ref|XP_002826613.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Pongo abelii]
Length = 717
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 349 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 408
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + S +P IP + G+D
Sbjct: 409 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPVLPTLTAPLLPIPFPLAPGTGRDC-- 466
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 467 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 522
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 523 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 555
>gi|380812104|gb|AFE77927.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
gi|380812106|gb|AFE77928.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
Length = 479
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 114/231 (49%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH------------------------ 151
R+ +G RY+E+F S+R E + + SP
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMT 369
Query: 152 -----------RSIPRA--KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
+ +P ++ D G S++H + +RGLPF A DI++FF
Sbjct: 370 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 423
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 424 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 474
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 114/239 (47%), Gaps = 35/239 (14%)
Query: 27 GPS-FYGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFH 78
GP+ Y ++++ + PP Y P ++R +GLP+ CT DV FF
Sbjct: 111 GPTRSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVYLIRAQGLPWSCTMEDVLNFFS 170
Query: 79 GLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 133
I + ++++ K G+A + V AL+++R MG+RYVEV+
Sbjct: 171 DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE----- 225
Query: 134 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193
I NE D KS V+ G++RLRGLP+S + DI+DFF
Sbjct: 226 ----INNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAG 271
Query: 194 FVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ + I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 272 LNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|148673403|gb|EDL05350.1| G-rich RNA sequence binding factor 1, isoform CRA_b [Mus musculus]
Length = 403
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 110/229 (48%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 174 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 233
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 234 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 293
Query: 151 ----HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E AV G L +RGLPF A DI++FF
Sbjct: 294 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KP 349
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 350 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 398
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 117/261 (44%), Gaps = 34/261 (13%)
Query: 4 RGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP------ 57
R G GR G + G+ ++++ + PP Y P
Sbjct: 13 RPPIGHGNKGRSHGPGSSCFVPSESGRLGSESKTTYLEDLPPLPEYELSPSKLGDEVDDV 72
Query: 58 -VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFA 111
++R +GLP+ CT DV FF I + ++++ K G+A + V A
Sbjct: 73 YLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKA 132
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+++R MG+RYVEV+ I NE D KS + G
Sbjct: 133 LEKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKPSPVLSDG 173
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMA 230
++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+
Sbjct: 174 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALL 231
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K R +G+RYIE+FPS E+
Sbjct: 232 KHREEIGNRYIEIFPSRRNEV 252
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 74 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 133
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 134 EKHRMYMGQRYVEVYEINNEDVD 156
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 321 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 380
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 381 LKDRSHVQHRYIELF 395
>gi|350529357|ref|NP_001121205.2| G-rich RNA sequence binding factor 1 [Xenopus laevis]
Length = 440
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 15/222 (6%)
Query: 44 PPAYGYVSQPPPFPV-----VRLRGLPFDCTEVDVAEFF------HGLDIVDVLFVHKNN 92
PP Y SQP + VR+RGLP+ CT DV FF +G D V +F +++
Sbjct: 76 PPLPEYDSQPLTIKITTMFIVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIF-NRDG 134
Query: 93 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 152
K G+A V A++++++ MG+RYVEVF ++E +++ N + SP R
Sbjct: 135 KPRGDAVIEFESAEDVQKAVEQHKKYMGQRYVEVFEMNQKEA-ESLLNRMHSAL--SPTR 191
Query: 153 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 212
+ S S GI+RLRGLP+S + DI+ FF ++++ I ++ GR +
Sbjct: 192 PSSMSLSPQSSMASPPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKS 251
Query: 213 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
GEAFV+F + E + A+ K + +GSRYIE+FPS ++ A
Sbjct: 252 GEAFVQFLSQEHADQALLKHKQEIGSRYIEIFPSRRNDVQTA 293
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 109/235 (46%), Gaps = 41/235 (17%)
Query: 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD--VLFV-HKNNKFTGEAFCVLGYPLQ 107
+ PP +VRLRGLP+ C+E D+ FF GLDI D + FV + + +GEAF
Sbjct: 204 ASPPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEH 263
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKA-------------------------IANEV 142
D AL +++Q +G RY+E+F S+R + A I N
Sbjct: 264 ADQALLKHKQEIGSRYIEIFPSRRNDVQTARFPFRRRKGVTFAPTIKDLYDPDNCINNTS 323
Query: 143 SDVRGGSPHR----------SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 192
D+ P S HD S VH + +RGLPF A DI +FF
Sbjct: 324 KDLLSDVPENGHINDYVKEMSAKSVDVHDFTVMSPVHD--IHIRGLPFHASGQDIANFFH 381
Query: 193 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ + SI + ++ G TGEA V F +D+ AAMAK+R Y+EL+ +S
Sbjct: 382 PIMPLKISIEYSADAGG-ATGEAVVRFLTHDDAVAAMAKNRCHSQHGYLELYLNS 435
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I+R+RGLP+S DD+++FF D + D +H N DG+P G+A +EF +AED + A+
Sbjct: 95 IVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIFNRDGKPRGDAVIEFESAEDVQKAV 154
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ + +G RY+E+F + +E + L+R
Sbjct: 155 EQHKKYMGQRYVEVFEMNQKEAESLLNR 182
>gi|148596934|ref|NP_848815.2| G-rich sequence factor 1 isoform 1 [Mus musculus]
gi|55976518|sp|Q8C5Q4.2|GRSF1_MOUSE RecName: Full=G-rich sequence factor 1; Short=GRSF-1
gi|26336891|dbj|BAC32129.1| unnamed protein product [Mus musculus]
gi|182888413|gb|AAI60216.1| G-rich RNA sequence binding factor 1 [synthetic construct]
Length = 479
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 110/229 (48%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 369
Query: 151 ----HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E AV G L +RGLPF A DI++FF
Sbjct: 370 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KP 425
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 426 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 110/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 116 YSQESKTTYLEDLPPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIR 175
Query: 84 DV-----LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 176 NSENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 226
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS + G++RLRGLP+S + DI+DFF + +
Sbjct: 227 NNEDVDAL----------MKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 276
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 277 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 457 LKDRSHVQHRYIELF 471
>gi|388452478|ref|NP_001253931.1| G-rich sequence factor 1 [Macaca mulatta]
gi|383417775|gb|AFH32101.1| G-rich sequence factor 1 isoform 1 [Macaca mulatta]
Length = 479
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 114/231 (49%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH------------------------ 151
R+ +G RY+E+F S+R E + + SP
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMT 369
Query: 152 -----------RSIPRA--KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
+ +P ++ D G S++H + +RGLPF A DI++FF
Sbjct: 370 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 423
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 424 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 474
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 114/239 (47%), Gaps = 35/239 (14%)
Query: 27 GPS-FYGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFH 78
GP+ Y ++++ + PP Y P ++R +GLP+ CT DV FF
Sbjct: 111 GPTRSYSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVYLIRAQGLPWSCTMEDVLNFFS 170
Query: 79 GLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 133
I + ++++ K G+A + V AL+++R MG+RYVEV+
Sbjct: 171 DCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE----- 225
Query: 134 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193
I NE D KS V+ G++RLRGLP+S + DI+DFF
Sbjct: 226 ----INNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAG 271
Query: 194 FVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ + I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 272 LNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|26337751|dbj|BAC32561.1| unnamed protein product [Mus musculus]
Length = 479
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 110/229 (48%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 369
Query: 151 ----HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E AV G L +RGLPF A DI++FF
Sbjct: 370 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KP 425
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 426 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 110/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 116 YSQESKTTYLEDLPPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIR 175
Query: 84 DV-----LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 176 NSENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 226
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS + G++RLRGLP+S + DI+DFF + +
Sbjct: 227 NNEDVDAL----------MKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 276
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 277 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
Score = 37.0 bits (84), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 457 LKDRSHVQHRYIELF 471
>gi|347968776|ref|XP_312018.5| AGAP002892-PA [Anopheles gambiae str. PEST]
gi|333467847|gb|EAA08189.6| AGAP002892-PA [Anopheles gambiae str. PEST]
Length = 589
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 113/207 (54%), Gaps = 30/207 (14%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDI--VDVLFVHKNNKFTGEAFCVLGYPLQVD--FALQR 114
VRLRGLP+ TE ++ F HG++I V + F + + TGEA+ + P Q D A R
Sbjct: 56 VRLRGLPWSITEDEIRSFLHGVNILHVHICFHPQTKRQTGEAYIRV--PTQADRNKAFSR 113
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
N+Q +G RY+E F + +++ A+ E+ + G P +++
Sbjct: 114 NKQTIGHRYIEFFNATEEQFEMALQ-EMDEGESGGP---------------------VVK 151
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RGLP+++ KDD+ FF+ + + I + +++ GR +GEA VEFA D++ AM K
Sbjct: 152 MRGLPWTSTKDDVKAFFQGLTIKNGYNGILLLLDNLGRASGEAIVEFATEADAETAMGKH 211
Query: 233 RMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +G+RYIELF S+ EM A R R
Sbjct: 212 KEKIGNRYIELFRSNTGEMRRAEKRMR 238
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RG+PFS + D+ DFF L + MNS RP+GE F E++ AM K
Sbjct: 482 CVHMRGMPFSCDEQDMYDFF--MPLRPVKCVVQMNSRKRPSGEGDAYFETKEEAIKAMRK 539
Query: 232 DRMTLGSRYIELFPSSHE 249
D+ +GSRYIELF +
Sbjct: 540 DKEKMGSRYIELFAGQRQ 557
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFA 111
PVV++RGLP+ T+ DV FF GL I + +L + + +GEA + A
Sbjct: 148 PVVKMRGLPWTSTKDDVKAFFQGLTIKNGYNGILLLLDNLGRASGEAIVEFATEADAETA 207
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKA 137
+ ++++ +G RY+E+FRS E +A
Sbjct: 208 MGKHKEKIGNRYIELFRSNTGEMRRA 233
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQ 107
+ S P V +RG+PF C E D+ +FF L V V+ ++ + +GE +
Sbjct: 473 FASDEPNLYCVHMRGMPFSCDEQDMYDFFMPLRPVKCVVQMNSRKRPSGEGDAYFETKEE 532
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQ 132
A++++++ MG RY+E+F +RQ
Sbjct: 533 AIKAMRKDKEKMGSRYIELFAGQRQ 557
>gi|403290547|ref|XP_003936375.1| PREDICTED: epithelial splicing regulatory protein 2 [Saimiri
boliviensis boliviensis]
Length = 715
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 306 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 349
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 350 LRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 409
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 410 HKGMLGKRYIELFRSTAAEVQQVLNR 435
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 110/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 347 ILRLRGLPFSAGPTDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP A + G+D
Sbjct: 407 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFALAAGTGRDC-- 464
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 465 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 520
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 521 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 553
>gi|440905418|gb|ELR55795.1| Epithelial splicing regulatory protein 2, partial [Bos grunniens
mutus]
Length = 759
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 19/204 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 283 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 342
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDE--GKDSAVHTGI 172
++ +MG RY+EV+++ +E+ K + GG H P ++ V I
Sbjct: 343 HKHHMGVRYIEVYKATGEEFVK--------IAGGDSHAPPPPPLEVARFLSREDQV---I 391
Query: 173 LRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
LRLRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+
Sbjct: 392 LRLRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAAL 451
Query: 230 AKDRMTLGSRYIELFPSSHEEMDE 253
+ + LG RYIELF S+ E+ +
Sbjct: 452 RRHKGMLGKRYIELFRSTAAEVQQ 475
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 391 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 448
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD---VRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + A+ S +P IP + G+D
Sbjct: 449 AALRRHKGMLGKRYIELFRSTAAEVQQPAASFPSSPLLPTLTAPLLPIPFPLAAGTGRD- 507
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 508 -----CVRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTSAER 562
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 563 ALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGG 597
>gi|296478109|tpg|DAA20224.1| TPA: fusilli-like [Bos taurus]
Length = 717
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 111/206 (53%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VV RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVWARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 351
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 352 LRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 411
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 412 HKGMLGKRYIELFRSTAAEVQQVLNR 437
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-------GLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVD 109
++RLRGLPF DV F G D +LFV H + + TG+AF +
Sbjct: 349 ILRLRGLPFSAGPADVLGFLGPECPVTGGAD--GLLFVRHPDGRPTGDAFALFACEELAQ 406
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 407 AALRRHKGMLGKRYIELFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAAGTGRDC 466
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE
Sbjct: 467 ------VRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTSAER 520
Query: 225 SKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + + + RY+E+ P S EEM L G
Sbjct: 521 ALAAAQRCHKKAMKERYVEVVPCSTEEMSRVLMGG 555
>gi|148596982|ref|NP_001091946.1| G-rich sequence factor 1 isoform 2 [Mus musculus]
Length = 362
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 110/229 (48%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 252
Query: 151 ----HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E AV G L +RGLPF A DI++FF
Sbjct: 253 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KP 308
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 309 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 357
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 100/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 33 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS + G+
Sbjct: 93 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKPSPVLSDGV 133
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 134 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 191
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 192 HREEIGNRYIEIFPSRRNEV 211
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 280 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 339
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 340 LKDRSHVQHRYIELF 354
>gi|148673402|gb|EDL05349.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Mus musculus]
Length = 429
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 110/229 (48%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 200 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 259
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 260 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 319
Query: 151 ----HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E AV G L +RGLPF A DI++FF
Sbjct: 320 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KP 375
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 376 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 424
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 100/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 100 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 159
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS + G+
Sbjct: 160 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKPSPVLSDGV 200
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 201 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 258
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 259 HREEIGNRYIEIFPSRRNEV 278
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 100 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 159
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 160 EKHRMYMGQRYVEVYEINNEDVD 182
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 347 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 406
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 407 LKDRSHVQHRYIELF 421
>gi|118151012|ref|NP_001071439.1| G-rich sequence factor 1 [Bos taurus]
gi|117306552|gb|AAI26704.1| G-rich RNA sequence binding factor 1 [Bos taurus]
Length = 481
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 120/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P AL ++
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 311
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D+R +
Sbjct: 312 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMT 371
Query: 150 PHRS-----IPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 372 AFESEKEIELPKEMSEKIPEAVDFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 425
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 426 KPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 476
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 29/201 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 152 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RSIPRAKSHDEGKDSAVHTG 171
+++R MG+RYVEV+ I NE D S H +S P V+ G
Sbjct: 212 EKHRMYMGQRYVEVYE---------INNEDVDALMKSLHVKSAP-----------MVNDG 251
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMA 230
++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMASQALL 309
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K R +G+RYIE+FPS E+
Sbjct: 310 KHREEIGNRYIEIFPSRRNEV 330
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 152 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
K RM +G RY+E++ ++E++D +
Sbjct: 212 EKHRMYMGQRYVEVYEINNEDVDALM 237
>gi|390361159|ref|XP_798587.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 3
[Strongylocentrotus purpuratus]
Length = 500
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 108/201 (53%), Gaps = 29/201 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH------GLDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDF 110
+VR RGLP+ T D+ FF G D V FVH + +GE F V V
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGAD--GVKFVHLPGGRPSGECFVVFESHDDVLK 64
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
L++N ++G RY+EVFRSK E E RGG +AK ++G
Sbjct: 65 GLKKNNNHIGHRYIEVFRSKNSEM------EWVTSRGGD------KAKEENDG------- 105
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+RLRGLPF DDI DFFK++ ++ED I + + DGR TGEA+V+F + + ++ A++
Sbjct: 106 -CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGALS 164
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F + E+
Sbjct: 165 KHKANMGHRYIEVFQCNASEI 185
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I+R RGLP+SA +DI+ FF + V+ D + GRP+GE FV F + +D +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGL 66
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
K+ +G RYIE+F S + EM+ SRG
Sbjct: 67 KKNNNHIGHRYIEVFRSKNSEMEWVTSRG 95
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPFDC D+ +FF I + L + + TGEA+ + AL +
Sbjct: 106 CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGALSK 165
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIAN 140
++ NMG RY+EVF+ E + +N
Sbjct: 166 HKANMGHRYIEVFQCNASEIKRFNSN 191
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLP+ A ++DI FF + + +N GR TGEA +F E ++AAM K
Sbjct: 317 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVN--GRSTGEADADFQTVEAAQAAMTKH 374
Query: 233 RMTLGSRYIELFPSSHE 249
+ +G RYIELF ++ E
Sbjct: 375 KSEMGPRYIELFLNTDE 391
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFF-HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLP+ TE D+ +FF +V+ N + TGEA A+ +++
Sbjct: 317 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHKS 376
Query: 118 NMGRRYVEVF 127
MG RY+E+F
Sbjct: 377 EMGPRYIELF 386
>gi|390361163|ref|XP_003729860.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 2
[Strongylocentrotus purpuratus]
Length = 521
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 108/201 (53%), Gaps = 29/201 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH------GLDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDF 110
+VR RGLP+ T D+ FF G D V FVH + +GE F V V
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGAD--GVKFVHLPGGRPSGECFVVFESHDDVLK 64
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
L++N ++G RY+EVFRSK E E RGG +AK ++G
Sbjct: 65 GLKKNNNHIGHRYIEVFRSKNSEM------EWVTSRGGD------KAKEENDG------- 105
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+RLRGLPF DDI DFFK++ ++ED I + + DGR TGEA+V+F + + ++ A++
Sbjct: 106 -CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGALS 164
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F + E+
Sbjct: 165 KHKANMGHRYIEVFQCNASEI 185
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I+R RGLP+SA +DI+ FF + V+ D + GRP+GE FV F + +D +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGL 66
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
K+ +G RYIE+F S + EM+ SRG
Sbjct: 67 KKNNNHIGHRYIEVFRSKNSEMEWVTSRG 95
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPFDC D+ +FF I + L + + TGEA+ + AL +
Sbjct: 106 CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGALSK 165
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIAN 140
++ NMG RY+EVF+ E + +N
Sbjct: 166 HKANMGHRYIEVFQCNASEIKRFNSN 191
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLP+ A ++DI FF + + +N GR TGEA +F E ++AAM K
Sbjct: 332 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVN--GRSTGEADADFQTVEAAQAAMTKH 389
Query: 233 RMTLGSRYIELFPSSHE 249
+ +G RYIELF ++ E
Sbjct: 390 KSEMGPRYIELFLNTDE 406
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFF-HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLP+ TE D+ +FF +V+ N + TGEA A+ +++
Sbjct: 332 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHKS 391
Query: 118 NMGRRYVEVF 127
MG RY+E+F
Sbjct: 392 EMGPRYIELF 401
>gi|355687360|gb|EHH25944.1| G-rich sequence factor 1, partial [Macaca mulatta]
Length = 362
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIA-------------------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E + +EV+ D+R +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 253 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 306
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 307 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 34/228 (14%)
Query: 37 SSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIVD----- 84
++++ + PP Y P ++R +GLP+ CT DV FF I +
Sbjct: 5 TTYLEDLPPPPEYELAPSKLEEEVDDVYLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGI 64
Query: 85 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 144
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 65 HFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVD 115
Query: 145 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
KS V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 116 AL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 163
Query: 205 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 164 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|351714958|gb|EHB17877.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 414
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 110/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RY+EVF+S R E + + S P S D D G
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 111
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 112 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPKGKITGEAFVQFASQELAEKALWKH 171
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 172 KERIGHRYIEVFKSSQEEV 190
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 289 CVHMRGLPYKATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 346
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 347 DRANMQHRYIELFLNS 362
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ + V + + + + TGEA +
Sbjct: 280 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEE 339
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 340 AVAAMSKDRANMQHRYIELF 359
>gi|390361161|ref|XP_003729859.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 1
[Strongylocentrotus purpuratus]
Length = 515
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 108/201 (53%), Gaps = 29/201 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH------GLDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDF 110
+VR RGLP+ T D+ FF G D V FVH + +GE F V V
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGAD--GVKFVHLPGGRPSGECFVVFESHDDVLK 64
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
L++N ++G RY+EVFRSK E E RGG +AK ++G
Sbjct: 65 GLKKNNNHIGHRYIEVFRSKNSEM------EWVTSRGGD------KAKEENDG------- 105
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+RLRGLPF DDI DFFK++ ++ED I + + DGR TGEA+V+F + + ++ A++
Sbjct: 106 -CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGALS 164
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F + E+
Sbjct: 165 KHKANMGHRYIEVFQCNASEI 185
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I+R RGLP+SA +DI+ FF + V+ D + GRP+GE FV F + +D +
Sbjct: 7 IVRARGLPWSATAEDIVTFFSESVIEGGADGVKFVHLPGGRPSGECFVVFESHDDVLKGL 66
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
K+ +G RYIE+F S + EM+ SRG
Sbjct: 67 KKNNNHIGHRYIEVFRSKNSEMEWVTSRG 95
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPFDC D+ +FF I + L + + TGEA+ + AL +
Sbjct: 106 CVRLRGLPFDCRTDDINDFFKEYQIAEDGITLPTDYDGRSTGEAYVQFVSKDIAEGALSK 165
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIAN 140
++ NMG RY+EVF+ E + +N
Sbjct: 166 HKANMGHRYIEVFQCNASEIKRFNSN 191
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLP+ A ++DI FF + + +N GR TGEA +F E ++AAM K
Sbjct: 332 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVN--GRSTGEADADFQTVEAAQAAMTKH 389
Query: 233 RMTLGSRYIELFPSSHE 249
+ +G RYIELF ++ E
Sbjct: 390 KSEMGPRYIELFLNTDE 406
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFF-HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLP+ TE D+ +FF +V+ N + TGEA A+ +++
Sbjct: 332 IHMRGLPYKATEEDIHQFFGQTASPCNVVIQKVNGRSTGEADADFQTVEAAQAAMTKHKS 391
Query: 118 NMGRRYVEVF 127
MG RY+E+F
Sbjct: 392 EMGPRYIELF 401
>gi|442755167|gb|JAA69743.1| Putative splicing factor hnrnp-f [Ixodes ricinus]
Length = 279
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F G I D + F++ + + +GEAF L V AL
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVSGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RY+EVF+S R E + + S P S D D G
Sbjct: 72 KKDRERMGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNRITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E++
Sbjct: 173 KERIGHRYIEVFKSSQEKV 191
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F ++ + IH +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSGCIIHDGVSGIHFIYTREGRQSGEAFVELESEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR +G RYIE+F S EMD L
Sbjct: 72 KKDRERMGHRYIEVFKSHRTEMDWVL 97
>gi|109128999|ref|XP_001098015.1| PREDICTED: epithelial splicing regulatory protein 2-like isoform 1
[Macaca mulatta]
Length = 715
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 306 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 349
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 350 LRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 409
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 410 HKGMLGKRYIELFRSTAAEVQQVLNR 435
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF +DV F V +LFV H + + TG+AF + A
Sbjct: 347 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 407 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 464
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 465 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 520
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
A + + + RY+E+ P S EEM L G
Sbjct: 521 ATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 553
>gi|26354144|dbj|BAC40702.1| unnamed protein product [Mus musculus]
Length = 344
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 110/229 (48%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 115 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 174
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 175 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 234
Query: 151 ----HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E AV G L +RGLPF A DI++FF
Sbjct: 235 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KP 290
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 291 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 339
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 100/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 15 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 74
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS + G+
Sbjct: 75 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKPSPVLSDGV 115
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 116 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 173
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 174 HREEIGNRYIEIFPSRRNEV 193
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 15 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 74
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 75 EKHRMYMGQRYVEVYEINNEDVD 97
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 262 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 321
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 322 LKDRSHVQHRYIELF 336
>gi|242017929|ref|XP_002429436.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514368|gb|EEB16698.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 766
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 114/217 (52%), Gaps = 30/217 (13%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFA 111
P VVR RGLP+ ++ D+A FF GL+I L + + GEA D A
Sbjct: 192 PNSVVRARGLPWQSSDGDIARFFRGLNIEKGGVALCLSPAGRRNGEALVRFVNQAHRDMA 251
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+R++ +MG+RY+EV++S +E+ V GGS E + G
Sbjct: 252 LKRHKHHMGQRYIEVYKSTGEEFVF--------VAGGS----------STEAHNFLTRGG 293
Query: 172 --ILRLRGLPFSAGKDDIMDFFK-------DFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
I+R+RGLP+ + +++FF+ + + ED + SDGR TG+AFV F+N
Sbjct: 294 QVIIRMRGLPYECTAEQVLEFFRTGENNTCEVLDGEDGVLFVKKSDGRATGDAFVLFSNE 353
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
D+ A++K R +GSRYIELF S+ E+ + L+R +
Sbjct: 354 SDAPKALSKHRERIGSRYIELFRSTTAEVQQVLNRAQ 390
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 25/226 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-----HGLDIVD----VLFVHKNN-KFTGEAFCVLGYPLQ 107
++R+RGLP++CT V EFF + +++D VLFV K++ + TG+AF +
Sbjct: 296 IIRMRGLPYECTAEQVLEFFRTGENNTCEVLDGEDGVLFVKKSDGRATGDAFVLFSNESD 355
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR------GGSPHRSIPRAKSHD 161
AL ++R+ +G RY+E+FRS E + + D + +P
Sbjct: 356 APKALSKHRERIGSRYIELFRSTTAEVQQVLNRAQEDPKPVPVQLPPQLPTPLPTTLYPQ 415
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+ S +RLRGLP+ A + I+DF D+ + +H+ NS G+P+GEAF++
Sbjct: 416 QLITSGTSKNCIRLRGLPYEAQVEHILDFLGDYAKNIVFQGVHMVYNSHGQPSGEAFIQM 475
Query: 220 ANAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALSRGR 259
++E S A R M G RY+E+F S ++M+ L+ G+
Sbjct: 476 -DSEASAFHAANHRHHQYMIFGKKQRYVEVFQCSGDDMNSILTGGQ 520
>gi|402908821|ref|XP_003917133.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 1
[Papio anubis]
Length = 715
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 306 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 349
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 350 LRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 409
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 410 HKGMLGKRYIELFRSTAAEVQQVLNR 435
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF +DV F V +LFV H + + TG+AF + A
Sbjct: 347 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 407 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 464
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 465 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 520
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
A + + + RY+E+ P S EEM L G
Sbjct: 521 ATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 553
>gi|395541913|ref|XP_003772881.1| PREDICTED: G-rich sequence factor 1 [Sarcophilus harrisii]
Length = 441
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 42/228 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV H+ + TGEA+ P + AL ++
Sbjct: 213 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDHRGRRKTGEAYVQFEEPEMANQALLKH 272
Query: 116 RQNMGRRYVEVFRSKRQEY---------YKAI-------------------ANEVSDVRG 147
++ +G RY+E+F S+R E KA+ + E+ +
Sbjct: 273 KEEIGNRYIEIFPSRRNEVRTHVGSHKGKKAVPSMAKYGTEPELNFEEHDGSEELRPITT 332
Query: 148 GSPHRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDSI 201
+ + K E A G L +RGLPF A DI++FF +
Sbjct: 333 FESEKEMELPKEAPEKTPEAADFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KPV 388
Query: 202 HITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
ITM +S G+ TGEA V F ED+ AAM+KDR + RYIELF +S
Sbjct: 389 RITMEYSSSGKATGEADVHFETHEDAIAAMSKDRSHVQHRYIELFLNS 436
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 34/229 (14%)
Query: 36 SSSFMYNPPPAYGY-------VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---- 84
S+S++ + PP Y + ++R +GLP+ CT DV +FF I +
Sbjct: 84 SNSYLEDIPPLSEYDLATSKLGEEEDDIYLIRAQGLPWSCTVEDVLKFFSDCRIRNGEHG 143
Query: 85 -VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 143
++++ K G+A L V AL+++ MG+RYVEV+ I NE
Sbjct: 144 IHFLLNRDGKRRGDALVELESEQDVKKALEKHHLYMGQRYVEVYE---------INNEDV 194
Query: 144 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
D KS + V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 195 DAL----------MKSLQAKSNPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITF 242
Query: 204 TMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M+ GR TGEA+V+F E + A+ K + +G+RYIE+FPS E+
Sbjct: 243 VMDHRGRRKTGEAYVQFEEPEMANQALLKHKEEIGNRYIEIFPSRRNEV 291
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + E IH +N DG+ G+A VE + +D K A+
Sbjct: 113 LIRAQGLPWSCTVEDVLKFFSDCRIRNGEHGIHFLLNRDGKRRGDALVELESEQDVKKAL 172
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K + +G RY+E++ ++E++D
Sbjct: 173 EKHHLYMGQRYVEVYEINNEDVD 195
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 359 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFETHEDAIAAM 418
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 419 SKDRSHVQHRYIELF 433
>gi|297284292|ref|XP_002802581.1| PREDICTED: epithelial splicing regulatory protein 2-like isoform 2
[Macaca mulatta]
Length = 725
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 256 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 315
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 316 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 359
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 360 LRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 419
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 420 HKGMLGKRYIELFRSTAAEVQQVLNR 445
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF +DV F V +LFV H + + TG+AF + A
Sbjct: 357 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 416
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 417 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 474
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 475 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 530
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
A + + + RY+E+ P S EEM L G
Sbjct: 531 ATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 563
>gi|355710319|gb|EHH31783.1| hypothetical protein EGK_12921, partial [Macaca mulatta]
Length = 688
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 219 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 278
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 279 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 322
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 323 LRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 382
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 383 HKGMLGKRYIELFRSTAAEVQQVLNR 408
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF +DV F V +LFV H + + TG+AF + A
Sbjct: 320 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 379
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 380 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 437
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 438 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 493
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
A + + + RY+E+ P S EEM L G
Sbjct: 494 ATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 526
>gi|517196|gb|AAC95399.1| G-rich sequence factor-1 [Homo sapiens]
Length = 424
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 120/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 195 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 254
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVSDV----- 145
R+ +G RY+E+F S+R E K IA +EV++V
Sbjct: 255 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEVFQPMT 314
Query: 146 -----RGGSPHRSIPRA--KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
+ + +P ++ D G S++H + +RGLPF A DI++FF
Sbjct: 315 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 368
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 369 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 419
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 61 YSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIR 120
Query: 84 D-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 121 NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 171
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS V+ G++RLRGLP+S + DI+DFF + +
Sbjct: 172 NNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 221
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 222 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 273
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 95 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 154
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 155 EKHRMYMGQRYVEVYEINNEDVD 177
>gi|355756893|gb|EHH60501.1| hypothetical protein EGM_11873, partial [Macaca fascicularis]
Length = 635
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 166 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 225
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 226 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 269
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 270 LRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 329
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 330 HKGMLGKRYIELFRSTAAEVQQVLNR 355
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF +DV F V +LFV H + + TG+AF + A
Sbjct: 267 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 326
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 327 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 384
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 385 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 440
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
A + + + RY+E+ P S EEM L G
Sbjct: 441 ATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 473
>gi|402908823|ref|XP_003917134.1| PREDICTED: epithelial splicing regulatory protein 2 isoform 2
[Papio anubis]
Length = 725
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL++ L ++ + GEA Q D ALQR
Sbjct: 256 VVRARGLPWQSSDQDVARFFKGLNVARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 315
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 316 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 359
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 360 LRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 419
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 420 HKGMLGKRYIELFRSTAAEVQQVLNR 445
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF +DV F V +LFV H + + TG+AF + A
Sbjct: 357 ILRLRGLPFSAGPMDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 416
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 417 LRRHKGMLGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC-- 474
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 475 ----VRLRGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 530
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
A + + + RY+E+ P S EEM L G
Sbjct: 531 ATAQRCHKKVMKERYVEVVPCSTEEMSRVLMGG 563
>gi|221040122|dbj|BAH11824.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 115/231 (49%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEY------YKA-----------------------IANEVSDVR 146
R+ +G RY+E+F S+R E YK + ++ +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 252
Query: 147 GGSPHRSIPRAK--------SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
+ I K + D G S++H + +RGLPF A DI++FF
Sbjct: 253 ASESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 306
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 307 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 34/228 (14%)
Query: 37 SSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIVD----- 84
++++ + PP Y P ++R +GLP+ CT DV FF I +
Sbjct: 5 TTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGI 64
Query: 85 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 144
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 65 HFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVD 115
Query: 145 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
KS V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 116 AL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 163
Query: 205 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 164 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|151555768|gb|AAI49234.1| GRSF1 protein [Bos taurus]
Length = 362
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 120/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D+R +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 150 PHRS-----IPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 253 AFESEKEIELPKEMSEKIPEAVDFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 306
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 307 KPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 29/201 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RSIPRAKSHDEGKDSAVHTG 171
+++R MG+RYVEV+ I NE D S H +S P V+ G
Sbjct: 93 EKHRMYMGQRYVEVYE---------INNEDVDALMKSLHVKSAP-----------MVNDG 132
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMA 230
++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMASQALL 190
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K R +G+RYIE+FPS E+
Sbjct: 191 KHREEIGNRYIEIFPSRRNEV 211
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|291243063|ref|XP_002741419.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1-like
[Saccoglossus kowalevskii]
Length = 628
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 107/203 (52%), Gaps = 25/203 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
V+R RGLP+ T +V FF G I + + F + + + +GE F L V AL
Sbjct: 96 VIRARGLPWSATADEVRSFFKGCKIAETENGIKFTYTREGRPSGECFIELETEEDVKVAL 155
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+R+ +MG RYVEVFRSK+ E I RS P A ++G
Sbjct: 156 ERHNDHMGHRYVEVFRSKKSEMDWVIK------------RSGPNAVQDNDG--------C 195
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I FF + + I + + GR TGEA+V+F+ + ++ A+ K
Sbjct: 196 VRLRGLPFGCSKEEIAQFFGGLEIVANGITLPTDYHGRSTGEAYVQFSTKDIAENALGKH 255
Query: 233 RMTLGSRYIELFPSSHEEMDEAL 255
+ +G RYIE+F SS EE+ +AL
Sbjct: 256 KERIGHRYIEIFKSSKEEVRQAL 278
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 9/100 (9%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFV 217
HD+G ++R RGLP+SA D++ FFK + +E+ I T +GRP+GE F+
Sbjct: 91 HDDGN-------VIRARGLPWSATADEVRSFFKGCKIAETENGIKFTYTREGRPSGECFI 143
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
E ED K A+ + +G RY+E+F S EMD + R
Sbjct: 144 ELETEEDVKVALERHNDHMGHRYVEVFRSKKSEMDWVIKR 183
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +RGLPF A +I FF+ ++ +HI S GR TGEA VEFA ED+ A M+K
Sbjct: 427 VIHMRGLPFRATDQEIRQFFQP--VNPTKVHIQYESGGRATGEADVEFATHEDAVAGMSK 484
Query: 232 DRMTLGSRYIELFPSSHE 249
D+ + RYIELF +S +
Sbjct: 485 DKAHMQHRYIELFLNSSQ 502
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNR 116
V+ +RGLPF T+ ++ +FF ++ V +++ + TGEA + +++
Sbjct: 427 VIHMRGLPFRATDQEIRQFFQPVNPTKVHIQYESGGRATGEADVEFATHEDAVAGMSKDK 486
Query: 117 QNMGRRYVEVFRSKRQ 132
+M RY+E+F + Q
Sbjct: 487 AHMQHRYIELFLNSSQ 502
>gi|440905001|gb|ELR55451.1| G-rich sequence factor 1, partial [Bos grunniens mutus]
Length = 362
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 120/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D+R +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 150 PHRS-----IPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 253 AFESEKEIELPKEMSEKIPEAVDFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 306
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 307 KPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 29/201 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RSIPRAKSHDEGKDSAVHTG 171
+++R MG+RYVEV+ I NE D S H +S P V+ G
Sbjct: 93 EKHRMYMGQRYVEVYE---------INNEDVDALMKSLHVKSAP-----------MVNDG 132
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMA 230
++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMASQALL 190
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K R +G+RYIE+FPS E+
Sbjct: 191 KHREEIGNRYIEIFPSRRNEV 211
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|90084329|dbj|BAE91006.1| unnamed protein product [Macaca fascicularis]
Length = 318
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 148
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIA-------------------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E + +EV+ D+R +
Sbjct: 149 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMT 208
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 209 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 262
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 263 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 86 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 145
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 22 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 72
Query: 146 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 73 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 120
Query: 206 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 121 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 167
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 185 DDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
+D+++FF D + E+ IH +N DG+ G+A +E + +D + A+ K RM +G RY+E
Sbjct: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
Query: 243 LFPSSHEEMD 252
++ ++E++D
Sbjct: 62 VYEINNEDVD 71
>gi|395853861|ref|XP_003799417.1| PREDICTED: epithelial splicing regulatory protein 2 [Otolemur
garnettii]
Length = 715
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 246 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 305
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 306 HKHHMGIRYIEVYKATGEEFVK--------IAGGT-SIEVARFLSREDQV-------ILR 349
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F + + + DGRPTG+AF FA E ++AA+ +
Sbjct: 350 LRGLPFSAGPPDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAALRR 409
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIE+F S+ E+ + L+R
Sbjct: 410 HKGMLGKRYIEIFRSTAAEVQQVLNR 435
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 18/213 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF DV F V +LFV H + + TG+AF + A
Sbjct: 347 ILRLRGLPFSAGPPDVLGFLGPECPVTGGAEGLLFVRHPDGRPTGDAFALFACEELAQAA 406
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
L+R++ +G+RY+E+FRS E + + A+ +P IP + G+D
Sbjct: 407 LRRHKGMLGKRYIEIFRSTAAEVQQVLNRYASSPLLPTLTAPLLPIPFPLAAGTGRDC-- 464
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE +
Sbjct: 465 ----VRLRGLPYTATIEDILSFLGEAAVDIRPHGVHMVLNQQGRPSGDAFIQMTSAERAL 520
Query: 227 AAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
AA + + + RY+E+ P S EEM L G
Sbjct: 521 AAAQRCHKKVMKERYVEVVPCSTEEMSRVLIGG 553
>gi|338723562|ref|XP_001489151.2| PREDICTED: g-rich sequence factor 1 [Equus caballus]
Length = 362
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 119/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIANEVS------------------DVRGGS 149
R+ +G RY+E+F S+R E K +A+ ++ D+R +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSLTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 150 PHRS-----IPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 253 AFESEKEVELPKEMSEKLPETADFGTASSLH--FVHMRGLPFQANAQDIINFFAPL---- 306
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 307 KPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 34/228 (14%)
Query: 37 SSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIVD----- 84
++++ + PP Y P ++R +GLP+ CT DV FF I +
Sbjct: 5 TTYLEDLPPLPEYEVAPSKLGQDVDDVYLIRAQGLPWSCTIEDVLNFFSDCRIRNGENGI 64
Query: 85 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 144
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 65 HFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVD 115
Query: 145 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
KS V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 116 AL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 163
Query: 205 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 164 MDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|443682871|gb|ELT87306.1| hypothetical protein CAPTEDRAFT_189098 [Capitella teleta]
Length = 639
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 117/206 (56%), Gaps = 23/206 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+R RGLP+ ++ D+A FF GL+I + + + GEA D AL++++
Sbjct: 182 VIRARGLPWQSSDQDIARFFQGLNIAN-----QQGRRNGEALIRFESKEHRDLALRKHKH 236
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
++G+RY+EV+R+ +++ ++ GG+ + H + + I+R+RG
Sbjct: 237 HLGQRYIEVYRASGKDFL--------NIAGGNNTEAQAFLSRHSDSGNQV----IVRMRG 284
Query: 178 LPFSAGKDDIMDFFK------DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LP++ + +++FF+ + + ++ I +DGR TG+AFV FAN +D+ A++K
Sbjct: 285 LPYTCTAEQVLEFFRQGEQSVEVLDGDEGILFVHQADGRATGDAFVLFANDDDATRALSK 344
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
R ++G+RYIELF S+ E+ + L+R
Sbjct: 345 HRESIGTRYIELFKSTTAEVQQVLNR 370
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAKDR 233
++GLPF+ DI+ FF+ + + + SDGR TGEA++ F + +E +A ++R
Sbjct: 567 IKGLPFNVQVADILAFFEGIYEMQPDVQVQRGSDGRLTGEAYITFGSRSEAERAITERNR 626
Query: 234 MTLGSRYIELF 244
+G+R++E+F
Sbjct: 627 KVIGNRFVEMF 637
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 10/102 (9%)
Query: 30 FYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGL-DIVDVLFV 88
+Y +PP S P AY YVSQ V ++GLPF+ D+ FF G+ ++ + V
Sbjct: 542 WYPSPPVS-----PQSAY-YVSQTQCPTTVVIKGLPFNVQVADILAFFEGIYEMQPDVQV 595
Query: 89 HK--NNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVF 127
+ + + TGEA+ G + + A+ +RNR+ +G R+VE+F
Sbjct: 596 QRGSDGRLTGEAYITFGSRSEAERAITERNRKVIGNRFVEMF 637
>gi|53127638|emb|CAG31148.1| hypothetical protein RCJMB04_2m14 [Gallus gallus]
Length = 492
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 32/221 (14%)
Query: 36 SSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-K 90
+S+ M N + GYV V++RGLP+ C+ +V FF I++ + F++ +
Sbjct: 28 TSNVMLNTESSEGYV--------VKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTR 79
Query: 91 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
+ +GEAF L V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 80 EGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN------ 133
Query: 151 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
S D D G +RLRGLPF K++I+ FF + + I + ++ GR
Sbjct: 134 --------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGR 180
Query: 211 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 181 STGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 221
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 102 KKDRETMGHRYVEVFKSNNVEMDWVL 127
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 146 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205
RG S HR + VH +RGLP+ A ++DI +FF L+ +HI +
Sbjct: 292 RGMSDHRYGDGTSTFQSTTGHCVH-----MRGLPYRATENDIYNFFSP--LNPVRVHIEI 344
Query: 206 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 345 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 386
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 313 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 372
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 373 ANMQHRYVELF 383
>gi|296196376|ref|XP_002745793.1| PREDICTED: G-rich sequence factor 1 [Callithrix jacchus]
Length = 479
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 112/231 (48%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH------------------------ 151
R+ +G RY+E+F S+R E + + SP
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSPTAKYITEPEMVFEEHEVNEDIRPMT 369
Query: 152 -----------RSIPRA--KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
+ +P ++ D G +H + +RGLPF A DI++FF
Sbjct: 370 AFESEKEIELPKEVPEKLPEAADFGTTPCLH--FVHMRGLPFQANAQDIINFFAPL---- 423
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 424 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 474
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 150 LIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 210 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKSSPVVNDGV 250
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 251 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 308
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 309 HREEIGNRYIEIFPSRRNEV 328
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
>gi|193784859|dbj|BAG54012.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 230 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 289
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D++ +
Sbjct: 290 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 349
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 350 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 403
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 404 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 454
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 96 YSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIR 155
Query: 84 D-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 156 NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 206
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS V+ G++RLRGLP+S + DI+DFF + +
Sbjct: 207 NNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 256
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 257 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 308
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 130 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 189
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 190 EKHRMYMGQRYVEVYEINNEDVD 212
>gi|349603147|gb|AEP99067.1| G-rich sequence factor 1-like protein, partial [Equus caballus]
Length = 361
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 119/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P AL ++
Sbjct: 132 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 191
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIANEVS------------------DVRGGS 149
R+ +G RY+E+F S+R E K +A+ ++ D+R +
Sbjct: 192 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMASSLTAKYITEPEMVFEEHEVNEDIRPMT 251
Query: 150 PHRS-----IPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 252 AFESEKEVELPKEMSEKLPETADFGTASSLH--FVHMRGLPFQANAQDIINFFAPL---- 305
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 306 KPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 356
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 34/228 (14%)
Query: 37 SSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIVD----- 84
++++ + PP Y P ++R +GLP+ CT DV FF I +
Sbjct: 4 TTYLEDLPPLPEYEVAPSKLGQDVDDVYLIRAQGLPWSCTIEDVLNFFSDCRIRNGENGI 63
Query: 85 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 144
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 64 HFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVD 114
Query: 145 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
KS V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 115 AL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 162
Query: 205 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 163 MDYRGRRKTGEAYVQFEEPEMASQALLKHREEIGNRYIEIFPSRRNEV 210
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 32 LIRAQGLPWSCTIEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 91
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 92 EKHRMYMGQRYVEVYEINNEDVD 114
>gi|326928641|ref|XP_003210484.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Meleagris gallopavo]
Length = 477
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 32/221 (14%)
Query: 36 SSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-K 90
+S+ M N + GYV V++RGLP+ C+ +V FF I++ + F++ +
Sbjct: 13 TSNVMLNTESSEGYV--------VKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTR 64
Query: 91 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
+ +GEAF L V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 65 EGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN------ 118
Query: 151 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
S D D G +RLRGLPF K++I+ FF + + I + ++ GR
Sbjct: 119 --------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGR 165
Query: 211 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 166 STGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 206
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 27 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 86
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 87 KKDRETMGHRYVEVFKSNNVEMDWVL 112
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 146 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205
RG S HR + VH +RGLP+ A ++DI +FF L+ +HI +
Sbjct: 277 RGMSDHRYGDGTSTFQSTTGHCVH-----MRGLPYRATENDIYNFFSP--LNPVRVHIEI 329
Query: 206 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 330 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 371
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 298 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 357
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 358 ANMQHRYVELF 368
>gi|426344574|ref|XP_004038836.1| PREDICTED: G-rich sequence factor 1 [Gorilla gorilla gorilla]
Length = 362
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D++ +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 252
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 253 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 306
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 307 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHIHHRYIELFLNS 357
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 34/228 (14%)
Query: 37 SSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIVD----- 84
++++ + PP Y P ++R +GLP+ CT DV FF I +
Sbjct: 5 TTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGI 64
Query: 85 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 144
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 65 HFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVD 115
Query: 145 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
KS V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 116 AL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 163
Query: 205 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 164 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|327265516|ref|XP_003217554.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Anolis
carolinensis]
Length = 490
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 32/224 (14%)
Query: 33 TPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFV 88
T +SS M N GYV V++RGLP+ C+ +V FF I++ V F+
Sbjct: 25 TTLTSSMMLNAEGGEGYV--------VKVRGLPWSCSADEVQRFFSECKILNGSSGVRFI 76
Query: 89 H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG 147
+ + + +GEAF L V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 77 YTREGRPSGEAFVELETEEDVKSALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--- 133
Query: 148 GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207
S D D G +RLRGLPF K++I+ FF + + I + ++
Sbjct: 134 -----------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDF 177
Query: 208 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 178 QGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 221
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF + + S + +GRP+GEAFVE ED K+A+
Sbjct: 42 VVKVRGLPWSCSADEVQRFFSECKILNGSSGVRFIYTREGRPSGEAFVELETEEDVKSAL 101
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 102 KKDRETMGHRYVEVFKSNNVEMDWVL 127
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Query: 146 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205
RG S HR + + VH +RGLP+ A ++DI +FF L+ +HI +
Sbjct: 292 RGISDHRYGDGSSTFQSTTGHCVH-----MRGLPYRATENDIYNFFSP--LNPVRVHIEI 344
Query: 206 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 345 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 386
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 313 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 372
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 373 ANMQHRYVELF 383
>gi|149193321|ref|NP_002083.3| G-rich sequence factor 1 isoform 1 [Homo sapiens]
Length = 480
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D++ +
Sbjct: 311 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 370
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 371 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 424
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 425 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 117 YSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIR 176
Query: 84 D-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 177 NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 227
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS V+ G++RLRGLP+S + DI+DFF + +
Sbjct: 228 NNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 277
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 278 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 329
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 211 EKHRMYMGQRYVEVYEINNEDVD 233
>gi|215274142|sp|Q12849.3|GRSF1_HUMAN RecName: Full=G-rich sequence factor 1; Short=GRSF-1
Length = 480
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 251 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 310
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D++ +
Sbjct: 311 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 370
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 371 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 424
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 425 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 475
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 117 YSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIR 176
Query: 84 D-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 177 NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 227
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS V+ G++RLRGLP+S + DI+DFF + +
Sbjct: 228 NNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 277
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 278 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 329
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 211 EKHRMYMGQRYVEVYEINNEDVD 233
>gi|221041252|dbj|BAH12303.1| unnamed protein product [Homo sapiens]
Length = 448
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 219 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 278
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D++ +
Sbjct: 279 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 338
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 339 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 392
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 393 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 443
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 85 YSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIR 144
Query: 84 D-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 145 NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 195
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS V+ G++RLRGLP+S + DI+DFF + +
Sbjct: 196 NNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 245
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 246 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 297
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 119 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 178
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 179 EKHRMYMGQRYVEVYEINNEDVD 201
>gi|45383173|ref|NP_989827.1| heterogeneous nuclear ribonucleoprotein H [Gallus gallus]
gi|33521618|gb|AAQ20009.1| heterogeneous nuclear ribonucleoprotein H1-like protein [Gallus
gallus]
Length = 519
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 32/221 (14%)
Query: 36 SSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-K 90
+S+ M N + GYV V++RGLP+ C+ +V FF I++ + F++ +
Sbjct: 48 TSNVMLNTESSEGYV--------VKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTR 99
Query: 91 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
+ +GEAF L V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 100 EGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN------ 153
Query: 151 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
S D D G +RLRGLPF K++I+ FF + + I + ++ GR
Sbjct: 154 --------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGR 200
Query: 211 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 201 STGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 241
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 62 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 121
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 122 KKDRETMGHRYVEVFKSNNVEMDWVL 147
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 340 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 397
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 398 DKANMQHRYVELFLNS 413
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 340 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 399
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 400 ANMQHRYVELF 410
>gi|351714959|gb|EHB17878.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 413
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 115/217 (52%), Gaps = 32/217 (14%)
Query: 40 MYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKF 94
M P GYV V+LRGLP+ C+ DV F I D V F++ + +
Sbjct: 1 MLGPEGGEGYV--------VKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQ 52
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
+GEAF L V AL+++R++MG RY+EVF+S R E + + S
Sbjct: 53 SGEAFVELESEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------SG 100
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
P S D D G +RLRGLPF K++I+ FF + + I + ++ +G+ TGE
Sbjct: 101 P--NSADTAND-----GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGE 153
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
AFV+FA+ E ++ A+ K + +G RYIE+F SS +E+
Sbjct: 154 AFVQFASQELAEKALRKHKERIGHRYIEVFKSSQQEV 190
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 11 VVKLRGLPWSCSIEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEDDVKMAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHRTEMDWVL 96
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AM+K
Sbjct: 288 CVHMRGLPYKATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEEAVPAMSK 345
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 346 DRANMQHRYIELFLNS 361
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ + V + + + + TGEA +
Sbjct: 279 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEE 338
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 339 AVPAMSKDRANMQHRYIELF 358
>gi|34533956|dbj|BAC86863.1| unnamed protein product [Homo sapiens]
Length = 447
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 218 VVRLRGLPYSCNEEDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 277
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D++ +
Sbjct: 278 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 337
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 338 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 391
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 392 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 442
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 112/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 84 YSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIR 143
Query: 84 D-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 144 NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 194
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS V+ G++RLRGLP+S ++DI+DFF + +
Sbjct: 195 NNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEEDIVDFFAGLNIVD 244
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 245 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 296
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 118 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 177
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 178 EKHRMYMGQRYVEVYEINNEDVD 200
>gi|21748975|dbj|BAC03513.1| unnamed protein product [Homo sapiens]
Length = 415
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 186 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 245
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D++ +
Sbjct: 246 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 305
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 306 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 359
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 360 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 410
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 52 YSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIR 111
Query: 84 D-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 112 NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 162
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS V+ G++RLRGLP+S + DI+DFF + +
Sbjct: 163 NNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 212
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 213 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 264
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 86 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 145
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 146 EKHRMYMGQRYVEVYEINNEDVD 168
>gi|395857260|ref|XP_003801023.1| PREDICTED: G-rich sequence factor 1 [Otolemur garnettii]
Length = 528
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 109/229 (47%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 299 VVRLRGLPYSCDEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 358
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + SP
Sbjct: 359 REEIGNRYIEIFPSRRNEVRTHVGAHKGKKIASSPMAKYITEPEMVFEEHEGNEDIRPMT 418
Query: 151 ----HRSIPRAKSHDEGKDSAVHTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E AV G + +RGLPF A DI++FF
Sbjct: 419 AFENEKEIELPKEMSEKLPEAVDFGATPSLHFVHMRGLPFQANAQDIINFFAPL----KP 474
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 475 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 523
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A +
Sbjct: 199 LIRAQGLPWSCTVEDVLAFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEXPAVRGR 258
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+R MG++YVEV+ I NE D KS AV+ G+
Sbjct: 259 FVHRMYMGQQYVEVYE---------INNEDVDAL----------MKSLQVKSPPAVNDGV 299
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 300 VRLRGLPYSCDEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 357
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 358 HREEIGNRYIEIFPSRRNEV 377
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +
Sbjct: 199 LIRAQGLPWSCTVEDVLAFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEXPAVRGR 258
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
RM +G +Y+E++ ++E++D
Sbjct: 259 FVHRMYMGQQYVEVYEINNEDVD 281
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 446 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 505
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 506 LKDRSHVHHRYIELF 520
>gi|390333349|ref|XP_003723691.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Strongylocentrotus purpuratus]
Length = 720
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 44 PPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFC 100
P Y P V+ RGLP+ ++ DV FF GL+I L ++ + + GE
Sbjct: 207 PGTYDKTDSIPDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLNTHGRRNGEVMV 266
Query: 101 VLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH 160
Q D ALQR++ N+G+RYVEVF++ E+ + A G S ++ A+
Sbjct: 267 HFESSEQRDMALQRHKHNLGKRYVEVFKATGDEFIRVAA-------GTSKEATLFLAR-- 317
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFV 217
DEG I+R+RGLPF+A + D++DFF + E+ I +G+ TG+AFV
Sbjct: 318 DEGHI------IVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFV 371
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
FA+ + A++K R LG+RYIE+F S+ E+ + LSR
Sbjct: 372 LFASEDAVSKALSKHREYLGNRYIEIFRSTTAEVQQVLSR 411
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 31/231 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI------VDVLFV-HKNNKFTGEAFCVLGYPLQVDF 110
+VR+RGLPF +E DV +FF G +I +LFV KN K TG+AF + V
Sbjct: 323 IVRMRGLPFTASEKDVVDFF-GPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASEDAVSK 381
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSI--------------- 154
AL ++R+ +G RY+E+FRS E + ++ S+ + P + +
Sbjct: 382 ALSKHREYLGNRYIEIFRSTTAEVQQVLSRVQSEPIMADIPQQQVMPPMIPIPIHAMPPH 441
Query: 155 PRAKSHDEGKDSAVHTGI----LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSD 208
+ + G+ +R+RGLP++A +DIM F + + +H+ +N
Sbjct: 442 HPHQPPPPPHPHFITAGVVRDCIRMRGLPYNASIEDIMLFLGEAAQFIRPHGVHMVLNLQ 501
Query: 209 GRPTGEAFVEFANAEDSKAAMAKDRMT-LGSRYIELFPSSHEEMDEALSRG 258
G+P GEAF++ +AE + A M + RY+E+F S EEM L+ G
Sbjct: 502 GKPNGEAFIQMTSAERACLAAQTCHMKYMRERYVEVFQCSGEEMQMVLTSG 552
>gi|221042436|dbj|BAH12895.1| unnamed protein product [Homo sapiens]
Length = 393
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 164 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 223
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D++ +
Sbjct: 224 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 283
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 284 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 337
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 338 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 388
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 64 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 123
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 124 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKSSPVVNDGV 164
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 165 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 222
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 223 HREEIGNRYIEIFPSRRNEV 242
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 64 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 123
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 124 EKHRMYMGQRYVEVYEINNEDVD 146
>gi|405968884|gb|EKC33911.1| Epithelial splicing regulatory protein 2 [Crassostrea gigas]
Length = 727
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 110/208 (52%), Gaps = 24/208 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L + + GEA L D AL+R
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGVALCLSPQGRRNGEALVRLENEQNRDLALKR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G+RY+EV YKA + +V GGS S + S I+R
Sbjct: 285 HKHHIGQRYIEV--------YKATGKDFVNVAGGS--------NSEAQAFLSRGGQVIIR 328
Query: 175 LRGLPFSAGKDDIMDFFK-----DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+RGLPF+A +++FF + E+ I DGR TG+AFV A+ ED+ +A+
Sbjct: 329 MRGLPFTATAQQVLEFFAREPSVSVLDGEEGILFVHYPDGRSTGDAFVLLASEEDAVSAL 388
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
K R +G+RYIELF S+ E+ + L+R
Sbjct: 389 KKHREIMGTRYIELFKSTTAEVQQVLNR 416
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 32/230 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH---GLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVD 109
++R+RGLPF T V EFF + ++D +LFVH + + TG+AF +L
Sbjct: 326 IIRMRGLPFTATAQQVLEFFAREPSVSVLDGEEGILFVHYPDGRSTGDAFVLLASEEDAV 385
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS-IPRAKSHDEGK---- 164
AL+++R+ MG RY+E+F+S E + + N D R P + +P + +
Sbjct: 386 SALKKHREIMGTRYIELFKSTTAEV-QQVLNRSMDPRNPEPQETPLPAILTQLTPQSQLP 444
Query: 165 ---DSAVHTG----ILRLRGLPFSAGKDDIMDF---FKDFVLSEDSIHITMNSDGRPTGE 214
S + +G +RLR +P A DI+ F F F++ + +H+ + G P+GE
Sbjct: 445 YIPQSLITSGTRRDCIRLRNIPGGAQVTDILTFLGEFSQFIIFQ-GVHMVYTAQGEPSGE 503
Query: 215 AFVEFANAEDSKAAMAKDR------MTLGSRYIELFPSSHEEMDEALSRG 258
AF++ ++E+S A +R R I++ S E+M+ L+ G
Sbjct: 504 AFIQM-DSEESAQLTAINRNKRPIVFAQKKRIIDVIQCSGEDMNLVLTNG 552
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R RGLP+ + DI FFK +++ + + ++ GR GEA V N ++ A+ +
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGVALCLSPQGRRNGEALVRLENEQNRDLALKR 284
Query: 232 DRMTLGSRYIELFPS-----------SHEEMDEALSRG 258
+ +G RYIE++ + S+ E LSRG
Sbjct: 285 HKHHIGQRYIEVYKATGKDFVNVAGGSNSEAQAFLSRG 322
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 167 AVHTG---ILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNSDGRPTGEAFVEFANA 222
HTG ++ +RGLP +A DI++FF+ F ++ ++I I + DGR TG+A + F
Sbjct: 643 VTHTGPPTLVVMRGLPVNAQVQDILNFFQGFPEVTPENIQIQILPDGRLTGDALISFMTR 702
Query: 223 EDSKAAMA-KDRMTLGSRYIELF 244
+++ A+A + + T+G IELF
Sbjct: 703 SEAERAIATRGKQTMGQCLIELF 725
>gi|397475207|ref|XP_003809035.1| PREDICTED: G-rich sequence factor 1 [Pan paniscus]
Length = 362
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D++ +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 252
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 253 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 306
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 307 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 93 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKSSPVVNDGV 133
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 134 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 191
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 192 HREEIGNRYIEIFPSRRNEV 211
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|72092573|ref|XP_792820.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Strongylocentrotus purpuratus]
Length = 752
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 21/220 (9%)
Query: 44 PPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFC 100
P Y P V+ RGLP+ ++ DV FF GL+I L ++ + + GE
Sbjct: 207 PGTYDKTDSIPDDTAVKARGLPWQASDRDVFRFFKGLNIARGGVALCLNTHGRRNGEVMV 266
Query: 101 VLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH 160
Q D ALQR++ N+G+RYVEVF++ E+ + A G S ++ A+
Sbjct: 267 HFESSEQRDMALQRHKHNLGKRYVEVFKATGDEFIRVAA-------GTSKEATLFLAR-- 317
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFV 217
DEG I+R+RGLPF+A + D++DFF + E+ I +G+ TG+AFV
Sbjct: 318 DEGHI------IVRMRGLPFTASEKDVVDFFGPEIPVAGGEEGILFVKQKNGKMTGDAFV 371
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
FA+ + A++K R LG+RYIE+F S+ E+ + LSR
Sbjct: 372 LFASEDAVSKALSKHREYLGNRYIEIFRSTTAEVQQVLSR 411
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 31/231 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI------VDVLFV-HKNNKFTGEAFCVLGYPLQVDF 110
+VR+RGLPF +E DV +FF G +I +LFV KN K TG+AF + V
Sbjct: 323 IVRMRGLPFTASEKDVVDFF-GPEIPVAGGEEGILFVKQKNGKMTGDAFVLFASEDAVSK 381
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSI--------------- 154
AL ++R+ +G RY+E+FRS E + ++ S+ + P + +
Sbjct: 382 ALSKHREYLGNRYIEIFRSTTAEVQQVLSRVQSEPIMADIPQQQVMPPMIPIPIHAMPPH 441
Query: 155 PRAKSHDEGKDSAVHTGI----LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSD 208
+ + G+ +R+RGLP++A +DIM F + + +H+ +N
Sbjct: 442 HPHQPPPPPHPHFITAGVVRDCIRMRGLPYNASIEDIMLFLGEAAQFIRPHGVHMVLNLQ 501
Query: 209 GRPTGEAFVEFANAEDSKAAMAKDRMT-LGSRYIELFPSSHEEMDEALSRG 258
G+P GEAF++ +AE + A M + RY+E+F S EEM L+ G
Sbjct: 502 GKPNGEAFIQMTSAERACLAAQTCHMKYMRERYVEVFQCSGEEMQMVLTSG 552
>gi|355749346|gb|EHH53745.1| hypothetical protein EGM_14439, partial [Macaca fascicularis]
Length = 362
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 119/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIA-------------------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E + +EV+ D+R +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKITSSPTAKYITEPEMVFEEHEVNEDIRPMT 252
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S+ H + +RGLPF A DI++FF
Sbjct: 253 AFESEKEIELPKEVPEKLPEAADFGTTSSQH--FVHMRGLPFQANAQDIINFFAPL---- 306
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 307 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 34/228 (14%)
Query: 37 SSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIVD----- 84
++++ + PP Y P ++R +GLP+ CT DV FF I +
Sbjct: 5 TTYLEDLPPPPEYELAPSKLEEEVDDVYLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGI 64
Query: 85 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 144
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 65 HFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVD 115
Query: 145 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
KS V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 116 AL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 163
Query: 205 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 164 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 211
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|193786243|dbj|BAG51526.1| unnamed protein product [Homo sapiens]
Length = 412
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 183 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 242
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D++ +
Sbjct: 243 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 302
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 303 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 356
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 357 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 407
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 49 YSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIR 108
Query: 84 D-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 109 NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 159
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS V+ G++RLRGLP+S + DI+DFF + +
Sbjct: 160 NNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 209
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 210 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 261
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 83 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 142
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 143 EKHRMYMGQRYVEVYEINNEDVD 165
>gi|410227596|gb|JAA11017.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410268188|gb|JAA22060.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410306352|gb|JAA31776.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410306354|gb|JAA31777.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410360388|gb|JAA44703.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
gi|410360390|gb|JAA44704.1| G-rich RNA sequence binding factor 1 [Pan troglodytes]
Length = 481
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 311
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIAN-----------------EVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA+ EV+ D++ +
Sbjct: 312 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 371
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 372 AFESEKEIELPKEVPEKLPEAADFGTASSLH--FVHMRGLPFQANAQDIINFFAPL---- 425
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 426 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 476
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 152 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 212 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKSSPVVNDGV 252
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 253 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 310
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 311 HREEIGNRYIEIFPSRRNEV 330
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 152 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 212 EKHRMYMGQRYVEVYEINNEDVD 234
>gi|441626116|ref|XP_003265953.2| PREDICTED: G-rich sequence factor 1 [Nomascus leucogenys]
Length = 539
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 120/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 310 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 369
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIAN-------------------------EVS-DVRGGS 149
R+ +G RY+E+F S+R E + + EV+ D++ +
Sbjct: 370 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKITSFPTAKYITEPEMVFEEHEVNEDIQPMT 429
Query: 150 PHRS-----IPR------AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 430 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHVRGLPFQANAQDIINFFAPL---- 483
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 484 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 534
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 22/166 (13%)
Query: 87 FVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR 146
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 244 LLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDAL 294
Query: 147 GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206
KS + V+ G++RLRGLP+S + DI+DFF + + I M+
Sbjct: 295 ----------MKSLEVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMD 342
Query: 207 SDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 343 YRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 388
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRL + F +D + ++ E+ IH +N DG+ G+A +E + +D + A+ K
Sbjct: 215 CLRLLDVQFKPKQDGLDCRIRN---GENGIHFLLNRDGKRRGDALIEMESEQDVQKALEK 271
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
RM +G RY+E++ ++E++D +
Sbjct: 272 HRMYMGQRYVEVYEINNEDVDALM 295
>gi|354495968|ref|XP_003510100.1| PREDICTED: G-rich sequence factor 1-like [Cricetulus griseus]
Length = 457
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 110/229 (48%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 228 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 287
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + + SP
Sbjct: 288 REEIGNRYIEIFPSRRNEVRTHVGSHKAKKMVSSPTAKYITEPEVVFEEHEVNEDIRPMT 347
Query: 151 ----HRSIPRAKSHDEGKDSAVHTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E V G + +RGLPF A DI++FF
Sbjct: 348 AFESDKEIELPKEMSEKLPETVDFGSMPSLHFVHMRGLPFQANAQDIINFFAPL----KP 403
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 404 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 452
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 124/273 (45%), Gaps = 64/273 (23%)
Query: 21 QRLIDQ---GPSFYGTPP-----SSSFMYNPPPAYG----------YVSQPPPFP----- 57
QRL Q P+ TPP + PPP +G Y+ PP P
Sbjct: 56 QRLSSQPVRTPTGQATPPPGRSPGGAARSLPPPRFGVSPGKDSKTTYLEDLPPLPEYELS 115
Query: 58 ------------VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFC 100
++R +GLP+ CT DV FF I + ++++ K G+A
Sbjct: 116 PSKLGQEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALI 175
Query: 101 VLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RSIPRAKS 159
+ V AL+++R MG+RYVEV+ I NE D S H +S P
Sbjct: 176 EMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDALMKSLHVKSSP---- 222
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVE 218
V+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+
Sbjct: 223 -------MVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQ 273
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
F E + A+ K R +G+RYIE+FPS E+
Sbjct: 274 FEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 306
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 128 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 187
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 188 EKHRMYMGQRYVEVYEINNEDVD 210
Score = 37.0 bits (84), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 375 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 434
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 435 LKDRSHVQHRYIELF 449
>gi|346465413|gb|AEO32551.1| hypothetical protein [Amblyomma maculatum]
Length = 434
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 123/241 (51%), Gaps = 36/241 (14%)
Query: 26 QGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFH------- 78
+G G P S + M P G+V +R+RGLP+ T+ ++ FF
Sbjct: 10 EGDLLLGLPLSYNKMTAPVDDEGFV--------LRIRGLPWSTTKEEILNFFTSKECHIK 61
Query: 79 -GLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 137
G++ V + + + + +GEA+ L V+ LQR+ +++G RY+EVF+SKR E
Sbjct: 62 GGINGVH-MTLSREGRPSGEAYIELESEQDVEIGLQRHNEHIGHRYIEVFKSKRSEMDWV 120
Query: 138 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 197
+ R+ +H + +++ G +RLRGLPF K++I FF +
Sbjct: 121 VK----------------RSGAHQQ---DSLNDGCVRLRGLPFGCSKEEIAQFFSGLEIV 161
Query: 198 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ I + + GR TGEAFV+FA + ++ AM K + +G RYIE+F SS +E+ A+
Sbjct: 162 PNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVGM 221
Query: 258 G 258
G
Sbjct: 222 G 222
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 39/227 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++A+FF GL+IV L + TGEAF + A+ +
Sbjct: 136 CVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGK 195
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDV----------------------------R 146
+++ +G RY+E+F+S QE A+ V + R
Sbjct: 196 HKEKIGHRYIEIFKSSLQEIRSAVGMGVPKMMRPMGTGRPGPYDRVERFGGGPSRYGMGR 255
Query: 147 GGSPHRSIPRAKSHDE--GKDSAVH---TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDS 200
GG R + + G H TG + +RGLPF A + DI +FF+ ++ +
Sbjct: 256 GGRNFRGFVEEDGYGDFGGSVGGSHFSATGHFVHMRGLPFRATERDIFEFFQP--MNPVN 313
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+H GRP+GE VEFA E++ AM+KD+ + RYIELF +S
Sbjct: 314 VHFIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRYIELFLNS 360
>gi|149193319|ref|NP_001091947.1| G-rich sequence factor 1 isoform 2 [Homo sapiens]
gi|119626036|gb|EAX05631.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|119626037|gb|EAX05632.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|119626038|gb|EAX05633.1| G-rich RNA sequence binding factor 1, isoform CRA_a [Homo sapiens]
gi|193786999|dbj|BAG51822.1| unnamed protein product [Homo sapiens]
gi|193787731|dbj|BAG52934.1| unnamed protein product [Homo sapiens]
gi|193788237|dbj|BAG53131.1| unnamed protein product [Homo sapiens]
gi|193788520|dbj|BAG53414.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 122/231 (52%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 89 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 148
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D++ +
Sbjct: 149 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 208
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 209 AFESEKEIELPKEVPEKLPEAADFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 262
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 263 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHRYIELFLNS 313
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 22/167 (13%)
Query: 86 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 145
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 22 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 72
Query: 146 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205
KS V+ G++RLRGLP+S + DI+DFF + + I M
Sbjct: 73 L----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVM 120
Query: 206 NSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 121 DYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 167
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 185 DDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
+D+++FF D + E+ IH +N DG+ G+A +E + +D + A+ K RM +G RY+E
Sbjct: 2 EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 61
Query: 243 LFPSSHEEMD 252
++ ++E++D
Sbjct: 62 VYEINNEDVD 71
>gi|345793292|ref|XP_544182.3| PREDICTED: epithelial splicing regulatory protein 1 [Canis lupus
familiaris]
Length = 764
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 309 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 368
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K ++V + K++ V I+R
Sbjct: 369 HKHHMGTRYIEVYKATGEDFLKIAGGTSNEV-------------AQFLSKENQV---IVR 412
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 413 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 472
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 473 HKDLLGKRYIELFRSTAAEVQQVLNR 498
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 410 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 469
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 470 LRKHKDLLGKRYIELFRSTAAEVQQVL-NRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 528
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 529 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 578
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 579 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 618
>gi|147907062|ref|NP_001079993.1| RNA binding motif protein 12 [Xenopus laevis]
gi|37589430|gb|AAH59291.1| Rbm12-prov protein [Xenopus laevis]
Length = 877
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 28/226 (12%)
Query: 52 QPPPF----PVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPL 106
+PPP P V L GLP +E D+ E FHGL I V+ + G A L P
Sbjct: 295 KPPPLNHDDPYVCLHGLPLPVSEADIKELFHGLRIDGIVILTDPMGRHNGSALVKLITPH 354
Query: 107 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD----------------VRGGSP 150
AL+RNR MG+R++EV + +++ + + R SP
Sbjct: 355 DTFEALKRNRMLMGQRFIEVSPATERQWIVNGGHMLKQQNVGHHGPPPLMQQLITRSKSP 414
Query: 151 H-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209
+ +S PR++S E H + L+GLP+ A ++DFFK + EDSI+I S+G
Sbjct: 415 NPQSRPRSRSPHE------HGFCVYLKGLPYEAENKHVIDFFKKLNIVEDSIYIAYGSNG 468
Query: 210 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+ TGE F+EF N ED K+A+ + + +G+R++++ P + + M E +
Sbjct: 469 KATGEGFLEFRNEEDYKSALCRHKQYMGNRFVQVHPITKKAMLEKI 514
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 23/209 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLP++ V +FF L+IV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPYEAENKHVIDFFKKLNIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV------ 168
++Q MG R+V+V + KA+ ++ + H+ + ++ ++ E KD+ +
Sbjct: 491 HKQYMGNRFVQVHPITK----KAMLEKIDMI-----HKKM-QSYNYGEHKDAPLDAEFDK 540
Query: 169 HTGIL--RLRGLPFSAGKDDIMDFF--KDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
H L L LP+S + DI FF + F + E+ + + +++G+ G+A V+F + +D
Sbjct: 541 HGPRLWGHLSNLPYSIMRKDISHFFISEGFAIDENFVQLLTDNNGQCIGQALVQFRSEDD 600
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
++ + R L R + L + EE ++
Sbjct: 601 ARKSERLHRKKLNGRDVFLHIVNAEERND 629
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVSLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R++ +PF+ D+I+DFF + L S+ + + G PTGEA V F + +++ AA+
Sbjct: 802 VIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAVVD 861
Query: 232 -DRMTLGSRYIEL 243
+ +GSR ++L
Sbjct: 862 LNERPIGSRKVKL 874
>gi|426231834|ref|XP_004009942.1| PREDICTED: G-rich sequence factor 1 [Ovis aries]
Length = 362
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 118/231 (51%), Gaps = 47/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P AL ++
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 192
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIA-----------------NEVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA +EV+ D+R +
Sbjct: 193 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEVVFEEHEVNEDIRPMT 252
Query: 150 PHRSIPRAKSHDE-----------GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +S E G S++H + +RGLPF A DI++FF
Sbjct: 253 AFESEKEIESPKEMSEKLPEAVDFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 306
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 307 KPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVHHRYIELFLNS 357
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 29/201 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RSIPRAKSHDEGKDSAVHTG 171
+++R MG+RYVEV+ I NE D S H +S P V+ G
Sbjct: 93 EKHRMYMGQRYVEVYE---------INNEDVDALMKSLHVKSAP-----------VVNDG 132
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMA 230
++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+
Sbjct: 133 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMASQALL 190
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K R +G+RYIE+FPS E+
Sbjct: 191 KHREEIGNRYIEIFPSRRNEV 211
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 33 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 92
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 93 EKHRMYMGQRYVEVYEINNEDVD 115
>gi|26346715|dbj|BAC37006.1| unnamed protein product [Mus musculus]
Length = 479
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 109/229 (47%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRL GLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 250 VVRLTGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMT 369
Query: 151 ----HRSIPRAKSHDEGKDSAVHTGIL------RLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E AV G L +RGLPF A DI++FF
Sbjct: 370 AFESDKEIELPKEMSEKLPEAVDFGTLPSLHFVHMRGLPFQANAQDIINFFAPL----KP 425
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 426 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 116 YSQESKTTYLEDLPPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIR 175
Query: 84 DV-----LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 176 NSENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 226
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS + G++RL GLP+S + DI+DFF + +
Sbjct: 227 NNEDVDAL----------MKSLQVKPSPVLSDGVVRLTGLPYSCNEKDIVDFFAGLNIVD 276
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 277 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
Score = 37.4 bits (85), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 457 LKDRSHVQHRYIELF 471
>gi|359063387|ref|XP_002685850.2| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus]
Length = 1157
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ + D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSLDQDIARFFKGLNIAKGGAALCLNAQGQRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K ++V + K++ V I+R
Sbjct: 286 HKHHMGSRYIEVYKATGEDFLKIAGGTSNEV-------------AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVL-NRFSSAPLIPLPTPPIIPVLPQQFVPPTNIRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP+ A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ +F HG+ +V ++ + +G+AF + +
Sbjct: 446 CIRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMV----LNHQGRPSGDAFIQMKSADRA 501
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
A Q+ +++ M RYVEVF+ +E + + G SP
Sbjct: 502 FMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
>gi|403281341|ref|XP_003945266.1| PREDICTED: LOW QUALITY PROTEIN: G-rich sequence factor 1 [Saimiri
boliviensis boliviensis]
Length = 439
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 109/197 (55%), Gaps = 21/197 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 252 VVRLRGLPYSCNEKDIIDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 311
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP-HRSIPRA--KSHDEGKDSAVHTGI 172
R+ +G R V+ R+ +Y D++ G + +P ++ D G +H
Sbjct: 312 REEIGNRXVKQILMMRKCHY--------DLKSGEKLPKEVPEKLPEAADFGTTPCLH--F 361
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAMA 230
+ +RGLPF A DI++FF + ITM +S G+ TGEA V F ED+ AAM
Sbjct: 362 VHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFETHEDAVAAML 417
Query: 231 KDRMTLGSRYIELFPSS 247
KDR + RYIELF +S
Sbjct: 418 KDRSHVHHRYIELFLNS 434
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 27/191 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 152 LIRAQGLPWSCTIEDVLNFFSDCRIRNGQNGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 212 EKHRLYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKSSPVVNDGV 252
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG-RPTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ G R TGEA+V+F E + A+ K
Sbjct: 253 VRLRGLPYSCNEKDIIDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 310
Query: 232 DRMTLGSRYIE 242
R +G+R ++
Sbjct: 311 HREEIGNRXVK 321
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + ++ IH +N DG+ G+A +E + +D + A+
Sbjct: 152 LIRAQGLPWSCTIEDVLNFFSDCRIRNGQNGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
K R+ +G RY+E++ ++E++D +
Sbjct: 212 EKHRLYMGQRYVEVYEINNEDVDALM 237
>gi|148707962|gb|EDL39909.1| mCG129396 [Mus musculus]
Length = 415
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 109/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + +GEAF L V AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGSQSGEAFVELESEDDVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG Y+EVF+S R E + + S DSA + G
Sbjct: 72 KKDRESMGHPYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS EE+
Sbjct: 173 KERIGHRYIEVFKSSQEEV 191
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLP+ A ++DI +FF F + +HI + DGR TGEA VEFA E++ AAM+KD
Sbjct: 291 VHMRGLPYKATENDIYNFFSPF--NPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKD 348
Query: 233 RMTLGSRYIELFPSS 247
R + RYIELF +S
Sbjct: 349 RANMQHRYIELFLNS 363
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +G +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGSQSGEAFVELESEDDVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G YIE+F S EMD L
Sbjct: 72 KKDRESMGHPYIEVFKSHRTEMDWVL 97
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLP+ TE D+ FF + V V + + + + TGEA + A+ ++R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPFNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 351 NMQHRYIELF 360
>gi|281427145|ref|NP_001094360.1| G-rich RNA sequence binding factor 1 [Rattus norvegicus]
Length = 479
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 110/229 (48%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 250 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 309
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 310 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMVSSPTTKYITEPEVVFEEHEVNEDARPMT 369
Query: 151 ----HRSIPRAKSHDEGKDSAVHTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K + AV G + +RGLPF A DI++FF
Sbjct: 370 AFESEKEIELPKEMSDKLAEAVDFGAVPSLHFVHMRGLPFQANAQDIINFFAPL----KP 425
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 426 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 474
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 116 YCQESKTTYLEDLPPLPEYELSPSKLGEEVDDVYLIRAQGLPWSCTVEDVLSFFSDCRIR 175
Query: 84 DV-----LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 176 NSENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 226
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS A+ G++RLRGLP+S + DI+DFF + +
Sbjct: 227 NNEDVDAL----------MKSLQVKPTPALSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 276
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 277 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 328
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + SE+ IH +N DG+ G+A +E + +D + A+
Sbjct: 150 LIRAQGLPWSCTVEDVLSFFSDCRIRNSENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 209
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 210 EKHRMYMGQRYVEVYEINNEDVD 232
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 397 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 456
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 457 LKDRSHVQHRYIELF 471
>gi|148667170|gb|EDK99586.1| mCG133010, isoform CRA_c [Mus musculus]
Length = 187
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 112/214 (52%), Gaps = 32/214 (14%)
Query: 39 FMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNK 93
M P GYV V+LRGLP+ C+ DV F I D V F++ + +
Sbjct: 1 MMLGPEGGEGYV--------VKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGR 52
Query: 94 FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 153
+GEAF L V AL+++R++MG RY+EVF+S R E + +
Sbjct: 53 QSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------- 99
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S DSA + G +RLRGLPF K++I+ FF + + I + ++ +G+ TG
Sbjct: 100 -----SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITG 153
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
EAFV+FA+ E ++ A+ K + +G RYIE+F SS
Sbjct: 154 EAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 187
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
>gi|324507711|gb|ADY43264.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 435
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 117/242 (48%), Gaps = 54/242 (22%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNR 116
VVRLRG+PF T D+ EFF GLD+ DV+ + + +GEAF L + AL+RN+
Sbjct: 112 VVRLRGIPFSATVADIKEFFSGLDVADVVIDKEPGGRPSGEAFVRLANKQHAEMALERNK 171
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRG----------------------------- 147
+NMG RYVEVFRS +E A + RG
Sbjct: 172 KNMGTRYVEVFRSSGEEMENAQYTTAASRRGMFPAPRGEPIPLRGLMAAGGYRDRYGYGA 231
Query: 148 GSPHRS-----------IP----------RAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 186
G P R+ +P ++ D V T + +RGLP++A D
Sbjct: 232 GGPMRAPMGRGRPGPYDVPYDRFSRYGGGFGGYEEDVLDYDVSTKVY-MRGLPYNANALD 290
Query: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246
I DFFK E I + N D RP+G+A+V F+ +++ A+++++ ++G+RYIELF
Sbjct: 291 IEDFFKPLNCVE--IRLGYNEDRRPSGDAYVLFSTMAEARDALSRNKKSIGTRYIELFSG 348
Query: 247 SH 248
++
Sbjct: 349 AN 350
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 15/201 (7%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQ 113
P VRLRGLPF E DV F GL + V F + + +GE + L V+ A +
Sbjct: 6 PSNYVRLRGLPFSAKEDDVRNFLQGLYVRSVTFTLTATGRASGECYVELTDAAAVEEAKK 65
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
+++ M RY+EVF E I H I A S+ ++ + ++
Sbjct: 66 FDKKEMSSRYIEVFSVSESEVSWMIR-----------HGVIKSADSNGTSTGTS-NNYVV 113
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
RLRG+PFSA DI +FF +++ + I GRP+GEAFV AN + ++ A+ +++
Sbjct: 114 RLRGIPFSATVADIKEFFSGLDVAD--VVIDKEPGGRPSGEAFVRLANKQHAEMALERNK 171
Query: 234 MTLGSRYIELFPSSHEEMDEA 254
+G+RY+E+F SS EEM+ A
Sbjct: 172 KNMGTRYVEVFRSSGEEMENA 192
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPFSA +DD+ +F + + S+ T+ + GR +GE +VE +A + A D
Sbjct: 10 VRLRGLPFSAKEDDVRNFLQGLYVR--SVTFTLTATGRASGECYVELTDAAAVEEAKKFD 67
Query: 233 RMTLGSRYIELFPSSHEEMDEALSRG 258
+ + SRYIE+F S E+ + G
Sbjct: 68 KKEMSSRYIEVFSVSESEVSWMIRHG 93
>gi|426236209|ref|XP_004012064.1| PREDICTED: epithelial splicing regulatory protein 1 [Ovis aries]
Length = 761
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 310 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 369
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 370 HKHHMGSRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 413
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 414 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 473
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 474 HKDLLGKRYIELFRSTAAEVQQVLNR 499
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 411 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 470
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 471 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIRD 529
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 530 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 579
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 580 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 619
>gi|224064269|ref|XP_002191895.1| PREDICTED: epithelial splicing regulatory protein 2 [Taeniopygia
guttata]
Length = 702
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA Q D AL+R
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNSQGRRNGEALVRFVNSEQRDLALER 286
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + + K++ V I+R
Sbjct: 287 HKHHMGSRYIEVYKATGEEFLK--------IAGGTSNEV-----AQFLSKENQV---IIR 330
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++D++ F ++ + DGRPTG+AFV F+ E ++ A+ K
Sbjct: 331 MRGLPFTATQEDVLGFLGSECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNALKK 390
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 391 HKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 108/210 (51%), Gaps = 9/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T+ DV F V +LFV + + + TG+AF + A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGSECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+++++ +G+RY+E+FRS E + + +S + I +
Sbjct: 388 LKKHKEILGKRYIELFRSTAAEVQQVLNRYMSTPLIPTLPTPIIPVIPPPYTIATGSIRD 447
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++AG DDI++F D + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 448 CVRLRGLPYTAGIDDILEFMGDATGDIKPHGVHMVLNQQGRPSGDAFIQMKSADKAFMVA 507
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + RY+E+F S EEM+ L G
Sbjct: 508 QKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 537
>gi|149033731|gb|EDL88527.1| G-rich RNA sequence binding factor 1 [Rattus norvegicus]
Length = 281
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 110/229 (48%), Gaps = 43/229 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 52 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 111
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 112 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKMVSSPTTKYITEPEVVFEEHEVNEDARPMT 171
Query: 151 ----HRSIPRAKSHDEGKDSAVHTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K + AV G + +RGLPF A DI++FF
Sbjct: 172 AFESEKEIELPKEMSDKLAEAVDFGAVPSLHFVHMRGLPFQANAQDIINFFAPL----KP 227
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ ITM +S G+ TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 228 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRYIELFLNS 276
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 76/145 (52%), Gaps = 22/145 (15%)
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
V AL+++R MG+RYVEV+ I NE D KS A
Sbjct: 7 VQKALEKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKPTPA 47
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSK 226
+ G++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E +
Sbjct: 48 LSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMAN 105
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K R +G+RYIE+FPS E+
Sbjct: 106 QALLKHREEIGNRYIEIFPSRRNEV 130
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 199 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 258
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 259 LKDRSHVQHRYIELF 273
>gi|346473523|gb|AEO36606.1| hypothetical protein [Amblyomma maculatum]
Length = 412
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 113/209 (54%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH--------GLDIVDVLFVHKNNKFTGEAFCVLGYPLQVD 109
V+R+RGLP+ T+ ++ FF G++ V + + + + +GEA+ L V+
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECNIKGGINGVH-MTLSREGRPSGEAYIELESEQDVE 69
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
LQR+ +++G RY+EVF+SKR E + R+ +H + +++
Sbjct: 70 VGLQRHNEHIGHRYIEVFKSKRSEMDWVVK----------------RSGAHQQ---DSLN 110
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
G +RLRGLPF K++I FF + + I + + GR TGEAFV+FA + ++ AM
Sbjct: 111 DGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAM 170
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
K + +G RYIE+F SS +E+ A+ G
Sbjct: 171 GKHKEKIGHRYIEIFKSSLQEVRSAIGMG 199
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 113/227 (49%), Gaps = 39/227 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++A+FF GL+IV L + TGEAF + A+ +
Sbjct: 113 CVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGK 172
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEV-----------------SDVRGGSPHR-SIPR 156
+++ +G RY+E+F+S QE AI V +D GG P R + R
Sbjct: 173 HKEKIGHRYIEIFKSSLQEVRSAIGMGVPKMMRPMGGARPGPYDRADRFGGGPSRYGMGR 232
Query: 157 AKSHDEG------------KDSAVH---TG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ G H TG + +RGLPF A + DI +FF+ ++ +
Sbjct: 233 GGRNFRGFVEEDGYGGFGGPGGGAHFSATGHFVHMRGLPFRATERDIFEFFQP--MNPVN 290
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+H+ GRP+GE VEFA E++ AM+KD+ + RYIELF +S
Sbjct: 291 VHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRYIELFLNS 337
>gi|428170681|gb|EKX39604.1| hypothetical protein GUITHDRAFT_54250, partial [Guillardia theta
CCMP2712]
Length = 186
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 100/199 (50%), Gaps = 25/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
+ R+RGLP+ D+ EFF G I ++ + H + GEAF AL
Sbjct: 1 IARVRGLPYSAATADIEEFFKGCAILKDGINFVLSH-GGRPAGEAFVTFETENDCRRALM 59
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR-----GGSPHRSIPRAKSHDEGKDSAV 168
R+R M +RYVEV+ S E + AI + VS + GG P S
Sbjct: 60 RDRDLMNKRYVEVYPSSEDEKHVAITSAVSYAQDDQSSGGDP---------------STS 104
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+ G+++LRGLP+S DDI FF + ED I I +N + R GEAFVEF + A
Sbjct: 105 YKGVVKLRGLPYSITADDIRSFFGHLSIKEDGIIICLNRERRNNGEAFVEFTDEYVVDEA 164
Query: 229 MAKDRMTLGSRYIELFPSS 247
+ KDR +GSRY+E+F SS
Sbjct: 165 VKKDRQMIGSRYVEVFRSS 183
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I R+RGLP+SA DI +FFK + +D I+ ++ GRP GEAFV F D + A+ +
Sbjct: 1 IARVRGLPYSAATADIEEFFKGCAILKDGINFVLSHGGRPAGEAFVTFETENDCRRALMR 60
Query: 232 DRMTLGSRYIELFPSSHEEMDEALS 256
DR + RY+E++PSS +E A++
Sbjct: 61 DRDLMNKRYVEVYPSSEDEKHVAIT 85
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VV+LRGLP+ T D+ FF L I + ++ +++ + GEAF VD A+++
Sbjct: 108 VVKLRGLPYSITADDIRSFFGHLSIKEDGIIICLNRERRNNGEAFVEFTDEYVVDEAVKK 167
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+RQ +G RYVEVFRS + +
Sbjct: 168 DRQMIGSRYVEVFRSSKAD 186
>gi|335286312|ref|XP_003125612.2| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
[Sus scrofa]
Length = 681
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 10/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + N S +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVTPTNVRD 445
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ T+ RY+E+F S EEM+ L G
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|301606650|ref|XP_002932936.1| PREDICTED: RNA-binding protein 12 [Xenopus (Silurana) tropicalis]
Length = 880
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 30/227 (13%)
Query: 52 QPPPF----PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN--NKFTGEAFCVLGYP 105
+PPP P V L GLP +E D+ +FFHGL I D + V K+ + G A L P
Sbjct: 298 KPPPLNHDDPYVCLHGLPVPVSEADIKDFFHGLRI-DGIVVLKDPMGRHNGSALVKLITP 356
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD----------------VRGGS 149
AL+RNR +G+R++EV + +++ + + + R S
Sbjct: 357 HDTFEALKRNRMLLGQRFIEVSPATERQWMVSAGHILKPQNVGHHGPPPLMQQLITRSKS 416
Query: 150 PH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 208
P +S PR++S E H + L+GLP+ A ++DFFK + EDSI+I S+
Sbjct: 417 PSTQSRPRSRSPHE------HGFCVYLKGLPYEAENKHVIDFFKKLDIVEDSIYIAYGSN 470
Query: 209 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
G+ TGE F+EF N ED K+A+ + + +G+R++++ P + + M E +
Sbjct: 471 GKATGEGFLEFRNEEDYKSALCRHKQYMGNRFVQVHPITKKAMLEKI 517
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 15/202 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLP++ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 434 CVYLKGLPYEAENKHVIDFFKKLDIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCR 493
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++Q MG R+V+V + KA+ ++ +R +S ++ D D+ R
Sbjct: 494 HKQYMGNRFVQVHPITK----KAMLEKIDMIR--KKMQSYNYSEHKDAPLDAEFEKHGPR 547
Query: 175 LRG----LPFSAGKDDIMDFF--KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
L G LP+S + DI FF + F + E+ + + ++++G+ G+A V+F + +D++ +
Sbjct: 548 LWGHLSNLPYSIMRKDISHFFISEGFAIDENFVQLLVDNNGQCIGQALVQFRSEDDARKS 607
Query: 229 MAKDRMTLGSRYIELFPSSHEE 250
R L R + L + EE
Sbjct: 608 ERLHRKKLNGRDVFLHIVNSEE 629
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVSLLLSSKTEMQNMIELSR 87
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
++R++ +PF+ D+I+DFF + L S+ + + G PTGEA V F + +++ AA+
Sbjct: 805 VIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAVVD 864
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 865 LNDR-PIGSRKVKL 877
>gi|355686615|gb|AER98118.1| epithelial splicing regulatory protein 1 [Mustela putorius furo]
Length = 561
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 134 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 193
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 194 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 237
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 238 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 297
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 298 HKDLLGKRYIELFRSTAAEVQQVLNR 323
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 235 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 294
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD----------VRGGSPHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S + P + +P D
Sbjct: 295 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPMIPVLPQQFVPPTNVRD 353
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 354 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 403
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 404 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 443
>gi|300795130|ref|NP_001179931.1| epithelial splicing regulatory protein 1 [Bos taurus]
gi|296480439|tpg|DAA22554.1| TPA: epithelial splicing regulatory protein 1 [Bos taurus]
Length = 677
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGSRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|338728566|ref|XP_003365697.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Equus caballus]
Length = 659
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|194214972|ref|XP_001915056.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Equus caballus]
Length = 677
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|335286314|ref|XP_003355068.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
[Sus scrofa]
Length = 608
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 10/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + N S +
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVTPTNVRD 445
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + AA
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ T+ RY+E+F S EEM+ L G
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|348526958|ref|XP_003450986.1| PREDICTED: epithelial splicing regulatory protein 1 [Oreochromis
niloticus]
Length = 738
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 109/212 (51%), Gaps = 28/212 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA + ALQR
Sbjct: 251 VIRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQGRRNGEALVRFVSEEHRELALQR 310
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV YKA ++ + GG+ H D+ I+R
Sbjct: 311 HKHHMGNRYIEV--------YKATGDDFLKIAGGTSHEVAMFLSREDQI--------IVR 354
Query: 175 LRGLPFSAGKDDIMDFFK-DFVLSE--------DSIHITMNSDGRPTGEAFVEFANAEDS 225
+RGLPF+A + ++ FF + L E D I DGRPTG+AFV FA E +
Sbjct: 355 MRGLPFTATHEQVLAFFSPEDELKETCPVSGGKDGILFVRYPDGRPTGDAFVLFACEEHA 414
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 415 QCALRKHKEILGKRYIELFKSTAAEVQQVLNR 446
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 110/224 (49%), Gaps = 24/224 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----------VLFV-HKNNKFTGEAFCVLGYP 105
+VR+RGLPF T V FF D + +LFV + + + TG+AF +
Sbjct: 352 IVRMRGLPFTATHEQVLAFFSPEDELKETCPVSGGKDGILFVRYPDGRPTGDAFVLFACE 411
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIPRAKSHDEGK 164
AL+++++ +G+RY+E+F+S E + + S + +P +P +
Sbjct: 412 EHAQCALRKHKEILGKRYIELFKSTAAEVQQVLNRYSSTPLISVAPAPLMPVLPTMSLLP 471
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANA 222
LRLRGLP++A +DI+ F +F + +H+ +N GRP+G+ F++ +A
Sbjct: 472 PPGGVRDCLRLRGLPYTASIEDILTFLGEFTQDIRPHGVHMVLNQQGRPSGDCFIQMTSA 531
Query: 223 EDS--------KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
E + K M+ R SRY+E+FP S EEM L G
Sbjct: 532 ERALQASQRLHKHVMSSQRGA-NSRYVEVFPCSAEEMGLVLMGG 574
>gi|37932182|gb|AAP69824.1| SWAN ribonucleoprotein [Xenopus laevis]
Length = 877
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 28/226 (12%)
Query: 52 QPPPF----PVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPL 106
+PPP P V L GLP +E D+ E FHGL I V+ + G A L P
Sbjct: 295 KPPPLNHDDPYVCLHGLPLPVSEADIKELFHGLRIDGIVILTDPMGRHNGSALVKLITPH 354
Query: 107 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD----------------VRGGSP 150
AL+RNR MG+R++EV + +++ + + R SP
Sbjct: 355 DTFEALKRNRMLMGQRFIEVSPATERQWIVNGGHMLKQQNVGHHGPPPLMQQLITRSKSP 414
Query: 151 H-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209
+ +S PR++S E H + L+GLP A ++DFFK + EDSI+I S+G
Sbjct: 415 NPQSRPRSRSPHE------HGFCVYLKGLPHEAENKHVIDFFKKLNIVEDSIYIAYGSNG 468
Query: 210 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+ TGE F+EF N ED K+A+ + + +G+R++++ P + + M E +
Sbjct: 469 KATGEGFLEFRNEEDYKSALCRHKQYMGNRFVQVHPITKKAMLEKI 514
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 104/209 (49%), Gaps = 23/209 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLP + V +FF L+IV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPHEAENKHVIDFFKKLNIVEDSIYIAYGSNGKATGEGFLEFRNEEDYKSALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV------ 168
++Q MG R+V+V + KA+ ++ + H+ + ++ ++ E KD+ +
Sbjct: 491 HKQYMGNRFVQVHPITK----KAMLEKIDMI-----HKKM-QSYNYGEHKDAPLDAEFDK 540
Query: 169 HTGIL--RLRGLPFSAGKDDIMDFF--KDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
H L L LP+S + DI FF + F + E+++ + +++G+ G+A V+F + +D
Sbjct: 541 HGPRLWGHLSNLPYSIMRKDISHFFISEGFAIDENAVQLLTDNNGQCIGQALVQFRSEDD 600
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
++ + R L R + L + EE ++
Sbjct: 601 ARKSERLHRKKLNGRDVFLHIVNAEERND 629
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVSLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R++ +PF+ D+I+DFF + L S+ + + G PTGEA V F + +++ AA+
Sbjct: 802 VIRVQNMPFTVTVDEILDFFYGYQLIPGSVCLKFSDKGMPTGEAMVAFESRDEAMAAVVD 861
Query: 232 -DRMTLGSRYIEL 243
+ +GSR ++L
Sbjct: 862 LNERPIGSRKVKL 874
>gi|281352677|gb|EFB28261.1| hypothetical protein PANDA_016305 [Ailuropoda melanoleuca]
Length = 656
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|449277356|gb|EMC85572.1| Epithelial splicing regulatory protein 2 [Columba livia]
Length = 721
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA Q D AL+R
Sbjct: 242 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 301
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + + K++ V I+R
Sbjct: 302 HKHHMGSRYIEVYKATGEEFLK--------IAGGTSNEV-----AQFLSKENQV---IIR 345
Query: 175 LRGLPFSAGKDDIMDFF---KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++D++ F ++ + DGRPTG+AFV F+ E ++ A+ K
Sbjct: 346 MRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNALKK 405
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 406 HKEILGKRYIELFRSTAAEVQQVLNR 431
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 108/210 (51%), Gaps = 9/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T+ DV F V +LFV + + + TG+AF + A
Sbjct: 343 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 402
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+++++ +G+RY+E+FRS E + + +S + I +
Sbjct: 403 LKKHKEILGKRYIELFRSTAAEVQQVLNRYMSTPLIPTLPTPIIPVIPPPYTIATGSIRD 462
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++AG DDI++F D + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 463 CVRLRGLPYTAGIDDILEFMGDATGDIKPHGVHMVLNQQGRPSGDAFIQMKSADKAFMVA 522
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + RY+E+F S EEM+ L G
Sbjct: 523 QKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 552
>gi|326927219|ref|XP_003209790.1| PREDICTED: epithelial splicing regulatory protein 2-like [Meleagris
gallopavo]
Length = 701
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA Q D AL+R
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 286
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + + K++ V I+R
Sbjct: 287 HKHHMGSRYIEVYKATGEEFLK--------IAGGTSNEV-----AQFLSKENQV---IIR 330
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++D++ F ++ + DGRPTG+AFV F+ E ++ A+ K
Sbjct: 331 MRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNALKK 390
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 391 HKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 108/210 (51%), Gaps = 9/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T+ DV F V +LFV + + + TG+AF + A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+++++ +G+RY+E+FRS E + + +S + I +
Sbjct: 388 LKKHKEILGKRYIELFRSTAAEVQQVLNRYMSTPLIPTLPTPIIPVIPPPYTIATGSIRD 447
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++AG DDI+DF D + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 448 CVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLNQQGRPSGDAFIQMKSADKAFMVA 507
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + RY+E+F S EEM+ L G
Sbjct: 508 QKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 537
>gi|410987479|ref|XP_004000028.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Felis catus]
Length = 677
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|358420736|ref|XP_001789374.2| PREDICTED: epithelial splicing regulatory protein 1 [Bos taurus]
gi|296490145|tpg|DAA32258.1| TPA: fusilli-like [Bos taurus]
Length = 767
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 111/209 (53%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ + D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSLDQDIARFFKGLNIAKGGAALCLNAQGQRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++ +MG RY+EV+++ +++ K +NEV+ K++ V
Sbjct: 286 HKHHMGSRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KENQV--- 326
Query: 172 ILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
I+R+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ K + LG RYIELF S+ E+ + L+R
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP+ A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ +F HG+ +V ++ + +G+AF + +
Sbjct: 446 CIRLRGLPYVATTEDILDFLGEFSTDIRTHGVHMV----LNHQGRPSGDAFIQMKSADRA 501
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
A Q+ +++ M RYVEVF+ +E + + G SP
Sbjct: 502 FMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
>gi|410987481|ref|XP_004000029.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Felis catus]
Length = 659
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|301782433|ref|XP_002926629.1| PREDICTED: epithelial splicing regulatory protein 1-like
[Ailuropoda melanoleuca]
Length = 677
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|170035383|ref|XP_001845549.1| G-rich sequence factor-1 [Culex quinquefasciatus]
gi|167877365|gb|EDS40748.1| G-rich sequence factor-1 [Culex quinquefasciatus]
Length = 508
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 103/205 (50%), Gaps = 26/205 (12%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDI--VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
+RLRGLP++ TE D+ +F G+ + V + + TGEA+ L AL N+
Sbjct: 19 IRLRGLPWNITEQDIRDFLQGVQVEHVHIGINAMTKRQTGEAYLRLPTLDDQIKALDLNK 78
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+G RY+EVF + +Y +A+ + D GG +L+LR
Sbjct: 79 ATIGHRYIEVFTANEDQYEQAVNDGEGDEDGGP----------------------VLKLR 116
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD--GRPTGEAFVEFANAEDSKAAMAKDRM 234
GLP+S K+DI FF + I + +D GR +GEA VEFA D++ AM K +
Sbjct: 117 GLPWSCTKEDIKRFFVGLTIKNGINGILLLTDQLGRASGEAIVEFATEADAEQAMNKQKE 176
Query: 235 TLGSRYIELFPSSHEEMDEALSRGR 259
+GSRYIELF SS EM A R R
Sbjct: 177 KIGSRYIELFRSSTREMKWAEKRAR 201
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFA 111
PV++LRGLP+ CT+ D+ FF GL I + +L + + +GEA + A
Sbjct: 111 PVLKLRGLPWSCTKEDIKRFFVGLTIKNGINGILLLTDQLGRASGEAIVEFATEADAEQA 170
Query: 112 LQRNRQNMGRRYVEVFRSKRQE 133
+ + ++ +G RY+E+FRS +E
Sbjct: 171 MNKQKEKIGSRYIELFRSSTRE 192
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ LRG+PFS DI DFF L +I +S GRP+GE F E++ AM K
Sbjct: 425 CVHLRGMPFSCDDQDIQDFF--MPLRPVKANIEYDSRGRPSGEGNAYFETVEEAMKAMKK 482
Query: 232 DRMTLGSRYIELFPSSHE 249
+ +GSRYIELF + +
Sbjct: 483 HKEKMGSRYIELFAGARK 500
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQ 107
+ S V LRG+PF C + D+ +FF L V + + + +GE +
Sbjct: 416 FCSAEQDLFCVHLRGMPFSCDDQDIQDFFMPLRPVKANIEYDSRGRPSGEGNAYFETVEE 475
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQ 132
A++++++ MG RY+E+F R+
Sbjct: 476 AMKAMKKHKEKMGSRYIELFAGARK 500
>gi|427789699|gb|JAA60301.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 411
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 113/209 (54%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH--------GLDIVDVLFVHKNNKFTGEAFCVLGYPLQVD 109
V+R+RGLP+ T+ ++ FF G++ V + + + + +GEA+ L ++
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTSKECHIKGGINGVH-MTLSREGRPSGEAYIELESEQDME 69
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
LQR+ +++G RY+EVF+SKR E + R+ +H + +++
Sbjct: 70 IGLQRHNEHIGHRYIEVFKSKRSEMDWVVK----------------RSGAHQQ---DSLN 110
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
G +RLRGLPF K++I FF + + I + + GR TGEAFV+FA + ++ AM
Sbjct: 111 DGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAM 170
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
K + +G RYIE+F SS +E+ A+ G
Sbjct: 171 GKHKEKIGHRYIEIFKSSLQEIRSAVGMG 199
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 39/227 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++A+FF GL+IV L + TGEAF + A+ +
Sbjct: 113 CVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGK 172
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR-----------------GGSPHR-SIPR 156
+++ +G RY+E+F+S QE A+ V + GG P R + R
Sbjct: 173 HKEKIGHRYIEIFKSSLQEIRSAVGMGVPKMMRPMGSARPGPYDRAERFGGGPSRYGMGR 232
Query: 157 AKSHDEG---KDSAVHTG-------------ILRLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ G +D G + +RGLPF A + DI +FF+ ++ +
Sbjct: 233 GGRNFRGFVEEDGYADFGGSGGGARFSATGHFVHMRGLPFRATERDIFEFFQP--MNPIN 290
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+H+ GRP+GE VEFA E++ AM+KD+ + RYIELF +S
Sbjct: 291 VHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRYIELFLNS 337
>gi|71895579|ref|NP_001025737.1| epithelial splicing regulatory protein 2 [Gallus gallus]
gi|75571416|sp|Q5ZLR4.1|ESRP2_CHICK RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
gi|53128733|emb|CAG31329.1| hypothetical protein RCJMB04_5c3 [Gallus gallus]
Length = 701
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA Q D AL+R
Sbjct: 227 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 286
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + + K++ V I+R
Sbjct: 287 HKHHMGSRYIEVYKATGEEFLK--------IAGGTSNEV-----AQFLSKENQV---IIR 330
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++D++ F ++ + DGRPTG+AFV F+ E ++ A+ K
Sbjct: 331 MRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNALKK 390
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 391 HKEILGKRYIELFRSTAAEVQQVLNR 416
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 108/210 (51%), Gaps = 9/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T+ DV F V +LFV + + + TG+AF + A
Sbjct: 328 IIRMRGLPFTATQEDVLGFLGPECPVTGGKEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 387
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+++++ +G+RY+E+FRS E + + +S + I +
Sbjct: 388 LKKHKEILGKRYIELFRSTAAEVQQVLNRYMSTPLIPTLPTPIIPVIPPPYTIATGSIRD 447
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++AG DDI+DF D + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 448 CVRLRGLPYTAGIDDILDFMGDATADIKPHGVHMVLNQQGRPSGDAFIQMKSADKAFMVA 507
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + RY+E+F S EEM+ L G
Sbjct: 508 QKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 537
>gi|169641981|gb|AAI60694.1| LOC100158276 protein [Xenopus laevis]
Length = 348
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 114/203 (56%), Gaps = 10/203 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFF------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLP+ CT DV FF +G D V +F +++ K G+A V A
Sbjct: 3 IVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIF-NRDGKPRGDAVIEFESAEDVQKA 61
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++++++ MG+RYVEVF ++E +++ N + SP R + S S G
Sbjct: 62 VEQHKKYMGQRYVEVFEMNQKEA-ESLLNRMHSAL--SPTRPSSMSLSPQSSMASPPSDG 118
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RLRGLP+S + DI+ FF ++++ I ++ GR +GEAFV+F + E + A+ K
Sbjct: 119 IVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEHADQALLK 178
Query: 232 DRMTLGSRYIELFPSSHEEMDEA 254
+ +GSRYIE+FPS ++ A
Sbjct: 179 HKQEIGSRYIEIFPSRRNDVQTA 201
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 109/235 (46%), Gaps = 41/235 (17%)
Query: 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD--VLFV-HKNNKFTGEAFCVLGYPLQ 107
+ PP +VRLRGLP+ C+E D+ FF GLDI D + FV + + +GEAF
Sbjct: 112 ASPPSDGIVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEH 171
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKA-------------------------IANEV 142
D AL +++Q +G RY+E+F S+R + A I N
Sbjct: 172 ADQALLKHKQEIGSRYIEIFPSRRNDVQTARFPFRRRKGVTFAPTIKDLYDPDNCINNTS 231
Query: 143 SDVRGGSPHR----------SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK 192
D+ P S HD S VH + +RGLPF A DI +FF
Sbjct: 232 KDLLSDVPENGHINDYVKEMSAKSVDVHDFTVMSPVHD--IHIRGLPFHASGQDIANFFH 289
Query: 193 DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ + SI + ++ G TGEA V F +D+ AAMAK+R Y+EL+ +S
Sbjct: 290 PIMPLKISIEYSADAGG-ATGEAVVRFLTHDDAVAAMAKNRCHSQHGYLELYLNS 343
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I+R+RGLP+S DD+++FF D + D +H N DG+P G+A +EF +AED + A+
Sbjct: 3 IVRVRGLPWSCTADDVLNFFDDSNVRNGTDGVHFIFNRDGKPRGDAVIEFESAEDVQKAV 62
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ + +G RY+E+F + +E + L+R
Sbjct: 63 EQHKKYMGQRYVEVFEMNQKEAESLLNR 90
>gi|441647515|ref|XP_003268407.2| PREDICTED: epithelial splicing regulatory protein 1 [Nomascus
leucogenys]
Length = 821
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 388 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 447
Query: 115 NRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++ +MG RY+EV+++ +++ K +NEV+ K++ V
Sbjct: 448 HKHHMGTRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KENQV--- 488
Query: 172 ILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A
Sbjct: 489 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 548
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ K + LG RYIELF S+ E+ + L+R
Sbjct: 549 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 577
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 489 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 548
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 549 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 607
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 608 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 657
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 658 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 697
>gi|338728568|ref|XP_003365698.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Equus caballus]
Length = 604
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|326918872|ref|XP_003205709.1| PREDICTED: g-rich sequence factor 1-like, partial [Meleagris
gallopavo]
Length = 343
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 107/225 (47%), Gaps = 27/225 (12%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
Y SQ VV LRGLPFD TE D+A+FF GL I D+ FV++ + TGEA+ P V
Sbjct: 114 YESQVMSDGVVLLRGLPFDSTEDDIADFFAGLRITDITFVYRGERKTGEAYVQFAAPEMV 173
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIA------------------NEVSDVRGGSP 150
AL R+++ M RY+EV+ S ++E + ++ E RG S
Sbjct: 174 AKALLRHKEYMENRYIEVYISTKREMQRHLSLRKEMIRLRRELGSTAEERESDYTRGSSA 233
Query: 151 HRSIPRAKSHDEGKDSAVHTG-------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
R A E + TG + +RG P DI+DFF L I I
Sbjct: 234 EREKEVASEAAESSGPSSQTGSILSSLRAVHVRGFPTQVSAQDIIDFFAP--LRPRRILI 291
Query: 204 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248
NSDG TGEA V F + +D+ AMAK+R L +E+F H
Sbjct: 292 EYNSDGVATGEADVHFESYDDAVTAMAKERAQLQFGAVEVFLKEH 336
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 30/205 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R G PF CT+ ++ FF I + ++++ + G+A L V AL
Sbjct: 24 LIRAHGFPFACTKKEMMAFFDSCKIRNGENGIHFLLNRDGRRRGDALIELESKADVQKAL 83
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
++N + MG RYV+V +E+ D +S+ R +S + G+
Sbjct: 84 EKNLRYMGTRYVKV-------------HEIHDKDVDGLLQSL-RYESQ------VMSDGV 123
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG-RPTGEAFVEFANAEDSKAAMAK 231
+ LRGLPF + +DDI DFF +++ IT G R TGEA+V+FA E A+ +
Sbjct: 124 VLLRGLPFDSTEDDIADFFAGLRITD----ITFVYRGERKTGEAYVQFAAPEMVAKALLR 179
Query: 232 DRMTLGSRYIELFPSSHEEMDEALS 256
+ + +RYIE++ S+ EM LS
Sbjct: 180 HKEYMENRYIEVYISTKREMQRHLS 204
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVE 218
+E +DS ++R G PF+ K ++M FF + E+ IH +N DGR G+A +E
Sbjct: 16 EENEDSVF---LIRAHGFPFACTKKEMMAFFDSCKIRNGENGIHFLLNRDGRRRGDALIE 72
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ D + A+ K+ +G+RY+++ +++D L R
Sbjct: 73 LESKADVQKALEKNLRYMGTRYVKVHEIHDKDVDGLLQSLR 113
>gi|288806582|ref|NP_001165773.1| G-rich RNA sequence binding factor 1 [Xenopus (Silurana)
tropicalis]
gi|189442327|gb|AAI67701.1| Unknown (protein for MGC:186196) [Xenopus (Silurana) tropicalis]
Length = 348
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 114/203 (56%), Gaps = 10/203 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFF------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLP+ CT DV FF +G + V +F +++ K G+A V A
Sbjct: 3 IVRVRGLPWSCTADDVLNFFGDSNVRNGTEGVHFIF-NRDGKPRGDAVIEFESAEDVQKA 61
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++++++ MG+RYVEVF ++E +++ N + SP R + S S G
Sbjct: 62 VEQHKKYMGQRYVEVFEMNQKEA-ESLLNRMHSAL--SPTRPSSMSLSPQSSMASPPSDG 118
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RLRGLP+S + DI+ FF ++++ I ++ GR +GEAFV+F + E + A+ K
Sbjct: 119 VVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEHADQALLK 178
Query: 232 DRMTLGSRYIELFPSSHEEMDEA 254
+ +GSRYIE+FPS E+ A
Sbjct: 179 HKQEIGSRYIEIFPSRRNEIQTA 201
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 113/237 (47%), Gaps = 39/237 (16%)
Query: 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD--VLFV-HKNNKFTGEAFCVLGYPLQ 107
+ PP VVRLRGLP+ C+E D+ FF GLDI D + FV + + +GEAF
Sbjct: 112 ASPPSDGVVRLRGLPYSCSEQDIIHFFSGLDIADEGITFVLDQRGRKSGEAFVQFLSQEH 171
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKA-------------------------IANEV 142
D AL +++Q +G RY+E+F S+R E A I N
Sbjct: 172 ADQALLKHKQEIGSRYIEIFPSRRNEIQTARFPFRRRKGVTFAPTIKDLYDPDNCINNTS 231
Query: 143 SDVRGGSPHRSIPR-------AKSHDEGKDSAVHTGI--LRLRGLPFSAGKDDIMDFFKD 193
D+ P AKS D +D V + + + +RGLPF A DI +FF
Sbjct: 232 KDLLSDVPENGHINDYVKEMSAKSMDV-QDFTVMSPVHDIHIRGLPFHASGQDIANFFHP 290
Query: 194 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
+ + SI + ++ G TGEA V F ED+ AAMAK+R Y+EL+ +S E
Sbjct: 291 IMPLKISIEYSADAGG-ATGEAVVRFLTHEDAVAAMAKNRCHTQHGYLELYLNSSPE 346
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I+R+RGLP+S DD+++FF D + + +H N DG+P G+A +EF +AED + A+
Sbjct: 3 IVRVRGLPWSCTADDVLNFFGDSNVRNGTEGVHFIFNRDGKPRGDAVIEFESAEDVQKAV 62
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ + +G RY+E+F + +E + L+R
Sbjct: 63 EQHKKYMGQRYVEVFEMNQKEAESLLNR 90
>gi|119612126|gb|EAW91720.1| RNA binding motif protein 35A, isoform CRA_a [Homo sapiens]
Length = 503
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 126 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 169
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 170 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 229
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 230 HKDLLGKRYIELFRSTAAEVQQVLNR 255
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 167 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 227 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 285
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 286 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 335
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 336 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 375
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ +F HG+ +V ++ + +G+AF + +
Sbjct: 286 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQMKSADRA 341
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
A Q+ +++NM RYVEVF+ +E + + G SP
Sbjct: 342 FMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 384
>gi|21618692|gb|AAH31468.1| RNA binding motif protein 35A [Mus musculus]
Length = 444
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 126 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 169
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 170 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 229
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 230 HKELLGKRYIELFRSTAAEVQQVLNR 255
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 167 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L+++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 227 LRKHKELLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 285
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 286 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 335
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + AA + T+ RY+E+F S EEM+ L G
Sbjct: 336 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 375
>gi|60098931|emb|CAH65296.1| hypothetical protein RCJMB04_15n19 [Gallus gallus]
Length = 499
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 32/221 (14%)
Query: 36 SSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-K 90
+S+ M N + GYV V++RGLP+ C+ +V FF I++ + F++ +
Sbjct: 28 TSNVMLNTESSEGYV--------VKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTR 79
Query: 91 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
+ +GEAF L V AL+++R+ MG RYV VF+S E + + +
Sbjct: 80 EGRPSGEAFAELESEEDVKLALKKDRETMGHRYVVVFKSNNVEMDWVLKHTGPN------ 133
Query: 151 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
S D D G +RLRGLPF K++I+ FF + + I + ++ GR
Sbjct: 134 --------SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGR 180
Query: 211 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 181 STGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 221
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++ FF D + ++ I +GRP+GEAF E + ED K A+
Sbjct: 42 VVKVRGLPWSCSTEEVQRFFSDCKILNGALGIRFIYTREGRPSGEAFAELESEEDVKLAL 101
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+ +F S++ EMD L
Sbjct: 102 KKDRETMGHRYVVVFKSNNVEMDWVL 127
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 320 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 377
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 378 DKANMQHRYVELFLNS 393
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 320 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 379
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 380 ANMQHRYVELF 390
>gi|410905415|ref|XP_003966187.1| PREDICTED: epithelial splicing regulatory protein 1-like [Takifugu
rubripes]
Length = 741
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 28/212 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 235 VIRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQGRRNGEALVRFINEEHRDLALQR 294
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + D+ I+R
Sbjct: 295 HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEVAMFLSREDQI--------IVR 338
Query: 175 LRGLPFSAGKDDIMDFFKD---------FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+RGLPF+A + ++ FF +D I DGRPTG+AFV FA E +
Sbjct: 339 MRGLPFTATHEQVLSFFSPGEGLKETCPISGGQDGILFVRYPDGRPTGDAFVLFACEEHA 398
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 399 QCALRKHKEILGRRYIELFKSTAAEVQQVLNR 430
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 40/232 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---HGLDIV--------DVLFV-HKNNKFTGEAFCVLGYP 105
+VR+RGLPF T V FF GL +LFV + + + TG+AF +
Sbjct: 336 IVRMRGLPFTATHEQVLSFFSPGEGLKETCPISGGQDGILFVRYPDGRPTGDAFVLFACE 395
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD 165
AL+++++ +GRRY+E+F+S E +V + +P IP A +
Sbjct: 396 EHAQCALRKHKEILGRRYIELFKSTAAE-----VQQVLNRYSSAPL--IPVAPAPLVSVL 448
Query: 166 SAVHT--------GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEA 215
AV LRLRGLP++A +DI++F +F + + +H+ +N GRP+G+
Sbjct: 449 PAVSLLPPPGGMRDCLRLRGLPYTASIEDILNFLGEFTQDVRQHGVHMVLNQQGRPSGDC 508
Query: 216 FVEFANAEDSKAAMAKDRM---------TLGSRYIELFPSSHEEMDEALSRG 258
F++ + E +A A R+ SRY+E+FP S EEM L G
Sbjct: 509 FIQMTSLE--RALQASQRLHKQVMFSQRGSNSRYVEVFPCSAEEMGLVLMGG 558
>gi|327276493|ref|XP_003223004.1| PREDICTED: epithelial splicing regulatory protein 2-like [Anolis
carolinensis]
Length = 714
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA Q D AL+R
Sbjct: 230 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFVNSEQRDLALER 289
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + + K++ V I+R
Sbjct: 290 HKHHMGSRYIEVYKATGEEFLK--------IAGGTSNEV-----AQFLSKENQV---IIR 333
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A +D++ F ++ + DGRPTG+AFV FA E ++ A+ K
Sbjct: 334 MRGLPFTATPEDVLGFLGPECPVTGEKEGLLFVKYPDGRPTGDAFVLFACEEFAQNALKK 393
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 394 HKEILGKRYIELFRSTAAEVQQVLNR 419
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 9/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T DV F V +LFV + + + TG+AF + A
Sbjct: 331 IIRMRGLPFTATPEDVLGFLGPECPVTGEKEGLLFVKYPDGRPTGDAFVLFACEEFAQNA 390
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+++++ +G+RY+E+FRS E + + +S + I +
Sbjct: 391 LKKHKEILGKRYIELFRSTAAEVQQVLNRYMSTPLIPTLPTPIIPVIPPPYTIAAGSARD 450
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+RLRGLP++AG DDI++F D + +H+ +N GR +G+AF++ +++ +
Sbjct: 451 CVRLRGLPYTAGIDDILEFMGDATGDIKPHGVHMVLNQQGRLSGDAFIQMKSSDRAYLVA 510
Query: 230 AK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
K + + RY+E+F S EEM+ L G
Sbjct: 511 QKCHKKMMKDRYVEVFQCSGEEMNFVLMGG 540
>gi|298713992|emb|CBJ27224.1| heterogeneous nuclear ribonucleoprotein, putative [Ectocarpus
siliculosus]
Length = 525
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 111/233 (47%), Gaps = 37/233 (15%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
FP VRLRGL D + D+ +FF GL ++D++ A + G + ALQR
Sbjct: 285 FPCVRLRGLAADTSVKDILDFFVGLGPVLDIVLEGGAAGGEVGAITLFGTLMDYHGALQR 344
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAI----ANEVSDVRGGSPHRSI--------PRAKSHD- 161
+ RY+EV + R +YY A+ ++V +P P + +
Sbjct: 345 YSLQIKGRYIEVAPAIRADYYSAVIKRSTGGAAEVAPTTPAGVGGGGEQDGDPAVQGQNG 404
Query: 162 ---EGKDSAVHTG--------------------ILRLRGLPFSAGKDDIMDFFKDFVLSE 198
D+A+ G ++R+RGLP+ A K ++M FFK + E
Sbjct: 405 TVVHQSDTALAMGSAKAPGPAAAAGSAGDAKGTVIRMRGLPYRASKSEVMCFFKGCSIPE 464
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ + +DGR TGEA+V FA ED+K + KDR +GSRYIELF SS EEM
Sbjct: 465 EGVAFVTRADGRVTGEAYVRFATREDAKMGLRKDREMIGSRYIELFTSSPEEM 517
>gi|47225436|emb|CAG11919.1| unnamed protein product [Tetraodon nigroviridis]
Length = 751
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 28/212 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 253 VIRARGLPWQSSDQDIARFFRGLNIAKGGVALCLNAQGRRNGEALVRFVSEEHRDLALQR 312
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + D+ I+R
Sbjct: 313 HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEVAMFLSREDQI--------IIR 356
Query: 175 LRGLPFSAGKDDIMDFFKD---------FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+RGLPF+A + ++ FF +D I DGRPTG+AFV FA E +
Sbjct: 357 MRGLPFTATHEQVLSFFSPGEGLKGTCPVSGGKDGILFVRYPDGRPTGDAFVLFACEEHA 416
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 417 QCALRKHKEILGRRYIELFKSTAAEVQQVLNR 448
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 110/253 (43%), Gaps = 66/253 (26%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---HGLDIV--------DVLFV-HKNNKFTGEAFCVLGYP 105
++R+RGLPF T V FF GL +LFV + + + TG+AF +
Sbjct: 354 IIRMRGLPFTATHEQVLSFFSPGEGLKGTCPVSGGKDGILFVRYPDGRPTGDAFVLFACE 413
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD 165
AL+++++ +GRRY+E+F+S E +V + +P IP A +
Sbjct: 414 EHAQCALRKHKEILGRRYIELFKSTAAE-----VQQVLNRYSSAP--LIPVAPAPLVSVL 466
Query: 166 SAVHT--------GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNS-------- 207
V LRLRGLP++A +DI++F +F + +H+ +N
Sbjct: 467 PTVSLLPPPGGLRDCLRLRGLPYTAIIEDILNFLGEFTRDVRPHGVHMVLNQQVRAGTYR 526
Query: 208 ----------------------DGRPTGEAFVEFANAEDS-KAAMAKDRMTL------GS 238
GRP+G+ F++ + E + +AA + + S
Sbjct: 527 AQGPTPPGARLRRHPPWSASCLQGRPSGDCFIQMTSVEQALQAAQQLHKQVMFSQRGSNS 586
Query: 239 RYIELFPSSHEEM 251
RY+E+FP S EEM
Sbjct: 587 RYVEVFPCSAEEM 599
>gi|126328016|ref|XP_001371380.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 468
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 108/198 (54%), Gaps = 24/198 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ D+ +FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSASDIQQFFSECKIQNGAAGIHFIYTREGRPSGEAFVELESEDEVTLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNIEMDWVLKHTAPN--------------SLDTASD-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR +GEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFRCNKEEIVQFFSGLEIMPNGITLPVDFQGRNSGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEE 250
+ +G RYIE+F SS E
Sbjct: 173 KERIGHRYIEIFKSSQAE 190
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S DI FF + + + IH +GRP+GEAFVE + ++ A+
Sbjct: 12 VVKVRGLPWSCSASDIQQFFSECKIQNGAAGIHFIYTREGRPSGEAFVELESEDEVTLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNIEMDWVL 97
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLP+ A ++DI DFF L +I + SDGR TGEA VEFA ED+ AAM+KD
Sbjct: 286 VHMRGLPYKATENDICDFFSP--LKPVGAYIEIGSDGRVTGEADVEFATHEDAVAAMSKD 343
Query: 233 RMTLGSRYIELFPSSHEEMDEA 254
+ + RYIELF +S E D +
Sbjct: 344 KANMQHRYIELFLNSTTEADSS 365
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDF 110
Q P V +RGLP+ TE D+ +FF L V + + + TGEA
Sbjct: 279 QSPAGHYVHMRGLPYKATENDICDFFSPLKPVGAYIEIGSDGRVTGEADVEFATHEDAVA 338
Query: 111 ALQRNRQNMGRRYVEVFRSKRQE 133
A+ +++ NM RY+E+F + E
Sbjct: 339 AMSKDKANMQHRYIELFLNSTTE 361
>gi|440793766|gb|ELR14941.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 622
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 39/233 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH--GLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLPF TE ++ FF G+ ++D ++ + + + TGEA+ G AL
Sbjct: 122 VVRMRGLPFRATEGEIVAFFEQAGVRVLDGGVLICKNPDGRVTGEAYVQFGSDEDARRAL 181
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH------------ 160
+R+R MG RY+E+FRS + E + + + R R
Sbjct: 182 ERHRDQMGSRYIELFRSNKPELINVMRRQQT-TRDLQQQRGGYGRGHDHGHGHDHGHGHE 240
Query: 161 ---------------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205
+EG V +RLRGLPFSA +++I ++F + +HI +
Sbjct: 241 HRGGYGGPPTGPPGAEEGDGEWV----VRLRGLPFSATEEEIANWFAP--MPARRVHIIL 294
Query: 206 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
GRP+G+AF EF N + AM+K+R +GSRY+E+F SS E+ +LS G
Sbjct: 295 TGSGRPSGDAFAEFDNEAQWEHAMSKNRQHMGSRYVEIFGSSRHELMSSLSHG 347
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 111/213 (52%), Gaps = 24/213 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---------VLFVHKNNKFTGEAFCVLGYPLQV 108
VVRLRGLP+ TE D+ FF GL +L + + + TGE +
Sbjct: 8 VVRLRGLPWQATEDDIKNFFQGLTFAPDGKDGLPSILLALSPSGRPTGEGYAHFDNEETF 67
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKA--IANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL ++++ MG+RY+EVF + + KA +A V++ A + +D
Sbjct: 68 VKALAKDKERMGQRYIEVFACPQSDMEKAQMLARGVTE-----------GASAAATNEDD 116
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
++R+RGLPF A + +I+ FF+ + + + I N DGR TGEA+V+F + ED
Sbjct: 117 LQCAAVVRMRGLPFRATEGEIVAFFEQAGVRVLDGGVLICKNPDGRVTGEAYVQFGSDED 176
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
++ A+ + R +GSRYIELF S+ E+ + R
Sbjct: 177 ARRALERHRDQMGSRYIELFRSNKPELINVMRR 209
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 8/95 (8%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED------SIHITMNSDGRPTGEAFVEFANAEDS 225
++RLRGLP+ A +DDI +FF+ + D SI + ++ GRPTGE + F N E
Sbjct: 8 VVRLRGLPWQATEDDIKNFFQGLTFAPDGKDGLPSILLALSPSGRPTGEGYAHFDNEETF 67
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDEA--LSRG 258
A+AKD+ +G RYIE+F +M++A L+RG
Sbjct: 68 VKALAKDKERMGQRYIEVFACPQSDMEKAQMLARG 102
>gi|229462862|sp|Q3US41.2|ESRP1_MOUSE RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
Length = 680
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 328
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 329 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 388
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 389 HKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L+++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 386 LRKHKELLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 444
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 445 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 494
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + AA + T+ RY+E+F S EEM+ L G
Sbjct: 495 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 534
>gi|410987483|ref|XP_004000030.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Felis catus]
Length = 604
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|37747755|gb|AAH59280.1| Rbm35a protein, partial [Mus musculus]
Length = 490
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 108 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 167
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 168 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 211
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 212 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 271
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 272 HKELLGKRYIELFRSTAAEVQQVLNR 297
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 209 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 268
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L+++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 269 LRKHKELLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 327
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 328 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 377
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + AA + T+ RY+E+F S EEM+ L G
Sbjct: 378 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 417
>gi|325303152|tpg|DAA34329.1| TPA_inf: splicing factor hnRNP-F [Amblyomma variegatum]
Length = 231
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 113/209 (54%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH--------GLDIVDVLFVHKNNKFTGEAFCVLGYPLQVD 109
V+R+RGLP+ T+ ++ FF G++ V + + + + +GEA+ L ++
Sbjct: 11 VLRIRGLPWSTTKEEILNFFTAKECHIKGGINGVH-MTLSREGRPSGEAYIELESEQDME 69
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
LQR+ +++G RY+EVF+SKR E + R+ +H + +++
Sbjct: 70 IGLQRHNEHIGHRYIEVFKSKRSEMDWVVK----------------RSGAHQQ---DSLN 110
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
G +RLRGLPF K++I FF + + I + + GR TGEAFV+FA + ++ AM
Sbjct: 111 DGCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAM 170
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
K + +G RYIE+F SS +E+ A+ G
Sbjct: 171 GKHKEKIGHRYIEIFKSSLQEVRSAVRMG 199
>gi|165972311|ref|NP_918944.2| epithelial splicing regulatory protein 1 [Mus musculus]
Length = 681
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKELLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L+++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKELLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|345326895|ref|XP_001507064.2| PREDICTED: epithelial splicing regulatory protein 1, partial
[Ornithorhynchus anatinus]
Length = 605
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 154 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 213
Query: 115 NRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++ +MG RY+EV+++ +++ K +NEV+ K++ V
Sbjct: 214 HKHHMGNRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KENQV--- 254
Query: 172 ILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
I+R+RGLPF+A D++ FF ++ I DGRPTG+AFV FA E ++ A
Sbjct: 255 IVRMRGLPFTATADEVSAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 314
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ K + LG RYIELF S+ E+ + L+R
Sbjct: 315 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 343
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V+ FF + +LFV + + + TG+AF + A
Sbjct: 255 IVRMRGLPFTATADEVSAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 314
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 315 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 373
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI++F +F + +H+ +N GRP+G+AF++
Sbjct: 374 ----------CIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 423
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 424 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 463
>gi|74183823|dbj|BAE24496.1| unnamed protein product [Mus musculus]
Length = 680
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 328
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 329 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 388
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 389 HKELLGKRYIELFRSTAAEVQQVLNR 414
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 326 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 385
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L+++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 386 LRKHKELLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 444
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 445 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 494
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + AA + T+ RY+E+F S EEM+ L G
Sbjct: 495 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 534
>gi|148673702|gb|EDL05649.1| RNA binding motif protein 35A, isoform CRA_a [Mus musculus]
Length = 483
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 101 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 160
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 161 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 204
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 205 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 264
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 265 HKELLGKRYIELFRSTAAEVQQVLNR 290
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 202 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 261
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L+++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 262 LRKHKELLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 320
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 321 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 370
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + AA + T+ RY+E+F S EEM+ L G
Sbjct: 371 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 410
>gi|357613158|gb|EHJ68351.1| putative Heterogeneous nuclear ribonucleoprotein H [Danaus
plexippus]
Length = 343
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 111/199 (55%), Gaps = 17/199 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH----KNNKFTGEAFCVLGYPLQVDFAL 112
+++LRGLPF T DV F G++++ D VH + + +GE F + V AL
Sbjct: 10 IIKLRGLPFSTTAEDVLTFLSGVNVINDKEGVHLTEVRPGRPSGECFVEVQSQDDVTHAL 69
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++++N+GRRY+EVF + RQ+ A+ N + G IP GI
Sbjct: 70 KKDKENIGRRYIEVFSTDRQDMEWAL-NAMRQSENG--FDVIPNVSDD---------FGI 117
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
++LRGLPF K++I+ FF + +D +H+ + GR +GEAFV F + + ++ A+ +D
Sbjct: 118 VKLRGLPFGCSKEEIIQFFNGLSVVQDGVHLLSDHTGRASGEAFVYFVDKQSARDALDRD 177
Query: 233 RMTLGSRYIELFPSSHEEM 251
+G RYIE+F SS +++
Sbjct: 178 MEKIGHRYIEVFLSSADKV 196
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 103/225 (45%), Gaps = 42/225 (18%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
F +V+LRGLPF C++ ++ +FF+GL +V L + +GEAF AL
Sbjct: 115 FGIVKLRGLPFGCSKEEIIQFFNGLSVVQDGVHLLSDHTGRASGEAFVYFVDKQSARDAL 174
Query: 113 QRNRQNMGRRYVEVF------------------------------RSKRQEYYKAIANEV 142
R+ + +G RY+EVF R+ R
Sbjct: 175 DRDMEKIGHRYIEVFLSSADKVRAYGARLEGGGFKSRGYRPTPYDRNDRLSGRFGGRGRG 234
Query: 143 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 202
S RGGS R G+ + H + +RGLPF A DI FFK + +I+
Sbjct: 235 SFARGGSGGSYTGRG-----GRLGSSHC--VHMRGLPFKATPQDIAYFFKP--IRPLNIN 285
Query: 203 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
I ++ GRP+GEA VEF ED+ AM +D+ + RYIELF +S
Sbjct: 286 IHYDNSGRPSGEADVEFECHEDAMRAMRRDKNNMEHRYIELFMNS 330
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFK--DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I++LRGLPFS +D++ F + + ++ +H+T GRP+GE FVE + +D A+
Sbjct: 10 IIKLRGLPFSTTAEDVLTFLSGVNVINDKEGVHLTEVRPGRPSGECFVEVQSQDDVTHAL 69
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALS 256
KD+ +G RYIE+F + ++M+ AL+
Sbjct: 70 KKDKENIGRRYIEVFSTDRQDMEWALN 96
>gi|334326246|ref|XP_001379501.2| PREDICTED: epithelial splicing regulatory protein 1 [Monodelphis
domestica]
Length = 677
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 10/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + S P I + V
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSTPLIPLPTPPIIPVLPQQFVTPTNVRDC 446
Query: 172 ILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
I RLRGLP++A +DI++F +F + +H+ +N GRP+G+AF++ +A+ + AA
Sbjct: 447 I-RLRGLPYAATIEDILEFLGEFSTAIQTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 505
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ T+ RY+E+F S EEM+ L G
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|229485495|sp|B2RYD2.2|ESRP1_RAT RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
Length = 677
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 110/219 (50%), Gaps = 28/219 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKA---------IANEVSDVRGGSPHRSIPRAKSHDE 162
L++++ +G+RY+E+FRS E + I + + P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTAPIIPVLPQQFVPPTNVRD- 445
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFA 220
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ---------CVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMK 496
Query: 221 NAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + AA + T+ RY+E+F S EEM+ L G
Sbjct: 497 STDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|417412339|gb|JAA52559.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 697
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 246 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 305
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 306 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 349
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 350 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 409
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 410 HKDLLGKRYIELFRSTAAEVQQVLNR 435
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 347 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 406
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 407 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 465
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 466 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 515
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 516 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 555
>gi|148673703|gb|EDL05650.1| RNA binding motif protein 35A, isoform CRA_b [Mus musculus]
Length = 604
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKELLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L+++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKELLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSTDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|402911169|ref|XP_003918213.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like, partial
[Papio anubis]
Length = 256
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
>gi|189230098|ref|NP_001121036.2| epithelial splicing regulatory protein 1 [Rattus norvegicus]
gi|187469151|gb|AAI66735.1| RGD1560481 protein [Rattus norvegicus]
Length = 659
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 110/219 (50%), Gaps = 28/219 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKA---------IANEVSDVRGGSPHRSIPRAKSHDE 162
L++++ +G+RY+E+FRS E + I + + P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTAPIIPVLPQQFVPPTNVRD- 445
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFA 220
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ---------CVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMK 496
Query: 221 NAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + AA + T+ RY+E+F S EEM+ L G
Sbjct: 497 STDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|383856881|ref|XP_003703935.1| PREDICTED: uncharacterized protein LOC100878893 [Megachile
rotundata]
Length = 1212
Score = 113 bits (283), Expect = 6e-23, Method: Composition-based stats.
Identities = 70/210 (33%), Positives = 108/210 (51%), Gaps = 25/210 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 754 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFVNKEHRDMALKR 813
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ +A S G H + R I+R
Sbjct: 814 HKHHMGGRYIEVYKASGEDFV-GVAGGTS----GEAHAFLSRGAQV-----------IVR 857
Query: 175 LRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ ++DFF + ED + DGR TG+AFV FA ED+ A
Sbjct: 858 MRGLPYDCVAKQVLDFFLTGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDAVKA 917
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++K R +GSRYIELF S+ E+ + L+R
Sbjct: 918 LSKHRDCIGSRYIELFRSTIAEVQQVLNRA 947
Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 20/218 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+DC V +FF H LD D VLFV K + + TG+AF +
Sbjct: 855 IVRMRGLPYDCVAKQVLDFFLTGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 914
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL ++R +G RY+E+FRS E + + A + V +P S
Sbjct: 915 VKALSKHRDCIGSRYIELFRSTIAEVQQVLNRAIDPKQVVLPTPPIPQLPPILPQHIITS 974
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP+ A + I++F + + +H+ N+ G+P+GEAF++ ++E
Sbjct: 975 GTRKDCVRLRGLPYEALVEHILEFMGEHSKNIVYQGVHMVYNAQGQPSGEAFIQM-DSES 1033
Query: 225 SKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALS 256
S A A R M G RYIE+F S ++M+ L+
Sbjct: 1034 SAYACASQRHHRYMIYGKKQRYIEVFQCSGDDMNLVLT 1071
>gi|410914042|ref|XP_003970497.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Takifugu
rubripes]
Length = 406
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 107/199 (53%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ C+ +V FF G I++ + F + + + +GEAF + + A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKIINNGGAIHFTYTREGRPSGEAFVEMESEEDLKVAV 66
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + G G+
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVMKHTGPNCPG-------------------TAGDGL 107
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ + ++ A+ K
Sbjct: 108 IRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKKH 167
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 168 KERIGHRYIEIFKSSRAEV 186
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 35/223 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
++RLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL++
Sbjct: 107 LIRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKK 166
Query: 115 NRQNMGRRYVEVFRSKRQE---YYKAIANEVSDVR--------GGSPHRSIPRAKSHDE- 162
+++ +G RY+E+F+S R E +Y+ + R GG + + R S+D
Sbjct: 167 HKERIGHRYIEIFKSSRAEVRTHYEPQRKPMGMQRPGPYDRPSGGRGYNMMGRGGSYDRM 226
Query: 163 -----------------GKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
G TG + +RGLP+ A + DI +FF L+ +HI
Sbjct: 227 RRGGYGGGYSDGRYGDGGSSFQSTTGHCVHMRGLPYRATETDIYNFFSP--LNPVRVHIE 284
Query: 205 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 285 VGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 327
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFK--DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S D++ FF + + +IH T +GRP+GEAFVE + ED K A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKIINNGGAIHFTYTREGRPSGEAFVEMESEEDLKVAV 66
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD +
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVM 92
>gi|402878741|ref|XP_003903031.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Papio anubis]
Length = 659
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|56790297|ref|NP_060167.2| epithelial splicing regulatory protein 1 isoform 1 [Homo sapiens]
gi|124020999|sp|Q6NXG1.2|ESRP1_HUMAN RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|119612127|gb|EAW91721.1| RNA binding motif protein 35A, isoform CRA_b [Homo sapiens]
gi|127799385|gb|AAH67098.2| Epithelial splicing regulatory protein 1 [Homo sapiens]
Length = 681
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ +F HG+ +V ++ + +G+AF + +
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQMKSADRA 501
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
A Q+ +++NM RYVEVF+ +E + + G SP
Sbjct: 502 FMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
>gi|297683323|ref|XP_002819332.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Pongo abelii]
Length = 659
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|417412369|gb|JAA52574.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 701
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 246 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 305
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 306 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 349
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 350 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 409
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 410 HKDLLGKRYIELFRSTAAEVQQVLNR 435
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 347 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 406
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 407 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 465
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 466 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 515
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 516 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 555
>gi|170763529|ref|NP_001116298.1| epithelial splicing regulatory protein 1 isoform 3 [Homo sapiens]
gi|114620965|ref|XP_001143826.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1 [Pan
troglodytes]
Length = 659
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|395818385|ref|XP_003782611.1| PREDICTED: epithelial splicing regulatory protein 1 [Otolemur
garnettii]
Length = 665
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 214 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 273
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 274 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 317
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 318 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 377
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 378 HKDLLGKRYIELFRSTAAEVQQVLNR 403
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 315 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 374
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 375 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 433
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 434 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 483
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 484 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 523
>gi|355698103|gb|EHH28651.1| RNA-binding protein 35A [Macaca mulatta]
gi|355779831|gb|EHH64307.1| RNA-binding protein 35A [Macaca fascicularis]
Length = 681
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ +F HG+ +V ++ + +G+AF + +
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQMKSADRA 501
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
A Q+ +++NM RYVEVF+ +E + + G SP
Sbjct: 502 FMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
>gi|403295784|ref|XP_003938806.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Saimiri boliviensis boliviensis]
Length = 676
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|296226947|ref|XP_002807679.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 1 [Callithrix jacchus]
Length = 676
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|395739900|ref|XP_003777336.1| PREDICTED: epithelial splicing regulatory protein 1 [Pongo abelii]
Length = 677
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ +F HG+ +V ++ + +G+AF
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQ 494
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQE 133
+ + A Q+ +++NM RYVEVF+ +E
Sbjct: 495 MKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|344273261|ref|XP_003408442.1| PREDICTED: epithelial splicing regulatory protein 1 [Loxodonta
africana]
Length = 677
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|296803341|gb|ADH51734.1| ESRP1/RAF1 fusion protein [Homo sapiens]
Length = 1061
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ +F HG+ +V ++ + +G+AF + +
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQMKSADRA 501
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
A Q+ +++NM RYVEVF+ +E + + G SP
Sbjct: 502 FMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
>gi|170763525|ref|NP_001030087.2| epithelial splicing regulatory protein 1 isoform 2 [Homo sapiens]
gi|332830836|ref|XP_003311899.1| PREDICTED: epithelial splicing regulatory protein 1 [Pan
troglodytes]
Length = 677
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ +F HG+ +V ++ + +G+AF
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQ 494
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQE 133
+ + A Q+ +++NM RYVEVF+ +E
Sbjct: 495 MKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|348588462|ref|XP_003479985.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 1
[Cavia porcellus]
Length = 681
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|426360259|ref|XP_004047365.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Gorilla gorilla gorilla]
Length = 659
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|127799644|gb|AAH99916.2| Epithelial splicing regulatory protein 1 [Homo sapiens]
Length = 677
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ +F HG+ +V ++ + +G+AF
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQ 494
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQE 133
+ + A Q+ +++NM RYVEVF+ +E
Sbjct: 495 MKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|402878739|ref|XP_003903030.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Papio anubis]
Length = 677
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ +F HG+ +V ++ + +G+AF
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQ 494
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQE 133
+ + A Q+ +++NM RYVEVF+ +E
Sbjct: 495 MKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|348588464|ref|XP_003479986.1| PREDICTED: epithelial splicing regulatory protein 1-like isoform 2
[Cavia porcellus]
Length = 659
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|297299790|ref|XP_002808532.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 1-like [Macaca mulatta]
Length = 677
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHXKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 17/93 (18%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ +F HG+ +V ++ + +G+AF
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQ 494
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQE 133
+ + A Q+ + +NM RYVEVF+ +E
Sbjct: 495 MKSADRAFMAAQKCHXKNMKDRYVEVFQCSAEE 527
>gi|426360257|ref|XP_004047364.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 1
[Gorilla gorilla gorilla]
Length = 677
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ +F HG+ +V ++ + +G+AF
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQ 494
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQE 133
+ + A Q+ +++NM RYVEVF+ +E
Sbjct: 495 MKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|34192605|gb|AAH19932.1| ESRP1 protein [Homo sapiens]
Length = 656
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 274 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 333
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 334 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 377
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 378 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 437
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 438 HKDLLGKRYIELFRSTAAEVQQVLNR 463
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 375 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 434
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 435 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 493
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 494 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 543
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 544 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 583
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ +F HG+ +V ++ + +G+AF + +
Sbjct: 494 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQMKSADRA 549
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
A Q+ +++NM RYVEVF+ +E + + G SP
Sbjct: 550 FMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 592
>gi|395853398|ref|XP_003799198.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Otolemur garnettii]
gi|395853400|ref|XP_003799199.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Otolemur garnettii]
gi|395853402|ref|XP_003799200.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 3
[Otolemur garnettii]
Length = 449
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|431892769|gb|ELK03202.1| Heterogeneous nuclear ribonucleoprotein H [Pteropus alecto]
Length = 435
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 146 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205
RG S HR + VH +RGLP+ A ++DI +FF L+ +HI +
Sbjct: 262 RGMSDHRYGDGGSTFQSTTGHCVH-----MRGLPYRATENDIYNFFSP--LNPVRVHIEI 314
Query: 206 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 315 GPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 356
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 283 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 342
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 343 ANMQHRYVELF 353
>gi|348516774|ref|XP_003445912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Oreochromis niloticus]
Length = 406
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 35/223 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL++
Sbjct: 107 LVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKK 166
Query: 115 NRQNMGRRYVEVFRSKRQE---YYKAIANEVSDVR--------GGSPHRSIPRAKSHDE- 162
+++ +G RY+E+F+S R E +Y+ + R GG + + R S+D
Sbjct: 167 HKERIGHRYIEIFKSSRAEVRTHYEPQRKPMGMQRPGPYDRPSGGRGYNMMGRGGSYDRM 226
Query: 163 -----------------GKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
G TG + +RGLP+ A + DI +FF L+ +HI
Sbjct: 227 RRGGYGGGVSDGRYGDGGSSFQSTTGHCVHMRGLPYRATETDIYNFFSP--LNPVRVHIE 284
Query: 205 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 285 IGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 327
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 104/199 (52%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ C+ +V FF I++ + F + + + +GEAF + A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSDCKILNNGSGIHFTYTREGRPSGEAFVEFETEEDLKIAV 66
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + G+
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVMKHTGPNC-------------------PETAGDGL 107
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ + ++ A+ K
Sbjct: 108 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKKH 167
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 168 KERIGHRYIEIFKSSRAEV 186
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDF-VLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S D++ FF D +L+ S IH T +GRP+GEAFVEF ED K A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSDCKILNNGSGIHFTYTREGRPSGEAFVEFETEEDLKIAV 66
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD +
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVM 92
>gi|149061069|gb|EDM11679.1| similar to hypothetical protein FLJ20171 (predicted) [Rattus
norvegicus]
Length = 604
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 110/219 (50%), Gaps = 28/219 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKA---------IANEVSDVRGGSPHRSIPRAKSHDE 162
L++++ +G+RY+E+FRS E + I + + P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTAPIIPVLPQQFVPPTNVRD- 445
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFA 220
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ---------CVRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMK 496
Query: 221 NAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + AA + T+ RY+E+F S EEM+ L G
Sbjct: 497 STDRAFMAAQKYHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|222615465|gb|EEE51597.1| hypothetical protein OsJ_32850 [Oryza sativa Japonica Group]
Length = 340
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 128/260 (49%), Gaps = 44/260 (16%)
Query: 18 AKRQRLIDQGPSFYGTPPSS-----SFMYNP----PPAYGYVSQPPPFPVVRLRGLPFDC 68
+KR R+++ P ++G SS S Y P P G S FP VRLRGLPFDC
Sbjct: 36 SKRARMMEPAPPYFGAMGSSAAGGTSAFYQPYGTNLPGAGANSAIQNFPGVRLRGLPFDC 95
Query: 69 TEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL------------QRNR 116
++D+ +FF GLDIVD L VHKN +FTGEAF V +Q + + +R R
Sbjct: 96 DDLDICKFFVGLDIVDCLLVHKNGRFTGEAFVVFPSAMQAEAMMGGGGVSDGYEGSKRPR 155
Query: 117 QNMGRRYVEVF---------RSKRQE----YYKAIANEVSDVRGGSPHRSIPR-AKSHDE 162
Y V R++ E Y+ A+ S GG+ P A
Sbjct: 156 MIESNPYFAVTAGSPLDVSKRARMMEPAPPYFGAMG---SSAAGGTSAFYQPYGANLPGA 212
Query: 163 GKDSAVHT--GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
G +SA+ G+ RLRGLPF D +D FK FV + + ++ +GR TGEAFV F
Sbjct: 213 GANSAIQNFPGV-RLRGLPFDC---DDLDIFKFFVGLDIVDCLLVHKNGRFTGEAFVVFP 268
Query: 221 NAEDSKAAMAKDRMTLGSRY 240
+A ++ A+ ++R +G R+
Sbjct: 269 SAMQAEFALHRNRQNMGRRW 288
>gi|417412016|gb|JAA52424.1| Putative rna-binding protein fusilli, partial [Desmodus rotundus]
Length = 627
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 246 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 305
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 306 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 349
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 350 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 409
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 410 HKDLLGKRYIELFRSTAAEVQQVLNR 435
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 347 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 406
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 407 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 465
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 466 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQM 515
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 516 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 555
>gi|397477061|ref|XP_003809903.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Pan paniscus]
gi|426351280|ref|XP_004043181.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Gorilla
gorilla gorilla]
Length = 452
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|403295786|ref|XP_003938807.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Saimiri boliviensis boliviensis]
Length = 603
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
>gi|170763527|ref|NP_001116297.1| epithelial splicing regulatory protein 1 isoform 4 [Homo sapiens]
Length = 608
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ +F HG+ +V ++ + +G+AF + +
Sbjct: 446 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQMKSADRA 501
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
A Q+ +++NM RYVEVF+ +E + + G SP
Sbjct: 502 FMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
>gi|390459519|ref|XP_002744505.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Callithrix
jacchus]
Length = 472
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|7020094|dbj|BAA90992.1| unnamed protein product [Homo sapiens]
Length = 358
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 66 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 125
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 126 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 169
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 170 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 229
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 230 HKDLLGKRYIELFRSTAAEVQQVLNR 255
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 29/192 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 167 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 226
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 227 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 285
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 286 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 335
Query: 220 ANAEDSKAAMAK 231
+A+ + A K
Sbjct: 336 KSADRAFMAAQK 347
>gi|402873628|ref|XP_003919688.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H [Papio anubis]
Length = 472
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|402878743|ref|XP_003903032.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Papio anubis]
Length = 604
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ +F HG+ +V ++ + +G+AF
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQ 494
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQE 133
+ + A Q+ +++NM RYVEVF+ +E
Sbjct: 495 MKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|441595654|ref|XP_003279600.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Nomascus leucogenys]
Length = 452
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|297683325|ref|XP_002819333.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2
[Pongo abelii]
Length = 604
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ +F HG+ +V ++ + +G+AF
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQ 494
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQE 133
+ + A Q+ +++NM RYVEVF+ +E
Sbjct: 495 MKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|426360261|ref|XP_004047366.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 3
[Gorilla gorilla gorilla]
Length = 604
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ +F HG+ +V ++ + +G+AF
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQ 494
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQE 133
+ + A Q+ +++NM RYVEVF+ +E
Sbjct: 495 MKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|85700309|gb|AAI12044.1| ESRP1 protein [Homo sapiens]
Length = 392
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 73 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 132
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 133 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 176
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 177 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 236
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 237 HKDLLGKRYIELFRSTAAEVQQVLNR 262
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 174 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 233
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 234 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 292
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 293 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 342
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 343 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 382
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ +F HG+ +V ++ + +G+AF
Sbjct: 286 PPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQ 341
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
+ + A Q+ +++NM RYVEVF+ +E + + G SP
Sbjct: 342 MKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 391
>gi|441595657|ref|XP_004087258.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Nomascus leucogenys]
Length = 472
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPL 106
G Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA
Sbjct: 280 GSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE 339
Query: 107 QVDFALQRNRQNMGRRYVEVF 127
A+ +++ NM RYVE+F
Sbjct: 340 DAVAAMSKDKANMQHRYVELF 360
>gi|440897190|gb|ELR48939.1| Heterogeneous nuclear ribonucleoprotein H [Bos grunniens mutus]
Length = 472
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|261859020|dbj|BAI46032.1| heterogeneous nuclear ribonucleoprotein H1 [synthetic construct]
Length = 472
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|148701752|gb|EDL33699.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_b [Mus
musculus]
Length = 485
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 25 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 84
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 85 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 125
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 126 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 185
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 186 KERIGHRYIEIFKSSRAEV 204
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 25 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 84
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 85 KKDRETMGHRYVEVFKSNNVEMDWVL 110
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 303 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 360
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 361 DKANMQHRYVELFLNS 376
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 303 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 362
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 363 ANMQHRYVELF 373
>gi|26334977|dbj|BAC31189.1| unnamed protein product [Mus musculus]
Length = 500
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 212 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 271
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 272 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 315
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 316 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 375
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 376 HKELLGKRYIELFRSTAAEVQQVLNR 401
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 29/171 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 313 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 372
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L+++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 373 LRKHKELLGKRYIELFRSTAAEVQQVL-NRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 431
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGR 210
+RLRGLP++A +DI+DF +F + +H+ +N R
Sbjct: 432 ----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQVR 472
>gi|380792639|gb|AFE68195.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 269
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAPGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAPGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
>gi|170763533|ref|NP_001116299.1| epithelial splicing regulatory protein 1 isoform 5 [Homo sapiens]
gi|114620967|ref|XP_001143905.1| PREDICTED: epithelial splicing regulatory protein 1 isoform 2 [Pan
troglodytes]
Length = 604
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 327 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L++++ +G+RY+E+FRS E + + N S P + +P D
Sbjct: 387 LRKHKDLLGKRYIELFRSTAAEV-QQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 446 ----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQM 495
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + AA + + RY+E+F S EEM+ L G
Sbjct: 496 KSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 17/93 (18%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ +F HG+ +V ++ + +G+AF
Sbjct: 439 PPTNVRDCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQ 494
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQE 133
+ + A Q+ +++NM RYVEVF+ +E
Sbjct: 495 MKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEE 527
>gi|156375031|ref|XP_001629886.1| predicted protein [Nematostella vectensis]
gi|156216896|gb|EDO37823.1| predicted protein [Nematostella vectensis]
Length = 354
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 104/204 (50%), Gaps = 26/204 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHK-NNKFTGEAFCVLGYPLQVDFA 111
VVR RGLP+ T D+ FF +IV V F + + +GE F V+ A
Sbjct: 6 VVRARGLPWSATPEDIQNFFKDCNIVGGPQNGVHFTFGIDGRPSGECFVQFVSEKDVEKA 65
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+ N ++MG+RY+EVFRSK +E I R G P A
Sbjct: 66 LEMNNEHMGKRYIEVFRSKAEEMEWVIK------RMGPPSDRDQEA-------------- 105
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+++LRGLP+ K++I FF + + I IT++ +G+ TGE FVEFA+ E + AM K
Sbjct: 106 VVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGEGFVEFASPEIAGQAMQK 165
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
+ +G RYIE+F SS ++ L
Sbjct: 166 HKEKIGHRYIEIFKSSKSDIKYVL 189
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 107/220 (48%), Gaps = 34/220 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VV+LRGLP+ C++ ++A+FF GL+IV + + + K TGE F P A+Q+
Sbjct: 106 VVKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDEEGKTTGEGFVEFASPEIAGQAMQK 165
Query: 115 NRQNMGRRYVEVFRSKRQEY-YKAIANEVSDVRGGSPHRSIPRAKSHDEGK--------- 164
+++ +G RY+E+F+S + + Y + R G R G+
Sbjct: 166 HKEKIGHRYIEIFKSSKSDIKYVLKPKPLMSTRPGPYDRMGGPFGGPRFGRGGGDQFERR 225
Query: 165 -----------------DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207
S HT + +RGLPF A + D+ FF L+ + +
Sbjct: 226 GGFGGGRSGGTGGFSGVSSTGHT--VAMRGLPFGAKETDVKQFF--MPLNPVEVRLRWGP 281
Query: 208 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
DGR GE V+FA D+ AAM+KDR T+G RYIELF +S
Sbjct: 282 DGRCCGEGEVDFATHADATAAMSKDRQTMGHRYIELFLNS 321
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
++R RGLP+SA +DI +FFKD + ++ +H T DGRP+GE FV+F + +D + A
Sbjct: 6 VVRARGLPWSATPEDIQNFFKDCNIVGGPQNGVHFTFGIDGRPSGECFVQFVSEKDVEKA 65
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ + +G RYIE+F S EEM+ + R
Sbjct: 66 LEMNNEHMGKRYIEVFRSKAEEMEWVIKR 94
>gi|26353116|dbj|BAC40188.1| unnamed protein product [Mus musculus]
Length = 472
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|281351805|gb|EFB27389.1| hypothetical protein PANDA_010030 [Ailuropoda melanoleuca]
Length = 472
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPL 106
G Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA
Sbjct: 280 GSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE 339
Query: 107 QVDFALQRNRQNMGRRYVEVF 127
A+ +++ NM RYVE+F
Sbjct: 340 DAVAAMSKDKANMQHRYVELF 360
>gi|5031753|ref|NP_005511.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens]
gi|300794637|ref|NP_001180163.1| heterogeneous nuclear ribonucleoprotein H [Bos taurus]
gi|381342476|ref|NP_001244222.1| heterogeneous nuclear ribonucleoprotein H [Homo sapiens]
gi|73970381|ref|XP_857122.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 19
[Canis lupus familiaris]
gi|109080078|ref|XP_001099955.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 7
[Macaca mulatta]
gi|114603795|ref|XP_001150460.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2 [Pan
troglodytes]
gi|291410134|ref|XP_002721348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H1-like
[Oryctolagus cuniculus]
gi|301771512|ref|XP_002921169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Ailuropoda melanoleuca]
gi|311249564|ref|XP_003123691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sus scrofa]
gi|348551747|ref|XP_003461691.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Cavia
porcellus]
gi|403307005|ref|XP_003944005.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 1
[Saimiri boliviensis boliviensis]
gi|403307007|ref|XP_003944006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform 2
[Saimiri boliviensis boliviensis]
gi|410947937|ref|XP_003980698.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Felis catus]
gi|426228702|ref|XP_004008435.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Ovis aries]
gi|1710632|sp|P31943.4|HNRH1_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein H, N-terminally processed
gi|347314|gb|AAA91346.1| hnRNP H [Homo sapiens]
gi|12655001|gb|AAH01348.1| HNRPH1 protein [Homo sapiens]
gi|119574192|gb|EAW53807.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_a [Homo
sapiens]
gi|119574193|gb|EAW53808.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_a [Homo
sapiens]
gi|193784895|dbj|BAG54048.1| unnamed protein product [Homo sapiens]
gi|296486243|tpg|DAA28356.1| TPA: heterogeneous nuclear ribonucleoprotein H1 (H) [Bos taurus]
Length = 449
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|410912184|ref|XP_003969570.1| PREDICTED: epithelial splicing regulatory protein 2-like [Takifugu
rubripes]
Length = 740
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 109/209 (52%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL I L ++ + GEA P D AL+R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLTIAKGGVALCLNAQGRRNGEALVRFINPEHRDLALER 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++ +MG RY+EV+++ +E+ K +NEV+ K++ V
Sbjct: 285 HKHHMGNRYIEVYKATGEEFLKIAGGTSNEVTQFLS----------------KENQV--- 325
Query: 172 ILRLRGLPFSAGKDDIMDFF---KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
I+R+RGLPF+A +++ F + + DGRPTG+AFV F+ E ++ A
Sbjct: 326 IIRMRGLPFTATPQEVLSFIGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 385
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ K + LG RYIELF S+ E+ + L+R
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 13/214 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T +V F V +LFV + + + TG+AF + A
Sbjct: 326 IIRMRGLPFTATPQEVLSFIGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 385
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS----DVRGGSPHRSIPRAKSHDEGKDSA 167
L++++Q +G+RY+E+FRS E + + +S SP + + ++
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPSPIVPVSVLTTPPFLPTAS 445
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+RLRGLP++AG +DI++F + + +H+ +N GRP+G+AF++ + + +
Sbjct: 446 TTRDCVRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLNQQGRPSGDAFIQLKSPDKA 505
Query: 226 -KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
A + T+ RY+E+F S EEM L G
Sbjct: 506 FLVAQKCHKKTMKDRYVEVFQCSTEEMSIVLMGG 539
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++R++GLP++ G DI+ FF+ + L D++ I N G+ +GEA + F + E +K A+A
Sbjct: 663 ALVRMQGLPYNTGVKDILSFFQGYQLQPDAVLILYNFSGQCSGEALITFPSEEMAKQAVA 722
Query: 231 K 231
+
Sbjct: 723 E 723
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 18/151 (11%)
Query: 14 REMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPF 66
R A+ Q+++++ + TP S+ +P ++ PP P VRLRGLP+
Sbjct: 402 RSTAAEVQQVLNR---YMSTPLISTLPPSPIVPVSVLTTPPFLPTASTTRDCVRLRGLPY 458
Query: 67 DCTEVDVAEFFHGLDIVDV------LFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNM 119
D+ EF G VD+ + +++ + +G+AF L P + Q+ +++ M
Sbjct: 459 TAGIEDILEFM-GEHTVDIKPHGVHMVLNQQGRPSGDAFIQLKSPDKAFLVAQKCHKKTM 517
Query: 120 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
RYVEVF+ +E + + G SP
Sbjct: 518 KDRYVEVFQCSTEEMSIVLMGGTLNRSGLSP 548
>gi|10946928|ref|NP_067485.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus]
gi|46396669|sp|O35737.3|HNRH1_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; Contains: RecName: Full=Heterogeneous
nuclear ribonucleoprotein H, N-terminally processed
gi|2253041|emb|CAA74583.1| heterogeneous nuclear ribonucleoprotein H [Mus musculus]
gi|33604202|gb|AAH56224.1| Heterogeneous nuclear ribonucleoprotein H1 [Mus musculus]
gi|37589940|gb|AAH42187.2| Heterogeneous nuclear ribonucleoprotein H1 [Mus musculus]
gi|74149585|dbj|BAE36421.1| unnamed protein product [Mus musculus]
gi|148701754|gb|EDL33701.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_d [Mus
musculus]
gi|149052456|gb|EDM04273.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_b [Rattus
norvegicus]
Length = 449
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|120538378|gb|AAI29088.1| Hnrph1 protein [Rattus norvegicus]
Length = 429
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|383417967|gb|AFH32197.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|410224062|gb|JAA09250.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
Length = 449
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|321466664|gb|EFX77658.1| hypothetical protein DAPPUDRAFT_198258 [Daphnia pulex]
Length = 397
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 21/204 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVH----KNNKFTGEAFCVLGYPLQVDFAL 112
VVRLRGLP+ T+ D+ +FF +IV +H + + TGE + L V+ AL
Sbjct: 8 VVRLRGLPWAVTDDDILKFFEDSNIVGGAAGIHMTYTREGRPTGEGYLELSSEEDVERAL 67
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
++ +++G RY+EVFRSKR E + R G P+ + P S+
Sbjct: 68 TKHNEHLGPRYIEVFRSKRSEMEWMVK------RSGPPNAAAP----------SSDDDCF 111
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I FF + + I + + GR TGEA+++FA + ++ A+ K
Sbjct: 112 VRLRGLPFGCSKEEIAQFFTGLEIVPNGITLPTDYSGRSTGEAYIQFATSALAERALEKH 171
Query: 233 RMTLGSRYIELFPSSHEEMDEALS 256
+ +G RYIE+F SS E AL+
Sbjct: 172 KEKIGHRYIEIFRSSLSEARAALA 195
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKD--FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++RLRGLP++ DDI+ FF+D V IH+T +GRPTGE ++E ++ ED + A+
Sbjct: 8 VVRLRGLPWAVTDDDILKFFEDSNIVGGAAGIHMTYTREGRPTGEGYLELSSEEDVERAL 67
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
K LG RYIE+F S EM+ + R
Sbjct: 68 TKHNEHLGPRYIEVFRSKRSEMEWMVKR 95
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++A+FF GL+IV L + + TGEA+ + AL+++
Sbjct: 112 VRLRGLPFGCSKEEIAQFFTGLEIVPNGITLPTDYSGRSTGEAYIQFATSALAERALEKH 171
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIAN 140
++ +G RY+E+FRS E A+A+
Sbjct: 172 KEKIGHRYIEIFRSSLSEARAALAS 196
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 8/87 (9%)
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
DEG +H +RGLPF A +DDI +FF L +IHI GR +GEA VEFA
Sbjct: 302 DEGSGHRIH-----MRGLPFRASEDDIAEFFHP--LHPVAIHIGYEQ-GRASGEADVEFA 353
Query: 221 NAEDSKAAMAKDRMTLGSRYIELFPSS 247
ED+ AM++D+ + RYIELF +S
Sbjct: 354 THEDAVRAMSRDKCNMQHRYIELFLNS 380
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
+ +RGLPF +E D+AEFFH L V + ++ + +GEA A+ R++ N
Sbjct: 309 IHMRGLPFRASEDDIAEFFHPLHPVAIHIGYEQGRASGEADVEFATHEDAVRAMSRDKCN 368
Query: 119 MGRRYVEVF 127
M RY+E+F
Sbjct: 369 MQHRYIELF 377
>gi|157111781|ref|XP_001651725.1| G-rich sequence factor-1, putative [Aedes aegypti]
gi|108878303|gb|EAT42528.1| AAEL005947-PB [Aedes aegypti]
Length = 491
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 26/205 (12%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDI--VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
+RLRGLP++ TE D+ +F G++I V + + TGEA+ + AL +N+
Sbjct: 24 IRLRGLPWNITEGDIRDFLSGVEIDQVHICINQMTKRQTGEAYLRMPTLEDQIKALDQNK 83
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+G RY+EVF + ++ KA+ E S GG +LR+R
Sbjct: 84 ATLGHRYIEVFTASDDQFDKAVNREESAEDGGP----------------------VLRMR 121
Query: 177 GLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
GLP+S +D+ FF + + I + ++ GR +GEA VEFA ++ AM+K +
Sbjct: 122 GLPWSCTTEDVKRFFSGLTIKNGYNGIVLLLDQLGRASGEAIVEFATDAEADQAMSKQKE 181
Query: 235 TLGSRYIELFPSSHEEMDEALSRGR 259
+G+RYIELF SS EM A +R R
Sbjct: 182 KIGNRYIELFRSSTREMKWAENRLR 206
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFA 111
PV+R+RGLP+ CT DV FF GL I + VL + + + +GEA + D A
Sbjct: 116 PVLRMRGLPWSCTTEDVKRFFSGLTIKNGYNGIVLLLDQLGRASGEAIVEFATDAEADQA 175
Query: 112 LQRNRQNMGRRYVEVFRSKRQE 133
+ + ++ +G RY+E+FRS +E
Sbjct: 176 MSKQKEKIGNRYIELFRSSTRE 197
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ LRG+PFS + DI DFF L +++ +S GRP+GE F E++ AM K
Sbjct: 409 CVHLRGMPFSCDEQDIYDFF--MPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKK 466
Query: 232 DRMTLGSRYIELFPSS 247
+ +GSRYIELF S
Sbjct: 467 HKEKMGSRYIELFAGS 482
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V LRG+PF C E D+ +FF L V + + +GE + A+++++
Sbjct: 409 CVHLRGMPFSCDEQDIYDFFMPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKKHK 468
Query: 117 QNMGRRYVEVFRSKRQ 132
+ MG RY+E+F R+
Sbjct: 469 EKMGSRYIELFAGSRR 484
>gi|157111783|ref|XP_001651726.1| G-rich sequence factor-1, putative [Aedes aegypti]
gi|108878304|gb|EAT42529.1| AAEL005947-PA [Aedes aegypti]
Length = 471
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 106/205 (51%), Gaps = 26/205 (12%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDI--VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
+RLRGLP++ TE D+ +F G++I V + + TGEA+ + AL +N+
Sbjct: 24 IRLRGLPWNITEGDIRDFLSGVEIDQVHICINQMTKRQTGEAYLRMPTLEDQIKALDQNK 83
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+G RY+EVF + ++ KA+ E S GG +LR+R
Sbjct: 84 ATLGHRYIEVFTASDDQFDKAVNREESAEDGGP----------------------VLRMR 121
Query: 177 GLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
GLP+S +D+ FF + + I + ++ GR +GEA VEFA ++ AM+K +
Sbjct: 122 GLPWSCTTEDVKRFFSGLTIKNGYNGIVLLLDQLGRASGEAIVEFATDAEADQAMSKQKE 181
Query: 235 TLGSRYIELFPSSHEEMDEALSRGR 259
+G+RYIELF SS EM A +R R
Sbjct: 182 KIGNRYIELFRSSTREMKWAENRLR 206
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFA 111
PV+R+RGLP+ CT DV FF GL I + VL + + + +GEA + D A
Sbjct: 116 PVLRMRGLPWSCTTEDVKRFFSGLTIKNGYNGIVLLLDQLGRASGEAIVEFATDAEADQA 175
Query: 112 LQRNRQNMGRRYVEVFRSKRQE 133
+ + ++ +G RY+E+FRS +E
Sbjct: 176 MSKQKEKIGNRYIELFRSSTRE 197
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ LRG+PFS + DI DFF L +++ +S GRP+GE F E++ AM K
Sbjct: 389 CVHLRGMPFSCDEQDIYDFF--MPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKK 446
Query: 232 DRMTLGSRYIELFPSS 247
+ +GSRYIELF S
Sbjct: 447 HKEKMGSRYIELFAGS 462
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V LRG+PF C E D+ +FF L V + + +GE + A+++++
Sbjct: 389 CVHLRGMPFSCDEQDIYDFFMPLRPVKCNVSFDSRGRPSGEGDAYFDTMEEAMKAMKKHK 448
Query: 117 QNMGRRYVEVFRSKRQ 132
+ MG RY+E+F R+
Sbjct: 449 EKMGSRYIELFAGSRR 464
>gi|126290596|ref|XP_001369385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Monodelphis
domestica]
Length = 449
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSECKIQNGASGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF + + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSECKIQNGASGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|341896441|gb|EGT52376.1| hypothetical protein CAEBREN_32196, partial [Caenorhabditis
brenneri]
Length = 616
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 105/203 (51%), Gaps = 21/203 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V R RGLP+ ++ VA+FF GLDIV L + + GE D AL+R
Sbjct: 184 VCRARGLPWQASDQHVAQFFAGLDIVPCGIALCLSSEGRRNGEVLVQFASQESRDLALKR 243
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+R + RY+EV YKA +E V GS S + + + + I+R
Sbjct: 244 HRNFLLSRYIEV--------YKAGLDEFMHVATGS---------STEAMEFVSANAVIVR 286
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+RGLP+ + I FF+ L+E + IT +DGRPTG+AFV+F ED++ + K R
Sbjct: 287 MRGLPYDCSDNQIRAFFEPLKLTEKILFIT-RTDGRPTGDAFVQFETEEDAQKGLLKHRH 345
Query: 235 TLGSRYIELFPSSHEEMDEALSR 257
+G RYIELF S+ E+ + + R
Sbjct: 346 IIGQRYIELFKSTAAEVQQVVKR 368
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 112/205 (54%), Gaps = 19/205 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRN 115
+VR+RGLP+DC++ + FF L + + +LF+ + + + TG+AF L ++
Sbjct: 284 IVRMRGLPYDCSDNQIRAFFEPLKLTEKILFITRTDGRPTGDAFVQFETEEDAQKGLLKH 343
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRA-KSHDEGKDSAVHTGILR 174
R +G+RY+E+F+S E + + ++ +P ++ A ++ DE K V R
Sbjct: 344 RHIIGQRYIELFKSTAAEVQQVVKR--CNLINSNP--AVANAIETPDEKKKDCV-----R 394
Query: 175 LRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAE---DSKAAM 229
LRGLP+ A I+ F ++ ++ +H+ N+ G P+GEAF++ + + + A +
Sbjct: 395 LRGLPYEATVQHIVTFLGEYSSMVKFQGVHMVYNNQGHPSGEAFIQMISEQAAAATAAGV 454
Query: 230 AKDRMTLG--SRYIELFPSSHEEMD 252
+ M +G RYIE+F S+ EE++
Sbjct: 455 HNNFMCVGKKKRYIEVFQSTAEELN 479
>gi|395521348|ref|XP_003764780.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Sarcophilus harrisii]
Length = 304
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ DV FF G I + + F++ + + +GEAF L +V+ AL
Sbjct: 11 VVKVRGLPWSCSASDVQHFFSGCRIRNGVAGIHFIYTREGRPSGEAFVELESEEEVELAL 70
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ M RYVEVFRS E + R+ P S D D G
Sbjct: 71 KKHRETMAHRYVEVFRSNAVEMDWTLK------------RTAP--NSPDPAGD-----GY 111
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF+ K+DI+ FF + + I + ++ GR +GEAFV+FA+ E ++ A+ K
Sbjct: 112 VRLRGLPFNCNKEDIVQFFSGLEIMPNGIMLQVDFRGRNSGEAFVQFASQEIAEKALKKH 171
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 172 KERMGHRYIEIFKSSQAEV 190
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF+C + D+ +FF GL+I+ +L V + +GEAF + AL+++
Sbjct: 112 VRLRGLPFNCNKEDIVQFFSGLEIMPNGIMLQVDFRGRNSGEAFVQFASQEIAEKALKKH 171
Query: 116 RQNMGRRYVEVFRSKRQEYY 135
++ MG RY+E+F+S + E +
Sbjct: 172 KERMGHRYIEIFKSSQAEVH 191
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D+ FF + IH +GRP+GEAFVE + E+ + A+
Sbjct: 11 VVKVRGLPWSCSASDVQHFFSGCRIRNGVAGIHFIYTREGRPSGEAFVELESEEEVELAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
K R T+ RY+E+F S+ EMD L R
Sbjct: 71 KKHRETMAHRYVEVFRSNAVEMDWTLKR 98
>gi|395830118|ref|XP_003788182.1| PREDICTED: RNA-binding protein 12 [Otolemur garnettii]
Length = 1478
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF TE DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSATENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTVPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 6/199 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++Q MG R+++V ++ + I ++ S + +G +
Sbjct: 491 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREIILNPEGDGNSGKI---CAH 547
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+ +PFS K D++ F + + E+++H+ +++ G+ G+A V+F N +D++ + R
Sbjct: 548 ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNSGQGLGQALVQFKNEDDARKSERLHRK 607
Query: 235 TLGSRYIELFPSSHEEMDE 253
L R + + E+M E
Sbjct: 608 KLNGREAFVHIVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 869 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 928
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 929 LNDR-PIGSRKVKLM 942
>gi|197215644|gb|ACH53036.1| RNA binding motif protein 12, isoform 1 (predicted) [Otolemur
garnettii]
Length = 1475
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF TE DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSATENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTVPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 94/199 (47%), Gaps = 6/199 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++Q MG R+++V ++ + I ++ S + +G +
Sbjct: 491 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREIILNPEGDGNSGKI---CAH 547
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+ +PFS K D++ F + + E+++H+ +++ G+ G+A V+F N +D++ + R
Sbjct: 548 ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNSGQGLGQALVQFKNEDDARKSERLHRK 607
Query: 235 TLGSRYIELFPSSHEEMDE 253
L R + + E+M E
Sbjct: 608 KLNGREAFVHIVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 869 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 928
Query: 231 -KDRMTLGSRYI 241
DR +GSR +
Sbjct: 929 LNDR-PIGSRKM 939
>gi|119574194|gb|EAW53809.1| heterogeneous nuclear ribonucleoprotein H1 (H), isoform CRA_b [Homo
sapiens]
Length = 393
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|350594874|ref|XP_003483994.1| PREDICTED: RNA-binding protein 12 isoform 1 [Sus scrofa]
gi|350594876|ref|XP_003483995.1| PREDICTED: RNA-binding protein 12 isoform 2 [Sus scrofa]
gi|350594878|ref|XP_003483996.1| PREDICTED: RNA-binding protein 12 isoform 3 [Sus scrofa]
Length = 933
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV EFFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAVENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSVTKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 858 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 917
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 918 LNDR-PIGSRKVKL 930
>gi|48145673|emb|CAG33059.1| HNRPH1 [Homo sapiens]
Length = 449
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSGAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|148688440|gb|EDL20387.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_b [Mus
musculus]
Length = 460
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + V F++ + + +GEAF L +V AL
Sbjct: 23 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 82
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 83 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 123
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 124 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 183
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 184 KERIGHRYIEIFKSSRAEV 202
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 23 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 82
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 83 KKDRETMGHRYVEVFKSNSVEMDWVL 108
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 301 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 358
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 359 DKANMQHRYVELFLNS 374
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 301 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 360
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 361 ANMQHRYVELF 371
>gi|344265353|ref|XP_003404749.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Loxodonta
africana]
Length = 449
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 110/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L V AL
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDDVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++ FF D + + I +GRP+GEAFVE + +D K A+
Sbjct: 12 VVKVRGLPWSCSAEEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDDVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|62078769|ref|NP_001014041.1| heterogeneous nuclear ribonucleoprotein H2 [Rattus norvegicus]
gi|81910860|sp|Q6AY09.1|HNRH2_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|50927747|gb|AAH79240.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Rattus norvegicus]
gi|149055432|gb|EDM07016.1| similar to Murine homolog of human ftp-3, isoform CRA_a [Rattus
norvegicus]
gi|149055433|gb|EDM07017.1| similar to Murine homolog of human ftp-3, isoform CRA_a [Rattus
norvegicus]
Length = 449
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + V F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|159155917|gb|AAI54577.1| Heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
Length = 403
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 32/220 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL++
Sbjct: 108 LVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK 167
Query: 115 NRQNMGRRYVEVFRSKRQE---YYKAIANEVSDVR--------GGSPHRSIPRAKSHD-- 161
+++ +G RY+E+F+S R E +Y+ + R GG + S+ R S +
Sbjct: 168 HKERIGHRYIEIFKSSRAEVRTHYEPQRKVMGMQRPSPYDRPGGGRGYNSMGRGVSFERM 227
Query: 162 -------------EGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207
G TG + +RGLP+ A + DI +FF L+ +H+ +
Sbjct: 228 RRGGYGGDGRYGDSGSSFQSTTGHCVHMRGLPYRATETDIYNFFSP--LNPVRVHLEIGP 285
Query: 208 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 286 DGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 325
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ C+ +V FF I + F + + + +GEAF + A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKSAV 67
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + D G D G+
Sbjct: 68 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNCP--------------DTGGD-----GL 108
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ + ++ A+ K
Sbjct: 109 VRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKH 168
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 169 KERIGHRYIEIFKSSRAEV 187
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S D++ FF + ++ + SIH T +GRP+GEAFVEF + ED K+A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKSAV 67
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 68 KKDRETMGHRYVEVFKSNSVEMDWVL 93
>gi|9845253|ref|NP_063921.1| heterogeneous nuclear ribonucleoprotein H2 [Mus musculus]
gi|354474917|ref|XP_003499676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Cricetulus griseus]
gi|354474919|ref|XP_003499677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Cricetulus griseus]
gi|46577330|sp|P70333.1|HNRH2_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|1666700|gb|AAB47243.1| Murine homolog of human ftp-3 [Mus musculus]
gi|13529467|gb|AAH05461.1| Hnrph2 protein [Mus musculus]
gi|26346655|dbj|BAC36976.1| unnamed protein product [Mus musculus]
gi|74139495|dbj|BAE40886.1| unnamed protein product [Mus musculus]
gi|74207684|dbj|BAE40087.1| unnamed protein product [Mus musculus]
gi|74211079|dbj|BAE37634.1| unnamed protein product [Mus musculus]
gi|148688439|gb|EDL20386.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_a [Mus
musculus]
gi|148688441|gb|EDL20388.1| heterogeneous nuclear ribonucleoprotein H2, isoform CRA_a [Mus
musculus]
gi|344238071|gb|EGV94174.1| Heterogeneous nuclear ribonucleoprotein H2 [Cricetulus griseus]
Length = 449
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + V F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|355691923|gb|EHH27108.1| hypothetical protein EGK_17225 [Macaca mulatta]
Length = 472
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 107/199 (53%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ +R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KEDRETMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
+DR T+G RY+E+F S++ EMD L
Sbjct: 72 KEDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|324506224|gb|ADY42662.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 416
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 107/208 (51%), Gaps = 19/208 (9%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFAL 112
P +RLRGLPF E DV F G+ + F + + + +GE + L V AL
Sbjct: 3 PETNFIRLRGLPFAAKESDVRNFLQGITAKSITFTLTSSGRASGECYVELNDNSAVKEAL 62
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ +R + RY+EVF E + + V +RG E + +
Sbjct: 63 KLDRNEINGRYIEVFTVSEGELAMMVRHGV--IRGSG------------ESESRYASNYV 108
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLP+SA DDI +FFK +++ + I GRP+GEAFV A+ E ++ A+ +
Sbjct: 109 VRLRGLPYSANVDDIKEFFKGLDVAD--VVIDKEQGGRPSGEAFVRLASKEHAELALERS 166
Query: 233 RMTLGSRYIELFPSSHEEMDEAL--SRG 258
+ +GSRY+E+F SS EEMD + SRG
Sbjct: 167 KNNMGSRYVEVFRSSGEEMDNSFYTSRG 194
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+RGLP++ DI +FFK E I + N D R +G+ V F+ +++ A+++++
Sbjct: 275 MRGLPYNVTALDIEEFFKPLNCVE--IKLGYNEDRRLSGDGIVLFSTMAEARDALSRNKN 332
Query: 235 TLGSRYIELFPSSH 248
+GSRYIELFP ++
Sbjct: 333 NIGSRYIELFPGTN 346
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLP++ T +D+ EFF L+ V++ L +++ + +G+ + + AL RN+
Sbjct: 273 VFMRGLPYNVTALDIEEFFKPLNCVEIKLGYNEDRRLSGDGIVLFSTMAEARDALSRNKN 332
Query: 118 NMGRRYVEVF 127
N+G RY+E+F
Sbjct: 333 NIGSRYIELF 342
>gi|345495521|ref|XP_001604031.2| PREDICTED: RNA-binding protein fusilli-like [Nasonia vitripennis]
Length = 817
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 125/259 (48%), Gaps = 39/259 (15%)
Query: 14 REMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPF---PVVRLRGLPFDCTE 70
++M A QR+I G F P + + P G S+ VVR RGLP+ ++
Sbjct: 209 QDMIAVIQRMIKDGHVFE-NPEVVNLVLEP----GICSKDEKVDSNCVVRARGLPWQSSD 263
Query: 71 VDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
DVA+FF GL++ L + + GEA D AL+R++ ++ +RY+EV
Sbjct: 264 QDVAKFFRGLNVAKGGVALCLSAQGRRNGEALVRFVSKEHRDMALKRHKHHIDQRYIEV- 322
Query: 128 RSKRQEYYKAIANEVSDVRGGS---PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGK 184
YKA+ + V GG+ H + R I+R+RGLP+
Sbjct: 323 -------YKALGEDFVSVAGGTNGEAHAFLSRGAQ-----------VIVRMRGLPYDCTA 364
Query: 185 DDIMDFF------KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
+++FF + ED + +DGR TG+AFV FA ED+ A++K R +GS
Sbjct: 365 KQVLEFFLTGQKPCQVLDGEDGVLFVKKADGRATGDAFVLFAQEEDAAKALSKHRDCIGS 424
Query: 239 RYIELFPSSHEEMDEALSR 257
RYIELF S+ E+ + L+R
Sbjct: 425 RYIELFRSTTAEVQQVLNR 443
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 27/221 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+DCT V EFF LD D VLFV K + + TG+AF +
Sbjct: 352 IVRMRGLPYDCTAKQVLEFFLTGQKPCQVLDGEDGVLFVKKADGRATGDAFVLFAQEEDA 411
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP-HRSIPRAKSHDEGKDSA 167
AL ++R +G RY+E+FRS E + + N VSD++ P R+I +
Sbjct: 412 AKALSKHRDCIGSRYIELFRSTTAEVQQVL-NRVSDIK---PFERTIMQPLPPLPLPQHF 467
Query: 168 VHTG----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFAN 221
+ +G +RLRGLP+ A + I++F + + +H+ N+ G+P+GEAF++ N
Sbjct: 468 ITSGTRKDCVRLRGLPYEALVEHILEFMGEHSKNIEYQGVHMVFNAQGQPSGEAFIQM-N 526
Query: 222 AEDSKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALS 256
+E + A R M G RYIE+F S E+M+ L+
Sbjct: 527 SEAAAYVCASQRHHRYMIYGKKQRYIEVFQCSGEDMNMVLT 567
>gi|45387779|ref|NP_991247.1| heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
gi|41107558|gb|AAH65439.1| Heterogeneous nuclear ribonucleoprotein H1 [Danio rerio]
Length = 403
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 32/220 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL++
Sbjct: 108 LVRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK 167
Query: 115 NRQNMGRRYVEVFRSKRQE---YYKAIANEVSDVR--------GGSPHRSIPRAKSHD-- 161
+++ +G RY+E+F+S R E +Y+ + R GG + S+ R S +
Sbjct: 168 HKERIGHRYIEIFKSSRAEVRTHYEPQRKVMGMQRPSPYDRPGGGRGYNSMGRGVSFERM 227
Query: 162 -------------EGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207
G TG + +RGLP+ A + DI +FF L+ +H+ +
Sbjct: 228 RRGGYGGDGRYGDSGSSFQSTTGHCVHMRGLPYRATETDIYNFFSP--LNPVRVHLEIGP 285
Query: 208 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 286 DGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 325
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ C+ +V FF I + F + + + +GEAF + A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKIAV 67
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + + G D G+
Sbjct: 68 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPNCP--------------ETGGD-----GL 108
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ + ++ A+ K
Sbjct: 109 VRLRGLPFGCSKEEIVQFFAGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKH 168
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 169 KERIGHRYIEIFKSSRAEV 187
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S D++ FF + ++ + SIH T +GRP+GEAFVEF + ED K A+
Sbjct: 8 VVRVRGLPWSCSVDEVQRFFSECKIASNGTSIHFTYTREGRPSGEAFVEFESEEDLKIAV 67
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 68 KKDRETMGHRYVEVFKSNSVEMDWVL 93
>gi|74184867|dbj|BAE39056.1| unnamed protein product [Mus musculus]
Length = 914
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L V +NN G P AL+R
Sbjct: 228 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 285 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRS 344
Query: 167 -AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 345 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDA 404
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 405 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 436
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 353 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 412
Query: 115 NRQNMGRRYVEVFRSKRQEYY-------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
++Q MG R+++V ++ K + N D R + EG+ S+
Sbjct: 413 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQR---------ELVLNPEGEVSS 463
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ +PFS K D++ F + + E ++H+ ++++G+ G+A V+F +D+
Sbjct: 464 AKV-CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHK 522
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDE 253
+ R L R + + E+M E
Sbjct: 523 SEHLHRKKLNGREAFVHIVTLEDMRE 548
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 839 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 898
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 899 LNDR-PIGSRKVKL 911
>gi|159469283|ref|XP_001692797.1| splicing factor [Chlamydomonas reinhardtii]
gi|158278050|gb|EDP03816.1| splicing factor [Chlamydomonas reinhardtii]
Length = 647
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 104/210 (49%), Gaps = 27/210 (12%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVL-GYPLQVDFAL 112
P V+RLRGLPF E DV +FF ++ V+ + + TGE + L D
Sbjct: 23 PKSTVLRLRGLPFSAGEDDVRQFFADFEVATVVIGKRAGRSTGEGYVQLDSVAAAADAIA 82
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ +RQ +G RY+EVF S + A + V +RG +
Sbjct: 83 KLHRQTLGHRYIEVFESTEADLATAKSLSVDRMRGF-----------------------V 119
Query: 173 LRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+R RGLP+++ D+++FF V + + T DGRPTGEAFVE E + A+
Sbjct: 120 IRCRGLPYTSTAQDVLNFFGADVPIVRGIEGVVFTYAPDGRPTGEAFVELQTEEAQREAL 179
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
K + +LGSRYIELF S+ +M +A+ + R
Sbjct: 180 KKHKESLGSRYIELFVSTKVDMIQAIQQNR 209
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+G S + +LRLRGLPFSAG+DD+ FF DF E + + GR TGE +V+ +
Sbjct: 17 DGVPSVPKSTVLRLRGLPFSAGEDDVRQFFADF---EVATVVIGKRAGRSTGEGYVQLDS 73
Query: 222 AEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALS 256
+ A+AK R TLG RYIE+F S+ ++ A S
Sbjct: 74 VAAAADAIAKLHRQTLGHRYIEVFESTEADLATAKS 109
>gi|52346028|ref|NP_001005057.1| epithelial splicing regulatory protein 1 [Xenopus (Silurana)
tropicalis]
gi|82182765|sp|Q6DEZ7.1|ESRP1_XENTR RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|49899931|gb|AAH76946.1| MGC89324 protein [Xenopus (Silurana) tropicalis]
Length = 687
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
++R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 330
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I D RPTG+AFV FA E ++ A+ K
Sbjct: 331 MRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNALKK 390
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 391 HKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF V +LFV + +N+ TG+AF + A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L+++++ +G+RY+E+FRS E + + N S P IP D
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEV-QQVLNRYSSAPLIPLPTPPIIPVLPQPFIPPVNVRD 446
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI++F +F + +H+ +N GRP+G++F++
Sbjct: 447 ----------CIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQM 496
Query: 220 ANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + A K + T+ RY+E+F S EEM+ L G
Sbjct: 497 KSADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 536
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ EF HG+ +V ++ + +G++F
Sbjct: 440 PPVNVRDCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMV----LNHQGRPSGDSFIQ 495
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
+ + A Q+ +++ M RYVEVF+ +E + + G SP
Sbjct: 496 MKSADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 545
>gi|26325168|dbj|BAC26338.1| unnamed protein product [Mus musculus]
Length = 841
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L V +NN G P AL+R
Sbjct: 150 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 206
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 207 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRS 266
Query: 167 -AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 267 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDA 326
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 327 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 358
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 275 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 334
Query: 115 NRQNMGRRYVEVFRSKRQEYY-------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
++Q MG R+++V ++ K + N D R + EG+ S+
Sbjct: 335 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQR---------ELVLNPEGEVSS 385
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ +PFS K D++ F + + E ++H+ ++++G+ G+A V+F +D+
Sbjct: 386 AKV-CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHK 444
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDE 253
+ R L R + + E+M E
Sbjct: 445 SEHLHRKKLNGREAFVHIVTLEDMRE 470
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 766 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 825
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 826 LNDR-PIGSRKVKL 838
>gi|211830818|gb|AAH26891.2| Rbm12 protein [Mus musculus]
Length = 887
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L V +NN G P AL+R
Sbjct: 191 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 247
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 248 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRS 307
Query: 167 -AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 308 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDA 367
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 368 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 399
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 20/206 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 316 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 375
Query: 115 NRQNMGRRYVEVFRSKRQEYY-------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
++Q MG R+++V ++ K + N D R + EG+ S+
Sbjct: 376 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQR---------ELVLNPEGEVSS 426
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F +D+
Sbjct: 427 AKV-CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHK 485
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDE 253
+ R L R + + E+M E
Sbjct: 486 SEHLHRKKLNGREAFVHIVTLEDMRE 511
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 812 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 871
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 872 LNDR-PIGSRKVKL 884
>gi|9624998|ref|NP_062543.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
gi|74099697|ref|NP_001027565.1| heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
gi|197100479|ref|NP_001125156.1| heterogeneous nuclear ribonucleoprotein H2 [Pongo abelii]
gi|302565696|ref|NP_001180922.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|350536397|ref|NP_001233423.1| heterogeneous nuclear ribonucleoprotein H2 [Pan troglodytes]
gi|109131568|ref|XP_001094080.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Macaca mulatta]
gi|296236002|ref|XP_002763136.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Callithrix jacchus]
gi|332254772|ref|XP_003276506.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Nomascus
leucogenys]
gi|390480025|ref|XP_003735831.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Callithrix
jacchus]
gi|403298789|ref|XP_003940188.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Saimiri boliviensis boliviensis]
gi|403298791|ref|XP_003940189.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Saimiri boliviensis boliviensis]
gi|426396685|ref|XP_004064561.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 1
[Gorilla gorilla gorilla]
gi|426396687|ref|XP_004064562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 2
[Gorilla gorilla gorilla]
gi|426396689|ref|XP_004064563.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Gorilla gorilla gorilla]
gi|2500576|sp|P55795.1|HNRH2_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=FTP-3; AltName:
Full=Heterogeneous nuclear ribonucleoprotein H';
Short=hnRNP H'
gi|75070864|sp|Q5RD26.1|HNRH2_PONAB RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|1684915|gb|AAB64202.1| FTP3 [Homo sapiens]
gi|55727150|emb|CAH90331.1| hypothetical protein [Pongo abelii]
gi|119623269|gb|EAX02864.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|120660030|gb|AAI30346.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|120660336|gb|AAI30344.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Homo sapiens]
gi|168277748|dbj|BAG10852.1| heterogeneous nuclear ribonucleoprotein H' [synthetic construct]
gi|313883006|gb|ADR82989.1| heterogeneous nuclear ribonucleoprotein H2 (H') (HNRNPH2),
transcript variant 2 [synthetic construct]
gi|313883348|gb|ADR83160.1| heterogeneous nuclear ribonucleoprotein H2 (H') (HNRNPH2),
transcript variant 2 [synthetic construct]
gi|343958876|dbj|BAK63293.1| heterogeneous nuclear ribonucleoprotein H' [Pan troglodytes]
gi|380812318|gb|AFE78033.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|384946774|gb|AFI36992.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
gi|410264162|gb|JAA20047.1| RPL36A-HNRNPH2 readthrough [Pan troglodytes]
gi|410303792|gb|JAA30496.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410303794|gb|JAA30497.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410355365|gb|JAA44286.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
gi|410355367|gb|JAA44287.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Pan troglodytes]
Length = 449
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|148223399|ref|NP_001079524.1| epithelial splicing regulatory protein 1 [Xenopus laevis]
gi|82241595|sp|Q7ZY29.1|ESRP1_XENLA RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|27694832|gb|AAH44002.1| MGC53361 protein [Xenopus laevis]
Length = 688
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
++R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 227 IIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 286
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 287 HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 330
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I D RPTG+AFV FA E ++ A+ K
Sbjct: 331 MRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNALKK 390
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 391 HKELLGKRYIELFRSTAAEVQQVLNR 416
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 30/220 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF V +LFV + +N+ TG+AF + A
Sbjct: 328 IVRMRGLPFTATAEEVLAFFGQQCPVTGGKEGILFVTYPDNRPTGDAFVLFACEEYAQNA 387
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS----------PHRSIPRAKSHD 161
L+++++ +G+RY+E+FRS E + + N S P IP D
Sbjct: 388 LKKHKELLGKRYIELFRSTAAEV-QQVLNRYSSAPLIPLPTPPIIPVLPQPFIPPVNVRD 446
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+RLRGLP++A +DI++F +F + +H+ +N GRP+G++F++
Sbjct: 447 ----------CIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMVLNHQGRPSGDSFIQM 496
Query: 220 ANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + A K + T+ RY+E+F S EEM+ L G
Sbjct: 497 KSADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 536
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 54 PPFPV---VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCV 101
PP V +RLRGLP+ T D+ EF HG+ +V ++ + +G++F
Sbjct: 440 PPVNVRDCIRLRGLPYAATIEDILEFLGEFSADIRTHGVHMV----LNHQGRPSGDSFIQ 495
Query: 102 LGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
+ + A Q+ +++ M RYVEVF+ +E + + G SP
Sbjct: 496 MKSADRAYLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 545
>gi|148674224|gb|EDL06171.1| mCG5227, isoform CRA_a [Mus musculus]
gi|148674225|gb|EDL06172.1| mCG5227, isoform CRA_a [Mus musculus]
Length = 773
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L V +NN G P AL+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 363 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRS 422
Query: 167 -AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 423 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDA 482
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 483 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 20/205 (9%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRN 115
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R+
Sbjct: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCRH 491
Query: 116 RQNMGRRYVEVFRSKRQEYY-------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
+Q MG R+++V ++ K + N D R + EG+ S+
Sbjct: 492 KQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQR---------ELVLNPEGEVSSA 542
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+ +PFS K D++ F + + E ++H+ ++++G+ G+A V+F +D+ +
Sbjct: 543 KV-CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHKS 601
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 602 EHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
>gi|190402267|gb|ACE77677.1| RNA binding motif protein 12, isoform 1 (predicted) [Sorex araneus]
Length = 1520
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +GSR+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGSRFIQVHPITKKGMLEKI 514
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 491 HKQYMGSRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-- 229
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 911 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVFD 970
Query: 230 AKDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 971 LNDR-PIGSRKVKLM 984
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP +D+ FF GL I D VH GEAF V + R
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG-GVHIVGGELGEAFIVFATDEDARLGMMRTGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAK 158
+ V + S + E I E+S R + + IP A
Sbjct: 63 TIKGSKVTLLLSSKTEMQNMI--ELSRRRFETANLDIPPAN 101
>gi|156401541|ref|XP_001639349.1| predicted protein [Nematostella vectensis]
gi|156226477|gb|EDO47286.1| predicted protein [Nematostella vectensis]
Length = 341
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 105/205 (51%), Gaps = 23/205 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ DVA FF GL+I ++ + GEAF D AL+R
Sbjct: 12 VLRARGLPWQASDQDVANFFRGLNIPRGGIAFCLNMQGRRNGEAFIRFENGDHRDLALRR 71
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+++ Q++ + I R S S I+R
Sbjct: 72 HKMHLGTRYIEVYKASAQDFLR-----------------IVRGMSIAANFVSTNAEVIIR 114
Query: 175 LRGLPFSAGKDDIMDFFKDFV---LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPFS D++ FF D V E I + +G+ TG+AFV F E +AA+ K
Sbjct: 115 MRGLPFSTKAADVVRFFGDDVPVYRGEGGILMVRGRNGKATGDAFVLFETEEHGRAALKK 174
Query: 232 DRMTLGSRYIELFPSSHEEMDEALS 256
R LGSRY+ELF SS E+ + LS
Sbjct: 175 HREVLGSRYVELFRSSQSEVQQVLS 199
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 38/230 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV------DVLFVH-KNNKFTGEAFCVLGYPLQVDF 110
++R+RGLPF DV FF G D+ +L V +N K TG+AF +
Sbjct: 112 IIRMRGLPFSTKAADVVRFF-GDDVPVYRGEGGILMVRGRNGKATGDAFVLFETEEHGRA 170
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPR-------------- 156
AL+++R+ +G RYVE+FRS + E + +++ + G P +P
Sbjct: 171 ALKKHREVLGSRYVELFRSSQSEVQQVLSSLSLFMMGVPPLAMLPNPLPQHPPFHPPMFL 230
Query: 157 -------AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNS 207
A KD LRLRGLPFSA D++DF K+ ++ +H+ N+
Sbjct: 231 PGPVPYAANGGSNAKDC------LRLRGLPFSATVQDVLDFLKEHAAYVAPGGVHMVYNT 284
Query: 208 DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALS 256
GRP+G+A+V+ + + + AA + + +G RYIE+FP S+ ++ ++
Sbjct: 285 QGRPSGDAYVQLLSPDFAAAAANELHKHHMGERYIEVFPCSNSDISAVIA 334
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 28/135 (20%)
Query: 32 GTPPSSSFMYNP----PPAYGYVSQPPPFP-----------VVRLRGLPFDCTEVDVAEF 76
G PP + + NP PP + + P P P +RLRGLPF T DV +F
Sbjct: 207 GVPPLA-MLPNPLPQHPPFHPPMFLPGPVPYAANGGSNAKDCLRLRGLPFSATVQDVLDF 265
Query: 77 F--HGLDIV--DVLFVHKNN-KFTGEAFCVLGYPLQVDFAL----QRNRQNMGRRYVEVF 127
H + V V+ + +G+A+ L P DFA + ++ +MG RY+EVF
Sbjct: 266 LKEHAAYVAPGGVHMVYNTQGRPSGDAYVQLLSP---DFAAAAANELHKHHMGERYIEVF 322
Query: 128 RSKRQEYYKAIANEV 142
+ IA+
Sbjct: 323 PCSNSDISAVIASST 337
>gi|26330362|dbj|BAC28911.1| unnamed protein product [Mus musculus]
Length = 992
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L V +NN G P AL+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 363 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRS 422
Query: 167 -AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 423 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDA 482
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 483 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYY-------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
++Q MG R+++V ++ K + N D R + EG+ S+
Sbjct: 491 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQR---------ELVLNPEGEVSS 541
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ +PFS K D++ F + + E ++H+ ++++G+ G+A V+F +D+
Sbjct: 542 AKV-CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHK 600
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDE 253
+ R L R + + E+M E
Sbjct: 601 SEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 917 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 976
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 977 LNDR-PIGSRKVKL 989
>gi|83320105|ref|NP_001032746.1| RNA-binding protein 12 [Rattus norvegicus]
gi|31324614|gb|AAP48569.1| swan [Rattus norvegicus]
gi|149030841|gb|EDL85868.1| rCG37481, isoform CRA_a [Rattus norvegicus]
gi|149030844|gb|EDL85871.1| rCG37481, isoform CRA_a [Rattus norvegicus]
Length = 1032
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L V +NN G P AL+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 363 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRS 422
Query: 167 -AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 423 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDA 482
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 483 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 20/206 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYY-------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
++Q MG R+++V ++ K + N D R + EG+ S+
Sbjct: 491 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQR---------EMVLNPEGEVSS 541
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F +D+
Sbjct: 542 AKV-CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHK 600
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDE 253
+ R L R + + E+M E
Sbjct: 601 SEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 957 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 1016
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 1017 LNDR-PIGSRKVKL 1029
>gi|344246677|gb|EGW02781.1| RNA-binding protein 12 [Cricetulus griseus]
Length = 997
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L V +NN G P AL+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 363 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRS 422
Query: 167 -AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 423 RSPHEAGYCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDA 482
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 483 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYY-------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
++Q MG R+++V ++ K + N D R + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQR---------EMVLNPEGDVSS 541
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ +PFS K D++ F + + E ++H+ ++++G+ G+A V+F +D++
Sbjct: 542 AKV-CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDARK 600
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDE 253
+ R L R + + E+M E
Sbjct: 601 SEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 922 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 981
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 982 LNDR-PIGSRKVKL 994
>gi|115496520|ref|NP_001069476.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|109892458|sp|Q3SZF3.1|HNRH2_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein H2;
Short=hnRNP H2; AltName: Full=Heterogeneous nuclear
ribonucleoprotein H'; Short=hnRNP H'
gi|74354329|gb|AAI02895.1| Heterogeneous nuclear ribonucleoprotein H2 (H') [Bos taurus]
Length = 449
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|114155120|ref|NP_083673.3| RNA-binding protein 12 [Mus musculus]
gi|114155125|ref|NP_733486.2| RNA-binding protein 12 [Mus musculus]
gi|262527571|sp|Q8R4X3.3|RBM12_MOUSE RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|26348755|dbj|BAC38017.1| unnamed protein product [Mus musculus]
gi|30851612|gb|AAH52473.1| RNA binding motif protein 12 [Mus musculus]
Length = 992
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L V +NN G P AL+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 363 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRS 422
Query: 167 -AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 423 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDA 482
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 483 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYY-------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
++Q MG R+++V ++ K + N D R + EG+ S+
Sbjct: 491 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQR---------ELVLNPEGEVSS 541
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ +PFS K D++ F + + E ++H+ ++++G+ G+A V+F +D+
Sbjct: 542 AKV-CAHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDAHK 600
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDE 253
+ R L R + + E+M E
Sbjct: 601 SEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 917 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 976
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 977 LNDR-PIGSRKVKL 989
>gi|19070198|gb|AAL83754.1| SWAN [Mus musculus]
gi|21666374|gb|AAM73683.1| swan [Mus musculus]
gi|21666376|gb|AAM73684.1| swan [Mus musculus]
Length = 1003
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L V +NN G P AL+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 363 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRS 422
Query: 167 -AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 423 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDA 482
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 483 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 20/206 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYY-------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
++Q MG R+++V ++ K + N D R + EG+ S+
Sbjct: 491 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQR---------ELVLNPEGEVSS 541
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F +D+
Sbjct: 542 AKV-CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHK 600
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDE 253
+ R L R + + E+M E
Sbjct: 601 SEHLHRKKLNGREAFVHIVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 928 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 987
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 988 LNDR-PIGSRKVKLV 1001
>gi|229368727|gb|ACQ63010.1| RNA binding motif protein 12, isoform 2 (predicted) [Dasypus
novemcinctus]
Length = 900
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV EFFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+S+H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENSVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHIVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 825 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 884
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 885 LNDR-PIGSRKVKL 897
>gi|426257857|ref|XP_004022538.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Ovis aries]
gi|146231796|gb|ABQ12973.1| heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|296471005|tpg|DAA13120.1| TPA: heterogeneous nuclear ribonucleoprotein H2 [Bos taurus]
gi|440901707|gb|ELR52599.1| Heterogeneous nuclear ribonucleoprotein H2 [Bos grunniens mutus]
Length = 449
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|301788126|ref|XP_002929479.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Ailuropoda melanoleuca]
gi|344306831|ref|XP_003422087.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Loxodonta africana]
Length = 432
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|410989009|ref|XP_004000762.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Felis catus]
Length = 432
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|149755198|ref|XP_001493828.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Equus
caballus]
gi|291393212|ref|XP_002713068.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Oryctolagus
cuniculus]
gi|291408077|ref|XP_002720410.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Oryctolagus cuniculus]
gi|281341597|gb|EFB17181.1| hypothetical protein PANDA_019663 [Ailuropoda melanoleuca]
Length = 449
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|74007970|ref|XP_861916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 3
[Canis lupus familiaris]
gi|345807788|ref|XP_862053.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 isoform 7
[Canis lupus familiaris]
Length = 449
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|348570626|ref|XP_003471098.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Cavia
porcellus]
Length = 449
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|432101976|gb|ELK29797.1| Heterogeneous nuclear ribonucleoprotein H2 [Myotis davidii]
Length = 449
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|384946772|gb|AFI36991.1| heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
Length = 449
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|47086853|ref|NP_997754.1| heterogeneous nuclear ribonucleoprotein H1, like [Danio rerio]
gi|28278402|gb|AAH44161.1| Zgc:85960 [Danio rerio]
gi|182891430|gb|AAI64507.1| Zgc:85960 protein [Danio rerio]
Length = 407
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ C+ +V+ FF G I + F + + + +GEAF L + A+
Sbjct: 8 VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAV 67
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG RYVEVF+S E + + + P + G+
Sbjct: 68 KKDRESMGHRYVEVFKSNNVEMDWVLKHTGPNC---------PETEG----------DGL 108
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ + ++ A+ K
Sbjct: 109 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKH 168
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 169 KERIGHRYIEIFKSSRAEV 187
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 35/223 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL++
Sbjct: 108 LVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKK 167
Query: 115 NRQNMGRRYVEVFRSKRQE---YYKAIANEVSDVR---------GGSPHRSIPRAKSHD- 161
+++ +G RY+E+F+S R E +Y+ + R GG + + R S D
Sbjct: 168 HKERIGHRYIEIFKSSRAEVRTHYEPPRKGMGMQRPGPYDRPSGGGRGYNGMSRGGSFDR 227
Query: 162 ----------------EGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
+G + TG + +RGLP+ A + DI +FF L+ +HI
Sbjct: 228 MRRGGYGGGVSDGRYGDGGNFQSTTGHCVHMRGLPYRATEPDIYNFFSP--LNPVRVHIE 285
Query: 205 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ DGR TGEA VEFA ED+ AAM+ D+ + RY+ELF +S
Sbjct: 286 IGPDGRVTGEADVEFATHEDAVAAMSNDKANMQHRYVELFLNS 328
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S +++ FF +S + +IH T +GRP+GEAFVE + +D K A+
Sbjct: 8 VVRVRGLPWSCSAEEVSRFFSGCKISSNGSAIHFTYTREGRPSGEAFVELESEDDLKIAV 67
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RY+E+F S++ EMD L
Sbjct: 68 KKDRESMGHRYVEVFKSNNVEMDWVL 93
>gi|395861473|ref|XP_003803009.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Otolemur
garnettii]
Length = 432
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|284519716|ref|NP_001165217.1| RNA-binding protein 12 [Equus caballus]
Length = 928
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 117/222 (52%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S + K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPNGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++S+G+ G+A V+F + +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDSNGQGLGQALVQFKSEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTVEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 853 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 912
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 913 LNDR-PIGSRKVKL 925
>gi|417401138|gb|JAA47465.1| Putative splicing factor hnrnp-f [Desmodus rotundus]
Length = 449
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|354477974|ref|XP_003501192.1| PREDICTED: RNA-binding protein 12 [Cricetulus griseus]
Length = 1463
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L V +NN G P AL+R
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 363 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRS 422
Query: 167 -AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 423 RSPHEAGYCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDA 482
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 483 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMVLNPEGDVSSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E ++H+ ++++G+ G+A V+F +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDESAVHVLVDNNGQGLGQALVQFKTEDDARKSEHLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHIVTLEDMRE 626
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 854 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 913
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 914 LNDR-PIGSRKVKLM 927
>gi|148886840|sp|Q8VHV7.2|HNRH1_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein H;
Short=hnRNP H; AltName: Full=Ratsg1; Contains: RecName:
Full=Heterogeneous nuclear ribonucleoprotein H,
N-terminally processed
Length = 449
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF +++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI DGR TGEA VEFA ED+ AAM+K
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|184185561|gb|ACC68959.1| RNA-binding protein 12 (predicted) [Rhinolophus ferrumequinum]
Length = 946
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 116/222 (52%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAVENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEPGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+++ + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALSRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 20/192 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALSR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYY-------KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA 167
++Q MG R+++V ++ K + N D R + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQR---------EMMLNPEGDVSS 541
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++
Sbjct: 542 TKV-CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK 600
Query: 228 AMAKDRMTLGSR 239
+ R L R
Sbjct: 601 SERLHRKKLNGR 612
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 871 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 930
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 931 LNDR-PIGSRKVKL 943
>gi|432909348|ref|XP_004078165.1| PREDICTED: epithelial splicing regulatory protein 1-like [Oryzias
latipes]
Length = 656
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 28/212 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 245 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 304
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + D+ I+R
Sbjct: 305 HKHHMGNRYIEVYKATGEDFLK--------IAGGTTNEVAMFLSREDQI--------IVR 348
Query: 175 LRGLPFSAGKDDIMDFF--KDFVLS-------EDSIHITMNSDGRPTGEAFVEFANAEDS 225
+RGLPF+A + ++ FF KD + +D I DGRPTG+AFV F+ E +
Sbjct: 349 MRGLPFTATYEQVLAFFSPKDGLNETCPVSGGKDGILFVRYPDGRPTGDAFVLFSCEEHA 408
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 409 LCALRKHKEILGKRYIELFKSTAAEVQQVLNR 440
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----------VLFV-HKNNKFTGEAFCVLGYP 105
+VR+RGLPF T V FF D ++ +LFV + + + TG+AF +
Sbjct: 346 IVRMRGLPFTATYEQVLAFFSPKDGLNETCPVSGGKDGILFVRYPDGRPTGDAFVLFSCE 405
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIPRAKSHDEGK 164
AL+++++ +G+RY+E+F+S E + + S + +P + S
Sbjct: 406 EHALCALRKHKEILGKRYIELFKSTAAEVQQVLNRYSSTPLIPVAPAPLLSMLPSVSLLP 465
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMN 206
LRLRGLP++A +DI+ F +F + +H+ +N
Sbjct: 466 PPGCVRDCLRLRGLPYTASIEDILAFLGEFTHDIRPHGVHMVLN 509
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%)
Query: 137 AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL 196
A+ +E S +P R + +S K+ ++R RGLP+ + DI FF+ +
Sbjct: 210 ALLSEHSCNAFSNPERVNEKFESGTCKKEKVCDNTVIRARGLPWQSSDQDIARFFRGLNI 269
Query: 197 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
++ + +N+ GR GEA V F + E A+ + + +G+RYIE++ ++ E+
Sbjct: 270 AKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGNRYIEVYKATGED 323
>gi|37360080|dbj|BAC98018.1| mKIAA0765 protein [Mus musculus]
Length = 569
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV EFFHGL D V +L H +NN G P AL+R
Sbjct: 217 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 273
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDS-- 166
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 274 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRS 333
Query: 167 -AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ H + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 334 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDA 393
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 394 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 425
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 99/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 342 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADYKAALCR 401
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG+ S+
Sbjct: 402 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQRELVLNPEGEVSSAKV-C 456
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F +D+ +
Sbjct: 457 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKTEDDAHKSEHLH 516
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 517 RKKLNGREAFVHIVTLEDMRE 537
>gi|324504848|gb|ADY42090.1| Heterogeneous nuclear ribonucleoprotein H2 [Ascaris suum]
Length = 282
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 111/202 (54%), Gaps = 18/202 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLD--IVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VV+ RGLP+ CTE ++ FF D IV + L +++ + +GEAF ++AL R
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIVKITLTKNRDARPSGEAFVAFNNNEDYEYALTR 115
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++Q+MG+RY+EVF + + I +R G S+P G+D T I+R
Sbjct: 116 DKQHMGKRYIEVFPASASDVEYNITGPERRLRMGI---SLP-------GRD----TSIVR 161
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVEFANAEDSKAAMAKDR 233
LRGLP+ D+I FF ++ + I + + G+ TG+AFV F + + A+ ++R
Sbjct: 162 LRGLPYGCTNDEITRFFHPIPIAANGIVLPYDHRSGKATGDAFVAFYEPDSAARALERNR 221
Query: 234 MTLGSRYIELFPSSHEEMDEAL 255
+ RYIE+FPSS+ EM AL
Sbjct: 222 NNIQHRYIEVFPSSYGEMLRAL 243
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
+VRLRGLP+ CT ++ FFH + I + + + H++ K TG+AF P AL+
Sbjct: 159 IVRLRGLPYGCTNDEITRFFHPIPIAANGIVLPYDHRSGKATGDAFVAFYEPDSAARALE 218
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANE 141
RNR N+ RY+EVF S E +A+ E
Sbjct: 219 RNRNNIQHRYIEVFPSSYGEMLRALELE 246
>gi|242007190|ref|XP_002424425.1| Heterogeneous nuclear ribonucleoprotein F, putative [Pediculus
humanus corporis]
gi|212507825|gb|EEB11687.1| Heterogeneous nuclear ribonucleoprotein F, putative [Pediculus
humanus corporis]
Length = 412
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 111/203 (54%), Gaps = 24/203 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
V+++RGLP+ T+ ++ +FF+ + + + + + + +GEA+ + ++ AL
Sbjct: 10 VIKMRGLPWSTTDEEILKFFNNCKVKNGKEGVHIIMTREGRPSGEAYVEMETDQDIEEAL 69
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG RY+EVF+SKR E I S++ ++A+ G
Sbjct: 70 KKDRDYMGTRYMEVFKSKRSEMDWVIKRSGSNL-------------------ETALDDGC 110
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I FF + + I + M+S GR TGEA+V+F N + ++ A+ K
Sbjct: 111 VRLRGLPFGCSKEEIAQFFTGLEIVPNGITLPMDSRGRSTGEAYVQFKNKDIAEKALLKH 170
Query: 233 RMTLGSRYIELFPSSHEEMDEAL 255
+ + RYIE+F SS E+ + +
Sbjct: 171 KEKIAHRYIEIFRSSLGEICQEI 193
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S ++I+ FF + + ++ +HI M +GRP+GEA+VE +D + A+
Sbjct: 10 VIKMRGLPWSTTDEEILKFFNNCKVKNGKEGVHIIMTREGRPSGEAYVEMETDQDIEEAL 69
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
KDR +G+RY+E+F S EMD + R
Sbjct: 70 KKDRDYMGTRYMEVFKSKRSEMDWVIKR 97
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
S+ H + +RGLPF A K D+ DFF+ + SI + DGRP+GEA VEF +D+
Sbjct: 299 SSAHC--IHMRGLPFRATKQDVADFFRPVIPL--SIDLLTEDDGRPSGEADVEFRTHDDA 354
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
AM+K++ + RYIELF +S
Sbjct: 355 VLAMSKNKNHMQHRYIELFLNS 376
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++A+FF GL+IV L + + TGEA+ + AL +
Sbjct: 110 CVRLRGLPFGCSKEEIAQFFTGLEIVPNGITLPMDSRGRSTGEAYVQFKNKDIAEKALLK 169
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIA 139
+++ + RY+E+FRS E + I
Sbjct: 170 HKEKIAHRYIEIFRSSLGEICQEIG 194
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFA 111
P + +RGLPF T+ DVA+FF + + + L + + +GEA A
Sbjct: 298 PSSAHCIHMRGLPFRATKQDVADFFRPVIPLSIDLLTEDDGRPSGEADVEFRTHDDAVLA 357
Query: 112 LQRNRQNMGRRYVEVF 127
+ +N+ +M RY+E+F
Sbjct: 358 MSKNKNHMQHRYIELF 373
>gi|432879057|ref|XP_004073431.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like [Oryzias
latipes]
Length = 413
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 41/229 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL++
Sbjct: 107 LVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKK 166
Query: 115 NRQNMGRRYVEVFRSKRQE---YYKAIANEVSDVR--------GGSPHRSIPRAKSHD-- 161
+++ +G RY+E+F+S R E +Y+ + R GG + + R S+D
Sbjct: 167 HKERIGHRYIEIFKSCRAEVRTHYEPQRKPMGMQRPSPYDRPSGGRGYNMMGRGASYDRM 226
Query: 162 ----------------------EGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSE 198
G TG + +RGLP+ A + DI +FF L+
Sbjct: 227 RRGGYGGGGGGGGGVSDGRYGDSGSSFQSTTGHCVHMRGLPYRATETDIYNFFSP--LNP 284
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+HI + DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 285 VRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 333
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ C+ +V FF G I++ + F + + + +GEAF + + A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEEDLKVAV 66
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + G+
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVMKHTGPNC-------------------PETAGDGL 107
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ + ++ A+ K
Sbjct: 108 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKKH 167
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F S E+
Sbjct: 168 KERIGHRYIEIFKSCRAEV 186
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDF-VLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S D++ FF +L+ S IH T +GRP+GEAFVE ED K A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEEDLKVAV 66
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD +
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVM 92
>gi|417413254|gb|JAA52964.1| Putative rna binding protein rbm12/swan, partial [Desmodus
rotundus]
Length = 960
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 318 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 374
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+K
Sbjct: 375 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSK 434
Query: 159 SHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 435 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 494
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 495 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 536
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 453 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 512
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 513 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVSSTKV-C 567
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 568 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 627
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 628 RKKLNGREAFVHIVTLEDMRE 648
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 81
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 82 TGGTIKGSKVTLLLSSKTEMQNMIELSR 109
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 885 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 944
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 945 LNDR-PIGSRKVKL 957
>gi|348564119|ref|XP_003467853.1| PREDICTED: RNA-binding protein 12-like [Cavia porcellus]
Length = 1467
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 117/226 (51%), Gaps = 24/226 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAVENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVGPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
E FVEF N D KAA+ + + +G+R+I++ P + + M E + R
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDTIR 518
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDTIRKRLQNFSYDQREMILNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSEHLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 858 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 917
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 918 LNDR-PIGSRKVKLM 931
>gi|41351452|gb|AAH65688.1| Rbm35b protein [Danio rerio]
Length = 711
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 106/209 (50%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D AL R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++ +MG RY+EV+++ +E+ K +NEV+ S +
Sbjct: 285 HKHHMGSRYIEVYKATGEEFLKIAGGTSNEVAQFL-------------------SKENQM 325
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANAEDSKAA 228
I+R+RGLPF+A D++ F D + DGRPTG+AFV FA E ++ A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ K + LG RYIELF S+ E+ + L+R
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 14/215 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-GLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T DV F + D +LFV + + + TG+AF + A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIPRAKSHDEGKDSAVHT 170
L++++Q +G+RY+E+FRS E + + +S + P P + T
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPPPPPMVSVPVLATPPFITT 445
Query: 171 G----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
G +RLRGLP++A +DI++F + + +H+ +N GRP+G+AF++ +A+
Sbjct: 446 GNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQMKSADR 505
Query: 225 S-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ A + + RY+E+F S EEM L G
Sbjct: 506 AFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVLMGG 540
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 157 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
A S E DS ++R RGLP+ + DI FFK +++ + + +N+ GR GEA
Sbjct: 213 ACSKTESVDSET---VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEAL 269
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
V F N+E A+ + + +GSRYIE++ ++ EE
Sbjct: 270 VRFINSEHRDMALDRHKHHMGSRYIEVYKATGEE 303
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--HGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
+RLRGLP+ D+ EF H +DI + +++ + +G+AF + +
Sbjct: 451 CIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQMKSADRAFMVA 510
Query: 113 QRNRQNMGR-RYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
Q+ + M + RYVEVF+ +E + + G SP
Sbjct: 511 QKCHKKMMKDRYVEVFQCSTEEMSFVLMGGTLNRSGLSP 549
>gi|284520924|ref|NP_001165219.1| RNA-binding protein 12 [Canis lupus familiaris]
Length = 923
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 848 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 907
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 908 LNDR-PIGSRKVKL 920
>gi|332029325|gb|EGI69308.1| RNA-binding protein fusilli [Acromyrmex echinatior]
Length = 677
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 25/210 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 190 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEHRDMALKR 249
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ V+ G H + R I+R
Sbjct: 250 HKHHMGARYIEVYKASGEDFIG-----VAGGTSGEAHAFLSRGAQ-----------VIVR 293
Query: 175 LRGLPFSAGKDDIMDFFK------DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ +++FF+ + ED + DGR TG+AFV FA ED+ A
Sbjct: 294 MRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDAVKA 353
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++K R +GSRYIELF S+ E+ + L+R
Sbjct: 354 LSKHRDCIGSRYIELFRSTTAEVQQVLNRA 383
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 20/218 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG----LDIVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+DC V EFF ++D VLFV K + + TG+AF +
Sbjct: 291 IVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 350
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL ++R +G RY+E+FRS E + + A + V P + S
Sbjct: 351 VKALSKHRDCIGSRYIELFRSTTAEVQQVLNRATDPKQVILPPPPIAQLPPLLPQHIITS 410
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP+ A + I++F + + +H+ N+ G+P+GEAF++ ++E
Sbjct: 411 GTRKDCVRLRGLPYEALVEHILEFMGEHSKNIVYQGVHMVYNAQGQPSGEAFIQM-DSEA 469
Query: 225 SKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALS 256
S A A R M G RYIE+F S ++M+ L+
Sbjct: 470 SAYACATQRHHRYMIYGKKQRYIEVFQCSGDDMNLVLT 507
>gi|40548306|ref|NP_954966.1| epithelial splicing regulatory protein 2 [Danio rerio]
gi|28279592|gb|AAH45439.1| RNA binding motif protein 35B [Danio rerio]
Length = 736
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D AL R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + ++ I+R
Sbjct: 285 HKHHMGSRYIEVYKATGEEFLK--------IAGGTSNEVAQFLSKENQM--------IIR 328
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D++ F D + DGRPTG+AFV FA E ++ A+ K
Sbjct: 329 MRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNALKK 388
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 389 HKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 14/215 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-GLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T DV F + D +LFV + + + TG+AF + A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIPRAKSHDEGKDSAVHT 170
L++++Q +G+RY+E+FRS E + + +S + P P + T
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPPPPPMVSVPVLATPPLITT 445
Query: 171 G----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
G +RLRGLP++A +DI++F + + +H+ +N GRP+G+AF++ +A+
Sbjct: 446 GNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQMKSADR 505
Query: 225 S-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ A + + RY+E+F S EEM L G
Sbjct: 506 AFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVLMGG 540
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 157 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
A S E DS ++R RGLP+ + DI FFK +++ + + +N+ GR GEA
Sbjct: 213 ACSKTEAVDSET---VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEAL 269
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
V F N+E A+ + + +GSRYIE++ ++ EE
Sbjct: 270 VRFINSEHRDMALDRHKHHMGSRYIEVYKATGEE 303
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 41/61 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++R++GLP++AG DI+ FF+ + L DS+ + N G+ +GEA V F + + ++ A+A
Sbjct: 659 ALVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAVA 718
Query: 231 K 231
+
Sbjct: 719 E 719
Score = 37.4 bits (85), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--HGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
+RLRGLP+ D+ EF H +DI + +++ + +G+AF + +
Sbjct: 451 CIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQMKSADRAFMVA 510
Query: 113 QRNRQNMGR-RYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
Q+ + M + RYVEVF+ +E + + G SP
Sbjct: 511 QKCHKKMMKDRYVEVFQCSTEEMSFVLMGGTLNRSGLSP 549
>gi|301762096|ref|XP_002916483.1| PREDICTED: RNA-binding protein 12-like [Ailuropoda melanoleuca]
gi|281346062|gb|EFB21646.1| hypothetical protein PANDA_004540 [Ailuropoda melanoleuca]
Length = 923
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 848 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 907
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 908 LNDR-PIGSRKVKL 920
>gi|134047877|sp|Q7ZVR8.2|ESRP2_DANRE RecName: Full=Epithelial splicing regulatory protein 2; AltName:
Full=RNA-binding motif protein 35B; AltName:
Full=RNA-binding protein 35B
Length = 736
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D AL R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDMALDR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + ++ I+R
Sbjct: 285 HKHHMGSRYIEVYKATGEEFLK--------IAGGTSNEVAQFLSKENQM--------IIR 328
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D++ F D + DGRPTG+AFV FA E ++ A+ K
Sbjct: 329 MRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNALKK 388
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 389 HKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 109/215 (50%), Gaps = 14/215 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-GLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T DV F + D +LFV + + + TG+AF + A
Sbjct: 326 IIRMRGLPFTATPQDVLGFLGPECPVTDGTEGLLFVKYPDGRPTGDAFVLFACEEYAQNA 385
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIPRAKSHDEGKDSAVHT 170
L++++Q +G+RY+E+FRS E + + +S + P P + T
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPPPPPMVSVPVLATPPFITT 445
Query: 171 G----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
G +RLRGLP++A +DI++F + + +H+ +N GRP+G+AF++ +A+
Sbjct: 446 GNTRDCIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQMKSADR 505
Query: 225 S-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ A + + RY+E+F S EEM L G
Sbjct: 506 AFMVAQKCHKKMMKDRYVEVFQCSTEEMSFVLMGG 540
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 157 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
A S E DS ++R RGLP+ + DI FFK +++ + + +N+ GR GEA
Sbjct: 213 ACSKTEAVDSET---VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEAL 269
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
V F N+E A+ + + +GSRYIE++ ++ EE
Sbjct: 270 VRFINSEHRDMALDRHKHHMGSRYIEVYKATGEE 303
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 41/61 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++R++GLP++AG DI+ FF+ + L DS+ + N G+ +GEA V F + + ++ A+A
Sbjct: 659 ALVRMQGLPYNAGVKDILSFFQGYQLQADSVLVLYNWSGQRSGEALVTFPSEKAARRAVA 718
Query: 231 K 231
+
Sbjct: 719 E 719
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--HGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
+RLRGLP+ D+ EF H +DI + +++ + +G+AF + +
Sbjct: 451 CIRLRGLPYTAAIEDILEFMGEHTIDIKPHGVHMVLNQQGRPSGDAFIQMKSADRAFMVA 510
Query: 113 QRNRQNMGR-RYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
Q+ + M + RYVEVF+ +E + + G SP
Sbjct: 511 QKCHKKMMKDRYVEVFQCSTEEMSFVLMGGTLNRSGLSP 549
>gi|405952153|gb|EKC19997.1| Heterogeneous nuclear ribonucleoprotein H [Crassostrea gigas]
Length = 544
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 107/206 (51%), Gaps = 25/206 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVD----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
VVRLRGLP+ TE +V +FF ++IVD V F + + +GE F L V
Sbjct: 43 VVRLRGLPWSATESEVVKFFGEDVEIVDGEQGVHFTFSREGRPSGECFVELIDEDNVQRG 102
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+ + ++MG RY+EVFRSK+ E I K G+
Sbjct: 103 LKCHNKHMGNRYIEVFRSKKSEMDWVI-------------------KRAGPGQMPGSCEA 143
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RLRGLPF K++I FF + + I + + GR TGEA+V+FA+ E ++ A++K
Sbjct: 144 VVRLRGLPFGCSKEEIAQFFTGLEIVPNGIMLPEDRQGRSTGEAYVQFASQEIAEKALSK 203
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ +G RYIE+F S +E A+ +
Sbjct: 204 HKERIGHRYIEIFKSGMQEAQNAMGQ 229
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLPF A + DI DFF L+ + +GRPTGEA V+F D+ AM++
Sbjct: 391 VHMRGLPFQALESDIADFFSP--LTPVRVEFEFAPNGRPTGEANVDFKTHSDAVEAMSRH 448
Query: 233 RMTLGSRYIELFPSS 247
+ + RYIELF +S
Sbjct: 449 KKNMQHRYIELFLNS 463
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF E D+A+FF L V V F N + TGEA A+ R+++
Sbjct: 391 VHMRGLPFQALESDIADFFSPLTPVRVEFEFAPNGRPTGEANVDFKTHSDAVEAMSRHKK 450
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 451 NMQHRYIELF 460
>gi|328779875|ref|XP_397080.4| PREDICTED: epithelial splicing regulatory protein 2 [Apis
mellifera]
Length = 1215
Score = 110 bits (275), Expect = 6e-22, Method: Composition-based stats.
Identities = 69/210 (32%), Positives = 107/210 (50%), Gaps = 25/210 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 757 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFVNKEHRDMALKR 816
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ +A S G H + R I+R
Sbjct: 817 HKHHMGGRYIEVYKASGEDFV-GVAGGTS----GEAHAFLSRGAQV-----------IVR 860
Query: 175 LRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ ++ FF + ED + DGR TG+AFV FA ED+ A
Sbjct: 861 MRGLPYDCVAKQVVXFFLSGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDAVKA 920
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++K R +GSRYIELF S+ E+ + L+R
Sbjct: 921 LSKHRDCIGSRYIELFRSTIAEVQQVLNRA 950
Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 20/218 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+DC V FF H LD D VLFV K + + TG+AF +
Sbjct: 858 IVRMRGLPYDCVAKQVVXFFLSGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 917
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL ++R +G RY+E+FRS E + + A + V +P S
Sbjct: 918 VKALSKHRDCIGSRYIELFRSTIAEVQQVLNRAIDPKQVVLPTPPIPQLPPIVPQHIITS 977
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP+ A + I++F + + +H+ N+ G+P+GEAF++ ++E
Sbjct: 978 GTRKDCVRLRGLPYEALVEHILEFMGEHSKNIVYQGVHMVYNAQGQPSGEAFIQM-DSES 1036
Query: 225 SKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALS 256
S A A R M G RYIE+F S ++M+ L+
Sbjct: 1037 SAYACASQRHHRYMIYGKKQRYIEVFQCSGDDMNLVLT 1074
>gi|431894345|gb|ELK04145.1| RNA-binding protein 12 [Pteropus alecto]
Length = 899
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVSSTKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A A +++ A+
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALCRNAQCRNARYRNAQC 605
Query: 233 R 233
R
Sbjct: 606 R 606
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 824 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 883
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 884 LNDR-PIGSRKVKL 896
>gi|410953920|ref|XP_003983616.1| PREDICTED: RNA-binding protein 12-like isoform 1 [Felis catus]
Length = 1482
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 873 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 932
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 933 LNDR-PIGSRKVKLM 946
>gi|449499514|ref|XP_002192774.2| PREDICTED: G-rich sequence factor 1 [Taeniopygia guttata]
Length = 402
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 107/220 (48%), Gaps = 31/220 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV LRGLPF TE D+A+FF GL I D+ F+++ ++ TGEAF P AL R+R+
Sbjct: 178 VVLLRGLPFTSTEEDIADFFSGLKITDIAFIYRGDRRTGEAFVQFATPEMAAKALLRHRE 237
Query: 118 NMGRRYVEVFRSKRQEY-------------------YKAIANE--VSDVRGGSPHRSIPR 156
MG RY+EV+ S++ + Y++I+ + D G I
Sbjct: 238 YMGSRYIEVYVSRKHQMQRHMPYSKQLTAYSRARREYESISEDRGWRDTGGSHAEGEINL 297
Query: 157 AKSHDEGKDSAVHT--------GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 208
++ E + + + + +RG P A DI++FF L I + NS
Sbjct: 298 SRERTESSRNVLESENTSSPPQHFVHMRGFPSQASAQDIINFFAP--LRPTRILVEYNSG 355
Query: 209 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248
G TGEA V F + ED+ AAMAKD + IELF + H
Sbjct: 356 GDATGEADVHFESHEDAVAAMAKDGSQMECSAIELFLNEH 395
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 28/199 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
+VR +G PF CTE DV FF I + ++++ + G+A L V AL
Sbjct: 79 LVRAQGFPFSCTEEDVLTFFDSCRIRNGENGIHFLLNRDGRRRGDALIELESKADVQRAL 138
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++ + MG RYV+VF EV D +S+ DE + A+ G+
Sbjct: 139 EKHLRYMGPRYVKVF-------------EVHDSDVEGLLQSL-----RDESQ--AMSDGV 178
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ LRGLPF++ ++DI DFF +++ I D R TGEAFV+FA E + A+ +
Sbjct: 179 VLLRGLPFTSTEEDIADFFSGLKITD--IAFIYRGD-RRTGEAFVQFATPEMAAKALLRH 235
Query: 233 RMTLGSRYIELFPSSHEEM 251
R +GSRYIE++ S +M
Sbjct: 236 REYMGSRYIEVYVSRKHQM 254
>gi|444729174|gb|ELW69601.1| RNA-binding protein 12 [Tupaia chinensis]
Length = 932
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 116/222 (52%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQTHPPSQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNTEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQAVVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
>gi|449494990|ref|XP_002198687.2| PREDICTED: epithelial splicing regulatory protein 1 [Taeniopygia
guttata]
Length = 766
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++ +MG RY+EV+++ +++ K +NEV+ K++ V
Sbjct: 286 HKHHMGNRYIEVYKATGEDFLKIAGGTSNEVAQFLS----------------KENQV--- 326
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
I+R+RGLPF+ ++++ FF ++ + D RPTG+AFV FA E ++ A
Sbjct: 327 IVRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 386
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ K + LG RYIELF S+ E+ + L+R
Sbjct: 387 LKKHKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 110/210 (52%), Gaps = 10/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF+ T +V FF V VLFV + +++ TG+AF + A
Sbjct: 327 IVRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + N S R +
Sbjct: 387 LKKHKDLLGKRYIELFRSTAAEV-QQVLNRYSSTPLIPLPRPPILPVLPQQFVPPTTIRD 445
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++A +DI++F +F + +H+ +N GRP+G+AF++ +A+ + AA
Sbjct: 446 CIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFLAA 505
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ T+ RY+E+F S EEM+ L G
Sbjct: 506 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ EF HG+ +V ++ + +G+AF + +
Sbjct: 446 CIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMV----LNHQGRPSGDAFIQMKSADRA 501
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
A Q+ +++ M RYVEVF+ +E + + G SP I
Sbjct: 502 FLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSPPPCI 548
>gi|20521648|dbj|BAA34485.2| KIAA0765 protein [Homo sapiens]
Length = 952
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 316 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 372
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 373 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSK 432
Query: 159 SHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 433 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 492
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 493 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 534
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 451 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 510
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 511 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 565
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 566 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 625
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 626 RKKLNGREAFVHVVTLEDMRE 646
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 24 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 79
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 80 TGGTIKGSKVTLLLSSKTEMQNMIELSR 107
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 877 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 936
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 937 LNDR-PIGSRKVKL 949
>gi|440906249|gb|ELR56534.1| Epithelial splicing regulatory protein 1, partial [Bos grunniens
mutus]
Length = 715
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 109/200 (54%), Gaps = 22/200 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 263 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 322
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 323 HKHHMGSRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 366
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 367 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 426
Query: 232 DRMTLGSRYIELFPSSHEEM 251
+ LG RYIELF S+ E+
Sbjct: 427 HKDLLGKRYIELFRSTAAEV 446
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 25/216 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 364 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 423
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAKSHDEGKD 165
L++++ +G+RY+E+FRS E ++ P + +P D
Sbjct: 424 LRKHKDLLGKRYIELFRSTAAEVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNIRD---- 479
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAE 223
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+
Sbjct: 480 ------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSAD 533
Query: 224 DS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ AA + T+ RY+E+F S EEM+ L G
Sbjct: 534 RAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 569
>gi|284004917|ref|NP_001164804.1| RNA-binding protein 12 [Oryctolagus cuniculus]
gi|217038336|gb|ACJ76629.1| RNA binding motif protein 12 (predicted) [Oryctolagus cuniculus]
Length = 940
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 116/223 (52%), Gaps = 25/223 (11%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH----RSIPRA 157
P AL+RNR M +RYVEV + +++ A I + S G H +++PR+
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQTHPPPPQTLPRS 412
Query: 158 KSHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 212
KS K S + H + L+GLPF A ++DFFK + EDSI+I +G+ T
Sbjct: 413 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 472
Query: 213 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
GE FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 GEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 515
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 432 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 491
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 492 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVNSAKV-C 546
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 547 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSEHLH 606
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + S E+M E
Sbjct: 607 RKKLNGREAFVHVVSLEDMRE 627
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 865 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 924
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 925 LNDR-PIGSRKVKLI 938
>gi|74136241|ref|NP_001028012.1| RNA-binding protein 12 [Macaca mulatta]
gi|30173333|sp|Q8SQ27.1|RBM12_MACMU RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|19070196|gb|AAL83753.1| SWAN [Macaca mulatta]
gi|355563178|gb|EHH19740.1| RNA-binding motif protein 12 [Macaca mulatta]
gi|355784534|gb|EHH65385.1| RNA-binding motif protein 12 [Macaca fascicularis]
gi|380808606|gb|AFE76178.1| RNA-binding protein 12 [Macaca mulatta]
gi|380808608|gb|AFE76179.1| RNA-binding protein 12 [Macaca mulatta]
gi|384944626|gb|AFI35918.1| RNA-binding protein 12 [Macaca mulatta]
gi|384944628|gb|AFI35919.1| RNA-binding protein 12 [Macaca mulatta]
Length = 932
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A N + P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQSHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
>gi|344279911|ref|XP_003411729.1| PREDICTED: RNA-binding protein 12-like isoform 1 [Loxodonta
africana]
Length = 936
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 112/212 (52%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV +FFHGL D V +L V +NN G P AL+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDSAV 168
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 363 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSLGPSGQAHPPPQTLPRSKSPSGQKRSRS 422
Query: 169 HTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 423 RSPQEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA 482
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 483 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 861 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 920
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 921 LNDR-PIGSRKVKLI 934
>gi|197100361|ref|NP_001125474.1| RNA-binding protein 12 [Pongo abelii]
gi|75070796|sp|Q5RBM8.1|RBM12_PONAB RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12
gi|55728164|emb|CAH90832.1| hypothetical protein [Pongo abelii]
Length = 932
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 859 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 918
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR + L+
Sbjct: 919 LNDR-PIGSRKVNLY 932
>gi|296199717|ref|XP_002747276.1| PREDICTED: RNA-binding protein 12 isoform 1 [Callithrix jacchus]
Length = 1460
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A N + P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQAHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVSSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 851 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 910
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 911 LNDR-PIGSRKVKLM 924
>gi|166831595|gb|ABY90120.1| RNA binding motif protein 12 (predicted) [Callithrix jacchus]
Length = 1460
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A N + P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQAHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVSSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 851 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 910
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 911 LNDR-PIGSRKVKLM 924
>gi|395736587|ref|XP_003780726.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H [Pongo abelii]
Length = 430
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 110/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 13 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 72
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVE F+S E + + + SP D+A + G
Sbjct: 73 KKDRETMGHRYVEGFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 113
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 114 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 173
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 174 KERIGHRYIEIFKSSRAEV 192
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFA 220
G D + ++++RGLP+S D++ FF D + + I +GRP+GEAFVE
Sbjct: 4 GTDRSGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELE 63
Query: 221 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+ ++ K A+ KDR T+G RY+E F S++ EMD L
Sbjct: 64 SEDEVKLALKKDRETMGHRYVEGFKSNNVEMDWVL 98
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 291 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 348
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 349 DKANMQHRYVELFLNS 364
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 291 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 350
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 351 ANMQHRYVELF 361
>gi|355757549|gb|EHH61074.1| Heterogeneous nuclear ribonucleoprotein H2 [Macaca fascicularis]
Length = 449
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 107/199 (53%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF ++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSNEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|344279913|ref|XP_003411730.1| PREDICTED: RNA-binding protein 12-like isoform 2 [Loxodonta
africana]
Length = 924
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 112/212 (52%), Gaps = 18/212 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF E DV +FFHGL D V +L V +NN G P AL+R
Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLSPQDTFEALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAKSHDEGKDSAV 168
NR M +RYVEV + +++ A I + S G H +++PR+KS K S
Sbjct: 363 NRMLMIQRYVEVSPATERQWVAAGGHITFKQSLGPSGQAHPPPQTLPRSKSPSGQKRSRS 422
Query: 169 HTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ + L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N
Sbjct: 423 RSPQEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA 482
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 483 DYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG S+
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVSSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 849 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 908
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 909 LNDR-PIGSRKVKLI 922
>gi|123704039|ref|NP_001074045.1| epithelial splicing regulatory protein 1 [Danio rerio]
gi|143360736|sp|A1L1G1.1|ESRP1_DANRE RecName: Full=Epithelial splicing regulatory protein 1; AltName:
Full=RNA-binding motif protein 35A; AltName:
Full=RNA-binding protein 35A
gi|120537378|gb|AAI29045.1| RNA binding motif protein 35A [Danio rerio]
Length = 714
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VIRARGLPWQSSDQDIARFFRGLNIAKGGAALCLNAQGRRNGEALVRFESEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + ++ I+R
Sbjct: 286 HKHHMGGRYIEVYKATGEDFLK--------IAGGTSNEVASFLSRENQI--------IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A + ++ FF D I DGRPTG+AFV F+ E ++ A+ K
Sbjct: 330 MRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNALKK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L++
Sbjct: 390 HKDMLGKRYIELFKSTAAEVQQVLNK 415
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 25/220 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH-GLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF+ T V +FF + D +LFV + + TG+AF + A
Sbjct: 327 IVRMRGLPFNATAEQVLQFFSPACPVTDGSEGILFVRFPDGRPTGDAFVLFSCEEHAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD----------VRGGSPHRSIPRAKSHD 161
L++++ +G+RY+E+F+S E + + S + +P +P+ +
Sbjct: 387 LKKHKDMLGKRYIELFKSTAAEVQQVLNKYSSAPLIPVAPSPILSVVAPPTFVPQTAAVP 446
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+D +RLRGLP+ A DI+ F ++ + +H+ +N GRP+GEAF++
Sbjct: 447 GVRDC------VRLRGLPYDASIQDILVFLGEYGADIKTHGVHMVLNHQGRPSGEAFIQM 500
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+AE + AA + ++ RY+E+F S +E++ L G
Sbjct: 501 RSAERAFLAAQRCHKRSMKERYVEVFACSAQEVNIVLMGG 540
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 14 REMGAKRQRLIDQGPSFYGTP--PSSSFMYNPPPAYGYVSQPPPFP----VVRLRGLPFD 67
+ A+ Q+++++ S P PS PP + V Q P VRLRGLP+D
Sbjct: 403 KSTAAEVQQVLNKYSSAPLIPVAPSPILSVVAPPTF--VPQTAAVPGVRDCVRLRGLPYD 460
Query: 68 CTEVDVAEFF--HGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNMG 120
+ D+ F +G DI V ++ H+ +GEAF + + A QR ++++M
Sbjct: 461 ASIQDILVFLGEYGADIKTHGVHMVLNHQGRP-SGEAFIQMRSAERAFLAAQRCHKRSMK 519
Query: 121 RRYVEVFRSKRQE 133
RYVEVF QE
Sbjct: 520 ERYVEVFACSAQE 532
>gi|397478241|ref|XP_003810461.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Pan
paniscus]
Length = 314
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 107/199 (53%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RY E+F SS E+
Sbjct: 173 KERIGHRYTEIFKSSRAEV 191
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
>gi|351702538|gb|EHB05457.1| RNA-binding protein 12 [Heterocephalus glaber]
Length = 850
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 117/226 (51%), Gaps = 24/226 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAAENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVE+ + +++ A I + S G H +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEISPATERQWVAAGGHITFKQSMGPSGQSHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
E FVEF N D KAA+ + + +G+R+I++ P + + M E + R
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDTIR 518
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDTIRKRLQNFSYDQREMVLNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSEHLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 775 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 834
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 835 LNDR-PIGSRKVKL 847
>gi|194387896|dbj|BAG61361.1| unnamed protein product [Homo sapiens]
Length = 731
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 95 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 151
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 152 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSK 211
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 212 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 271
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 272 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 313
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 230 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 289
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 290 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 344
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 345 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 404
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 405 RKKLNGREAFVHVVTLEDMGE 425
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 656 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 715
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 716 LNDR-PIGSRKVKL 728
>gi|50949507|emb|CAH10603.1| hypothetical protein [Homo sapiens]
Length = 954
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 318 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 374
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 375 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSK 434
Query: 159 SHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 435 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 494
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 495 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 536
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 453 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 512
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 513 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 567
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 568 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 627
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 628 RKKLNGREAFVHVVTLEDMRE 648
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 26 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 81
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 82 TGGTIKGSKVTLLLSSKTEMQNMIELSR 109
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 879 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 938
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 939 LNDR-PIGSRKVKL 951
>gi|19923345|ref|NP_006038.2| RNA-binding protein 12 [Homo sapiens]
gi|23510462|ref|NP_690051.1| RNA-binding protein 12 [Homo sapiens]
gi|311893287|ref|NP_001185767.1| RNA-binding protein 12 [Homo sapiens]
gi|312032348|ref|NP_001185769.1| RNA-binding protein 12 [Homo sapiens]
gi|353411938|ref|NP_001238775.1| RNA-binding protein 12 [Pan troglodytes]
gi|397523818|ref|XP_003831915.1| PREDICTED: RNA-binding protein 12 [Pan paniscus]
gi|30173387|sp|Q9NTZ6.1|RBM12_HUMAN RecName: Full=RNA-binding protein 12; AltName: Full=RNA-binding
motif protein 12; AltName: Full=SH3/WW domain anchor
protein in the nucleus; Short=SWAN
gi|15215375|gb|AAH12787.1| RNA binding motif protein 12 [Homo sapiens]
gi|15559252|gb|AAH13981.1| RNA binding motif protein 12 [Homo sapiens]
gi|19070194|gb|AAL83752.1| SWAN [Homo sapiens]
gi|19070200|gb|AAL83755.1| SWAN [Homo sapiens]
gi|21666372|gb|AAM73682.1| swan [Homo sapiens]
gi|119596588|gb|EAW76182.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|119596590|gb|EAW76184.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|119596594|gb|EAW76188.1| hCG38213, isoform CRA_e [Homo sapiens]
gi|123993635|gb|ABM84419.1| RNA binding motif protein 12 [synthetic construct]
gi|123999855|gb|ABM87436.1| RNA binding motif protein 12 [synthetic construct]
gi|168278717|dbj|BAG11238.1| RNA binding motif protein 12 [synthetic construct]
gi|193787298|dbj|BAG52504.1| unnamed protein product [Homo sapiens]
gi|410216986|gb|JAA05712.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410216988|gb|JAA05713.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410260650|gb|JAA18291.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410260652|gb|JAA18292.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410297724|gb|JAA27462.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410297726|gb|JAA27463.1| RNA binding motif protein 12 [Pan troglodytes]
gi|410355577|gb|JAA44392.1| RNA binding motif protein 12 [Pan troglodytes]
Length = 932
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
>gi|21740240|emb|CAD39131.1| hypothetical protein [Homo sapiens]
Length = 663
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 27 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 83
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 84 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSK 143
Query: 159 SHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 144 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 203
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 204 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 245
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 162 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 221
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 222 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 276
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 277 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 336
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 337 RKKLNGREAFVHVVTLEDMRE 357
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 588 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 647
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 648 LNDR-PIGSRKVKL 660
>gi|169731516|gb|ACA64888.1| RNA binding motif protein 12 (predicted) [Callicebus moloch]
Length = 1465
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A N + P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQAHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 856 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 915
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 916 LNDR-PIGSRKVKLM 929
>gi|431917858|gb|ELK17089.1| Epithelial splicing regulatory protein 1 [Pteropus alecto]
Length = 680
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 22/204 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 193 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 252
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 253 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 296
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 297 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 356
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
+ LG RYIELF S+ + + L
Sbjct: 357 HKDLLGKRYIELFRSTAADAESIL 380
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 112/255 (43%), Gaps = 64/255 (25%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 294 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 353
Query: 112 LQRNRQNMGRRYVEVFRSKRQEY-----------------------------------YK 136
L++++ +G+RY+E+FRS + Y+
Sbjct: 354 LRKHKDLLGKRYIELFRSTAADAESILLVFEHVGGFALFLFISENNPTFFIVKVKLGKYR 413
Query: 137 AIANEVSDVRGGS----------PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 186
+ N S P + +P D +RLRGLP++A +D
Sbjct: 414 HVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVRD----------CIRLRGLPYAATIED 463
Query: 187 IMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIEL 243
I+DF +F + +H+ +N GRP+G+AF++ +A+ + AA + T+ RY+E+
Sbjct: 464 ILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKTMKDRYVEV 523
Query: 244 FPSSHEEMDEALSRG 258
F S EEM+ L G
Sbjct: 524 FQCSAEEMNFVLMGG 538
>gi|12053991|emb|CAC20441.1| RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 99/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKTERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
>gi|332248953|ref|XP_003273629.1| PREDICTED: RNA-binding protein 12-like isoform 7 [Nomascus
leucogenys]
Length = 932
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKL 929
>gi|71998567|ref|NP_495960.2| Protein SYM-2 [Caenorhabditis elegans]
gi|74966269|sp|Q22708.3|SYM2_CAEEL RecName: Full=RNA-binding protein sym-2; AltName: Full=Synthetic
lethal with mec-8 protein 2
gi|29165341|gb|AAO65265.1| putative RNA binding protein SYM-2 [Caenorhabditis elegans]
gi|33300449|emb|CAA93887.2| Protein SYM-2 [Caenorhabditis elegans]
Length = 618
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 104/203 (51%), Gaps = 21/203 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V R RGLP+ ++ VA+FF GLDIV L + + GE D AL+R
Sbjct: 182 VCRARGLPWQASDHHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFSSQESRDLALKR 241
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+R + RY+EV YKA +E V GS S + + + + I+R
Sbjct: 242 HRNFLLSRYIEV--------YKAGLDEFMHVATGS---------STEAMEFVSANAIIVR 284
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+RGLP+ I FF+ L++ + IT +DGRPTG+AFV+F ED++ + K R
Sbjct: 285 MRGLPYDCTDAQIRTFFEPLKLTDKILFIT-RTDGRPTGDAFVQFETEEDAQQGLLKHRQ 343
Query: 235 TLGSRYIELFPSSHEEMDEALSR 257
+G RYIELF S+ E+ + + R
Sbjct: 344 VIGQRYIELFKSTAAEVQQVVKR 366
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 111/204 (54%), Gaps = 17/204 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRN 115
+VR+RGLP+DCT+ + FF L + D +LF+ + + + TG+AF L ++
Sbjct: 282 IVRMRGLPYDCTDAQIRTFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQQGLLKH 341
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
RQ +G+RY+E+F+S E + + ++ SP + ++ KD +RL
Sbjct: 342 RQVIGQRYIELFKSTAAEVQQVVKR--CNLINSSPAVANAVEAPEEKKKDC------VRL 393
Query: 176 RGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA--- 230
RGLP+ A I+ F DF ++ +H+ N+ G P+GEAF++ N + + A A
Sbjct: 394 RGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAASACAAGVH 453
Query: 231 KDRMTLG--SRYIELFPSSHEEMD 252
+ M++G RYIE+F +S EE++
Sbjct: 454 NNFMSVGKKKRYIEVFQASAEELN 477
>gi|281182775|ref|NP_001162483.1| RNA-binding protein 12 [Papio anubis]
gi|164623749|gb|ABY64675.1| RNA binding motif protein 12 (predicted) [Papio anubis]
Length = 1466
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A N + P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQSHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMMLNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKLM 930
>gi|426391523|ref|XP_004062122.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12 [Gorilla
gorilla gorilla]
Length = 1474
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 304 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 360
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 361 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSK 420
Query: 159 SHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 421 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 480
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 481 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 522
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 439 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 498
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 499 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 553
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 554 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 613
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 614 RKKLNGREAFVHVVTLEDMRE 634
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 865 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 924
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 925 LNDR-PIGSRKVKLM 938
>gi|344250517|gb|EGW06621.1| Epithelial splicing regulatory protein 1 [Cricetulus griseus]
Length = 677
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 22/202 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 74 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 133
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 134 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 177
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 178 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 237
Query: 232 DRMTLGSRYIELFPSSHEEMDE 253
+ LG RYIELF S+ E+ +
Sbjct: 238 HKDLLGKRYIELFRSTAAEVQQ 259
>gi|332248945|ref|XP_003273625.1| PREDICTED: RNA-binding protein 12-like isoform 3 [Nomascus
leucogenys]
Length = 1466
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 857 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 916
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 917 LNDR-PIGSRKVKLM 930
>gi|324510500|gb|ADY44391.1| RNA-binding protein sym-2, partial [Ascaris suum]
Length = 603
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 33/212 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ T+ DVA+FF GL+I L + + GEA Q + AL+R
Sbjct: 172 VVRARGLPWQATDHDVAQFFVGLNIAPGGVALCLSAEGRRNGEALVRFEESEQRELALKR 231
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDV-----RGGSPHRSIPRAKSHDEGKDSAVH 169
+R + RY+EV+R+ +++ + A S+ RGG+
Sbjct: 232 HRHFLHNRYIEVYRATGEDFLQVAAGSSSEAVRFVSRGGA-------------------- 271
Query: 170 TGILRLRGLPFSAGKDDIMDFFKD----FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
I+R+RGLP+ + I +FF + E I SDGRPTG+AFV F +
Sbjct: 272 -MIVRMRGLPYDCTEAQIREFFASGDNGCTVMEGGILFVNKSDGRPTGDAFVMFDDEAAG 330
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ A+ K + T+GSRYIELF S+ E+ + ++R
Sbjct: 331 QLALTKHKHTIGSRYIELFRSTQAEVQQVVNR 362
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 116/214 (54%), Gaps = 32/214 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFF----HGLDIVD--VLFVHKNN-KFTGEAFCVLGYPLQVDF 110
+VR+RGLP+DCTE + EFF +G +++ +LFV+K++ + TG+AF +
Sbjct: 273 IVRMRGLPYDCTEAQIREFFASGDNGCTVMEGGILFVNKSDGRPTGDAFVMFDDEAAGQL 332
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
AL +++ +G RY+E+FRS + E + + +RS+ + +G
Sbjct: 333 ALTKHKHTIGSRYIELFRSTQAEVQQVV------------NRSLESVQVVVQGN----RK 376
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RLRGLP+ A ++I++F D + +H+ N+ G P+GEAF++ ++E S A
Sbjct: 377 DCIRLRGLPYEAHVENIVEFLGDAARHIVFQGVHMVYNAQGHPSGEAFIQM-DSEISAAT 435
Query: 229 MA----KDRMTLG--SRYIELFPSSHEEMDEALS 256
A M +G RYIE+F S E+M+ ++
Sbjct: 436 AAAIAHNKYMQIGKKQRYIEVFQCSPEDMNLVIT 469
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
DSAV ++R RGLP+ A D+ FF ++ + + ++++GR GEA V F +E
Sbjct: 168 DSAV---VVRARGLPWQATDHDVAQFFVGLNIAPGGVALCLSAEGRRNGEALVRFEESEQ 224
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEE 250
+ A+ + R L +RYIE++ ++ E+
Sbjct: 225 RELALKRHRHFLHNRYIEVYRATGED 250
>gi|307196545|gb|EFN78075.1| RNA-binding protein 35A [Harpegnathos saltator]
Length = 760
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 108/210 (51%), Gaps = 25/210 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 190 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEHRDMALKR 249
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ V+ G H + R I+R
Sbjct: 250 HKHHMGARYIEVYKASGEDFVG-----VAGGTSGEAHAFLSRGAE-----------VIVR 293
Query: 175 LRGLPFSAGKDDIMDFFKD-----FVL-SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ +++FF VL ED + DGR TG+AFV FA ED+ A
Sbjct: 294 MRGLPYDCVAKQVLEFFLSGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDAVKA 353
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++K R +GSRYIELF S+ E+ + L+R
Sbjct: 354 LSKHRDCIGSRYIELFRSTTAEVQQVLNRA 383
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 24/220 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+DC V EFF H LD D VLFV K + + TG+AF +
Sbjct: 291 IVRMRGLPYDCVAKQVLEFFLSGQKPCHVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 350
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDS 166
AL ++R +G RY+E+FRS E + + + + P I + S
Sbjct: 351 VKALSKHRDCIGSRYIELFRSTTAEVQQVLNRAIDPKQVVQPPPRIVQLPSIIPQHIITC 410
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFF----KDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
+RLRGLP+ A + I++F K+ V +H+ N+ G+P+GEAF++ ++
Sbjct: 411 GTRKDCVRLRGLPYEAVVEHILEFMGEHSKNIVF--QGVHMVYNAQGQPSGEAFIQM-DS 467
Query: 223 EDSKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALS 256
E S A A R M G RYIE+F S ++M L+
Sbjct: 468 EASAYACATQRHHRYMIFGKKQRYIEVFQCSGDDMSLVLT 507
>gi|403281161|ref|XP_003932066.1| PREDICTED: RNA-binding protein 12 [Saimiri boliviensis boliviensis]
Length = 1465
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G P +++PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGPAHPPPQTLPRSK 412
Query: 159 SHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 856 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 915
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 916 LNDR-PIGSRKVKLM 929
>gi|312032395|ref|NP_001185821.1| RNA-binding protein 12 [Bos taurus]
Length = 953
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H + +PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQPLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVTSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 878 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 937
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 938 LNDR-PIGSRKVKL 950
>gi|54020837|ref|NP_001005664.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus (Silurana)
tropicalis]
gi|49257786|gb|AAH74690.1| heterogeneous nuclear ribonucleoprotein H2 (H') [Xenopus (Silurana)
tropicalis]
gi|89269950|emb|CAJ83715.1| hnrph1 [Xenopus (Silurana) tropicalis]
Length = 441
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVL----FVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ ++ FF I + L F++ + + +GEAF + AL
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLAL 70
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG RYVEVF+S E + + + S D D G
Sbjct: 71 KKDRATMGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GF 111
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 112 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 172 KERIGHRYIEIFKSSRAEV 190
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D+I +FF + ++ IH +GRP+GEAFVEF ED K A+
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 71 KKDRATMGHRYVEVFKSNNVEMDWVL 96
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A + DI FF L+ +HI + +DGR TGEA VEFA ED+ AAM+K
Sbjct: 278 CVHMRGLPYRATETDIYTFFSP--LNPVRVHIEIGADGRVTGEADVEFATHEDAVAAMSK 335
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 336 DKANMQHRYVELFLNS 351
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 278 CVHMRGLPYRATETDIYTFFSPLNPVRVHIEIGADGRVTGEADVEFATHEDAVAAMSKDK 337
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 338 ANMQHRYVELF 348
>gi|426241394|ref|XP_004014576.1| PREDICTED: RNA-binding protein 12 isoform 1 [Ovis aries]
Length = 931
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H + +PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQPLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVTSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 856 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 915
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 916 LNDR-PIGSRKVKL 928
>gi|388507286|gb|AFK41709.1| unknown [Lotus japonicus]
Length = 163
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 70/96 (72%)
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
K+ +T IL++RGLPF+ K I+DFFKD+ L ED +HI DG+ TGEA+VEF + +
Sbjct: 67 KEQMEYTEILKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPD 126
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
++K AM+KD+M +GSRY+ELFPS+ +E A SR R
Sbjct: 127 EAKRAMSKDKMMIGSRYVELFPSTPDEARRAESRSR 162
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 39 FMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFT 95
+ + ++G Q ++++RGLPF T+ + +FF +++ + + K T
Sbjct: 56 LVRSATKSFGDKEQMEYTEILKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKAT 115
Query: 96 GEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 137
GEA+ P + A+ +++ +G RYVE+F S E +A
Sbjct: 116 GEAYVEFVSPDEAKRAMSKDKMMIGSRYVELFPSTPDEARRA 157
>gi|363730887|ref|XP_418338.3| PREDICTED: epithelial splicing regulatory protein 1 [Gallus gallus]
Length = 636
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A+FF GL+I L ++ + GEA D ALQR
Sbjct: 226 VIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQR 285
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 286 HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 329
Query: 175 LRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+ ++++ FF ++ + D RPTG+AFV FA E ++ A+ K
Sbjct: 330 MRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNALKK 389
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 390 HKDLLGKRYIELFRSTAAEVQQVLNR 415
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 10/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF+ T +V FF V VLFV + +++ TG+AF + A
Sbjct: 327 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 386
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + N S +
Sbjct: 387 LKKHKDLLGKRYIELFRSTAAEV-QQVLNRYSSTPLIPLPTPPILPVLPQQFVPPTNVRD 445
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++A +DI++F +F + +H+ +N GRP+G+AF++ +A+ + AA
Sbjct: 446 CIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFLAA 505
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ T+ RY+E+F S EEM+ L G
Sbjct: 506 QRCHKKTMKDRYVEVFQCSAEEMNFVLMGG 535
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ EF HG+ +V ++ + +G+AF + +
Sbjct: 446 CIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMV----LNHQGRPSGDAFIQMKSADRA 501
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
A QR +++ M RYVEVF+ +E + + G SP
Sbjct: 502 FLAAQRCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 544
>gi|348500206|ref|XP_003437664.1| PREDICTED: epithelial splicing regulatory protein 2-like
[Oreochromis niloticus]
Length = 741
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 110/206 (53%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D AL+R
Sbjct: 225 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFINSEHRDLALER 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + + K++ V I+R
Sbjct: 285 HKHHMGSRYIEVYKATGEEFLK--------IAGGTSNEV-----AQFLSKENQV---IIR 328
Query: 175 LRGLPFSAGKDDIMDFF---KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A +++ F + + DGRPTG+AFV F+ E ++ A+ K
Sbjct: 329 MRGLPFTATPQEVLAFLGPESPVTDGTEGLLFVKYPDGRPTGDAFVLFSCEEYAQNALKK 388
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 389 HKQILGKRYIELFRSTAAEVQQVLNR 414
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 25/220 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T +V F V +LFV + + + TG+AF + A
Sbjct: 326 IIRMRGLPFTATPQEVLAFLGPESPVTDGTEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 385
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD----------VRGGSPHRSIPRAKSHD 161
L++++Q +G+RY+E+FRS E + + +S + + P +
Sbjct: 386 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPSPIVPVPVLTTPPFLPAAS 445
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
+D +RLRGLP++AG +DI++F + + +H+ +N GRP+G+AF++
Sbjct: 446 STRDC------VRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLNQQGRPSGDAFIQM 499
Query: 220 ANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + A + T+ RY+E+F S EEM L G
Sbjct: 500 KSPDKAFMVAQKCHKKTMKDRYVEVFQCSTEEMSIVLMGG 539
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 40/61 (65%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++R++GLP++ G DI+ FF+ + L D++ I N G+ +GEA + F + E ++ A+A
Sbjct: 664 ALVRMQGLPYNTGVKDILSFFQGYQLQPDAVLILYNFSGQCSGEALITFPSEEIARRAVA 723
Query: 231 K 231
+
Sbjct: 724 E 724
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 18/151 (11%)
Query: 14 REMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPF 66
R A+ Q+++++ + TP S+ +P ++ PP P VRLRGLP+
Sbjct: 402 RSTAAEVQQVLNR---YMSTPLISTLPPSPIVPVPVLTTPPFLPAASSTRDCVRLRGLPY 458
Query: 67 DCTEVDVAEFFHGLDIVDV------LFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNM 119
D+ EF G VD+ + +++ + +G+AF + P + Q+ +++ M
Sbjct: 459 TAGIEDILEFM-GEHTVDIKPHGVHMVLNQQGRPSGDAFIQMKSPDKAFMVAQKCHKKTM 517
Query: 120 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
RYVEVF+ +E + + G SP
Sbjct: 518 KDRYVEVFQCSTEEMSIVLMGGTLNRSGLSP 548
>gi|426241396|ref|XP_004014577.1| PREDICTED: RNA-binding protein 12 isoform 2 [Ovis aries]
Length = 926
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 115/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H + +PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSIGPSGQTHPPPQPLPRSK 412
Query: 159 SHDEGKDS---AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + H + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF N D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 491 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVTSAKV-C 545
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 546 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 605
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 606 RKKLNGREAFVHVVTLEDMRE 626
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 851 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 910
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 911 LNDR-PIGSRKVKL 923
>gi|47217849|emb|CAG02342.1| unnamed protein product [Tetraodon nigroviridis]
Length = 776
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL I L ++ + GEA D AL+R
Sbjct: 256 VIRARGLPWQSSDQDIARFFKGLSIARGGVALCLNAQGRRNGEALVRFINSEHRDLALER 315
Query: 115 NRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++ +MG RY+EV+++ +E+ K +NEV+ K++ V
Sbjct: 316 HKHHMGNRYIEVYKATGEEFLKIAGGTSNEVAQFLS----------------KENQV--- 356
Query: 172 ILRLRGLPFSAGKDDIMDFF---KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
I+R+RGLPF+A +++ F + + DGRPTG+AFV F+ E ++ A
Sbjct: 357 IIRMRGLPFTATPQEVLSFLGPESPVTDGSEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 416
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ K + LG RYIELF S+ E+ + L+R
Sbjct: 417 LKKHKQILGKRYIELFRSTAAEVQQVLNR 445
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 111/214 (51%), Gaps = 13/214 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T +V F V +LFV + + + TG+AF + A
Sbjct: 357 IIRMRGLPFTATPQEVLSFLGPESPVTDGSEGLLFVKYPDGRPTGDAFVLFSCEEYAQNA 416
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS----DVRGGSPHRSIPRAKSHDEGKDSA 167
L++++Q +G+RY+E+FRS E + + +S SP S+P + ++
Sbjct: 417 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPPSPMVSVPVLSTPPFLPTAS 476
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+RLRGLP++AG +DI++F + + +H+ +N GRP+G+AF++ + + +
Sbjct: 477 TARDCVRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLNQQGRPSGDAFIQMKSPDKA 536
Query: 226 -KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
A + T+ RY+E+F S EEM L G
Sbjct: 537 FMVAQKCHKKTMKDRYVEVFQCSTEEMSIVLMGG 570
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 18/151 (11%)
Query: 14 REMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPF 66
R A+ Q+++++ + TP S+ +P + +S PP P VRLRGLP+
Sbjct: 433 RSTAAEVQQVLNR---YMSTPLISTLPPSPMVSVPVLSTPPFLPTASTARDCVRLRGLPY 489
Query: 67 DCTEVDVAEFFHGLDIVDV------LFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNM 119
D+ EF G VD+ + +++ + +G+AF + P + Q+ +++ M
Sbjct: 490 TAGIEDILEFM-GEHTVDIKPHGVHMVLNQQGRPSGDAFIQMKSPDKAFMVAQKCHKKTM 548
Query: 120 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
RYVEVF+ +E + + G SP
Sbjct: 549 KDRYVEVFQCSTEEMSIVLMGGTLNRSGLSP 579
>gi|395512150|ref|XP_003760307.1| PREDICTED: epithelial splicing regulatory protein 1 [Sarcophilus
harrisii]
Length = 550
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 110/202 (54%), Gaps = 22/202 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 225 IVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 285 HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 328
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 329 MRGLPFTATAEEVLAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 388
Query: 232 DRMTLGSRYIELFPSSHEEMDE 253
+ LG RYIELF S+ E+ +
Sbjct: 389 HKDLLGKRYIELFRSTAAEVQQ 410
>gi|74095965|ref|NP_001027829.1| swan [Takifugu rubripes]
gi|31324616|gb|AAP48570.1| swan [Takifugu rubripes]
Length = 889
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 15/211 (7%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V L+ LPF CTEVDV FF GL + V F+ + TG+A P + A++R
Sbjct: 301 VLLQNLPFTCTEVDVRGFFRGLGVDAVRFLKDAQGRHTGKAMVKFFSPQESFEAVKRGGG 360
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH-----------DEGKDS 166
MG+R++E+ Q++ +I N + S ++S + H G+
Sbjct: 361 MMGQRFIEINPGSEQQW-ASINNGTASQASHSGNKSNIELQQHCRNNSGVEARDQRGRSR 419
Query: 167 AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
+ H + L+GLP+ A K I +FF + + EDSI+I +GR TGE F+EF +D
Sbjct: 420 SPHRQEFCIYLKGLPYEADKKQIKEFFNNLAIIEDSIYIAYGPNGRATGEGFLEFKTEQD 479
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
KAA+ +GSR+I++ P S + M E +
Sbjct: 480 HKAALGAHMQYMGSRFIQVHPVSRKGMLEKI 510
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 18/202 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
+ L+GLP++ + + EFF+ L I+ D +++ N + TGE F AL
Sbjct: 427 CIYLKGLPYEADKKQIKEFFNNLAIIEDSIYIAYGPNGRATGEGFLEFKTEQDHKAALGA 486
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD---SAVHTG 171
+ Q MG R+++V R K + ++ +R R SH GK S
Sbjct: 487 HMQYMGSRFIQVHPVSR----KGMLEKIDAIR--------KREASHGGGKSQDGSKNPRN 534
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ + +P++ K D+ F + L EDS+ + +S G G++ + + ED++ A
Sbjct: 535 CVHITNIPYNISKKDVRAFLEGVGLYEDSLKVLTDSHGNGLGQSIFQLRSEEDARKAERL 594
Query: 232 DRMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 595 HRQKLNGRDAFVHLVTVEQMKE 616
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
++ + L SS EM + R
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMHSMIELSR 87
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-- 229
+++L+ +PF+ D+IMDFF + + S+ + + G PTGEA V F N E++ AA+
Sbjct: 814 VVKLQNMPFTVTVDEIMDFFYGYQVVPGSVCLQFSEKGLPTGEAMVAFQNHEEATAAVLD 873
Query: 230 AKDRMTLGSRYIEL 243
DR +G+R +++
Sbjct: 874 LNDR-PIGARKVKI 886
>gi|260819360|ref|XP_002605005.1| hypothetical protein BRAFLDRAFT_285603 [Branchiostoma floridae]
gi|229290334|gb|EEN61015.1| hypothetical protein BRAFLDRAFT_285603 [Branchiostoma floridae]
Length = 645
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 21/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
++R+RGLP+ ++ D+A FF GL+I + ++ + GEA D AL R
Sbjct: 215 ILRVRGLPWQSSDQDIARFFRGLNITKGGVAVCLNPQGRRNGEALVRFASKEHRDLALLR 274
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G+RY+EV+++ +++ K V GG+ + + + DSA I+R
Sbjct: 275 HKHHIGQRYIEVYKATGEDFLK--------VAGGNANEATAFLR------DSAAEV-IVR 319
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLP++A DI++FF E I ++GR TG+AFV F ++ A+AK
Sbjct: 320 MRGLPYTATAADILNFFGQSCPVAGGEKGILFVRYANGRSTGDAFVLFETEAYAQLALAK 379
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ +LG RYIELF S+ E+ + +R
Sbjct: 380 HKESLGKRYIELFRSTAAEVQQVWNR 405
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 112/219 (51%), Gaps = 27/219 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-----DVLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLP+ T D+ FF V +LFV + N + TG+AF + A
Sbjct: 317 IVRMRGLPYTATAADILNFFGQSCPVAGGEKGILFVRYANGRSTGDAFVLFETEAYAQLA 376
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKA--------IANEVSDVRGGSPHRSIPRAKSHDEG 163
L ++++++G+RY+E+FRS E + + + + P ++I D
Sbjct: 377 LAKHKESLGKRYIELFRSTAAEVQQVWNRYQQCPLIHTTPTMIPMLPQQAITCGSIRD-- 434
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFAN 221
+R+RGLP+ A DD++ F ++ + + IH+ +NS G+P+G+ F++ +
Sbjct: 435 --------CVRMRGLPYQATHDDVLAFLGEYAVYVRDHGIHMVLNSSGKPSGDCFIQMYS 486
Query: 222 AEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRGR 259
E ++ A K R +G RYIE+F S +EM+ L G+
Sbjct: 487 PEAARQAAEKCHRQYMGDRYIEVFQCSGDEMNFVLMGGQ 525
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 30 FYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDI 82
++ +PP S P + GY PPP PV+R+RG+P++ DV FF G +
Sbjct: 594 YFPSPPVS------PTSVGYY--PPPSPVLRMRGIPYNAGVPDVVNFFGGYQV 638
>gi|328716236|ref|XP_001946855.2| PREDICTED: RNA-binding protein fusilli-like [Acyrthosiphon pisum]
Length = 858
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 27/257 (10%)
Query: 11 ADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTE 70
A+ ++M QRLI G +F +P P + + VVR RGLP+ ++
Sbjct: 222 AEVKDMVNIVQRLIADGHTF-NSPEIVQLKLEPGICWKN-EEVDNNCVVRARGLPWQSSD 279
Query: 71 VDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
D+A+FF GL+I L + + + GEA D A++R++ ++G RY+EV+
Sbjct: 280 QDIAKFFRGLNIAKGGVALCLSAHGRRNGEAVVRFVNQEHRDMAMKRHKHHIGSRYIEVY 339
Query: 128 RSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDI 187
++ +++ +V GG+ S + + I+R+RGLP+ D+
Sbjct: 340 KANGEDFI--------NVAGGN--------SSEAQTFLTKGAQVIVRMRGLPYDCTAKDV 383
Query: 188 MDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 241
+ FF++ + ED + DGR TG+AFV FA+ +D+ A++K R +G+RYI
Sbjct: 384 ITFFENGEQTCSVMDGEDGVLFVKKPDGRATGDAFVLFADEDDAPKALSKHRDLIGTRYI 443
Query: 242 ELFPSSHEEMDEALSRG 258
ELF S+ E+ + L+R
Sbjct: 444 ELFRSTTAEVQQVLNRA 460
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 115/243 (47%), Gaps = 44/243 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG----LDIVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+DCT DV FF ++D VLFV K + + TG+AF +
Sbjct: 368 IVRMRGLPYDCTAKDVITFFENGEQTCSVMDGEDGVLFVKKPDGRATGDAFVLFADEDDA 427
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYK--------AIANEVSDVRGG------------ 148
AL ++R +G RY+E+FRS E + ++ + SD G
Sbjct: 428 PKALSKHRDLIGTRYIELFRSTTAEVQQVLNRAMDPSVRSTASDSNGNITTPVTTTAGVN 487
Query: 149 -SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF----KDFVLSEDS 200
SP +P S +RLRGLP+ A + I++F K+ V
Sbjct: 488 NSPTALLGHVPLLPLPQHVITSGTRKDCIRLRGLPYEANVEHILEFLGEHSKNIVF--QG 545
Query: 201 IHITMNSDGRPTGEAFVEFAN-AEDSKAAMAK--DRMTLG--SRYIELFPSSHEEMDEAL 255
+H+ NS G +GEAF++ N ++AAMAK + M+ G RYIE+F S E+M L
Sbjct: 546 VHMVYNSVGHASGEAFIQMNNEGSAAQAAMAKHHNYMSFGKKQRYIEVFQCSGEDMHLVL 605
Query: 256 SRG 258
+ G
Sbjct: 606 TGG 608
>gi|444525895|gb|ELV14190.1| Epithelial splicing regulatory protein 1, partial [Tupaia
chinensis]
Length = 689
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 22/203 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 237 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 296
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 297 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 340
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 341 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 400
Query: 232 DRMTLGSRYIELFPSSHEEMDEA 254
+ LG RYIELF S+ E+ +
Sbjct: 401 HKDLLGKRYIELFRSTAAEVQKV 423
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 33/224 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 338 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 397
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS--------------PHRSIPRA 157
L++++ +G+RY+E+FRS E K +V + + P + +P
Sbjct: 398 LRKHKDLLGKRYIELFRSTAAEVQKVFKIQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPT 457
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEA 215
D +RLRGLP++A +DI+DF +F + +H+ +N GRP+G+A
Sbjct: 458 NVRD----------CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDA 507
Query: 216 FVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
F++ +A+ + AA + T+ RY+E+F S EEM+ L G
Sbjct: 508 FIQMKSADRAFMAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 551
>gi|327269521|ref|XP_003219542.1| PREDICTED: epithelial splicing regulatory protein 1-like [Anolis
carolinensis]
Length = 648
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 111/206 (53%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
++R RGLP+ ++ DVA FF GL+I L ++ + GEA D ALQR
Sbjct: 219 IIRARGLPWQSSDQDVARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 278
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 279 HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 322
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+ ++++ FF ++ I D RPTG+AFV FA E ++ A+ K
Sbjct: 323 MRGLPFNVTTEEVLTFFGQHCPVTGGKEGILFVTYPDHRPTGDAFVLFACEEYAQNALKK 382
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 383 HKDLLGKRYIELFRSTAAEVQQVLNR 408
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 108/210 (51%), Gaps = 10/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF+ T +V FF V +LFV + +++ TG+AF + A
Sbjct: 320 IVRMRGLPFNVTTEEVLTFFGQHCPVTGGKEGILFVTYPDHRPTGDAFVLFACEEYAQNA 379
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+RY+E+FRS E + + N S +
Sbjct: 380 LKKHKDLLGKRYIELFRSTAAEV-QQVLNRYSSTPLIPLPTPPILPVLPQQFVPPTNVRD 438
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++A +DI+ F +F + +H+ +N GRP+G+AF++ ++E + AA
Sbjct: 439 CIRLRGLPYAATIEDILGFLGEFSADIRTHGVHMVLNHQGRPSGDAFIQMKSSERAFMAA 498
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ T+ RY+E+F S EEM+ L G
Sbjct: 499 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 528
>gi|351713464|gb|EHB16383.1| Epithelial splicing regulatory protein 1 [Heterocephalus glaber]
Length = 677
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 22/201 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 220 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 279
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 280 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 323
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 324 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 383
Query: 232 DRMTLGSRYIELFPSSHEEMD 252
+ LG RYIELF S+ E+
Sbjct: 384 HKDLLGKRYIELFRSTAAEVQ 404
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 30/221 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 321 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 380
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKA-IANEVSDVRGGS----------PHRSIPRAKSH 160
L++++ +G+RY+E+FRS E + N S P + +P
Sbjct: 381 LRKHKDLLGKRYIELFRSTAAEVQVVQVLNRFSSAPLIPLPTPPIIPVLPQQFVPPTNVR 440
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVE 218
D +RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++
Sbjct: 441 D----------CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQ 490
Query: 219 FANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+A+ + A K + T+ RY+E+F S EEM+ L G
Sbjct: 491 MKSADRAFMASQKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 531
>gi|51467948|ref|NP_001003856.1| RNA-binding protein 12 [Danio rerio]
gi|31324618|gb|AAP48571.1| swan [Danio rerio]
gi|190336635|gb|AAI62473.1| RNA binding motif protein 12 [Danio rerio]
gi|190337822|gb|AAI62102.1| RNA binding motif protein 12 [Danio rerio]
Length = 876
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 12/207 (5%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNRQ 117
V L GLPF E ++ +FFHGL I + + N + +G A P + AL+RN
Sbjct: 304 VHLHGLPFSVLEHEIRDFFHGLGIESIRLLKDNLGRNSGRALVKFYSPHESFEALKRNAG 363
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR-------SIPRAKSHDEGKDSAVHT 170
+G+RY+EV + +++ +++ + S G S H + P S + + + H
Sbjct: 364 MIGQRYIEVSPATERQWRESVGH--SKAGGDSEHNRHRRRSANSPTPSSGERARSRSPHK 421
Query: 171 G--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+ L+GLP+ A I +FFK+ + EDSI+I +GR TGE FVEF N D KAA
Sbjct: 422 LDYCVYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGEGFVEFRNEMDYKAA 481
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEAL 255
+ +GSR+I++ P + + M E +
Sbjct: 482 LGCHMQYMGSRFIQVHPITKKNMYEKI 508
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 10/200 (5%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLP++ + EFF LDIV D +++ N + TGE F + AL
Sbjct: 425 CVYLKGLPYEAENKQIFEFFKNLDIVEDSIYIAYGPNGRATGEGFVEFRNEMDYKAALGC 484
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+ Q MG R+++V ++ Y+ I ++G + KS G SA
Sbjct: 485 HMQYMGSRFIQVHPITKKNMYEKIDAIRKRMQGSQGDQ-----KSSSGGGKSA--KSCAH 537
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+ +P++ K D+ F L E+S+ + ++S+G G+A V+F + ED+ A R
Sbjct: 538 ITNIPYNVTKKDVRLFLDGIELFEESLKVLVDSNGNGLGQAIVQFKSDEDALKAERLHRQ 597
Query: 235 TLGSRYIELFPSSHEEMDEA 254
L R + + ++M E
Sbjct: 598 KLNGRDAFVHLVTFDQMKEV 617
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
++ + L SS EM + R
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMQNMIELSR 87
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ L GLPFS + +I DFF L +SI + ++ GR +G A V+F + +S A+ ++
Sbjct: 304 VHLHGLPFSVLEHEIRDFFHG--LGIESIRLLKDNLGRNSGRALVKFYSPHESFEALKRN 361
Query: 233 RMTLGSRYIELFPSSHEEMDEALSRGR 259
+G RYIE+ P++ + E++ +
Sbjct: 362 AGMIGQRYIEVSPATERQWRESVGHSK 388
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA-MA 230
I++++ +PF+ D+I+DFF + + S+ + + G PTGEA V F + +++ AA M
Sbjct: 801 IVKIQNMPFTVTVDEIIDFFYGYQVLPGSVCLQFSDKGLPTGEAMVAFDSHDEAMAAVMD 860
Query: 231 KDRMTLGSRYIEL 243
+ +G+R +++
Sbjct: 861 LNDRPIGARKVKI 873
>gi|308464398|ref|XP_003094466.1| CRE-TWK-4 protein [Caenorhabditis remanei]
gi|308247695|gb|EFO91647.1| CRE-TWK-4 protein [Caenorhabditis remanei]
Length = 1026
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 104/203 (51%), Gaps = 21/203 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV---DVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V R RGLP+ ++ VA+FF GLDIV L + + GE D AL+R
Sbjct: 584 VCRARGLPWQASDQHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFATQESRDLALKR 643
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+R + RY+EV YKA +E V GS S + + + + I+R
Sbjct: 644 HRNFLLSRYIEV--------YKAGLDEFMHVATGS---------SIEAMEFVSANAVIVR 686
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+RGLP+ I FF+ L++ + IT +DGRPTG+AFV+F ED++ + K R
Sbjct: 687 MRGLPYDCTDTQIRAFFEPLKLTDKILFIT-RTDGRPTGDAFVQFETEEDAQKGLLKHRQ 745
Query: 235 TLGSRYIELFPSSHEEMDEALSR 257
+G RYIELF S+ E+ + + R
Sbjct: 746 IIGQRYIELFKSTAAEVQQVVKR 768
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 110/204 (53%), Gaps = 17/204 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRN 115
+VR+RGLP+DCT+ + FF L + D +LF+ + + + TG+AF L ++
Sbjct: 684 IVRMRGLPYDCTDTQIRAFFEPLKLTDKILFITRTDGRPTGDAFVQFETEEDAQKGLLKH 743
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
RQ +G+RY+E+F+S E + + ++ SP + ++ KD +RL
Sbjct: 744 RQIIGQRYIELFKSTAAEVQQVVKR--CNLINSSPAVTNAVEAPEEKKKDC------VRL 795
Query: 176 RGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFAN---AEDSKAAMA 230
RGLP+ A I+ F DF ++ +H+ N+ G P+GEAF++ + A + A +
Sbjct: 796 RGLPYEATVQHIVTFLGDFAQMVKFQGVHMVYNNQGNPSGEAFIQLISEAAAAATAAGVH 855
Query: 231 KDRMTLG--SRYIELFPSSHEEMD 252
+ M +G RYIE+F SS EE++
Sbjct: 856 NNFMCVGKKKRYIEVFQSSAEELN 879
>gi|307181801|gb|EFN69244.1| RNA-binding protein 35A [Camponotus floridanus]
Length = 762
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 25/210 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 188 VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGEALVRFINKEHRDMALKR 247
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ IA S G H + R I+R
Sbjct: 248 HKHHMGPRYIEVYKASGEDFV-GIAGGTS----GEAHAFLSRGAQ-----------VIVR 291
Query: 175 LRGLPFSAGKDDIMDFFK------DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ +++FF+ + E+ + DGR TG+AFV FA ED+ A
Sbjct: 292 MRGLPYDCIAKQVLEFFQSGQKPCQVLDGEEGVLFVKKPDGRATGDAFVLFAKEEDAVKA 351
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++K R +GSRYIELF S+ E+ + L+R
Sbjct: 352 LSKHRDLIGSRYIELFRSTTAEVQQVLNRA 381
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 109/218 (50%), Gaps = 20/218 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG----LDIVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+DC V EFF ++D VLFV K + + TG+AF +
Sbjct: 289 IVRMRGLPYDCIAKQVLEFFQSGQKPCQVLDGEEGVLFVKKPDGRATGDAFVLFAKEEDA 348
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL ++R +G RY+E+FRS E + + A + V P + S
Sbjct: 349 VKALSKHRDLIGSRYIELFRSTTAEVQQVLNRATDPKQVILPPPPITQLPPLLPQHIITS 408
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP+ A + I++F + + +H+ N+ G+P+GEAF++ ++E
Sbjct: 409 GTRKDCVRLRGLPYEALVEHILEFMGEHSKNIVYQGVHMVYNAQGQPSGEAFIQM-DSEA 467
Query: 225 SKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALS 256
S A A R MT G RYIE+F S ++M+ L+
Sbjct: 468 SAYACASQRHHRYMTYGKKQRYIEVFQCSGDDMNLVLT 505
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
P S DE D+ ++R RGLP+ + DI FF+ +++ + + ++ GR GE
Sbjct: 174 PGICSKDEEVDNDC---VVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPMGRRNGE 230
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
A V F N E A+ + + +G RYIE++ +S E+
Sbjct: 231 ALVRFINKEHRDMALKRHKHHMGPRYIEVYKASGED 266
>gi|326917907|ref|XP_003205236.1| PREDICTED: epithelial splicing regulatory protein 1-like [Meleagris
gallopavo]
Length = 671
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A+FF GL+I L ++ + GEA D ALQR
Sbjct: 225 VIRARGLPWQSSDQDIAKFFKGLNIAKGGAALCLNAQGRRNGEALVRFVNEEHRDLALQR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 285 HKHHMGNRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 328
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+ ++++ FF ++ + D RPTG+AFV FA E ++ A+ K
Sbjct: 329 MRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNALKK 388
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 389 HKDLLGRRYIELFRSTAAEVQQVLNR 414
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 10/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF+ T +V FF V VLFV + +++ TG+AF + A
Sbjct: 326 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 385
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +GRRY+E+FRS E + + N S +
Sbjct: 386 LKKHKDLLGRRYIELFRSTAAEV-QQVLNRYSSTPLIPLPTPPILPVLPQQFVPPTNVRD 444
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + AA
Sbjct: 445 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFLAA 504
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ T+ RYIE+F S EEM+ L G
Sbjct: 505 QKCHKKTMKDRYIEVFQCSAEEMNFVLMGG 534
>gi|432852904|ref|XP_004067443.1| PREDICTED: epithelial splicing regulatory protein 2-like [Oryzias
latipes]
Length = 695
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 28/209 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D AL+R
Sbjct: 182 VIRARGLPWQSSDQDIARFFKGLNIAKGGVALCLNAQGRRNGEALVRFIDSEHRDLALER 241
Query: 115 NRQNMGRRYVEVFRSKRQEYYK---AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++ +MG RY+EV+++ +E+ K +NEV+ K++ V
Sbjct: 242 HKHHMGCRYIEVYKATGEEFLKIAGGTSNEVAQFLS----------------KENQV--- 282
Query: 172 ILRLRGLPFSAGKDDIMDFF---KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
I+R+RGLPF+A +++ F + + DGRPTG+AFV F+ E + A
Sbjct: 283 IIRMRGLPFTATSQEVLSFLGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCEEYVQNA 342
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ K + LG RYIELF S+ E+ + L+R
Sbjct: 343 LKKHKQILGKRYIELFRSTAAEVQQVLNR 371
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 11/212 (5%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T +V F V +LFV + + + TG+AF + V A
Sbjct: 283 IIRMRGLPFTATSQEVLSFLGPESPVTDGAEGLLFVKYPDGRPTGDAFVLFSCEEYVQNA 342
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIPRAKSHDEGKDSAVHT 170
L++++Q +G+RY+E+FRS E + + +S + P I + +A T
Sbjct: 343 LKKHKQILGKRYIELFRSTAAEVQQVLNRYMSTPLISTLPASPIVPVLASQPFLPAATST 402
Query: 171 -GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-K 226
+RLRGLP++AG +DI++F + + +H+ +N GRP+G+AF++ +A+ +
Sbjct: 403 RDCVRLRGLPYTAGIEDILEFMGEHTVDIKPHGVHMVLNQQGRPSGDAFIQMKSADRAFM 462
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
A + T+ RY+E+F S EEM L G
Sbjct: 463 VAQKCHKKTMKDRYVEVFQCSTEEMSIVLMGG 494
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 40/61 (65%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++R++GLP++ G DI+ FF+ + L D++ I N G+ +GEA + F + + ++ A+A
Sbjct: 618 ALVRMQGLPYNTGVKDILSFFQGYQLQPDAVVILYNFSGQCSGEALITFPSEDLARRAVA 677
Query: 231 K 231
+
Sbjct: 678 E 678
>gi|351712921|gb|EHB15840.1| Heterogeneous nuclear ribonucleoprotein H2 [Heterocephalus glaber]
Length = 416
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTAGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G R++E+F SS E+
Sbjct: 173 KERIGHRHVEIFKSSRAEV 191
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTAGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|260834915|ref|XP_002612455.1| hypothetical protein BRAFLDRAFT_136434 [Branchiostoma floridae]
gi|229297832|gb|EEN68464.1| hypothetical protein BRAFLDRAFT_136434 [Branchiostoma floridae]
Length = 411
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 101/206 (49%), Gaps = 29/206 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDF 110
VVR+RGLP+ T +V F G D K + +GEAF + +
Sbjct: 3 VVRMRGLPWSATCEEVKNFLTSEGCKVKGGDGGIHFTFSKEGRPSGEAFVEVETSEDFEK 62
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
AL ++ Q+MG RY+EVFRSK E + + D V+
Sbjct: 63 ALAKHNQHMGHRYIEVFRSKVSEMEWVVKHSGQD----------------------QVND 100
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
GI+RLRGLPF K++I FF + + I + + GR TGEAFV+F + + ++ A+
Sbjct: 101 GIVRLRGLPFGCSKEEIAQFFSGLEIVPNGITLPTDYQGRSTGEAFVQFTSQDIAEKALG 160
Query: 231 KDRMTLGSRYIELFPSSHEEMDEALS 256
K + +G RYIE+F SS E+ E +S
Sbjct: 161 KHKEKIGHRYIEIFKSSRNEVRECMS 186
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLPF A +DI FF+ V + IH D R TGEA VEFA+ +D+ AAMAKD
Sbjct: 280 VHMRGLPFKAASEDIEQFFQPLVPMKVQIH--YGPDKRATGEADVEFASHDDAVAAMAKD 337
Query: 233 RMTL 236
+ +
Sbjct: 338 KANM 341
>gi|91094511|ref|XP_971832.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H
(hnRNP H) [Tribolium castaneum]
gi|270000730|gb|EEZ97177.1| hypothetical protein TcasGA2_TC004364 [Tribolium castaneum]
Length = 379
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 107/203 (52%), Gaps = 25/203 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVH----KNNKFTGEAFCVLGYPLQVDFAL 112
+V+LRGLP+ T D+ +FF + + L +H + + +GEAF ++ AL
Sbjct: 11 IVKLRGLPWSATTEDILKFFKNCKVFNGKLGIHMTSSREGRPSGEAFVEFESEDDLNSAL 70
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+++G RY+EVF+ + E I RS P +D+G
Sbjct: 71 RKDREHIGSRYIEVFKVNKAEMDWVIK------------RSGPTYGVNDDG--------C 110
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I FF + + I + + GR +GEA+V+F N E ++ A+ K
Sbjct: 111 VRLRGLPFGCSKEEIAQFFTGLEIVPNGITLLTDYSGRSSGEAYVQFVNKEVAEKALLKH 170
Query: 233 RMTLGSRYIELFPSSHEEMDEAL 255
R +G RYIE+F SS E++ L
Sbjct: 171 REKIGHRYIEIFRSSLSEVNSVL 193
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I++LRGLP+SA +DI+ FFK+ + + IH+T + +GRP+GEAFVEF + +D +A+
Sbjct: 11 IVKLRGLPWSATTEDILKFFKNCKVFNGKLGIHMTSSREGRPSGEAFVEFESEDDLNSAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
KDR +GSRYIE+F + EMD + R
Sbjct: 71 RKDREHIGSRYIEVFKVNKAEMDWVIKR 98
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 5/106 (4%)
Query: 143 SDVRGG-SPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 201
SD RGG SP+ ++++++ D +H + +RGLPF A DI DFFK V + ++
Sbjct: 261 SDSRGGRSPYEIDSWSETNNQTGDRTMH--CVHMRGLPFKATAADITDFFKPIVPT--NV 316
Query: 202 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ + +GR +GEA VEFA+ ED+ AM+KD+ + RYIELF +S
Sbjct: 317 KLLQDHNGRASGEADVEFASHEDAMRAMSKDKGHMQHRYIELFLNS 362
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLPF T D+ +FF + +V L N + +GEA A+ +++
Sbjct: 289 CVHMRGLPFKATAADITDFFKPIVPTNVKLLQDHNGRASGEADVEFASHEDAMRAMSKDK 348
Query: 117 QNMGRRYVEVF 127
+M RY+E+F
Sbjct: 349 GHMQHRYIELF 359
>gi|391341907|ref|XP_003745268.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Metaseiulus occidentalis]
Length = 503
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 103/194 (53%), Gaps = 30/194 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDF 110
+VRLRG+P+ T DV F +G D + + ++ + +GEA+ L V+
Sbjct: 9 IVRLRGMPWSSTNDDVLNFLGSDVHVLNGKDGIHFTYT-RDGRASGEAYVELESEPDVEN 67
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
AL+++ +NMG RY+EVFR+KR E + S+ +
Sbjct: 68 ALKKDNENMGNRYIEVFRAKRAEMEWCMKKSSSNT----------------------LDE 105
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
GI+RLRG+PF K++I +FF + + I I ++ +GR G+A+V+FA+ E ++ A+
Sbjct: 106 GIVRLRGIPFGCSKEEIANFFSGLEIVPNGIVIPVDFNGRTAGDAYVQFASKEAAEKALE 165
Query: 231 KDRMTLGSRYIELF 244
K + +G RYIE+F
Sbjct: 166 KHKERIGHRYIEIF 179
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 50/239 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VRLRG+PF C++ ++A FF GL+IV V+ V N + G+A+ + AL++
Sbjct: 107 IVRLRGIPFGCSKEEIANFFSGLEIVPNGIVIPVDFNGRTAGDAYVQFASKEAAEKALEK 166
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDV----------------------------- 145
+++ +G RY+E+F+S E ++ ++
Sbjct: 167 HKERIGHRYIEIFKSSLSEMESSLHAQLRSFGGGFGGSGGGGRNFGGAAPQRGGRPGPYD 226
Query: 146 ----RGGSPHRSIPRAKSHDE--------GKDS-AVHTG---ILRLRGLPFSAGKDDIMD 189
RG P R + +D+ GK S A ++G + +RG+P+ A D+ D
Sbjct: 227 RMMGRGPPPRRDEGYSTGYDDYGYGGRRAGKSSGASYSGQGHFVHMRGIPYKATDSDVYD 286
Query: 190 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248
FF L S+ + GRP+GE VEF++ D++ AMAK+ +G+RY+ELF S+
Sbjct: 287 FFAP--LRPVSVQFIYEAGGRPSGECDVEFSSHRDAQDAMAKNNAHMGTRYVELFLKSN 343
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RG+P+ T+ DV +FF L V V F+++ + +GE A+ +N
Sbjct: 270 VHMRGIPYKATDSDVYDFFAPLRPVSVQFIYEAGGRPSGECDVEFSSHRDAQDAMAKNNA 329
Query: 118 NMGRRYVEVFR--------------------SKRQEYYKAIANEVSDVRGGSPHRSIPRA 157
+MG RYVE+F S + Y+ SI
Sbjct: 330 HMGTRYVELFLKSNPGSMSKGHGNGQGHNYFSNEYDEYEYGGGGGGGGGNSGGGGSIAFR 389
Query: 158 KSHDEG-KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
S + G S H + +RGLP+ A +DD+ FF + S+ T ++ GRP+GE
Sbjct: 390 SSRNGGFGPSGGH--FVHMRGLPYKACEDDVFQFFDP--IRPASVRFTFDATGRPSGECD 445
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
VEFA+ D+ AM ++ +G+RY+ELF S
Sbjct: 446 VEFASHRDAAEAMERNNAHMGNRYVELFMKS 476
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
I+RLRG+P+S+ DD+++F V +D IH T DGR +GEA+VE + D + A
Sbjct: 9 IVRLRGMPWSSTNDDVLNFLGSDVHVLNGKDGIHFTYTRDGRASGEAYVELESEPDVENA 68
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ KD +G+RYIE+F + EM+ + +
Sbjct: 69 LKKDNENMGNRYIEVFRAKRAEMEWCMKK 97
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLP+ E DV +FF + V F + +GE A++RN
Sbjct: 404 VHMRGLPYKACEDDVFQFFDPIRPASVRFTFDATGRPSGECDVEFASHRDAAEAMERNNA 463
Query: 118 NMGRRYVEVFRSKRQEYYKAIAN 140
+MG RYVE+F K KA N
Sbjct: 464 HMGNRYVELFM-KSSAQNKAFGN 485
>gi|291389582|ref|XP_002711385.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F [Oryctolagus
cuniculus]
Length = 415
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ C+ DV F I D V F++ + + +GEAF L V AL
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGATGVHFIYAREGRQSGEAFVELESEDDVKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++ G Y++VF+S R E + + S P S D D G
Sbjct: 72 KKDRESTGHPYIKVFKSHRTELDWVLKH------------SGP--NSADTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++S+ + TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDSEDKITGEAFVQFASQEVAEKALGKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G R IE+F SS EE+
Sbjct: 173 KERIGHRSIEVFKSSQEEV 191
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGATGVHFIYAREGRQSGEAFVELESEDDVKMAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR + G YI++F S E+D L
Sbjct: 72 KKDRESTGHPYIKVFKSHRTELDWVL 97
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+R+RGLP+ A ++ I +FF L+ +HI + D R TGEA VEFA E + AAM+K
Sbjct: 290 CVRMRGLPYKATENHIYNFFSP--LNPVRVHIEIGPDERVTGEADVEFATHEGAVAAMSK 347
Query: 232 DRMTLGSRYIELFPSS 247
DR + R IELF +S
Sbjct: 348 DRANMQHRCIELFLNS 363
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
VR+RGLP+ TE + FF L+ V V + + + + TGEA A+ ++R
Sbjct: 290 CVRMRGLPYKATENHIYNFFSPLNPVRVHIEIGPDERVTGEADVEFATHEGAVAAMSKDR 349
Query: 117 QNMGRRYVEVF-RSKRQEYYKAIANEV 142
NM R +E+F S Y A +++V
Sbjct: 350 ANMQHRCIELFLNSTTGASYGAYSSQV 376
>gi|397500915|ref|XP_003821148.1| PREDICTED: epithelial splicing regulatory protein 1-like [Pan
paniscus]
Length = 422
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 110/203 (54%), Gaps = 22/203 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 284
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 285 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 328
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A+ K
Sbjct: 329 MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 388
Query: 232 DRMTLGSRYIELFPSSHEEMDEA 254
+ LG RYIELF S+ E+ +
Sbjct: 389 HKDLLGKRYIELFRSTAAEVQQV 411
>gi|189238842|ref|XP_970801.2| PREDICTED: similar to fusilli CG8205-PD [Tribolium castaneum]
Length = 683
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 227 VVRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGEALIKFESQEHRDMALKR 286
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ + S+ + + +AV I+R
Sbjct: 287 HKHHIGPRYIEVYRASGEDFLSVAGGKSSEAQAFL-------------SRGAAV---IVR 330
Query: 175 LRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ ++DFF + + + DGR TG+AFV FA+ D+ A
Sbjct: 331 MRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDAPKA 390
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
++K R +GSRYIELF S+ E+ + L+R
Sbjct: 391 LSKHRECIGSRYIELFRSTTAEVQQVLNR 419
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 23/222 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFF----HGLDIVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+DCT V +FF + ++D VLFV K + + TG+AF +
Sbjct: 328 IVRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDA 387
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL ++R+ +G RY+E+FRS E + + N + R P P +
Sbjct: 388 PKALSKHRECIGSRYIELFRSTTAEV-QQVLNRSLEARTYEPEPLPPLLPHMPLLPQHYI 446
Query: 169 HTG----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANA 222
+G +RLRGLP+ A + I++F ++ + +H+ N+ G+P+GEAF++ ++
Sbjct: 447 TSGTKKECIRLRGLPYEAQVEHILEFLGEYAKNIIFQGVHMVYNAQGQPSGEAFIQM-DS 505
Query: 223 EDSKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALSRG 258
E S A+ + MT G RYIE+F S E+M+ L+ G
Sbjct: 506 EQSACITAQQKHHRYMTFGKKQRYIEVFQCSGEDMNLVLTGG 547
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
P S D+ DS ++R RGLP+ + DI FF +++ + + +++ GR GE
Sbjct: 213 PGICSKDDEIDS---NCVVRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGE 269
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
A ++F + E A+ + + +G RYIE++ +S E+
Sbjct: 270 ALIKFESQEHRDMALKRHKHHIGPRYIEVYRASGED 305
>gi|312081197|ref|XP_003142925.1| RNA binding protein [Loa loa]
gi|307761913|gb|EFO21147.1| RNA binding protein [Loa loa]
Length = 547
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 20/197 (10%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNRQ 117
+RLRGLPF E DV F GL++ V F + + +GE + L + A + ++Q
Sbjct: 63 IRLRGLPFSAKEDDVRAFLEGLEVRSVTFTLTSMGRASGECYVELVDKAAAEEAKRFDKQ 122
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
M RY+EVF S+V + H I + G + ++RLRG
Sbjct: 123 EMNNRYIEVFNVTE-----------SEVVWMTRHNVIRK------GDQDTPYNFVVRLRG 165
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
+PFSA DD+ +FF +++ + I GRP+GEAFV FA+ + ++ A+ ++R +G
Sbjct: 166 IPFSATNDDVKEFFTGLEVAD--VVIDKELGGRPSGEAFVRFASKQHAEMALERNRNNMG 223
Query: 238 SRYIELFPSSHEEMDEA 254
SRY+E+F SS +E++++
Sbjct: 224 SRYVEVFRSSGDELEKS 240
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 111/247 (44%), Gaps = 59/247 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNR 116
VVRLRG+PF T DV EFF GL++ DV+ + + +GEAF + AL+RNR
Sbjct: 160 VVRLRGIPFSATNDDVKEFFTGLEVADVVIDKELGGRPSGEAFVRFASKQHAEMALERNR 219
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEV---SDVRGGSPHRSIPRAKSH------------- 160
NMG RYVEVFRS E K+ + + +R + RS P +S
Sbjct: 220 NNMGSRYVEVFRSSGDELEKSKEGHIAPPTSLRSLAAERSFPAPRSEPIPLRFATAKLGG 279
Query: 161 ------DEGKDSAVHTGILRLRGLP----------------------------------F 180
+E + G+ R R +P +
Sbjct: 280 VRPYRREEYGGPLRNVGMSRPRAVPYDVPYSRYSRFQDYSYDDDFDCDDPAKVYMRGLPY 339
Query: 181 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240
SA DI DFFK E I + N D RP+G+A V F +++ AM++++ +G+RY
Sbjct: 340 SANALDIEDFFKPLNCVE--IQLGFNEDRRPSGDACVIFGTLAEARDAMSRNKQCIGNRY 397
Query: 241 IELFPSS 247
IELF ++
Sbjct: 398 IELFTAA 404
>gi|270009942|gb|EFA06390.1| hypothetical protein TcasGA2_TC009268 [Tribolium castaneum]
Length = 751
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 227 VVRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGEALIKFESQEHRDMALKR 286
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ + S+ + + +AV I+R
Sbjct: 287 HKHHIGPRYIEVYRASGEDFLSVAGGKSSEAQAFL-------------SRGAAV---IVR 330
Query: 175 LRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ ++DFF + + + DGR TG+AFV FA+ D+ A
Sbjct: 331 MRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDAPKA 390
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
++K R +GSRYIELF S+ E+ + L+R
Sbjct: 391 LSKHRECIGSRYIELFRSTTAEVQQVLNR 419
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 23/222 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFF----HGLDIVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+DCT V +FF + ++D VLFV K + + TG+AF +
Sbjct: 328 IVRMRGLPYDCTAKQVLDFFASGENSCTVLDGTEGVLFVRKPDGRATGDAFVLFASESDA 387
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL ++R+ +G RY+E+FRS E + + N + R P P +
Sbjct: 388 PKALSKHRECIGSRYIELFRSTTAEV-QQVLNRSLEARTYEPEPLPPLLPHMPLLPQHYI 446
Query: 169 HTG----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANA 222
+G +RLRGLP+ A + I++F ++ + +H+ N+ G+P+GEAF++ ++
Sbjct: 447 TSGTKKECIRLRGLPYEAQVEHILEFLGEYAKNIIFQGVHMVYNAQGQPSGEAFIQM-DS 505
Query: 223 EDSKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALSRG 258
E S A+ + MT G RYIE+F S E+M+ L+ G
Sbjct: 506 EQSACITAQQKHHRYMTFGKKQRYIEVFQCSGEDMNLVLTGG 547
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
P S D+ DS ++R RGLP+ + DI FF +++ + + +++ GR GE
Sbjct: 213 PGICSKDDEIDS---NCVVRARGLPWQSSDQDIAKFFSGLNVAKGGVALCLSAQGRRNGE 269
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
A ++F + E A+ + + +G RYIE++ +S E+
Sbjct: 270 ALIKFESQEHRDMALKRHKHHIGPRYIEVYRASGED 305
>gi|147906713|ref|NP_001086923.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus laevis]
gi|50417963|gb|AAH77770.1| Hnrph2-prov protein [Xenopus laevis]
gi|84569955|gb|AAI10708.1| Hnrph2 protein [Xenopus laevis]
Length = 456
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 107/199 (53%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVL----FVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ ++ FF I + L F++ + + +GEAF + L
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLGL 70
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG RYVEVF+S E + + + SP D+A + G
Sbjct: 71 KKDRATMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 111
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 112 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 172 KERIGHRYIEIFKSSRAEV 190
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 111/242 (45%), Gaps = 55/242 (22%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCV-------------- 101
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF
Sbjct: 112 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171
Query: 102 ---LGY------------------PLQVDFALQR----NRQNMGRRYVEV---FRSKRQE 133
+G+ P + F +QR +R GR Y + F R+
Sbjct: 172 KERIGHRYIEIFKSSRAEVRTHYDPPRKLFGMQRPGPYDRPGAGRGYNNLGRGFDRMRRG 231
Query: 134 YYKAIANEVSDVRG------GSPHRSIPRAKS-HDEGKDSAVHTG-ILRLRGLPFSAGKD 185
Y + D G G+ R + S + +G TG + +RGLP+ A +
Sbjct: 232 AYGGGYSGYEDYNGYNEYAFGTDQRFGRVSDSRYGDGTSFQSTTGHCVHMRGLPYRATET 291
Query: 186 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245
DI FF L+ +HI + +DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF
Sbjct: 292 DIYTFFSP--LNPVRVHIEIGADGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFL 349
Query: 246 SS 247
+S
Sbjct: 350 NS 351
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D+I +FF + ++ IH +GRP+GEAFVEF ED K +
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSECKIANGLSGIHFIYTREGRPSGEAFVEFETEEDLKLGL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 71 KKDRATMGHRYVEVFKSNNVEMDWVL 96
>gi|395521342|ref|XP_003764777.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Sarcophilus harrisii]
Length = 465
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVH----KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ DV FF G I + V +H + + +GEAF L +++ AL
Sbjct: 11 VVKVRGLPWSCSASDVQNFFSGCRIRNGVAGIHFMYTREGRPSGEAFVELESEEEIELAL 70
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++++ M RYVEVFRS E + R+ P S D D G
Sbjct: 71 KKHKETMAHRYVEVFRSNGVEMDWTLK------------RTAP--SSPDPAGD-----GY 111
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF+ K+DI++FF + + I + ++ G+ +GEAFV+FA+ E ++ A+ K
Sbjct: 112 VRLRGLPFNCNKEDIVEFFSGLEIMPNGIMLQVDFRGKNSGEAFVQFASQEIAEKALKKH 171
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 172 KEKMGHRYIEIFKSSQAEV 190
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLP+ A + DI DFF L +I + +DGR TGEA VEFA ED+ AAM+KD
Sbjct: 284 VHMRGLPYKATEKDIYDFFSP--LKPVGAYIEVGADGRVTGEADVEFATHEDAVAAMSKD 341
Query: 233 RMTLGSRYIELFPSSHEEMDEAL 255
+ + RYIELF +S D +
Sbjct: 342 KANMQHRYIELFLNSVAAADSGV 364
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D+ +FF + IH +GRP+GEAFVE + E+ + A+
Sbjct: 11 VVKVRGLPWSCSASDVQNFFSGCRIRNGVAGIHFMYTREGRPSGEAFVELESEEEIELAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
K + T+ RY+E+F S+ EMD L R
Sbjct: 71 KKHKETMAHRYVEVFRSNGVEMDWTLKR 98
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDF 110
Q P V +RGLP+ TE D+ +FF L V V + + TGEA
Sbjct: 277 QSPAGHFVHMRGLPYKATEKDIYDFFSPLKPVGAYIEVGADGRVTGEADVEFATHEDAVA 336
Query: 111 ALQRNRQNMGRRYVEVF 127
A+ +++ NM RY+E+F
Sbjct: 337 AMSKDKANMQHRYIELF 353
>gi|341882686|gb|EGT38621.1| hypothetical protein CAEBREN_04314 [Caenorhabditis brenneri]
Length = 591
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 31/214 (14%)
Query: 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDF 110
S PP VRLRGLPF+ TE D+ EFF+GL I V FV + GEA+
Sbjct: 59 SAPPKSQYVRLRGLPFNATEKDIHEFFNGLTIKRVKFVCTTGRPNGEAYVEFETKEDAGK 118
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
++ +R+ M RY+E+F ++P +++ E +
Sbjct: 119 GMENDRKEMSSRYIEIF-------------------------TVPESEAELEFRPEPDGV 153
Query: 171 G----ILRLRGLPFSAGKDDIMDFFK--DFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
G ++RLRG+P+S ++D++ FF D +E I T RP+GEAFV FA
Sbjct: 154 GEENHVVRLRGIPWSCKEEDVLQFFAGLDPPPAETVIGGTGGPKSRPSGEAFVRFATQAA 213
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++ AM + +G+RY+E+F SS E + A G
Sbjct: 214 AEKAMEYNNRHMGTRYVEVFMSSMVEFNRAKGGG 247
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 103/234 (44%), Gaps = 49/234 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-----HKNNKFTGEAFCVLGYPLQVDFAL 112
VVRLRG+P+ C E DV +FF GLD V ++ +GEAF + A+
Sbjct: 159 VVRLRGIPWSCKEEDVLQFFAGLDPPPAETVIGGTGGPKSRPSGEAFVRFATQAAAEKAM 218
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVS----DVRGGSPHRSIPRAKS--------- 159
+ N ++MG RYVEVF S E+ +A + + G P S+ R+ S
Sbjct: 219 EYNNRHMGTRYVEVFMSSMVEFNRAKGGGSAAGSYERTGIRPLMSLDRSDSGYGRGGSYG 278
Query: 160 ----------------HDEGKDSAVHTGI-------------LRLRGLPFSAGKDDIMDF 190
D G S G + +RGLP+ A + + F
Sbjct: 279 GYGGYDDYSRGAYGGHQDYGYSSYNQGGYGGDYGRSNDDPLRIYMRGLPYDADQYAVEAF 338
Query: 191 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
F L SI + +N GRP+G+A EF + D +A ++++ +G RY+ELF
Sbjct: 339 FS--PLRCHSIKLGVNETGRPSGDAIAEFDSFGDLQAGLSRNNQRMGRRYVELF 390
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLP+D + V FF L + L V++ + +G+A + L RN Q
Sbjct: 321 IYMRGLPYDADQYAVEAFFSPLRCHSIKLGVNETGRPSGDAIAEFDSFGDLQAGLSRNNQ 380
Query: 118 NMGRRYVEVFRSK 130
MGRRYVE+F ++
Sbjct: 381 RMGRRYVELFDTR 393
>gi|195334671|ref|XP_002034000.1| GM20128 [Drosophila sechellia]
gi|194125970|gb|EDW48013.1| GM20128 [Drosophila sechellia]
Length = 885
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 26/210 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 273 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 332
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 333 HKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 376
Query: 175 LRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+RGLP+ A ++DFF VL + + DGR TG+AFV FAN D+
Sbjct: 377 MRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDAPK 436
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 437 ALGRHRESIGQRYIELFRSTTAEVQQVLNR 466
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 118/261 (45%), Gaps = 61/261 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+D T V +FF H LD + VLFV K + + TG+AF +
Sbjct: 374 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 433
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV--SDVRGGSPHRSIP---------- 155
AL R+R+++G+RY+E+FRS E + + + + G H P
Sbjct: 434 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 493
Query: 156 --------RAKSHDEGKD----------------------SAVHTGILRLRGLPFSAGKD 185
+ SH G S +RLRGLP+ A +
Sbjct: 494 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 553
Query: 186 DIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS- 238
I+ F DF + +H+ +N+ G+P+GEAF++ + E+S A+ R M G
Sbjct: 554 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCAQRRHHHYMMFGKK 612
Query: 239 -RYIELFPSSHEEMDEALSRG 258
RYIE+F S ++M+ L+ G
Sbjct: 613 YRYIEVFQCSGDDMNMVLNGG 633
>gi|341899985|gb|EGT55920.1| hypothetical protein CAEBREN_28420 [Caenorhabditis brenneri]
Length = 591
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 31/214 (14%)
Query: 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDF 110
S PP VRLRGLPF+ TE D+ EFF+GL I V FV + GEA+
Sbjct: 59 SAPPKSQYVRLRGLPFNATEKDIHEFFNGLTIKRVKFVCTTGRPNGEAYVEFETKEDAGK 118
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
++ +R+ M RY+E+F ++P +++ E +
Sbjct: 119 GMENDRKEMSSRYIEIF-------------------------TVPESEAELEFRPEPDGV 153
Query: 171 G----ILRLRGLPFSAGKDDIMDFFK--DFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
G ++RLRG+P+S ++D++ FF D +E I T RP+GEAFV FA
Sbjct: 154 GEENHVVRLRGIPWSCKEEDVLQFFAGLDPPPAETVIGGTGGPKSRPSGEAFVRFATQAA 213
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++ AM + +G+RY+E+F SS E + A G
Sbjct: 214 AEKAMEYNNRHMGTRYVEVFMSSMVEFNRAKGGG 247
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 103/234 (44%), Gaps = 49/234 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-----HKNNKFTGEAFCVLGYPLQVDFAL 112
VVRLRG+P+ C E DV +FF GLD V ++ +GEAF + A+
Sbjct: 159 VVRLRGIPWSCKEEDVLQFFAGLDPPPAETVIGGTGGPKSRPSGEAFVRFATQAAAEKAM 218
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVS----DVRGGSPHRSIPRAKS--------- 159
+ N ++MG RYVEVF S E+ +A + + G P S+ R+ S
Sbjct: 219 EYNNRHMGTRYVEVFMSSMVEFNRAKGGGSAAGSYERTGIRPLMSLDRSDSGYGRGGSYG 278
Query: 160 ----------------HDEGKDSAVHTGI-------------LRLRGLPFSAGKDDIMDF 190
D G S G + +RGLP+ A + + F
Sbjct: 279 GYGGYDDYSRGAYGGHQDYGYSSYNQGGYGGDYGRSNDDPLRIYMRGLPYDADQYAVEAF 338
Query: 191 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
F L SI + +N GRP+G+A EF + D +A ++++ +G RY+ELF
Sbjct: 339 FS--PLRCHSIKLGVNETGRPSGDAIAEFDSFGDLQAGLSRNNQRMGRRYVELF 390
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLP+D + V FF L + L V++ + +G+A + L RN Q
Sbjct: 321 IYMRGLPYDADQYAVEAFFSPLRCHSIKLGVNETGRPSGDAIAEFDSFGDLQAGLSRNNQ 380
Query: 118 NMGRRYVEVFRSK 130
MGRRYVE+F ++
Sbjct: 381 RMGRRYVELFDTR 393
>gi|308477529|ref|XP_003100978.1| CRE-HRPF-2 protein [Caenorhabditis remanei]
gi|308264322|gb|EFP08275.1| CRE-HRPF-2 protein [Caenorhabditis remanei]
Length = 621
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 111/223 (49%), Gaps = 14/223 (6%)
Query: 42 NPPPAYGYVSQPPPFP--VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAF 99
N P +S PP VRLRGLPF+ TE D+ EFF GL + V FV + GEA+
Sbjct: 57 NSSPVPNKISSGPPLKGQYVRLRGLPFNATEKDIQEFFSGLGVKRVKFVCTTGRPNGEAY 116
Query: 100 CVLGYPLQVDFALQRNRQNMGRRYVEV--FRSKRQEYYKAIANEVSDVRGGSPHRSIPRA 157
A++ +R+ M RY+E K++ + V+DV G R P
Sbjct: 117 VEFKTQDDAGKAMENDRKEMSNRYIESEFLIGKQENNSNILVFSVTDVEGEFEFRPDP-- 174
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEA 215
+G H ++RLRG+P+S ++DI FF + +E I T RP+GEA
Sbjct: 175 ----DGNGEENH--VVRLRGIPWSCKEEDINQFFDGLEPLPAEIVIGGTGGPRSRPSGEA 228
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
FV FA ++AAM + +G+RYIE+F SS E++ A G
Sbjct: 229 FVRFATQAAAEAAMEYNNRHMGTRYIEVFMSSMVELNRAKGGG 271
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 103/243 (42%), Gaps = 58/243 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-----HKNNKFTGEAFCVLGYPLQVDFAL 112
VVRLRG+P+ C E D+ +FF GL+ + V ++ +GEAF + A+
Sbjct: 183 VVRLRGIPWSCKEEDINQFFDGLEPLPAEIVIGGTGGPRSRPSGEAFVRFATQAAAEAAM 242
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVS----DVRGGSPHRSIPRAKS--------- 159
+ N ++MG RY+EVF S E +A S + G P S+ R+ S
Sbjct: 243 EYNNRHMGTRYIEVFMSSMVELNRAKGGGSSAGSYERTGIRPLMSLVRSDSGYGQARGGS 302
Query: 160 -------------------------------------HDEGKDSAVHTGI-LRLRGLPFS 181
D GK A + + +RGLP+
Sbjct: 303 GGYGSGGYSGGYDEYSQGAYGRQDYGGYSSYDQGGYGSDYGKGGASDEPLRIYMRGLPYD 362
Query: 182 AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 241
A I FF L SI + +N GRP+G+A EF + D +A ++K+ +G RY+
Sbjct: 363 ADHYAIEAFFSP--LRCHSIKLGINDTGRPSGDAIAEFDSYNDLQAGLSKNNQRMGRRYV 420
Query: 242 ELF 244
ELF
Sbjct: 421 ELF 423
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLP+D + FF L + L ++ + +G+A + L +N Q
Sbjct: 354 IYMRGLPYDADHYAIEAFFSPLRCHSIKLGINDTGRPSGDAIAEFDSYNDLQAGLSKNNQ 413
Query: 118 NMGRRYVEVFRSK 130
MGRRYVE+F ++
Sbjct: 414 RMGRRYVELFDTR 426
>gi|393908924|gb|EFO28044.2| heterogeneous nuclear ribonucleoprotein H [Loa loa]
Length = 370
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 114/205 (55%), Gaps = 17/205 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--HGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+++ RGLP+ CTE D+ EFF I + L ++ + +GE + V DFAL +
Sbjct: 7 IMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGYVVFSSREDYDFALTK 66
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+++ +G+RYVE+ + +++ SD G P A + G++ T I+R
Sbjct: 67 DKKYIGKRYVEL---------QQVSSMESDYDDGDRRYGGPVADPNLPGRE----TSIVR 113
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDR 233
L GLP+ K++I+ FF+ +++ I +T + G+P GEAFV F + + + A+AK++
Sbjct: 114 LGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFTDEDSASKALAKNK 173
Query: 234 MTLGSRYIELFPSSHEEMDEALSRG 258
+ RY++++PSS+ EM AL G
Sbjct: 174 EYIQHRYVDIYPSSYGEMLRALDGG 198
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+R+RGLP+ A + DI+DFF+ + + +D RP+GEA VEF N D AAM +
Sbjct: 296 CIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTD-RPSGEAIVEFRNRADFDAAMQR 354
Query: 232 DRMTLGSRYIELFP 245
+R +GSRY+EL P
Sbjct: 355 NRNYMGSRYVELIP 368
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 34 PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLD--IVDVLFVHKN 91
PP PP Y + PP + +R+RGLP+ TE D+ +FF L +DVL+ +
Sbjct: 273 PPMGGHRGYSPPRRRYTTPPPEY-CIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGT 331
Query: 92 NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
++ +GEA D A+QRNR MG RYVE+
Sbjct: 332 DRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 367
>gi|195381217|ref|XP_002049351.1| GJ21539 [Drosophila virilis]
gi|194144148|gb|EDW60544.1| GJ21539 [Drosophila virilis]
Length = 982
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 109/209 (52%), Gaps = 25/209 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 339
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 340 HKHHIGSRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 383
Query: 175 LRGLPFSAGKDDIMDFFKD-----FVL-SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ ++DFF VL + + DGR TG+AFV FAN DS A
Sbjct: 384 MRGLPYDCTPKQVLDFFTTGEAPCHVLDGNEGVLFVKKPDGRATGDAFVLFANESDSSKA 443
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 444 LGRHRESIGQRYIELFRSTTAEVQQVLNR 472
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 121/258 (46%), Gaps = 58/258 (22%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP+DCT V +FF H LD + VLFV K + + TG+AF +
Sbjct: 381 IIRMRGLPYDCTPKQVLDFFTTGEAPCHVLDGNEGVLFVKKPDGRATGDAFVLFANESDS 440
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYK-------------------------------- 136
AL R+R+++G+RY+E+FRS E +
Sbjct: 441 SKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKTYESNNHGQPPLIAQLPTMQLPL 500
Query: 137 ------AIANEVSDVRGGSPHRSIPRAKSHDEGK--DSAVHTGILRLRGLPFSAGKDDIM 188
A + ++ + + H ++ +H S +RLRGLP+ A + I+
Sbjct: 501 LPQVGAAAGHALNPLTANASHANLCPQLTHAPQHLITSGTTKNCIRLRGLPYEAMVEHIL 560
Query: 189 DFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS--RY 240
F DF + +H+ +N+ G+P+GEAF++ ++EDS A+ + M G RY
Sbjct: 561 HFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DSEDSARLCAQRKHNQFMVFGKKFRY 619
Query: 241 IELFPSSHEEMDEALSRG 258
IE+F S ++M+ L+ G
Sbjct: 620 IEVFQCSGDDMNHVLNGG 637
>gi|157129243|ref|XP_001655329.1| hypothetical protein AaeL_AAEL011420 [Aedes aegypti]
gi|108872264|gb|EAT36489.1| AAEL011420-PA [Aedes aegypti]
Length = 894
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A FF GL++ L + + GEA D AL+R
Sbjct: 267 IVRARGLPWQSSDQDIARFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMALKR 326
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ V GG A + + S I+R
Sbjct: 327 HKHHIGNRYIEVYRATGEDFLA--------VAGG--------ASNEAQAFLSKGAQVIIR 370
Query: 175 LRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ +++FF + + D I DGR TG+AFV F+ D+ A
Sbjct: 371 MRGLPYDCTAKQVLEFFANGDNNCTVLDGADGILFVKKPDGRATGDAFVLFSQETDAPKA 430
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
++K R ++G RYIELF S+ E+ + L+R
Sbjct: 431 LSKHRESIGQRYIELFRSTTAEVQQVLNR 459
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 25/225 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLD----IVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP+DCT V EFF D ++D +LFV K + + TG+AF +
Sbjct: 368 IIRMRGLPYDCTAKQVLEFFANGDNNCTVLDGADGILFVKKPDGRATGDAFVLFSQETDA 427
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL ++R+++G+RY+E+FRS E + + + P + A +
Sbjct: 428 PKALSKHRESIGQRYIELFRSTTAEVQQVLNRSMDPKTYEPPQPPLIAALPPVQLPLLPQ 487
Query: 169 HT-------GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF 219
H +RLRGLP+ A + I+ F +DF + +H+ N+ G+ GEAF++
Sbjct: 488 HVITSGTEKNCIRLRGLPYEAKVEHILHFLEDFAKNIVYQGVHLVYNAQGQFNGEAFIQM 547
Query: 220 ANAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALSRG 258
++E + A+ + M G RYIE+F S ++M+ L+ G
Sbjct: 548 -DSETAAYQSAQQKHHKNMMFGKKQRYIEVFQCSGDDMNMVLNGG 591
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T I+R RGLP+ + DI FF+ +++ + + ++ GR GEA V F + E A+
Sbjct: 265 TCIVRARGLPWQSSDQDIARFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMAL 324
Query: 230 AKDRMTLGSRYIELFPSSHEE 250
+ + +G+RYIE++ ++ E+
Sbjct: 325 KRHKHHIGNRYIEVYRATGED 345
>gi|24653901|ref|NP_725479.1| fusilli, isoform C [Drosophila melanogaster]
gi|21645394|gb|AAM70980.1| fusilli, isoform C [Drosophila melanogaster]
Length = 891
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 26/210 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 383
Query: 175 LRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+RGLP+ A ++DFF VL + + DGR TG+AFV FAN D+
Sbjct: 384 MRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDAPK 443
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 444 ALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 118/261 (45%), Gaps = 61/261 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+D T V +FF H LD + VLFV K + + TG+AF +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV--SDVRGGSPHRSIP---------- 155
AL R+R+++G+RY+E+FRS E + + + + G H P
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 156 --------RAKSHDEGKD----------------------SAVHTGILRLRGLPFSAGKD 185
+ SH G S +RLRGLP+ A +
Sbjct: 501 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 560
Query: 186 DIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS- 238
I+ F DF + +H+ +N+ G+P+GEAF++ + E+S A+ R M G
Sbjct: 561 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCAQRRHNHYMMFGKK 619
Query: 239 -RYIELFPSSHEEMDEALSRG 258
RYIE+F S ++M+ L+ G
Sbjct: 620 YRYIEVFQCSGDDMNMVLNGG 640
>gi|118090272|ref|XP_420600.2| PREDICTED: G-rich sequence factor 1 [Gallus gallus]
Length = 410
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 105/212 (49%), Gaps = 27/212 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV LRGLPFD TE D+A+FF GL I D+ FV++ + TGEA+ P V AL R+++
Sbjct: 190 VVLLRGLPFDSTEDDIADFFAGLRITDMTFVYRGERKTGEAYVQFAAPEMVAKALLRHKE 249
Query: 118 NMGRRYVEVFRSKRQEYYKAIA------------------NEVSDVRGGSPHRSIPRAKS 159
M RY+EV+ S ++E + ++ E+ RG S R A
Sbjct: 250 YMENRYIEVYISTKREMQRHLSLRKEMIRLRRELGSTAEERELDYTRGSSAEREKEVASE 309
Query: 160 HDEGKDSAVHTG-------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 212
E + +G + +RG P DI+DFF L I I NSDG T
Sbjct: 310 AAESSGLSSQSGSILSSLRTVHVRGFPPQVSAQDIVDFFAP--LKPTRILIEYNSDGVAT 367
Query: 213 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
GEA V F + +D+ AAMAK+R L +E+F
Sbjct: 368 GEADVHFESYDDAVAAMAKERAQLQFGTVEVF 399
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 40/235 (17%)
Query: 38 SFMYNPPPAYGYVSQPPPFP----------VVRLRGLPFDCTEVDVAEFFHGLDIVD--- 84
S + + P G +++ P P ++R G PF CT+ ++ FF I +
Sbjct: 61 SQVIDSPTQEGQLAEQDPEPPKEENEDSVFLIRAHGFPFACTKKEMMAFFDSCKIRNGEN 120
Query: 85 --VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV 142
++++ + G+A L V AL++N + MG RYV+V +E+
Sbjct: 121 GIHFLLNRDGRRRGDALIELESKADVQKALEKNLRYMGTRYVKV-------------HEI 167
Query: 143 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 202
D +S+ R +S + G++ LRGLPF + +DDI DFF +++
Sbjct: 168 HDKDVDGLLQSL-RYESE------VMSDGVVLLRGLPFDSTEDDIADFFAGLRITD---- 216
Query: 203 ITMNSDG-RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 256
+T G R TGEA+V+FA E A+ + + + +RYIE++ S+ EM LS
Sbjct: 217 MTFVYRGERKTGEAYVQFAAPEMVAKALLRHKEYMENRYIEVYISTKREMQRHLS 271
>gi|281363439|ref|NP_001163161.1| fusilli, isoform G [Drosophila melanogaster]
gi|272432494|gb|ACZ94433.1| fusilli, isoform G [Drosophila melanogaster]
Length = 860
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 26/210 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 383
Query: 175 LRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+RGLP+ A ++DFF VL + + DGR TG+AFV FAN D+
Sbjct: 384 MRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDAPK 443
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 444 ALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 36/233 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+D T V +FF H LD + VLFV K + + TG+AF +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR----GGS----------PHRS 153
AL R+R+++G+RY+E+FRS E + + N D + GG P
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVL-NRSMDPKNYESGGGHSQPPLIAQLPTMQ 499
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRP 211
+P H S +RLRGLP+ A + I+ F DF + +H+ +N+ G+P
Sbjct: 500 LPLLPQHL--ITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQP 557
Query: 212 TGEAFVEFANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 258
+GEAF++ + E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 558 SGEAFIQM-DLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 609
>gi|17865825|ref|NP_524691.1| fusilli, isoform D [Drosophila melanogaster]
gi|24653906|ref|NP_725481.1| fusilli, isoform E [Drosophila melanogaster]
gi|24653908|ref|NP_725482.1| fusilli, isoform F [Drosophila melanogaster]
gi|75021514|sp|Q9BJZ5.1|FUSIL_DROME RecName: Full=RNA-binding protein fusilli
gi|13183640|gb|AAK15280.1|AF321979_1 fusilli [Drosophila melanogaster]
gi|21645395|gb|AAM70981.1| fusilli, isoform D [Drosophila melanogaster]
gi|21645396|gb|AAM70982.1| fusilli, isoform E [Drosophila melanogaster]
gi|21645397|gb|AAM70983.1| fusilli, isoform F [Drosophila melanogaster]
Length = 967
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 26/210 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 383
Query: 175 LRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+RGLP+ A ++DFF VL + + DGR TG+AFV FAN D+
Sbjct: 384 MRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDAPK 443
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 444 ALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 118/261 (45%), Gaps = 61/261 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+D T V +FF H LD + VLFV K + + TG+AF +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV--SDVRGGSPHRSIP---------- 155
AL R+R+++G+RY+E+FRS E + + + + G H P
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 156 --------RAKSHDEGKD----------------------SAVHTGILRLRGLPFSAGKD 185
+ SH G S +RLRGLP+ A +
Sbjct: 501 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 560
Query: 186 DIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS- 238
I+ F DF + +H+ +N+ G+P+GEAF++ + E+S A+ R M G
Sbjct: 561 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCAQRRHNHYMMFGKK 619
Query: 239 -RYIELFPSSHEEMDEALSRG 258
RYIE+F S ++M+ L+ G
Sbjct: 620 YRYIEVFQCSGDDMNMVLNGG 640
>gi|449280564|gb|EMC87832.1| G-rich sequence factor 1, partial [Columba livia]
Length = 331
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 105/221 (47%), Gaps = 34/221 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VV LRGLPF TE D+A+FF GL I D+ FV++ + TGEAF P AL R+R+
Sbjct: 108 VVMLRGLPFSSTEDDIADFFSGLKITDIAFVYRGERRTGEAFVQFAAPDMAAKALSRHRE 167
Query: 118 NMGRRYVEVFRSKRQE------YYKAIAN---------EVSDVRGGSPHRSI-------- 154
MG RY+EV+ S++ + Y++ + VS+ R S S
Sbjct: 168 YMGNRYIEVYVSRKHQMQRHVPYHRQLLTYPKVRKEHESVSEERRWSDTASSDAEGENQV 227
Query: 155 -------PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207
P S E S +H + +RG P DI++FF L I + N
Sbjct: 228 CREQTERPGHISESESVSSPLH--FVHMRGFPAQTSAQDIINFFAP--LKPTRIMVEYNC 283
Query: 208 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248
G TGEA V F + ED+ AAMAK+ L IELF + H
Sbjct: 284 HGDATGEADVHFESREDAVAAMAKEGSRLQCSAIELFLNGH 324
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 105/199 (52%), Gaps = 28/199 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +G PF CTE DV FF I + ++++ + G+A L V AL
Sbjct: 9 LIRAQGFPFSCTEEDVLTFFDSCRIRNGENGIHFLLNRDGRRRGDALIELESKADVQRAL 68
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++ + MG RYV+VF EV D S RS+ DE + A++ G+
Sbjct: 69 EKHLRYMGPRYVKVF-------------EVHDSDVESLLRSL-----RDESQ--AINDGV 108
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ LRGLPFS+ +DDI DFF +++ + + R TGEAFV+FA + + A+++
Sbjct: 109 VMLRGLPFSSTEDDIADFFSGLKITDIAF---VYRGERRTGEAFVQFAAPDMAAKALSRH 165
Query: 233 RMTLGSRYIELFPSSHEEM 251
R +G+RYIE++ S +M
Sbjct: 166 REYMGNRYIEVYVSRKHQM 184
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +G PFS ++D++ FF + E+ IH +N DGR G+A +E + D + A+
Sbjct: 9 LIRAQGFPFSCTEEDVLTFFDSCRIRNGENGIHFLLNRDGRRRGDALIELESKADVQRAL 68
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
K +G RY+++F H+ E+L R
Sbjct: 69 EKHLRYMGPRYVKVF-EVHDSDVESLLRS 96
>gi|345308102|ref|XP_001505380.2| PREDICTED: epithelial splicing regulatory protein 2-like
[Ornithorhynchus anatinus]
Length = 729
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 22/206 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ +A FF GL+I L ++ + GEA D AL+R
Sbjct: 247 VIRARGLPWQSSDQHIARFFIGLNIAKGGVALCLNAQGRRNGEALVRFVNSDHRDLALER 306
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV YKA +E + GG+ + ++ I+R
Sbjct: 307 HKHHMGSRYIEV--------YKATGDEFLKIAGGTSNEVAQFLSRENQV--------IIR 350
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSA DD++ F + + DGRPTG+AF FA + +++A+ +
Sbjct: 351 LRGLPFSATPDDVLGFLGPECPVTGGPEGLLFVRYPDGRPTGDAFALFACEDAAQSALRR 410
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIELF S+ E+ + L+R
Sbjct: 411 HKGILGKRYIELFRSTAAEVQQVLNR 436
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 108/210 (51%), Gaps = 9/210 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++RLRGLPF T DV F V +LFV + + + TG+AF + A
Sbjct: 348 IIRLRGLPFSATPDDVLGFLGPECPVTGGPEGLLFVRYPDGRPTGDAFALFACEDAAQSA 407
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+R++ +G+RY+E+FRS E + + +S + + +
Sbjct: 408 LRRHKGILGKRYIELFRSTAAEVQQVLNRYLSAPLIPTLPPPLLPVLPPPYALAGSCVRD 467
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+RLRGLP++AG DD++DF + + +H+ +N GRP+G+AF++ +AE ++ A
Sbjct: 468 CVRLRGLPYTAGIDDVLDFMGEATADIRPHGVHMVLNQQGRPSGDAFIQMKSAERAQVAA 527
Query: 230 AK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + RY+E+FP S +EM L G
Sbjct: 528 QRCHKKMMKERYVEVFPCSGDEMSLVLMGG 557
>gi|351714741|gb|EHB17660.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 396
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 111/215 (51%), Gaps = 32/215 (14%)
Query: 40 MYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKF 94
M P GYV V+LRGLP+ C+ DV F I D V F++ + +
Sbjct: 1 MLGPEGGEGYV--------VKLRGLPWSCSTEDVQNFLSDCTIRDGVAGVHFIYTREGRQ 52
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
+GEAF L V AL+++R++MG RY+EVF+S + E + + SP+
Sbjct: 53 SGEAFVELESEEDVKTALKKDRESMGHRYIEVFKSHKTEMDWVLKHS-------SPN--- 102
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
S D DS V RL GL F K +I+ FF + + I + ++ +G+ TG+
Sbjct: 103 ----STDTANDSFV-----RLWGLSFGCTKGEIVQFFSGLEIVPNGITLPVDPEGKFTGK 153
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 249
AF++FA+ E ++ A+ K + +G RYIE+F SS E
Sbjct: 154 AFLQFASQELAEKALRKHKEKIGHRYIEVFKSSQE 188
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + ED K A+
Sbjct: 11 VVKLRGLPWSCSTEDVQNFLSDCTIRDGVAGVHFIYTREGRQSGEAFVELESEEDVKTAL 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 71 KKDRESMGHRYIEVFKSHKTEMDWVL 96
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+ +RGLP+ A ++DI +FF L+ +HI + +GR TGEA VEFA E++ AAM+
Sbjct: 289 CVHMRGLPYKATENDIYNFFSP--LNAVRVHIEIRPNGRVTGEADVEFATNEEAMAAMSK 346
Query: 231 -KDRMTLGSRYIELFPSS 247
KDR + RYIELF +S
Sbjct: 347 DKDRTNIQHRYIELFLNS 364
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + N + TGEA +
Sbjct: 280 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNAVRVHIEIRPNGRVTGEADVEFATNEE 339
Query: 108 VDFALQ--RNRQNMGRRYVEVF 127
A+ ++R N+ RY+E+F
Sbjct: 340 AMAAMSKDKDRTNIQHRYIELF 361
>gi|402869627|ref|XP_003898853.1| PREDICTED: G-rich sequence factor 1 [Papio anubis]
Length = 606
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 104/217 (47%), Gaps = 47/217 (21%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 352 VVRLRGLPYSCNEKDIVDFFAGLHIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 411
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH------------------------ 151
R+ +G RY+E+F S+R E + + SP
Sbjct: 412 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEMVFEEHEVNEDIRPMT 471
Query: 152 -----------RSIPRA--KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
+ +P ++ D G S++H + +RGLPF A DI++FF
Sbjct: 472 AFENEKEIELPKEVPEKLPEAADFGTMSSLH--FVHMRGLPFQANAQDIINFFAPL---- 525
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+ ITM +S G+ TGEA V F ED+ AAM KDR
Sbjct: 526 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDR 562
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 252 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 311
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 312 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKSSPVVNDGV 352
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 353 VRLRGLPYSCNEKDIVDFFAGLHIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 410
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 411 HREEIGNRYIEIFPSRRNEV 430
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 252 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 311
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 312 EKHRMYMGQRYVEVYEINNEDVD 334
>gi|170587834|ref|XP_001898679.1| fusilli [Brugia malayi]
gi|158593949|gb|EDP32543.1| fusilli, putative [Brugia malayi]
Length = 467
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 26/212 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ T+ D+A+FF GL+I L + + GEA Q + AL+R
Sbjct: 27 IVRTRGLPWQATDHDIAQFFIGLNIAAGGVALCLSPEGRRNGEALVRFEDSEQRELALKR 86
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+R + RY+EV+R+ ++ + A S+ + G A+ I+R
Sbjct: 87 HRHFLHNRYIEVYRATGSDFLQVAAGSNSEA-----------VRFVSRGSTGAM---IVR 132
Query: 175 LRGLPFSAGKDDIMDFFKD----FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+RGLP+ + I++FF + +++ I SDGRPTG+AFV F N E + A+
Sbjct: 133 MRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDNEEAGQKALT 192
Query: 231 KDRMTLGSRYIELF-----PSSHEEMDEALSR 257
K + T+G+RYIELF S+ E+ + ++R
Sbjct: 193 KHKRTIGTRYIELFRQLNYRSTQAEVQQVVNR 224
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 32/208 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFF----HGLDIVD--VLFVHKNN-KFTGEAFCVLGYPLQVDF 110
+VR+RGLP+DCTE + EFF +G + D +LFV+K++ + TG+AF +
Sbjct: 130 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDNEEAGQK 189
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
AL ++++ +G RY+E+F RQ Y++ EV V + S R H + +
Sbjct: 190 ALTKHKRTIGTRYIELF---RQLNYRSTQAEVQQVVNRN-LESDQRMMVHGSSRKDCI-- 243
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
RLRGLP+ A ++I++F L E + HI D +A + A
Sbjct: 244 ---RLRGLPYEAHVENIVEF-----LGETARHIMFQMDSE---------MSAATAAALAH 286
Query: 231 KDRMTLG--SRYIELFPSSHEEMDEALS 256
M +G RYIE+F S E+++ L+
Sbjct: 287 NKYMQIGKKQRYIEVFQCSPEDINLVLT 314
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+ S V I+R RGLP+ A DI FF ++ + + ++ +GR GEA V F ++E
Sbjct: 19 ETSLVSEVIVRTRGLPWQATDHDIAQFFIGLNIAAGGVALCLSPEGRRNGEALVRFEDSE 78
Query: 224 DSKAAMAKDRMTLGSRYIELF 244
+ A+ + R L +RYIE++
Sbjct: 79 QRELALKRHRHFLHNRYIEVY 99
>gi|327271497|ref|XP_003220524.1| PREDICTED: RNA-binding protein 12-like [Anolis carolinensis]
Length = 1418
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 115/226 (50%), Gaps = 24/226 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH--KNNKFTGEAFCVLGY 104
P P+ V + G+PF TE DV +FFHGL D V +L H +NN G F
Sbjct: 293 PLPINPDDLYVSIHGMPFSATESDVKDFFHGLRVDAVHILKDHVGRNN---GNGFVKFCS 349
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + + G H +++ +K
Sbjct: 350 PPDTFEALKRNRMLMIQRYVEVSPATERQWVTAGGHITFKQTMGPSGQNHPSPQTLSMSK 409
Query: 159 SHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S + K S + + L+GLPF + ++DFFK + EDSI+I +G+ G
Sbjct: 410 SPNGQKRSRSRSPHDQGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKALG 469
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
E FVEF N D KAA+ + +G+R+I++ P + + M E + R
Sbjct: 470 EGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITKKAMLEKIEMIR 515
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 6/199 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K GE F AL
Sbjct: 428 CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKALGEGFVEFRNEADYKAALCH 487
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++Q +G R+++V ++ + I E+ R S + + EG+ R
Sbjct: 488 HKQYIGNRFIQVHPITKKAMLEKI--EMIRKRLQSFNYDQREIMINTEGEMGPPKL-CAR 544
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+ +P++ K +I+ F + + E+SI I ++++G+ G+A V+ ED++ + R
Sbjct: 545 ISNIPYNITKMEIIQFLEGLAVDENSIQILVDTNGQGLGQALVQLKTEEDARKSERLHRK 604
Query: 235 TLGSRYIELFPSSHEEMDE 253
L R + L S EEM E
Sbjct: 605 KLNGRDVVLRLISFEEMKE 623
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ + L SS EM + R
Sbjct: 60 TGGAIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G TGEA V F + +++ AA+
Sbjct: 812 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMTTGEAMVAFESRDEAMAAVVD 871
Query: 231 -KDRMTLGSRYIELFPSSHEEMDEALS 256
DR +GSR ++L +++ ++S
Sbjct: 872 LNDR-PIGSRKVKLMAHCVTKVELSIS 897
>gi|312385573|gb|EFR30037.1| hypothetical protein AND_00606 [Anopheles darlingi]
Length = 1660
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 25/209 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 246 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMALKR 305
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ V GG A + + + I+R
Sbjct: 306 HKHHIGSRYIEVYRANGEDFL--------SVAGG--------ASNEAQAFLTKGAQVIIR 349
Query: 175 LRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ ++DFF + + D I DGR TG+AFV F D A
Sbjct: 350 MRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQESDVNKA 409
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
++K R +G RYIELF S+ E+ + L+R
Sbjct: 410 LSKHRELIGQRYIELFRSTTAEVQQVLNR 438
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 25/225 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFF----HGLDIVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP+DCT V +FF + +++D +LFV K + + TG+AF + V
Sbjct: 347 IIRMRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQESDV 406
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR-----SIPRAKSH--- 160
+ AL ++R+ +G+RY+E+FRS E + + N D + P + +P+ +
Sbjct: 407 NKALSKHRELIGQRYIELFRSTTAEV-QQVLNRSMDPKTYEPPQPPLIAQLPQVQMQLLP 465
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVE 218
S +RLRGLP+ A + I+ F DF + +H+ N+ G+ GEAF++
Sbjct: 466 QHVITSGTEKNCIRLRGLPYEAKVEHILHFLDDFAKHIVYQGVHLVYNAQGQFNGEAFIQ 525
Query: 219 F---ANAEDSKAAMAKDRMTLG--SRYIELFPSSHEEMDEALSRG 258
A A S M G RYIE+F S ++M+ L+ G
Sbjct: 526 MDSEAAAYQSAQQKHHKNMMFGKKQRYIEVFQCSGDDMNMVLNGG 570
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T I+R RGLP+ + DI FF+ +++ + + ++ GR GEA V F + E A+
Sbjct: 244 TCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMAL 303
Query: 230 AKDRMTLGSRYIELFPSSHEE 250
+ + +GSRYIE++ ++ E+
Sbjct: 304 KRHKHHIGSRYIEVYRANGED 324
>gi|355705000|gb|EHH30925.1| Heterogeneous nuclear ribonucleoprotein H2 [Macaca mulatta]
Length = 449
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 24/199 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++ LP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVSALPWSCSADEVMRFFSDRKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 173 KERIGHRYIEIFKSSRAEV 191
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++ LP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVSALPWSCSADEVMRFFSDRKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 290 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 347
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 348 DKANMQHRYVELFLNS 363
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 290 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 349
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 350 ANMQHRYVELF 360
>gi|332819574|ref|XP_526590.3| PREDICTED: G-rich sequence factor 1 [Pan troglodytes]
Length = 547
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 113/217 (52%), Gaps = 47/217 (21%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 333 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 392
Query: 116 RQNMGRRYVEVFRSKRQEYY--------KAIAN-----------------EVS-DVRGGS 149
R+ +G RY+E+F S+R E K IA+ EV+ D++ +
Sbjct: 393 REEIGNRYIEIFPSRRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMT 452
Query: 150 PHRS-----IPRA------KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S +P+ ++ D G S++H + +RGLPF A DI++FF
Sbjct: 453 AFESEKEIELPKEVPEKLPEAADFGTASSLH--FVHMRGLPFQANAQDIINFFAPL---- 506
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+ ITM +S G+ TGEA V F ED+ AAM KDR
Sbjct: 507 KPVRITMEYSSSGKATGEADVHFETHEDAVAAMLKDR 543
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 101/200 (50%), Gaps = 27/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 233 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 292
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 293 EKHRMYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKSSPVVNDGV 333
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAK 231
+RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+ K
Sbjct: 334 VRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMANQALLK 391
Query: 232 DRMTLGSRYIELFPSSHEEM 251
R +G+RYIE+FPS E+
Sbjct: 392 HREEIGNRYIEIFPSRRNEV 411
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 233 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 292
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 293 EKHRMYMGQRYVEVYEINNEDVD 315
>gi|47211266|emb|CAF91568.1| unnamed protein product [Tetraodon nigroviridis]
Length = 823
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 18/215 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V L+ LPF CTE+D+ FF GL + V F+ + TG+A P + A++R
Sbjct: 230 VHLQNLPFTCTEMDIRHFFRGLGVDGVRFLKDAQGRHTGKASVKFFSPQESFEAVKRGGG 289
Query: 118 NMGRRYVEVFRSKRQEYYK-----AIANEVSDVRGGSPHRSIP-----RAKSHDEGKDSA 167
MG+R++E+ Q++ + A++ S S P R + EG+D
Sbjct: 290 MMGQRFIEISPGSEQQWASISISDSTASQASHASNKPSVESQPPQQHCRNNAGAEGRDQR 349
Query: 168 VHTG-------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
+ + L+GLP+ A K I +FF + + EDSI+I +GR TGE F+EF
Sbjct: 350 GRSRSPHRQEFCVYLKGLPYEADKKQIKEFFSNLAIIEDSIYIAYGPNGRATGEGFLEFK 409
Query: 221 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+D KAA+ +GSR+I++ P S + M E +
Sbjct: 410 TEQDHKAALGAHMQYMGSRFIQVHPISRKGMLEKI 444
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLP++ + + EFF L I+ D +++ N + TGE F AL
Sbjct: 361 CVYLKGLPYEADKKQIKEFFSNLAIIEDSIYIAYGPNGRATGEGFLEFKTEQDHKAALGA 420
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD---SAVHTG 171
+ Q MG R+++V R K + ++ +R R SH GK S
Sbjct: 421 HMQYMGSRFIQVHPISR----KGMLEKIDAIR--------KREASHGGGKSQDGSKNPRN 468
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ + +P++ K D+ F + L ED++ + +S G G+A + ED++ A
Sbjct: 469 CVHITNIPYNISKKDVRAFLEGVGLYEDTLKVLTDSHGNGLGQAIFQLRTEEDARKAERL 528
Query: 232 DRMTLGSR 239
R L R
Sbjct: 529 HRQKLNGR 536
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
++ + L SS EM + R
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMQNMIDLSR 87
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-- 229
+++L+ +PF+ D+IMDFF + + S+ + + G PTGEA V F N E++ AA+
Sbjct: 748 VVKLQNMPFTVTVDEIMDFFYGYQVVPGSVCLQFSEKGLPTGEAMVAFQNHEEATAAVLD 807
Query: 230 AKDRMTLGSRYIEL 243
DR +G+R +++
Sbjct: 808 LNDR-PIGARKVKI 820
>gi|108743797|gb|ABG02207.1| IP16182p [Drosophila melanogaster]
Length = 694
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 26/210 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 383
Query: 175 LRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+RGLP+ A ++DFF VL + + DGR TG+AFV FAN D+
Sbjct: 384 MRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETDAPK 443
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 444 ALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 118/261 (45%), Gaps = 61/261 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+D T V +FF H LD + VLFV K + + TG+AF +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 440
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV--SDVRGGSPHRSIP---------- 155
AL R+R+++G+RY+E+FRS E + + + + G H P
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 156 --------RAKSHDEGKD----------------------SAVHTGILRLRGLPFSAGKD 185
+ SH G S +RLRGLP+ A +
Sbjct: 501 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 560
Query: 186 DIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS- 238
I+ F DF + +H+ +N+ G+P+GEAF++ + E+S A+ R M G
Sbjct: 561 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCAQRRHNHYMMFGKK 619
Query: 239 -RYIELFPSSHEEMDEALSRG 258
RYIE+F S ++M+ L+ G
Sbjct: 620 YRYIEVFQCSGDDMNMVLNGG 640
>gi|195124401|ref|XP_002006681.1| GI18454 [Drosophila mojavensis]
gi|193911749|gb|EDW10616.1| GI18454 [Drosophila mojavensis]
Length = 1008
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 31/212 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 303 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 362
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 363 HKHHIGSRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 406
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS---------DGRPTGEAFVEFANAEDS 225
+RGLP+ +++FF E H+ S DGR TG+AFV FAN DS
Sbjct: 407 MRGLPYDCTPKQVLEFFTT---GESPCHVLDGSEGVLFVKKPDGRATGDAFVLFANESDS 463
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 464 PKALGRHRESIGQRYIELFRSTTAEVQQVLNR 495
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 121/258 (46%), Gaps = 58/258 (22%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP+DCT V EFF H LD + VLFV K + + TG+AF +
Sbjct: 404 IIRMRGLPYDCTPKQVLEFFTTGESPCHVLDGSEGVLFVKKPDGRATGDAFVLFANESDS 463
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYK-------------------------------- 136
AL R+R+++G+RY+E+FRS E +
Sbjct: 464 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKTYESNNHGQPPLIAQLPTMQLPL 523
Query: 137 ------AIANEVSDVRGGSPHRSI--PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIM 188
A + ++ + + H ++ P + S +RLRGLP+ A + I+
Sbjct: 524 LPQVGAAAGHALNPLTANASHANLCPPLTHAPQHLITSGTTKNCIRLRGLPYEAMVEHIL 583
Query: 189 DFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS--RY 240
F DF + +H+ +N+ G+P+GEAF++ ++EDS A+ + M G RY
Sbjct: 584 HFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DSEDSARLCAQRKHNQFMVFGKKFRY 642
Query: 241 IELFPSSHEEMDEALSRG 258
IE+F S ++M+ L+ G
Sbjct: 643 IEVFQCSGDDMNHVLNGG 660
>gi|334311305|ref|XP_001381494.2| PREDICTED: RNA-binding protein 12 [Monodelphis domestica]
Length = 1413
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMETDVKDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFFS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++ R+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQTHPPPQTLVRSK 412
Query: 159 SHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEPGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF + D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRSESDYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 9/200 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRSESDYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS-PHRSIPRAKSHDEGKDSAVHTGIL 173
++Q MG R+++V ++ + I ++ S R I D H
Sbjct: 491 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREIILNTEGDSSPKLCAH---- 546
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+ +PF+ K DI+ F ++ + E+++HI +++ G+ G+A V+F +D+ A R
Sbjct: 547 -ISNIPFNITKMDILQFLEEIPVDENAVHILVDNTGQGLGQALVQFKTEDDAHKAERLHR 605
Query: 234 MTLGSRYIELFPSSHEEMDE 253
L R L + E+M E
Sbjct: 606 KKLNGREALLHVITLEDMRE 625
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 804 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVD 863
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 864 LNDR-PIGSRKVKLM 877
>gi|449667958|ref|XP_002158900.2| PREDICTED: epithelial splicing regulatory protein 1-like [Hydra
magnipapillata]
Length = 503
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 23/242 (9%)
Query: 21 QRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGL 80
Q L+ +G F S S N GYV +VR RGLP+ ++VDVA FF GL
Sbjct: 183 QHLLKEGHKFLKLE-SVSLTLNDGMPTGYVKDDT---IVRARGLPWQVSDVDVAAFFTGL 238
Query: 81 DIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 137
+I L ++ + GEA D AL+R++ ++ RY+EV++ QE+ K
Sbjct: 239 NIAKGGVALCLNVKGRRNGEALVRFESSEHRDMALRRHKHHLLGRYIEVYKGTAQEFLK- 297
Query: 138 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---F 194
+ G A+ G + I+R+RGLPF A D+++FF D
Sbjct: 298 -------IAKGPAAAMHAAAEFLTNGGEV-----IIRMRGLPFDATVHDVVEFFGDSPKV 345
Query: 195 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
+ ++ + + DG TG+AFV F + + A+ K R +G RY+ELF S+ E+ +
Sbjct: 346 LQGKNGVMLISYPDGASTGDAFVLFETEAEGQFALKKHRENIGKRYVELFRSTRAELQQV 405
Query: 255 LS 256
L+
Sbjct: 406 LT 407
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 93/179 (51%), Gaps = 27/179 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDF 110
++R+RGLPFD T DV EFF G + V +L + + TG+AF + + F
Sbjct: 320 IIRMRGLPFDATVHDVVEFFGDSPKVLQGKNGV-MLISYPDGASTGDAFVLFETEAEGQF 378
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIA------NEVSDVRGGSPHRSIPRAKSHDEG- 163
AL+++R+N+G+RYVE+FRS R E + + V+ V G P P + +D
Sbjct: 379 ALKKHRENIGKRYVELFRSTRAELQQVLTMYNIGYQLVTPVPGQLP---FPGSGLNDRAL 435
Query: 164 ----KDSAVHTGILRLRGLPFSAGKDDIMDF---FKDFVLSEDSIHITMNSDGRPTGEA 215
+ ++ LR+RGLPFSA DI++F +K+ V+ S+HI N + T
Sbjct: 436 INQRLQALMNMSCLRMRGLPFSASHKDILNFLGNYKENVVG--SVHIIYNLQKKFTNNV 492
>gi|395505306|ref|XP_003756983.1| PREDICTED: RNA-binding protein 12 [Sarcophilus harrisii]
Length = 1415
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 24/222 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 296 PLPINPDDLYVSVHGMPFSAMETDVKDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFFS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPH---RSIPRAK 158
P AL+RNR M +RYVEV + +++ A I + S G H +++ R+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQTHPPPQTLVRSK 412
Query: 159 SHDEGKDSAVHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S + + L+GLPF A ++DFFK + EDSI+I +G+ TG
Sbjct: 413 SPSGQKRSRSRSPHEPGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
E FVEF + D KAA+ + + +G+R+I++ P + + M E +
Sbjct: 473 EGFVEFRSESDYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 9/200 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 431 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRSESDYKAALCR 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS-PHRSIPRAKSHDEGKDSAVHTGIL 173
++Q MG R+++V ++ + I ++ S R I D H
Sbjct: 491 HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREIILNTEGDSSPKLCAH---- 546
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+ +PF+ K DI+ F ++ + E+++HI +++ G+ G+A V+F +D+ A R
Sbjct: 547 -ISNIPFNITKMDILQFLEEIPVDENAVHILVDNTGQGLGQALVQFKTEDDAHKAERLHR 605
Query: 234 MTLGSRYIELFPSSHEEMDE 253
L R L + E+M E
Sbjct: 606 KKLNGREALLHVITLEDMRE 625
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 804 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVD 863
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 864 LNDR-PIGSRKVKLM 877
>gi|195488502|ref|XP_002092343.1| GE14142 [Drosophila yakuba]
gi|194178444|gb|EDW92055.1| GE14142 [Drosophila yakuba]
Length = 889
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 26/210 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFECQEHRDMALKR 339
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 340 HKHHIGSRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 383
Query: 175 LRGLPFSAGKDDIMDFFK-------DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+RGLP+ A ++DFF + + + DGR TG+AFV FA+ D+
Sbjct: 384 MRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESDASK 443
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 444 ALCRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 119/261 (45%), Gaps = 61/261 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLD-----IVD----VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+D T V +FF D ++D VLFV K + + TG+AF + +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESD 440
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV--SDVRGGSPHRSIP---------- 155
AL R+R+++G+RY+E+FRS E + + + + G H P
Sbjct: 441 ASKALCRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 156 --------RAKSHDEGKD----------------------SAVHTGILRLRGLPFSAGKD 185
+ SH G S +RLRGLP+ A +
Sbjct: 501 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 560
Query: 186 DIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS- 238
I+ F DF + +H+ +N+ G+P+GEAF++ + E+S A+ R M G
Sbjct: 561 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCAQRRHNHYMMFGKK 619
Query: 239 -RYIELFPSSHEEMDEALSRG 258
RYIE+F S ++M+ L+ G
Sbjct: 620 YRYIEVFQCSGDDMNMVLNGG 640
>gi|291190682|ref|NP_001167168.1| Heterogeneous nuclear ribonucleoprotein H [Salmo salar]
gi|223648432|gb|ACN10974.1| Heterogeneous nuclear ribonucleoprotein H [Salmo salar]
Length = 396
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 105/201 (52%), Gaps = 28/201 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ C+ +V FF I + + F + + +GEAF L + A+
Sbjct: 8 VVRVRGLPWSCSVDEVRRFFSDCKIANNGTSIHFTSTREGRPSGEAFVELENEDDLKIAV 67
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG- 171
+++R+ MG RYVEVF+S E + + G +S TG
Sbjct: 68 KKDRETMGHRYVEVFKSNNVEMDWVMKHS---------------------GPNSPETTGD 106
Query: 172 -ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++RLRGLPF K++I+ F + + I + ++ GR TGEAFV+FA+ + ++ A+
Sbjct: 107 GLVRLRGLPFGCSKEEIVQFLSGLEIVPNGITLPLDFQGRSTGEAFVQFASQDIAEKALK 166
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 167 KHKERIGHRYIEIFKSSRAEV 187
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 111/225 (49%), Gaps = 37/225 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VRLRGLPF C++ ++ +F GL+IV L + + TGEAF + AL++
Sbjct: 108 LVRLRGLPFGCSKEEIVQFLSGLEIVPNGITLPLDFQGRSTGEAFVQFASQDIAEKALKK 167
Query: 115 NRQNMGRRYVEVFRSKRQE-------------------YYKAIANEVSDVRGGSPHRS-- 153
+++ +G RY+E+F+S R E Y + ++ GG S
Sbjct: 168 HKERIGHRYIEIFKSSRAEVRTHYEPQRKPMGMQRPGPYDRPSGGRGYNMMGGRGGGSYD 227
Query: 154 ----------IPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 202
+ + D TG + +RGLP+ A + DI +FF L+ +H
Sbjct: 228 RARRGGYGGGVSDGRYGDSSSSFQSTTGHCVHMRGLPYRATETDIYNFFSP--LNPVRVH 285
Query: 203 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+ + DGR TGEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 286 VEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 330
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S D++ FF D ++ + SIH T +GRP+GEAFVE N +D K A+
Sbjct: 8 VVRVRGLPWSCSVDEVRRFFSDCKIANNGTSIHFTSTREGRPSGEAFVELENEDDLKIAV 67
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD +
Sbjct: 68 KKDRETMGHRYVEVFKSNNVEMDWVM 93
>gi|308498127|ref|XP_003111250.1| CRE-HRPF-1 protein [Caenorhabditis remanei]
gi|308240798|gb|EFO84750.1| CRE-HRPF-1 protein [Caenorhabditis remanei]
Length = 558
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 2/194 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
V+ RGLP++ TE D+ FF G I V +N + +G+A AL+++R++
Sbjct: 7 VQCRGLPWEATEEDLRGFFGGNGIESVDIPKRNGRTSGDATVTFSNEDDYKLALKKDREH 66
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRG 177
+G RY+EVF + ++ GG P R R + H G I+RLRG
Sbjct: 67 LGSRYIEVFPMNSAPRRRGDRDDFRPRGGGPPRDRYSDRGEQHRSGGTGGPDP-IIRLRG 125
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
LPFS DI DF + + D I + RP+GEA++ F E + A + +G
Sbjct: 126 LPFSVTARDINDFLQPLGIVRDGILLPDQQRARPSGEAYIVFDMLESVQIAKQRHMKNIG 185
Query: 238 SRYIELFPSSHEEM 251
RYIE+F ++H E+
Sbjct: 186 HRYIEVFEATHREL 199
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFA 111
P P++RLRGLPF T D+ +F L IV +L + + +GEA+ V V A
Sbjct: 117 PDPIIRLRGLPFSVTARDINDFLQPLGIVRDGILLPDQQRARPSGEAYIVFDMLESVQIA 176
Query: 112 LQRNRQNMGRRYVEVFRSKRQE 133
QR+ +N+G RY+EVF + +E
Sbjct: 177 KQRHMKNIGHRYIEVFEATHRE 198
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+LR+RG+PF A ++D+ DFF+ + + + + ++ R +G+A V F + +D A+ K
Sbjct: 482 VLRMRGVPFRATEEDVYDFFR--PIRPNKVELIRDNQFRASGDARVIFFSRKDYDEALMK 539
Query: 232 DRMTLGSRYIELFP 245
D+ +G RYIE+ P
Sbjct: 540 DKQYMGERYIEMIP 553
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNR 116
V+R+RG+PF TE DV +FF + V + N + +G+A + D AL +++
Sbjct: 482 VLRMRGVPFRATEEDVYDFFRPIRPNKVELIRDNQFRASGDARVIFFSRKDYDEALMKDK 541
Query: 117 QNMGRRYVEVF 127
Q MG RY+E+
Sbjct: 542 QYMGERYIEMI 552
>gi|194882767|ref|XP_001975482.1| GG22342 [Drosophila erecta]
gi|190658669|gb|EDV55882.1| GG22342 [Drosophila erecta]
Length = 892
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 26/210 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 383
Query: 175 LRGLPFSAGKDDIMDFFK-------DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+RGLP+ A ++DFF + + + DGR TG+AFV FA+ D+
Sbjct: 384 MRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESDASK 443
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 444 ALCRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 119/261 (45%), Gaps = 61/261 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLD-----IVD----VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+D T V +FF D ++D VLFV K + + TG+AF + +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTAGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESD 440
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV--SDVRGGSPHRSIP---------- 155
AL R+R+++G+RY+E+FRS E + + + + G H P
Sbjct: 441 ASKALCRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 500
Query: 156 --------RAKSHDEGKD----------------------SAVHTGILRLRGLPFSAGKD 185
+ SH G S +RLRGLP+ A +
Sbjct: 501 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 560
Query: 186 DIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS- 238
I+ F DF + +H+ +N+ G+P+GEAF++ + E+S A+ R M G
Sbjct: 561 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCAQRRHNHYMMFGKK 619
Query: 239 -RYIELFPSSHEEMDEALSRG 258
RYIE+F S ++M+ L+ G
Sbjct: 620 YRYIEVFQCSGDDMNMVLNGG 640
>gi|431900090|gb|ELK08023.1| G-rich sequence factor 1 [Pteropus alecto]
Length = 380
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 103/217 (47%), Gaps = 47/217 (21%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV + + TGEA+ P + AL ++
Sbjct: 146 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDFRGRRKTGEAYVQFEEPEMANQALLKH 205
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 206 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSPTAKYITEPEVVFEEHEVNEDIQPMT 265
Query: 151 ------HRSIPRAKSH------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
+P+ S D G S++H + +RGLPF A DI++FF
Sbjct: 266 AFESEKEIELPKEMSEKLPEAVDFGTTSSLH--FVHMRGLPFQANAQDIINFFAPL---- 319
Query: 199 DSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+ ITM +S G+ TGEA V F ED+ AAM KDR
Sbjct: 320 KPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDR 356
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 44/239 (18%)
Query: 36 SSSFMYNPPPAYGYVSQPPPFP-----------------VVRLRGLPFDCTEVDVAEFFH 78
++ F+ Y+ + PP P ++R +GLP+ CT DV FF
Sbjct: 7 TTQFLTLWESKTTYLEELPPLPEYELAPSKLGGEVDDVYLIRAQGLPWSCTVEDVLSFFS 66
Query: 79 GLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 133
I + ++++ K G+A + V AL+++R MG+RYVEV+
Sbjct: 67 DCRIHNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE----- 121
Query: 134 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193
I NE D K+ V+ G++RLRGLP+S + DI+DFF
Sbjct: 122 ----INNEDVDAL----------MKNLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAG 167
Query: 194 FVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ + I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 168 LNIVD--ITFVMDFRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 224
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 46 LIRAQGLPWSCTVEDVLSFFSDCRIHNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 105
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 106 EKHRMYMGQRYVEVYEINNEDVD 128
>gi|118362902|ref|XP_001014867.1| hypothetical protein TTHERM_00051700 [Tetrahymena thermophila]
gi|89296443|gb|EAR94431.1| hypothetical protein TTHERM_00051700 [Tetrahymena thermophila
SB210]
Length = 967
Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats.
Identities = 63/210 (30%), Positives = 120/210 (57%), Gaps = 10/210 (4%)
Query: 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFH-GLDIVDVLFVHKNN-KFTGEAFCVLGYPLQV 108
S+ + +RLRGLPF+ E ++ +F L+ + F H N+ +F+GE Q+
Sbjct: 351 SRSDSYHYLRLRGLPFNAREAEIQQFLGISLEQDQITFKHDNDGRFSGECVIRTKDQNQL 410
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
D ++ +NMG+RY+EVF +++ ++ +A +++ D + + ++ + + + +
Sbjct: 411 DKIKDKHMRNMGKRYIEVFVAEQSDFVRAQDSQIID------DQKVGISQINSQIDPNLL 464
Query: 169 HTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ I+++RGLP++A DI FFKD + ++ I + RP+GEAF+ FA +D++
Sbjct: 465 QSANIVKIRGLPYNATDQDIQKFFKDSQIVQNGIQKVYDGK-RPSGEAFIIFATKQDAQK 523
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ KD+ +GSRYIE+F S +E + +
Sbjct: 524 AIEKDKEKMGSRYIEIFLSHLKEFTNHIKK 553
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
+V++RGLP++ T+ D+ +FF IV + V+ + +GEAF + A++++
Sbjct: 469 IVKIRGLPYNATDQDIQKFFKDSQIVQNGIQKVYDGKRPSGEAFIIFATKQDAQKAIEKD 528
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS 143
++ MG RY+E+F S +E+ I S
Sbjct: 529 KEKMGSRYIEIFLSHLKEFTNHIKKRKS 556
Score = 46.2 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFH-GLDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNR 116
++LRG+P++ E +V +F LD ++F + KN KFTGE F Q D ++
Sbjct: 167 LKLRGIPYNAKESEVQDFLGLTLDKYQMVFKYDKNEKFTGECFIKAKDQDQFDKIKSMHK 226
Query: 117 QNMGRRYVEVFRSKRQEYYKA 137
+ M RY+E+F + + E+ +A
Sbjct: 227 KTMKNRYIEIFVADKIEFVQA 247
Score = 40.4 bits (93), Expect = 0.80, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 125 EVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG---ILRLRGLPFS 181
E+ + K Q +++E S+ R + I + + + K ++ G L+LRG+P++
Sbjct: 121 EILKLKNQNLTSKMSSESSNQR-----QIIDKEELWSDPKGLLINGGSHYFLKLRGIPYN 175
Query: 182 AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 241
A + ++ DF L + + + + + TGE F++ + + + + T+ +RYI
Sbjct: 176 AKESEVQDFL-GLTLDKYQMVFKYDKNEKFTGECFIKAKDQDQFDKIKSMHKKTMKNRYI 234
Query: 242 ELFPSSHEEMDEA 254
E+F + E +A
Sbjct: 235 EIFVADKIEFVQA 247
>gi|341902820|gb|EGT58755.1| CBN-SYM-2 protein [Caenorhabditis brenneri]
Length = 761
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 108/240 (45%), Gaps = 41/240 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V R RGLP+ ++ VA+FF GLDIV L + + GE D AL+R
Sbjct: 208 VCRARGLPWQASDQHVAQFFAGLDIVPGGIALCLSSEGRRNGEVLVQFASQESRDLALKR 267
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH---------RSIP---------- 155
+R + RY+EV+++ E+ +R P SIP
Sbjct: 268 HRNFLLSRYIEVYKAGLDEFMHVATGHPEHIRSFLPRFWLISPPSAPSIPGVSRSPCRFL 327
Query: 156 ------------------RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 197
S + + + + I+R+RGLP+ + I FF+ L+
Sbjct: 328 TNFSLFLSFPAFPNPYFFSGSSTEAMEFVSANAVIVRMRGLPYDCSDNQIRAFFEPLKLT 387
Query: 198 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
E + IT +DGRPTG+AFV+F ED++ + K R +G RYIELF S+ E+ + + R
Sbjct: 388 EKILFIT-RTDGRPTGDAFVQFETEEDAQKGLLKHRHIIGQRYIELFKSTAAEVQQVVKR 446
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 12/128 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRN 115
+VR+RGLP+DC++ + FF L + + +LF+ + + + TG+AF L ++
Sbjct: 362 IVRMRGLPYDCSDNQIRAFFEPLKLTEKILFITRTDGRPTGDAFVQFETEEDAQKGLLKH 421
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRA-KSHDEGKDSAVHTGILR 174
R +G+RY+E+F+S E + + ++ +P ++ A ++ DE K V R
Sbjct: 422 RHIIGQRYIELFKSTAAEVQQVVKR--CNLINSNP--AVANAIETPDEKKKDCV-----R 472
Query: 175 LRGLPFSA 182
LRGLP+ A
Sbjct: 473 LRGLPYEA 480
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
P + HD G D + R RGLP+ A + FF + I + ++S+GR GE
Sbjct: 193 PILEDHDVGVDG--DNVVCRARGLPWQASDQHVAQFFAGLDIVPGGIALCLSSEGRRNGE 250
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
V+FA+ E A+ + R L SRYIE++ + +E
Sbjct: 251 VLVQFASQESRDLALKRHRNFLLSRYIEVYKAGLDE 286
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 201 IHITMNSDGRPTGEAFVEFANAE---DSKAAMAKDRMTLG--SRYIELFPSSHEEMD 252
+H+ N+ G P+GEAF++ + + + A + + M +G RYIE+F S+ EE++
Sbjct: 569 VHMVYNNQGHPSGEAFIQMISEQAAAATAAGVHNNFMCVGKKKRYIEVFQSTAEELN 625
>gi|148237217|ref|NP_001085008.1| heterogeneous nuclear ribonucleoprotein H1 (H) [Xenopus laevis]
gi|47507485|gb|AAH70969.1| MGC78776 protein [Xenopus laevis]
Length = 441
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 26/200 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFA 111
VV++RGLP+ C+ ++ FF +GL V ++ + + +GEAF + A
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSESKIANGLSGVHFIYT-REGRPSGEAFVEFETEDDLQLA 69
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++++R M RYVEVF+S E + + + S D D G
Sbjct: 70 VKKDRATMAHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----G 110
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 111 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKK 170
Query: 232 DRMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 171 HKERIGHRYIEIFKSSRAEV 190
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 111/243 (45%), Gaps = 57/243 (23%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCV-------------- 101
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF
Sbjct: 112 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171
Query: 102 ---LGY------------------PLQVDFALQR----NRQNMGRRYVEV---FRSKRQE 133
+G+ P + F +QR +R GR Y + F R+
Sbjct: 172 KERIGHRYIEIFKSSRAEVRTNYDPPRKLFGMQRPGPYDRPGAGRGYNNLGRGFDRMRRG 231
Query: 134 YYKAIANEVSDVRG------GSPHRSIPRAKSHDEGKDSAVH--TG-ILRLRGLPFSAGK 184
Y + D G G+ R R + G S TG + +RGLP+ A +
Sbjct: 232 AYGGGYSGYEDYNGYNEYAFGADQR-FGRVSDNRYGDGSTFQSTTGHCVHMRGLPYRATE 290
Query: 185 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
DI FF L+ +HI + +DGR TGEA VEFA+ ED+ AAM+KD+ + RY+ELF
Sbjct: 291 TDIYTFFSP--LNPVRVHIEIGADGRVTGEADVEFASHEDAVAAMSKDKANMQHRYVELF 348
Query: 245 PSS 247
+S
Sbjct: 349 LNS 351
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D+I +FF + ++ +H +GRP+GEAFVEF +D + A+
Sbjct: 11 VVKVRGLPWSCSHDEIENFFSESKIANGLSGVHFIYTREGRPSGEAFVEFETEDDLQLAV 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+ RY+E+F S+ EMD L
Sbjct: 71 KKDRATMAHRYVEVFKSNSVEMDWVL 96
>gi|390361167|ref|XP_003729861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 1
[Strongylocentrotus purpuratus]
Length = 455
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 30/206 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV----DVLFV-HKNNKFTGEAFCVLGYPLQVDF-- 110
V+R RGLP+ T +V +FF +I+ + F+ + + + +GE C + + + DF
Sbjct: 9 VIRARGLPWSTTAEEVMDFFEDCNILGAPDSIKFIFNSSGRPSGE--CFVEFDSEGDFQQ 66
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
A+++++ + +RY+E+F+SKR E GG
Sbjct: 67 AMKKDKNYLQKRYIELFKSKRSEMEWVTNRNSGGADGGE--------------------- 105
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G+++LRGLPFS K++I +FF + + I + ++DGR TGEAFV FA+ E ++ A+
Sbjct: 106 GLVKLRGLPFSCSKEEIAEFFSGLTIQANGITLPSDNDGRRTGEAFVLFASKEIAEKALK 165
Query: 231 KDRMTLGSRYIELFPSSHEEMDEALS 256
K + +G RYIE+F S +E+ A +
Sbjct: 166 KHKSHMGHRYIEVFKSFPDELRRATN 191
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLPFS + DI +FF + + +N G+ G A V+F +++KAAM KD
Sbjct: 327 VHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDIN--GKRNGFAAVDFRTHDEAKAAMKKD 384
Query: 233 RMTLGSRYIELFPSSHEE 250
+ +GSRYIELF S EE
Sbjct: 385 KNNIGSRYIELFLHSSEE 402
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+ EFFHG + +H N K G A + A+++++
Sbjct: 327 VHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDINGKRNGFAAVDFRTHDEAKAAMKKDKN 386
Query: 118 NMGRRYVEVFRSKRQE 133
N+G RY+E+F +E
Sbjct: 387 NIGSRYIELFLHSSEE 402
>gi|334312966|ref|XP_003339804.1| PREDICTED: LOW QUALITY PROTEIN: epithelial splicing regulatory
protein 2-like [Monodelphis domestica]
Length = 1253
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 23/207 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
VVR RGLP+ ++ D+A FF GL+I + + TGEA Q D +L+
Sbjct: 779 VVRARGLPWQSSDQDIARFFKGLNIAKGGRGPCAXNAQGRRTGEALVRFVDSEQRDLSLE 838
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
R++ +MG RY+EV+++ +E+ K + GG+ H D+ I+
Sbjct: 839 RHKHHMGARYIEVYKASGEEFLK--------IAGGTSHEVAQFLSREDQV--------II 882
Query: 174 RLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
R+RGLPF+A D++ F + + DGRPTG+AF FA E ++ A+
Sbjct: 883 RMRGLPFTATPGDVLAFLGPECPVTGGPEGLLFVHYPDGRPTGDAFALFACEELAQGALR 942
Query: 231 KDRMTLGSRYIELFPSSHEEMDEALSR 257
K + LG RYIEL + + + L+R
Sbjct: 943 KHKGILGKRYIELSGAPPSGVSQVLNR 969
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 11/211 (5%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVH-KNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T DV F V +LFVH + + TG+AF + A
Sbjct: 881 IIRMRGLPFTATPGDVLAFLGPECPVTGGPEGLLFVHYPDGRPTGDAFALFACEELAQGA 940
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIPRAKSHDEGKDSAVHT 170
L++++ +G+RY+E+ + + + +S + P IP + + V
Sbjct: 941 LRKHKGILGKRYIELSGAPPSGVSQVLNRYMSSPLIPTLPAPLIPVLPAPFPLAGAGVRD 1000
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KA 227
+RLRGLP++A DDI+ F + + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 1001 -CVRLRGLPYTASIDDILGFLGEAAGDIRPHGVHMVLNQQGRPSGDAFIQMKSADRALVA 1059
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
A + + RY+E+FP S EEM L G
Sbjct: 1060 AQRCHKKMMKERYVEVFPCSGEEMSLVLMGG 1090
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 36/161 (22%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPS------SSFMYNPP----PAYGYV 50
+F + A+GA + G +R I+ G PPS + +M +P PA
Sbjct: 930 LFACEELAQGALRKHKGILGKRYIE----LSGAPPSGVSQVLNRYMSSPLIPTLPAPLIP 985
Query: 51 SQPPPFPV--------VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNK 93
P PFP+ VRLRGLP+ + D+ F HG+ +V +++ +
Sbjct: 986 VLPAPFPLAGAGVRDCVRLRGLPYTASIDDILGFLGEAAGDIRPHGVHMV----LNQQGR 1041
Query: 94 FTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQE 133
+G+AF + + A QR +++ M RYVEVF +E
Sbjct: 1042 PSGDAFIQMKSADRALVAAQRCHKKMMKERYVEVFPCSGEE 1082
>gi|158301007|ref|XP_320791.4| AGAP011722-PA [Anopheles gambiae str. PEST]
gi|157013433|gb|EAA00060.4| AGAP011722-PA [Anopheles gambiae str. PEST]
Length = 861
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 25/208 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 206 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMALKR 265
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ V GG A + + S I+R
Sbjct: 266 HKHHIGNRYIEVYRANGEDFLA--------VAGG--------ASNEAQAFLSKGAQVIIR 309
Query: 175 LRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ ++DFF + + D I DGR TG+AFV F D+ A
Sbjct: 310 MRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQDSDASKA 369
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALS 256
++K R ++G RYIELF S+ E+ + +
Sbjct: 370 LSKHRESIGQRYIELFRSTTAEVQQVCT 397
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 116/257 (45%), Gaps = 56/257 (21%)
Query: 58 VVRLRGLPFDCTEVDVAEFF----HGLDIVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP+DCT V +FF + +++D +LFV K + + TG+AF +
Sbjct: 307 IIRMRGLPYDCTAKQVLDFFANGENSCNVLDGADGILFVKKPDGRATGDAFVLFEQDSDA 366
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPR------------ 156
AL ++R+++G+RY+E+FRS E + + VS R + ++ P
Sbjct: 367 SKALSKHRESIGQRYIELFRSTTAEVQQVCTSLVSVCRVFAQQKNSPTNRLTLLINVVKH 426
Query: 157 ----------AKSHDEGK------------------DSAVHTGILRLRGLPFSAGKDDIM 188
K+++ + S V +RLRGLP+ A + I+
Sbjct: 427 PPQVLNRSMDPKTYEPPQPPLIAQLPQMQLLPQHVITSGVEKNCIRLRGLPYEAKVEHIL 486
Query: 189 DFFKDFV--LSEDSIHITMNSDGRPTGEAFVEF---ANAEDSKAAMAKDRMTLG--SRYI 241
F DF + +H+ N+ G+ GEAF++ A S M G RYI
Sbjct: 487 HFLDDFANHIIYQGVHLVYNAQGQFNGEAFIQMDSETAAYQSAQQKHHKNMMFGKKQRYI 546
Query: 242 ELFPSSHEEMDEALSRG 258
E+F S E+M+ L+ G
Sbjct: 547 EVFQCSGEDMNMVLNGG 563
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T I+R RGLP+ + DI FF+ +++ + + ++ GR GEA V F + E A+
Sbjct: 204 TCIVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPQGRRNGEALVRFVSQEHRDMAL 263
Query: 230 AKDRMTLGSRYIELFPSSHEE 250
+ + +G+RYIE++ ++ E+
Sbjct: 264 KRHKHHIGNRYIEVYRANGED 284
>gi|170592721|ref|XP_001901113.1| Heterogeneous nuclear ribonucleoprotein H' [Brugia malayi]
gi|158591180|gb|EDP29793.1| Heterogeneous nuclear ribonucleoprotein H', putative [Brugia
malayi]
Length = 385
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 17/205 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--HGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V++ RGLP+ CTE D+ EFF I + L ++ + +GE F V DFAL +
Sbjct: 7 VMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGFVVFSSREDYDFALTK 66
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+++ +G+RYVE+ + E + SD R G S + A T I+R
Sbjct: 67 DKKYIGKRYVELQQVSSME----SDYDDSDRRYGG---------SLADPNLPARETSIVR 113
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDR 233
L GLP+ K++I+ FF+ +++ I +T + G+P GEAFV F + E + A+AK++
Sbjct: 114 LAGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFIDDESASKALAKNK 173
Query: 234 MTLGSRYIELFPSSHEEMDEALSRG 258
+ RY++++PSS+ EM AL G
Sbjct: 174 EYIQHRYVDIYPSSYGEMLRALDGG 198
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+R+RGLP+ A + DI+DFF+ + + +D RP+GEA VEF N D AAM +
Sbjct: 311 CIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTD-RPSGEAIVEFRNRADFDAAMQR 369
Query: 232 DRMTLGSRYIELFP 245
+R +GSRY+EL P
Sbjct: 370 NRNYMGSRYVELIP 383
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 34 PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLD--IVDVLFVHKN 91
PP PP Y + PPP +R+RGLP+ TE D+ +FF L +DVL+ +
Sbjct: 288 PPMGGHRGYSPPRRRYTT-PPPEYCIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGT 346
Query: 92 NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
++ +GEA D A+QRNR MG RYVE+
Sbjct: 347 DRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 382
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTG----EAFCVLGYPLQVDFALQ 113
+VRL GLP+ CT+ ++ FF L+I D V ++++G EAF AL
Sbjct: 111 IVRLAGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFIDDESASKALA 170
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 148
+N++ + RYV+++ S E +A+ + GG
Sbjct: 171 KNKEYIQHRYVDIYPSSYGEMLRALDGGLDPYGGG 205
>gi|307203918|gb|EFN82825.1| Heterogeneous nuclear ribonucleoprotein H2 [Harpegnathos saltator]
Length = 388
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
+RGLP+ T ++ +FF I + + + + + +GEA+ + P ++ A +R+
Sbjct: 1 MRGLPWSTTVDEIIKFFADCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKACKRD 60
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
R +MG RY+EVF++KR E + ++ ++A+ G +RL
Sbjct: 61 RDHMGHRYIEVFKAKRGEMEWVVKRSGLNL-------------------ENAMDDGCVRL 101
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 235
RGLPF K++I FF + + I + + GR TGEA+V+F N + ++ A+ K +
Sbjct: 102 RGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKHKEK 161
Query: 236 LGSRYIELFPSSHEEMDEAL 255
+G RYIE+F SS E+ ++
Sbjct: 162 IGHRYIEIFRSSLSEVRASI 181
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 175 LRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RGLP+S D+I+ FF D +S ++ +H+TM+ +GRP+GEA+VE ED + A +D
Sbjct: 1 MRGLPWSTTVDEIIKFFADCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKACKRD 60
Query: 233 RMTLGSRYIELFPSSHEEMDEALSR 257
R +G RYIE+F + EM+ + R
Sbjct: 61 RDHMGHRYIEVFKAKRGEMEWVVKR 85
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
R G +S VH+ + +RGLPF A + DI DFF+ + ++ I + + GRP+GEA
Sbjct: 256 RGSGDSWGGNSGVHS--IHMRGLPFKATEQDIADFFRP--IEPVNVRIILENGGRPSGEA 311
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELF 244
VEFA E++ AM KD+ + RYIELF
Sbjct: 312 DVEFATHEEAVKAMCKDKSHMLHRYIELF 340
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++A+FF GL+I+ L + TGEA+ + ALQ+
Sbjct: 98 CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQK 157
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 148
+++ +G RY+E+FRS E +I +RGG
Sbjct: 158 HKEKIGHRYIEIFRSSLSEVRASIG---PKMRGG 188
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLPF TE D+A+FF ++ V+V + +N + +GEA + A+ +++
Sbjct: 271 IHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEFATHEEAVKAMCKDKS 330
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 331 HMLHRYIELF 340
>gi|390361165|ref|XP_793087.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like isoform 2
[Strongylocentrotus purpuratus]
Length = 492
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 30/206 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV----DVLFV-HKNNKFTGEAFCVLGYPLQVDF-- 110
V+R RGLP+ T +V +FF +I+ + F+ + + + +GE C + + + DF
Sbjct: 9 VIRARGLPWSTTAEEVMDFFEDCNILGAPDSIKFIFNSSGRPSGE--CFVEFDSEGDFQQ 66
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
A+++++ + +RY+E+F+SKR E GG
Sbjct: 67 AMKKDKNYLQKRYIELFKSKRSEMEWVTNRNSGGADGGE--------------------- 105
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G+++LRGLPFS K++I +FF + + I + ++DGR TGEAFV FA+ E ++ A+
Sbjct: 106 GLVKLRGLPFSCSKEEIAEFFSGLTIQANGITLPSDNDGRRTGEAFVLFASKEIAEKALK 165
Query: 231 KDRMTLGSRYIELFPSSHEEMDEALS 256
K + +G RYIE+F S +E+ A +
Sbjct: 166 KHKSHMGHRYIEVFKSFPDELRRATN 191
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLPFS + DI +FF + + +N G+ G A V+F +++KAAM KD
Sbjct: 327 VHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDIN--GKRNGFAAVDFRTHDEAKAAMKKD 384
Query: 233 RMTLGSRYIELF 244
+ +GSRYIELF
Sbjct: 385 KNNIGSRYIELF 396
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+ EFFHG + +H N K G A + A+++++
Sbjct: 327 VHMRGLPFSVTEQDIKEFFHGSATPSNVVIHDINGKRNGFAAVDFRTHDEAKAAMKKDKN 386
Query: 118 NMGRRYVEVF 127
N+G RY+E+F
Sbjct: 387 NIGSRYIELF 396
>gi|198461689|ref|XP_001362087.2| GA20896 [Drosophila pseudoobscura pseudoobscura]
gi|198137420|gb|EAL26667.2| GA20896 [Drosophila pseudoobscura pseudoobscura]
Length = 910
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 25/209 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 299 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 358
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ + GG A + + S I+R
Sbjct: 359 HKHHIGARYIEVYRASGEDFLA--------IAGG--------ASNEAQAFLSKGAQVIIR 402
Query: 175 LRGLPFSAGKDDIMDFFKD-----FVL-SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ +++FF VL + + + DGR TG+AFV FAN D+ A
Sbjct: 403 MRGLPYDCTAKQVLEFFTTGEAPCHVLDANEGVLFVKKPDGRATGDAFVLFANEGDAPKA 462
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 463 LGRHRESIGQRYIELFRSTTAEVQQVLNR 491
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 121/256 (47%), Gaps = 57/256 (22%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP+DCT V EFF H LD + VLFV K + + TG+AF +
Sbjct: 400 IIRMRGLPYDCTAKQVLEFFTTGEAPCHVLDANEGVLFVKKPDGRATGDAFVLFANEGDA 459
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG--GSPHRSIPRAK-------- 158
AL R+R+++G+RY+E+FRS E + + N D + S H P
Sbjct: 460 PKALGRHRESIGQRYIELFRSTTAEVQQVL-NRSMDPKTFETSSHSQPPLIAQLPTMQLP 518
Query: 159 --------SHDEGK--------------------DSAVHTGILRLRGLPFSAGKDDIMDF 190
+H G+ S +RLRGLP+ A + I+ F
Sbjct: 519 LLPQVGVVTHGNGRVPVPVPANLCPHPHPPQHLITSGTTKNCIRLRGLPYEAMVEHILHF 578
Query: 191 FKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS--RYIE 242
DF + +H+ +N+ G+P+GEAF++ ++EDS A+ + M G RYIE
Sbjct: 579 LDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DSEDSARLCAQRKHNQFMVFGKKFRYIE 637
Query: 243 LFPSSHEEMDEALSRG 258
+F S ++M+ L+ G
Sbjct: 638 VFQCSGDDMNMVLNGG 653
>gi|344244475|gb|EGW00579.1| G-rich sequence factor 1 [Cricetulus griseus]
Length = 621
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 101/215 (46%), Gaps = 43/215 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P + AL ++
Sbjct: 297 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKH 356
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP------------------------- 150
R+ +G RY+E+F S+R E + + + SP
Sbjct: 357 REEIGNRYIEIFPSRRNEVRTHVGSHKAKKMVSSPTAKYITEPEVVFEEHEVNEDIRPMT 416
Query: 151 ----HRSIPRAKSHDEGKDSAVHTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDS 200
+ I K E V G + +RGLPF A DI++FF
Sbjct: 417 AFESDKEIELPKEMSEKLPETVDFGSMPSLHFVHMRGLPFQANAQDIINFFAPL----KP 472
Query: 201 IHITM--NSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+ ITM +S G+ TGEA V F ED+ AAM KDR
Sbjct: 473 VRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDR 507
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 88/168 (52%), Gaps = 24/168 (14%)
Query: 86 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 145
++++ K G+A + V AL+++R MG+RYVEV+ I NE D
Sbjct: 230 FLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------INNEDVDA 280
Query: 146 RGGSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
S H +S P V+ G++RLRGLP+S + DI+DFF + + I
Sbjct: 281 LMKSLHVKSSP-----------MVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFV 327
Query: 205 MNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 328 MDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 375
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 197 SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 252
SE+ IH +N DG+ G+A +E + +D + A+ K RM +G RY+E++ ++E++D
Sbjct: 224 SENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVD 279
>gi|194756410|ref|XP_001960472.1| GF13378 [Drosophila ananassae]
gi|190621770|gb|EDV37294.1| GF13378 [Drosophila ananassae]
Length = 885
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 36/233 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+DCT V +FF H LD + VLFV K + + TG+AF + +
Sbjct: 384 IIRMRGLPYDCTAKQVLDFFTTGDTAPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESD 443
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR----GGS----------PHRS 153
AL R+R+++G+RY+E+FRS E + + N D + GG+ P
Sbjct: 444 AAKALGRHRESIGQRYIELFRSTTAEVQQVL-NRSMDPKNYESGGNHSQPPLIAQLPTMQ 502
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRP 211
+P H S +RLRGLP+ A + I+ F F + +H+ +N+ G+P
Sbjct: 503 LPLLPQHL--ITSGTTRNCIRLRGLPYEAMVEHILHFLDGFAKHIIYQGVHMVINAQGQP 560
Query: 212 TGEAFVEFANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 258
+GEAF++ ++EDS A+ + M G RYIE+F S ++M+ L+ G
Sbjct: 561 SGEAFIQM-DSEDSARLCAQRKHNQFMVFGKKFRYIEVFQCSGDDMNMVLNGG 612
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 107/210 (50%), Gaps = 26/210 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 283 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFISQEHRDMALKR 342
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ + GG A + + S I+R
Sbjct: 343 HKHHIGTRYIEVYRASGEDFLA--------IAGG--------ASNEAQAFLSKGAQVIIR 386
Query: 175 LRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+RGLP+ ++DFF VL + + DGR TG+AFV FA+ D+
Sbjct: 387 MRGLPYDCTAKQVLDFFTTGDTAPCHVLDGNEGVLFVKKPDGRATGDAFVLFAHESDAAK 446
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 447 ALGRHRESIGQRYIELFRSTTAEVQQVLNR 476
>gi|156550801|ref|XP_001600558.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Nasonia
vitripennis]
Length = 563
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 105/203 (51%), Gaps = 24/203 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ T ++ +FF I + + + + +GEA+ + ++ A
Sbjct: 14 VVKVRGLPWSTTVDEIMKFFGDCSITHGKAGIHMTMSREGRPSGEAYIEMDSEEDIEKAC 73
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+R+R +MG RY+EVF++KR E I ++ ++ + G
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVIKRSCLNL-------------------ENVMDDGC 114
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I FF + + I + + GR TGEA+V+F N + ++ A+ K
Sbjct: 115 VRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKH 174
Query: 233 RMTLGSRYIELFPSSHEEMDEAL 255
+ +G RYIE+F SS E+ ++
Sbjct: 175 KEKIGHRYIEIFRSSLSEVRASI 197
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 159 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAF 216
++DEG D ++++RGLP+S D+IM FF D ++ + IH+TM+ +GRP+GEA+
Sbjct: 2 ANDEG-DHNEEGFVVKVRGLPWSTTVDEIMKFFGDCSITHGKAGIHMTMSREGRPSGEAY 60
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+E + ED + A +DR +G RYIE+F + EM+ + R
Sbjct: 61 IEMDSEEDIEKACKRDRDHMGHRYIEVFKAKRGEMEWVIKR 101
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLPF A + DI DFF+ LS SI I + + GR +GEA VEFA+ E++ AM+K
Sbjct: 297 CVHMRGLPFRATEQDIADFFRP--LSPISIRIILENGGRASGEADVEFASHEEAVKAMSK 354
Query: 232 DRMTLGSRYIELFPSSH 248
D+ + RYIELF +S
Sbjct: 355 DKSHMSHRYIELFLNSQ 371
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++A+FF GL+I+ L + TGEA+ + ALQ+
Sbjct: 114 CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQK 173
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIA 139
+++ +G RY+E+FRS E +I
Sbjct: 174 HKEKIGHRYIEIFRSSLSEVRASIG 198
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLPF TE D+A+FF L + + + +N + +GEA + A+ +++
Sbjct: 297 CVHMRGLPFRATEQDIADFFRPLSPISIRIILENGGRASGEADVEFASHEEAVKAMSKDK 356
Query: 117 QNMGRRYVEVF 127
+M RY+E+F
Sbjct: 357 SHMSHRYIELF 367
>gi|313233607|emb|CBY09778.1| unnamed protein product [Oikopleura dioica]
Length = 425
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 106/195 (54%), Gaps = 8/195 (4%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDF 110
P VV+LRG+P+ CT + +F LDI V+ + TGEAF L +
Sbjct: 117 PWENVVKLRGVPYKCTSDRIRQFLRELDIPAHGVVMVTDARGRNTGEAFVQLKSHEHAEQ 176
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
AL ++++ + RRY+EVF++ R E +A + + + G + S + G D V+
Sbjct: 177 ALLKHKECIDRRYIEVFKATRAEMSQA-SQSLHNHCNGDHYYSQQNSSLKGVGLD-GVYR 234
Query: 171 GILRLRGLPFSAGKDDIMDFFK-DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RG+PF A ++ + FF DF +S ++ + +D RPTG A V F ED++ AM
Sbjct: 235 HVVQMRGIPFRATEEQVRSFFGLDFEIS--AVQFEIGADHRPTGRASVAFPTHEDAEKAM 292
Query: 230 AKDRMTLGSRYIELF 244
KD+ +G RYIEL
Sbjct: 293 KKDKECMGKRYIELM 307
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 30/205 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLF----VH----KNNKFTGEAFCVLGYPLQVD 109
V+RLRGLP+ C +V EFF DIVD++ VH K + GEA+ L V+
Sbjct: 21 VIRLRGLPYSCCGAEVVEFF--ADIVDIVNGEAGVHFTLTKEGRPNGEAYIELETDADVE 78
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
A+ ++R + RY+E+F++ +E + E ++ + P ++
Sbjct: 79 KAMIKDRTQLQDRYIEIFKATTEEMDYVL--EKTERQANQPWENV--------------- 121
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++LRG+P+ D I F ++ + + + ++ GR TGEAFV+ + E ++ A+
Sbjct: 122 ---VKLRGVPYKCTSDRIRQFLRELDIPAHGVVMVTDARGRNTGEAFVQLKSHEHAEQAL 178
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEA 254
K + + RYIE+F ++ EM +A
Sbjct: 179 LKHKECIDRRYIEVFKATRAEMSQA 203
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV---LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
++RLRGLP+S ++++FF D V E +H T+ +GRP GEA++E D + A
Sbjct: 21 VIRLRGLPYSCCGAEVVEFFADIVDIVNGEAGVHFTLTKEGRPNGEAYIELETDADVEKA 80
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
M KDR L RYIE+F ++ EEMD L +
Sbjct: 81 MIKDRTQLQDRYIEIFKATTEEMDYVLEK 109
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 36/199 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLD--IVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQR 114
VV++RG+PF TE V FF GLD I V F + +++ TG A + A+++
Sbjct: 236 VVQMRGIPFRATEEQVRSFF-GLDFEISAVQFEIGADHRPTGRASVAFPTHEDAEKAMKK 294
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+++ MG+RY+E+ ++++ + + G P + + ++
Sbjct: 295 DKECMGKRYIELM---------ILSSQNTPIDGIGP---------------NGEYLFMIH 330
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+RGLPF DI+ FF + + IH+ M G PTG V F +A++ A+ +D+
Sbjct: 331 MRGLPFRVHARDIVSFFDPIPILD--IHLEMGPKG-PTGAGQVAFFSAQERSDALKRDKE 387
Query: 235 TLGSRYIELF-----PSSH 248
+G RYIELF PS+H
Sbjct: 388 NIGDRYIELFAIKPLPSAH 406
>gi|449486103|ref|XP_004175453.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12 [Taeniopygia
guttata]
Length = 1411
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 112/226 (49%), Gaps = 24/226 (10%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF TE DV +FF GL D V +L V +NN G
Sbjct: 296 PIPINPDDLYVSVHGMPFTATESDVKDFFLGLRVDAVHMLKDHVGRNN---GNGLVKFFS 352
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN-EVSDVRGGS-----PHRSIPRAK 158
P AL+RNR M +RYVEV + +++ A + G S P ++ PR+K
Sbjct: 353 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQTMGPSGQAHPPSQAHPRSK 412
Query: 159 SHDEGKDSAV-----HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
S K S H + L+GLPF + ++DFFK + EDSI+I +G+ G
Sbjct: 413 SPTGQKRSRSRSPHEHGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIG 472
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
E FVEF N D KAA+ + +G+R+I++ P + + M E + R
Sbjct: 473 EGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITKKAMLEKIDMIR 518
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 8/198 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K GE F AL
Sbjct: 431 CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCH 490
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI-PRAKSHDEGKDSAVHTGIL 173
++Q +G R+++V + KA+ ++ +R + S R + +S +
Sbjct: 491 HKQYIGNRFIQVHPITK----KAMLEKIDMIRKRLQNFSYDQREILMNAEGESGLPKLCA 546
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+ +P++ K +I+ F + + E+S+ I ++++G+ G+A V+F +D+ A R
Sbjct: 547 HISNIPYNITKIEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAEDDAHKAERLHR 606
Query: 234 MTLGSRYIELFPSSHEEM 251
L R + L + EEM
Sbjct: 607 KKLNGRDVNLRLITVEEM 624
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 804 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVD 863
Query: 231 -KDRMTLGSRYIELFPSSHEEMDEALS 256
DR +GSR ++L + M+ +++
Sbjct: 864 LNDR-PIGSRKVKLMAACVSRMELSVA 889
>gi|196003222|ref|XP_002111478.1| hypothetical protein TRIADDRAFT_13868 [Trichoplax adhaerens]
gi|190585377|gb|EDV25445.1| hypothetical protein TRIADDRAFT_13868, partial [Trichoplax
adhaerens]
Length = 302
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 112/209 (53%), Gaps = 17/209 (8%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGL-DIVD-----VLFVHKNNKFTGEAFCVLGYPLQ 107
P ++R++GLP +DV FF G D++D +L + + + TGE + P
Sbjct: 100 PEIALLRIKGLPSTVIAIDVVNFFKGTADVLDNEEGVLLLLSADGRTTGEGYVAFKTPEI 159
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANEVSDVRGGSPHRSIPRAKSHDEGKD 165
A+ ++ + M ++E++ + KA+ ++ S R + R KS + +D
Sbjct: 160 ARSAIYKDYKIMANHHIELYDCSLNDALKALQESHISSSYRKNDKILTNLRQKSQESVRD 219
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAE 223
+RLRGLPF+A + DI +F + ++ + IH+ +N GRP+G+A+++ +AE
Sbjct: 220 C------IRLRGLPFTATEPDITNFMGELADKIALNGIHLCINDRGRPSGDAYIQMLSAE 273
Query: 224 DS-KAAMAKDRMTLGSRYIELFPSSHEEM 251
D+ K+A K R LG+R+IE+F S EE+
Sbjct: 274 DAIKSAEKKHREHLGTRWIEVFQCSREEV 302
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 106/203 (52%), Gaps = 19/203 (9%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V++ LP + DVA FF GL+I+ + + K G+A+ +Q D AL+R+
Sbjct: 1 VKVCDLPTYLNDQDVASFFRGLNIIRGGISFLLSEYGKRYGQAYVKFEDTVQRDLALKRH 60
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
Q + ++ + +++ + + + +V G + ++ ++ E +LR+
Sbjct: 61 SQYIDQKSIRIYKINAGQGF------IPNVGGATIVNALMKSNDRPE-------IALLRI 107
Query: 176 RGLPFSAGKDDIMDFFK---DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+GLP + D+++FFK D + +E+ + + +++DGR TGE +V F E +++A+ KD
Sbjct: 108 KGLPSTVIAIDVVNFFKGTADVLDNEEGVLLLLSADGRTTGEGYVAFKTPEIARSAIYKD 167
Query: 233 RMTLGSRYIELFPSSHEEMDEAL 255
+ + +IEL+ S + +AL
Sbjct: 168 YKIMANHHIELYDCSLNDALKAL 190
>gi|25153681|ref|NP_741422.1| Protein HRPF-2 [Caenorhabditis elegans]
gi|351059337|emb|CCD74180.1| Protein HRPF-2 [Caenorhabditis elegans]
Length = 610
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFA 111
+PP +RLRGLPF+ TE D+ EFF GL I V FV + GEA+ + A
Sbjct: 59 EPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTTGRPNGEAYVEFKNTEEAGKA 118
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++ +R+ + RY+EVF + E + D G H
Sbjct: 119 MENDRKEISNRYIEVFTVEADEAEFEFRPD-PDSNGEVNH-------------------- 157
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEFANAEDSKAAM 229
++RLRG+P+S +DD+ FF+ I I T RP+GEAFV F + ++ AM
Sbjct: 158 VIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTGGPRSRPSGEAFVRFTTQDAAEKAM 217
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ +GSRY+E+F SS E + A G
Sbjct: 218 DYNNRHMGSRYVEVFMSSMVEFNRAKGGG 246
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
Query: 158 KSHDEGKDSAVHTG------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 211
K DE + + +G +RLRGLPF+A + DI +FF + T GRP
Sbjct: 45 KEADESMPTKISSGEPPRSQYIRLRGLPFNATEKDIHEFFAGLTIERVKFVCTT---GRP 101
Query: 212 TGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
GEA+VEF N E++ AM DR + +RYIE+F E DEA
Sbjct: 102 NGEAYVEFKNTEEAGKAMENDRKEISNRYIEVFTV---EADEA 141
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 160 HDEGKDSAVHTG---ILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
HD+G S G LR +RGLP+ A I FF L S+ I +N GRP+G+
Sbjct: 309 HDQGGRSDYGRGGDDPLRVYMRGLPYDADDHAIAAFFS--PLRCHSVKIGINETGRPSGD 366
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
A EF N D + A++++ +G RY+ELF
Sbjct: 367 AIAEFDNYNDLQVALSRNNQRMGRRYVELF 396
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLP+D + +A FF L V + +++ + +G+A + AL RN Q
Sbjct: 327 VYMRGLPYDADDHAIAAFFSPLRCHSVKIGINETGRPSGDAIAEFDNYNDLQVALSRNNQ 386
Query: 118 NMGRRYVEVFRSK 130
MGRRYVE+F ++
Sbjct: 387 RMGRRYVELFDNR 399
>gi|198454671|ref|XP_002137931.1| GA27490 [Drosophila pseudoobscura pseudoobscura]
gi|198132901|gb|EDY68489.1| GA27490 [Drosophila pseudoobscura pseudoobscura]
Length = 610
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 110/213 (51%), Gaps = 33/213 (15%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCVLG 103
V + P F +RLRGLP+ T ++ +F +++ + ++ + K TGEA+ +
Sbjct: 47 VGESPKF--IRLRGLPWSATHKEILDFLENVNVTNASQGIHLVTSRVDGKNTGEAYVEVA 104
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
V+ A + N+ +MG RY+EVF + +E +A+ R I G
Sbjct: 105 TQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------RKIG-------G 144
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFAN 221
+A +++LRGLP++ + I +FF + D I M+ GR TGEAFV+F +
Sbjct: 145 HGNAF---VVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGRATGEAFVQFES 201
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
ED++ A+ ++R +G RYIE+F SS EM A
Sbjct: 202 QEDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 234
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 491 GSDVEYYT--IHMRGLPYTSFENDVFKFFEP--VRPANVRINYNKKGLHSGTADAYFDTY 546
Query: 223 EDSKAAMAKDRMTLGSRYIELF 244
EDS+ AM + R +GSRYIELF
Sbjct: 547 EDSQIAMKRHREQMGSRYIELF 568
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ + +RGLP+ E DV +FF + +V + +K +G A A++R
Sbjct: 496 YYTIHMRGLPYTSFENDVFKFFEPVRPANVRINYNKKGLHSGTADAYFDTYEDSQIAMKR 555
Query: 115 NRQNMGRRYVEVF 127
+R+ MG RY+E+F
Sbjct: 556 HREQMGSRYIELF 568
>gi|313244027|emb|CBY14897.1| unnamed protein product [Oikopleura dioica]
Length = 376
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 38/229 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+V++RG+PF T+ D+ +FF G I V+ + +N GEA D AL+R
Sbjct: 118 IVKMRGMPFSATDHDIRDFFDGCSISPGGIVICLGQNGSANGEALVQFDDKESADQALER 177
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA------------IANEVSDVRGGSPHRS--------- 153
+++NMG+RY+EVF+S ++ A + + R G P S
Sbjct: 178 HKKNMGQRYIEVFKSSSRDLQLAQGRNGGAGGGGSGGGPMRNSRSGGPRASPYGGPPAGR 237
Query: 154 ------------IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 201
P A ++ + I+ +RGLP+ A + +I +FF ++ ++
Sbjct: 238 PAIGGYGGSSAGGPPADPGAGLDENGQYKHIVHMRGLPYRATEQEISEFF--LPVNTLAV 295
Query: 202 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
I N + RP GEA V F D++A+++KDR LGSRY+ELF S ++
Sbjct: 296 RIIFNRENRPAGEADVAFYTHADAQASLSKDRQNLGSRYVELFLRSTDD 344
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
P VRLRGLP+ T+ ++ EF + ++ + ++ + +GEA L + A
Sbjct: 16 PAFAVRLRGLPWSATKQEICEFLENRPDESSVIICLGRDGRPSGEALVGLYDSDSFELAK 75
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG- 171
++++N+GRRYVEV+ S EY + +D+G D++ +G
Sbjct: 76 SKHKENLGRRYVEVYESSTAEYMNC-------------------SYDNDDG-DASGFSGY 115
Query: 172 --ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I+++RG+PFSA DI DFF +S I I + +G GEA V+F + E + A+
Sbjct: 116 EFIVKMRGMPFSATDHDIRDFFDGCSISPGGIVICLGQNGSANGEALVQFDDKESADQAL 175
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEA 254
+ + +G RYIE+F SS ++ A
Sbjct: 176 ERHKKNMGQRYIEVFKSSSRDLQLA 200
>gi|198417021|ref|XP_002122500.1| PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein H2
(hnRNP H2) (Heterogeneous nuclear ribonucleoprotein H)
(hnRNP H) (FTP-3) [Ciona intestinalis]
Length = 420
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 26/203 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK----NNKFTGEAFCVLGYPLQVDFALQ 113
VVRLRGLP+ TE +V +F + + + + + + +GEAF + + +
Sbjct: 7 VVRLRGLPWAATEAEVIKFLNVEVVGGEAGIRRTYTDDQRPSGEAFVEVTSQKSLQTCFE 66
Query: 114 RNRQNMGRRYVEVFRS--KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
++ Q +G+RY+EVF S K EY + S +E SA
Sbjct: 67 KDHQLIGKRYIEVFESSVKEMEYVLGL--------------------SEEEIGSSAQADV 106
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RLRGLPF K+++ FF + + I + ++ +GR TGEA+VEF + E ++ A+ K
Sbjct: 107 FVRLRGLPFQCSKEEVAQFFSGLEIVPNGITLPLDDNGRSTGEAYVEFGSPESAEKALTK 166
Query: 232 DRMTLGSRYIELFPSSHEEMDEA 254
+ +G RYIE+F SS E+ E+
Sbjct: 167 HKEKIGHRYIEIFKSSKRELMES 189
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ +VA+FF GL+IV L + N + TGEA+ G P + AL ++
Sbjct: 108 VRLRGLPFQCSKEEVAQFFSGLEIVPNGITLPLDDNGRSTGEAYVEFGSPESAEKALTKH 167
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSPHRSIP 155
++ +G RY+E+F+S ++E ++ + D RG GS R P
Sbjct: 168 KEKIGHRYIEIFKSSKRELMESQGEYMDDERGFGSRGRPGP 208
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFK-DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++RLRGLP++A + +++ F + V E I T D RP+GEAFVE + + +
Sbjct: 7 VVRLRGLPWAATEAEVIKFLNVEVVGGEAGIRRTYTDDQRPSGEAFVEVTSQKSLQTCFE 66
Query: 231 KDRMTLGSRYIELFPSSHEEMDEAL 255
KD +G RYIE+F SS +EM+ L
Sbjct: 67 KDHQLIGKRYIEVFESSVKEMEYVL 91
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R+RGLPF + D+ +FF V ++I + DGR TGE V FA+ +D++AAM K
Sbjct: 318 VVRMRGLPFKCQEQDVFNFFSPLVPV--RVNIEYSDDGRVTGEGTVFFASYQDAQAAMQK 375
Query: 232 DRMTLGSRYIELFPSSH 248
++ + RYIELF S+
Sbjct: 376 NKECIQHRYIELFLRSN 392
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 39 FMYNPPPAYG---YVSQPPPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-K 93
+ YN YG Y + P VVR+RGLPF C E DV FF L V V + ++ +
Sbjct: 295 YGYNGDENYGEEFYEEEASPSQFVVRMRGLPFKCQEQDVFNFFSPLVPVRVNIEYSDDGR 354
Query: 94 FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF-RSKRQE 133
TGE A+Q+N++ + RY+E+F RS R++
Sbjct: 355 VTGEGTVFFASYQDAQAAMQKNKECIQHRYIELFLRSNRRD 395
>gi|240849679|gb|ACS54296.1| RE48185p [Drosophila melanogaster]
Length = 860
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 26/210 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGL + ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 280 IVRARGLLWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 383
Query: 175 LRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+RGLP+ A ++DFF VL + + DGR TG+AFV FAN D+
Sbjct: 384 MRGLPYDATAKQVLDFFTTGDAPPCHVLDGNEGVLFVEKPDGRATGDAFVLFANETDAPK 443
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 444 ALGRHRESIGQRYIELFRSTTAEVQQVLNR 473
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 36/233 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+D T V +FF H LD + VLFV K + + TG+AF +
Sbjct: 381 IIRMRGLPYDATAKQVLDFFTTGDAPPCHVLDGNEGVLFVEKPDGRATGDAFVLFANETD 440
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR----GGS----------PHRS 153
AL R+R+++G+RY+E+FRS E + + N D + GG P
Sbjct: 441 APKALGRHRESIGQRYIELFRSTTAEVQQVL-NRSMDPKNYESGGGHSQPPLIAQLPTMQ 499
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRP 211
+P H S +RLRGLP+ A + I+ F DF + +H+ +N+ G+P
Sbjct: 500 LPLLPQHL--ITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQP 557
Query: 212 TGEAFVEFANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 258
+GEAF++ + E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 558 SGEAFIQM-DLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 609
>gi|195037855|ref|XP_001990376.1| GH18272 [Drosophila grimshawi]
gi|193894572|gb|EDV93438.1| GH18272 [Drosophila grimshawi]
Length = 622
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 109/215 (50%), Gaps = 33/215 (15%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCV 101
G V + P F +RLRGLP+ T ++ +F +++++ ++ + K TGEA+
Sbjct: 54 GDVGESPKF--IRLRGLPWSATHKEILDFLVNVEVINGSQGIHLVTSRVDGKNTGEAYVE 111
Query: 102 LGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHD 161
+ V+ A + N+ +MG RY+EVF + +E A E GG H
Sbjct: 112 VASQEDVEEARKLNKVSMGHRYIEVFTATPKE-----AKEAMRKTGGHGH---------- 156
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEF 219
+++LRGLP++ + I +FF + D I M+ GR TGEAFV+F
Sbjct: 157 --------AFVVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGRATGEAFVQF 208
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
+ +D++ A+ ++R +G RYIE+F SS EM A
Sbjct: 209 ESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 243
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLP+++ ++D+ FF+ + ++ I N G +G A F EDS+ AM +
Sbjct: 521 IHMRGLPYNSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTYEDSQLAMKRH 578
Query: 233 RMTLGSRYIELF 244
R +GSRYIELF
Sbjct: 579 REQMGSRYIELF 590
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ + +RGLP++ E DV +FF + +V + +K +G A A++R
Sbjct: 518 YYTIHMRGLPYNSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQLAMKR 577
Query: 115 NRQNMGRRYVEVF 127
+R+ MG RY+E+F
Sbjct: 578 HREQMGSRYIELF 590
>gi|195171791|ref|XP_002026687.1| GL11864 [Drosophila persimilis]
gi|194111613|gb|EDW33656.1| GL11864 [Drosophila persimilis]
Length = 830
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 41/212 (19%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP+DCT V EFF H LD + VLFV K + + TG+AF +
Sbjct: 400 IIRMRGLPYDCTAKQVLEFFTTGEAPCHVLDASEGVLFVKKPDGRATGDAFVLFANEGDA 459
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL R+R+++G+RY+E+FRS E + + S
Sbjct: 460 PKALGRHRESIGQRYIELFRSTTAEVQQVL-----------------------HLITSGT 496
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+RLRGLP+ A + I+ F DF + +H+ +N+ G+P+GEAF++ ++EDS
Sbjct: 497 TKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DSEDSA 555
Query: 227 AAMAKDR----MTLGS--RYIELFPSSHEEMD 252
A+ + M G RYIE+F S ++M+
Sbjct: 556 RLCAQRKHNQFMVFGKKFRYIEVFQCSGDDMN 587
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 25/207 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 299 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 358
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 359 HKHHIGARYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 402
Query: 175 LRGLPFSAGKDDIMDFFKD-----FVL-SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ +++FF VL + + + DGR TG+AFV FAN D+ A
Sbjct: 403 MRGLPYDCTAKQVLEFFTTGEAPCHVLDASEGVLFVKKPDGRATGDAFVLFANEGDAPKA 462
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEAL 255
+ + R ++G RYIELF S+ E+ + L
Sbjct: 463 LGRHRESIGQRYIELFRSTTAEVQQVL 489
>gi|195056424|ref|XP_001995099.1| GH22967 [Drosophila grimshawi]
gi|193899305|gb|EDV98171.1| GH22967 [Drosophila grimshawi]
Length = 1007
Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats.
Identities = 69/212 (32%), Positives = 108/212 (50%), Gaps = 31/212 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 339
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 340 HKHHIGSRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 383
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHI---------TMNSDGRPTGEAFVEFANAEDS 225
+RGLP+ +++FF E H+ DGR TG+AFV FAN DS
Sbjct: 384 MRGLPYDCTPKQVLEFF---TTGESPCHVLDGNEGVLFVKKPDGRATGDAFVLFANECDS 440
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 441 SKALGRHRESIGQRYIELFRSTTAEVQQVLNR 472
Score = 92.8 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 73/258 (28%), Positives = 114/258 (44%), Gaps = 57/258 (22%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP+DCT V EFF H LD + VLFV K + + TG+AF +
Sbjct: 381 IIRMRGLPYDCTPKQVLEFFTTGESPCHVLDGNEGVLFVKKPDGRATGDAFVLFANECDS 440
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN---------------------------- 140
AL R+R+++G+RY+E+FRS E + +
Sbjct: 441 SKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKTYESNNHSQPPLIAQLPTMQLPL 500
Query: 141 --EVSDVRGGSPHRSIPRAKSH-----------DEGKDSAVHTGILRLRGLPFSAGKDDI 187
+V GG + SH S +RLRGLP+ A + I
Sbjct: 501 LPQVGAAAGGHALNPLSANASHANLCPQLPHAPQHLITSGTTKNCIRLRGLPYEAMVEHI 560
Query: 188 MDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR---MTLGS--RY 240
+ F DF + +H+ +N+ G+P+GEAF++ E ++ + M G RY
Sbjct: 561 LHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQMDLEESARLCAQRKHNQFMVFGKKFRY 620
Query: 241 IELFPSSHEEMDEALSRG 258
IE+F S ++M+ L+ G
Sbjct: 621 IEVFQCSGDDMNHVLNGG 638
>gi|449685013|ref|XP_002164898.2| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Hydra
magnipapillata]
Length = 365
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 54/239 (22%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VRLRGLPFDCT+ D+AEFF GLDI + ++++ + +G+A+ + AL +
Sbjct: 31 IVRLRGLPFDCTKHDIAEFFSGLDISPYGITITMNQDGRASGDAYVEFVTQQDAENALLK 90
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSD-------VRGGSPHR----SIPR------- 156
+++ +G RY+E+F+S + + + D +R G R + PR
Sbjct: 91 HKEKIGHRYIEIFQSSKDDIKYVVGTRSDDHRPSLMSIRPGPYDRPQNFNGPRRGRGGVQ 150
Query: 157 ----------AKSHDEGKDSAVH--------------------TG-ILRLRGLPFSAGKD 185
+ S D G++ +++ TG + +RGLPF A
Sbjct: 151 LGPSGFNTAPSYSGDFGRNRSMNRGGRSGGMGMSKTPTVQSSKTGHSVHMRGLPFEASVS 210
Query: 186 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
DI+ FF L+ + + +GRP GE V+FA D+++AM KD+ +G RYIELF
Sbjct: 211 DIVTFFSP--LNPVDVRLMFEPNGRPKGECDVDFATHSDAESAMLKDKQNMGHRYIELF 267
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 23/133 (17%)
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
MG+RY+EV +K+ E + + N + D++ I+RLRGL
Sbjct: 1 MGKRYIEVKEAKQSEM-EWVVNRM----------------------DNSRSEAIVRLRGL 37
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PF K DI +FF +S I ITMN DGR +G+A+VEF +D++ A+ K + +G
Sbjct: 38 PFDCTKHDIAEFFSGLDISPYGITITMNQDGRASGDAYVEFVTQQDAENALLKHKEKIGH 97
Query: 239 RYIELFPSSHEEM 251
RYIE+F SS +++
Sbjct: 98 RYIEIFQSSKDDI 110
>gi|268529124|ref|XP_002629688.1| C. briggsae CBR-SYM-2 protein [Caenorhabditis briggsae]
Length = 613
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 112/205 (54%), Gaps = 19/205 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNN-KFTGEAFCVLGYPLQVDFALQRN 115
+VR+RGLP+DCT+ + FF L + + +LF+ + + + TG AF L ++
Sbjct: 273 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGCAFVQFETEEDAQQGLLKH 332
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
RQ +G+RY+E+F+S E + + ++ +P + S ++ KD +RL
Sbjct: 333 RQVIGQRYIELFKSTAAEVQQVVKR--CNLINSAPVVANAVEVSDEKKKDC------VRL 384
Query: 176 RGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA--- 230
RGLP+ A I++F DF ++ +H+ N+ G P+GEAF++ +E + AA A
Sbjct: 385 RGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQMI-SEQAAAATASGV 443
Query: 231 -KDRMTLG--SRYIELFPSSHEEMD 252
+ M +G RYIE+F SS EE++
Sbjct: 444 HNNFMCVGKKKRYIEVFQSSAEELN 468
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+R+RGLP+ I FF+ L+E + IT +DGRPTG AFV+F ED++ + K
Sbjct: 273 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFIT-RTDGRPTGCAFVQFETEEDAQQGLLK 331
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
R +G RYIELF S+ E+ + + R
Sbjct: 332 HRQVIGQRYIELFKSTAAEVQQVVKR 357
>gi|296486434|tpg|DAA28547.1| TPA: G-rich RNA sequence binding factor 1 [Bos taurus]
Length = 406
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 104/201 (51%), Gaps = 29/201 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 152 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RSIPRAKSHDEGKDSAVHTG 171
+++R MG+RYVEV+ I NE D S H +S P V+ G
Sbjct: 212 EKHRMYMGQRYVEVYE---------INNEDVDALMKSLHVKSAP-----------MVNDG 251
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMA 230
++RLRGLP+S + DI+DFF + + I M+ GR TGEA+V+F E + A+
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVD--ITFVMDYRGRRKTGEAYVQFEEPEMASQALL 309
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K R +G+RYIE+FPS E+
Sbjct: 310 KHREEIGNRYIEIFPSRRNEV 330
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ P AL ++
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMASQALLKH 311
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
R+ +G RY+E+F S+R E + + SP
Sbjct: 312 REEIGNRYIEIFPSRRNEVRTHVGSHKGKKIASSP 346
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D++ FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 152 LIRAQGLPWSCTVEDVLSFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 212 EKHRMYMGQRYVEVYEINNEDVD 234
>gi|195395450|ref|XP_002056349.1| GJ10899 [Drosophila virilis]
gi|194143058|gb|EDW59461.1| GJ10899 [Drosophila virilis]
Length = 615
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 109/215 (50%), Gaps = 33/215 (15%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCV 101
G V + P F +RLRGLP+ T ++ +F +++++ ++ + K TGEA+
Sbjct: 54 GNVGESPKF--IRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRVDGKNTGEAYVE 111
Query: 102 LGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHD 161
+ V+ A + N+ +MG RY+EVF + +E A E GG H
Sbjct: 112 VASQDDVEEARKLNKASMGHRYIEVFVATPKE-----AKEAMRKTGGHGH---------- 156
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEF 219
+++LRGLP++ + I +FF + D I M+ GR TGEAFV+F
Sbjct: 157 --------AFVVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGRATGEAFVQF 208
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
+ +D++ A+ ++R +G RYIE+F SS EM A
Sbjct: 209 ESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 243
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+++ V + +RGLP+++ ++D+ FF + ++ I N G +G A F +
Sbjct: 498 RNNDVEYYTIHMRGLPYNSFENDVFKFFDP--IRPANVRINYNKKGLHSGTADAYFDTYD 555
Query: 224 DSKAAMAKDRMTLGSRYIELF 244
DS+ AM + R +GSRYIELF
Sbjct: 556 DSQLAMKRHREQMGSRYIELF 576
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ + +RGLP++ E DV +FF + +V + +K +G A A++R
Sbjct: 504 YYTIHMRGLPYNSFENDVFKFFDPIRPANVRINYNKKGLHSGTADAYFDTYDDSQLAMKR 563
Query: 115 NRQNMGRRYVEVF 127
+R+ MG RY+E+F
Sbjct: 564 HREQMGSRYIELF 576
>gi|195108109|ref|XP_001998635.1| GI24079 [Drosophila mojavensis]
gi|193915229|gb|EDW14096.1| GI24079 [Drosophila mojavensis]
Length = 605
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 109/215 (50%), Gaps = 33/215 (15%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCV 101
G V + P F +RLRGLP+ T ++ +F +++++ ++ + K TGEA+
Sbjct: 52 GSVGESPKF--IRLRGLPWSATHKEILDFLVNVEVLNGSQGIHLVTSRLDGKNTGEAYVE 109
Query: 102 LGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHD 161
+ V+ A + N+ +MG RY+EVF + +E A E GG H
Sbjct: 110 VASQEDVEEARKLNKASMGHRYIEVFVATPKE-----AKEAMRKTGGHGH---------- 154
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEF 219
+++LRGLP++ + I +FF + D I M+ GR TGEAFV+F
Sbjct: 155 --------AFVVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVMDRRGRATGEAFVQF 206
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
+ +D++ A+ ++R +G RYIE+F SS EM A
Sbjct: 207 ESQDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 241
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+++ V + +RGLP+++ ++D+ FF + ++ I N G +G A F +
Sbjct: 478 RNNDVEYYTIHMRGLPYNSFENDVFKFFDP--IRPANVRINYNKKGLHSGTADAYFDTYD 535
Query: 224 DSKAAMAKDRMTLGSRYIELF 244
DS+ AM + R +GSRYIELF
Sbjct: 536 DSQLAMKRHREQMGSRYIELF 556
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ + +RGLP++ E DV +FF + +V + +K +G A A++R
Sbjct: 484 YYTIHMRGLPYNSFENDVFKFFDPIRPANVRINYNKKGLHSGTADAYFDTYDDSQLAMKR 543
Query: 115 NRQNMGRRYVEVF 127
+R+ MG RY+E+F
Sbjct: 544 HREQMGSRYIELF 556
>gi|324975474|gb|ADY62662.1| putative RNA-binding protein [Hottentotta judaicus]
Length = 180
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 100/198 (50%), Gaps = 29/198 (14%)
Query: 60 RLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
R RGLP+ ++ D+A+FF GL+IV L + + GEA D AL+R++
Sbjct: 1 RARGLPWQSSDQDIAKFFRGLNIVRGGVALCLSPQGRRNGEALVRFVNQEHRDMALKRHK 60
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG--ILR 174
++G+RY+EV Y+A + +V GGS H E + G I+R
Sbjct: 61 HHIGQRYIEV--------YRATGEDFVNVAGGSNH----------EAQTFLSRGGQVIVR 102
Query: 175 LRGLPFSAGKDDIMDFFK--DFVL----SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ +++FF D V SE+ + DGR TG+AFV F E + A
Sbjct: 103 MRGLPYDCTPQQVIEFFSTGDIVCQVMDSEEGVLFVRKPDGRATGDAFVLFETEEMAGKA 162
Query: 229 MAKDRMTLGSRYIELFPS 246
+ K R +GSRYIELF S
Sbjct: 163 LQKHRQVIGSRYIELFRS 180
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV--------DVLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+DCT V EFF DIV VLFV K + + TG+AF +
Sbjct: 100 IVRMRGLPYDCTPQQVIEFFSTGDIVCQVMDSEEGVLFVRKPDGRATGDAFVLFETEEMA 159
Query: 109 DFALQRNRQNMGRRYVEVFRS 129
ALQ++RQ +G RY+E+FRS
Sbjct: 160 GKALQKHRQVIGSRYIELFRS 180
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
R RGLP+ + DI FF+ + + + ++ GR GEA V F N E A+ + +
Sbjct: 1 RARGLPWQSSDQDIAKFFRGLNIVRGGVALCLSPQGRRNGEALVRFVNQEHRDMALKRHK 60
Query: 234 MTLGSRYIELFPSSHEE 250
+G RYIE++ ++ E+
Sbjct: 61 HHIGQRYIEVYRATGED 77
>gi|340372253|ref|XP_003384659.1| PREDICTED: epithelial splicing regulatory protein 1-like
[Amphimedon queenslandica]
Length = 848
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 18/210 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
VR++GLP+ TE D+ EFF V +L V + + K +G+AF V V+ A
Sbjct: 307 TVRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSEAHVEEA 366
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH---RSIPRAKSHDEGKDSAV 168
L+++R N+ RY+EVF S +E+ + + G+P R S K
Sbjct: 367 LKKHRNNLMGRYIEVFHSSLKEFLVVLN------KSGTPEQLDRGGGGGGSGGASKRGGS 420
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAED-S 225
++LRGLP+ A +D++ FF D + + IH+ +N+ RPTG+ FV+ + + +
Sbjct: 421 EKNCVKLRGLPWEATPEDVISFFGDLNRSIEQQGIHMVLNAQSRPTGDCFVQMTSVDAAT 480
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+AA R +G RYIE+F S ++ AL
Sbjct: 481 RAANELHRQNIGRRYIEVFQVSGNDVTYAL 510
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 123/253 (48%), Gaps = 41/253 (16%)
Query: 16 MGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPP-----FPVVRLRGLPFDCTE 70
M Q+++ QG F +P + +Y + +Q P VVRLRGLPF
Sbjct: 173 MAKAAQKMLVQGHVFE-SPETVQ------QSYSHTNQVNPDNVCDGCVVRLRGLPFSADH 225
Query: 71 VDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
D+A F GL+I+ V ++ + TGEA VL Q FALQR+R + +RYVEV+
Sbjct: 226 NDIALFLSGLNIIPGGVVFSINPVGRRTGEAIVVLEGEDQAQFALQRDRHYLHQRYVEVY 285
Query: 128 RSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDI 187
+ ++ + D G S V T +R++GLP+ A + DI
Sbjct: 286 EASPDNFF-----QFCDTTGSS----------------EKVFT--VRMQGLPYRATESDI 322
Query: 188 MDFFKDF--VLSE-DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
M+FF+ V +E D I I DG+ +G+AF F++ + A+ K R L RYIE+F
Sbjct: 323 MEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSEAHVEEALKKHRNNLMGRYIEVF 382
Query: 245 PSSHEEMDEALSR 257
SS +E L++
Sbjct: 383 HSSLKEFLVVLNK 395
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 15/181 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVH----KNNKFTGEAFCVLGYPLQVDFAL 112
V+LRGLP++ T DV FF L+ ++ +H ++ TG+ F + VD A
Sbjct: 424 CVKLRGLPWEATPEDVISFFGDLNRSIEQQGIHMVLNAQSRPTGDCFVQM---TSVDAAT 480
Query: 113 ----QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
+ +RQN+GRRY+EVF+ + A+ + R G H + K V
Sbjct: 481 RAANELHRQNIGRRYIEVFQVSGNDVTYALMDTGGGSRPGGGHAYYGGGGGNKRKK---V 537
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+ +++ RGLPF+ + D++DFF DF + E I + N +GR TG A++ F + D++ A
Sbjct: 538 SSAVVKARGLPFNTKEYDLVDFFADFNVDESDIELIYNHNGRSTGVAYINFQSLNDARQA 597
Query: 229 M 229
+
Sbjct: 598 V 598
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 102/211 (48%), Gaps = 31/211 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQVDF-AL 112
VV+ RGLPF+ E D+ +FF ++ +++++ H N + TG A+ ++F +L
Sbjct: 541 VVKARGLPFNTKEYDLVDFFADFNVDESDIELIYNH-NGRSTGVAY--------INFQSL 591
Query: 113 QRNRQ---NMGRRYVEVFRSKRQEYYKAIANEVSDVR-----GGSPHRSIPRAKSHDEGK 164
RQ ++ +Y+ K + ++ VS+ R R A E +
Sbjct: 592 NDARQAVRDLNHKYIG--HHKPSSLKRVSSSPVSNYRLVNFSNRGLKRDCSTATPSGEAE 649
Query: 165 DSAVHTGILR----LRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVE 218
+V+ G+++ L+G+P+ D + FF D + ED IH+ + G+ TG+ V
Sbjct: 650 GESVNQGVIQNCLLLKGIPWETTVDKVTAFFGDLSSNIVEDGIHLLYDKFGQSTGQCIVH 709
Query: 219 FANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248
+A + A+ +R LG+RY++L P S+
Sbjct: 710 MTDAASVQNAVGMLNRHYLGNRYVDLIPCSN 740
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 16/191 (8%)
Query: 61 LRGLPFDCTEVDVAEFFHGL--DIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFAL-QR 114
L+G+P++ T V FF L +IV+ L K + TG+ + V A+
Sbjct: 664 LKGIPWETTVDKVTAFFGDLSSNIVEDGIHLLYDKFGQSTGQCIVHMTDAASVQNAVGML 723
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK-DSAVHTGIL 173
NR +G RYV++ +A D +I +S D+ K + I+
Sbjct: 724 NRHYLGNRYVDLIPCSNYYAKYQVARMKRD--------NIKSTESIDDKKLNRLTPLTII 775
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-D 232
+ GLPFSA D+++FF +F + +I+I + R G AFV F + D+ A+ K D
Sbjct: 776 KAGGLPFSANVTDLVNFFVEFNVPASNINIVYDGTNRSVGIAFVGFQSRSDAVDAVKKLD 835
Query: 233 RMTLGSRYIEL 243
R +G RY++L
Sbjct: 836 REYIGRRYVDL 846
>gi|113951757|ref|NP_001039317.1| G-rich sequence factor 1 [Danio rerio]
gi|112418830|gb|AAI22227.1| Zgc:153305 [Danio rerio]
gi|182890996|gb|AAI64250.1| Zgc:153305 protein [Danio rerio]
Length = 301
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 32/227 (14%)
Query: 29 SFYGTPPSSSFMYNPPPAY---GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFH------G 79
S PS Y P P Y +Q +V+ +GLP+ CT D+ FF G
Sbjct: 6 SLCSEAPSKDDEYPPLPEYTPGSEENQAKELFIVQAKGLPWSCTAEDIMSFFSECRIRGG 65
Query: 80 LDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 139
++ V +L+ +K K +G+AF L + V AL ++R R +EV + +
Sbjct: 66 VNGVHILY-NKYGKPSGQAFIELEHEEDVGKALDQHRHYPRDRLIEV---------REVT 115
Query: 140 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 199
N+ ++ +I +A D+ ++RLRGLP+S + DI+ FF + ED
Sbjct: 116 NKDAE--------AILKASKERVETDT-----VVRLRGLPYSCTEGDIIRFFSGLDVVED 162
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246
+ I +N G+ +G+AFVEFA ++ A+ KDR LG+RYIE+FP+
Sbjct: 163 GVTIILNRRGKSSGDAFVEFATKAMAEKALKKDREILGNRYIEIFPA 209
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 98/177 (55%), Gaps = 14/177 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLP+ CTE D+ FF GLD+V+ + +++ K +G+AF + AL++
Sbjct: 135 VVRLRGLPYSCTEGDIIRFFSGLDVVEDGVTIILNRRGKSSGDAFVEFATKAMAEKALKK 194
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS-IPRAKSHDEGKDSAVHTGIL 173
+R+ +G RY+E+F + + AI S R R PRA+ +++AV ++
Sbjct: 195 DREILGNRYIEIFPAMKS----AIP---SQNRSWQNDRVFTPRAED-PPLRNTAVTKNVI 246
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+RGLPF A +DI+ FF L + + + +G+PTGEA F ED+ AM+
Sbjct: 247 HMRGLPFDAKAEDIVKFFAPVRLMK--VVVEFGPEGKPTGEAEAYFKTHEDAVLAMS 301
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I++ +GLP+S +DIM FF + + + +HI N G+P+G+AF+E + ED A+
Sbjct: 38 IVQAKGLPWSCTAEDIMSFFSECRIRGGVNGVHILYNKYGKPSGQAFIELEHEEDVGKAL 97
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ R R IE+ ++++ + L +
Sbjct: 98 DQHRHYPRDRLIEVREVTNKDAEAILKASK 127
>gi|358341226|dbj|GAA32134.2| heterogeneous nuclear ribonucleoprotein F/H [Clonorchis sinensis]
Length = 404
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 27/206 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ D+ +FF + I + + F N + GEAF L +++ A
Sbjct: 3 VVRIRGLPYSARADDIIDFFKDVKIKNGKRGIFFPQGPNGRSNGEAFIELESKQEIEKAT 62
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDE-GKDSAVHTG 171
+ ++MGRRY+EVF S QE A+ HD+ +D +
Sbjct: 63 AHHNEHMGRRYIEVFPSTEQEMNNAMGK-------------------HDQYTRDRKEY-- 101
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RLRGLP+ K +I FF ++ + I + ++ GR TGEA+V+F +AE A K
Sbjct: 102 VVRLRGLPYDTEKKEIYAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSAEMLARAKEK 161
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+G RYIE+F SS E + + R
Sbjct: 162 HMEKIGHRYIEIFESSMLEANSTIQR 187
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 66/109 (60%), Gaps = 10/109 (9%)
Query: 147 GGSPHRSIPRAKS-------HDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSE 198
GG P P +KS + E +D TG +RLRGLPFSA DDI F L
Sbjct: 271 GGPPSHMGPGSKSGGYGPMSNPEPEDPQSVTGHSVRLRGLPFSATADDIDRFLAP--LQP 328
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
++ I MNS GRPTGEA V+FA+ +++K AM KDR +GSRYIELF +S
Sbjct: 329 VNVRIRMNSSGRPTGEAVVDFASHDEAKEAMKKDREKIGSRYIELFLAS 377
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLP+D + ++ FF+GL+I L V + TGEA+ + A ++
Sbjct: 102 VVRLRGLPYDTEKKEIYAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSAEMLARAKEK 161
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEV 142
+ + +G RY+E+F S E I ++
Sbjct: 162 HMEKIGHRYIEIFESSMLEANSTIQRQM 189
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGL 80
P +G PPS + YG +S P P VRLRGLPF T D+ F L
Sbjct: 267 PRGFGGPPSHMGPGSKSGGYGPMSNPEPEDPQSVTGHSVRLRGLPFSATADDIDRFLAPL 326
Query: 81 DIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
V+V + ++ + + TGEA + A++++R+ +G RY+E+F
Sbjct: 327 QPVNVRIRMNSSGRPTGEAVVDFASHDEAKEAMKKDREKIGSRYIELF 374
>gi|348520489|ref|XP_003447760.1| PREDICTED: hypothetical protein LOC100697955 [Oreochromis
niloticus]
Length = 1432
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 109/219 (49%), Gaps = 27/219 (12%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V L+ LPF C+EV+V EFF GL + V L + TG A P A++R
Sbjct: 307 VLLQNLPFSCSEVEVREFFRGLGVDAVRLMRDGQGRPTGRAMVKFFSPQDSFEAVKRGGG 366
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-----SAVHTG- 171
MG+R++E+ +++ A+ + G +PH S ++ S +E +D V G
Sbjct: 367 MMGQRFIEITPGSERQW----ASLNDGLAGHAPHNS-SKSNSINESQDLQHRRGNVEAGG 421
Query: 172 ---------------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
+ L+GLP+ A K I +FFK+ + EDSI+I +GR TGE F
Sbjct: 422 RDQRARSRSPHRQEFCVYLKGLPYEADKKQIKEFFKNLDIVEDSIYIAYGPNGRATGEGF 481
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+EF + +D K A+ +GSR+I++ P S + M E +
Sbjct: 482 LEFKSEQDYKGALGAHMQYMGSRFIQVHPISRKGMLEKI 520
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 18/202 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLP++ + + EFF LDIV D +++ N + TGE F AL
Sbjct: 437 CVYLKGLPYEADKKQIKEFFKNLDIVEDSIYIAYGPNGRATGEGFLEFKSEQDYKGALGA 496
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDS---AVHTG 171
+ Q MG R+++V R K + ++ +R R + +GK+
Sbjct: 497 HMQYMGSRFIQVHPISR----KGMLEKIDAIR--------KREAAQGDGKNQDGLKTPRN 544
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +P++ K D+ F + + ED++ + +S G G+A + ED++ A
Sbjct: 545 CAHITNIPYNISKKDVRAFLEGVGIYEDTLKVLTDSHGNGLGQAIFQLRTEEDARKAERL 604
Query: 232 DRMTLGSRYIELFPSSHEEMDE 253
R L R + + ++M E
Sbjct: 605 HRQKLNGRDAFVHLVTFDQMKE 626
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGEHGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
++ + L SS EM + R
Sbjct: 60 TGGSIKGSKVSLLLSSKTEMQNMIELSR 87
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
P ++ + A I++L+ +PF+ D+IMDFF + + S+ + N G PTGE
Sbjct: 808 PGGSNNPSSQRGAAGPTIVKLQNMPFTVTVDEIMDFFYGYQVLPGSVCLQFNEKGLPTGE 867
Query: 215 AFVEFANAEDSKAA-MAKDRMTLGSRYIEL 243
A V F + E++ AA M + +G+R +++
Sbjct: 868 AMVAFQSHEEATAAVMDLNDRPIGARKVKI 897
>gi|25144421|ref|NP_740878.1| Protein HRPF-1, isoform b [Caenorhabditis elegans]
gi|351061233|emb|CCD68996.1| Protein HRPF-1, isoform b [Caenorhabditis elegans]
Length = 362
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 6/198 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
V+ RGLP++ TE ++ +FF I + +N + +G+A V + AL+++R++
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDREH 66
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR----SIPRAKSHDEG-KDSAVHTGIL 173
+G RY+EVF + + E D RG H + PR + D G S+ I+
Sbjct: 67 LGSRYIEVFPAGGAPTRRGDRGERGD-RGDRDHYRSRGAPPRDRYSDRGGPRSSGPDSIV 125
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
RLRGLPFS DI DF + D I + RP GEA+V F E + A +
Sbjct: 126 RLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQRHM 185
Query: 234 MTLGSRYIELFPSSHEEM 251
+G RYIE+F ++H ++
Sbjct: 186 KNIGHRYIEVFEATHRDL 203
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFA 111
P +VRLRGLPF T D+++F L IV +L + + GEA+ V A
Sbjct: 121 PDSIVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIA 180
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYK-AIANEVSDVRGGSP 150
QR+ +N+G RY+EVF + ++ + A N++ R G P
Sbjct: 181 KQRHMKNIGHRYIEVFEATHRDLSRFAEENDLRVPRFGPP 220
>gi|195442063|ref|XP_002068780.1| GK17961 [Drosophila willistoni]
gi|194164865|gb|EDW79766.1| GK17961 [Drosophila willistoni]
Length = 864
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 25/209 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 295 IVRARGLPWQSSDQDIAKFFCGLNVAKGGVALCLSPLGRRNGEALIRFVSQEHRDMALKR 354
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 355 HKHHIGARYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 398
Query: 175 LRGLPFSAGKDDIMDFFK------DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+RGLP+ ++DFF + + + DGR TG+AFV FA D+ A
Sbjct: 399 MRGLPYDCTAKQVLDFFTTGDSPCSVLDGTEGVLFVKKPDGRATGDAFVLFALEADAPKA 458
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 459 LGRHRESIGQRYIELFRSTTAEVQQVLNR 487
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 118/251 (47%), Gaps = 51/251 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLD----IVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP+DCT V +FF D ++D VLFV K + + TG+AF +
Sbjct: 396 IIRMRGLPYDCTAKQVLDFFTTGDSPCSVLDGTEGVLFVKKPDGRATGDAFVLFALEADA 455
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAI-------------ANEVSDVRGGSPHRSIP 155
AL R+R+++G+RY+E+FRS E + + ++ + P +P
Sbjct: 456 PKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKTYEANNSHSQPPLIAQLPQMQLP 515
Query: 156 --------RAKSHDEGK------------DSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 195
H S +RLRGLP+ A + I+ F DF
Sbjct: 516 LLPQVGAIAIAGHGHANPLCPIPPPQHLITSGTIKNCIRLRGLPYEAMVEHILHFLDDFA 575
Query: 196 --LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS--RYIELFPSS 247
+ +H+ +N+ G+P+GEAF++ ++EDS A+ + M G RYIE+F S
Sbjct: 576 KHIIYQGVHMVINAQGQPSGEAFIQM-DSEDSARLCAQRKHNQFMVFGKKFRYIEVFQCS 634
Query: 248 HEEMDEALSRG 258
++M+ L+ G
Sbjct: 635 GDDMNMVLNGG 645
>gi|388499278|gb|AFK37705.1| unknown [Medicago truncatula]
Length = 94
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 65/91 (71%)
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+T IL++RGLPF K I+DFFKD+ L E +HI DG+ TGEA+VEF + +++K A
Sbjct: 3 YTEILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKVTGEAYVEFVSPDEAKRA 62
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
M KD+MT+GSRY+ELFP + +E A SR R
Sbjct: 63 MFKDKMTIGSRYVELFPFTPDEARRAESRSR 93
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
++++RGLPF T+ + +FF +++ + + K TGEA+ P + A+ +
Sbjct: 6 ILKMRGLPFLVTKSQIIDFFKDYKLIEGRVHIACRPDGKVTGEAYVEFVSPDEAKRAMFK 65
Query: 115 NRQNMGRRYVEVF 127
++ +G RYVE+F
Sbjct: 66 DKMTIGSRYVELF 78
>gi|63991866|gb|AAY40942.1| unknown [Homo sapiens]
gi|119626039|gb|EAX05634.1| G-rich RNA sequence binding factor 1, isoform CRA_b [Homo sapiens]
Length = 435
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 117 YSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIR 176
Query: 84 D-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 177 NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 227
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS V+ G++RLRGLP+S + DI+DFF + +
Sbjct: 228 NNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 277
Query: 199 DSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ GR TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 278 --ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 329
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 211 EKHRMYMGQRYVEVYEINNEDVD 233
>gi|25144418|ref|NP_740877.1| Protein HRPF-1, isoform a [Caenorhabditis elegans]
gi|351061232|emb|CCD68995.1| Protein HRPF-1, isoform a [Caenorhabditis elegans]
Length = 549
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 100/198 (50%), Gaps = 6/198 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
V+ RGLP++ TE ++ +FF I + +N + +G+A V + AL+++R++
Sbjct: 7 VQCRGLPWEATEQELRDFFGNNGIESLEIPRRNGRTSGDAKVVFTNEEDYNNALKKDREH 66
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR----SIPRAKSHDEG-KDSAVHTGIL 173
+G RY+EVF + + E D RG H + PR + D G S+ I+
Sbjct: 67 LGSRYIEVFPAGGAPTRRGDRGERGD-RGDRDHYRSRGAPPRDRYSDRGGPRSSGPDSIV 125
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
RLRGLPFS DI DF + D I + RP GEA+V F E + A +
Sbjct: 126 RLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIAKQRHM 185
Query: 234 MTLGSRYIELFPSSHEEM 251
+G RYIE+F ++H ++
Sbjct: 186 KNIGHRYIEVFEATHRDL 203
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD-GRPTGEAFVEFANAEDSKAAMA 230
+LR+RG+PF A + D+ DFF + + + + + RP+G+A V F N +D A+
Sbjct: 472 VLRMRGVPFRASEADVYDFF--HPIRPNQVELLRDHQFQRPSGDARVIFYNRKDYDDALM 529
Query: 231 KDRMTLGSRYIELFPSS 247
KD+ +G RYIE+ P +
Sbjct: 530 KDKQYMGERYIEMIPDN 546
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFA 111
P +VRLRGLPF T D+++F L IV +L + + GEA+ V A
Sbjct: 121 PDSIVRLRGLPFSVTSRDISDFLAPLPIVRDGILLPDQQRARPGGEAYVCFETMESVQIA 180
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYK-AIANEVSDVRGGSP 150
QR+ +N+G RY+EVF + ++ + A N++ R G P
Sbjct: 181 KQRHMKNIGHRYIEVFEATHRDLSRFAEENDLRVPRFGPP 220
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V+R+RG+PF +E DV +FFH + + V++L H+ + +G+A + D AL ++
Sbjct: 472 VLRMRGVPFRASEADVYDFFHPIRPNQVELLRDHQFQRPSGDARVIFYNRKDYDDALMKD 531
Query: 116 RQNMGRRYVEVF 127
+Q MG RY+E+
Sbjct: 532 KQYMGERYIEMI 543
>gi|58476100|gb|AAH89313.1| Hnrpf protein [Mus musculus]
Length = 395
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 102/185 (55%), Gaps = 24/185 (12%)
Query: 72 DVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 126
DV F I D V F++ + + +GEAF L V AL+++R++MG RY+EV
Sbjct: 6 DVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 65
Query: 127 FRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 186
F+S R E + + S P + DSA + G +RLRGLPF K++
Sbjct: 66 FKSHRTEMDWVLKH------------SGPNSA------DSA-NDGFVRLRGLPFGCTKEE 106
Query: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246
I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F S
Sbjct: 107 IVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 166
Query: 247 SHEEM 251
S EE+
Sbjct: 167 SQEEV 171
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 270 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 327
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 328 DRANMQHRYIELFLNS 343
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF CT+ ++ +FF GL+IV L V K TGEAF + AL ++
Sbjct: 93 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 152
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+EVF+S ++E
Sbjct: 153 KERIGHRYIEVFKSSQEE 170
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 185 DDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
+D+ +F D + + +H +GR +GEAFVE + +D K A+ KDR ++G RYIE
Sbjct: 5 EDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIE 64
Query: 243 LFPSSHEEMDEAL 255
+F S EMD L
Sbjct: 65 VFKSHRTEMDWVL 77
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 261 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 320
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 321 AVAAMSKDRANMQHRYIELF 340
>gi|195571637|ref|XP_002103809.1| GD20630 [Drosophila simulans]
gi|194199736|gb|EDX13312.1| GD20630 [Drosophila simulans]
Length = 587
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 33/210 (15%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCVLG 103
V + P F VRLRGLP+ T ++ +F +++ + ++ + K TGEA+ +
Sbjct: 44 VGESPKF--VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
V+ A + N+ +MG RY+EVF + +E +A+ R I G
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------RKIS-------G 141
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFAN 221
+A +++LRGLP++ + I +FF + D I M+ GR TGEAFV+F +
Sbjct: 142 HGTAF---VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGRATGEAFVQFES 198
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D++ A+ ++R +G RYIE+F SS EM
Sbjct: 199 QDDTEQALGRNREKIGHRYIEIFRSSIAEM 228
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 475 GNDVEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 530
Query: 223 EDSKAAMAKDRMTLGSRYIELF 244
EDS+ AM + R +GSRYIELF
Sbjct: 531 EDSQVAMKRHREQMGSRYIELF 552
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ + +RGLP+ E DV +FF + +V + +K +G A A++R
Sbjct: 480 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 539
Query: 115 NRQNMGRRYVEVF 127
+R+ MG RY+E+F
Sbjct: 540 HREQMGSRYIELF 552
>gi|195329730|ref|XP_002031563.1| GM26067 [Drosophila sechellia]
gi|194120506|gb|EDW42549.1| GM26067 [Drosophila sechellia]
Length = 563
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 33/210 (15%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCVLG 103
V + P F VRLRGLP+ T ++ +F +++ + ++ + K TGEA+ +
Sbjct: 44 VGESPKF--VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
V+ A + N+ +MG RY+EVF + +E +A+ R I G
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------RKIS-------G 141
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFAN 221
+A +++LRGLP++ + I +FF + D I M+ GR TGEAFV+F +
Sbjct: 142 HGTAF---VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGRATGEAFVQFES 198
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D++ A+ ++R +G RYIE+F SS EM
Sbjct: 199 QDDTEQALGRNREKIGHRYIEIFRSSIAEM 228
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 451 GNDVEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 506
Query: 223 EDSKAAMAKDRMTLGSRYIELF 244
EDS+ AM + R +GSRYIELF
Sbjct: 507 EDSQVAMKRHREQMGSRYIELF 528
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ + +RGLP+ E DV +FF + +V + +K +G A A++R
Sbjct: 456 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 515
Query: 115 NRQNMGRRYVEVF 127
+R+ MG RY+E+F
Sbjct: 516 HREQMGSRYIELF 528
>gi|386768028|ref|NP_001246347.1| fusilli, isoform H [Drosophila melanogaster]
gi|383302505|gb|AFH08101.1| fusilli, isoform H [Drosophila melanogaster]
Length = 526
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 118/233 (50%), Gaps = 36/233 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+D T V +FF H LD + VLFV K + + TG+AF +
Sbjct: 47 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 106
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR----GGS----------PHRS 153
AL R+R+++G+RY+E+FRS E + + N D + GG P
Sbjct: 107 APKALGRHRESIGQRYIELFRSTTAE-VQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQ 165
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRP 211
+P H S +RLRGLP+ A + I+ F DF + +H+ +N+ G+P
Sbjct: 166 LPLLPQHL--ITSGTTKNCIRLRGLPYEAMVEHILHFLDDFAKHIIYQGVHMVINAQGQP 223
Query: 212 TGEAFVEFANAEDSKAAMAKDR----MTLGS--RYIELFPSSHEEMDEALSRG 258
+GEAF++ + E+S A+ R M G RYIE+F S ++M+ L+ G
Sbjct: 224 SGEAFIQM-DLEESARLCAQRRHNHYMMFGKKYRYIEVFQCSGDDMNMVLNGG 275
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 23/155 (14%)
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
AL+R++ ++G RY+EV+R+ +++ AIA S+ A++ K + V
Sbjct: 1 MALKRHKHHIGTRYIEVYRASGEDFL-AIAGGASN-----------EAQAFLS-KGAQV- 46
Query: 170 TGILRLRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANA 222
I+R+RGLP+ A ++DFF VL + + DGR TG+AFV FAN
Sbjct: 47 --IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANE 104
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 105 TDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 139
>gi|26251966|gb|AAH40485.1| GRSF1 protein [Homo sapiens]
Length = 435
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 38/236 (16%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 117 YSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIR 176
Query: 84 D-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
+ ++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 177 NGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 227
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS V+ G++RLRGLP+S + DI+DFF
Sbjct: 228 NNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGL---- 273
Query: 199 DSIHITMNSD---GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ ++IT D R TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 274 NIVYITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEV 329
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 151 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 210
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 211 EKHRMYMGQRYVEVYEINNEDVD 233
>gi|194901932|ref|XP_001980505.1| GG17187 [Drosophila erecta]
gi|190652208|gb|EDV49463.1| GG17187 [Drosophila erecta]
Length = 595
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 33/210 (15%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCVLG 103
V + P F VRLRGLP+ T ++ +F +++ + ++ + K TGEA+ +
Sbjct: 44 VGESPKF--VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
V+ A + N+ +MG RY+EVF + +E +A+ R I G
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------RKIS-------G 141
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFAN 221
+A +++LRGLP++ + I +FF + D I M+ GR TGEAFV+F +
Sbjct: 142 HGTAF---VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGRATGEAFVQFES 198
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D++ A+ ++R +G RYIE+F SS EM
Sbjct: 199 QDDTEQALGRNREKIGHRYIEIFRSSIAEM 228
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 475 GNDIEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 530
Query: 223 EDSKAAMAKDRMTLGSRYIELF 244
EDS+ AM + R +GSRYIELF
Sbjct: 531 EDSQVAMKRHREQMGSRYIELF 552
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ + +RGLP+ E DV +FF + +V + +K +G A A++R
Sbjct: 480 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 539
Query: 115 NRQNMGRRYVEVF 127
+R+ MG RY+E+F
Sbjct: 540 HREQMGSRYIELF 552
>gi|195501785|ref|XP_002097942.1| GE10080 [Drosophila yakuba]
gi|194184043|gb|EDW97654.1| GE10080 [Drosophila yakuba]
Length = 597
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 33/210 (15%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCVLG 103
V + P F VRLRGLP+ T ++ +F +++ + ++ + K TGEA+ +
Sbjct: 45 VGESPKF--VRLRGLPWSATHKEILDFLENVNVTNGSSGIHLVTSRVDGKNTGEAYVEVA 102
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
V+ A + N+ +MG RY+EVF + +E +A+ R I G
Sbjct: 103 SQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------RKIS-------G 142
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFAN 221
+A +++LRGLP++ + I +FF + D I M+ GR TGEAFV+F +
Sbjct: 143 HGTAF---VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGRATGEAFVQFES 199
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D++ A+ ++R +G RYIE+F SS EM
Sbjct: 200 QDDTEQALGRNREKIGHRYIEIFRSSIAEM 229
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 478 GNDIEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 533
Query: 223 EDSKAAMAKDRMTLGSRYIELF 244
EDS+ AM + R +GSRYIELF
Sbjct: 534 EDSQVAMKRHREQMGSRYIELF 555
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ + +RGLP+ E DV +FF + +V + +K +G A A++R
Sbjct: 483 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 542
Query: 115 NRQNMGRRYVEVF 127
+R+ MG RY+E+F
Sbjct: 543 HREQMGSRYIELF 555
>gi|24646105|ref|NP_650120.1| glorund, isoform A [Drosophila melanogaster]
gi|24646107|ref|NP_731639.1| glorund, isoform B [Drosophila melanogaster]
gi|7299517|gb|AAF54704.1| glorund, isoform A [Drosophila melanogaster]
gi|7299518|gb|AAF54705.1| glorund, isoform B [Drosophila melanogaster]
gi|19528177|gb|AAL90203.1| AT27789p [Drosophila melanogaster]
Length = 586
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 33/210 (15%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCVLG 103
V + P F VRLRGLP+ T ++ +F +++ + ++ + K TGEA+ +
Sbjct: 44 VGESPKF--VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
V+ A + N+ +MG RY+EVF + +E +A+ R I G
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------RKIS-------G 141
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFK--DFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+A +++LRGLP++ + I +FF D + I M+ GR TGEAFV+F +
Sbjct: 142 HGTAF---VVKLRGLPYAVTEQQIEEFFSGLDIKTDREGILFVMDRRGRATGEAFVQFES 198
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D++ A+ ++R +G RYIE+F SS EM
Sbjct: 199 QDDTEQALGRNREKIGHRYIEIFRSSIAEM 228
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 475 GNDIEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 530
Query: 223 EDSKAAMAKDRMTLGSRYIELF 244
EDS+ AM + R +GSRYIELF
Sbjct: 531 EDSQVAMKRHREQMGSRYIELF 552
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ + +RGLP+ E DV +FF + +V + +K +G A A++R
Sbjct: 480 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 539
Query: 115 NRQNMGRRYVEVF 127
+R+ MG RY+E+F
Sbjct: 540 HREQMGSRYIELF 552
>gi|395510177|ref|XP_003759357.1| PREDICTED: epithelial splicing regulatory protein 2, partial
[Sarcophilus harrisii]
Length = 470
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 11/211 (5%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
++R+RGLPF T DV F V +LFV + + + TG+AF + A
Sbjct: 76 IIRMRGLPFTATPADVLAFLGPECPVTGGHEGLLFVRYPDGRPTGDAFALFACEELAQSA 135
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIPRAKSHDEGKDSAVHT 170
L++++ +G+RY+E+FRS E + + S + P IP + + V
Sbjct: 136 LRKHKGILGKRYIELFRSTAAEVQQVLNRYTSSPLIPTLPAPLIPVLPAPFPLAGAGVRD 195
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+ RLRGLP++A DDI+ F + + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 196 CV-RLRGLPYTASIDDILGFLGEVAGDIRPHGVHMVLNQQGRPSGDAFIQMKSADRALVA 254
Query: 229 MAK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + + RY+E+FP S EEM L G
Sbjct: 255 AQRCHKKMMKERYVEVFPCSGEEMSLVLMGG 285
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 19/175 (10%)
Query: 86 LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 145
L ++ + GEA Q D AL+R++ +MG RY+EV+++ +E+ K +
Sbjct: 6 LCLNAQGRRNGEALVRFVDSEQRDLALERHKHHMGARYIEVYKASGEEFLK--------I 57
Query: 146 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIH 202
GG+ H D+ I+R+RGLPF+A D++ F + +
Sbjct: 58 AGGTSHEVAQFLSREDQV--------IIRMRGLPFTATPADVLAFLGPECPVTGGHEGLL 109
Query: 203 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
DGRPTG+AF FA E +++A+ K + LG RYIELF S+ E+ + L+R
Sbjct: 110 FVRYPDGRPTGDAFALFACEELAQSALRKHKGILGKRYIELFRSTAAEVQQVLNR 164
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++R++GLP++AG DI+ FF+ + L DS+ + + GRP G+A V F + + ++ A+A
Sbjct: 395 ALVRMQGLPYTAGVKDILSFFQGYQLPADSVLVLHSFSGRPRGDALVTFPSLDAARRAVA 454
Query: 231 KDR-MTLGSRYIEL 243
++ TLG ++++L
Sbjct: 455 EEHGRTLGGQHVQL 468
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
+ + +N+ GR GEA V F ++E A+ + + +G+RYIE++ +S EE
Sbjct: 4 VALCLNAQGRRNGEALVRFVDSEQRDLALERHKHHMGARYIEVYKASGEE 53
>gi|268536900|ref|XP_002633585.1| Hypothetical protein CBG05462 [Caenorhabditis briggsae]
Length = 588
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 32/200 (16%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
VRLRGLPF+ TE D+ EFF GL + V FV + GEA+ ++ +R+
Sbjct: 65 VRLRGLPFNATEKDIHEFFTGLIVKRVKFVCTTGRPNGEAYVEFASTDDAGRGMECDRKE 124
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG----ILR 174
M RY+E+F S+P ++ +E + A G ++R
Sbjct: 125 MSNRYIEIF-------------------------SVPISEGENEFRPDADGNGEENHVVR 159
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHI--TMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
LRG+P+S ++D+ FF+ I I T RP+GEAFV F + +K AM +
Sbjct: 160 LRGVPWSCKEEDVKQFFQGLEPPPAEIVIGGTSGPRPRPSGEAFVRFTSQAAAK-AMEYN 218
Query: 233 RMTLGSRYIELFPSSHEEMD 252
M +G+RY+E+F SS E++
Sbjct: 219 NMHMGTRYVEVFMSSMVELN 238
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+++ + +RLRGLPF+A + DI +FF ++ T GRP GEA+VEFA+ +D+
Sbjct: 58 ASLKSQFVRLRGLPFNATEKDIHEFFTGLIVKRVKFVCTT---GRPNGEAYVEFASTDDA 114
Query: 226 KAAMAKDRMTLGSRYIELF 244
M DR + +RYIE+F
Sbjct: 115 GRGMECDRKEMSNRYIEIF 133
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGL-----DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
VVRLRG+P+ C E DV +FF GL +IV + +GEAF A+
Sbjct: 157 VVRLRGVPWSCKEEDVKQFFQGLEPPPAEIVIGGTSGPRPRPSGEAFVRFTSQAAAK-AM 215
Query: 113 QRNRQNMGRRYVEVFRS 129
+ N +MG RYVEVF S
Sbjct: 216 EYNNMHMGTRYVEVFMS 232
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLP+ A I FF + SI + +N GR +G+A EF + +D ++ +A++
Sbjct: 329 IYMRGLPYDADHHAIEAFFSPLRV--HSIKLGINEAGRSSGDAIAEFDSYQDLQSGLARN 386
Query: 233 RMTLGSRYIELF 244
+G RY+ELF
Sbjct: 387 NQRMGRRYVELF 398
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLP+D + FF L + + L +++ + +G+A + L RN Q
Sbjct: 329 IYMRGLPYDADHHAIEAFFSPLRVHSIKLGINEAGRSSGDAIAEFDSYQDLQSGLARNNQ 388
Query: 118 NMGRRYVEVFRSK 130
MGRRYVE+F ++
Sbjct: 389 RMGRRYVELFDTR 401
>gi|193636729|ref|XP_001950119.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Acyrthosiphon pisum]
Length = 440
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 27/208 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV--------LFVHKNNKFTGEAFCVLGYPLQVD 109
VV++ GL T D+ +F + L V +++ K + +A+ + +
Sbjct: 24 VVKMHGLSLSTTADDIIKFLNTLGEAKVKDGASGVHFTMNRKGKPSSQAYVEMESEESLK 83
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
AL+++R+ MG RY++VF SKR E AI S + D+ ++
Sbjct: 84 AALKKDREYMGNRYIKVFPSKRSEMEWAIKITGSTL-------------------DNELY 124
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+R+RGLPF K++I++FF+ ++ D I I +NS GR EAFV+F N E+ + A+
Sbjct: 125 DNCVRIRGLPFDYTKNEIVEFFQGLEITPDDITIVINSKGRRMKEAFVQFVNRENLEKAL 184
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
K + RYIE+F SS E+ ++L R
Sbjct: 185 QKHMEKIRFRYIEVFRSSLVEIRKSLKR 212
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 48/231 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV--DV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VR+RGLPFD T+ ++ EFF GL+I D+ + ++ + EAF ++ ALQ+
Sbjct: 127 CVRIRGLPFDYTKNEIVEFFQGLEITPDDITIVINSKGRRMKEAFVQFVNRENLEKALQK 186
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVS------------------------------- 143
+ + + RY+EVFRS E K++
Sbjct: 187 HMEKIRFRYIEVFRSSLVEIRKSLKRRSRQTPYDRMDSFASSGGNSGGRGQYIDMSMRTE 246
Query: 144 -DVRGGSPHRSIPR---------AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193
D+R RS+ R +K+ + +H ++ ++GLP A K+DI FF+
Sbjct: 247 RDMRSFGSGRSMGRPRGGSRGGASKNWNPSPSRPLH--VVHMKGLPLKANKNDIAKFFEP 304
Query: 194 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
L +IH N++ +P GEA VEF N ED+ AM+K++ + RYIELF
Sbjct: 305 --LKPVNIHFIFNNNNQPYGEANVEFGNIEDAVQAMSKNKTFMEHRYIELF 353
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 41 YNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAF 99
+NP P+ P VV ++GLP + D+A+FF L + + NN+ GEA
Sbjct: 273 WNPSPSR-------PLHVVHMKGLPLKANKNDIAKFFEPLKPVNIHFIFNNNNQPYGEAN 325
Query: 100 CVLGYPLQVDFALQRNRQNMGRRYVEVF 127
G A+ +N+ M RY+E+F
Sbjct: 326 VEFGNIEDAVQAMSKNKTFMEHRYIELF 353
>gi|170586440|ref|XP_001897987.1| RNA recognition motif. [Brugia malayi]
gi|158594382|gb|EDP32966.1| RNA recognition motif [Brugia malayi]
Length = 573
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 16/207 (7%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFAL 112
P +RLRGLPF E D FF GL+ + F + N + +GE + L V A
Sbjct: 3 PDTNYIRLRGLPFAAKEQDFF-FFFGLNAKSITFTLTSNGRASGECYVELDDQEAVKEAQ 61
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ +R + RY+EVF E I + V GG + +
Sbjct: 62 KLDRNEINGRYIEVFSVSDAELLMMIRHGVIKSSGGG------------DADSRYASNFV 109
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLP+SA DDI +FF ++ D++ I GRP+GEAFV A E ++ A+ +
Sbjct: 110 VRLRGLPYSATIDDIKEFFSGLEVA-DAV-IDKEPGGRPSGEAFVRLATKEYAELALERS 167
Query: 233 RMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +GSRY+E+F SS +EMD + R
Sbjct: 168 KNYMGSRYVEVFRSSADEMDNSYYAAR 194
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 53/233 (22%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
VVRLRGLP+ T D+ EFF GL++ D V+ + +GEAF L + AL+R++
Sbjct: 109 VVRLRGLPYSATIDDIKEFFSGLEVADAVIDKEPGGRPSGEAFVRLATKEYAELALERSK 168
Query: 117 QNMGRRYVEVFRSKRQE----YYKA--IANEVSD---VRGGSPHRSI------------- 154
MG RYVEVFRS E YY A I S +RG SP
Sbjct: 169 NYMGSRYVEVFRSSADEMDNSYYAARGIPPPTSGPVPLRGISPTLDFRFRDRYADYGRYG 228
Query: 155 ---------PR-----------------AKSHDEGKDSAVHTGILR--LRGLPFSAGKDD 186
PR +D D A++ ++ +RGLP+S D
Sbjct: 229 GPIRLSSLHPRPSPYDRPYYDRDRYYRYGARYDPEFDEAMYDPTVKVFMRGLPYSVTTLD 288
Query: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 239
I +FF+ E I + N + R +G+A V F+ +++ A+++++ +G+R
Sbjct: 289 IEEFFRPLNCVE--IKLGYNEERRLSGDALVTFSTMAEAREALSRNKNNMGTR 339
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
P V +RGLP+ T +D+ EFF L+ V++ L ++ + +G+A + AL
Sbjct: 271 PTVKVFMRGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALVTFSTMAEAREALS 330
Query: 114 RNRQNMGRR 122
RN+ NMG R
Sbjct: 331 RNKNNMGTR 339
>gi|47222987|emb|CAF99143.1| unnamed protein product [Tetraodon nigroviridis]
Length = 388
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 99/188 (52%), Gaps = 24/188 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ C+ +V FF G I++ + F + + + +GEAF + + A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEDDLKVAV 66
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + G G+
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVMKHTGPNCPG-------------------TAGDGL 107
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ + ++ A+ K
Sbjct: 108 IRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDIQGRSTGEAFVQFASQDIAEKALKKH 167
Query: 233 RMTLGSRY 240
+ +G R+
Sbjct: 168 KERIGHRW 175
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDF-VLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S D++ FF +L+ S IH T +GRP+GEAFVE +D K A+
Sbjct: 7 VVRIRGLPWSCSVDEVQRFFSGCKILNNGSGIHFTYTREGRPSGEAFVEMETEDDLKVAV 66
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD +
Sbjct: 67 KKDRETMGHRYVEVFKSNNVEMDWVM 92
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A + DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 268 CVHMRGLPYRATETDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 325
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 326 DKANMQHRYVELFLNS 341
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 268 CVHMRGLPYRATETDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 327
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 328 ANMQHRYVELF 338
>gi|194744433|ref|XP_001954699.1| GF16612 [Drosophila ananassae]
gi|190627736|gb|EDV43260.1| GF16612 [Drosophila ananassae]
Length = 600
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 33/210 (15%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCVLG 103
V + P F +RLRGLP+ T ++ +F +++ + ++ + K TGEA+ +
Sbjct: 47 VGESPKF--IRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGEAYVEVS 104
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
V+ A + N+ +MG RY+EVF + +E +A+ R I G
Sbjct: 105 TQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------RKIS-------G 144
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFAN 221
+A +++LRGLP++ + I +FF + D I M+ GR TGEAFV+F +
Sbjct: 145 HGNAF---VVKLRGLPYAVTEQQIEEFFSGLEIKTDREGILFVMDRRGRATGEAFVQFES 201
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D++ A+ ++R +G RYIE+F SS EM
Sbjct: 202 QDDTEQALGRNREKIGHRYIEIFRSSIAEM 231
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+++ ++D+ FF+ + ++ I N G +G A F EDS+ AM +
Sbjct: 487 TIHMRGLPYTSFENDVFKFFE--PIRPANVRINYNKKGLHSGTADAYFDTYEDSQMAMKR 544
Query: 232 DRMTLGSRYIELF 244
R +GSRYIELF
Sbjct: 545 HREQMGSRYIELF 557
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
+ +RGLP+ E DV +FF + +V + +K +G A A++R+R
Sbjct: 487 TIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQMAMKRHR 546
Query: 117 QNMGRRYVEVF 127
+ MG RY+E+F
Sbjct: 547 EQMGSRYIELF 557
>gi|307176277|gb|EFN65908.1| Heterogeneous nuclear ribonucleoprotein H2 [Camponotus floridanus]
Length = 417
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 36/215 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ T ++ +FF I + + + + + +GEA+ + P ++ A
Sbjct: 14 VVKMRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+R+R +MG RY+EVF++KR E + ++ ++A+ G
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKRSGLNL-------------------ENAMDDGC 114
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I FF + + I + + GR TGEA+V+F N + ++ A+ K
Sbjct: 115 VRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKH 174
Query: 233 RMTLGSR------------YIELFPSSHEEMDEAL 255
+ +G R YIE+F SS E+ ++
Sbjct: 175 KEKIGHRWGTETLYIAGFGYIEIFRSSLSEVRASI 209
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D+IM FF D +S ++ +H+TM+ +GRP+GEA+VE ED + A
Sbjct: 14 VVKMRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
+DR +G RYIE+F + EM+ + R
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKR 101
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
R + G +S VH+ + +RGLPF A + DI DFF+ + ++ I + + GRP+GEA
Sbjct: 284 RGNNDSWGGNSGVHS--IHMRGLPFKATEQDIADFFRP--IEPVNVRIILENGGRPSGEA 339
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELF 244
VEFA E++ AM KD+ + RYIELF
Sbjct: 340 DVEFATHEEAVKAMCKDKSHMSHRYIELF 368
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLPF TE D+A+FF ++ V+V + +N + +GEA + A+ +++
Sbjct: 299 IHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEFATHEEAVKAMCKDKS 358
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 359 HMSHRYIELF 368
>gi|229891743|sp|A8WPC5.2|SYM2_CAEBR RecName: Full=RNA-binding protein sym-2; AltName: Full=Synthetic
lethal with mec-8 protein 2
Length = 634
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 114/207 (55%), Gaps = 21/207 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNN-KFTGEAFCVLGYPLQVDF--ALQ 113
+VR+RGLP+DCT+ + FF L + + +LF+ + + + TG + + + D L
Sbjct: 286 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFITRTDGRPTGNCDAFVQFETEEDAQQGLL 345
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
++RQ +G+RY+E+F+S E + + ++ +P + S ++ KD +
Sbjct: 346 KHRQVIGQRYIELFKSTAAEVQQVVKR--CNLINSAPVVANAVEVSDEKKKDC------V 397
Query: 174 RLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
RLRGLP+ A I++F DF ++ +H+ N+ G P+GEAF++ +E + AA A
Sbjct: 398 RLRGLPYEATVQHIVNFLGDFANMVKFQGVHMVYNNQGNPSGEAFIQMI-SEQAAAATAS 456
Query: 231 ---KDRMTLG--SRYIELFPSSHEEMD 252
+ M +G RYIE+F SS EE++
Sbjct: 457 GVHNNFMCVGKKKRYIEVFQSSAEELN 483
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG--EAFVEFANAEDSKAAM 229
I+R+RGLP+ I FF+ L+E + IT +DGRPTG +AFV+F ED++ +
Sbjct: 286 IVRMRGLPYDCTDTQIRAFFEPLKLTEKILFIT-RTDGRPTGNCDAFVQFETEEDAQQGL 344
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
K R +G RYIELF S+ E+ + + R
Sbjct: 345 LKHRQVIGQRYIELFKSTAAEVQQVVKR 372
>gi|170047639|ref|XP_001851321.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870002|gb|EDS33385.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 677
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 29/227 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG-------LDIVD-VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP+DCT V EFF LD D +LFV K + + TG+AF +
Sbjct: 147 IIRMRGLPYDCTAKQVLEFFANGETSCTVLDGADGILFVKKPDGRATGDAFVLFAQESDA 206
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR----------GGSPHRSIPRAK 158
AL ++R+++G+RY+E+FRS E + + N D + P +P
Sbjct: 207 SKALSKHRESIGQRYIELFRSTTAEVQQVL-NRSMDPKTYEPPQPPLIAALPPVQMPLLP 265
Query: 159 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAF 216
H S +RLRGLP+ A + I+ F +DF + +H+ N+ G+ GEAF
Sbjct: 266 QHV--ITSGTEKNCIRLRGLPYEAKVEHILHFLEDFAKHIVYQGVHLVYNAQGQFNGEAF 323
Query: 217 VEF---ANAEDSKAAMAKDRMTLG--SRYIELFPSSHEEMDEALSRG 258
++ A S M G RYIE+F S ++M+ L+ G
Sbjct: 324 IQMDSEVAAYQSAQQKHHKNMMFGKKQRYIEVFQCSGDDMNMVLNGG 370
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 22/155 (14%)
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
D AL+R++ ++ RY+EV+R+ +++ V GG A + + S
Sbjct: 100 DMALKRHKHHISNRYIEVYRASGEDFLA--------VAGG--------ASNEAQAFLSKG 143
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLS------EDSIHITMNSDGRPTGEAFVEFANA 222
I+R+RGLP+ +++FF + S D I DGR TG+AFV FA
Sbjct: 144 AQVIIRMRGLPYDCTAKQVLEFFANGETSCTVLDGADGILFVKKPDGRATGDAFVLFAQE 203
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
D+ A++K R ++G RYIELF S+ E+ + L+R
Sbjct: 204 SDASKALSKHRESIGQRYIELFRSTTAEVQQVLNR 238
>gi|308453513|ref|XP_003089469.1| hypothetical protein CRE_14401 [Caenorhabditis remanei]
gi|308240262|gb|EFO84214.1| hypothetical protein CRE_14401 [Caenorhabditis remanei]
Length = 264
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 105/213 (49%), Gaps = 14/213 (6%)
Query: 42 NPPPAYGYVSQPPPFP--VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAF 99
N P +S PP VRLRGLPF+ TE D+ EFF GL + V FV + GEA+
Sbjct: 57 NSSPVPNKISSGPPLKGQYVRLRGLPFNATEKDIQEFFSGLGVKRVKFVCTTGRPNGEAY 116
Query: 100 CVLGYPLQVDFALQRNRQNMGRRYV--EVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRA 157
A++ +R+ M RY+ E K++ + V+DV G R P
Sbjct: 117 VEFKTQDDAGKAMENDRKEMSNRYIESEFLIGKQENNSNILVFSVTDVEGEFEFRPDP-- 174
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEA 215
+G H ++RLRG+P+S ++DI FF + +E I T RP+GEA
Sbjct: 175 ----DGNGEENH--VVRLRGIPWSCKEEDINQFFDGLEPLPAEIVIGGTGGPRSRPSGEA 228
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248
FV FA ++AAM + +G+R++ L +SH
Sbjct: 229 FVRFATQAAAEAAMEYNNRHMGTRWVSLVMASH 261
>gi|443701155|gb|ELT99751.1| hypothetical protein CAPTEDRAFT_226859 [Capitella teleta]
Length = 390
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 111/205 (54%), Gaps = 19/205 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG-LDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLP+ + +VA F ++I+ L K+ + +GEA+ L V A
Sbjct: 17 IVRIRGLPWSASHDEVANFLEADVNIMGGRSGIHLTYTKDGRPSGEAYIELASEEDVAKA 76
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIPRAKSHDEGKDSAVHT 170
L++++ +MGRRY+E +S Y + E+ V+ P++ + G + AV
Sbjct: 77 LEKDKHHMGRRYIEGMQSSLYLIYNHVDLEMEWMVKRSGPNQVM--------GNNDAV-- 126
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+RLRGLPF K+++ FF + + I + + GR TG+AFV+FA+ + ++ A
Sbjct: 127 --IRLRGLPFGCSKEEVAHFFSGLEIVPNGITLMQDGQGRSTGDAFVQFASQDIAERAQQ 184
Query: 231 KDRMTLGSRYIELFPSSHEEMDEAL 255
K + +G RYIE+F SS +E+ ++
Sbjct: 185 KHKEKIGHRYIEIFKSSLQELRNSM 209
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 113/225 (50%), Gaps = 37/225 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+RLRGLPF C++ +VA FF GL+IV L + TG+AF + A Q+
Sbjct: 126 VIRLRGLPFGCSKEEVAHFFSGLEIVPNGITLMQDGQGRSTGDAFVQFASQDIAERAQQK 185
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG----------- 163
+++ +G RY+E+F+S QE ++ ++ RGG ++ R +D
Sbjct: 186 HKEKIGHRYIEIFKSSLQELRNSMVPKMMGGRGGGMGGNMGRPGPYDRMDRMGGGGGGGM 245
Query: 164 -------------------KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
+ + H+ +R GLPF A +DDI++FFK +IH
Sbjct: 246 GRGGGRFGPGGGKGGMDNYESTTGHSVHMR--GLPFQAAEDDIVEFFKPLAPVNIAIHYM 303
Query: 205 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 249
DG+ +G+A V+FA +++ AM++DR ++ RYIELF S E
Sbjct: 304 --PDGKASGQADVDFATHQEASEAMSRDRESMEHRYIELFLKSSE 346
>gi|256090131|ref|XP_002581067.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
Length = 472
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLPF D+ FFH I + F N + GEAF L A+
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ Q++GRRY+EVF S + ++++ G P+ S R + +
Sbjct: 64 AHHNQHLGRRYIEVFDS--------CSEDLNNAMGCRPYHSSNRREH------------V 103
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLP+ K +I FF ++ + I + ++ GR TGEA+V+F ++E A K
Sbjct: 104 VRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKEKH 163
Query: 233 RMTLGSRYIELFPSSHEEMDEALSR 257
+G RYIE+F S+ E + + R
Sbjct: 164 MEKIGHRYIEIFESTMMEANMTIQR 188
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
P +D+ + S H+ +R+RGLP+SA K+DI F L +I + N+ RPTGE
Sbjct: 283 PGHYEYDDPQSSTGHS--VRMRGLPYSATKEDIDRFLSP--LQPVNIRMRFNAANRPTGE 338
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A V+FA+ +++K AM KDR +G RYIELF +S
Sbjct: 339 AIVDFASHDEAKEAMKKDREKIGPRYIELFLAS 371
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLP+D + ++ FF+GL+I L V + TGEA+ + A ++
Sbjct: 103 VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKEK 162
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEV 142
+ + +G RY+E+F S E I ++
Sbjct: 163 HMEKIGHRYIEIFESTMMEANMTIQRQM 190
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 30 FYGTPPSSSFMYNPPPAYGYVS-QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LF 87
F G PS + PP Y Y Q VR+RGLP+ T+ D+ F L V++ +
Sbjct: 269 FEGPSPSKGSNFGPPGHYEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQPVNIRMR 328
Query: 88 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
+ N+ TGEA + A++++R+ +G RY+E+F
Sbjct: 329 FNAANRPTGEAIVDFASHDEAKEAMKKDREKIGPRYIELF 368
>gi|328874866|gb|EGG23231.1| hypothetical protein DFA_05363 [Dictyostelium fasciculatum]
Length = 939
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 3/188 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V LRGLP+ +E V EFF LD+ + +F + N K TG+A + +L R++Q
Sbjct: 433 VLLRGLPWGVSEDAVREFFQPLDVSFIDIFYNSNGKQTGDASVEFATEEDANLSLDRHKQ 492
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
MG RY+EV S+R+ S ++ S + S + + +L+LRG
Sbjct: 493 MMGTRYIEVI-SRRKHPPPPPPPSPSQLQLQSSSGQNSGSASGGSSNTTTSNGKVLKLRG 551
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL 236
LPFS DI F + + ++I +TMN +GR +GEA+VEF ++ ++AA++ T+
Sbjct: 552 LPFSISTMDIRKFLNGYPIKSNNILMTMNDEGRFSGEAYVEFQTSDIAQAALSNLQNKTM 611
Query: 237 GSRYIELF 244
SRYIE F
Sbjct: 612 MSRYIEFF 619
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
++LRGLPF+ + DI FF + + I I D RP G A+V F N++D A++++
Sbjct: 801 VKLRGLPFTTTESDISTFFNGLDIVQGGIKIVYQRD-RPMGIAYVTFTNSDDYHQALSRN 859
Query: 233 RMTLGSRYIELFPSS 247
LG RYIE+FPS+
Sbjct: 860 NQHLGPRYIEVFPST 874
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V+LRGLPF TE D++ FF+GLDIV + V++ ++ G A+ AL RN
Sbjct: 800 TVKLRGLPFTTTESDISTFFNGLDIVQGGIKIVYQRDRPMGIAYVTFTNSDDYHQALSRN 859
Query: 116 RQNMGRRYVEVFRSKRQ 132
Q++G RY+EVF S +
Sbjct: 860 NQHLGPRYIEVFPSTSK 876
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V++LRGLPF + +D+ +F +G I ++ ++ +F+GEA+ AL
Sbjct: 546 VLKLRGLPFSISTMDIRKFLNGYPIKSNNILMTMNDEGRFSGEAYVEFQTSDIAQAALS- 604
Query: 115 NRQN--MGRRYVEVFRSKR 131
N QN M RY+E F R
Sbjct: 605 NLQNKTMMSRYIEFFTCDR 623
>gi|353232935|emb|CCD80290.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 497
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLPF D+ FFH I + F N + GEAF L A+
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ Q++GRRY+EVF S + ++++ G P+ S R + +
Sbjct: 64 AHHNQHLGRRYIEVFDS--------CSEDLNNAMGCRPYHSSNRREH------------V 103
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLP+ K +I FF ++ + I + ++ GR TGEA+V+F ++E A K
Sbjct: 104 VRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKEKH 163
Query: 233 RMTLGSRYIELFPSSHEEMDEALSR 257
+G RYIE+F S+ E + + R
Sbjct: 164 MEKIGHRYIEIFESTMMEANMTIQR 188
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 59/93 (63%), Gaps = 4/93 (4%)
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
P +D+ + S H+ +R+RGLP+SA K+DI F L +I + N+ RPTGE
Sbjct: 283 PGHYEYDDPQSSTGHS--VRMRGLPYSATKEDIDRFLSP--LQPVNIRMRFNAANRPTGE 338
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A V+FA+ +++K AM KDR +G RYIELF +S
Sbjct: 339 AIVDFASHDEAKEAMKKDREKIGPRYIELFLAS 371
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLP+D + ++ FF+GL+I L V + TGEA+ + A ++
Sbjct: 103 VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKEK 162
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEV 142
+ + +G RY+E+F S E I ++
Sbjct: 163 HMEKIGHRYIEIFESTMMEANMTIQRQM 190
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 30 FYGTPPSSSFMYNPPPAYGYVS-QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LF 87
F G PS + PP Y Y Q VR+RGLP+ T+ D+ F L V++ +
Sbjct: 269 FEGPSPSKGSNFGPPGHYEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQPVNIRMR 328
Query: 88 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
+ N+ TGEA + A++++R+ +G RY+E+F
Sbjct: 329 FNAANRPTGEAIVDFASHDEAKEAMKKDREKIGPRYIELF 368
>gi|351714130|gb|EHB17049.1| Epithelial splicing regulatory protein 2 [Heterocephalus glaber]
Length = 719
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 97/186 (52%), Gaps = 22/186 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 293 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFTDREQRDLALQR 352
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 353 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 396
Query: 175 LRGLPFSAGKDDIMDFF---KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 397 LRGLPFSAGPADVLSFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 456
Query: 232 DRMTLG 237
+ L
Sbjct: 457 HKGMLA 462
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F + E A+ +
Sbjct: 293 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFTDREQRDLALQR 352
Query: 232 DRMTLGSRYIELFPSSHEE 250
+ +G RYIE++ ++ EE
Sbjct: 353 HKHHMGVRYIEVYKATGEE 371
>gi|256090135|ref|XP_002581069.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353232933|emb|CCD80288.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 338
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLPF D+ FFH I + F N + GEAF L A+
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ Q++GRRY+EVF S + ++++ G P+ S R + +
Sbjct: 64 AHHNQHLGRRYIEVFDS--------CSEDLNNAMGCRPYHSSNRREH------------V 103
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLP+ K +I FF ++ + I + ++ GR TGEA+V+F ++E A K
Sbjct: 104 VRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKEKH 163
Query: 233 RMTLGSRYIELFPSSHEEMDEALSR 257
+G RYIE+F S+ E + + R
Sbjct: 164 MEKIGHRYIEIFESTMMEANMTIQR 188
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLP+D + ++ FF+GL+I L V + TGEA+ + A ++
Sbjct: 103 VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKEK 162
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEV 142
+ + +G RY+E+F S E I ++
Sbjct: 163 HMEKIGHRYIEIFESTMMEANMTIQRQM 190
>gi|224002324|ref|XP_002290834.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974256|gb|EED92586.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 387
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 63/91 (69%)
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
HTG +RLRGLPF A K DI+DFF+++ E S+ +T DGR TGE +V F +A+D+K
Sbjct: 293 GTHTGYVRLRGLPFQASKQDILDFFQEYNPIESSVLLTYRGDGRSTGEGYVAFKDADDAK 352
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
AMA R T+GSRYIELF S+ EE ++R
Sbjct: 353 EAMALHRSTIGSRYIELFISNKEEHARNVAR 383
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
PFP VR+RGLPF+ T DV FF GL ++DV+ V + +GEAF V P+ LQR
Sbjct: 90 PFPCVRVRGLPFEATLEDVLVFFQGLVVIDVVLV--PHAESGEAFVVFANPMDFQMGLQR 147
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGG 148
+ Q+MGRRY+EVF+ KR +YY AIA++ +GG
Sbjct: 148 DHQSMGRRYLEVFQGKRSDYYAAIASQNHHWQGG 181
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+R+RGLPF A +D++ FF+ V+ I + + +GEAFV FAN D + + +
Sbjct: 93 CVRVRGLPFEATLEDVLVFFQGLVV----IDVVLVPHAE-SGEAFVVFANPMDFQMGLQR 147
Query: 232 DRMTLGSRYIELF 244
D ++G RY+E+F
Sbjct: 148 DHQSMGRRYLEVF 160
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF ++ D+ +FF + ++ VL ++ + + TGE + A+ +
Sbjct: 299 VRLRGLPFQASKQDILDFFQEYNPIESSVLLTYRGDGRSTGEGYVAFKDADDAKEAMALH 358
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIA 139
R +G RY+E+F S ++E+ + +A
Sbjct: 359 RSTIGSRYIELFISNKEEHARNVA 382
>gi|358252891|dbj|GAA50442.1| epithelial splicing regulatory protein 1/2 [Clonorchis sinensis]
Length = 846
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 106/206 (51%), Gaps = 20/206 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ T++D+ FF GL+I + L + K + GEA Q D AL++
Sbjct: 410 VIRARGLPWQATDLDIFHFFSGLNISNGGISLVLSKIGRRNGEALIRFTDQEQRDLALRK 469
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG+RYVEV+ ++ +E+ E ++ + P + ++R
Sbjct: 470 HKHHMGQRYVEVYAAQGREFVAFAGAETTEAEEFLKKFTSP-------------YQALIR 516
Query: 175 LRGLPFSAGKDDIMDFFKD----FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+RGLP++ +++FF + E+ + +GR TG+AFV F N + A+
Sbjct: 517 MRGLPYATTVQQVLEFFSNTDCAVQFGEEGVLFVNRRNGRATGDAFVIFENQAIGEKALQ 576
Query: 231 KDRMTLGSRYIELFPSSHEEMDEALS 256
+G+RYIELF S+ E+++ ++
Sbjct: 577 NHWQHIGNRYIELFKSTPAEVNQVMN 602
>gi|256090133|ref|XP_002581068.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353232934|emb|CCD80289.1| putative heterogeneous nuclear ribonucleoprotein (hnrnp)
[Schistosoma mansoni]
Length = 386
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLPF D+ FFH I + F N + GEAF L A+
Sbjct: 4 VVRIRGLPFSANADDIISFFHDCRIRGGKRGIYFPQGSNGRSNGEAFIELESKDDKQKAM 63
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ Q++GRRY+EVF S + ++++ G P+ S R + +
Sbjct: 64 AHHNQHLGRRYIEVFDS--------CSEDLNNAMGCRPYHSSNRREH------------V 103
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLP+ K +I FF ++ + I + ++ GR TGEA+V+F ++E A K
Sbjct: 104 VRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKEKH 163
Query: 233 RMTLGSRYIELFPSSHEEMDEALSR 257
+G RYIE+F S+ E + + R
Sbjct: 164 MEKIGHRYIEIFESTMMEANMTIQR 188
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
+D+ + S H+ +R+RGLP+SA K+DI F L +I + N+ RPTGEA V+F
Sbjct: 288 YDDPQSSTGHS--VRMRGLPYSATKEDIDRFLSP--LQPVNIRMRFNAANRPTGEAIVDF 343
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A+ +++K AM KDR +G RYIELF +S
Sbjct: 344 ASHDEAKEAMKKDREKIGPRYIELFLAS 371
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLP+D + ++ FF+GL+I L V + TGEA+ + A ++
Sbjct: 103 VVRLRGLPYDTEKKEIFAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKEK 162
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEV 142
+ + +G RY+E+F S E I ++
Sbjct: 163 HMEKIGHRYIEIFESTMMEANMTIQRQM 190
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 30 FYGTPPSSSFMYNPPPAYGYVS-QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LF 87
F G PS + PP Y Y Q VR+RGLP+ T+ D+ F L V++ +
Sbjct: 269 FEGPSPSKGSNFGPPGHYEYDDPQSSTGHSVRMRGLPYSATKEDIDRFLSPLQPVNIRMR 328
Query: 88 VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
+ N+ TGEA + A++++R+ +G RY+E+F
Sbjct: 329 FNAANRPTGEAIVDFASHDEAKEAMKKDREKIGPRYIELF 368
>gi|195445396|ref|XP_002070305.1| GK11105 [Drosophila willistoni]
gi|194166390|gb|EDW81291.1| GK11105 [Drosophila willistoni]
Length = 642
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 110/213 (51%), Gaps = 33/213 (15%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCVLG 103
V + P F +RLRGLP+ T ++ +F +++ + ++ + K TGEA+ +
Sbjct: 49 VGESPKF--IRLRGLPWSATHKEILDFLENVNVTNGSQGIHLVTSRVDGKNTGEAYVEVA 106
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
V+ A + N+ +MG RY+EVF + +E +A+ R I G
Sbjct: 107 SQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------RKIG-------G 146
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD--GRPTGEAFVEFAN 221
+A +++LRGLP++ + I +FF + D I +D GR TGEAFV+F +
Sbjct: 147 HANAF---VVKLRGLPYAVTEQQIEEFFTGLEIKTDREGILFVTDRRGRATGEAFVQFES 203
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
+D++ A+ ++R +G RYIE+F SS EM A
Sbjct: 204 QDDTEQALGRNREKIGHRYIEIFRSSIAEMKRA 236
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 516 GNDIEYYT--IHMRGLPYTSFENDVFKFFEP--IRPANVRINYNKKGLHSGTADAYFDTY 571
Query: 223 EDSKAAMAKDRMTLGSRYIELF 244
EDS+ AM + R +GSRYIELF
Sbjct: 572 EDSQLAMKRHREQMGSRYIELF 593
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ + +RGLP+ E DV +FF + +V + +K +G A A++R
Sbjct: 521 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQLAMKR 580
Query: 115 NRQNMGRRYVEVF 127
+R+ MG RY+E+F
Sbjct: 581 HREQMGSRYIELF 593
>gi|428185861|gb|EKX54712.1| hypothetical protein GUITHDRAFT_57099, partial [Guillardia theta
CCMP2712]
Length = 203
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 9/203 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV--DVLFVH-KNNKFTGEAFCVLGYPLQVDFALQR 114
+VR+RGLPF E D+ EFF GL + + F ++ + TGEAF + + + AL
Sbjct: 1 IVRMRGLPFSVREEDIREFFSGLLVRPHGIFFTSSRDGRPTGEAFVIFERDDEGEKALSL 60
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDS------AV 168
+R++MG RYVEVF+S + + + A V V P P H A
Sbjct: 61 DRKHMGTRYVEVFKSNKPDLVRLCAGCVPAVAPSMPPSLPPSLPPHPHPHSHPMPGSLAA 120
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
++++RGLP+SA + D+ DFF + +++ N+ G +G+A+VE + E+ A
Sbjct: 121 KDLVVKVRGLPYSAKEADVFDFFCSSNVRPSGVNLIQNARGESSGDAYVELGSEEEVMRA 180
Query: 229 MAKDRMTLGSRYIELFPSSHEEM 251
+A R G RY+E+F +S E+
Sbjct: 181 LALHRSNFGHRYLEIFRTSRAEV 203
>gi|431912397|gb|ELK14531.1| Epithelial splicing regulatory protein 2 [Pteropus alecto]
Length = 698
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 97/186 (52%), Gaps = 22/186 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 272 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 331
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +E+ K + GG+ + R S ++ ILR
Sbjct: 332 HKHHMGVRYIEVYKATGEEFVK--------IAGGT-SLEVARFLSREDQV-------ILR 375
Query: 175 LRGLPFSAGKDDIMDFFK---DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
LRGLPFSAG D++ F D + + DGRPTG+AF FA E ++AA+ +
Sbjct: 376 LRGLPFSAGPADVLGFLGPECPVTGGADGLLFVRHPDGRPTGDAFALFACEELAQAALRR 435
Query: 232 DRMTLG 237
+ L
Sbjct: 436 HKGMLA 441
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 272 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 331
Query: 232 DRMTLGSRYIELFPSSHEE 250
+ +G RYIE++ ++ EE
Sbjct: 332 HKHHMGVRYIEVYKATGEE 350
>gi|340722803|ref|XP_003399791.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Bombus terrestris]
gi|350424200|ref|XP_003493719.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Bombus impatiens]
Length = 414
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 34/213 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ T ++ +FF I + + + + + +GEA+ + ++ A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSREGRPSGEAYVEMDTLEDIEKAC 73
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+R+R +MG RY+EVF++KR E + ++ ++A+ G
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKRSGMNL-------------------ENAMDDGC 114
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I FF + + I + + GR TGEA+V+F N + ++ A+ K
Sbjct: 115 VRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKH 174
Query: 233 RMTLGSR----------YIELFPSSHEEMDEAL 255
+ +G R YIE+F SS E+ ++
Sbjct: 175 KEKIGHRWGTDXLAGFGYIEIFRSSLSEVRASI 207
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S D+IM FF D ++ ++ +H+TM+ +GRP+GEA+VE ED + A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSREGRPSGEAYVEMDTLEDIEKAC 73
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
+DR +G RYIE+F + EM+ + R
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKR 101
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
R G +S +H+ + +RGLPF A + DI DFF+ + ++ I + + GRP+GEA
Sbjct: 282 RGSGDTWGGNSGIHS--IHMRGLPFKATEQDIADFFRP--IEPVNVRIILENGGRPSGEA 337
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELF 244
VEFA E++ AM+KD+ + RYIELF
Sbjct: 338 DVEFATHEEAVKAMSKDKSHMSHRYIELF 366
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLPF TE D+A+FF ++ V+V + +N + +GEA + A+ +++
Sbjct: 297 IHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEFATHEEAVKAMSKDKS 356
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 357 HMSHRYIELF 366
>gi|256087258|ref|XP_002579790.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350644185|emb|CCD61054.1| heterogeneous nuclear ribonucleoprotein-related [Schistosoma
mansoni]
Length = 1009
Score = 99.0 bits (245), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/206 (29%), Positives = 108/206 (52%), Gaps = 20/206 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ T++++ +FF G++I L + K + GEA Q AL++
Sbjct: 375 VVRARGLPWQATDLEIFQFFSGINIAKGGISLVLSKIGRRNGEALIQFADAEQQSLALRK 434
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G+RY+EV Y A ++ + GG ++ + GK + + ++R
Sbjct: 435 HKHHVGKRYIEV--------YAATGSDFISIAGGESQEAM-----NFLGKLTTPNQTLIR 481
Query: 175 LRGLPFSAGKDDIMDFF----KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+RGLP++ + I+ F K + + I DGR TG+AFV F ++ A+
Sbjct: 482 MRGLPYTTTPEQIVRFLCILIKIVQFNANGILFVNKPDGRATGDAFVIFETKIVAEKALE 541
Query: 231 KDRMTLGSRYIELFPSSHEEMDEALS 256
++ +GSRYIELF S+ E+++ ++
Sbjct: 542 NNKQHIGSRYIELFKSTPAEVNQVMN 567
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGL-DIVD-----VLFVHK-NNKFTGEAFCVLGYPL 106
P ++R+RGLP+ T + F L IV +LFV+K + + TG+AF + +
Sbjct: 475 PNQTLIRMRGLPYTTTPEQIVRFLCILIKIVQFNANGILFVNKPDGRATGDAFVIFETKI 534
Query: 107 QVDFALQRNRQNMGRRYVEVFRSKRQE 133
+ AL+ N+Q++G RY+E+F+S E
Sbjct: 535 VAEKALENNKQHIGSRYIELFKSTPAE 561
>gi|380029403|ref|XP_003698363.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Apis florea]
Length = 413
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 34/213 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ T ++ +FF I + + + + + +GEA+ + ++ A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSREGRPSGEAYVEMDTLEDIEKAC 73
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+R+R +MG RY+EVF++KR E + ++ ++A+ G
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKRSGMNL-------------------ENAMDDGC 114
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I FF + + I + + GR TGEA+V+F N + ++ A+ K
Sbjct: 115 VRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKH 174
Query: 233 RMTLGSR----------YIELFPSSHEEMDEAL 255
+ +G R YIE+F SS E+ ++
Sbjct: 175 KEKIGHRWGTDXLAGFGYIEIFRSSLSEVRASI 207
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S D+IM FF D ++ ++ +H+TM+ +GRP+GEA+VE ED + A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSITNGKNGVHMTMSREGRPSGEAYVEMDTLEDIEKAC 73
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
+DR +G RYIE+F + EM+ + R
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKR 101
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
R G +S +H+ + +RGLPF A + DI DFF+ + ++ I + + GRP+GEA
Sbjct: 281 RGSGDTWGGNSGIHS--IHMRGLPFKATEQDIADFFRP--IEPVNVRIILENGGRPSGEA 336
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELF 244
VEFA E++ AM+KD+ + RYIELF
Sbjct: 337 DVEFATHEEAVKAMSKDKSHMSHRYIELF 365
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++A+FF GL+I+ L + TGEA+ + ALQ+
Sbjct: 114 CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQK 173
Query: 115 NRQNMGRR----------YVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP 155
+++ +G R Y+E+FRS E +I ++ GG R P
Sbjct: 174 HKEKIGHRWGTDXLAGFGYIEIFRSSLSEVRASIGPKMRGPMGGFNQRPAP 224
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLPF TE D+A+FF ++ V+V + +N + +GEA + A+ +++
Sbjct: 296 IHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEFATHEEAVKAMSKDKS 355
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 356 HMSHRYIELF 365
>gi|312065923|ref|XP_003136024.1| heterogeneous nuclear ribonucleoprotein H [Loa loa]
Length = 383
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 114/218 (52%), Gaps = 30/218 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--HGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+++ RGLP+ CTE D+ EFF I + L ++ + +GE + V DFAL +
Sbjct: 7 IMKCRGLPWSCTEDDLREFFGEAARSITQIKLTKDRDGRASGEGYVVFSSREDYDFALTK 66
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+++ +G+RYVE+ + +++ SD G P A + G++ T I+R
Sbjct: 67 DKKYIGKRYVEL---------QQVSSMESDYDDGDRRYGGPVADPNLPGRE----TSIVR 113
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDR 233
L GLP+ K++I+ FF+ +++ I +T + G+P GEAFV F + + + A+AK++
Sbjct: 114 LGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFTDEDSASKALAKNK 173
Query: 234 MTL-------------GSRYIELFPSSHEEMDEALSRG 258
+ RY++++PSS+ EM AL G
Sbjct: 174 EYIQHRYCSLTVYHISSLRYVDIYPSSYGEMLRALDGG 211
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+R+RGLP+ A + DI+DFF+ + + +D RP+GEA VEF N D AAM +
Sbjct: 309 CIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGTD-RPSGEAIVEFRNRADFDAAMQR 367
Query: 232 DRMTLGSRYIELFP 245
+R +GSRY+EL P
Sbjct: 368 NRNYMGSRYVELIP 381
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 34 PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLD--IVDVLFVHKN 91
PP PP Y + PP + +R+RGLP+ TE D+ +FF L +DVL+ +
Sbjct: 286 PPMGGHRGYSPPRRRYTTPPPEY-CIRMRGLPYRATERDIIDFFQPLRPASIDVLYEYGT 344
Query: 92 NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127
++ +GEA D A+QRNR MG RYVE+
Sbjct: 345 DRPSGEAIVEFRNRADFDAAMQRNRNYMGSRYVELI 380
>gi|383858866|ref|XP_003704920.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Megachile rotundata]
Length = 412
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 107/213 (50%), Gaps = 34/213 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
VV+LRGLP+ T ++ +FF I + + + + + +GEA+ + P ++ A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+R+R +MG RY+EVF++KR E + ++ ++A+
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKRSGFNL-------------------ENAMDDAC 114
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I FF + + I + + GR TGEA+V+F N + ++ A+ K
Sbjct: 115 VRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKH 174
Query: 233 RMTLGSR----------YIELFPSSHEEMDEAL 255
+ +G R YIE+F S+ E+ ++
Sbjct: 175 KEKIGHRWGTDXLAGFGYIEIFRSTLSEVRASI 207
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 111/254 (43%), Gaps = 71/254 (27%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++A+FF GL+I+ L + TGEA+ + ALQ+
Sbjct: 114 CVRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQK 173
Query: 115 NRQNMGRR----------YVEVFRSKRQEYYKAIA------------------------- 139
+++ +G R Y+E+FRS E +I
Sbjct: 174 HKEKIGHRWGTDXLAGFGYIEIFRSTLSEVRASIGPKMRGPMGGFNQRPAPYDRGARFGG 233
Query: 140 -NEVSDVRGGSPHRSIP----------------------------RAKSHDEGKDSAVHT 170
N S+ GS +R R G S +H+
Sbjct: 234 MNRFSNNGRGSRNRDFDGGPWGGNNFDSRGGGMGMRGGMDMKGNFRGNGDAWGGGSGIHS 293
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+ +RGLPF A + DI DFF+ + ++ I + + GRP+GEA VEFA E++ AM+
Sbjct: 294 --IHMRGLPFKATEQDIADFFRP--IEPVNVRIILENGGRPSGEADVEFATHEEAMKAMS 349
Query: 231 KDRMTLGSRYIELF 244
KD+ + RYIELF
Sbjct: 350 KDKSHMSHRYIELF 363
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S D+IM FF D +S ++ +H+TM+ +GRP+GEA+VE ED + A
Sbjct: 14 VVKLRGLPWSTTVDEIMKFFSDCSISNGKNGVHMTMSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
+DR +G RYIE+F + EM+ + R
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKR 101
>gi|402589318|gb|EJW83250.1| hypothetical protein WUBG_05840 [Wuchereria bancrofti]
Length = 451
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 110/247 (44%), Gaps = 59/247 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNR 116
VVRLRG+PF T DV EFF GL++ DV+ + + +GEAF + AL+RNR
Sbjct: 65 VVRLRGIPFSATNDDVKEFFSGLEVADVVIDKELGGRPSGEAFVRFASKQHAEMALERNR 124
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEV---SDVRGGSPHRSIPRAKSH------------- 160
NMG RYVEVFRS E K+ + + +R + RS P ++
Sbjct: 125 NNMGSRYVEVFRSSGDELEKSREGHIAPPTSLRSLAVERSFPTPRTEPIPLRFAAAKLGG 184
Query: 161 ------DEGKDSAVHTGILRLRGLPFSA-----------GKDD----------------- 186
+E + + R R P+ A G +D
Sbjct: 185 VRPYRREEYGGPLRNVSMGRPRAGPYDAPYSRYARFQDYGYEDDFDCDDPAKIYMRGLPY 244
Query: 187 ------IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240
I DFFK E I + N D RP+G+A V F +++ AM++++ +G+RY
Sbjct: 245 SANALDIEDFFKPLNCVE--IQLGFNEDRRPSGDACVIFGTVGEARDAMSRNKQCIGNRY 302
Query: 241 IELFPSS 247
IELF ++
Sbjct: 303 IELFTAA 309
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 19/162 (11%)
Query: 93 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 152
+ +GE + L + A + ++Q M RY+EVF S+V + H
Sbjct: 3 RASGECYVELVDKAAAEEAKRFDKQEMNNRYIEVFNVTE-----------SEVVWMTRHN 51
Query: 153 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 212
I + G + ++RLRG+PFSA DD+ +FF +++ + I GRP+
Sbjct: 52 VIRK------GDQETPYNFVVRLRGIPFSATNDDVKEFFSGLEVAD--VVIDKELGGRPS 103
Query: 213 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
GEAFV FA+ + ++ A+ ++R +GSRY+E+F SS +E++++
Sbjct: 104 GEAFVRFASKQHAEMALERNRNNMGSRYVEVFRSSGDELEKS 145
>gi|351707744|gb|EHB10663.1| G-rich sequence factor 1 [Heterocephalus glaber]
Length = 455
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 121/261 (46%), Gaps = 74/261 (28%)
Query: 58 VVRLRGLPFDCTEVDVAEFF------------------------------HGLDIVDVLF 87
VVRLRGLP+ C+E D+ +FF GL+IVD+ F
Sbjct: 193 VVRLRGLPYSCSEKDIVDFFAGAQQFDHIWGITSPMSSFLIVLLYLRSVPTGLNIVDITF 252
Query: 88 V--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA------ 139
V ++ + TGEA+ P AL ++R+ +G RY+E+F S+R E +
Sbjct: 253 VMDYRGRRKTGEAYVQFEEPEMASQALMKHREEIGNRYIEIFPSRRNEVRTHVGSHKGRK 312
Query: 140 -------------------NEVS-DVRGGSPHRS-----IPRA------KSHDEGKDSAV 168
+EV+ D+R + + +P+ ++ D G ++
Sbjct: 313 VVSSPTAKCITEPDVVFEEHEVNEDIRPMTTFENEKEIELPKEVLEKVPEAADLGAMPSL 372
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSK 226
H ++ +RGLPF A DI++ F + + ITM +S G+ TGEA V F + ED+
Sbjct: 373 H--VVHMRGLPFQANAQDIINVCA-FFMPLRPVRITMEYSSSGKATGEAHVHFGSHEDAV 429
Query: 227 AAMAKDRMTLGSRYIELFPSS 247
AAM KDR + RYIELF +S
Sbjct: 430 AAMLKDRSHVHHRYIELFLNS 450
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 102/228 (44%), Gaps = 53/228 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 93 LIRAQGLPWSCTVEDVLNFFQDCKIRNSEKGIHFLLNRDGKRRGDALIEMESERDVQKAL 152
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R MG+RYVEV+ I NE D KS V+ G+
Sbjct: 153 EKHRLYMGQRYVEVYE---------INNEDVDAL----------MKSLQVKASPLVNDGV 193
Query: 173 LRLRGLPFSAGKDDIMDFFK-----DFVLSEDS-----------------------IHIT 204
+RLRGLP+S + DI+DFF D + S I
Sbjct: 194 VRLRGLPYSCSEKDIVDFFAGAQQFDHIWGITSPMSSFLIVLLYLRSVPTGLNIVDITFV 253
Query: 205 MNSDG-RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M+ G R TGEA+V+F E + A+ K R +G+RYIE+FPS E+
Sbjct: 254 MDYRGRRKTGEAYVQFEEPEMASQALMKHREEIGNRYIEIFPSRRNEV 301
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF+D + SE IH +N DG+ G+A +E + D + A+
Sbjct: 93 LIRAQGLPWSCTVEDVLNFFQDCKIRNSEKGIHFLLNRDGKRRGDALIEMESERDVQKAL 152
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K R+ +G RY+E++ ++E++D
Sbjct: 153 EKHRLYMGQRYVEVYEINNEDVD 175
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 54 PPFPVVRLRGLPFDCTE---VDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVD 109
P VV +RGLPF ++V FF L V + + ++ K TGEA G
Sbjct: 370 PSLHVVHMRGLPFQANAQDIINVCAFFMPLRPVRITMEYSSSGKATGEAHVHFGSHEDAV 429
Query: 110 FALQRNRQNMGRRYVEVF 127
A+ ++R ++ RY+E+F
Sbjct: 430 AAMLKDRSHVHHRYIELF 447
>gi|340386110|ref|XP_003391551.1| PREDICTED: epithelial splicing regulatory protein 1-like, partial
[Amphimedon queenslandica]
Length = 541
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 106/206 (51%), Gaps = 29/206 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF D+A F GL+I+ V ++ + TGEA VL Q FALQR
Sbjct: 173 VVRLRGLPFSADHNDIALFLSGLNIIPGGVVFSINPVGRRTGEAIVVLEGEDQAQFALQR 232
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+R + +RYVEV+ + ++ + D G S V T +R
Sbjct: 233 DRHYLHQRYVEVYEASPDNFF-----QFCDTTGSS----------------EKVFT--VR 269
Query: 175 LRGLPFSAGKDDIMDFFKDF--VLSE-DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++GLP+ A + DIM+FF+ V +E D I I DG+ +G+AF F++ + A+ K
Sbjct: 270 MQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSEAHVEEALKK 329
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
R L RYIE+F SS +E L++
Sbjct: 330 HRNNLMGRYIEVFHSSLKEFLVVLNK 355
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 34/226 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
VR++GLP+ TE D+ EFF V +L V + + K +G+AF V V+ A
Sbjct: 267 TVRMQGLPYRATESDIMEFFQPEAPVSNEADGILIVRYPDGKASGDAFAVFSSEAHVEEA 326
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV--- 168
L+++R N+ RY+EVF S +E+ + + G+P + A + E
Sbjct: 327 LKKHRNNLMGRYIEVFHSSLKEFLVVLN------KSGTPEQLDRFAYLNTESGGGGGGGR 380
Query: 169 ----------------HTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGR 210
++LRGLP+ A +D++ FF D + + IH+ +N+ R
Sbjct: 381 GGGGGSGGGASKRGGSEKNCVKLRGLPWEATPEDVISFFGDLNRSIEQQGIHMVLNAQSR 440
Query: 211 PTGEAFVEFANAE-DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
PTG+ FV+ + + ++AA R +G RYIE+F S ++ AL
Sbjct: 441 PTGDCFVQMTSVDAATRAANELHRQNIGRRYIEVFQVSGNDVTYAL 486
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 14/146 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVH----KNNKFTGEAFCVLGYPLQVDFAL 112
V+LRGLP++ T DV FF L+ ++ +H ++ TG+ F + VD A
Sbjct: 400 CVKLRGLPWEATPEDVISFFGDLNRSIEQQGIHMVLNAQSRPTGDCFVQM---TSVDAAT 456
Query: 113 ----QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
+ +RQN+GRRY+EVF+ + A+ + + G P K V
Sbjct: 457 RAANELHRQNIGRRYIEVFQVSGNDVTYALMD--TGGGGSRPGGGHAYYGGGGGNKRKKV 514
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF 194
+ +++ RGLPF+ + D++DFF DF
Sbjct: 515 SSAVVKARGLPFNTKEYDLVDFFADF 540
>gi|226487870|emb|CAX75600.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 278
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 25/205 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLPF D+ FF I + F N + GEAF L + A+
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ ++MGRRY+EVF S +E A+ GS S P + H +
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAM---------GSRPFSSPNRREH-----------V 103
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLP+ K +I FF ++ + I + ++ GR TGEA+V+F ++E A K
Sbjct: 104 VRLRGLPYDTEKKEIYAFFNGLEIAPNGIGLLVDHMGRCTGEAYVQFTSSESLARAKEKH 163
Query: 233 RMTLGSRYIELFPSSHEEMDEALSR 257
+G RYIE+F S+ E + + R
Sbjct: 164 MEKIGHRYIEIFESTMLEANITIQR 188
>gi|395735012|ref|XP_002814888.2| PREDICTED: G-rich sequence factor 1 [Pongo abelii]
Length = 459
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 107/217 (49%), Gaps = 41/217 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVRLRGLP+ C E D+ +FF GL+IVD+ FV ++ + TGEA+ V + +
Sbjct: 252 VVRLRGLPYSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAY--------VYIEIFPS 303
Query: 116 RQNMGRRYVEVFRSKRQEYYKA---------------IANEVSDVRGGSPHRSIPRAK-- 158
R+N R +V ++ K+ + + ++ + + I K
Sbjct: 304 RRNEVRTHVGSYKGKKIASFPTAKYITEPEMVFEEHEVNEDIQPMTAFESEKEIELPKEV 363
Query: 159 ------SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGR 210
+ D G S++H + +RGLPF A DI++FF + ITM +S G+
Sbjct: 364 PEKLPEAADFGATSSLH--FVHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGK 417
Query: 211 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
TGEA V F ED+ AAM KDR + RYIELF +S
Sbjct: 418 ATGEADVHFETHEDAVAAMHKDRSHVYHRYIELFLNS 454
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 98/234 (41%), Gaps = 56/234 (23%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFP-------VVRLRGLPFDCTEVDVAEFFHGLDIV 83
Y ++++ + PP Y P ++R +GLP+ CT DV FF I
Sbjct: 118 YSQESKTTYLEDLPPPPEYELAPSKLEEEVDDVFLIRAQGLPWSCTVEDVLNFFSDCRIR 177
Query: 84 D-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAI 138
++++ K G+A + V AL+++R MG+RYVEV+ I
Sbjct: 178 KGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE---------I 228
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
NE D KS V+ G++RLRGLP+S + DI+DFF + +
Sbjct: 229 NNEDVDAL----------MKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD 278
Query: 199 DSIHITMNSDG-RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I M+ G R TGEA+V YIE+FPS E+
Sbjct: 279 --ITFVMDYRGRRKTGEAYV----------------------YIEIFPSRRNEV 308
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 152 LIRAQGLPWSCTVEDVLNFFSDCRIRKGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 211
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 212 EKHRMYMGQRYVEVYEINNEDVD 234
>gi|390363422|ref|XP_003730367.1| PREDICTED: uncharacterized protein LOC100888204 [Strongylocentrotus
purpuratus]
Length = 1832
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 110/206 (53%), Gaps = 12/206 (5%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHKNNK--FTGEAFCVLGYPLQVDFAL 112
F VRL GLPFDCT+ V F ++I D + +H++++ TG A L P +D AL
Sbjct: 582 FYAVRLTGLPFDCTDRGVRLFLRDINIAPDGVQIHRDHRGRITGTANIKLQGPSDIDQAL 641
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT-- 170
+R++Q MG+RY++V + E+ K +VS S S R++S G++S +
Sbjct: 642 KRHQQYMGKRYIDVRPCLQSEWEKE--KQVS-----SAEPSKRRSRSPVRGRNSPLRNCN 694
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+ +RGL DI+DFF+ + +DSI++ N DG +G A++EF + + ++ A
Sbjct: 695 TCIEMRGLASFTKNSDIVDFFEGLAMRQDSIYLDPNKDGSGSGIAYLEFIDPDMARRACQ 754
Query: 231 KDRMTLGSRYIELFPSSHEEMDEALS 256
K+ R + + S E MD ++
Sbjct: 755 KNGRQFNRRTVSIRIISKEIMDAKIT 780
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
ILRL+GLP++A DI F+ + + +HI G G+ F+ F + ED++ AM +
Sbjct: 3 ILRLQGLPWTATAKDIRQHFEGLSIPDGGVHII----GGEEGDVFIAFGSDEDARKAMQR 58
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ L I L SS EM E ++ R
Sbjct: 59 QKQPLNGGRIMLLLSSKSEMQEVIAESR 86
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
P + D G V +R +P+SA DI FF + IHI +NS+G+PTG
Sbjct: 1479 PHGRPEDAGTSEYV---CAHIRNVPYSARWPDIAHFFSGLQIVPGGIHIMVNSEGKPTGH 1535
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
F+EFA+A +++ + + R +++ S M AL
Sbjct: 1536 CFIEFADAHNARLTEERRLHPMRDRPLQINACSKAMMIRAL 1576
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
++RL+GLP+ T D+ + F GL I D VH G+ F G A+QR +Q
Sbjct: 3 ILRLQGLPWTATAKDIRQHFEGLSIPDG-GVHIIGGEEGDVFIAFGSDEDARKAMQRQKQ 61
Query: 118 NMGRRYVEVFRSKRQEYYKAIA 139
+ + + S + E + IA
Sbjct: 62 PLNGGRIMLLLSSKSEMQEVIA 83
>gi|268565477|ref|XP_002639457.1| C. briggsae CBR-HRPF-1 protein [Caenorhabditis briggsae]
Length = 556
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 97/198 (48%), Gaps = 12/198 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
V+ RGLP++ TE D+ +FF I + +N + +G+A AL+++R++
Sbjct: 7 VQCRGLPWEATEQDLRDFFGNNGIASLDIPIRNGRTSGDATVTFTNEDDYRQALKKDREH 66
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-----IL 173
+G RY+EVF + N+ RGG P PR + D G S TG I+
Sbjct: 67 LGSRYIEVFPMDEPPRRRGDRNDFR-PRGGGP----PRDRFSDRG--SGQRTGPSTDPIV 119
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
RLRGLPFS DI DF + D I + R GEA+V F + E + A +
Sbjct: 120 RLRGLPFSVTIRDINDFLAPLPIVRDGILLPDQQRARIAGEAYVVFDSLESVQIAKQRHM 179
Query: 234 MTLGSRYIELFPSSHEEM 251
+G RYIE+F ++ E+
Sbjct: 180 KNIGHRYIEVFEATQREL 197
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGY 104
G + P P+VRLRGLPF T D+ +F L IV +L + + GEA+ V
Sbjct: 108 GQRTGPSTDPIVRLRGLPFSVTIRDINDFLAPLPIVRDGILLPDQQRARIAGEAYVVFDS 167
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQE 133
V A QR+ +N+G RY+EVF + ++E
Sbjct: 168 LESVQIAKQRHMKNIGHRYIEVFEATQRE 196
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD-GRPTGEAFVEFANAEDSKAAMA 230
+LR+RG+PF A + D+ +FF + + + + +S RP+G+A V F + +D A+
Sbjct: 479 VLRMRGVPFRATETDVYEFF--HPIRPNQVELIRDSQYQRPSGDARVIFYSRKDYDDALM 536
Query: 231 KDRMTLGSRYIELFPSS 247
KD+ +G RYIE+ P +
Sbjct: 537 KDKQYMGERYIEMIPDN 553
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V+R+RG+PF TE DV EFFH + + V+++ + + +G+A + D AL ++
Sbjct: 479 VLRMRGVPFRATETDVYEFFHPIRPNQVELIRDSQYQRPSGDARVIFYSRKDYDDALMKD 538
Query: 116 RQNMGRRYVEVF 127
+Q MG RY+E+
Sbjct: 539 KQYMGERYIEMI 550
>gi|146197828|dbj|BAF57627.1| hnRNP F protein [Dugesia japonica]
Length = 344
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 103/201 (51%), Gaps = 30/201 (14%)
Query: 62 RGLPFDCTEVDVAEFFHGLDIVD----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
RGLP+ TE D+ F +GL I + ++ ++ + + +GEA L + ++ N +
Sbjct: 5 RGLPYSATETDILTFLNGLPIWNESGILITLNDDGRPSGEALVKLDNEIGLNDLRDYNGK 64
Query: 118 NMGRRYVEVFRSKRQEYY-KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
MG R++EVF + +++++ + + ++SD+ +RLR
Sbjct: 65 YMGTRFIEVFPATQKDWFGEEMRMKLSDM-------------------------TYVRLR 99
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLP+ K+DI FF ++S D + + D PTGEAFV+F ED+ A+ + +
Sbjct: 100 GLPYDVTKEDIFIFFSRLMISRDGVGLLYGPDDVPTGEAFVQFMTREDANLALQRHNQCI 159
Query: 237 GSRYIELFPSSHEEMDEALSR 257
SRYIE++ SS E+ A+ +
Sbjct: 160 RSRYIEIYKSSLTEVYRAMEK 180
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 112/252 (44%), Gaps = 64/252 (25%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL----DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLP+D T+ D+ FF L D V +L+ ++ TGEAF + ALQR
Sbjct: 96 VRLRGLPYDVTKEDIFIFFSRLMISRDGVGLLY-GPDDVPTGEAFVQFMTREDANLALQR 154
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVS----DVRGGSPHR------------------ 152
+ Q + RY+E+++S E Y+A+ + ++ S HR
Sbjct: 155 HNQCIRSRYIEIYKSSLTEVYRAMEKQYEINREEILRRSRHRPANFPPKFNADPYSHVNS 214
Query: 153 ------SIPRAKSHDE----------------GKDSAVHTGI-------------LRLRG 177
S P+ KS GK+S + + +RG
Sbjct: 215 YYTDGYSFPQNKSSQGPMRRSRESKNRSNPYGGKNSHSSVKVETQNFGEFLGPLSIHMRG 274
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
LP++A + D+ +FF ++E + I + DG+ TGEA +F + D+ AM KDR +
Sbjct: 275 LPYTATEKDVHEFFAPLRVAE--VKIQLGPDGKNTGEAEADFYSENDAVKAMEKDRCKMS 332
Query: 238 SRYIELFPSSHE 249
RYIELF S +
Sbjct: 333 WRYIELFRGSSD 344
>gi|170577075|ref|XP_001893871.1| RNA binding protein [Brugia malayi]
gi|158599846|gb|EDP37285.1| RNA binding protein, putative [Brugia malayi]
Length = 519
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 40/197 (20%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNRQ 117
+RLRGLPF E DV F GL++ V F + + +GE + L + + A + ++Q
Sbjct: 56 IRLRGLPFSAKEDDVRAFLEGLEVKSVTFTLTSMGRASGECYVELVDKVAAEEAKRFDKQ 115
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
M RY+E G + ++RLRG
Sbjct: 116 EMNNRYIE-------------------------------------GDQDTPYNFVVRLRG 138
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
+PFSA +D+ +FF +++ + I GRP+GEAFV FA+ + ++ A+ ++R +G
Sbjct: 139 IPFSATNNDVKEFFSGLEVAD--VVIDKELGGRPSGEAFVRFASKQHAEMALERNRNNMG 196
Query: 238 SRYIELFPSSHEEMDEA 254
SRY+E+F SS +E++++
Sbjct: 197 SRYVEVFRSSGDELEKS 213
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 109/247 (44%), Gaps = 59/247 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNR 116
VVRLRG+PF T DV EFF GL++ DV+ + + +GEAF + AL+RNR
Sbjct: 133 VVRLRGIPFSATNNDVKEFFSGLEVADVVIDKELGGRPSGEAFVRFASKQHAEMALERNR 192
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEV---SDVRGGSPHRSIPRAKSH------------- 160
NMG RYVEVFRS E K+ V + +R + RS P ++
Sbjct: 193 NNMGSRYVEVFRSSGDELEKSREGHVVPPTSLRSLAVERSFPTPRTEPIPLRFAAAKLGG 252
Query: 161 ------DEGKDSAVHTGILRLRGLPFSA-----------GKDDIMD-------------- 189
+E + + R R P+ A G +D D
Sbjct: 253 VRPYRREEYGGPLRNVSMGRPRAGPYDAPYSRYARFQDYGYEDDFDCDDPAKIYMRGLPY 312
Query: 190 ---------FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240
FFK E I + N D RP+G+A V F +++ AM++++ +G+RY
Sbjct: 313 SANALDIEDFFKPLNCVE--IQLGFNEDRRPSGDACVIFGTVGEARDAMSRNKQCIGNRY 370
Query: 241 IELFPSS 247
IELF ++
Sbjct: 371 IELFTAA 377
>gi|46195836|ref|NP_996869.1| RNA-binding protein 12 [Gallus gallus]
gi|37932175|gb|AAP69823.1| SWAN ribonucleoprotein [Gallus gallus]
Length = 887
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 35/228 (15%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN--KFTGEAFCVLGYPL 106
P P+ V + G+PF TE DV EFF GL VD + + K++ + G P
Sbjct: 296 PIPINPDDLYVSIHGMPFSATESDVKEFFLGLR-VDAIHMLKDHVGRNNGNGLVKFFSPQ 354
Query: 107 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-----------------IANEVSDVRGGS 149
AL+RNR M +RYVEV + +++ A R S
Sbjct: 355 DTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQTMGPSGQPHPPPPQPHFRSKS 414
Query: 150 PH-RSIPRAKS-HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207
P + R++S H++G + L+GLPF + ++DFFK + EDSI+I
Sbjct: 415 PSGQKRSRSRSPHEQGF-------CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGP 467
Query: 208 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+G+ GE FVEF N D KAA+ + +G+R+I++ P + + M E +
Sbjct: 468 NGKAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITKKAMLEKI 515
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 16/202 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K GE F AL
Sbjct: 432 CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCH 491
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----GSPHRSIPRAKSHDEGKDSAVH 169
++Q +G R+++V + KA+ ++ +R R I + G
Sbjct: 492 HKQYIGNRFIQVHPITK----KAMLEKIDLIRKRLQNFNYDQREIIMNAEAESGSPKLC- 546
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+ +P++ K +I+ F + + E+S+ I ++++G+ G+A V+F +D++ A
Sbjct: 547 ---AHISNIPYNITKMEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAEDDARKAE 603
Query: 230 AKDRMTLGSRYIELFPSSHEEM 251
R L R + L + EEM
Sbjct: 604 RLHRKKLNGRDVVLRLITVEEM 625
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 805 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVV 863
>gi|403301377|ref|XP_003941367.1| PREDICTED: G-rich sequence factor 1-like [Saimiri boliviensis
boliviensis]
Length = 291
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 101/225 (44%), Gaps = 43/225 (19%)
Query: 62 RGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNM 119
RGLP+ C + D+ +FF GL+ V + FV ++ + TGEA+ P + AL ++R+ +
Sbjct: 59 RGLPYSCNKKDIVDFFAGLNTVAITFVMDYRGRQKTGEAYVQFEEPEMANQALLKHREEI 118
Query: 120 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSP----------------------------- 150
G RY+E+F S+R E + + SP
Sbjct: 119 GNRYIEIFPSRRNEGRTHVCSHKGKKMASSPTAKYITEPEMVFEEHEVNEDIRSMAAFES 178
Query: 151 HRSIPRAKSHDEGKDSAVHTGI------LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
+ I + E AV G + +RGLPF A DI++FF + IT
Sbjct: 179 EKEIELPQEMPEKLPEAVDFGTTPCLYFVHMRGLPFQANAQDIINFFAPL----KPVRIT 234
Query: 205 M--NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
M +S + TGEA V F ED+ A M KD + RYIELF SS
Sbjct: 235 MEYSSSRKATGEAEVHFEIHEDAVAVMLKDWSHVHHRYIELFLSS 279
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR-PTGEAFVEFANAEDSKAAMAKDRM 234
RGLP+S K DI+DFF L+ +I M+ GR TGEA+V+F E + A+ K R
Sbjct: 59 RGLPYSCNKKDIVDFFAG--LNTVAITFVMDYRGRQKTGEAYVQFEEPEMANQALLKHRE 116
Query: 235 TLGSRYIELFPSSHEE 250
+G+RYIE+FPS E
Sbjct: 117 EIGNRYIEIFPSRRNE 132
>gi|393910110|gb|EJD75743.1| RNA recognition domain-containing protein [Loa loa]
Length = 674
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 104/218 (47%), Gaps = 33/218 (15%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFH---------------GLDIVDVLF-VHKNNKFTGE 97
P +RLRGLPF E DV +F GL+ + F + N + +GE
Sbjct: 3 PDTNYIRLRGLPFAAKEQDVRDFLQDISIWFLRYRSFFLFGLNAKSITFTLTSNGRASGE 62
Query: 98 AFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRA 157
+ L V A + +R + RY+EVF E I + V GG
Sbjct: 63 CYVELDDQEAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKGSGGDA------- 115
Query: 158 KSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
DS + ++RLRGLP+SA DDI +FF ++ D++ I GRP+GEAF
Sbjct: 116 -------DSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVA-DAV-IDKEPGGRPSGEAF 166
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
V A E ++ A+ + + +GSRY+E+F SS +EMD +
Sbjct: 167 VRLATKEYAELALERSKNYMGSRYVEVFRSSADEMDNS 204
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 106/233 (45%), Gaps = 53/233 (22%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
VVRLRGLP+ T D+ EFF GL++ D V+ + +GEAF L + AL+R++
Sbjct: 124 VVRLRGLPYSATIDDIKEFFSGLEVADAVIDKEPGGRPSGEAFVRLATKEYAELALERSK 183
Query: 117 QNMGRRYVEVFRSKRQE----YYKA--IANEVSD---VRGGSPHRSI------------- 154
MG RYVEVFRS E YY A I S +RG SP
Sbjct: 184 NYMGSRYVEVFRSSADEMDNSYYAARGIPPPTSGPVPLRGISPTLDFRFRDRYADYGRYG 243
Query: 155 ---------PRAKSHDEGK-----------------DSAVHTGILR--LRGLPFSAGKDD 186
PR +D D A++ ++ +RGLP+S D
Sbjct: 244 GPIRLSSLHPRPSPYDRPYYDRDRYYRCGARYDPEFDEAMYDPTVKVFMRGLPYSVTTLD 303
Query: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 239
I +FF+ E I + N + R +G+A V F+ +++ A+++++ +G+R
Sbjct: 304 IEEFFRPLNCVE--IKLGYNEERRLSGDALVSFSTMAEAREALSRNKNNMGTR 354
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
P V +RGLP+ T +D+ EFF L+ V++ L ++ + +G+A + AL
Sbjct: 286 PTVKVFMRGLPYSVTTLDIEEFFRPLNCVEIKLGYNEERRLSGDALVSFSTMAEAREALS 345
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAI 138
RN+ NMG R + R++ E K +
Sbjct: 346 RNKNNMGTRIKKRKRTRISEGTKML 370
>gi|363741413|ref|XP_003642489.1| PREDICTED: RNA-binding protein 12-like [Gallus gallus]
Length = 880
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 35/228 (15%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN--KFTGEAFCVLGYPL 106
P P+ V + G+PF TE DV EFF GL VD + + K++ + G P
Sbjct: 296 PIPINPDDLYVSIHGMPFSATESDVKEFFLGLR-VDAIHMLKDHVGRNNGNGLVKFFSPQ 354
Query: 107 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-----------------IANEVSDVRGGS 149
AL+RNR M +RYVEV + +++ A R S
Sbjct: 355 DTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQTMGPSGQPHPPPPQPHSRSKS 414
Query: 150 PH-RSIPRAKS-HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207
P + R++S H++G + L+GLPF + ++DFFK + EDSI+I
Sbjct: 415 PSGQKRSRSRSPHEQGF-------CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGP 467
Query: 208 DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+G+ GE FVEF N D KAA+ + +G+R+I++ P + + M E +
Sbjct: 468 NGKAIGEGFVEFRNEADYKAALCHHKQYIGNRFIQVHPITKKAMLEKI 515
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 16/202 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K GE F AL
Sbjct: 432 CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCH 491
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----GSPHRSIPRAKSHDEGKDSAVH 169
++Q +G R+++V + KA+ ++ +R R I + G
Sbjct: 492 HKQYIGNRFIQVHPITK----KAMLEKIDLIRKRLQNFNYDQREIIMNAEAESGSPKLC- 546
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+ +P++ K +I+ F + + E+S+ I ++++G+ G+A V+F +D++ A
Sbjct: 547 ---AHISNIPYNITKMEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKAEDDARKAE 603
Query: 230 AKDRMTLGSRYIELFPSSHEEM 251
R L R + L + EEM
Sbjct: 604 RLHRKKLNGRDVVLRLITVEEM 625
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 805 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAVVD 864
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 865 LNDR-PIGSRKVKL 877
>gi|449265752|gb|EMC76898.1| RNA-binding protein 12, partial [Columba livia]
Length = 853
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 105/213 (49%), Gaps = 19/213 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V + G+PF TE DV +FF GL D V +L V +NN G P AL+R
Sbjct: 291 VSIHGMPFSATESDVKDFFLGLRVDAVHMLKDHVGRNN---GNGLVKFFSPQDTFEALKR 347
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEV-------SDVRGGSPHRSIPRAKSHDEGKDSA 167
NR M +RYVEV + +++ A + S P + R+KS K S
Sbjct: 348 NRMLMIQRYVEVSPATERQWVAAGGHITFKQTMGPSGQSHPPPPQPHSRSKSPSGQKRSR 407
Query: 168 VHTG-----ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
+ + L+GLPF + ++DFFK + EDSI+I +G+ GE FVEF N
Sbjct: 408 SRSPHEQGFCVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNE 467
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D KAA+ + +G+R+I++ P + + M E +
Sbjct: 468 ADYKAALCHHKQYIGNRFIQVHPITKKAMLEKI 500
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 32/210 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K GE F AL
Sbjct: 417 CVYLKGLPFESENKHVIDFFKKLDIVEDSIYIAYGPNGKAIGEGFVEFRNEADYKAALCH 476
Query: 115 NRQNMGRRYVEV-------------FRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHD 161
++Q +G R+++V KR + + E+ G P +P+ +H
Sbjct: 477 HKQYIGNRFIQVHPITKKAMLEKIDMIRKRLQNFSYDQREILMNAEGEP--GLPKLCAH- 533
Query: 162 EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ +P++ K +I+ F + + E+S+ I ++++G+ G+A V+F
Sbjct: 534 -------------ISNIPYNITKMEILQFLEGLAVEENSVQILVDNNGQGLGQALVQFKA 580
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D++ A R L R + L + EEM
Sbjct: 581 EDDARKAERLHRKKLNGRDVVLRLITVEEM 610
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ + L SS EM + R
Sbjct: 60 TGGTIKGSKVTLLLSSKTEMQNMIELSR 87
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 790 VIKVQNMPFTVSVDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAMAAV 847
>gi|242017923|ref|XP_002429433.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212514365|gb|EEB16695.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 498
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 28/229 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFF----HGLDIVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP++C+ V +FF DI D +LFV K + + TG+AF + +
Sbjct: 41 IIRMRGLPYECSSKQVIDFFREGEQSCDIFDGENGILFVKKPDGRSTGDAFVQFIHESEA 100
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR----------SIPRAK 158
AL ++++ +G RY+E+FRS E + N++ S R IP A
Sbjct: 101 IAALSKHKELIGTRYIELFRSTPAEVEQVSRNDIYIKAQESKPRVPAVQLPLVAPIPPAA 160
Query: 159 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAF 216
S +RLRGLP+ A + I+DF D + +H+ N G+P+GEAF
Sbjct: 161 VPQHVITSGTKKDCIRLRGLPYEAQVEHILDFLGDNANNIVLQGVHMVYNVHGQPSGEAF 220
Query: 217 VEFANAEDSKAAMAKD----RMTLG--SRYIELFPSSHEEMDEALSRGR 259
++ ++E S + A M G RY+E+F S ++M+ L+ G
Sbjct: 221 IQM-DSEVSASQAANHCHHRYMNFGKKQRYVEVFQCSGDDMNAFLTSGH 268
>gi|302850710|ref|XP_002956881.1| hypothetical protein VOLCADRAFT_121578 [Volvox carteri f.
nagariensis]
gi|300257762|gb|EFJ42006.1| hypothetical protein VOLCADRAFT_121578 [Volvox carteri f.
nagariensis]
Length = 628
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 112/213 (52%), Gaps = 23/213 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQR 114
VV+++GLPF + D+ +FF G + D +F+ H + + GEAF V + A Q+
Sbjct: 29 VVKMKGLPFKGGKEDIIKFFAGFTVRPDQVFLRKHPDGRPNGEAFVVFEDSDEARRATQK 88
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH----- 169
+R+ G E F + Y + +++ D++ ++ +A+ H++ + S H
Sbjct: 89 DRETFG----EKFGDRYVRVYPTLDSDIPDMQA-----AVAQAQLHEQAQGSGNHGHGAH 139
Query: 170 -TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED-SKA 227
+++++ LPF A + DI+ FF++F L + + + + SD +PTGEAFV+F E+ +++
Sbjct: 140 SDSVVKIKSLPFDATQLDIIQFFENFKLKPNGVQLVVRSDNKPTGEAFVDFETPEEAARS 199
Query: 228 AMAKDRMT----LGSRYIELFPSSHEEMDEALS 256
KD G RY+ L S +EM L+
Sbjct: 200 IKEKDHKVFSEKFGDRYVRLIQVSRKEMQATLA 232
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 33/195 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VV+++ LPFD T++D+ +FF + L V +NK TGEAF P + +++
Sbjct: 143 VVKIKSLPFDATQLDIIQFFENFKLKPNGVQLVVRSDNKPTGEAFVDFETPEEAARSIKE 202
Query: 115 N-----RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
+ G RYV + + R+E +A +R G
Sbjct: 203 KDHKVFSEKFGDRYVRLIQVSRKEMQATLA-----LRFGG-------------------- 237
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
G+L+++G+PF A D+ FF + + + + M++DGRPTG AF+EF +++ AM
Sbjct: 238 EGVLKMKGIPFKATAVDVRKFFTGYKVKTEGVSFIMHADGRPTGMAFIEFETPQEAVRAM 297
Query: 230 AKDRMTLGSRYIELF 244
KDR G Y + F
Sbjct: 298 EKDRAKFGPEYGDRF 312
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 169 HTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
H G +++++GLPF GK+DI+ FF F + D + + + DGRP GEAFV F ++++++
Sbjct: 25 HDGSVVKMKGLPFKGGKEDIIKFFAGFTVRPDQVFLRKHPDGRPNGEAFVVFEDSDEARR 84
Query: 228 AMAKDRMTLGS----RYIELFPS 246
A KDR T G RY+ ++P+
Sbjct: 85 ATQKDRETFGEKFGDRYVRVYPT 107
>gi|194219511|ref|XP_001497574.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Equus
caballus]
Length = 456
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 19/157 (12%)
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
+GEAF L +V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 61 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN---------- 110
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
S D D G +RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 111 ----SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 161
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
AFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 162 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 198
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 297 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 354
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 355 DKANMQHRYVELFLNS 370
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 120 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 179
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 180 KERIGHRYIEIFKSSRAE 197
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 190 FFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
FF D + + I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F S+
Sbjct: 37 FFPDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSN 96
Query: 248 HEEMDEAL 255
+ EMD L
Sbjct: 97 NVEMDWVL 104
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 297 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 356
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 357 ANMQHRYVELF 367
>gi|312094676|ref|XP_003148104.1| hypothetical protein LOAG_12543 [Loa loa]
Length = 304
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 102/217 (47%), Gaps = 31/217 (14%)
Query: 59 VRLRGLPFDCTEVDVAEFFH---------------GLDIVDVLF-VHKNNKFTGEAFCVL 102
+RLRGLPF E DV +F GL+ + F + N + +GE + L
Sbjct: 8 IRLRGLPFAAKEQDVRDFLQDISIWFLRYRSFFLFGLNAKSITFTLTSNGRASGECYVEL 67
Query: 103 GYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDE 162
V A + +R + RY+EVF E I + V GG +
Sbjct: 68 DDQEAVKEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKGSGG-------------D 114
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
++RLRGLP+SA DDI +FF ++ D++ I GRP+GEAFV A
Sbjct: 115 ADSRYASNFVVRLRGLPYSATIDDIKEFFSGLEVA-DAV-IDKEPGGRPSGEAFVRLATK 172
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
E ++ A+ + + +GSRY+E+F SS +EMD + R
Sbjct: 173 EYAELALERSKNYMGSRYVEVFRSSADEMDNSYYAAR 209
>gi|395504896|ref|XP_003756782.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Sarcophilus
harrisii]
Length = 471
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 19/157 (12%)
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
+GEAF L +V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 53 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN---------- 102
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
S D D G +RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 103 ----SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 153
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
AFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 154 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 190
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 289 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 346
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 347 DKANMQHRYVELFLNS 362
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 112 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 172 KERIGHRYIEIFKSSRAE 189
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 187 IMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
+ FF + + + I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F
Sbjct: 26 TIGFFTECKIQNGASGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVF 85
Query: 245 PSSHEEMDEAL 255
S++ EMD L
Sbjct: 86 KSNNVEMDWVL 96
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 289 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 348
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 349 ANMQHRYVELF 359
>gi|221507828|gb|EEE33415.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii VEG]
Length = 510
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 118/207 (57%), Gaps = 21/207 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH---GLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQ 113
VVRLRGLP+D E +V FF L+ +VL + + + TGEA+ L P + A++
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAIK 112
Query: 114 -RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA--VHT 170
+ + +G R++EVFR+ +E+ KA D R + +I + + D++ ++
Sbjct: 113 DLHGRLLGTRWIEVFRASEEEFQKA------DDRRKTVMAAI---SGNTDSLDASRRMNL 163
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN---AEDSKA 227
+++LRGLP+S +++I+ FFK F + D + + + DGR +G AFVE + AE ++
Sbjct: 164 NVVKLRGLPWSCSENEIVRFFKGFDIHSDDVVLGVTGDGRLSGIAFVELPSPDVAEKARE 223
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEA 254
+ K M G R+IE++P++ E+M A
Sbjct: 224 VLHKKYM--GRRFIEVYPATREDMQRA 248
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 157 AKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
A H G D+A + +LRLRGLP+SA + I+ FF F ++ + T+ DGRP+GEA
Sbjct: 396 AGPHHGGMDTANWSAQVLRLRGLPYSANEQHIVQFFHGFHMAA-ILPSTIPIDGRPSGEA 454
Query: 216 FVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+V+F +A ++ +A AK+ + R IELFPSS +EM+ A G
Sbjct: 455 YVQFVDAAEALRAFQAKNGGRMDKRMIELFPSSKQEMEFAAQGG 498
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++RLRGLP+ +++++ FFK V L D++ I + D R TGEA+V+ + + A+
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAI- 111
Query: 231 KDRM--TLGSRYIELFPSSHEEMDEALSR 257
KD LG+R+IE+F +S EE +A R
Sbjct: 112 KDLHGRLLGTRWIEVFRASEEEFQKADDR 140
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQ-R 114
V+RLRGLP+ E + +FFHG + +L + + + +GEA+ + A Q +
Sbjct: 412 VLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPIDGRPSGEAYVQFVDAAEALRAFQAK 471
Query: 115 NRQNMGRRYVEVFRSKRQE 133
N M +R +E+F S +QE
Sbjct: 472 NGGRMDKRMIELFPSSKQE 490
>gi|344246789|gb|EGW02893.1| Heterogeneous nuclear ribonucleoprotein H [Cricetulus griseus]
Length = 415
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 19/157 (12%)
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
+GEAF L +V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 27 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN---------- 76
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
S D D G +RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 77 ----SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 127
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
AFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 128 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 164
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 263 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 320
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 321 DKANMQHRYVELFLNS 336
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 86 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 145
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 146 KERIGHRYIEIFKSSRAE 163
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 190 FFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
FF D + + I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F S+
Sbjct: 3 FFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSN 62
Query: 248 HEEMDEAL 255
+ EMD L
Sbjct: 63 NVEMDWVL 70
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 263 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 322
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 323 ANMQHRYVELF 333
>gi|351714509|gb|EHB17428.1| Heterogeneous nuclear ribonucleoprotein H, partial [Heterocephalus
glaber]
Length = 444
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 19/157 (12%)
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
+GEAF L +V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 26 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN---------- 75
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
S D D G +RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 76 ----SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 126
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
AFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 127 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 163
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 262 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 319
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 320 DKANMQHRYVELFLNS 335
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 85 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 144
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 145 KERIGHRYIEIFKSSRAE 162
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 190 FFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
FF D + + I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F S+
Sbjct: 2 FFPDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSN 61
Query: 248 HEEMDEAL 255
+ EMD L
Sbjct: 62 NVEMDWVL 69
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 262 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 321
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 322 ANMQHRYVELF 332
>gi|449474971|ref|XP_002195792.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Taeniopygia
guttata]
Length = 419
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 19/157 (12%)
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
+GEAF L V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 35 SGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN---------- 84
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
S D D G +RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 85 ----SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 135
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
AFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 136 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 172
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 271 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 328
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 329 DKANMQHRYVELFLNS 344
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 94 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 153
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 154 KERIGHRYIEIFKSSRAE 171
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
I +GRP+GEAF E + ED K A+ KDR T+G RY+E+F S++ EMD L
Sbjct: 24 IRFIYTREGRPSGEAFAELESEEDVKLALKKDRETMGHRYVEVFKSNNVEMDWVL 78
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 271 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 330
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 331 ANMQHRYVELF 341
>gi|354486518|ref|XP_003505427.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H [Cricetulus
griseus]
Length = 447
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 19/157 (12%)
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
+GEAF L +V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 29 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN---------- 78
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
S D D G +RLRGLPF K++I+ FF + + I + ++ GR TGE
Sbjct: 79 ----SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGE 129
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
AFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 130 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 166
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 265 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 322
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 323 DKANMQHRYVELFLNS 338
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 88 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 147
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 148 KERIGHRYIEIFKSSRAE 165
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 190 FFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
FF D + + I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F S+
Sbjct: 5 FFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSN 64
Query: 248 HEEMDEAL 255
+ EMD L
Sbjct: 65 NVEMDWVL 72
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPL 106
G Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA
Sbjct: 255 GSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE 314
Query: 107 QVDFALQRNRQNMGRRYVEVF 127
A+ +++ NM RYVE+F
Sbjct: 315 DAVAAMSKDKANMQHRYVELF 335
>gi|341877456|gb|EGT33391.1| hypothetical protein CAEBREN_08325 [Caenorhabditis brenneri]
Length = 569
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 6/193 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
V RGLP++ TE D+ +FF I + +N + G+A + AL+++R++
Sbjct: 7 VSCRGLPWEATEEDLRDFFGNTGIESLDIPKRNGRTCGDATVTFTNEDDYNRALKKDREH 66
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
+G RY+EVF + + D P PR + D I+RLRGL
Sbjct: 67 LGSRYIEVFP------FDSAPRRRGDRDDYRPRSFPPRDRYSDRAGPRGGLDPIVRLRGL 120
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PFS DI DFF + D I + RP GEA+V F + E + A + +G
Sbjct: 121 PFSVTIRDINDFFAPLPIVRDGILLPDQQQARPGGEAYVCFESMESMQIAKQRHMKNIGH 180
Query: 239 RYIELFPSSHEEM 251
RYIE+F +S+ E+
Sbjct: 181 RYIEVFEASNREL 193
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
P+VRLRGLPF T D+ +FF L IV +L + + GEA+ + A Q
Sbjct: 113 PIVRLRGLPFSVTIRDINDFFAPLPIVRDGILLPDQQQARPGGEAYVCFESMESMQIAKQ 172
Query: 114 RNRQNMGRRYVEVFRSKRQE 133
R+ +N+G RY+EVF + +E
Sbjct: 173 RHMKNIGHRYIEVFEASNRE 192
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD-GRPTGEAFVEFANAEDSKAAMA 230
+LR+RG+PF A + D+ DFF + + + + + RP+G+A V F N +D A+
Sbjct: 492 VLRMRGVPFRATETDVYDFFH--PIRPNQVELIRDYQFQRPSGDARVIFFNRKDYDDALM 549
Query: 231 KDRMTLGSRYIELFPSS 247
KD+ +G RYIE+ P +
Sbjct: 550 KDKQYMGERYIEMIPDN 566
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V+R+RG+PF TE DV +FFH + + V+++ ++ + +G+A + D AL ++
Sbjct: 492 VLRMRGVPFRATETDVYDFFHPIRPNQVELIRDYQFQRPSGDARVIFFNRKDYDDALMKD 551
Query: 116 RQNMGRRYVEVF 127
+Q MG RY+E+
Sbjct: 552 KQYMGERYIEMI 563
>gi|74202595|dbj|BAE24862.1| unnamed protein product [Mus musculus]
Length = 171
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 96/179 (53%), Gaps = 24/179 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + V F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + P+ S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHT-------GPN-------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 171
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S +++M FF D + + + +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
>gi|326517396|dbj|BAK00065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 69/114 (60%), Gaps = 10/114 (8%)
Query: 18 AKRQRLIDQGPSFYGTPPSS----------SFMYNPPPAYGYVSQPPPFPVVRLRGLPFD 67
+KR R+++ GP ++ SS S+ N A G S FP VRLRGLPFD
Sbjct: 55 SKRARMMEPGPPYFAGMGSSAGGSGSSFYPSYGGNLAGAAGVNSGIQNFPAVRLRGLPFD 114
Query: 68 CTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGR 121
C +VD+++FF GLDIVD L VHKN +F+GEAF V +Q +FAL RN++ R
Sbjct: 115 CEDVDISKFFSGLDIVDCLLVHKNGRFSGEAFVVFPSSMQAEFALHRNKRESSR 168
>gi|241999526|ref|XP_002434406.1| RNA-binding protein, putative [Ixodes scapularis]
gi|215497736|gb|EEC07230.1| RNA-binding protein, putative [Ixodes scapularis]
Length = 1026
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 101/212 (47%), Gaps = 18/212 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNR 116
VV ++GLP+ C+E DV +FF GL+I+D+ H +N + TG F D A+ +R
Sbjct: 634 VVVMKGLPYSCSETDVLQFFSGLNILDLFVEHDHNGRATGTGFVEFASKRDFDAAMNMHR 693
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP-------------HRSIPRAKSHDEG 163
+ MG RY+E+ R + +A VR P H IP A G
Sbjct: 694 RKMGHRYIELTVGTRDSMH--LARNADGVRPDGPAVPPRTREEEAPHHSPIPPAP-LGHG 750
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
HT + L GLP + DI DFF + +IHI + ++G PTG AF EFA
Sbjct: 751 SVPLAHTCVSML-GLPDTVTDRDIADFFSTQGVIPRAIHIMLGANGVPTGHAFAEFAAHA 809
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
D + A K+ +LG I L + E+ +AL
Sbjct: 810 DCERAFLKNGASLGPHTITLKTIPYSEVAQAL 841
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+R++ LP++A DI +F+ + E +HI G G+AF+ F+ ED++ AM +
Sbjct: 4 IIRMQNLPWAANSLDIRRYFQGLGIPEGGVHIV----GGDKGDAFIAFSTDEDARQAMER 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I+L SS EM + + R
Sbjct: 60 DAGKIKEVRIKLLLSSRAEMQRVIDQAR 87
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +PF AG DDI+ FF F L+++ + + G+PTG+A + FA+ +++ A+AK
Sbjct: 951 VVTATNIPFRAGVDDIIAFFHGFDLTKEKVMRRFSDRGQPTGDARIAFASPREAQEALAK 1010
>gi|324509132|gb|ADY43846.1| Heterogeneous nuclear ribonucleoprotein F [Ascaris suum]
Length = 192
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFAL 112
P +RLRGLPF E DV F G+ + F + + + +GE + L V AL
Sbjct: 3 PETNFIRLRGLPFAAKESDVRNFLQGITAKSITFTLTSSGRASGECYVELNDNSAVKEAL 62
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ +R + RY+EVF E + + V +RG E + +
Sbjct: 63 KLDRNEINGRYIEVFTVSEGELAMMVRHGV--IRGSG------------ESESRYASNYV 108
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLP+SA DDI +FFK +++ + I GRP+GEAFV A+ E ++ A+ +
Sbjct: 109 VRLRGLPYSANVDDIKEFFKGLDVAD--VVIDKEQGGRPSGEAFVRLASKEHAELALERS 166
Query: 233 RMTLGSRY 240
+ +GSRY
Sbjct: 167 KNNMGSRY 174
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
T +RLRGLPF+A + D+ +F + ++ SI T+ S GR +GE +VE + K A
Sbjct: 4 ETNFIRLRGLPFAAKESDVRNFLQG--ITAKSITFTLTSSGRASGECYVELNDNSAVKEA 61
Query: 229 MAKDRMTLGSRYIELFPSSHEEM 251
+ DR + RYIE+F S E+
Sbjct: 62 LKLDRNEINGRYIEVFTVSEGEL 84
>gi|322778928|gb|EFZ09344.1| hypothetical protein SINV_16613 [Solenopsis invicta]
Length = 565
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 20/218 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG----LDIVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+DC V EFF ++D VLFV K + + TG+AF +
Sbjct: 79 IVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFVKKPDGRATGDAFVLFAKEEDA 138
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAI--ANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
AL ++R +G RY+E+FRS E + + A + + P + S
Sbjct: 139 VKALSKHRDCIGSRYIELFRSTTAEVQQVLNRATDPKQMILPPPPIAQLPPLLPQHIITS 198
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAED 224
+RLRGLP+ A + I++F + + +H+ N+ G+P+GEAF++ ++E
Sbjct: 199 GTRKDCVRLRGLPYEALVEHILEFMGEHSKNIVYQGVHMVYNAQGQPSGEAFIQM-DSEA 257
Query: 225 SKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALS 256
S A A R M G RYIE+F S ++M+ L+
Sbjct: 258 SAYACASQRHHRYMIYGKKQRYIEVFQCSGDDMNLVLT 295
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 22/156 (14%)
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
D AL+R++ +MG RY+EV+++ +++ V+ G H + R
Sbjct: 32 DMALKRHKHHMGTRYIEVYKASGEDFVG-----VAGGTSGEAHAFLSRGAQ--------- 77
Query: 169 HTGILRLRGLPFSAGKDDIMDFFK------DFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
I+R+RGLP+ +++FF+ + ED + DGR TG+AFV FA
Sbjct: 78 --VIVRMRGLPYDCVAKQVLEFFQSGQKPCQVLDGEDGVLFVKKPDGRATGDAFVLFAKE 135
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
ED+ A++K R +GSRYIELF S+ E+ + L+R
Sbjct: 136 EDAVKALSKHRDCIGSRYIELFRSTTAEVQQVLNRA 171
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
+ + ++ GR GEA V F N E A+ + + +G+RYIE++ +S E+
Sbjct: 7 VALCLSPMGRRNGEALVRFINKEHRDMALKRHKHHMGTRYIEVYKASGED 56
>gi|384253335|gb|EIE26810.1| hypothetical protein COCSUDRAFT_46239 [Coccomyxa subellipsoidea
C-169]
Length = 877
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 103/234 (44%), Gaps = 40/234 (17%)
Query: 55 PFP--VVRLRGLPFDCTEVDVAEFFHGLDI----VDVLFV-HKNNKFTGEAFCVLGYPLQ 107
PFP V+R+RGLP+ T DV FF G++I + F + + GEA+
Sbjct: 318 PFPGWVLRMRGLPYGATAEDVVHFFEGIEIERGSAGIAFTCTPDGRPKGEAYVEFPSEDA 377
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE-------------------------- 141
AL+R++ +G RY+E+F S + +A+
Sbjct: 378 QKEALKRHKNEIGDRYIELFVSSKANMIQAVQQSNYYLGQSQHAMGPSLLPHPLPPLPLH 437
Query: 142 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 201
G+P+ P + + LRLRGLP+SAG D+I FF F L+ D I
Sbjct: 438 GPLASFGAPYGHAPYGQGAPMQSVVSADGSTLRLRGLPYSAGIDEITSFFAGFSLASDGI 497
Query: 202 HITMNSDGR----PTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFP--SSH 248
+ D TG A+V F N E++ +A + R +G+RYIE P +SH
Sbjct: 498 QVVTKPDKEGNQLGTGVAYVRFGNPEEAERARKERHRAQMGARYIECLPFTASH 551
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+LR+RGLP+ A +D++ FF+ + S I T DGRP GEA+VEF + + K A+
Sbjct: 323 VLRMRGLPYGATAEDVVHFFEGIEIERGSAGIAFTCTPDGRPKGEAYVEFPSEDAQKEAL 382
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ + +G RYIELF SS M +A+ +
Sbjct: 383 KRHKNEIGDRYIELFVSSKANMIQAVQQ 410
>gi|422294428|gb|EKU21728.1| rna binding protein, partial [Nannochloropsis gaditana CCMP526]
Length = 572
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 18/165 (10%)
Query: 85 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 143
+ FVH+ + + +GEAF VL V AL +++Q MG R++++F S E + + +
Sbjct: 315 IFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVG--AA 372
Query: 144 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
V G+ KD + G+L++RGLPF D+ +F + ++ + I
Sbjct: 373 AVTLGA--------------KDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFI 418
Query: 204 TMNSDGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRYIELFPSS 247
TM +DGRPTGEA+V F ED+ AA A ++ T+ +R+I+L+ +S
Sbjct: 419 TMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLAS 463
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 109/219 (49%), Gaps = 26/219 (11%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDI-------VDVLFVHKNNKFTGEAFCVLGYPL 106
P ++RL GLP+ C+ DV F + + D+ + ++ GEA +G
Sbjct: 86 PGTLILRLSGLPWKCSVADVQNFLKHIGVSTRPDPAADIKILDDSS---GEALVRVGSAE 142
Query: 107 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP-RAKSHDEGKD 165
+ + AL+ +G+R+V++ + + + A S+ +P +P A + E D
Sbjct: 143 EEETALKLKVGRLGKRFVDIGSTTEEAFEATPAT--SEEAMNAPATVVPDAATATGEAGD 200
Query: 166 -------------SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 212
S+ G++R+RGLP+SA + DI+ FF F ++E +H+ + GR +
Sbjct: 201 GTAGEASSLTVPESSTPQGVVRMRGLPYSATEKDILAFFSGFGVAEGGVHMHYDHMGRAS 260
Query: 213 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
G+A+V F +++ A+ D+ +G R+I+LF SS EM
Sbjct: 261 GQAYVVFETVPEAQHALKLDKEKIGERWIDLFLSSKPEM 299
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 31/187 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDF 110
V+++RGLPF T DVA +F HG+ I + + + TGEA+ + P
Sbjct: 387 VLKMRGLPFQTTVPDVATWFGSYRVAPHGVFIT----MGADGRPTGEAYVIFETPEDAVA 442
Query: 111 ALQR-NRQNMGRRYVEVFRSKRQEYYKAIANE--VSDVRGGSP-HRSIPRAKSHDEGKDS 166
A + N+Q M R+++++ + + + Y + + V GG P + + P
Sbjct: 443 AREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMT--------- 493
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
RLRG+P + ++++ FF L ++I +S GR TGEA+ EF + +D +
Sbjct: 494 -----CARLRGVPSTVTEEELFRFFAG--LQVIGLYICRDSSGRATGEAYAEFGSLDDCQ 546
Query: 227 AAMAKDR 233
AM+++R
Sbjct: 547 QAMSRNR 553
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 54/200 (27%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNN--KFTGEAFCVLGYPLQVDFA 111
P VVR+RGLP+ TE D+ FF G + + + +H ++ + +G+A+ V + A
Sbjct: 217 PQGVVRMRGLPYSATEKDILAFFSGFGVAEGGVHMHYDHMGRASGQAYVVFETVPEAQHA 276
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L+ +++ +G R++++F S + E A
Sbjct: 277 LKLDKEKIGERWIDLFLSSKPEMLHA---------------------------------- 302
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
FF + + I DGR +GEAFV + E + A+ +
Sbjct: 303 -----------------HFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQ 345
Query: 232 DRMTLGSRYIELFPSSHEEM 251
D+ +GSR++++F S E+
Sbjct: 346 DKQKMGSRWLDIFESHPGEL 365
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFALQ 113
P RLRG+P TE ++ FF GL ++ + ++ + TGEA+ G A+
Sbjct: 491 PMTCARLRGVPSTVTEEELFRFFAGLQVIGLYICRDSSGRATGEAYAEFGSLDDCQQAMS 550
Query: 114 RNRQNM-----GRRYVEV 126
RNR M G R +EV
Sbjct: 551 RNRDYMPGGGVGDRPIEV 568
>gi|341879523|gb|EGT35458.1| CBN-HRPF-1 protein [Caenorhabditis brenneri]
Length = 569
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 6/193 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
V RGLP++ TE D+ +FF I + +N + G+A + AL+++R++
Sbjct: 7 VSCRGLPWEATEEDLRDFFGNTGIESLDIPKRNGRTCGDATVTFTNEDDYNRALKKDREH 66
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
+G RY+EVF + + D P PR + D I+RLRGL
Sbjct: 67 LGSRYIEVFP------FDSAPRRRGDRDDYRPRSFPPRDRYSDRAGPRGGLDPIVRLRGL 120
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PFS DI DFF + D I + RP GEA+V F + E + A + +G
Sbjct: 121 PFSVTIRDINDFFAPLPIVRDGILLPDQQRARPGGEAYVCFESMESMQIAKQRHMKNIGH 180
Query: 239 RYIELFPSSHEEM 251
RYIE+F +S+ E+
Sbjct: 181 RYIEVFEASNREL 193
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
P+VRLRGLPF T D+ +FF L IV +L + + GEA+ + A Q
Sbjct: 113 PIVRLRGLPFSVTIRDINDFFAPLPIVRDGILLPDQQRARPGGEAYVCFESMESMQIAKQ 172
Query: 114 RNRQNMGRRYVEVFRSKRQE 133
R+ +N+G RY+EVF + +E
Sbjct: 173 RHMKNIGHRYIEVFEASNRE 192
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD-GRPTGEAFVEFANAEDSKAAMA 230
+LR+RG+PF A + D+ DFF + + + + + RP+G+A V F N +D A+
Sbjct: 492 VLRMRGVPFRATETDVYDFFH--PIRPNQVELIRDYQFQRPSGDARVIFFNRKDYDDALM 549
Query: 231 KDRMTLGSRYIELFPSS 247
KD+ +G RYIE+ P +
Sbjct: 550 KDKQYMGERYIEMIPDN 566
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V+R+RG+PF TE DV +FFH + + V+++ ++ + +G+A + D AL ++
Sbjct: 492 VLRMRGVPFRATETDVYDFFHPIRPNQVELIRDYQFQRPSGDARVIFFNRKDYDDALMKD 551
Query: 116 RQNMGRRYVEVF 127
+Q MG RY+E+
Sbjct: 552 KQYMGERYIEMI 563
>gi|432118737|gb|ELK38193.1| Epithelial splicing regulatory protein 1 [Myotis davidii]
Length = 596
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 24/192 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 194 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 253
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 254 HKHHMGTRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 297
Query: 175 LRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-- 229
+RGLPF+A D+++ FF ++ I DGRPTG+AFV FA E ++ A+
Sbjct: 298 MRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 357
Query: 230 AKDRMTLGSRYI 241
KD + L +++
Sbjct: 358 HKDLLVLPQQFV 369
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 47/210 (22%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF V FA
Sbjct: 295 IVRMRGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAF--------VLFA 346
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
+ QN R++ ++ P + +P D
Sbjct: 347 CEEYAQNALRKHKDLLVL--------------------PQQFVPPTNVRD---------- 376
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + A
Sbjct: 377 CIRLRGLPYAATIEDILDFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAYLAA 436
Query: 230 AK-DRMTLGSRYIELFPSSHEEMDEALSRG 258
K + T+ RY+E+F S EEM+ L G
Sbjct: 437 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 466
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A+ +
Sbjct: 194 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 253
Query: 232 DRMTLGSRYIELFPSSHEE 250
+ +G+RYIE++ ++ E+
Sbjct: 254 HKHHMGTRYIEVYKATGED 272
>gi|355694919|gb|AER99830.1| heteroproteinous nuclear ribonucleoprotein F [Mustela putorius
furo]
Length = 342
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 19/154 (12%)
Query: 98 AFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRA 157
AF L V AL+++R++MG RY+EVF+S R E + + S P
Sbjct: 1 AFVELESEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------SGP-- 46
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
S D D G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV
Sbjct: 47 NSADTAND-----GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFV 101
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 102 QFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 135
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 234 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 291
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 292 DRANMQHRYIELFLNS 307
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF CT+ ++ +FF GL+IV L V K TGEAF + AL ++
Sbjct: 57 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 116
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+EVF+S ++E
Sbjct: 117 KERIGHRYIEVFKSSQEE 134
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 225 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 284
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 285 AVAAMSKDRANMQHRYIELF 304
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
AFVE + +D K A+ KDR ++G RYIE+F S EMD L
Sbjct: 1 AFVELESEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL 41
>gi|427788565|gb|JAA59734.1| Putative rna-binding protein [Rhipicephalus pulchellus]
Length = 1011
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 105/230 (45%), Gaps = 32/230 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNR 116
VV ++GLP++ +E DV +FF GL+++D+L H ++ + TG AF G + A+ R
Sbjct: 527 VVVMKGLPYNTSEQDVLQFFSGLNVLDILVEHDRSGRATGMAFVEFGDKRDFETAMSMQR 586
Query: 117 QNMGRRYVEVFRSKRQEYYKA---------------------IANEVSDVRG-----GSP 150
+ +G RY+E+ R Y A + + V RG G
Sbjct: 587 RKIGHRYIELSVGSRDAMYAARNGDNIRPDGMPVGRRDEEPPVGHGVGPDRGPDVGHGPM 646
Query: 151 HRS--IPRAKSHDEGK--DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206
H P A +H G HT + L GLP + DI DFF + +IHI +
Sbjct: 647 HGPGMGPAAPAHGAGHVLVPPGHTCVSML-GLPNTVTDRDIADFFSIQGVIPRAIHIMLG 705
Query: 207 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 256
++G PTG AF EFA D + A +D LG I L + E+ +AL
Sbjct: 706 ANGVPTGHAFAEFATHADCERAFLQDGANLGPHVIALKTIPYSEVAQALG 755
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +F+ + E +HI G G+AF+ F + ED++ AM +
Sbjct: 4 IIRLQNLPWAANSLDIRRYFQGLNIPEGGVHIV----GGEKGDAFIAFGSDEDARQAMER 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEVRIKLLLSSRAEMQRIIDQAR 87
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 146 RGGS-PHRSIP--RAKSHDE------GKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 195
RGG P R P RA H+E G DS G ++ +P+ AG +DI++FF+ F
Sbjct: 900 RGGPLPDRGGPLLRAPRHEEPPLPPRGMDSFGKPGCVVTATNIPYRAGVEDIINFFQGFE 959
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 243
L++ ++ N G+ TG+A + F D++ A+AK + + R I L
Sbjct: 960 LTKANVMRRFNDRGQATGDARIAFPTPRDAQEALAKFNNRPMQGRAISL 1008
>gi|335310367|ref|XP_003361999.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like [Sus
scrofa]
Length = 444
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 29/199 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN--------------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I+ FF + + + AFV+FA+ E ++ A+ K
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMXXXXXXX-----XAFVQFASQEIAEKALKKH 167
Query: 233 RMTLGSRYIELFPSSHEEM 251
+ +G RYIE+F SS E+
Sbjct: 168 KERIGHRYIEIFKSSRAEV 186
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S+ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMDWVL 97
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 285 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 342
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 343 DKANMQHRYVELFLNS 358
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 285 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 344
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 345 ANMQHRYVELF 355
>gi|422294318|gb|EKU21618.1| rna binding protein [Nannochloropsis gaditana CCMP526]
Length = 302
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 18/165 (10%)
Query: 85 VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS 143
+ FVH+ + + +GEAF VL V AL +++Q MG R++++F S E + +
Sbjct: 17 IFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFESHPGELFSRVGAAAV 76
Query: 144 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
+ KD + G+L++RGLPF D+ +F + ++ + I
Sbjct: 77 TL----------------GAKDDVGYAGVLKMRGLPFQTTVPDVATWFGSYRVAPHGVFI 120
Query: 204 TMNSDGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRYIELFPSS 247
TM +DGRPTGEA+V F ED+ AA A ++ T+ +R+I+L+ +S
Sbjct: 121 TMGADGRPTGEAYVIFETPEDAVAAREALNKQTMNNRWIDLYLAS 165
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 31/185 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDF 110
V+++RGLPF T DVA +F HG+ I + + + TGEA+ + P
Sbjct: 89 VLKMRGLPFQTTVPDVATWFGSYRVAPHGVFIT----MGADGRPTGEAYVIFETPEDAVA 144
Query: 111 ALQR-NRQNMGRRYVEVFRSKRQEYYKAIANE--VSDVRGGSP-HRSIPRAKSHDEGKDS 166
A + N+Q M R+++++ + + + Y + + V GG P + + P +
Sbjct: 145 AREALNKQTMNNRWIDLYLASKGDVYTSTVHSPIVGQAHGGCPVYANTPMTCA------- 197
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
RLRG+P + ++++ FF L ++I +S GR TGEA+ EF + +D +
Sbjct: 198 -------RLRGVPSTVTEEELFRFFAG--LQVIGLYICRDSSGRATGEAYAEFGSLDDCQ 248
Query: 227 AAMAK 231
AM++
Sbjct: 249 QAMSR 253
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 186 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245
D+ FF + + I DGR +GEAFV + E + A+ +D+ +GSR++++F
Sbjct: 2 DLQHFFASVGPTANGIFFVHRMDGRSSGEAFVVLHSQEAVRQALMQDKQKMGSRWLDIFE 61
Query: 246 SSHEEM 251
S E+
Sbjct: 62 SHPGEL 67
>gi|427788569|gb|JAA59736.1| Putative rna-binding protein [Rhipicephalus pulchellus]
Length = 1004
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 105/230 (45%), Gaps = 32/230 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNR 116
VV ++GLP++ +E DV +FF GL+++D+L H ++ + TG AF G + A+ R
Sbjct: 527 VVVMKGLPYNTSEQDVLQFFSGLNVLDILVEHDRSGRATGMAFVEFGDKRDFETAMSMQR 586
Query: 117 QNMGRRYVEVFRSKRQEYYKA---------------------IANEVSDVRG-----GSP 150
+ +G RY+E+ R Y A + + V RG G
Sbjct: 587 RKIGHRYIELSVGSRDAMYAARNGDNIRPDGMPVGRRDEEPPVGHGVGPDRGPDVGHGPM 646
Query: 151 HRS--IPRAKSHDEGK--DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206
H P A +H G HT + L GLP + DI DFF + +IHI +
Sbjct: 647 HGPGMGPAAPAHGAGHVLVPPGHTCVSML-GLPNTVTDRDIADFFSIQGVIPRAIHIMLG 705
Query: 207 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALS 256
++G PTG AF EFA D + A +D LG I L + E+ +AL
Sbjct: 706 ANGVPTGHAFAEFATHADCERAFLQDGANLGPHVIALKTIPYSEVAQALG 755
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +F+ + E +HI G G+AF+ F + ED++ AM +
Sbjct: 4 IIRLQNLPWAANSLDIRRYFQGLNIPEGGVHIV----GGEKGDAFIAFGSDEDARQAMER 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEVRIKLLLSSRAEMQRIIDQAR 87
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 146 RGGS-PHRSIP--RAKSHDE------GKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFV 195
RGG P R P RA H+E G DS G ++ +P+ AG +DI++FF+ F
Sbjct: 893 RGGPLPDRGGPLLRAPRHEEPPLPPRGMDSFGKPGCVVTATNIPYRAGVEDIINFFQGFE 952
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 243
L++ ++ N G+ TG+A + F D++ A+AK + + R I L
Sbjct: 953 LTKANVMRRFNDRGQATGDARIAFPTPRDAQEALAKFNNRPMQGRAISL 1001
>gi|24653910|ref|NP_725483.1| fusilli, isoform B [Drosophila melanogaster]
gi|21645398|gb|AAM70984.1| fusilli, isoform B [Drosophila melanogaster]
gi|27820059|gb|AAO25059.1| GH20047p [Drosophila melanogaster]
gi|71834259|gb|AAZ41802.1| GH11127p [Drosophila melanogaster]
gi|220947106|gb|ACL86096.1| fus-PB [synthetic construct]
Length = 633
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 118/261 (45%), Gaps = 61/261 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+D T V +FF H LD + VLFV K + + TG+AF +
Sbjct: 47 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 106
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV--SDVRGGSPHRSIP---------- 155
AL R+R+++G+RY+E+FRS E + + + + G H P
Sbjct: 107 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 166
Query: 156 --------RAKSHDEGKD----------------------SAVHTGILRLRGLPFSAGKD 185
+ SH G S +RLRGLP+ A +
Sbjct: 167 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 226
Query: 186 DIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS- 238
I+ F DF + +H+ +N+ G+P+GEAF++ + E+S A+ R M G
Sbjct: 227 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCAQRRHNHYMMFGKK 285
Query: 239 -RYIELFPSSHEEMDEALSRG 258
RYIE+F S ++M+ L+ G
Sbjct: 286 YRYIEVFQCSGDDMNMVLNGG 306
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 23/155 (14%)
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
AL+R++ ++G RY+EV+R+ +++ + GG A + + S
Sbjct: 1 MALKRHKHHIGTRYIEVYRASGEDFLA--------IAGG--------ASNEAQAFLSKGA 44
Query: 170 TGILRLRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANA 222
I+R+RGLP+ A ++DFF VL + + DGR TG+AFV FAN
Sbjct: 45 QVIIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANE 104
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 105 TDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 139
>gi|322801457|gb|EFZ22118.1| hypothetical protein SINV_07549 [Solenopsis invicta]
Length = 425
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 24/185 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ T ++ +FF I + + + + +GEA+ + P ++ A
Sbjct: 14 VVKVRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTTSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+R+R +MG RY+EVF++KR E + ++ ++A+ G
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKRSGLNL-------------------ENAMDDGC 114
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF K++I FF + + I + + GR TGEA+V+F N + ++ A+ K
Sbjct: 115 VRLRGLPFGCSKEEIAQFFSGLEILPNGISLPTDYTGRSTGEAYVQFVNKDVAERALQKH 174
Query: 233 RMTLG 237
+ +G
Sbjct: 175 KEKIG 179
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D+IM FF D +S ++ +H+T + +GRP+GEA+VE ED + A
Sbjct: 14 VVKVRGLPWSTTVDEIMKFFGDCSISNGKNGVHMTTSREGRPSGEAYVEMDTPEDIEKAC 73
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
+DR +G RYIE+F + EM+ + R
Sbjct: 74 KRDRDHMGHRYIEVFKAKRGEMEWVVKR 101
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 9/101 (8%)
Query: 144 DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
D++GG+ R + + G +S V++ + +RGLPF A + DI DFF+ + ++ I
Sbjct: 313 DMKGGNY-----RGNNDNWGGNSGVYS--IHMRGLPFKATEQDIADFFRP--IEPVNVRI 363
Query: 204 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
+ + GRP+GEA VEFA E++ AM KD+ + RYIELF
Sbjct: 364 ILENGGRPSGEADVEFATHEEALKAMCKDKSHMSHRYIELF 404
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN-NKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ +RGLPF TE D+A+FF ++ V+V + +N + +GEA + A+ +++
Sbjct: 335 IHMRGLPFKATEQDIADFFRPIEPVNVRIILENGGRPSGEADVEFATHEEALKAMCKDKS 394
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 395 HMSHRYIELF 404
>gi|431895711|gb|ELK05132.1| Heterogeneous nuclear ribonucleoprotein H2 [Pteropus alecto]
Length = 422
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 19/157 (12%)
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
+GEAF L +V AL+++R+ MG RYVEVF+S E + + +
Sbjct: 27 SGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGPN---------- 76
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
S D D G +RLRGLPF K++I+ FF + + + + ++ GR TGE
Sbjct: 77 ----SPDTAND-----GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE 127
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
AFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 128 AFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEV 164
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 263 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 320
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 321 DKANMQHRYVELFLNS 336
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 86 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 145
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 146 KERIGHRYIEIFKSSRAE 163
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 188 MDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245
M FF D + + I +GRP+GEAFVE + ++ K A+ KDR T+G RY+E+F
Sbjct: 1 MRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFK 60
Query: 246 SSHEEMDEAL 255
S+ EMD L
Sbjct: 61 SNSVEMDWVL 70
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 263 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 322
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 323 ANMQHRYVELF 333
>gi|24653903|ref|NP_725480.1| fusilli, isoform A [Drosophila melanogaster]
gi|7303049|gb|AAF58117.1| fusilli, isoform A [Drosophila melanogaster]
Length = 557
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 118/261 (45%), Gaps = 61/261 (23%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--------HGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQ 107
++R+RGLP+D T V +FF H LD + VLFV K + + TG+AF +
Sbjct: 47 IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANETD 106
Query: 108 VDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV--SDVRGGSPHRSIP---------- 155
AL R+R+++G+RY+E+FRS E + + + + G H P
Sbjct: 107 APKALGRHRESIGQRYIELFRSTTAEVQQVLNRSMDPKNYESGGGHSQPPLIAQLPTMQL 166
Query: 156 --------RAKSHDEGKD----------------------SAVHTGILRLRGLPFSAGKD 185
+ SH G S +RLRGLP+ A +
Sbjct: 167 PLLPQVGAHSLSHSLGASPANLCPPVPPPALPLPTQHLITSGTTKNCIRLRGLPYEAMVE 226
Query: 186 DIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR----MTLGS- 238
I+ F DF + +H+ +N+ G+P+GEAF++ + E+S A+ R M G
Sbjct: 227 HILHFLDDFAKHIIYQGVHMVINAQGQPSGEAFIQM-DLEESARLCAQRRHNHYMMFGKK 285
Query: 239 -RYIELFPSSHEEMDEALSRG 258
RYIE+F S ++M+ L+ G
Sbjct: 286 YRYIEVFQCSGDDMNMVLNGG 306
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 23/155 (14%)
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
AL+R++ ++G RY+EV+R+ +++ AIA S+ A++ K + V
Sbjct: 1 MALKRHKHHIGTRYIEVYRASGEDFL-AIAGGASN-----------EAQAFLS-KGAQV- 46
Query: 170 TGILRLRGLPFSAGKDDIMDFFKD------FVL-SEDSIHITMNSDGRPTGEAFVEFANA 222
I+R+RGLP+ A ++DFF VL + + DGR TG+AFV FAN
Sbjct: 47 --IIRMRGLPYDATAKQVLDFFTTGDTPPCHVLDGNEGVLFVKKPDGRATGDAFVLFANE 104
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
D+ A+ + R ++G RYIELF S+ E+ + L+R
Sbjct: 105 TDAPKALGRHRESIGQRYIELFRSTTAEVQQVLNR 139
>gi|118381178|ref|XP_001023750.1| hypothetical protein TTHERM_00245200 [Tetrahymena thermophila]
gi|89305517|gb|EAS03505.1| hypothetical protein TTHERM_00245200 [Tetrahymena thermophila
SB210]
Length = 570
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 12/215 (5%)
Query: 53 PPPFP------VVRLRGLPFDCTEVDVAEFFHGLDIV--DVLFVHKNN-KFTGEAFCVLG 103
P PF +R+RGLP+ E ++ E + I D+ F++ + KF+GEA+ +
Sbjct: 259 PEPFKNLSQQHFIRIRGLPYSAREPEIYELLKNIRIYKEDIAFLYDSEGKFSGEAYVRVY 318
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
L AL N + R+VE+F + E+ +A ++ + R +P D
Sbjct: 319 SQLDKQEALCYNLNKVEGRFVEIFETTENEFNRAKISQFPEKRNQDDE--LPNETQFDLN 376
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
K G++R+RGLP+S ++DI FFK + + I + GRP GE FV F N +
Sbjct: 377 KIVTEGAGVVRIRGLPYSCTEEDIKKFFKGLTILQGGIKRAI-LGGRPGGECFVIFQNKD 435
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
D+ A+ + +R+IE+F ++ +E + ++
Sbjct: 436 DAHKALNFHMEKIHNRFIEVFLATVKEFENYMAHN 470
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 16/193 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VVR+RGLP+ CTE D+ +FF GL I+ + + GE F + AL +
Sbjct: 385 VVRIRGLPYSCTEEDIKKFFKGLTILQGGIKRAILGGRPGGECFVIFQNKDDAHKALNFH 444
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSD---VRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ + R++EVF + +E+ +A+ + V +IP+ K
Sbjct: 445 MEKIHNRFIEVFLATVKEFENYMAHNFVNSAPVYSKDNMPNIPQEK----------RKST 494
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAK 231
L + G+PFS K I++FFK F ++E IH+ + G+ +G A V F + E +A K
Sbjct: 495 LMVMGMPFSVTKQKILEFFKGFDINEREIHLLCSHTGKFSGSALVTFEDELEAQRALKTK 554
Query: 232 DRMTLGSRYIELF 244
+ + +RY+ELF
Sbjct: 555 NFSYIENRYLELF 567
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 101 VLGYPLQVDFALQ--RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAK 158
V +P ++ + Q + Q+ RY++ K + Y VRG SP ++
Sbjct: 217 VFNHPKLINNSYQVVLDNQDSKTRYIQSREKKSKNNY---------VRGRSPEPFKNLSQ 267
Query: 159 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 218
H +R+RGLP+SA + +I + K+ + ++ I +S+G+ +GEA+V
Sbjct: 268 QH-----------FIRIRGLPYSAREPEIYELLKNIRIYKEDIAFLYDSEGKFSGEAYVR 316
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
+ D + A+ + + R++E+F ++ E + A
Sbjct: 317 VYSQLDKQEALCYNLNKVEGRFVEIFETTENEFNRA 352
>gi|159485042|ref|XP_001700558.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158272198|gb|EDO98002.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 229
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 110/208 (52%), Gaps = 18/208 (8%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV--HKNNKFTGEAFCVLGYPL 106
S P VV+++GLPF ++ D+ +FF G + + +F+ H + + GEAF V
Sbjct: 27 TSLPQDGSVVKMKGLPFKGSKEDIIKFFAGFSLRTEHVFLRKHPDGRPNGEAFVVFENSD 86
Query: 107 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH--RSIPRAKSHDEG- 163
+ A Q++R+ G E F + Y + +++ D++ +P+ + + R+ + G
Sbjct: 87 EARRATQKDRETFG----EKFGDRYVRVYPTLDSDIPDMQA-APNGVQLVVRSDNKPTGE 141
Query: 164 KDSAVHT-------GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
KD V + G+L+++G+PF A D+ FF ++ + + + M++DGRPTG AF
Sbjct: 142 KDHKVFSEKFGDRYGVLKMKGIPFKATAMDVRKFFANYKIKPEGVSFIMHADGRPTGMAF 201
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELF 244
+EF +++ AM KDR G Y + F
Sbjct: 202 IEFETPQEAVRAMEKDRAKFGPEYGDRF 229
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+++++GLPF K+DI+ FF F L + + + + DGRP GEAFV F N+++++ A K
Sbjct: 35 VVKMKGLPFKGSKEDIIKFFAGFSLRTEHVFLRKHPDGRPNGEAFVVFENSDEARRATQK 94
Query: 232 DRMTLGS----RYIELFPS 246
DR T G RY+ ++P+
Sbjct: 95 DRETFGEKFGDRYVRVYPT 113
>gi|401410426|ref|XP_003884661.1| GL11864, related [Neospora caninum Liverpool]
gi|325119079|emb|CBZ54631.1| GL11864, related [Neospora caninum Liverpool]
Length = 503
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 20/221 (9%)
Query: 45 PAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFH---GLDIVDVLF-VHKNNKFTGEAFC 100
P+ G P VVRLRGLP+D E +V FF L+ +VL + + + TGEA+
Sbjct: 41 PSNGEERLAKPTFVVRLRGLPWDVQEENVVAFFKPVVALENDNVLICIGFDKRTTGEAYV 100
Query: 101 VLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS 159
L P + A++ + + +G R++EVFR+ +E+ KA D R + +I
Sbjct: 101 QLPDPGLREQAIKDLHGRLLGTRWIEVFRASEEEFQKA------DDRRKTVMAAI---SG 151
Query: 160 HDEGKDSA--VHTGILRLRGLPFSAGKDDIMDFFK---DFVLSEDSIHITMNSDGRPTGE 214
+ + D++ ++ +++LRGLP+S + +I+ FFK F + D + + + DGR +G
Sbjct: 152 NTDSLDASRRMNLNVVKLRGLPWSCSESEIVRFFKAEGGFEIHNDDVVLGVTGDGRLSGI 211
Query: 215 AFVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
AFVE + E + KA + +G R+IE++P++ E+M A
Sbjct: 212 AFVELPSPEVAEKAREVLHKKYMGRRFIEVYPATREDMQRA 252
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 157 AKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
A H G DS+ + +LRLRGLP+SA + I+ FF F ++ + T+ DGRP+GEA
Sbjct: 389 AGPHHGGMDSSNWSAQVLRLRGLPYSANEQHIVQFFNGFHMAA-ILPSTIPIDGRPSGEA 447
Query: 216 FVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+V+F +A ++ +A AK+ + R IELFPSS +EM+ A G
Sbjct: 448 YVQFVDAAEAFRAFQAKNGARMDKRMIELFPSSKQEMEFAAQGG 491
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
T ++RLRGLP+ +++++ FFK V L D++ I + D R TGEA+V+ + + A
Sbjct: 52 TFVVRLRGLPWDVQEENVVAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQA 111
Query: 229 MAKDR--MTLGSRYIELFPSSHEEMDEALSR 257
+ KD LG+R+IE+F +S EE +A R
Sbjct: 112 I-KDLHGRLLGTRWIEVFRASEEEFQKADDR 141
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQ-R 114
V+RLRGLP+ E + +FF+G + +L + + + +GEA+ + A Q +
Sbjct: 405 VLRLRGLPYSANEQHIVQFFNGFHMAAILPSTIPIDGRPSGEAYVQFVDAAEAFRAFQAK 464
Query: 115 NRQNMGRRYVEVFRSKRQE 133
N M +R +E+F S +QE
Sbjct: 465 NGARMDKRMIELFPSSKQE 483
>gi|449284112|gb|EMC90693.1| Epithelial splicing regulatory protein 1 [Columba livia]
Length = 529
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 100/192 (52%), Gaps = 22/192 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ D+A FF GL+I L ++ + GEA D ALQR
Sbjct: 149 VIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQR 208
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ +MG RY+EV+++ +++ K + GG+ + + K++ V I+R
Sbjct: 209 HKHHMGSRYIEVYKATGEDFLK--------IAGGTSNEV-----AQFLSKENQV---IVR 252
Query: 175 LRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+RGLPF+ ++++ FF ++ + D RPTG+AFV FA E ++ A+ K
Sbjct: 253 MRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNALKK 312
Query: 232 DRMTLGSRYIEL 243
+ LG R + +
Sbjct: 313 HKDLLGKRRLSV 324
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 104/210 (49%), Gaps = 11/210 (5%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF+ T +V FF V VLFV + +++ TG+AF + A
Sbjct: 250 IVRMRGLPFNVTTEEVLAFFGQHCPVTGGKEGVLFVTYPDSRPTGDAFVLFACEEYAQNA 309
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
L++++ +G+R + V + + + N S +
Sbjct: 310 LKKHKDLLGKRRLSV--TSLVFCFAQVLNRYSSTPLIPLPTPPILPVLPQQFVPPTNVRD 367
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++A +DI++F +F + +H+ +N GRP+G+AF++ +AE + AA
Sbjct: 368 CIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSAERAFLAA 427
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ T+ RY+E+F S EEM+ L G
Sbjct: 428 QKCHKKTMKDRYVEVFQCSAEEMNFVLMGG 457
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+ ++R RGLP+ + DI FFK +++ + +N+ GR GEA V F + E A
Sbjct: 146 NNAVIRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLA 205
Query: 229 MAKDRMTLGSRYIELFPSSHEE 250
+ + + +GSRYIE++ ++ E+
Sbjct: 206 LQRHKHHMGSRYIEVYKATGED 227
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ EF HG+ +V ++ + +G+AF + +
Sbjct: 368 CIRLRGLPYAATIEDILEFLGEFSTDIRTHGVHMV----LNHQGRPSGDAFIQMKSAERA 423
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
A Q+ +++ M RYVEVF+ +E + + G SP
Sbjct: 424 FLAAQKCHKKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNGLSP 466
>gi|145552659|ref|XP_001462005.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429842|emb|CAK94632.1| unnamed protein product [Paramecium tetraurelia]
Length = 441
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 10/206 (4%)
Query: 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFH----GLDIVDVLFVHKNNKFTGEAFCVLGYPL 106
S+P +++RGLPF CT+ D+ F D++ + F +N FTGEA+ +
Sbjct: 222 SKPKQQFYLKIRGLPFQCTKSDLINFLEMPRLKKDMLTMKF-QQNGLFTGEAYVQVNSIE 280
Query: 107 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKA-IANEVSDVRGGSPHRSIPRAKSHDEGKD 165
+++ ++ M RY+E+F S EY KA +N+ ++ +P + ++E +
Sbjct: 281 DLEYLRTFHKSQMDHRYLEIFNSCFDEYNKAQKSNQF--LKKINPKITSEVGNINEENEY 338
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
G+L+LRGLP+S+ + D+ FFK+ + +I + G+ G+ FV N E +
Sbjct: 339 QCQQQGVLKLRGLPWSSTEQDVRTFFKNNSKIK-TIKFLYDDTGKAKGQCFVLVKNLETA 397
Query: 226 KAAMAK-DRMTLGSRYIELFPSSHEE 250
+ K + +LGSRYIE+F + E
Sbjct: 398 EKLKQKYHKKSLGSRYIEVFICNQRE 423
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
P+ K + + L++RGLPF K D+++F + L +D + + +G TGE
Sbjct: 212 PQQKDQIQEESKPKQQFYLKIRGLPFQCTKSDLINFLEMPRLKKDMLTMKFQQNGLFTGE 271
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
A+V+ + ED + + + RY+E+F S +E ++A
Sbjct: 272 AYVQVNSIEDLEYLRTFHKSQMDHRYLEIFNSCFDEYNKA 311
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-HGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFALQR- 114
V++LRGLP+ TE DV FF + I + F++ + K G+ F VL L+ L++
Sbjct: 345 VLKLRGLPWSSTEQDVRTFFKNNSKIKTIKFLYDDTGKAKGQCF-VLVKNLETAEKLKQK 403
Query: 115 -NRQNMGRRYVEVFRSKRQEY 134
+++++G RY+EVF ++EY
Sbjct: 404 YHKKSLGSRYIEVFICNQREY 424
>gi|45709575|gb|AAH67720.1| Zgc:85960 protein [Danio rerio]
Length = 302
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 104/215 (48%), Gaps = 35/215 (16%)
Query: 66 FDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRR 122
D + FF GL+IV L V + TGEAF + AL+++++ +G R
Sbjct: 11 LDVARKRLCSFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHR 70
Query: 123 YVEVFRSKRQE---YYKAIANEVSDVR---------GGSPHRSIPRAKSHD--------- 161
Y+E+F+S R E +Y+ + R GG + + R S D
Sbjct: 71 YIEIFKSSRAEVRTHYEPPRKGMGMQRPGPYDRPSGGGRGYNGMSRGGSFDRMRRGGYGG 130
Query: 162 --------EGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 212
+G + TG + +RGLP+ A + DI +FF L+ +HI + DGR T
Sbjct: 131 GVSDGRYGDGGNFQSTTGHCVHMRGLPYRATEPDIYNFFSP--LNPVRVHIEIGPDGRVT 188
Query: 213 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
GEA VEFA ED+ AAM+KD+ + RY+ELF +S
Sbjct: 189 GEADVEFATHEDAVAAMSKDKANMQHRYVELFLNS 223
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246
+ FF + + I + ++ GR TGEAFV+FA+ + ++ A+ K + +G RYIE+F S
Sbjct: 18 LCSFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQDIAEKALKKHKERIGHRYIEIFKS 77
Query: 247 SHEEM 251
S E+
Sbjct: 78 SRAEV 82
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 150 CVHMRGLPYRATEPDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 209
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 210 ANMQHRYVELF 220
>gi|340380887|ref|XP_003388953.1| PREDICTED: RNA-binding protein 12B-like [Amphimedon queenslandica]
Length = 746
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 104/206 (50%), Gaps = 30/206 (14%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD----VLF-VHKNNKFTGEAFCVLGYPLQVDFALQ 113
VRLRGLP+ D+ +F + + D V F + + +GEA+ + V+ AL+
Sbjct: 136 VRLRGLPYSAMASDILDFLKDVQVKDGEKGVHFSFGSDGRVSGEAYVEVCSGGDVERALR 195
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
+R ++G RY+EVFR+ + ++ E ++ G++
Sbjct: 196 HDRDHLGGRYIEVFRASQNQF----EYECHPMK---------------GPGVGGRAGGVV 236
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAK 231
RLRGLP+ + +D+I DFF+ +S HITM N GR TGEAFVE + ED A+ +
Sbjct: 237 RLRGLPYGSTEDNIRDFFQGIAIS----HITMQLNESGRETGEAFVELFHEEDVDRALDR 292
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ LG RYIE+F ++ ++ R
Sbjct: 293 HKKVLGHRYIEVFRTTRSDIKPVADR 318
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 27/216 (12%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKF-TGEAFCV-LGYPLQVDFALQ 113
F V + G P + TE DV +FF + + +V F + TG + V L + A
Sbjct: 10 FYAVVVTGSPRETTEGDVRKFFEEIAVKEVKFQTDERGWRTGNSIYVQLETSKDFELACT 69
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV----- 168
R+ Q + + V V + +Y ++ S RG + + ++++G + V
Sbjct: 70 RDGQLLLSQKVGVLMISKADYERSTG---STGRGATYNNG-----AYNQGAEGGVKIEHE 121
Query: 169 ----------HTGILRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAF 216
+ +RLRGLP+SA DI+DF KD + E +H + SDGR +GEA+
Sbjct: 122 TPPTEPRPLVESYFVRLRGLPYSAMASDILDFLKDVQVKDGEKGVHFSFGSDGRVSGEAY 181
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 252
VE + D + A+ DR LG RYIE+F +S + +
Sbjct: 182 VEVCSGGDVERALRHDRDHLGGRYIEVFRASQNQFE 217
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD--GRPTGEAFVEFANAEDSKAAM 229
+R+RGLP+SA + +I DFF V +T+ D GR +GE VEF ED+ AM
Sbjct: 585 CVRMRGLPYSASEREIFDFFSPLV----PFRVTLEKDTYGRASGEGEVEFCTHEDAVNAM 640
Query: 230 AKDRMTLGSRYIELF 244
KDR +GSRY+ELF
Sbjct: 641 KKDRGHIGSRYVELF 655
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD--GRPTGEAFVEFANAEDSKAAM 229
+R+RGLP+SA + +I DFF V +T+ D GR +GE VEF ED+ AM
Sbjct: 398 CVRMRGLPYSASEREIFDFFSPLV----PFRVTLEKDTYGRASGEGEVEFCTHEDAVNAM 453
Query: 230 AKDR 233
KDR
Sbjct: 454 KKDR 457
>gi|339253438|ref|XP_003371942.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316967723|gb|EFV52113.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 505
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 38/236 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFF----HGLDIVD----VLFVHK-NNKFTGEAFCVLGYPLQV 108
++R+RGLP+DCT + EFF +G+ + ++FV+K + + TG+AF ++
Sbjct: 51 IIRMRGLPYDCTAKRIMEFFESGENGVKVAGGESGIMFVNKADGRATGDAFVLIASEEDA 110
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIAN--EVSDV----------RGGSPHR-SIP 155
AL ++++ +G RY+E+FRS E + I EV+ + G P R +IP
Sbjct: 111 QKALSKHKEVIGSRYIELFRSTSAEVQQVINKSLEVAKIDLNTMPTVGLLGSLPPRGAIP 170
Query: 156 R---AKSHDEGKDSAVHTG----ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMN 206
+ A TG +RLRGLP+ A I++F +F + +H+ N
Sbjct: 171 TPVPGQIQPILPPQAFITGCRKDCVRLRGLPYEAEVQHILEFLGEFSKHIVLQGVHMVYN 230
Query: 207 SDGRPTGEAFVEFANAEDSKAAMAKDR----MTLG--SRYIELFPSSHEEMDEALS 256
+ G P+GEAF++ +++ + A A DR M G RYIE+F S ++M+ L+
Sbjct: 231 AQGNPSGEAFIQM-DSDIAAATTAADRHNKYMHTGKKQRYIEVFQCSADDMNLVLA 285
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKD------FVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
I+R+RGLP+ IM+FF+ E I +DGR TG+AFV A+ E
Sbjct: 49 VAIIRMRGLPYDCTAKRIMEFFESGENGVKVAGGESGIMFVNKADGRATGDAFVLIASEE 108
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
D++ A++K + +GSRYIELF S+ E+ + +++
Sbjct: 109 DAQKALSKHKEVIGSRYIELFRSTSAEVQQVINK 142
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 175 LRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEF-ANAEDSKAAMAKD 232
LRGLPF+ D++ FF+ F ++ D IH+ +G+ GEA + F + E +A +
Sbjct: 430 LRGLPFNVTPTDVLSFFQGFPEITMDCIHLQRAPNGQLNGEAIILFQSRMEAERAVIECS 489
Query: 233 RMTLGSRYIELF 244
R G+R IE+F
Sbjct: 490 RQLFGNRPIEMF 501
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 31 YGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVH- 89
Y +PP S Y P G +QPP PV+ LRGLPF+ T DV FF G + + +H
Sbjct: 404 YPSPPVSPTNYFASP--GQANQPP-TPVL-LRGLPFNVTPTDVLSFFQGFPEITMDCIHL 459
Query: 90 ---KNNKFTGEAFCVLGYPLQVDFA-LQRNRQNMGRRYVEVF 127
N + GEA + ++ + A ++ +RQ G R +E+F
Sbjct: 460 QRAPNGQLNGEAIILFQSRMEAERAVIECSRQLFGNRPIEMF 501
>gi|410041428|ref|XP_003950996.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H2-like [Pan troglodytes]
Length = 442
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFF-----HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
VV+++GL + C+ +V F +G + ++ + + +GEAF L + A
Sbjct: 11 VVKVQGLSWSCSADEVMHFSDCKIQNGTSGICFIYTGEG-RPSGEAFVELESADEAKLA- 68
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
++R+ MG RYVEVF+S E + VS G S D D G
Sbjct: 69 XKDRETMGHRYVEVFKSNSVE-----MDWVSKHTG---------LNSPDTAND-----GF 109
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ LRGLPF K++I+ FF + + I + ++ GR TGEAFV+ A+ E ++ A+ K
Sbjct: 110 VWLRGLPFGCXKEEIVHFFSGLEIVPNGITLXVDFQGRSTGEAFVQLASQEIAEMALKKH 169
Query: 233 RMTLGSRYIELFPSSHEEM 251
R +G RYIE+F +S E+
Sbjct: 170 RERIGHRYIEIFXNSQAEV 188
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+++++GL +S D++M F + + S I +GRP+GEAFVE +A+++K A
Sbjct: 11 VVKVQGLSWSCSADEVMHFSDCKIQNGTSGICFIYTGEGRPSGEAFVELESADEAKLA-X 69
Query: 231 KDRMTLGSRYIELFPSSHEEMD 252
KDR T+G RY+E+F S+ EMD
Sbjct: 70 KDRETMGHRYVEVFKSNSVEMD 91
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V LRGLPF C + ++ FF GL+IV L V + TGEAF L + AL+++
Sbjct: 110 VWLRGLPFGCXKEEIVHFFSGLEIVPNGITLXVDFQGRSTGEAFVQLASQEIAEMALKKH 169
Query: 116 RQNMGRRYVEVFRSKRQEYY 135
R+ +G RY+E+F + + E +
Sbjct: 170 RERIGHRYIEIFXNSQAEVH 189
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 147 GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206
G S HR S VHT RGLP+ A K+ +F+ L +HI +
Sbjct: 267 GMSDHRYGDSGSSFQSTTGHCVHT-----RGLPYRATKNXY-NFYSPLNLMR--VHIEIG 318
Query: 207 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
D R TG A VEFA ED+ AAMAKD+ + RY+E+F
Sbjct: 319 HDDRVTGRADVEFAAHEDAVAAMAKDKANMQHRYMEIF 356
>gi|221483341|gb|EEE21660.1| RNA recognition motif-containing protein, putative [Toxoplasma
gondii GT1]
Length = 508
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 118/210 (56%), Gaps = 24/210 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH---GLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQ 113
VVRLRGLP+D E +V FF L+ +VL + + + TGEA+ L P + A++
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAIK 112
Query: 114 -RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA--VHT 170
+ + +G R++EVFR+ +E+ KA D R + +I + + D++ ++
Sbjct: 113 DLHGRLLGTRWIEVFRASEEEFQKA------DDRRKTVMAAI---SGNTDSLDASRRMNL 163
Query: 171 GILRLRGLPFSAGKDDIMDFFK---DFVLSEDSIHITMNSDGRPTGEAFVEFAN---AED 224
+++LRGLP+S +++I+ FFK F + D + + + DGR +G AFVE + AE
Sbjct: 164 NVVKLRGLPWSCSENEIVRFFKAEGGFDIHSDDVVLGVTGDGRLSGIAFVELPSPDVAEK 223
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
++ + K M G R+IE++P++ E+M A
Sbjct: 224 AREVLHKKYM--GRRFIEVYPATREDMQRA 251
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
Query: 157 AKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
A H G D+A + +LRLRGLP+SA + I+ FF F ++ + T+ DGRP+GEA
Sbjct: 394 AGPHHGGMDTANWSAQVLRLRGLPYSANEQHIVQFFHGFHMAA-ILPSTIPIDGRPSGEA 452
Query: 216 FVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+V+F +A ++ +A AK+ + R IELFPSS +EM+ A G
Sbjct: 453 YVQFVDAAEALRAFQAKNGGRMDKRMIELFPSSKQEMEFAAQGG 496
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++RLRGLP+ +++++ FFK V L D++ I + D R TGEA+V+ + + A+
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAI- 111
Query: 231 KDR--MTLGSRYIELFPSSHEEMDEALSR 257
KD LG+R+IE+F +S EE +A R
Sbjct: 112 KDLHGRLLGTRWIEVFRASEEEFQKADDR 140
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQ-R 114
V+RLRGLP+ E + +FFHG + +L + + + +GEA+ + A Q +
Sbjct: 410 VLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPIDGRPSGEAYVQFVDAAEALRAFQAK 469
Query: 115 NRQNMGRRYVEVFRSKRQE 133
N M +R +E+F S +QE
Sbjct: 470 NGGRMDKRMIELFPSSKQE 488
>gi|237839439|ref|XP_002369017.1| RRM domain-containing protein [Toxoplasma gondii ME49]
gi|211966681|gb|EEB01877.1| RRM domain-containing protein [Toxoplasma gondii ME49]
Length = 513
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 118/210 (56%), Gaps = 24/210 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH---GLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQ 113
VVRLRGLP+D E +V FF L+ +VL + + + TGEA+ L P + A++
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAIK 112
Query: 114 -RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA--VHT 170
+ + +G R++EVFR+ +E+ KA D R + +I + + D++ ++
Sbjct: 113 DLHGRLLGTRWIEVFRASEEEFQKA------DDRRKTVMAAI---SGNTDSLDASRRMNL 163
Query: 171 GILRLRGLPFSAGKDDIMDFFK---DFVLSEDSIHITMNSDGRPTGEAFVEFAN---AED 224
+++LRGLP+S +++I+ FFK F + D + + + DGR +G AFVE + AE
Sbjct: 164 NVVKLRGLPWSCSENEIVRFFKAEGGFDIHSDDVVLGVTGDGRLSGIAFVELPSPDVAEK 223
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
++ + K M G R+IE++P++ E+M A
Sbjct: 224 AREVLHKKYM--GRRFIEVYPATREDMQRA 251
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 157 AKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
A H D+A + +LRLRGLP+SA + I+ FF F ++ + T+ DGRP+GEA
Sbjct: 399 AGPHHGSMDTANWSAQVLRLRGLPYSANEQHIVQFFHGFHMAA-ILPSTIPIDGRPSGEA 457
Query: 216 FVEFANAEDS-KAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+V+F +A ++ +A AK+ + R IELFPSS +EM+ A G
Sbjct: 458 YVQFVDAAEALRAFQAKNGGRMDKRMIELFPSSKQEMEFAAQGG 501
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++RLRGLP+ +++++ FFK V L D++ I + D R TGEA+V+ + + A+
Sbjct: 53 VVRLRGLPWDVQEENVIAFFKPVVALENDNVLICIGFDKRTTGEAYVQLPDPGLREQAI- 111
Query: 231 KDR--MTLGSRYIELFPSSHEEMDEALSR 257
KD LG+R+IE+F +S EE +A R
Sbjct: 112 KDLHGRLLGTRWIEVFRASEEEFQKADDR 140
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVL--FVHKNNKFTGEAFCVLGYPLQVDFALQ-R 114
V+RLRGLP+ E + +FFHG + +L + + + +GEA+ + A Q +
Sbjct: 415 VLRLRGLPYSANEQHIVQFFHGFHMAAILPSTIPIDGRPSGEAYVQFVDAAEALRAFQAK 474
Query: 115 NRQNMGRRYVEVFRSKRQE 133
N M +R +E+F S +QE
Sbjct: 475 NGGRMDKRMIELFPSSKQE 493
>gi|159486121|ref|XP_001701092.1| heterogeneous nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158271986|gb|EDO97794.1| heterogeneous nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 295
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Query: 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
P FP VRLRGLPFD E D+ F L+ VD++ V ++ +F+GEAF V+G QV+ A+
Sbjct: 24 PDGFPCVRLRGLPFDVMEGDIKMFLE-LEPVDIVMVKRDGRFSGEAFVVVGNLQQVEAAM 82
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIAN 140
++RQ +G+R++E+F +++++YY+A+AN
Sbjct: 83 TKHRQFIGQRFIEIFPAQKRDYYRAVAN 110
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLS---EDSIHITMNSDG-RPTGEAFVEFANAEDS 225
T L+LRGLPF+A DDI+ FF D L D + M +DG RPTG A V+F +
Sbjct: 197 TTWLKLRGLPFAAVPDDIIAFFDDPSLGIPRLDPSRVHMWTDGGRPTGMALVQFNTPAEV 256
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A AKD+ +G+RY+E+FP++ ++D+ ++R
Sbjct: 257 SMARAKDKQLMGTRYVEIFPATRGDLDKFMAR 288
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+RLRGLPF + DI K F+ E + + DGR +GEAFV N + +AAM K
Sbjct: 30 VRLRGLPFDVMEGDI----KMFLELEPVDIVMVKRDGRFSGEAFVVVGNLQQVEAAMTKH 85
Query: 233 RMTLGSRYIELFPSSHEEMDEALS 256
R +G R+IE+FP+ + A++
Sbjct: 86 RQFIGQRFIEIFPAQKRDYYRAVA 109
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 59 VRLRGLPFDCTEVDVAEFFH----GLDIVDVLFVH---KNNKFTGEAFCVLGYPLQVDFA 111
++LRGLPF D+ FF G+ +D VH + TG A P +V A
Sbjct: 200 LKLRGLPFAAVPDDIIAFFDDPSLGIPRLDPSRVHMWTDGGRPTGMALVQFNTPAEVSMA 259
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIA 139
+++Q MG RYVE+F + R + K +A
Sbjct: 260 RAKDKQLMGTRYVEIFPATRGDLDKFMA 287
>gi|339245667|ref|XP_003374467.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316972254|gb|EFV55937.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 370
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 111/273 (40%), Gaps = 87/273 (31%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVH----KNNKFTGEAFCVLGYPLQVDFALQ 113
VVR+RGLP+ E D+ +FFH D D++ +H K + +GEA+ G VD AL+
Sbjct: 9 VVRVRGLPWSSKEEDIRKFFH--DCSDIIGIHFTYSKEGRPSGEAYLEFGSADDVDKALR 66
Query: 114 ----------------------------------------RNRQNMGRRYVEVFRSKRQE 133
R+ + +G RY+EVFRS +E
Sbjct: 67 HHHISDSIDDIRFGQDNSGRASGEGFVRFSNKEATERALDRHMEKIGHRYIEVFRSSMEE 126
Query: 134 YYKAIAN----------------------EVSDVRGGSPHRSI-----------PRAKSH 160
+ + + RGG P PR +
Sbjct: 127 MDRVTRRPQHMAGWGDGGGRIVDHDRGYYDTAGYRGGGPGSMYNDDFFTSSPINPRGGYY 186
Query: 161 DEGKD------SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214
D+G L +RGLP+ A +DIM+FF + + ++ I + RPTGE
Sbjct: 187 DQGASFGGRMGGRGAGFALHMRGLPYKATANDIMEFF--YPIKIMNVRILFDERNRPTGE 244
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
A VEF D+ A+ KDR T+G RYIELF ++
Sbjct: 245 ADVEFQCESDALEALKKDRKTMGERYIELFINT 277
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 41/126 (32%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-- 229
++R+RGLP+S+ ++DI FF D IH T + +GRP+GEA++EF +A+D A+
Sbjct: 9 VVRVRGLPWSSKEEDIRKFFHD-CSDIIGIHFTYSKEGRPSGEAYLEFGSADDVDKALRH 67
Query: 230 ------------------------------------AKDRMT--LGSRYIELFPSSHEEM 251
A DR +G RYIE+F SS EEM
Sbjct: 68 HHISDSIDDIRFGQDNSGRASGEGFVRFSNKEATERALDRHMEKIGHRYIEVFRSSMEEM 127
Query: 252 DEALSR 257
D R
Sbjct: 128 DRVTRR 133
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 27/131 (20%)
Query: 22 RLIDQGPSFYGTP------PSSSFMYNPP--------PAYGYVSQPPPFP---------- 57
R++D +Y T P S MYN P GY Q F
Sbjct: 146 RIVDHDRGYYDTAGYRGGGPGS--MYNDDFFTSSPINPRGGYYDQGASFGGRMGGRGAGF 203
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
+ +RGLP+ T D+ EFF+ + I++V + + N+ TGEA AL+++R
Sbjct: 204 ALHMRGLPYKATANDIMEFFYPIKIMNVRILFDERNRPTGEADVEFQCESDALEALKKDR 263
Query: 117 QNMGRRYVEVF 127
+ MG RY+E+F
Sbjct: 264 KTMGERYIELF 274
>gi|66361862|ref|XP_627895.1| CG8205/fusilli (animal)- like, 2x RRM domains, involved in RNA
metabolism [Cryptosporidium parvum Iowa II]
gi|46227584|gb|EAK88519.1| CG8205/fusilli (animal)- like, 2x RRM domains, involved in RNA
metabolism [Cryptosporidium parvum Iowa II]
Length = 569
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 112/212 (52%), Gaps = 20/212 (9%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVHKNNKFTGEAFCVL----GYPLQV 108
PVVRLRGLP+ +D+ FF+ + + + +K+ K TGEA+ +L Y L +
Sbjct: 316 PVVRLRGLPWKAAVLDIIAFFNPICRISSYDIAISYNKDGKMTGEAYVLLPSIKAYELSL 375
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
+ + MG+R++EV S +E+ I +++ ++ + + P + ++ D
Sbjct: 376 TLL---HGKRMGKRWIEVLPSSTKEFL--ICLQITSLKKQNQN---PSIFNDNKIIDRYY 427
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+ +LRLRGLP+S + +I+ FF + L+ + + + + R +GEA++ + D+
Sbjct: 428 NRSVLRLRGLPWSTTEIEIVQFFISGGIYGLNASDVFLGITENQRASGEAWIILPHKCDA 487
Query: 226 -KAAMAKDRMTLGSRYIELFPSSHEEMDEALS 256
A +R +G RYIE+F SS +E+ A S
Sbjct: 488 FDAQRILNRRVIGKRYIEVFISSFQELTTARS 519
>gi|312070751|ref|XP_003138291.1| hypothetical protein LOAG_02706 [Loa loa]
Length = 224
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 18/167 (10%)
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
GEA Q + AL+R+R + RY+EV+R+ R ++ + A S+ R +
Sbjct: 14 NGEALVRFEDSEQRELALRRHRHFLHNRYIEVYRATRNDFLQIAAGSNSE-----AVRFV 68
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD----FVLSEDSIHITMNSDGR 210
R G A+ I+R+RGLP+ + I++FF + +++ I SDGR
Sbjct: 69 SR------GSTGAM---IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGR 119
Query: 211 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
PTG+AFV F + E + A+ K + T+G+RYIELF S+ E+ + ++R
Sbjct: 120 PTGDAFVMFDSEEAGQKALTKHKRTIGTRYIELFRSTQAEVQQVVNR 166
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 26/153 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFF----HGLDIVD--VLFVHKNN-KFTGEAFCVLGYPLQVDF 110
+VR+RGLP+DCTE + EFF +G + D +LFV+K++ + TG+AF +
Sbjct: 77 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDSEEAGQK 136
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
AL ++++ +G RY+E+FRS + E + + + + R I S +
Sbjct: 137 ALTKHKRTIGTRYIELFRSTQAEVQQVVNRNLEN-----DQRMIVHGSSRKD-------- 183
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
+RLRGLP+ A ++I++F L E + HI
Sbjct: 184 -CIRLRGLPYEAHVENIVEF-----LGETARHI 210
>gi|393909284|gb|EFO25784.2| hypothetical protein LOAG_02706 [Loa loa]
Length = 229
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 18/167 (10%)
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSI 154
GEA Q + AL+R+R + RY+EV+R+ R ++ + A S+ R +
Sbjct: 19 NGEALVRFEDSEQRELALRRHRHFLHNRYIEVYRATRNDFLQIAAGSNSE-----AVRFV 73
Query: 155 PRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD----FVLSEDSIHITMNSDGR 210
R G A+ I+R+RGLP+ + I++FF + +++ I SDGR
Sbjct: 74 SR------GSTGAM---IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGR 124
Query: 211 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
PTG+AFV F + E + A+ K + T+G+RYIELF S+ E+ + ++R
Sbjct: 125 PTGDAFVMFDSEEAGQKALTKHKRTIGTRYIELFRSTQAEVQQVVNR 171
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 26/153 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFF----HGLDIVD--VLFVHKNN-KFTGEAFCVLGYPLQVDF 110
+VR+RGLP+DCTE + EFF +G + D +LFV+K++ + TG+AF +
Sbjct: 82 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDSEEAGQK 141
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
AL ++++ +G RY+E+FRS + E + + + + R I S +
Sbjct: 142 ALTKHKRTIGTRYIELFRSTQAEVQQVVNRNLEN-----DQRMIVHGSSRKD-------- 188
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
+RLRGLP+ A ++I++F L E + HI
Sbjct: 189 -CIRLRGLPYEAHVENIVEF-----LGETARHI 215
>gi|328707990|ref|XP_001948909.2| PREDICTED: RNA-binding protein fusilli-like [Acyrthosiphon pisum]
Length = 571
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 109/243 (44%), Gaps = 44/243 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD--------VLFVHK-NNKFTGEAFCVLGYPLQV 108
+VR+RGLP+ CT DV FF + VLFV K + + TG AF +
Sbjct: 90 IVRMRGLPYYCTAKDVITFFENGEQTSSVMYGEEGVLFVKKPDGRATGYAFVLFADEDDA 149
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYK--------AIANEVSDVRGG------------ 148
AL ++R MG RY+E+ R + E + ++ + SD G
Sbjct: 150 CKALSKHRDLMGTRYIELIRCTKAEVQQFLNRGMDQSVRSTASDSIGNITIPVTTTAGVN 209
Query: 149 -SPHR---SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF----KDFVLSEDS 200
SP +P S + +RLRGLP+ A + I+ F K+ V
Sbjct: 210 NSPTALLGHVPLLPLPQHVITSGIRKDCIRLRGLPYEANVEHILKFLGEHSKNIVF--HG 267
Query: 201 IHITMNSDGRPTGEAFVEFAN-AEDSKAAMAKDR--MTLGS--RYIELFPSSHEEMDEAL 255
+HI NS G +GEAF++ N ++A MAK+ ++ G RYI+LF S E+M L
Sbjct: 268 VHIVYNSVGHASGEAFIQMNNEGSAAQAVMAKNHKYISFGKKRRYIKLFQCSGEDMHLVL 327
Query: 256 SRG 258
+ G
Sbjct: 328 TGG 330
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 85 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSD 144
L + + + GEA D A +R+ ++G RY+EV+++ +++ S+
Sbjct: 19 TLCLSAHGRCNGEAVVRFVNQEHRDMATKRHNHHIGSRYIEVYKANGEDFINVAGGNSSE 78
Query: 145 VRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD------FVLSE 198
V + +H I+R+RGLP+ D++ FF++ + E
Sbjct: 79 VE------TFLAKGAH----------AIVRMRGLPYYCTAKDVITFFENGEQTSSVMYGE 122
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + DGR TG AFV FA+ +D+ A++K R +G+RYIEL + E+ + L+RG
Sbjct: 123 EGVLFVKKPDGRATGYAFVLFADEDDACKALSKHRDLMGTRYIELIRCTKAEVQQFLNRG 182
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 189 DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248
D K ++ + + +++ GR GEA V F N E A + +GSRYIE++ ++
Sbjct: 6 DHEKKHIICVGGVTLCLSAHGRCNGEAVVRFVNQEHRDMATKRHNHHIGSRYIEVYKANG 65
Query: 249 EE 250
E+
Sbjct: 66 ED 67
>gi|302839324|ref|XP_002951219.1| hypothetical protein VOLCADRAFT_117772 [Volvox carteri f.
nagariensis]
gi|300263548|gb|EFJ47748.1| hypothetical protein VOLCADRAFT_117772 [Volvox carteri f.
nagariensis]
Length = 245
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 103/200 (51%), Gaps = 14/200 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNR 116
+++L+GLP+ TE D+ +FF ++ V FV++ + + +G AF + AL +N
Sbjct: 43 ILKLKGLPYSATENDIRQFFAPYELKGVSFVYEPDGRPSGLAFAEFVSKEEALKALSKNG 102
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL- 175
+ +G+RYV + R E + + + G + +S + TG L+L
Sbjct: 103 EYIGQRYVRLLHVPRAEMEEQVRLGTLAIPGAAAKLRSRMMRSQQRNSAVYMATGPLQLV 162
Query: 176 -----------RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
RGLP+ + +I+ FF+ + D++ I ++ GRP+GEA++ F++ ++
Sbjct: 163 PTTATSPTIKIRGLPYGSSPTEILAFFQTYHYLPDTLQIGLDQLGRPSGEAWLSFSSPQE 222
Query: 225 S-KAAMAKDRMTLGSRYIEL 243
+ +A +R LG+RY+EL
Sbjct: 223 ALRAVRDLNRHYLGTRYLEL 242
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 10/123 (8%)
Query: 136 KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 195
+A+ + G +P + R + D+ + IL+L+GLP+SA ++DI FF +
Sbjct: 15 QAVGTGANSFPGAAPE--VARQRQADQS------SAILKLKGLPYSATENDIRQFFAPYE 66
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
L + DGRP+G AF EF + E++ A++K+ +G RY+ L EM+E +
Sbjct: 67 L--KGVSFVYEPDGRPSGLAFAEFVSKEEALKALSKNGEYIGQRYVRLLHVPRAEMEEQV 124
Query: 256 SRG 258
G
Sbjct: 125 RLG 127
>gi|260797907|ref|XP_002593942.1| hypothetical protein BRAFLDRAFT_234856 [Branchiostoma floridae]
gi|229279174|gb|EEN49953.1| hypothetical protein BRAFLDRAFT_234856 [Branchiostoma floridae]
Length = 678
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 7/202 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ L+GLP+ + DV +FF GL I V ++ K G F AL+ +++
Sbjct: 306 CISLKGLPYTAKDKDVRDFFKGLGIRKVWIDFEDGKAIGSGFVEFKSYGDQKAALRMHKK 365
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS--PHRSIPRAKSHDEGKDSAVHTGILRL 175
MG RY+EV + + K I + + GS P + K D +H +
Sbjct: 366 YMGSRYIEVTSAPSTDMQKHIQKFHTKPKKGSKSPGKEAKTTKELDPRAKCCMH-----V 420
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 235
LP+ A K +I +FF ++E IH+ G +GE FVEF + D A
Sbjct: 421 WNLPYKASKREIENFFTGSTIAERGIHMVYTKTGEFSGEVFVEFVSISDCDRAYKLRAKR 480
Query: 236 LGSRYIELFPSSHEEMDEALSR 257
LG R L P S EEM + ++R
Sbjct: 481 LGGRMALLRPISREEMRDRMAR 502
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP+SA DI FF + + +HI G G+AF+ FA+ ED++ AMA+
Sbjct: 4 VIRLQGLPWSASAMDIRSFFSGLTIPDGGVHIV----GGDAGDAFIIFASDEDARQAMAR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
T+ I L+ SS +EM + ++ R
Sbjct: 60 TGNTIHGSPITLYLSSRKEMQDRINMSR 87
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 35/231 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP+ + +D+ FF GL I D VH G+AF + A+ R
Sbjct: 4 VIRLQGLPWSASAMDIRSFFSGLTIPDG-GVHIVGGDAGDAFIIFASDEDARQAMARTGN 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVS---DVRGGSPHRSIPRAKSHDEGKDSAVHTG--- 171
+ + ++ S R+E I S D ++ + +S G + G
Sbjct: 63 TIHGSPITLYLSSRKEMQDRINMSRSTTFDSPAPVATGNVEKTQSPAFGSRNVAPNGSSY 122
Query: 172 ----------------------------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
++L GL + +I F ++ D I I
Sbjct: 123 APPPVQESSYSSMSSSSYNSSQFSAAQTCIQLFGLNTNVTVSEIHSLFSGLEIASDGIVI 182
Query: 204 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
M+ G TG+AFV+F + D AA+ + L +R+IE+ + + A
Sbjct: 183 EMDPFGNKTGKAFVKFKSVRDCSAAVRTYKEYLAARHIEVMSCTESQWQIA 233
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
I+ ++ LP +A ++I+DFF + + +DS+HI + G PTG A V F +D+ A
Sbjct: 603 IVGIQNLPMTATMEEILDFFYGYPVLKDSVHIHRSDRGDPTGNASVAFPTPQDAMIA 659
>gi|84043632|ref|XP_951606.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma brucei
TREU927]
gi|33348520|gb|AAQ15845.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|62359177|gb|AAX79621.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
brucei]
Length = 487
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 95/198 (47%), Gaps = 36/198 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
V+RL GLP+ E + EFF + D V FV ++ TG F L A+
Sbjct: 25 VLRLYGLPYSIKEEKIREFFGSFSLADEEPIVFFVEGLHRGTG--FVRLRNAEDAALAIN 82
Query: 114 R-NRQNMGR-RYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
R +RQN+ RYVE+ S +E + + E ++ +
Sbjct: 83 RLHRQNIDETRYVEISTSSEEERQRIM-----------------------EQQEQSNKAC 119
Query: 172 ILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+LRLRGLPF+A +DD+ F + VLS I I + DGR TG+AF+E A+ ED K
Sbjct: 120 VLRLRGLPFAATEDDVRTFIESMEGVLS---IDICRDMDGRNTGDAFIELASEEDVKRVK 176
Query: 230 AKDRMTLGSRYIELFPSS 247
+G+RYIE+ PS+
Sbjct: 177 LLHSKAMGNRYIEVLPST 194
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R+RG+P+SA ++ I +FF + +H+ + R TGEAFVE + D A+ +
Sbjct: 387 VVRIRGVPYSASEEAIAEFFAGVKIPPQGVHMVYDERNRLTGEAFVEVEDRNDVLLALDR 446
Query: 232 DRMTLGSRYIELFPSS 247
+ +G+RYIE+F SS
Sbjct: 447 NGAMMGTRYIEVFESS 462
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQ 107
QP PF VVR+RG+P+ +E +AEFF G+ I V +++ + N+ TGEAF +
Sbjct: 382 QPSPF-VVRIRGVPYSASEEAIAEFFAGVKIPPQGVHMVY-DERNRLTGEAFVEVEDRND 439
Query: 108 VDFALQRNRQNMGRRYVEVFRS 129
V AL RN MG RY+EVF S
Sbjct: 440 VLLALDRNGAMMGTRYIEVFES 461
>gi|261326510|emb|CBH09471.1| heterogeneous nuclear ribonucleoprotein H/F,putative [Trypanosoma
brucei gambiense DAL972]
Length = 488
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 95/198 (47%), Gaps = 36/198 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
V+RL GLP+ E + EFF + D V FV ++ TG F L A+
Sbjct: 26 VLRLYGLPYSIKEEKIREFFGSFSLADEEPIVFFVEGLHRGTG--FVRLRNAEDAALAIN 83
Query: 114 R-NRQNMGR-RYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
R +RQN+ RYVE+ S +E + + E ++ +
Sbjct: 84 RLHRQNIDETRYVEISTSSEEERQRIM-----------------------EQQEQSNKVC 120
Query: 172 ILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+LRLRGLPF+A +DD+ F + VLS I I + DGR TG+AF+E A+ ED K
Sbjct: 121 VLRLRGLPFAATEDDVRTFIESMEGVLS---IDICRDMDGRNTGDAFIELASEEDVKRVK 177
Query: 230 AKDRMTLGSRYIELFPSS 247
+G+RYIE+ PS+
Sbjct: 178 LLHSKAMGNRYIEVLPST 195
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R+RG+P+SA ++ I +FF + +H+ + R TGEAFVE + D A+ +
Sbjct: 388 VVRIRGVPYSASEEAIAEFFAGVKIPPQGVHMVYDERNRLTGEAFVEVEDRNDVLLALDR 447
Query: 232 DRMTLGSRYIELFPSS 247
+ +G+RYIE+F SS
Sbjct: 448 NGAMMGTRYIEVFESS 463
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQ 107
QP PF VVR+RG+P+ +E +AEFF G+ I V +++ + N+ TGEAF +
Sbjct: 383 QPSPF-VVRIRGVPYSASEEAIAEFFAGVKIPPQGVHMVY-DERNRLTGEAFVEVEDRND 440
Query: 108 VDFALQRNRQNMGRRYVEVFRS 129
V AL RN MG RY+EVF S
Sbjct: 441 VLLALDRNGAMMGTRYIEVFES 462
>gi|351695486|gb|EHA98404.1| Heterogeneous nuclear ribonucleoprotein F [Heterocephalus glaber]
Length = 348
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 19/142 (13%)
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
AL+ +R++MG RY+EVF S E + + + D S D K
Sbjct: 1 MALKNDRESMGHRYLEVFESHGTETDRVLKHSGPD--------------SADSAKG---- 42
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
G +RLRGLPF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+
Sbjct: 43 -GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKAL 101
Query: 230 AKDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS +E+
Sbjct: 102 RKHKERIGHRYIEVFKSSQQEV 123
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF CT+ ++ +FF GL+IV L V K TGEAF + AL+++
Sbjct: 45 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALRKH 104
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+EVF+S +QE
Sbjct: 105 KERIGHRYIEVFKSSQQE 122
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+ +RGLP+ A ++DI +FF L+ +HI + +GR TGEA VEFA E++ AAM+
Sbjct: 221 CVHMRGLPYKATENDIYNFFSP--LNAVRVHIEIRPNGRVTGEADVEFATNEEAMAAMSK 278
Query: 231 -KDRMTLGSRYIELFPSS 247
KDR + RYIELF +S
Sbjct: 279 DKDRTNIQHRYIELFLNS 296
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + N + TGEA +
Sbjct: 212 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNAVRVHIEIRPNGRVTGEADVEFATNEE 271
Query: 108 VDFALQ--RNRQNMGRRYVEVF 127
A+ ++R N+ RY+E+F
Sbjct: 272 AMAAMSKDKDRTNIQHRYIELF 293
>gi|71649626|ref|XP_813529.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma cruzi
strain CL Brener]
gi|70878421|gb|EAN91678.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 450
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 28/202 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG--LDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR- 114
VVRL GLP+ +E + FF LD D + G F L P V+ ++++
Sbjct: 55 VVRLHGLPYSVSEETIRAFFAEFELDEKDPILHFTEGLHRGTGFVRLKRPEDVEESIKKL 114
Query: 115 NRQNM-GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
+RQ++ RYVE+ S +E + + E ++ T +L
Sbjct: 115 HRQHIDANRYVELTASTEEERQRIL-----------------------EQQEQGCKTHVL 151
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
RLRGLPF++ ++D+ +F + V + I + +GR TG+AF++ A ED + A
Sbjct: 152 RLRGLPFTSTEEDLREFVRS-VPGVTRVDICRDMEGRNTGDAFIQLATEEDVEEAKQLHN 210
Query: 234 MTLGSRYIELFPSSHEEMDEAL 255
T+GSRYIE+ PS+ + D +
Sbjct: 211 KTMGSRYIEVLPSTMYDRDAIM 232
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R+RG+P++A ++ I +FF + +H+ N RPTGEAFVE N D AA+ +
Sbjct: 342 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQNRPTGEAFVELENDSDLVAALER 401
Query: 232 DRMTLGSRYIELFPSS 247
+ +G+RYIE+F SS
Sbjct: 402 NGGAMGNRYIEVFQSS 417
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 31 YGTP--PSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDI----VD 84
YG P P F P A + P VVR+RG+P+ TE +AEFF G+ I V
Sbjct: 313 YGVPGGPQPLFPMFPGHAPMVAPRAPSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGVH 372
Query: 85 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129
+++ ++ N+ TGEAF L + AL+RN MG RY+EVF+S
Sbjct: 373 MVY-NEQNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQS 416
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 140 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 199
+ ++D G P ++ +E + T ++RL GLP+S ++ I FF +F L E
Sbjct: 30 DTIADAYQGEP-------QTGEEDIPVMIETRVVRLHGLPYSVSEETIRAFFAEFELDEK 82
Query: 200 S--IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL-GSRYIELFPSSHEEMDEAL 255
+H T +G G FV ED + ++ K R + +RY+EL S+ EE L
Sbjct: 83 DPILHFT---EGLHRGTGFVRLKRPEDVEESIKKLHRQHIDANRYVELTASTEEERQRIL 139
Query: 256 SR 257
+
Sbjct: 140 EQ 141
>gi|410905475|ref|XP_003966217.1| PREDICTED: RNA-binding protein 12B-B-like [Takifugu rubripes]
Length = 627
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 107/212 (50%), Gaps = 24/212 (11%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDF--ALQRNR 116
V LRG+PF TE+DV+ FF GL ++D + + KN + ++ + D AL+R+R
Sbjct: 140 VYLRGMPFSVTEMDVSNFFDGL-LIDGIVLLKNGHGSNTGNGLVKFRSSDDTYEALKRHR 198
Query: 117 QNMGRRYVEVFRSKRQEYYKAIAN--EVSDV-----RGGSPHRS----------IPRAKS 159
Q +G RYVEV +S +Y+ + E+ D+ R SP R+ P A+
Sbjct: 199 QYIGARYVEVSKSTANYWYQHAGSLPEMVDMQANVERDRSPLRNDRNLHQQRAPSPLAQR 258
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
+ D + L L ++A K+DI + F++ L D I ++SDGR T +FV F
Sbjct: 259 SNPADDEYC----VLLENLSYTAEKEDIRNLFQNANLQNDQILHLVSSDGRRTRSSFVLF 314
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
N D A++ ++ +R++ P S E+M
Sbjct: 315 KNLHDYCEALSHEKRLFFNRWVYTRPISREKM 346
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 31/215 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD--------------VLFVHKNN---KFTGEAFC 100
V+RL+GL D+ +FF GL I D +LF + C
Sbjct: 4 VIRLQGLRITAGSEDIRKFFTGLKIPDGGVHIIGGEHDEAFILFASDEDARRAMNRSGGC 63
Query: 101 VLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYY--------KAIANEVSDVRGGSPHR 152
+ G P+Q+ + Q QN R E+ + + +++ ++V GG
Sbjct: 64 IRGSPVQLFLSSQTEMQNTLERNSEITELEEMRQFEESPRCSRRSVESDVGQRLGG---- 119
Query: 153 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 212
+ + S + S + LRG+PFS + D+ +FF ++ D I + N G T
Sbjct: 120 RLGNSPSPEPQSSSQTEDLYVYLRGMPFSVTEMDVSNFFDGLLI--DGIVLLKNGHGSNT 177
Query: 213 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
G V+F +++D+ A+ + R +G+RY+E+ S+
Sbjct: 178 GNGLVKFRSSDDTYEALKRHRQYIGARYVEVSKST 212
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GL +AG +DI FF + + +HI G EAF+ FA+ ED++ AM +
Sbjct: 4 VIRLQGLRITAGSEDIRKFFTGLKIPDGGVHII----GGEHDEAFILFASDEDARRAMNR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSR 257
+ ++LF SS EM L R
Sbjct: 60 SGGCIRGSPVQLFLSSQTEMQNTLER 85
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 6/188 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVH---KNNKFTGEAFCVLGYPLQVDFALQR 114
V L L + + D+ F ++ + +H + + T +F + AL
Sbjct: 267 CVLLENLSYTAEKEDIRNLFQNANLQNDQILHLVSSDGRRTRSSFVLFKNLHDYCEALSH 326
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ R+V R++ + + D G R PR + + + + +L
Sbjct: 327 EKRLFFNRWVYTRPISREKMIALLETQGPDEGQGDSER--PRERPPAQNRSTNSEKCVLF 384
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD-R 233
++ LPF K +IMDFF F ++ED + + + G G A V F + D+ A+A + R
Sbjct: 385 VQNLPFDVRKVEIMDFFHGFDITEDKVMLLHDHTGTGMGRALVVFQSEADATRALALNGR 444
Query: 234 MTLGSRYI 241
LGS +
Sbjct: 445 RFLGSEVM 452
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL LPF ++I DF + L S+ + G+P+G A F + +++ AMA+
Sbjct: 552 LVRLVNLPFQIRTEEIYDFCYGYRLIPGSVSLQYEQSGKPSGSATAAFESRQEAMIAMAE 611
Query: 232 -DRMTLGSRYIELF 244
+GSR ++L
Sbjct: 612 LSGRPIGSRKVQLL 625
>gi|90018164|gb|ABD83895.1| hypothetical protein [Ictalurus punctatus]
Length = 157
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLP+S D++ FF D ++ + SIH+T +GRP+GEAFVE + ++ K A+
Sbjct: 8 VVRVRGLPWSCSVDEVARFFSDCKVANNGTSIHLTYTREGRPSGEAFVELESEDELKIAL 67
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 68 KKDRETMGHRYVEVFKSNNVEMDWVL 93
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 24/160 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-----LFVHKNNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLP+ C+ +VA FF + + L + + +GEAF L ++ AL
Sbjct: 8 VVRVRGLPWSCSVDEVARFFSDCKVANNGTSIHLTYTREGRPSGEAFVELESEDELKIAL 67
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + P EG G+
Sbjct: 68 KKDRETMGHRYVEVFKSNNVEMDWVLKH------------TGPNG-PETEGD------GL 108
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 212
+RLRGLPF K++I+ FF + + I + ++ R T
Sbjct: 109 VRLRGLPFGCSKEEIVRFFSGLEIVPNGITLPVDYMWRST 148
>gi|71425877|ref|XP_813187.1| heterogeneous nuclear ribonucleoprotein H/F [Trypanosoma cruzi
strain CL Brener]
gi|70878047|gb|EAN91336.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 448
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG--LDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR- 114
VVRL GLP+ +E + FF LD D + G F L P V+ ++++
Sbjct: 53 VVRLHGLPYSVSEETIRAFFAEFELDEKDPILHFTEGLHRGTGFVRLKRPEDVEESIKKL 112
Query: 115 NRQNM-GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
+RQ++ RYVE+ S +E + + E ++ T +L
Sbjct: 113 HRQHIDANRYVELTASTEEERQRIL-----------------------EQQEQGCKTHVL 149
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
RLRGLPF++ ++D+ +F V + I + +GR TG+AF++ A ED + A
Sbjct: 150 RLRGLPFTSTEEDLREFVSS-VPGVTRVDICRDMEGRNTGDAFIQLATEEDVEEAKQLHN 208
Query: 234 MTLGSRYIELFPSSHEEMDEAL 255
T+GSRYIE+ PS+ + D +
Sbjct: 209 KTMGSRYIEVLPSTMYDRDAIM 230
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R+RG+P++A ++ I +FF + +H+ N RPTGEAFVE N D AA+ +
Sbjct: 340 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQNRPTGEAFVELENDSDLVAALER 399
Query: 232 DRMTLGSRYIELFPSS 247
+ +G+RYIE+F SS
Sbjct: 400 NGGAMGNRYIEVFQSS 415
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 31 YGTP--PSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDI----VD 84
YG P P F P A + P VVR+RG+P+ TE +AEFF G+ I V
Sbjct: 311 YGVPGGPQPLFPMFPGHAPMVAPRAPSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGVH 370
Query: 85 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129
+++ ++ N+ TGEAF L + AL+RN MG RY+EVF+S
Sbjct: 371 MVY-NEQNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQS 414
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 140 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 199
+ ++D G P ++ +E V T ++RL GLP+S ++ I FF +F L E
Sbjct: 28 DTIADAYQGEP-------QTGEEDIPVMVETRVVRLHGLPYSVSEETIRAFFAEFELDEK 80
Query: 200 S--IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL-GSRYIELFPSSHEEMDEAL 255
+H T +G G FV ED + ++ K R + +RY+EL S+ EE L
Sbjct: 81 DPILHFT---EGLHRGTGFVRLKRPEDVEESIKKLHRQHIDANRYVELTASTEEERQRIL 137
Query: 256 SR 257
+
Sbjct: 138 EQ 139
>gi|407393563|gb|EKF26660.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi marinkellei]
Length = 454
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 28/202 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG--LDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR- 114
VVRL GLP+ +E + FF LD D + G F L P V+ ++++
Sbjct: 59 VVRLHGLPYSVSEETIRAFFAEFELDENDPILHFTEGLHRGTGFVRLKKPEDVEESIKKL 118
Query: 115 NRQNM-GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
+RQ++ RYVE+ S +E + + E ++ T +L
Sbjct: 119 HRQHIDANRYVELTASTEEERQRIL-----------------------EQQEQGCKTHVL 155
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
RLRGLPF++ ++D+ +F + V + I + +GR TG+AF++ A ED + A
Sbjct: 156 RLRGLPFTSTEEDLREFVR-CVPGVTRVDICRDLEGRNTGDAFIQLATEEDVEEAKQLHN 214
Query: 234 MTLGSRYIELFPSSHEEMDEAL 255
T+GSRYIE+ PS+ + D +
Sbjct: 215 KTMGSRYIEVLPSTMYDRDAIM 236
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R+RG+P++A ++ I +FF + +H+ N RPTGEAFVE N D AA+ +
Sbjct: 346 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQNRPTGEAFVELENDSDLVAALER 405
Query: 232 DRMTLGSRYIELFPSS 247
+ +G+RYIE+F SS
Sbjct: 406 NGGAMGNRYIEVFQSS 421
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
VVR+RG+P+ TE +AEFF G+ I V +++ ++ N+ TGEAF L + AL+
Sbjct: 346 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVY-NEQNRPTGEAFVELENDSDLVAALE 404
Query: 114 RNRQNMGRRYVEVFRS 129
RN MG RY+EVF+S
Sbjct: 405 RNGGAMGNRYIEVFQS 420
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEA 215
++ +E + T ++RL GLP+S ++ I FF +F L E+ +H T +G G
Sbjct: 45 QTGEEDIPVVIETRVVRLHGLPYSVSEETIRAFFAEFELDENDPILHFT---EGLHRGTG 101
Query: 216 FVEFANAEDSKAAMAK-DRMTL-GSRYIELFPSSHEEMDEALSR 257
FV ED + ++ K R + +RY+EL S+ EE L +
Sbjct: 102 FVRLKKPEDVEESIKKLHRQHIDANRYVELTASTEEERQRILEQ 145
>gi|148233462|ref|NP_001087973.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Xenopus laevis]
gi|52138903|gb|AAH82630.1| LOC494658 protein [Xenopus laevis]
Length = 342
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 19/133 (14%)
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
MG RY+EVF+S E + + +D D DS G +RLRGL
Sbjct: 1 MGHRYIEVFKSNNTEMEWVLKHNSTD----------------DVETDS---DGTVRLRGL 41
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PF K++I+ FF + + I +T++ GR TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCSKEEIVQFFSGLRIVPNGITLTVDYQGRSTGEAFVQFASKEIAENALGKHKERIGH 101
Query: 239 RYIELFPSSHEEM 251
RYIE+F SS E+
Sbjct: 102 RYIEIFKSSRGEI 114
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
Query: 151 HRSIPRAKSHDEGKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209
+R + +A + + H+G + +RGLPF A + DI +FF L+ +HI + +DG
Sbjct: 190 NRGMTQAYAGAGDGSAGFHSGHFVHMRGLPFRASESDIANFFSP--LTPIRVHIDVGADG 247
Query: 210 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
R TGEA VEFA ED+ AAM+KD+ + RYIELF +S
Sbjct: 248 RATGEADVEFATHEDAVAAMSKDKNNMQHRYIELFLNS 285
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL IV L V + TGEAF + AL +
Sbjct: 35 TVRLRGLPFGCSKEEIVQFFSGLRIVPNGITLTVDYQGRSTGEAFVQFASKEIAENALGK 94
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S R E
Sbjct: 95 HKERIGHRYIEIFKSSRGE 113
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF +E D+A FF L + V + V + + TGEA A+ +++
Sbjct: 213 VHMRGLPFRASESDIANFFSPLTPIRVHIDVGADGRATGEADVEFATHEDAVAAMSKDKN 272
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 273 NMQHRYIELF 282
>gi|241339179|ref|XP_002408443.1| splicing factor hnRNP-F, putative [Ixodes scapularis]
gi|215497357|gb|EEC06851.1| splicing factor hnRNP-F, putative [Ixodes scapularis]
Length = 293
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 104/210 (49%), Gaps = 36/210 (17%)
Query: 66 FDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVE 125
F EV++ G+ + + + + +GEA+ L V+ LQR+ +++G RY+E
Sbjct: 12 FTSKEVNIKGGISGVHMT----LSREGRPSGEAYIELESEQDVEVGLQRHNEHIGHRYIE 67
Query: 126 VFRSKRQEYYKAI----ANEVSDVRGGSPH-RSIPRAKSHDE------------------ 162
VF+SKR E + A++ + G R +P S +E
Sbjct: 68 VFKSKRSEMDWVVKRSGAHQQDSLNDGCVRLRGLPFGCSKEEIAQFFSGFVEEDGYGDFG 127
Query: 163 ----GKDSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
+ SA TG + +RGLPF A + DI +FF+ ++ ++H+ GRP+GE V
Sbjct: 128 GSGGARYSA--TGHFVHMRGLPFRATERDIFEFFQP--MNPMNVHLIYEDSGRPSGECDV 183
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
EFA E++ AM+KD+ + RYIELF +S
Sbjct: 184 EFATHEEAVKAMSKDKAHMQHRYIELFLNS 213
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+H+T++ +GRP+GEA++E + +D + + + +G RYIE+F S EMD + R
Sbjct: 26 VHMTLSREGRPSGEAYIELESEQDVEVGLQRHNEHIGHRYIEVFKSKRSEMDWVVKR 82
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+ EFF ++ ++V +++++ + +GE + A+ +++
Sbjct: 141 VHMRGLPFRATERDIFEFFQPMNPMNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKA 200
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 201 HMQHRYIELF 210
>gi|194383864|dbj|BAG59290.1| unnamed protein product [Homo sapiens]
Length = 338
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
MG RY+EVF+S R E + + S DSA + G +RLRGL
Sbjct: 1 MGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGL 41
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH 101
Query: 239 RYIELFPSSHEEM 251
RYIE+F SS EE+
Sbjct: 102 RYIEVFKSSQEEV 114
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 213 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 270
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 271 DRANMQHRYIELFLNS 286
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF CT+ ++ +FF GL+IV L V K TGEAF + AL ++
Sbjct: 36 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 95
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+EVF+S ++E
Sbjct: 96 KERIGHRYIEVFKSSQEE 113
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA + A+ ++R
Sbjct: 213 CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 272
Query: 117 QNMGRRYVEVF 127
NM RY+E+F
Sbjct: 273 ANMQHRYIELF 283
>gi|20073357|gb|AAH27003.1| Hnrpf protein [Mus musculus]
Length = 338
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
MG RY+EVF+S R E + + S DSA + G +RLRGL
Sbjct: 1 MGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGL 41
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH 101
Query: 239 RYIELFPSSHEEM 251
RYIE+F SS EE+
Sbjct: 102 RYIEVFKSSQEEV 114
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 213 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 270
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 271 DRANMQHRYIELFLNS 286
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF CT+ ++ +FF GL+IV L V K TGEAF + AL ++
Sbjct: 36 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 95
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+EVF+S ++E
Sbjct: 96 KERIGHRYIEVFKSSQEE 113
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 204 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 263
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 264 AVAAMSKDRANMQHRYIELF 283
>gi|20987708|gb|AAH29764.1| Hnrpf protein [Mus musculus]
Length = 338
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
MG RY+EVF+S R E + + S DSA + G +RLRGL
Sbjct: 1 MGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGL 41
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH 101
Query: 239 RYIELFPSSHEEM 251
RYIE+F SS EE+
Sbjct: 102 RYIEVFKSSQEEV 114
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 213 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 270
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 271 DRANMQHRYIELFLNS 286
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF CT+ ++ +FF GL+IV L V K TGEAF + AL ++
Sbjct: 36 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 95
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+EVF+S ++E
Sbjct: 96 KERIGHRYIEVFKSSQEE 113
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA + A+ ++R
Sbjct: 213 CVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDR 272
Query: 117 QNMGRRYVEVF 127
NM RY+E+F
Sbjct: 273 ANMQHRYIELF 283
>gi|148670393|gb|EDL02340.1| mCG50680 [Mus musculus]
Length = 338
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
MG RY+EVF+S R E + + S DSA + G +RLRGL
Sbjct: 1 MGHRYIEVFKSHRTEMDWVLKH------------------SGPNSADSA-NDGFVRLRGL 41
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH 101
Query: 239 RYIELFPSSHEEM 251
RYIE+F SS EE+
Sbjct: 102 RYIEVFKSSQEEV 114
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGL + A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 213 CVHMRGLSYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 270
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 271 DRANMQHRYIELFLNS 286
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF CT+ ++ +FF GL+IV L V K TGEAF + AL ++
Sbjct: 36 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 95
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+EVF+S ++E
Sbjct: 96 KERIGHRYIEVFKSSQEE 113
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGL + TE D+ FF L+ V V + + + + TGEA +
Sbjct: 204 FTVQSTTGHCVHMRGLSYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 263
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 264 AVAAMSKDRANMQHRYIELF 283
>gi|335775266|gb|AEH58514.1| heterogeneous nuclear ribonucleoprotein-like protein [Equus
caballus]
Length = 337
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 19/133 (14%)
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
MG RY+EVF+S R E + + S P S D D G +RLRGL
Sbjct: 1 MGHRYIEVFKSHRTEMDWVLKH------------SGP--NSADTAND-----GFVRLRGL 41
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PF K++I+ FF + + I + ++ +G+ TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGH 101
Query: 239 RYIELFPSSHEEM 251
RYIE+F SS EE+
Sbjct: 102 RYIEVFKSSQEEV 114
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 213 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 270
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 271 DRANMQHRYIELFLNS 286
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF CT+ ++ +FF GL+IV L V K TGEAF + AL ++
Sbjct: 36 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 95
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+EVF+S ++E
Sbjct: 96 KERIGHRYIEVFKSSQEE 113
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 204 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 263
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 264 AVAAMSKDRANMQHRYIELF 283
>gi|345325737|ref|XP_003430953.1| PREDICTED: G-rich sequence factor 1-like [Ornithorhynchus anatinus]
Length = 224
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 91/196 (46%), Gaps = 21/196 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VVRLRGLP+ C+E DV +FF D +F + + E LG + + R
Sbjct: 39 VVRLRGLPYGCSEKDVVDFFAAADPYIEIFPSRRS----EVRTHLG-------SHKERRA 87
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG----IL 173
+Y S +E + A G +P+ S + T +
Sbjct: 88 AASPKYAAKLGSGLEEPEVSEAPRPVTTSEGEKEMGLPKEMSEKPLEPVEFGTAPSFHFV 147
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAMAK 231
R+RGLPF A DI++FF + ITM +S G+ TGEA V F + ED+ AAMAK
Sbjct: 148 RMRGLPFQANAQDIVNFFSPL----KPVRITMEYSSSGKATGEADVHFESHEDAVAAMAK 203
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 204 DRSHVQHRYIELFLNS 219
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 3 YRGKFAEGADGREMG-AKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRL 61
Y K G + E+ A R +G G P S P +G P F VR+
Sbjct: 93 YAAKLGSGLEEPEVSEAPRPVTTSEGEKEMGLPKEMSEKPLEPVEFGTA---PSFHFVRM 149
Query: 62 RGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMG 120
RGLPF D+ FF L V + + ++ K TGEA A+ ++R ++
Sbjct: 150 RGLPFQANAQDIVNFFSPLKPVRITMEYSSSGKATGEADVHFESHEDAVAAMAKDRSHVQ 209
Query: 121 RRYVEVF 127
RY+E+F
Sbjct: 210 HRYIELF 216
>gi|407866924|gb|EKG08457.1| heterogeneous nuclear ribonucleoprotein H/F, putative [Trypanosoma
cruzi]
Length = 450
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 28/202 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG--LDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR- 114
VVRL GLP+ +E + FF LD D + G F L V+ ++++
Sbjct: 55 VVRLHGLPYSVSEETIRAFFAEFELDEKDPILHFTEGLHRGTGFVRLKRTEDVEESIKKL 114
Query: 115 NRQNM-GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
+RQ++ RYVE+ S +E + + E ++ T +L
Sbjct: 115 HRQHIDANRYVELTASTEEERQRIL-----------------------EQQEQGCKTHVL 151
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
RLRGLPF++ ++D+ +F + V + I + +GR TG+AF++ A ED + A
Sbjct: 152 RLRGLPFTSTEEDLREFVRS-VPGVTRVDICRDMEGRNTGDAFIQLATEEDVEEAKQLHN 210
Query: 234 MTLGSRYIELFPSSHEEMDEAL 255
T+GSRYIE+ PS+ + D +
Sbjct: 211 KTMGSRYIEVLPSTMYDRDAIM 232
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R+RG+P++A ++ I +FF + +H+ N RPTGEAFVE N D AA+ +
Sbjct: 342 VVRIRGVPYAATEESIAEFFAGVKIPPQGVHMVYNEQNRPTGEAFVELENDSDLVAALER 401
Query: 232 DRMTLGSRYIELFPSS 247
+ +G+RYIE+F SS
Sbjct: 402 NGGAMGNRYIEVFQSS 417
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 31 YGTP--PSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDI----VD 84
YG P P F P A + P VVR+RG+P+ TE +AEFF G+ I V
Sbjct: 313 YGVPGGPQPLFPMFPGHAPMVAPRAPSPHVVRIRGVPYAATEESIAEFFAGVKIPPQGVH 372
Query: 85 VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129
+++ ++ N+ TGEAF L + AL+RN MG RY+EVF+S
Sbjct: 373 MVY-NEQNRPTGEAFVELENDSDLVAALERNGGAMGNRYIEVFQS 416
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 140 NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED 199
+ ++D G P ++ +E + T ++RL GLP+S ++ I FF +F L E
Sbjct: 30 DTIADAYQGEP-------QTGEEDIPVMIETRVVRLHGLPYSVSEETIRAFFAEFELDEK 82
Query: 200 S--IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL-GSRYIELFPSSHEEMDEAL 255
+H T +G G FV ED + ++ K R + +RY+EL S+ EE L
Sbjct: 83 DPILHFT---EGLHRGTGFVRLKRTEDVEESIKKLHRQHIDANRYVELTASTEEERQRIL 139
Query: 256 SR 257
+
Sbjct: 140 EQ 141
>gi|344240722|gb|EGV96825.1| Heterogeneous nuclear ribonucleoprotein F [Cricetulus griseus]
Length = 241
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 34/205 (16%)
Query: 40 MYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVHKN-NKF 94
M P GYV V+L GL + + DV F I D V F++ + +
Sbjct: 1 MLGPEGGEGYV--------VKLCGLLWSGSIEDVQNFLSNCTIHDGVSGVHFIYTSEGRQ 52
Query: 95 TGEAFCVLGYPLQVDFALQR--NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR 152
+GEAF L V AL++ +R++MG RY+EVF+S R + + H
Sbjct: 53 SGEAFVELQSENDVKLALKKKKDRESMGHRYIEVFKSHRTKMDWVL-----------KHS 101
Query: 153 SIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 212
RA S ++G +RL GLPF K++I+ FF + + I + ++ +G+ T
Sbjct: 102 GSNRANSANDG--------FVRLPGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 153
Query: 213 GEAFVEFANAEDSKAAMAKDRMTLG 237
GEAF++ A+ E ++ A+ K + +G
Sbjct: 154 GEAFIQIASQELAEKALGKHKERIG 178
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++L GL +S +D+ +F + + + +H S+GR +GEAFVE + D K A+
Sbjct: 11 VVKLCGLLWSGSIEDVQNFLSNCTIHDGVSGVHFIYTSEGRQSGEAFVELQSENDVKLAL 70
Query: 230 AK--DRMTLGSRYIELFPSSHEEMDEAL 255
K DR ++G RYIE+F S +MD L
Sbjct: 71 KKKKDRESMGHRYIEVFKSHRTKMDWVL 98
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRL GLPF CT+ ++ +FF GL+IV L V K TGEAF + + AL ++
Sbjct: 114 VRLPGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFIQIASQELAEKALGKH 173
Query: 116 RQNMGR 121
++ +G+
Sbjct: 174 KERIGQ 179
>gi|402585392|gb|EJW79332.1| hypothetical protein WUBG_09760 [Wuchereria bancrofti]
Length = 236
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 22/192 (11%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEF----FHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQV 108
P +RLRGLPF E DV +F F GL+ + F + N + +GE + L V
Sbjct: 3 PDTNYIRLRGLPFAAKEQDVRDFLQVFFFGLNAKSITFTLTSNGRASGECYVELDDQEAV 62
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
A + +R + RY+EVF E I + V GG DS
Sbjct: 63 KEAQKLDRNEINGRYIEVFSVSDAELLMMIRHGVIKGSGGDA--------------DSRY 108
Query: 169 HTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ ++RLRGLP+SA DDI +FF ++ D++ I GRP+GEAFV A E ++
Sbjct: 109 ASNFVVRLRGLPYSATIDDIKEFFSGLEVA-DAV-IDKEPGGRPSGEAFVRLATKEYAEL 166
Query: 228 AMAKDRMTLGSR 239
A+ + + +GSR
Sbjct: 167 ALERSKNYMGSR 178
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
T +RLRGLPF+A + D+ DF + F L+ SI T+ S+GR +GE +VE + E K
Sbjct: 5 TNYIRLRGLPFAAKEQDVRDFLQVFFFGLNAKSITFTLTSNGRASGECYVELDDQEAVKE 64
Query: 228 AMAKDRMTLGSRYIELFPSSHEEM 251
A DR + RYIE+F S E+
Sbjct: 65 AQKLDRNEINGRYIEVFSVSDAEL 88
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNR 116
VVRLRGLP+ T D+ EFF GL++ D + + + +GEAF L + AL+R++
Sbjct: 113 VVRLRGLPYSATIDDIKEFFSGLEVADAVIDKEPGGRPSGEAFVRLATKEYAELALERSK 172
Query: 117 QNMG-RRYVEVF 127
MG R+ EVF
Sbjct: 173 NYMGSRKESEVF 184
>gi|395737930|ref|XP_003777005.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H2-like [Pongo abelii]
Length = 596
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 26/196 (13%)
Query: 59 VRLRGLPFDCTEVDVAEFF-----HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
++++GLP+ C+ +V F +G + ++ + + +GEAF L Q+
Sbjct: 1 MKVQGLPWSCSADEVMHFSDCKIQNGTSGICFIYT-REGRPSGEAFVEL-ESXQMKRTGF 58
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
++R+ MG R+VEVF+S E + VS G S D D G +
Sbjct: 59 KDRETMGHRHVEVFKSNSVEM-----DWVSKHTG---------LNSPDTAND-----GFV 99
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
LRGLPF K++I+ FF + + I + ++ GR TGEAFV A+ E ++ A+ K R
Sbjct: 100 WLRGLPFGCXKEEIVHFFSGLEIVPNGITLXVDFQGRSTGEAFVPLASQEIAETALKKHR 159
Query: 234 MTLGSRYIELFPSSHE 249
+G RYIE+ S E
Sbjct: 160 ERIGHRYIEIXNSQAE 175
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 94/254 (37%), Gaps = 76/254 (29%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGY----------- 104
V LRGLPF C + ++ FF GL+IV L V + TGEAF L
Sbjct: 99 VWLRGLPFGCXKEEIVHFFSGLEIVPNGITLXVDFQGRSTGEAFVPLASQEIAETALKKH 158
Query: 105 -----------------------PLQVDFALQ----RNRQNMGRRYVEV-----FRSKRQ 132
P Q A+Q +R GR Y + F RQ
Sbjct: 159 RERIGHRYIEIXNSQAEVHTYCDPCQKLMAVQWPGPSDRPGAGRGYNSIGRGAGFERMRQ 218
Query: 133 EYYKAIANEVSDVRGG----------------------SPHRSIPRAKSHDEGKDSAVHT 170
Y + D G S HR S VHT
Sbjct: 219 GPYGGGYRDYDDYCGCNDGYGFRSDRFGKDCNYCFSGMSDHRXGDSGSSFQSTTGHCVHT 278
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
RGLP+ A K+ +F+ L+ +HI + D R TG A VEFA +D+ AMA
Sbjct: 279 -----RGLPYRATKN-XYNFYSP--LNHVRVHIEIGPDDRVTGRADVEFAAHKDAVVAMA 330
Query: 231 KDRMTLGSRYIELF 244
KD+ + RY+E+F
Sbjct: 331 KDKANMQHRYMEIF 344
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDS-IHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++++GLP+S D++M F + + S I +GRP+GEAFVE + + + K
Sbjct: 1 MKVQGLPWSCSADEVMHFSDCKIQNGTSGICFIYTREGRPSGEAFVELESXQMKRTGF-K 59
Query: 232 DRMTLGSRYIELFPSSHEEMD 252
DR T+G R++E+F S+ EMD
Sbjct: 60 DRETMGHRHVEVFKSNSVEMD 80
>gi|209880052|ref|XP_002141466.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209557072|gb|EEA07117.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 626
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 127/265 (47%), Gaps = 39/265 (14%)
Query: 13 GREMGAKRQRLIDQGPSFYG----TPPSSSFMYNPPPAYGYVSQP--------PPFPVVR 60
G MG +R I+ PS YG S+ ++S P PV+R
Sbjct: 369 GNRMG---KRWIEVLPSSYGDFLECKKSNEIFQKLSDKIRFLSNPLLDQDSEYVNRPVLR 425
Query: 61 LRGLPFDCTEVDVAEFFHGLDI----VDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQR 114
LRGLP+ TE ++ +FF + VD +F+ N++ +GEA VL ++ +QR
Sbjct: 426 LRGLPWSTTEFEIVQFFETAGVRNISVDNVFLGYTTNSRPSGEACVVLPEWCNLN-EVQR 484
Query: 115 --NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
NR+ +G+RY+EVF S QE + + +S +G S H I R +
Sbjct: 485 VLNRRVIGKRYIEVFISSYQEVHSFKKSAMSLNKGKSRH--IQR------------NFDT 530
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAK 231
LR++GL F + D + FF ++ + S + G+ +++FA ED+ KA +K
Sbjct: 531 LRVKGLHFCNTEADFVSFFGGCQVTAIVPITSGISSTKQFGQFYIKFATHEDAYKALKSK 590
Query: 232 DRMTLGSRYIELFPSSHEEMDEALS 256
+ + + +Y+ELFP+ EE A++
Sbjct: 591 NFVLIEDQYVELFPAKEEEFRNAVN 615
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 110/208 (52%), Gaps = 19/208 (9%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIV---DVLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
PV+RLRGLP+ D+A F + V +++ + +N+ +GEA+ VL + +
Sbjct: 305 PVIRLRGLPWKTNIGDIALFLSPVCNVPFKNIIMSYGSDNRMSGEAYVVLSSKDDMKVCI 364
Query: 113 QRNRQN-MGRRYVEVFRSKRQEYYKAI-ANEV-SDVRGGSPHRSIPRAKSHDEGKDSAVH 169
+ N MG+R++EV S ++ + +NE+ + S P E V+
Sbjct: 365 SQLHGNRMGKRWIEVLPSSYGDFLECKKSNEIFQKLSDKIRFLSNPLLDQDSE----YVN 420
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDF---VLSEDSIHITMNSDGRPTGEAFV---EFANAE 223
+LRLRGLP+S + +I+ FF+ +S D++ + ++ RP+GEA V E+ N
Sbjct: 421 RPVLRLRGLPWSTTEFEIVQFFETAGVRNISVDNVFLGYTTNSRPSGEACVVLPEWCNLN 480
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ + + +R +G RYIE+F SS++E+
Sbjct: 481 EVQRVL--NRRVIGKRYIEVFISSYQEV 506
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 20/107 (18%)
Query: 159 SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDF--------FKDFVLSEDSIHITMNSDGR 210
+H + + ++RLRGLP+ DI F FK+ ++S SD R
Sbjct: 293 NHVSAISNIITRPVIRLRGLPWKTNIGDIALFLSPVCNVPFKNIIMS-------YGSDNR 345
Query: 211 PTGEAFVEFANAEDSKAAMAK---DRMTLGSRYIELFPSSHEEMDEA 254
+GEA+V ++ +D K +++ +RM G R+IE+ PSS+ + E
Sbjct: 346 MSGEAYVVLSSKDDMKVCISQLHGNRM--GKRWIEVLPSSYGDFLEC 390
>gi|291232395|ref|XP_002736145.1| PREDICTED: RNA binding motif protein 12-like [Saccoglossus
kowalevskii]
Length = 983
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 12/206 (5%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFVHKNN--KFTGEAFCVLGYPLQVDFALQR 114
VRL+GLPF ++ ++ +FF GL+I D + + ++ K TG+ F + AL+R
Sbjct: 470 CVRLQGLPFSSSDENIKKFFAGLEIDRDGIRISTDSFGKRTGDGFVKFRNQMDHQEALKR 529
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIAN-EVSDVRGG----SPHRSIPR----AKSHDEGKD 165
+ + MG RY++V + + A+ E R H+ P + +
Sbjct: 530 SMKYMGTRYIKVIPCPEKVWASCGADFERRHSRDAFHSDRQHQDAPNFSSRSSHRSRSRS 589
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+ + LRGLPF I DFFK + E++I + +N G G +VEF D
Sbjct: 590 PIRDSLCVSLRGLPFVTNTSHIFDFFKGLDVPEENIFLEVNEKGNCKGAGYVEFKTVHDF 649
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEM 251
+ A+A++R +G+R++ + + E+M
Sbjct: 650 RKALARNRQYIGTRFVTVMAIAKEDM 675
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 28/226 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDF--ALQR 114
V LRGLPF + +FF GLD+ + +F+ N K + + + DF AL R
Sbjct: 596 CVSLRGLPFVTNTSHIFDFFKGLDVPEENIFLEVNEKGNCKGAGYVEFKTVHDFRKALAR 655
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK---------- 164
NRQ +G R+V V +++ I + + +R S + P + D+ K
Sbjct: 656 NRQYIGTRFVTVMAIAKEDMKAQIRSHPNWMRTVSQMSTAPATPTSDDKKLPLEDKIEPP 715
Query: 165 -DSAVHTG--------------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209
D G +R++ +P+++ + +I+ F + I T N G
Sbjct: 716 KDDVKEKGSSENAPKSITDEGTCIRMKNIPYASNRGEILHFLSGIAIVHQGIERTYNEKG 775
Query: 210 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
T EA++EF + ED+K A A++ + R I + S EM + L
Sbjct: 776 LHTDEAYIEFYSVEDAKRAEARNEGKIRDRTIYITRVSKSEMLQRL 821
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T I+RL+GLP++A D+ FFK + + +HI G +G+AF+ F E+++ AM
Sbjct: 2 TIIIRLQGLPWAASALDVRHFFKGLTIPDGGVHIV----GGESGDAFIAFGGDEEARKAM 57
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
L I L SS EM ++ R
Sbjct: 58 LITNQPLCGSKITLMLSSKSEMQNVIAASR 87
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT-L 236
+P+SA DI++FF + + DS+ I N GRPTG+A V F ++ A+ T +
Sbjct: 914 IPYSATIPDILNFFNGYGVLPDSVRIHFNDAGRPTGDALVAFDGPHEANRALRDLNNTFM 973
Query: 237 GSRYIELF 244
G R ++L+
Sbjct: 974 GPRKVQLY 981
>gi|334313810|ref|XP_001369254.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Monodelphis domestica]
Length = 377
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G + A G +RLRGLPF K++I+ FF + + I +TM+ GR TGEAFV+FA+
Sbjct: 39 GPNDAASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASK 98
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
E ++ A+ K + +G RYIE+F SS E+
Sbjct: 99 EIAENALGKHKERIGHRYIEIFKSSRSEI 127
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 220 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 277
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 278 AVAAMSKDKNNMQHRYIELFLNS 300
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 48 TVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 107
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S R E
Sbjct: 108 HKERIGHRYIEIFKSSRSE 126
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 228 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 287
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 288 NMQHRYIELF 297
>gi|395501374|ref|XP_003755070.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 [Sarcophilus
harrisii]
Length = 342
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 57/89 (64%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G + A G +RLRGLPF K++I+ FF + + I +TM+ GR TGEAFV+FA+
Sbjct: 9 GPNDAASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASK 68
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
E ++ A+ K + +G RYIE+F SS E+
Sbjct: 69 EIAENALGKHKERIGHRYIEIFKSSRSEI 97
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 190 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 247
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 248 ALAAMSKDKNNMQHRYIELFLNS 270
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 18 TVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 77
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S R E
Sbjct: 78 HKERIGHRYIEIFKSSRSE 96
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 198 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDALAAMSKDKN 257
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 258 NMQHRYIELF 267
>gi|18027358|gb|AAL55761.1|AF289577_1 unknown [Homo sapiens]
gi|119603621|gb|EAW83215.1| RNA binding motif protein 35B, isoform CRA_b [Homo sapiens]
Length = 303
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
Query: 119 MGRRYVEVFRSKRQEYYKAI---ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
+G+RY+E+FRS E + + A+ +P IP + G+D +RL
Sbjct: 2 LGKRYIELFRSTAAEVQQVLNRYASGPLLPTLTAPLLPIPFPLAPGTGRDC------VRL 55
Query: 176 RGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-D 232
RGLP++A +DI+ F + + +H+ +N GRP+G+AF++ +AE + AA +
Sbjct: 56 RGLPYTATIEDILSFLGEAAADIRPHGVHMVLNQQGRPSGDAFIQMTSAERALAAAQRCH 115
Query: 233 RMTLGSRYIELFPSSHEEMDEALSRG 258
+ + RY+E+ P S EEM L G
Sbjct: 116 KKVMKERYVEVVPCSTEEMSRVLMGG 141
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 22/114 (19%)
Query: 55 PFPV--------VRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGE 97
PFP+ VRLRGLP+ T D+ F HG+ +V +++ + +G+
Sbjct: 41 PFPLAPGTGRDCVRLRGLPYTATIEDILSFLGEAAADIRPHGVHMV----LNQQGRPSGD 96
Query: 98 AFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
AF + + A QR +++ M RYVEV +E + + G SP
Sbjct: 97 AFIQMTSAERALAAAQRCHKKVMKERYVEVVPCSTEEMSRVLMGGTLGRSGMSP 150
>gi|193786713|dbj|BAG52036.1| unnamed protein product [Homo sapiens]
Length = 568
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 11/148 (7%)
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAKSHDEGKDS---AVH 169
M +RYVEV + +++ A + G P +++PR+KS K S + H
Sbjct: 3 MIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPH 62
Query: 170 TG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N D KA
Sbjct: 63 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEVDYKA 122
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEAL 255
A+ + + +G+R+I++ P + + M E +
Sbjct: 123 ALCRHKQYMGNRFIQVHPITKKGMLEKI 150
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 101/201 (50%), Gaps = 10/201 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F + AL R
Sbjct: 67 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEVDYKAALCR 126
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGI 172
++Q MG R+++V + K + ++ +R + S + + + EG ++
Sbjct: 127 HKQYMGNRFIQVHPITK----KGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKV-C 181
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ +
Sbjct: 182 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLH 241
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R L R + + E+M E
Sbjct: 242 RKKLNGREAFVHVVTLEDMRE 262
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 493 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 552
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 553 LNDR-PIGSRKVKL 565
>gi|390475715|ref|XP_003735008.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Callithrix jacchus]
Length = 421
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%)
Query: 138 IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 197
+ ++VS+V+G I + G +RLRGLPF K++I+ FF+ +
Sbjct: 73 LEDQVSEVKGAFKSNGIEMDWVMKHNGPNDARDGTVRLRGLPFGCSKEEIVQFFQGLEIV 132
Query: 198 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 252
+ I + M+ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E++
Sbjct: 133 PNGITLMMDYQGRSTGEAFVQFASKEITENALGKHKERIGHRYIEIFRSSRNEIE 187
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 264 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 321
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + +YIELF +S
Sbjct: 322 AVAAMSKDKNNMQHQYIELFLNS 344
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 107 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLMMDYQGRSTGEAFVQFASKEITENALGK 166
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 167 HKERIGHRYIEIFRSSRNE 185
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 272 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 331
Query: 118 NMGRRYVEVF 127
NM +Y+E+F
Sbjct: 332 NMQHQYIELF 341
>gi|119574668|gb|EAW54283.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_d
[Homo sapiens]
Length = 149
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
>gi|194043009|ref|XP_001928191.1| PREDICTED: probable RNA-binding protein 19 [Sus scrofa]
Length = 967
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 25/247 (10%)
Query: 8 AEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP-VVRLRGLPF 66
A A+ + R+ + P+F P+++ + PA+ + P P V+LRG PF
Sbjct: 258 AAPAEVKHWSLGREEVHPASPTF----PAATLLGTEKPAH---QREPTTPHTVKLRGAPF 310
Query: 67 DCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRY 123
+ TE +V EF L V + V H N TG F +V ALQ NR+ MG RY
Sbjct: 311 NVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYVFVDFSSEEEVKKALQCNREYMGGRY 368
Query: 124 VEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 183
+EVFR K KA + G R++ H+E +D A +G L +R LP+++
Sbjct: 369 IEVFREKSIPTAKAPPKNSTKAWQG---RTL---GEHEEEEDLA-DSGRLFVRNLPYTSS 421
Query: 184 KDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRY 240
++D+ F + LSE +H ++S +P G AFV F E + A A+ D R
Sbjct: 422 EEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 479
Query: 241 IELFPSS 247
+ + PS+
Sbjct: 480 LHVLPST 486
>gi|148700120|gb|EDL32067.1| mCG11326, isoform CRA_d [Mus musculus]
Length = 186
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
>gi|149043915|gb|EDL97366.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_d [Rattus norvegicus]
Length = 186
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
>gi|324527735|gb|ADY48838.1| Heterogeneous nuclear ribonucleoprotein F, partial [Ascaris suum]
Length = 166
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
VVRLRG+PF T D+ EFF GLD+ DV+ + + +GEAF L + AL+R++
Sbjct: 42 VVRLRGIPFSATVADIKEFFSGLDVADVVIDKEQGGRPSGEAFVRLASKEHAELALERSK 101
Query: 117 QNMGRRYVEVFRSKRQE 133
NMG RYVEVFRS +E
Sbjct: 102 NNMGSRYVEVFRSSGEE 118
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 16/142 (11%)
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
M RY+EVF E I H I A S+ ++ + ++RLRG+
Sbjct: 1 MSSRYIEVFSVSESEVSWMIR-----------HGVIKSADSNGTSTGTS-NNYVVRLRGI 48
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PFSA DI +FF +++ + I GRP+GEAFV A+ E ++ A+ + + +GS
Sbjct: 49 PFSATVADIKEFFSGLDVAD--VVIDKEQGGRPSGEAFVRLASKEHAELALERSKNNMGS 106
Query: 239 RYIELFPSSHEEMDEAL--SRG 258
RY+E+F SS EEMD + SRG
Sbjct: 107 RYVEVFRSSGEEMDNSFYTSRG 128
>gi|224046497|ref|XP_002200032.1| PREDICTED: RNA-binding protein 12B isoform 1 [Taeniopygia guttata]
gi|449494411|ref|XP_004175301.1| PREDICTED: RNA-binding protein 12B isoform 2 [Taeniopygia guttata]
Length = 699
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 23/212 (10%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNM 119
LRG+P+ TEV+V F G+ + V+ + H+N G+ P L+R+RQ M
Sbjct: 178 LRGIPYSATEVEVRAFLSGIRVDGVILIKHRNGLNNGDCLIKCATPSDALEGLKRHRQYM 237
Query: 120 GRRYVEVFRSKRQEYYKA-------------IANEVSDVRGGSPH-------RSIPRAKS 159
G+R++E+ + + + + + + S G H RS R ++
Sbjct: 238 GQRFIEISPTTEERWIECGGQIDMPDEMDHFLCEDHSPRSSGYVHSRKHSHSRSPRRQRT 297
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H + S + LR L F+ K D+ DFF + + I I + + T +AFV
Sbjct: 298 HS--RSSPGQEYYIHLRNLCFNVEKRDLRDFFPELDIHSKQIKILTDKHQKRTRDAFVML 355
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
N + +AA+ R L +R + +FP S + M
Sbjct: 356 RNEREYQAALECHRKVLINRPVYIFPISRKSM 387
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 20/206 (9%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
+ LR L F+ + D+ +FF LDI + K+ K T +AF +L + AL+ +
Sbjct: 309 IHLRNLCFNVEKRDLRDFFPELDIHSKQIKILTDKHQKRTRDAFVMLRNEREYQAALECH 368
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPR--------AKSHDEGKDSA 167
R+ + R V +F R+ K I + RS+ R KS+ EG S
Sbjct: 369 RKVLINRPVYIFPISRKSMLKIIDS-------CERKRSLDRDHLGQAISEKSYREGHSSP 421
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ +R PF K ++ FF F + ED I++ + G GEA V+F + E +
Sbjct: 422 --RNCVYVRNFPFDVSKIEVRKFFARFDIDEDDIYLLYDEKGVGLGEALVKFKSEEQAMK 479
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDE 253
A +R T + + S ++M +
Sbjct: 480 AENLNRQTFLGTEVLIRLISQDQMQK 505
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPPDIRRFFLGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ IELF SS EM + R
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSR 87
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK- 231
+ L+ LPF A ++I+DFF + + +S+ + N G P+G+A V N E++ AA+ +
Sbjct: 625 ILLKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMAAINEL 684
Query: 232 DRMTLGSRYIEL 243
+ +G R ++L
Sbjct: 685 NDRPIGPRKVKL 696
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 101/257 (39%), Gaps = 65/257 (25%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAF--------------CVLG 103
V+RL+GLP D+ FF GL+I D VH GEAF C G
Sbjct: 4 VIRLQGLPVVAGPPDIRRFFLGLNIPDG-GVHIIGGEIGEAFIIFATDEDARRAMSCSGG 62
Query: 104 Y--------------PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---- 145
+ +Q + R R + G R + S+R + + V D+
Sbjct: 63 FIKDSRIELFLSSKAEMQNTIEMSRKRFDRGGRET-LSGSRRTGTDGSSTSRVGDIPHFV 121
Query: 146 ----RG------GSPHR---------------SIPRAKSHDEGKDSAVHTG---ILRLRG 177
+G G P+R IP++ ++ KDS T L LRG
Sbjct: 122 TASPKGIRKPSYGPPNRVEAGFHTNGTRYGDMGIPKS-NYQLRKDSHPFTPDDRYLFLRG 180
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
+P+SA + ++ F + D + + + +G G+ ++ A D+ + + R +G
Sbjct: 181 IPYSATEVEVRAFLSGIRV--DGVILIKHRNGLNNGDCLIKCATPSDALEGLKRHRQYMG 238
Query: 238 SRYIELFPSSHEEMDEA 254
R+IE+ P++ E E
Sbjct: 239 QRFIEISPTTEERWIEC 255
>gi|149602744|ref|XP_001512376.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Ornithorhynchus anatinus]
Length = 332
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 56/89 (62%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G + G +RLRGLPF K++I+ FF + + I +TM+ GR TGEAFV+FA+
Sbjct: 9 GPNDTASDGTVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASK 68
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
E ++ A+ K + +G RYIE+F SS E+
Sbjct: 69 EIAENALGKHKERIGHRYIEIFKSSRSEI 97
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 175 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 232
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 233 AVAAMSKDKNNMQHRYIELFLNS 255
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 18 TVRLRGLPFGCSKEEIVQFFTGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 77
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S R E
Sbjct: 78 HKERIGHRYIEIFKSSRSE 96
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 183 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 242
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 243 NMQHRYIELF 252
>gi|327277960|ref|XP_003223731.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Anolis carolinensis]
Length = 326
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 157 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
A H+ DS+ G +RLRGLPF K++I+ FF+ + + I +T++ GR TGEAF
Sbjct: 4 AGKHNGPNDSSS-DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAF 62
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
V+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 63 VQFASKEIAEKALGKHKERIGHRYIEIFKSSKSEI 97
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD
Sbjct: 183 VHMRGLPFRATENDIANFFSP--LTPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 240
Query: 233 RMTLGSRYIELFPSS 247
+ + RYIELF +S
Sbjct: 241 KNHMQHRYIELFLNS 255
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 18 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAEKALGK 77
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S + E
Sbjct: 78 HKERIGHRYIEIFKSSKSE 96
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L + V + + + + TGEA A+ +++
Sbjct: 183 VHMRGLPFRATENDIANFFSPLTPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 242
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 243 HMQHRYIELF 252
>gi|327277958|ref|XP_003223730.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Anolis carolinensis]
Length = 341
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 157 AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
A H+ DS+ G +RLRGLPF K++I+ FF+ + + I +T++ GR TGEAF
Sbjct: 4 AGKHNGPNDSSS-DGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAF 62
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
V+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 63 VQFASKEIAEKALGKHKERIGHRYIEIFKSSKSEI 97
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD
Sbjct: 198 VHMRGLPFRATENDIANFFSP--LTPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 255
Query: 233 RMTLGSRYIELFPSS 247
+ + RYIELF +S
Sbjct: 256 KNHMQHRYIELFLNS 270
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 18 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAEKALGK 77
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S + E
Sbjct: 78 HKERIGHRYIEIFKSSKSE 96
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L + V + + + + TGEA A+ +++
Sbjct: 198 VHMRGLPFRATENDIANFFSPLTPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 257
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 258 HMQHRYIELF 267
>gi|224052108|ref|XP_002190951.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Taeniopygia guttata]
Length = 327
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD
Sbjct: 185 VHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 242
Query: 233 RMTLGSRYIELFPSS 247
+ + RYIELF +S
Sbjct: 243 KNHMQHRYIELFLNS 257
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S + E
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 185 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 244
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 245 HMQHRYIELF 254
>gi|344275083|ref|XP_003409343.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Loxodonta africana]
Length = 335
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 175 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 232
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 233 AVAAMSKDKNNMQHRYIELFLNS 255
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 183 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 242
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 243 NMQHRYIELF 252
>gi|224052106|ref|XP_002190890.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Taeniopygia guttata]
Length = 342
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD
Sbjct: 200 VHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 257
Query: 233 RMTLGSRYIELFPSS 247
+ + RYIELF +S
Sbjct: 258 KNHMQHRYIELFLNS 272
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S + E
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 259
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 260 HMQHRYIELF 269
>gi|344275081|ref|XP_003409342.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Loxodonta africana]
Length = 350
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 190 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 247
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 248 AVAAMSKDKNNMQHRYIELFLNS 270
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 198 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 257
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 258 NMQHRYIELF 267
>gi|431904171|gb|ELK09593.1| Heterogeneous nuclear ribonucleoprotein H3 [Pteropus alecto]
Length = 405
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 75 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 134
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 135 KHKERIGHRYIEIFRSSRSEI 155
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 248 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 305
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 306 AVAAMSKDKNNMQHRYIELFLNS 328
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 76 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 135
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 136 HKERIGHRYIEIFRSSRSE 154
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 256 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 315
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 316 NMQHRYIELF 325
>gi|148700119|gb|EDL32066.1| mCG11326, isoform CRA_c [Mus musculus]
gi|149043913|gb|EDL97364.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 314
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTL 236
+ AAM+KD+ +
Sbjct: 247 AVAAMSKDKNNM 258
>gi|449269002|gb|EMC79814.1| Heterogeneous nuclear ribonucleoprotein H3 [Columba livia]
Length = 343
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPNDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD
Sbjct: 201 VHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 258
Query: 233 RMTLGSRYIELFPSS 247
+ + RYIELF +S
Sbjct: 259 KNHMQHRYIELFLNS 273
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S + E
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 201 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 260
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 261 HMQHRYIELF 270
>gi|301755896|ref|XP_002913784.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Ailuropoda melanoleuca]
gi|281346969|gb|EFB22553.1| hypothetical protein PANDA_001623 [Ailuropoda melanoleuca]
Length = 346
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>gi|301609834|ref|XP_002934460.1| PREDICTED: RNA-binding protein 12B-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 659
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 27/226 (11%)
Query: 46 AYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGY 104
YGYV L GLP+ E+DV EFFHG ++VD+ F V +N G A+ G
Sbjct: 155 GYGYVF---------LYGLPYTAGELDVKEFFHGFNVVDLHFSVRQNGVRDGNAYVKFGS 205
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS---IPR--AKS 159
AL R+ + +G RY+ V Q++ +A +D R S ++ PR +K+
Sbjct: 206 VQDAQAALSRDNEYIGHRYICVKLCNEQKWIEAGG--PTDERNESVRKNRQWSPRFPSKN 263
Query: 160 HDEGKDSAVHTG----------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209
H + +H L L + +S K DI FF D + + I + ++ +G
Sbjct: 264 HSRSRSPKIHRTRSRSPHNQQFYLHLLNMSYSVQKTDIKLFFGDPDIPDTQIKLLLDRNG 323
Query: 210 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
T E FV N + + + + L R + ++P + ++M E +
Sbjct: 324 VQTREGFVLIKNEKFYQKCLGLHKGLLNGREVWVYPIARKDMLELI 369
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 50/241 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP D+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLQGLPVVAGSTDIRHFFSGLHIPDG-GVHITGGKIGEAFIIFATDEDARRAMSRSGG 62
Query: 118 NMGRRYVEVFRSKRQE--------------------------------YYKAIANEVSDV 145
+ + +E+F S + E Y K +AN+ S+V
Sbjct: 63 FIKKSRIELFLSSKAEMQHTLEMNRKGNKDLGPTPDISKLLNVMKKGIYQKNMANK-SNV 121
Query: 146 RGG-------SPHRSIPRAKSHDEG-----KDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193
G ++PR K + KD+ G + L GLP++AG+ D+ +FF
Sbjct: 122 EAGFDSSGAKYTEENMPRPKYQGKKDIWPLKDNGY--GYVFLYGLPYTAGELDVKEFFHG 179
Query: 194 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
F + + +H ++ +G G A+V+F + +D++AA+++D +G RYI + + ++ E
Sbjct: 180 FNVVD--LHFSVRQNGVRDGNAYVKFGSVQDAQAALSRDNEYIGHRYICVKLCNEQKWIE 237
Query: 254 A 254
A
Sbjct: 238 A 238
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HIT G GEAF+ FA ED++ AM++
Sbjct: 4 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHIT----GGKIGEAFIIFATDEDARRAMSR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ IELF SS EM L R
Sbjct: 60 SGGFIKKSRIELFLSSKAEMQHTLEMNR 87
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 8/199 (4%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
+ L + + + D+ FF DI D L + +N T E F ++ L +
Sbjct: 287 LHLLNMSYSVQKTDIKLFFGDPDIPDTQIKLLLDRNGVQTREGFVLIKNEKFYQKCLGLH 346
Query: 116 RQNMGRRYVEVFRSKRQEYYKAI-ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+ + R V V+ R++ + I ++E + + P+ K +D + +
Sbjct: 347 KGLLNGREVWVYPIARKDMLELIESSERQQLERNTSEDPSPKKKF----RDRSNLKRYMY 402
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
LR PF+ K ++ FF F + E I + +S G GEA V F + + A ++
Sbjct: 403 LRNFPFNVSKSEVQKFFAGFPVDEQDIFLLYDSRGVGLGEALVTFPSEHQAILAEGLNQQ 462
Query: 235 TLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 463 KFLGTEVLLRRISEEQMKE 481
>gi|255077464|ref|XP_002502372.1| predicted protein [Micromonas sp. RCC299]
gi|226517637|gb|ACO63630.1| predicted protein [Micromonas sp. RCC299]
Length = 202
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA--NAEDSKA 227
GILRLR +P+ A K D+++FF ++ED + I ++++ TGEAFVEF+ +A S+A
Sbjct: 109 CGILRLRSVPYEATKTDVVNFFYGMGVTEDKVKIVLDANSASTGEAFVEFSGDDANISQA 168
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
M KDR LGSR +E+F SS EE+ GR
Sbjct: 169 LM-KDRAVLGSRCVEMFRSSLEEVQRMAMMGR 199
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVL-GYPLQVDFALQ 113
++RLR +P++ T+ DV FF+G+ + + + + N+ TGEAF G + AL
Sbjct: 111 ILRLRSVPYEATKTDVVNFFYGMGVTEDKVKIVLDANSASTGEAFVEFSGDDANISQALM 170
Query: 114 RNRQNMGRRYVEVFRSKRQEYYK 136
++R +G R VE+FRS +E +
Sbjct: 171 KDRAVLGSRCVEMFRSSLEEVQR 193
>gi|62898443|dbj|BAD97161.1| heterogeneous nuclear ribonucleoprotein H3 isoform a variant [Homo
sapiens]
Length = 346
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYI+LF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIKLFLNS 269
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 118 NMGRRYVEVF 127
NM RY+++F
Sbjct: 257 NMQHRYIKLF 266
>gi|60302824|ref|NP_001012610.1| heterogeneous nuclear ribonucleoprotein H3 [Gallus gallus]
gi|60099043|emb|CAH65352.1| hypothetical protein RCJMB04_21b18 [Gallus gallus]
Length = 342
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD
Sbjct: 200 VHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKD 257
Query: 233 RMTLGSRYIELFPSS 247
+ + RYIELF +S
Sbjct: 258 KNHMQHRYIELFLNS 272
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S + E
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 200 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 259
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 260 HMQHRYIELF 269
>gi|330864791|ref|NP_001193508.1| heterogeneous nuclear ribonucleoprotein H3 [Bos taurus]
Length = 317
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM++D+ + RYIELF +S
Sbjct: 247 AVAAMSRDKNNMQHRYIELFLNS 269
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ R++
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSRDKN 256
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>gi|14141157|ref|NP_036339.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Homo sapiens]
gi|343780936|ref|NP_001230484.1| heterogeneous nuclear ribonucleoprotein H3 [Sus scrofa]
gi|388452508|ref|NP_001253678.1| heterogeneous nuclear ribonucleoprotein H3 [Macaca mulatta]
gi|73952781|ref|XP_536369.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Canis lupus familiaris]
gi|149689928|ref|XP_001503654.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Equus caballus]
gi|291404271|ref|XP_002718501.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Oryctolagus cuniculus]
gi|296220546|ref|XP_002756352.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Callithrix jacchus]
gi|332218213|ref|XP_003258253.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Nomascus leucogenys]
gi|332834180|ref|XP_521495.3| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Pan troglodytes]
gi|397520483|ref|XP_003830346.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Pan paniscus]
gi|402880658|ref|XP_003903915.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Papio anubis]
gi|403273867|ref|XP_003928719.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Saimiri boliviensis boliviensis]
gi|410975227|ref|XP_003994035.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Felis catus]
gi|410975229|ref|XP_003994036.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Felis catus]
gi|426364932|ref|XP_004049545.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Gorilla gorilla gorilla]
gi|23503095|sp|P31942.2|HNRH3_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein H3;
Short=hnRNP H3; AltName: Full=Heterogeneous nuclear
ribonucleoprotein 2H9; Short=hnRNP 2H9
gi|5542020|gb|AAD45179.1|L32610_1 ribonucleoprotein [Homo sapiens]
gi|7739436|gb|AAF68843.1| hnRNP 2H9 [Homo sapiens]
gi|119574665|gb|EAW54280.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_a
[Homo sapiens]
gi|119574670|gb|EAW54285.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_a
[Homo sapiens]
gi|351702487|gb|EHB05406.1| Heterogeneous nuclear ribonucleoprotein H3 [Heterocephalus glaber]
gi|355562560|gb|EHH19154.1| hypothetical protein EGK_19802 [Macaca mulatta]
gi|355782891|gb|EHH64812.1| hypothetical protein EGM_18125 [Macaca fascicularis]
gi|380784275|gb|AFE64013.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Macaca
mulatta]
gi|380812322|gb|AFE78035.1| heterogeneous nuclear ribonucleoprotein H3 isoform a [Macaca
mulatta]
gi|410221428|gb|JAA07933.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410221430|gb|JAA07934.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258984|gb|JAA17458.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258988|gb|JAA17460.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302442|gb|JAA29821.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302446|gb|JAA29823.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342067|gb|JAA39980.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342069|gb|JAA39981.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|432106705|gb|ELK32357.1| Heterogeneous nuclear ribonucleoprotein H3 [Myotis davidii]
gi|440895821|gb|ELR47915.1| Heterogeneous nuclear ribonucleoprotein H3 [Bos grunniens mutus]
Length = 346
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>gi|395820622|ref|XP_003783662.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Otolemur garnettii]
Length = 346
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>gi|354477666|ref|XP_003501040.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
1 [Cricetulus griseus]
Length = 340
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>gi|348575706|ref|XP_003473629.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Cavia
porcellus]
Length = 372
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 42 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 101
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 102 KHKERIGHRYIEIFRSSRSEI 122
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 215 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 272
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 273 AVAAMSKDKNNMQHRYIELFLNS 295
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 43 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 102
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 103 HKERIGHRYIEIFRSSRSE 121
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 223 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 282
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 283 NMQHRYIELF 292
>gi|119637823|ref|NP_001073293.1| heterogeneous nuclear ribonucleoprotein H3 [Mus musculus]
gi|157818423|ref|NP_001102002.1| heterogeneous nuclear ribonucleoprotein H3 [Rattus norvegicus]
gi|148700117|gb|EDL32064.1| mCG11326, isoform CRA_a [Mus musculus]
gi|149043914|gb|EDL97365.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_c [Rattus norvegicus]
gi|182887935|gb|AAI60206.1| Heterogeneous nuclear ribonucleoprotein H3 [synthetic construct]
Length = 346
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>gi|14141159|ref|NP_067676.2| heterogeneous nuclear ribonucleoprotein H3 isoform b [Homo sapiens]
gi|291404273|ref|XP_002718502.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Oryctolagus cuniculus]
gi|296220548|ref|XP_002756353.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Callithrix jacchus]
gi|332218215|ref|XP_003258254.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Nomascus leucogenys]
gi|332834182|ref|XP_003312632.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Pan troglodytes]
gi|338716820|ref|XP_003363523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Equus caballus]
gi|345798943|ref|XP_860394.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 3
[Canis lupus familiaris]
gi|397520485|ref|XP_003830347.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Pan paniscus]
gi|402880660|ref|XP_003903916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Papio anubis]
gi|403273869|ref|XP_003928720.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Saimiri boliviensis boliviensis]
gi|410975231|ref|XP_003994037.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 3
[Felis catus]
gi|426364934|ref|XP_004049546.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Gorilla gorilla gorilla]
gi|7739443|gb|AAF68849.1|AF132361_1 hnRNP 2H9A [Homo sapiens]
gi|7739440|gb|AAF68847.1| hnRNP 2H9A [Homo sapiens]
gi|24981041|gb|AAH39824.1| Heterogeneous nuclear ribonucleoprotein H3 (2H9) [Homo sapiens]
gi|119574667|gb|EAW54282.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_c
[Homo sapiens]
gi|158256526|dbj|BAF84236.1| unnamed protein product [Homo sapiens]
gi|261861160|dbj|BAI47102.1| heterogeneous nuclear ribonucleoprotein H3 [synthetic construct]
gi|296472170|tpg|DAA14285.1| TPA: heterogeneous nuclear ribonucleoprotein H3 (2H9) [Bos taurus]
gi|380812320|gb|AFE78034.1| heterogeneous nuclear ribonucleoprotein H3 isoform b [Macaca
mulatta]
gi|410221432|gb|JAA07935.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410258986|gb|JAA17459.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410302444|gb|JAA29822.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
gi|410342071|gb|JAA39982.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) [Pan troglodytes]
Length = 331
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 174 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 231
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 232 AVAAMSKDKNNMQHRYIELFLNS 254
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 241
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 242 NMQHRYIELF 251
>gi|395820624|ref|XP_003783663.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Otolemur garnettii]
Length = 331
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 174 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 231
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 232 AVAAMSKDKNNMQHRYIELFLNS 254
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 241
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 242 NMQHRYIELF 251
>gi|354477668|ref|XP_003501041.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like isoform
2 [Cricetulus griseus]
gi|344247616|gb|EGW03720.1| Heterogeneous nuclear ribonucleoprotein H3 [Cricetulus griseus]
Length = 325
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 174 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 231
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 232 AVAAMSKDKNNMQHRYIELFLNS 254
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 241
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 242 NMQHRYIELF 251
>gi|392355325|ref|XP_003752006.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Rattus
norvegicus]
gi|148700118|gb|EDL32065.1| mCG11326, isoform CRA_b [Mus musculus]
gi|149043912|gb|EDL97363.1| heterogeneous nuclear ribonucleoprotein H3 (2H9) (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 331
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 174 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 231
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 232 AVAAMSKDKNNMQHRYIELFLNS 254
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 241
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 242 NMQHRYIELF 251
>gi|290977130|ref|XP_002671291.1| predicted protein [Naegleria gruberi]
gi|284084859|gb|EFC38547.1| predicted protein [Naegleria gruberi]
Length = 666
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-----------------DVLFVHK--NNKFTGEA 98
++++R +PF TE ++ FF GL I V FV N K TGE
Sbjct: 263 ILKMRNVPFSATEDEIETFFSGLTIATVQSRNQAEQSNETRRRKVYFVLNPMNGKRTGEV 322
Query: 99 FCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP---HRSIP 155
F Q+ A +RN++ + RY+E+F S E + + H + P
Sbjct: 323 FVEFTCHDQMLQAAKRNKEKIRNRYIELFHSSISELRASQYYIQQQQQQNYFPYQHITRP 382
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
R G + I+++ GLP S +++I + F LSE IH+ D TGEA
Sbjct: 383 RIS----GVQNRKSNFIVKIEGLPTSFEENEIAELFNGLSLSEAGIHLIFGEDECSTGEA 438
Query: 216 FVEFANAEDSKAAMAKDRMTLGS 238
FVEF N E A+ ++ T+ S
Sbjct: 439 FVEFVNEESFAKALEQNDTTISS 461
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 41/198 (20%)
Query: 71 VDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRS 129
VD A+ +DI+ L ++ K TGEA+ +++ A + +++N+G RY+E+F+S
Sbjct: 185 VDTAK---DMDII--LMLNYFGKSTGEAYVRFESEEELEKARKTMDKKNLGSRYIEIFKS 239
Query: 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMD 189
+E + R + R + ++ IL++R +PFSA +D+I
Sbjct: 240 TIEEMEHS-------------RRVLER------NLKNLNNSKILKMRNVPFSATEDEIET 280
Query: 190 FFKDFVLS--------EDS-------IHITMN-SDGRPTGEAFVEFANAEDSKAAMAKDR 233
FF ++ E S ++ +N +G+ TGE FVEF + A +++
Sbjct: 281 FFSGLTIATVQSRNQAEQSNETRRRKVYFVLNPMNGKRTGEVFVEFTCHDQMLQAAKRNK 340
Query: 234 MTLGSRYIELFPSSHEEM 251
+ +RYIELF SS E+
Sbjct: 341 EKIRNRYIELFHSSISEL 358
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVEF-ANAEDSKAAMA 230
L++RGLPFS+ + +I +FF + EDSI M+ R TG ++ F E +AA
Sbjct: 587 LKMRGLPFSSTEKEIAEFFAGYDFEEDSIRFKMDFKRNRQTGICYIRFRTKTEAERAANE 646
Query: 231 KDRMTLGSRYIELF 244
++R +G RYIELF
Sbjct: 647 RNRCNIGDRYIELF 660
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 26 QGPSFYGT--PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDI- 82
QG SF P + S + P Y P +++RGLPF TE ++AEFF G D
Sbjct: 554 QGQSFRNNLDPNTDSTIVKQPFKYKLFEHPER--TLKMRGLPFSSTEKEIAEFFAGYDFE 611
Query: 83 ---VDVLFVHKNNKFTGEAFCVLGYPLQVD---FALQRNRQNMGRRYVEVF 127
+ K N+ TG C + + + + A +RNR N+G RY+E+F
Sbjct: 612 EDSIRFKMDFKRNRQTG--ICYIRFRTKTEAERAANERNRCNIGDRYIELF 660
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 201 IHITMNSDGRPTGEAFVEFANAED-SKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
I + +N G+ TGEA+V F + E+ KA D+ LGSRYIE+F S+ EEM+ +
Sbjct: 193 IILMLNYFGKSTGEAYVRFESEEELEKARKTMDKKNLGSRYIEIFKSTIEEMEHS 247
>gi|410976696|ref|XP_003994750.1| PREDICTED: probable RNA-binding protein 19 [Felis catus]
Length = 994
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 96/202 (47%), Gaps = 20/202 (9%)
Query: 54 PPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVD 109
PP P VRLRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 283 PPTPHTVRLRGAPFNVTEKNVTEFLAPLRPVAIRIVRNAHGNK--TGYIFVDFSSEEEVK 340
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKA-IANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + N G R +E ++
Sbjct: 341 QALKCNREYMGGRYIEVFREKNAPTAKGPLKNSAKPWPG--------RTLGENEEEEDLA 392
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSK 226
+G L +R LP+S+ ++D+ F F LSE +H ++S +P G AFV F E +
Sbjct: 393 DSGRLFVRNLPYSSTEEDLEQLFSRFGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAV 450
Query: 227 AAMAK-DRMTLGSRYIELFPSS 247
A A+ D R + + PS+
Sbjct: 451 KAYAEVDGQVFQGRMLHVLPST 472
>gi|426255652|ref|XP_004021462.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 1
[Ovis aries]
Length = 346
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASMEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 189 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 246
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 247 AVAAMSKDKNNMQHRYIELFLNS 269
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASMEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 197 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 256
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 257 NMQHRYIELF 266
>gi|395741721|ref|XP_003780739.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H3 [Pongo abelii]
Length = 346
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L++ +HI + +DGR TGEA VEF ED
Sbjct: 197 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNQYEVHIDIGADGRATGEADVEFVTHED 254
Query: 225 SKAAM-AKDRMTLGSRYIELFPSS 247
+ AAM + ++ + RYIELF +S
Sbjct: 255 AVAAMFXRIKINMQHRYIELFLNS 278
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFC-VLGYPLQVDFALQRNR 116
V +RGLPF TE D+A FF L+ +V + + + + TGEA + + V R +
Sbjct: 205 VHMRGLPFRATENDIANFFSPLNQYEVHIDIGADGRATGEADVEFVTHEDAVAAMFXRIK 264
Query: 117 QNMGRRYVEVF 127
NM RY+E+F
Sbjct: 265 INMQHRYIELF 275
>gi|426255654|ref|XP_004021463.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform 2
[Ovis aries]
Length = 331
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF+ + + I +TM+ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASMEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFRSSRSEI 96
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 174 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 231
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 232 AVAAMSKDKNNMQHRYIELFLNS 254
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 17 TVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASMEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+FRS R E
Sbjct: 77 HKERIGHRYIEIFRSSRSE 95
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 182 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 241
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 242 NMQHRYIELF 251
>gi|301609832|ref|XP_002934459.1| PREDICTED: RNA-binding protein 12B-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 683
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 27/226 (11%)
Query: 46 AYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGY 104
YGYV L GLP+ E+DV EFFHG ++VD+ F V +N G A+ G
Sbjct: 179 GYGYVF---------LYGLPYTAGELDVKEFFHGFNVVDLHFSVRQNGVRDGNAYVKFGS 229
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS---IPR--AKS 159
AL R+ + +G RY+ V Q++ +A +D R S ++ PR +K+
Sbjct: 230 VQDAQAALSRDNEYIGHRYICVKLCNEQKWIEAGG--PTDERNESVRKNRQWSPRFPSKN 287
Query: 160 HDEGKDSAVHTG----------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209
H + +H L L + +S K DI FF D + + I + ++ +G
Sbjct: 288 HSRSRSPKIHRTRSRSPHNQQFYLHLLNMSYSVQKTDIKLFFGDPDIPDTQIKLLLDRNG 347
Query: 210 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
T E FV N + + + + L R + ++P + ++M E +
Sbjct: 348 VQTREGFVLIKNEKFYQKCLGLHKGLLNGREVWVYPIARKDMLELI 393
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 108/241 (44%), Gaps = 50/241 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP D+ FF GL I D VH GEAF + A+ R+
Sbjct: 28 VIRLQGLPVVAGSTDIRHFFSGLHIPDG-GVHITGGKIGEAFIIFATDEDARRAMSRSGG 86
Query: 118 NMGRRYVEVFRSKRQE--------------------------------YYKAIANEVSDV 145
+ + +E+F S + E Y K +AN+ S+V
Sbjct: 87 FIKKSRIELFLSSKAEMQHTLEMNRKGNKDLGPTPDISKLLNVMKKGIYQKNMANK-SNV 145
Query: 146 RGG-------SPHRSIPRAKSHDEG-----KDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193
G ++PR K + KD+ G + L GLP++AG+ D+ +FF
Sbjct: 146 EAGFDSSGAKYTEENMPRPKYQGKKDIWPLKDNGY--GYVFLYGLPYTAGELDVKEFFHG 203
Query: 194 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
F + + +H ++ +G G A+V+F + +D++AA+++D +G RYI + + ++ E
Sbjct: 204 FNVVD--LHFSVRQNGVRDGNAYVKFGSVQDAQAALSRDNEYIGHRYICVKLCNEQKWIE 261
Query: 254 A 254
A
Sbjct: 262 A 262
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HIT G GEAF+ FA ED++ AM++
Sbjct: 28 VIRLQGLPVVAGSTDIRHFFSGLHIPDGGVHIT----GGKIGEAFIIFATDEDARRAMSR 83
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ IELF SS EM L R
Sbjct: 84 SGGFIKKSRIELFLSSKAEMQHTLEMNR 111
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 8/199 (4%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
+ L + + + D+ FF DI D L + +N T E F ++ L +
Sbjct: 311 LHLLNMSYSVQKTDIKLFFGDPDIPDTQIKLLLDRNGVQTREGFVLIKNEKFYQKCLGLH 370
Query: 116 RQNMGRRYVEVFRSKRQEYYKAI-ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+ + R V V+ R++ + I ++E + + P+ K +D + +
Sbjct: 371 KGLLNGREVWVYPIARKDMLELIESSERQQLERNTSEDPSPKKKF----RDRSNLKRYMY 426
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
LR PF+ K ++ FF F + E I + +S G GEA V F + + A ++
Sbjct: 427 LRNFPFNVSKSEVQKFFAGFPVDEQDIFLLYDSRGVGLGEALVTFPSEHQAILAEGLNQQ 486
Query: 235 TLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 487 KFLGTEVLLRRISEEQMKE 505
>gi|326923399|ref|XP_003207924.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like
[Meleagris gallopavo]
Length = 323
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%)
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
H+ D+ ++RLRGLPF K++I+ FF+ + + I +T++ GR TGEAFV+F
Sbjct: 7 HNGPTDTTNDGTVVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQF 66
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 67 ASKEIAENALGKHKERIGHRYIEIFKSSKSEI 98
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVRLRGLPF C++ ++ +FF GL+IV L + + TGEAF + AL +
Sbjct: 19 VVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTLDYQGRSTGEAFVQFASKEIAENALGK 78
Query: 115 NRQNMGRRYVEVFRSKRQE 133
+++ +G RY+E+F+S + E
Sbjct: 79 HKERIGHRYIEIFKSSKSE 97
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PF A ++DI +FF L+ +HI + +DGR TGEA VEF ED+ AAM+KD+ +
Sbjct: 187 PFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNHMQH 244
Query: 239 RYIELFPSS 247
RYIELF +S
Sbjct: 245 RYIELFLNS 253
>gi|157883792|pdb|2HGM|A Chain A, Nmr Structure Of The Second Qrrm Domain Of Human Hnrnp F
gi|297787487|pdb|2KG0|A Chain A, Structure Of The Second Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 126
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 148 GSPHRSIPRAKSHDEGKDSA--VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205
GS S+ + G +SA + G +RLRGLPF K++I+ FF + + I + +
Sbjct: 18 GSHMASMTGGQQMGRGSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPV 77
Query: 206 NSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ +G+ TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS EE+
Sbjct: 78 DPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEV 123
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF CT+ ++ +FF GL+IV L V K TGEAF + AL ++
Sbjct: 45 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 104
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+EVF+S ++E
Sbjct: 105 KERIGHRYIEVFKSSQEE 122
>gi|148667169|gb|EDK99585.1| mCG133010, isoform CRA_b [Mus musculus]
Length = 149
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 32/176 (18%)
Query: 39 FMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNK 93
M P GYV V+LRGLP+ C+ DV F I D V F++ + +
Sbjct: 1 MMLGPEGGEGYV--------VKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGR 52
Query: 94 FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 153
+GEAF L V AL+++R++MG RY+EVF+S R E + +
Sbjct: 53 QSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKH------------- 99
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209
S DSA + G +RLRGLPF K++I+ FF + + I + ++ +G
Sbjct: 100 -----SGPNSADSA-NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEG 149
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVL 97
>gi|194376648|dbj|BAG57470.1| unnamed protein product [Homo sapiens]
Length = 404
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K A+
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
KDR T+G RY+E+F S+ EMD
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEMD 94
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 245 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 302
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 303 DKANMQHRYVELFLNS 318
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 72 KKDRETMGHRYVEVFKSNSVE 92
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 245 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 304
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 305 ANMQHRYVELF 315
>gi|395849855|ref|XP_003797528.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like [Otolemur
garnettii]
Length = 243
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 86/192 (44%), Gaps = 48/192 (25%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTG-EAFCVL--GYPLQVDFALQRN 115
VRLRGLPF CT+ ++ +FF G ++G E + L GY D
Sbjct: 45 VRLRGLPFGCTKEEIVQFFSGA------------GYSGYEEYSGLSDGYGFTTDL----- 87
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
GR + D R G ++ H + +
Sbjct: 88 ---FGRDLSYCLSG------------MYDHRYGDGEFAVQSTTGH-----------CVHM 121
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 235
RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+KDR
Sbjct: 122 RGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRAN 179
Query: 236 LGSRYIELFPSS 247
+ RYIELF +S
Sbjct: 180 MQHRYIELFLNS 191
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 19/83 (22%)
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
AL+++R++MG +Y+EVF+S R E + + S P + DSA +
Sbjct: 1 MALKKDRESMGHQYIEVFKSHRTEMDWVLKH------------SGPNS------ADSA-N 41
Query: 170 TGILRLRGLPFSAGKDDIMDFFK 192
G +RLRGLPF K++I+ FF
Sbjct: 42 DGFVRLRGLPFGCTKEEIVQFFS 64
>gi|226487872|emb|CAX75601.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 153
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLPFSA DDI++FFKD + + I+ +GR GEAF+E + +D + AM
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
A +G RYIE+F S EE++ A+
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAM 89
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVHK-NNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLPF D+ FF I + F N + GEAF L + A+
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ ++MGRRY+EVF S + E+++ G P S P + H +
Sbjct: 64 AHHNEHMGRRYIEVFDS--------CSEELNNAMGSRPFSS-PNRREH-----------V 103
Query: 173 LRLRGLPFSAGKDDIMDFFK 192
+RLRGLP+ K +I FF+
Sbjct: 104 VRLRGLPYDTEKKEIYAFFQ 123
>gi|167535939|ref|XP_001749642.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771790|gb|EDQ85451.1| predicted protein [Monosiga brevicollis MX1]
Length = 948
Score = 77.8 bits (190), Expect = 5e-12, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 27/190 (14%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQ 113
PV+RLRGL ++ +V GLD+ D F+ ++ K GEA+ ++G P A
Sbjct: 477 PVIRLRGLKWEWAAKEVLPMLEGLDVQADSGFICYNRQGKPIGEAYFIMGSPEAAQAAFA 536
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
R+ +G RY+EVF Q YY+A RA S D DS L
Sbjct: 537 RSGAMLGDRYIEVFVESPQTYYRA------------------RALSKDAANDSQY----L 574
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+ GLP K D+ +F + + + + N +GR G+A V ED++ A+ K++
Sbjct: 575 SVHGLPLDTTKHDLEEFMAPAQVLD--VMLECNPEGRCEGKACVLVCTPEDARLALEKNK 632
Query: 234 MTLGSRYIEL 243
R +++
Sbjct: 633 TEFKGRSVDI 642
Score = 73.6 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 23/197 (11%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ + GLP D T+ D+ EF ++DV+ + + G+A ++ P AL++N+
Sbjct: 574 LSVHGLPLDTTKHDLEEFMAPAQVLDVMLECNPEGRCEGKACVLVCTPEDARLALEKNKT 633
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
R V D+ G+ K + + + T + RLRG
Sbjct: 634 EFKGRSV-------------------DIEMGTADTWNDLLKWYQDQLLRSTDTLVARLRG 674
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA---AMAKDRM 234
LP+S +DD+ DF + ++ +++ + +GRPTG A+ F+ + S+ AM + +
Sbjct: 675 LPWSCSRDDVYDFLQPSGINANNVFVCHALNGRPTGTAYAVFSGSTASQCFDLAMRQHKS 734
Query: 235 TLGSRYIELFPSSHEEM 251
+G RYIE+ S+ EM
Sbjct: 735 KIGDRYIEVNRSTVAEM 751
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 155 PRAKSHDEGKDSAV-HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
P AK D V + ++RLRGL + +++ + + DS I N G+P G
Sbjct: 460 PSAKRKKVKIDPDVLSSPVIRLRGLKWEWAAKEVLPMLEGLDVQADSGFICYNRQGKPIG 519
Query: 214 EAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
EA+ + E ++AA A+ LG RYIE+F S
Sbjct: 520 EAYFIMGSPEAAQAAFARSGAMLGDRYIEVFVES 553
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFH--GLDIVDVLFVHK-NNKFTGEAFCVLGYPLQ---VDFA 111
V RLRGLP+ C+ DV +F G++ +V H N + TG A+ V D A
Sbjct: 669 VARLRGLPWSCSRDDVYDFLQPSGINANNVFVCHALNGRPTGTAYAVFSGSTASQCFDLA 728
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEV 142
+++++ +G RY+EV RS E + I ++
Sbjct: 729 MRQHKSKIGDRYIEVNRSTVAEMLRDIFGDI 759
>gi|392352553|ref|XP_003751242.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 955
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 43 PPPAYGYVSQP-----PPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNK 93
P A G V +P P P V+LRG PF+ TE +V EF L V + V H N
Sbjct: 274 PQEAAGKVEKPASQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNK- 332
Query: 94 FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 153
TG F L +V AL+ NR+ MG RY+EVFR K + S RG S
Sbjct: 333 -TGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREK----------QASAARGAPKSSS 381
Query: 154 IP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-D 208
P R E ++ +G L +R L +++ ++D+ F + LSE +H ++S
Sbjct: 382 APWQGRTLGEHEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--LHYPIDSLT 439
Query: 209 GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247
+P G AFV F E + A A+ D R + + PS+
Sbjct: 440 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 479
>gi|112491340|pdb|2HGL|A Chain A, Nmr Structure Of The First Qrrm Domain Of Human Hnrnp F
gi|297787485|pdb|2KFY|A Chain A, Nmr Structure Of The First Qrrm Of Hnrnp F In Complex With
Agggau G- Tract Rna
Length = 136
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + + +H +GR +GEAFVE + +D K A+
Sbjct: 46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 105
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 106 KKDRESMGHRYIEVFKSHRTEMDWVL 131
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 13/101 (12%)
Query: 38 SFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNN 92
S M P G+V V+LRGLP+ C+ DV F I D V F++ +
Sbjct: 34 SMMLGPEGGEGFV--------VKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREG 85
Query: 93 KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 133
+ +GEAF LG V AL+++R++MG RY+EVF+S R E
Sbjct: 86 RQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTE 126
>gi|18266700|ref|NP_543172.1| heterogeneous nuclear ribonucleoprotein H [Rattus norvegicus]
gi|18104446|gb|AAL59557.1| Ratsg1 [Rattus norvegicus]
Length = 372
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
MG RYVEVF+S E + + + S D D G +RLRGL
Sbjct: 1 MGHRYVEVFKSNNVEMDWVLKHTGPN--------------SPDTAND-----GFVRLRGL 41
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238
PF +++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G
Sbjct: 42 PFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGH 101
Query: 239 RYIELFPSSHEEM 251
RYIE+F SS E+
Sbjct: 102 RYIEIFKSSRAEV 114
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI DGR TGEA VEFA ED+ AAM+K
Sbjct: 213 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSK 270
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 271 DKANMQHRYVELFLNS 286
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C+E ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 36 VRLRGLPFGCSEEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 95
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 96 KERIGHRYIEIFKSSRAE 113
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + TGEA A+ +++
Sbjct: 213 CVHMRGLPYRATENDIYNFFSPLNPVRVHIETGPDGRVTGEADVEFATHEDAVAAMSKDK 272
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 273 ANMQHRYVELF 283
>gi|428180581|gb|EKX49448.1| hypothetical protein GUITHDRAFT_104977 [Guillardia theta CCMP2712]
Length = 443
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
T ++LRGLP+ A D+++FFK + E+SI +NS+GRP+GEA+V F ED+ KA
Sbjct: 354 TTKVKLRGLPYGATTADVLNFFKGLGVLEESITFGINSEGRPSGEAWVSFNRIEDARKAV 413
Query: 229 MAKDRMTLGSRYIELF 244
KDR +G RY+ELF
Sbjct: 414 REKDRHHMGDRYVELF 429
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLF-VHKNNKFTGEAFCVLGYPLQVDFAL-QR 114
V+LRGLP+ T DV FF GL +++ + F ++ + +GEA+ A+ ++
Sbjct: 357 VKLRGLPYGATTADVLNFFKGLGVLEESITFGINSEGRPSGEAWVSFNRIEDARKAVREK 416
Query: 115 NRQNMGRRYVEVF 127
+R +MG RYVE+F
Sbjct: 417 DRHHMGDRYVELF 429
>gi|405977012|gb|EKC41485.1| Dual specificity mitogen-activated protein kinase kinase 5
[Crassostrea gigas]
Length = 672
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI---VDVLF----VHKNNKFTGEAFCVLGYPLQVDF 110
+ LRGLP+ T DV FF + VDVL VH + + G F + + D
Sbjct: 17 TIMLRGLPYKATAADVLRFFKVPVMFVDVDVLGGKDGVHLHARTMGTCFVDIN---KQDL 73
Query: 111 ALQR--NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
A + N + +G RY+E+ E +D + P + P + ++G
Sbjct: 74 AKAKKYNLREIGNRYIEIL-------------EETDFKRIYPGYTPPTPQ--EKGT---- 114
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+++L+GLPF K DI FF F ++ I + TGEA+V+FA+ E ++ A
Sbjct: 115 ---LVKLKGLPFGCTKQDIATFFSGFEIAPHGIMKPVKRHASLTGEAYVKFASKEIAEKA 171
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALS 256
+ + +GSRYI ++P+ E+D +S
Sbjct: 172 LTRHNEYMGSRYINVYPTDALEVDHKMS 199
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 54 PPFP-----VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYP 105
PP P +V+L+GLPF CT+ D+A FF G +I + V ++ TGEA+
Sbjct: 106 PPTPQEKGTLVKLKGLPFGCTKQDIATFFSGFEIAPHGIMKPVKRHASLTGEAYVKFASK 165
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK 164
+ AL R+ + MG RY+ V+ + E ++ V + PH ++ D GK
Sbjct: 166 EIAEKALTRHNEYMGSRYINVYPTDALEVDHKMS--VPEFTMSPPHAVFVHSRKSDLGK 222
>gi|444525890|gb|ELV14185.1| RNA-binding protein 12B [Tupaia chinensis]
Length = 1012
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 19/211 (9%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP-----------RAKSHDEGK 164
R MG R++EV + Q++ N V + G P RS R SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIDLGGNAVKE--GDVPVRSEEQSPKGINDRHFRKWSHSKSP 272
Query: 165 DSAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
S L L+ LP S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 273 RSTRSRSPLGFYVHLKNLPLSINKRDLRNFFRDTDLANEQIRF-LYKDERRTRYAFVTFK 331
Query: 221 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A++ + L R + + P S ++M
Sbjct: 332 TLKDYNTALSLHKTVLQYRPVHVDPVSRKQM 362
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 95/233 (40%), Gaps = 42/233 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VDV FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGG-VHIIGGEVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + S G GS I K
Sbjct: 63 LIKNSSVELFLSSKAEMQKTIEMKRSGHIGRGRLGSGASGVGSLSNFIEAIKEETSNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GPSINQDAGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQW 233
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 7/188 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ LP + D+ FF D+ + + F++K+ + T AF + AL ++
Sbjct: 285 VHLKNLPLSINKRDLRNFFRDTDLANEQIRFLYKDERRTRYAFVTFKTLKDYNTALSLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP--RAKSHDEGKDSAVHTGILR 174
+ R V V R++ K IA R GS + P + + + S I
Sbjct: 345 TVLQYRPVHVDPVSRKQMLKFIAC-YEKKRPGSVEKERPGHLLQKYSQQNYSGQKLCIY- 402
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 233
+R PF K ++ FF DF L+E+ I++ + G GEA V+F + E + KA R
Sbjct: 403 IRNFPFDVTKVEVQKFFADFSLAEEDIYLLYDDKGVGLGEALVKFKSEEQAVKAERLNRR 462
Query: 234 MTLGSRYI 241
LG+ +
Sbjct: 463 RFLGTEVL 470
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG D+ FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ + +ELF SS EM + + R
Sbjct: 60 SGGLIKNSSVELFLSSKAEMQKTIEMKR 87
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 938 IKIMNLPFKANVNEILDFFHGYRIVPDSVSIQYNDQGLPTGEAIVAMINYNEAMAAIKDL 997
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 998 NDR-PVGPRKVKL 1009
>gi|71896463|ref|NP_001026115.1| RNA-binding protein 12B [Gallus gallus]
gi|53136630|emb|CAG32644.1| hypothetical protein RCJMB04_31o3 [Gallus gallus]
Length = 698
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 31/220 (14%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNM 119
LRG+P+ TE V +F G+ + V+ + H+N G P L+R+RQ M
Sbjct: 178 LRGIPYSATEDAVRDFLSGIRVDGVILIKHRNGLNNGNCLVKFATPGDALEGLKRHRQYM 237
Query: 120 GRRYVEVFRSKRQEYYKA-------------IANEVSDVRGG-----------SPHRSIP 155
G+R++E+ + + + + + E S G SP R
Sbjct: 238 GQRFIEISPTTEERWIEYGGRVDMPNEMDHFLCKEHSPRSSGYMHARKHSHSRSPRRQRT 297
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
R++S G++ +H LR L + K D+ +FF D +S I I R T +A
Sbjct: 298 RSQS-PSGQEYYIH-----LRNLSTNVEKRDLREFFPDLDISNKQIKILSEKHQRRTRDA 351
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
FV N D +AA+ R L +R + +FP S + M + L
Sbjct: 352 FVMLKNERDYQAALECHRKVLLNRSVYIFPISRKSMLKML 391
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 16/204 (7%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
+ LR L + + D+ EFF LDI + + K+ + T +AF +L AL+ +
Sbjct: 309 IHLRNLSTNVEKRDLREFFPDLDISNKQIKILSEKHQRRTRDAFVMLKNERDYQAALECH 368
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIAN---EVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
R+ + R V +F R+ K + + + S RG P ++I KS+ EG H+G+
Sbjct: 369 RKVLLNRSVYIFPISRKSMLKMLDSYERKRSQERG-HPGQAITE-KSYREG-----HSGL 421
Query: 173 ---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+R PF K ++ FF+ F + ED I++ + G GEA V+F + E + A
Sbjct: 422 KMCAYVRNFPFDVTKVEVQRFFERFDIDEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAE 481
Query: 230 AKDRMTLGSRYIELFPSSHEEMDE 253
+ + L S E+M +
Sbjct: 482 NLNHQRFLGTEVLLRLISEEQMQK 505
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII----GGEMGEAFIIFATDEDARRAMSC 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ IELF SS EM + R
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSR 87
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L LRG+P+SA +D + DF + D + + + +G G V+FA D+ + +
Sbjct: 176 LFLRGIPYSATEDAVRDFLSGIRV--DGVILIKHRNGLNNGNCLVKFATPGDALEGLKRH 233
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R +G R+IE+ P++ E E
Sbjct: 234 RQYMGQRFIEISPTTEERWIE 254
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK- 231
+RL+ LPF A ++I+DFF + + +S+ + N G P+G+A V N E++ A+ +
Sbjct: 624 IRLKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINEL 683
Query: 232 -DRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 684 NDR-PIGPRKVKL 695
>gi|449666027|ref|XP_002162990.2| PREDICTED: probable RNA-binding protein 19-like [Hydra
magnipapillata]
Length = 914
Score = 77.0 bits (188), Expect = 8e-12, Method: Composition-based stats.
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 16/198 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V++RG+PF C+E +V EFF L I D+ F +K+ K +G AF V AL++++Q
Sbjct: 307 VKMRGIPFKCSEKEVIEFFKPLIIDDIRFPKNKDGKSSGYAFVDFKTIEDVKSALKKDKQ 366
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
+ RY+E+F N++ +++ ++ + DE + TG L +R
Sbjct: 367 KIQGRYIELFP----------VNDLENLKQNDFNKKW--TQKGDEADEDISDTGRLFVRN 414
Query: 178 LPFSAGKDDIMDFFKDF-VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMT 235
L ++ +D + + F F L E ++ I NS+ + TG AFV F A+ + AM+K D
Sbjct: 415 LSYTCTEDSLTNLFSQFGPLVEINLPIDKNSN-KTTGFAFVTFMMADHAIKAMSKLDGSI 473
Query: 236 LGSRYIELFPSSHEEMDE 253
R + + P +++ E
Sbjct: 474 FEGRILHILPGKSKKVKE 491
Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D + + +++RG+PF + ++++FFK ++ D I N DG+ +G AFV+F ED
Sbjct: 299 DQDIKSMTVKMRGIPFKCSEKEVIEFFKPLII--DDIRFPKNKDGKSSGYAFVDFKTIED 356
Query: 225 SKAAMAKDRMTLGSRYIELFP 245
K+A+ KD+ + RYIELFP
Sbjct: 357 VKSALKKDKQKIQGRYIELFP 377
>gi|56753603|gb|AAW25004.1| SJCHGC02919 protein [Schistosoma japonicum]
gi|226487876|emb|CAX75603.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 137
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R+RGLPFSA DDI++FFKD + + I+ +GR GEAF+E + +D + AM
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
A +G RYIE+F S EE++ A+
Sbjct: 64 AHHNEHMGRRYIEVFDSCSEELNNAM 89
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 65/141 (46%), Gaps = 25/141 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVHK-NNKFTGEAFCVLGYPLQVDFAL 112
VVR+RGLPF D+ FF I + F N + GEAF L + A+
Sbjct: 4 VVRIRGLPFSANADDIINFFKDCTIRGGKRGIYFPQGPNGRSNGEAFIELDSKDDKEKAM 63
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ ++MGRRY+EVF S + E+++ G P S P + H +
Sbjct: 64 AHHNEHMGRRYIEVFDS--------CSEELNNAMGSRPFSS-PNRREH-----------V 103
Query: 173 LRLRGLPFSAGKDDIMDFFKD 193
+RLRGLP+ K +I FF D
Sbjct: 104 VRLRGLPYDTEKKEIYAFFND 124
>gi|449284118|gb|EMC90699.1| RNA-binding protein 12B [Columba livia]
Length = 698
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 21/211 (9%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNM 119
LRG+P+ TE +V FF G+ + V+ + H+N G+ P LQR+RQ M
Sbjct: 178 LRGIPYSATEDEVRAFFSGIHVDGVILIKHRNGLSNGDCLVKFATPGDALEGLQRHRQYM 237
Query: 120 GRRYVEVFRSKRQEYYK-----AIANEVSD--VRGGSP------------HRSIPRAKSH 160
G+R++E+ S + + + + NE+ SP H PR +
Sbjct: 238 GQRFIEISPSTEERWIEYGGTVDMPNEMDHFLCEDRSPRSSGYMHSRKHSHSRSPR-RQR 296
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
+ + LR L + K D+ DFF D + I + + R T +AFV
Sbjct: 297 TRSRSPPTQEYYIHLRNLSTNVEKRDLRDFFPDLDICSKQIKLLTDKHQRRTRDAFVLLR 356
Query: 221 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ D +AA+ R L +R + +FP S + M
Sbjct: 357 SERDYQAALECHRKVLLNRPVYIFPISKKSM 387
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 14/203 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
+ LR L + + D+ +FF LDI L K+ + T +AF +L AL+ +
Sbjct: 309 IHLRNLSTNVEKRDLRDFFPDLDICSKQIKLLTDKHQRRTRDAFVLLRSERDYQAALECH 368
Query: 116 RQNMGRRYVEVFRSKRQEYYKAI--ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-- 171
R+ + R V +F ++ K I P ++IP K + EG H+G
Sbjct: 369 RKVLLNRPVYIFPISKKSMLKIIDSCERRRSQDRDHPGQAIPE-KGYREG-----HSGPK 422
Query: 172 -ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+ +R PF K ++ FF F + ED I++ + G GEA V+F + E + A
Sbjct: 423 TCVYVRNFPFDVSKIEVQKFFVRFDIDEDDIYLLCDDKGVGLGEALVKFKSEEQAMKAEN 482
Query: 231 KDRMTLGSRYIELFPSSHEEMDE 253
+R I + S ++M++
Sbjct: 483 LNRRRFLGMEILIRLISEDQMEK 505
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ IELF SS EM + R
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSR 87
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L LRG+P+SA +D++ FF + D + + + +G G+ V+FA D+ + +
Sbjct: 176 LYLRGIPYSATEDEVRAFFSG--IHVDGVILIKHRNGLSNGDCLVKFATPGDALEGLQRH 233
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R +G R+IE+ PS+ E E
Sbjct: 234 RQYMGQRFIEISPSTEERWIE 254
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
H +RL+ LPF A ++I+DFF + + +S+ + N G P+G+A + N E++ AA
Sbjct: 620 HGVPIRLKNLPFKATPNEILDFFYGYRVIPESVCVQYNKQGLPSGDAIIAMTNYEEAMAA 679
Query: 229 MAK--DRMTLGSRYIEL 243
+ + DR +G R ++L
Sbjct: 680 INELNDR-PIGPRKVKL 695
>gi|428180638|gb|EKX49505.1| hypothetical protein GUITHDRAFT_105029 [Guillardia theta CCMP2712]
Length = 374
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 5/167 (2%)
Query: 81 DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ--NMGRRYVEVFRSKRQEYYKAI 138
++ L NNK TG ++ V + ++Q ++G V +S++ +
Sbjct: 196 ELQQSLSSGSNNKVTGGKPPIVATSNGVQQSTSESQQEASIGPSAVSGNKSEQSLKKQGE 255
Query: 139 ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
+ S+ RG +S A S G D + ++LRGLPF A D+M F K + E
Sbjct: 256 TAKRSETRGWE-TQSKALAASRSSGVD-GKYPATVKLRGLPFGATSLDVMGFLKGYNAVE 313
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRYIELF 244
SI N DGRP+GEA+V F E++K + KDR LG+RY+ELF
Sbjct: 314 SSIRFGNNQDGRPSGEAWVSFNRLEEAKRVVREKDRHHLGNRYVELF 360
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN---KFTGEAFCVLGYPLQVDFAL-Q 113
V+LRGLPF T +DV F G + V+ NN + +GEA+ + + +
Sbjct: 287 TVKLRGLPFGATSLDVMGFLKGYNAVESSIRFGNNQDGRPSGEAWVSFNRLEEAKRVVRE 346
Query: 114 RNRQNMGRRYVEVF 127
++R ++G RYVE+F
Sbjct: 347 KDRHHLGNRYVELF 360
>gi|344273251|ref|XP_003408437.1| PREDICTED: RNA-binding protein 12B-like [Loxodonta africana]
Length = 971
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGG-VHIIGGEVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS-PHR-------------SIPRAKSHDEG 163
+ YVE+F S + E K I + +D G P ++ S+ E
Sbjct: 63 LIKDSYVELFLSSKAEMQKTIEMKRTDRTGRERPESGGSGAGSLSNFAGAVKEEASNSEY 122
Query: 164 KDSAVHTG--------------------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
+D+ HT L LRGLP+ +DD+ FF + D +
Sbjct: 123 QDAEFHTNGTGRGDLKPRSTRPARAKNPYLFLRGLPYLVNEDDVRVFFAGLCV--DGVIF 180
Query: 204 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
DGR G+A V+FA+ D+ + R +GSR+IE+ SS ++
Sbjct: 181 LKLHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQSSEQQW 228
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 13/203 (6%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ + + G+A + L+ +
Sbjct: 150 PYLFLRGLPYLVNEDDVRVFFAGLCVDGVIFLKLHDGRNNGDAIVKFASCIDASGGLKCH 209
Query: 116 RQNMGRRYVEVFRSKRQEYYKA---------IANEVSDVRGGSPHRSIPR--AKSHDEGK 164
R MG R++EV +S Q++ E S RG + S R +KS +
Sbjct: 210 RSFMGSRFIEVMQSSEQQWIHCGGKQDDVPMRTEEHSPARGINDRHSRKRSHSKSPRRTR 269
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
+ + L+ L K D+ FF+D LS + I ++ R T A V F +D
Sbjct: 270 SRSPVGHYVHLKNLSLGISKRDLKSFFRDTDLSNEQITFLYKNEKR-TRYALVMFKTLKD 328
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
A+A + + R I + P S
Sbjct: 329 FYTALALHKTIIQYRPIHIDPIS 351
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ Y+ELF SS EM + + R
Sbjct: 60 SGGLIKDSYVELFLSSKAEMQKTIEMKR 87
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L ++ D+ FF D+ + + F++KN K T A + AL ++
Sbjct: 278 VHLKNLSLGISKRDLKSFFRDTDLSNEQITFLYKNEKRTRYALVMFKTLKDFYTALALHK 337
Query: 117 QNMGRRYVEVFRSKRQ------EYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
+ R + + R+ EYY+ R GS + P S ++
Sbjct: 338 TIIQYRPIHIDPISRKRVLRLMEYYET-------KRPGSVEKERPGHVSQKYSEEGYSGQ 390
Query: 171 GI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+ + +R PF K ++ FF DF L ED I++ + G GEA V+F + E + KA
Sbjct: 391 KVCIYIRNFPFDVTKVEVQKFFADFSLEEDDIYLLYDGKGVGLGEALVKFRSEEQAVKAE 450
Query: 229 MAKDRMTLGSRYI 241
R LG+ +
Sbjct: 451 RLNRRRFLGTEVL 463
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G P GEA V N ++ AA+
Sbjct: 897 IKIMNLPFKANVNEILDFFHGYKVIPDSVSIQYNEKGLPIGEAIVTMINYNEAVAAIKDL 956
Query: 231 KDRMTLGSRYIELF 244
DR +G R ++L
Sbjct: 957 NDR-PVGPRKVKLI 969
>gi|281203425|gb|EFA77625.1| hypothetical protein PPL_12232 [Polysphondylium pallidum PN500]
Length = 1794
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V +RG+P+ E + +FF + I+ + ++ + K +GEA+ A +
Sbjct: 1153 VLIRGMPWSTNEGQIRDFFKPVPIMPNGITILMNSHGKQSGEAYIEFVDEDAARKANDYH 1212
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
R+ M RY+EV R A+ + GG H + T I+RL
Sbjct: 1213 RKMMRHRYIEVLPKPRAAAIAALRRD-----GGQHHHVLA--------------TKIVRL 1253
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRM 234
RGLP++ D++ FF + +S ++I I + +GR TGE FVEF E + +A+
Sbjct: 1254 RGLPYNVTPADVISFFSGYAISGNNILIEKDYNGRVTGEGFVEFVTFETASSALKHLQHK 1313
Query: 235 TLGSRYIELFP 245
+ SRYIELFP
Sbjct: 1314 AISSRYIELFP 1324
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
V+LRGLP+ TE +A+FF GL + ++ +++ + +G A+ L D AL+RN+ +
Sbjct: 1721 VKLRGLPYSATEDSIADFFDGLGVTNIKIIYQRGRPSGLAYVSLSSQYDYDQALKRNKNH 1780
Query: 119 MGRRYV 124
MG V
Sbjct: 1781 MGSSVV 1786
Score = 45.4 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
++LRGLP+SA +D I DFF ++ I + GRP+G A+V ++ D A+ ++
Sbjct: 1721 VKLRGLPYSATEDSIADFFDGLGVTNIKI---IYQRGRPSGLAYVSLSSQYDYDQALKRN 1777
Query: 233 RMTLGSRYI 241
+ +GS +
Sbjct: 1778 KNHMGSSVV 1786
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHK--NNKFTGEAFCVLGYPLQVDFALQR 114
+VRLRGLP++ T DV FF G I + + + K N + TGE F AL+
Sbjct: 1250 IVRLRGLPYNVTPADVISFFSGYAISGNNILIEKDYNGRVTGEGFVEFVTFETASSALKH 1309
Query: 115 -NRQNMGRRYVEVF 127
+ + RY+E+F
Sbjct: 1310 LQHKAISSRYIELF 1323
>gi|321446634|gb|EFX60905.1| hypothetical protein DAPPUDRAFT_122743 [Daphnia pulex]
Length = 169
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFAN-AE 223
S + ++ +RGLPF+A DI+ FF F L+ D I I N+DGRP+GEA V F N AE
Sbjct: 87 SGLPGTLVIMRGLPFTASCSDILQFFSGFSELTPDCIQIHRNNDGRPSGEAVVNFPNRAE 146
Query: 224 DSKAAMAKDRMTLGSRYIELF 244
+A K+R +G+RYIELF
Sbjct: 147 AERAIAEKNRQNIGTRYIELF 167
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 9/79 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLD--IVDVLFVHKNN--KFTGEAFCVLGYPLQVDF--- 110
+V +RGLPF + D+ +FF G D + +H+NN + +GEA V+ +P + +
Sbjct: 93 LVIMRGLPFTASCSDILQFFSGFSELTPDCIQIHRNNDGRPSGEA--VVNFPNRAEAERA 150
Query: 111 ALQRNRQNMGRRYVEVFRS 129
++NRQN+G RY+E+F +
Sbjct: 151 IAEKNRQNIGTRYIELFMT 169
>gi|427792669|gb|JAA61786.1| Putative splicing factor hnrnp-f, partial [Rhipicephalus
pulchellus]
Length = 302
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 39/212 (18%)
Query: 73 VAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129
+ GL+IV L + TGEAF + A+ ++++ +G RY+E+F+S
Sbjct: 19 ILGLIEGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKS 78
Query: 130 KRQEYYKAIANEVSDVR-----------------GGSPHR-SIPRAKSHDEG---KDSAV 168
QE A+ V + GG P R + R + G +D
Sbjct: 79 SLQEIRSAVGMGVPKMMRPMGSARPGPYDRAERFGGGPSRYGMGRGGRNFRGFVEEDGYA 138
Query: 169 HTG-------------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
G + +RGLPF A + DI +FF+ ++ ++H+ GRP+GE
Sbjct: 139 DFGGSGGGARFSATGHFVHMRGLPFRATERDIFEFFQP--MNPINVHLIYEDSGRPSGEC 196
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
VEFA E++ AM+KD+ + RYIELF +S
Sbjct: 197 DVEFATHEEAVKAMSKDKAHMQHRYIELFLNS 228
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246
I+ + + + I + + GR TGEAFV+FA + ++ AM K + +G RYIE+F S
Sbjct: 19 ILGLIEGLEIVPNGITLPTDYQGRSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKS 78
Query: 247 SHEEMDEALSRG 258
S +E+ A+ G
Sbjct: 79 SLQEIRSAVGMG 90
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+ EFF ++ ++V +++++ + +GE + A+ +++
Sbjct: 156 VHMRGLPFRATERDIFEFFQPMNPINVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKA 215
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 216 HMQHRYIELF 225
>gi|345793203|ref|XP_544177.3| PREDICTED: RNA-binding protein 12B [Canis lupus familiaris]
Length = 994
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDV------RGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + Q++ + N V +V SP R I R +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEVDIPMRTEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D +A+ + L R + + P S ++M
Sbjct: 334 LKDYNSALGLHKTVLQYRPVHIDPVSRKQM 363
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 96/235 (40%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I +D G GS + K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMRRTDRIGRERPGSGASGAGSLSNFVEAIKEEASNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMRR 87
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 13/191 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNSALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAI-----ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
+ R V + R++ K I VS + H S ++ G+ ++
Sbjct: 346 TVLQYRPVHIDPVSRKQMLKFIECYEKKRPVSVEKERLGHVSQKYSQEGYPGQKLCIY-- 403
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMA 230
+R PF K ++ FF DF L ED I++ + G GEA V+F E + KA
Sbjct: 404 ---IRNFPFDVTKVEVQKFFADFSLGEDDIYLLYDDKGVGLGEALVKFKTEEQAVKAERL 460
Query: 231 KDRMTLGSRYI 241
R LG+ +
Sbjct: 461 NRRRFLGTEVL 471
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 920 IKIMNLPFKANVNEILDFFHGYRILPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 979
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 980 NDR-PVGPRKVKL 991
>gi|348551182|ref|XP_003461409.1| PREDICTED: probable RNA-binding protein 19-like [Cavia porcellus]
Length = 961
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQR 114
V+LRG PF+ TE +V EF L V + V H N TG F +V AL+
Sbjct: 295 TVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSSEEEVKKALKC 352
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
NR+ MG RY+EVFR K+ KA S G R +E ++ +G L
Sbjct: 353 NREYMGGRYIEVFREKQAPVAKAPPKNSSKAWQG-------RTLGENEEEEDLADSGRLF 405
Query: 175 LRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK- 231
+R LP+++ ++D+ F + LSE +H +++ +P G AFV F E + A A+
Sbjct: 406 VRNLPYTSTEEDLEKLFSAYGPLSE--LHYPIDTLTKKPKGFAFVTFLFPEHAVKAYAEV 463
Query: 232 DRMTLGSRYIELFPSS 247
D R + + PS+
Sbjct: 464 DGQVFQGRMLHVLPST 479
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 148 GSPH-RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206
GSP R K+ ++ + + +T ++LRG PF+ + ++ +F L +I I N
Sbjct: 272 GSPQVRKAEVEKAANQKEPTTPYT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRN 327
Query: 207 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
+ G TG FV+F++ E+ K A+ +R +G RYIE+F
Sbjct: 328 AHGNKTGYIFVDFSSEEEVKKALKCNREYMGGRYIEVF 365
>gi|301762464|ref|XP_002916650.1| PREDICTED: RNA-binding protein 12B-like [Ailuropoda melanoleuca]
gi|281349037|gb|EFB24621.1| hypothetical protein PANDA_004747 [Ailuropoda melanoleuca]
Length = 985
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDV------RGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + Q++ + N V +V SP R I R +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEVDIPMRTEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVTFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S ++M
Sbjct: 334 LKDYNTALGLHKTVLQYRPVHIDPVSKKQM 363
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + +D G GS + K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRIGRERPGSGASGAGSLSNFVEAVKEETSNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 13/191 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + AL ++
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVTFKTLKDYNTALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAI-----ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
+ R V + +++ K I VS + H S ++ G+ ++
Sbjct: 346 TVLQYRPVHIDPVSKKQMLKFIECYEKKRPVSVEKERLGHISQKYSQEGYPGQKLCIY-- 403
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+R PF K ++ FF DF L+ED I++ + G GEA V+F E + A
Sbjct: 404 ---IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGIGLGEALVKFKTEEQAVKAERL 460
Query: 232 DRMT-LGSRYI 241
+R LG+ +
Sbjct: 461 NRQRFLGTEVL 471
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 911 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 970
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 971 NDR-PVGPRKVKL 982
>gi|159164063|pdb|2DB1|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein F Homolog
Length = 118
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED--SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++LRGLP+S +D+ +F D + + +H +GR +GEAFVE + +D K A+
Sbjct: 19 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLAL 78
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR ++G RYIE+F S EMD L
Sbjct: 79 KKDRESMGHRYIEVFKSHRTEMDWVL 104
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Query: 32 GTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVH- 89
G+ SS M P GYV V+LRGLP+ C+ DV F I D V VH
Sbjct: 1 GSSGSSGMMLGPEGGEGYV--------VKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHF 52
Query: 90 ---KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE 133
+ + +GEAF L V AL+++R++MG RY+EVF+S R E
Sbjct: 53 IYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE 99
>gi|395833986|ref|XP_003789998.1| PREDICTED: probable RNA-binding protein 19 [Otolemur garnettii]
Length = 959
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQR 114
V+LRG PF+ TE +V EF L V + V H N TG F +V AL+
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFNSEEEVKKALKC 352
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
NR+ MG RY+EVFR K K RG +P + R +E ++ +G L
Sbjct: 353 NREYMGGRYIEVFREKSSPMAKG-----PQKRGTTPWQG--RTLGDNEEEEDLADSGRLF 405
Query: 175 LRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS-KAAMAK 231
+R LP+++ ++D+ F F LSE IH ++S +P G AFV F E + KA
Sbjct: 406 VRNLPYTSTEEDLEKLFSKFGPLSE--IHYPIDSLIKKPKGFAFVTFMFPEHAVKAYTEV 463
Query: 232 DRMTLGSRYIELFPSS 247
D R + + PS+
Sbjct: 464 DGQVFQGRMLHVLPST 479
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 148 GSPHRSIPRAKSH---DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
G+ + RA++ ++ + + HT ++LRG PF+ + ++M+F L +I I
Sbjct: 270 GNKRAQVARAEAEKPANQKEPTTPHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIV 325
Query: 205 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
N+ G TG FV+F + E+ K A+ +R +G RYIE+F
Sbjct: 326 RNAHGNKTGYIFVDFNSEEEVKKALKCNREYMGGRYIEVF 365
>gi|326917887|ref|XP_003205226.1| PREDICTED: RNA-binding protein 12B-like [Meleagris gallopavo]
Length = 671
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 31/220 (14%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNM 119
LRG+P+ TE V +F G+ + V+ + H+N G P L+R+RQ M
Sbjct: 178 LRGIPYSATEDAVRDFLSGIRVDGVILIKHRNGLNNGNCLVKFATPGDALEGLKRHRQYM 237
Query: 120 GRRYVEVFRSKRQEYYKA-----IANEVSDV-------------------RGGSPHRSIP 155
G+R++E+ + + + + + NE+ SP R
Sbjct: 238 GQRFIEISPTTEERWIEYGGRVDMPNEMDHFFCKEHSPRSSGYMHARKHSHSRSPRRQRT 297
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
R++S G++ +H LR L + K D+ +FF D +S I I R T +A
Sbjct: 298 RSRS-PSGQEYYIH-----LRNLSTNVEKRDLREFFPDLDISNKQIKILSEKHQRRTRDA 351
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
FV N D +AA+ R L +R + +FP S + M + L
Sbjct: 352 FVMLRNERDYQAALECHRKVLLNRSVYIFPISRKSMLKML 391
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 20/206 (9%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
+ LR L + + D+ EFF LDI + + K+ + T +AF +L AL+ +
Sbjct: 309 IHLRNLSTNVEKRDLREFFPDLDISNKQIKILSEKHQRRTRDAFVMLRNERDYQAALECH 368
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP----RAKSHDEGKDSAVHTG 171
R+ + R V +F R+ K + S R S R+ P KS+ EG H+G
Sbjct: 369 RKVLLNRSVYIFPISRKSMLKMLD---SYERKRSQERAHPGQAITEKSYREG-----HSG 420
Query: 172 I---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KA 227
+ +R PF K ++ FF+ F + ED I++ + G GEA V+F + E + KA
Sbjct: 421 LKICAYVRNFPFDVTKVEVRRFFERFDIDEDDIYLLYDDKGVGLGEALVKFKSEEQAMKA 480
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDE 253
+ LG+ + L S E+M +
Sbjct: 481 ENLNHQRYLGTEVL-LRLISEEQMQK 505
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPADIRRFFLGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ IELF SS EM + R
Sbjct: 60 SGGFIKDSRIELFLSSKAEMQNTIEMSR 87
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L LRG+P+SA +D + DF + D + + + +G G V+FA D+ + +
Sbjct: 176 LFLRGIPYSATEDAVRDFLSGIRV--DGVILIKHRNGLNNGNCLVKFATPGDALEGLKRH 233
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R +G R+IE+ P++ E E
Sbjct: 234 RQYMGQRFIEISPTTEERWIE 254
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK- 231
+RL+ LPF A ++I+DFF + + +S+ + N G P+G+A V N E++ A+ +
Sbjct: 597 IRLKNLPFKATPNEILDFFYGYRVIPESVSVQYNEQGLPSGDAIVAMTNYEEAMTAINEL 656
Query: 232 -DRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 657 NDR-PIGPRKVKL 668
>gi|410562529|pdb|2LXU|A Chain A, Solution Nmr Structure Of The Eukaryotic Rna Recognition
Motif, Rrm1, From The Heterogeneous Nuclear
Ribonucleoprotein H From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8614a
Length = 108
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 9 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 68
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 69 KKDRETMGHRYVEVFKSNNVEMDWVL 94
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 9 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 68
Query: 113 QRNRQNMGRRYVEVFRSKRQE 133
+++R+ MG RYVEVF+S E
Sbjct: 69 KKDRETMGHRYVEVFKSNNVE 89
>gi|149052457|gb|EDM04274.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_c [Rattus
norvegicus]
Length = 134
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 24/139 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + + SP D+A + G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHTGPN----SP--------------DTA-NDGF 112
Query: 173 LRLRGLPFSAGKDDIMDFF 191
+RLRGLPF K++I+ FF
Sbjct: 113 VRLRGLPFGCSKEEIVQFF 131
>gi|148228969|ref|NP_001088073.1| RNA binding motif protein 19 [Xenopus laevis]
gi|52354760|gb|AAH82875.1| LOC494769 protein [Xenopus laevis]
Length = 920
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 18/211 (8%)
Query: 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN--NKFTGEAFCVLGYPLQV 108
++P V+LRG PF+ TE +V EF L V + NK TG F L +V
Sbjct: 273 NEPTTSYTVKLRGAPFNVTEQNVKEFLVPLKPVAIRIARNTYGNK-TGYVFVDLSSEEEV 331
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+RN+ MG RY+EVFR Y K+ + V+ + R + + ++
Sbjct: 332 QKALKRNKDYMGGRYIEVFRD---NYTKSPS-----VQSKAESRPWEQRDKQELQQEDLS 383
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSK 226
+G L +R LP+S +DD+ F + +SE IH ++S +P G AFV F E +
Sbjct: 384 ESGRLFVRNLPYSCTEDDLDKLFSKYGPISE--IHFPIDSLTKKPKGFAFVTFLITEHAV 441
Query: 227 AAMAK-DRMTLGSRYIELFPSS--HEEMDEA 254
A A+ D R + + PS+ EE++E+
Sbjct: 442 KAYAEVDGQIFQGRLLHVLPSAAKKEEVNES 472
>gi|159163272|pdb|1WEL|A Chain A, Solution Structure Of Rna Binding Domain In Np_006038
Length = 124
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
L+GLPF A ++DFFK + EDSI+I +G+ TGE FVEF N D KAA+ + +
Sbjct: 30 LKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQ 89
Query: 235 TLGSRYIELFPSSHEEMDEAL 255
+G+R+I++ P + + M E +
Sbjct: 90 YMGNRFIQVHPITKKGMLEKI 110
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQR 114
V L+GLPF+ V +FF LDIV D +++ N K TGE F AL R
Sbjct: 27 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR 86
Query: 115 NRQNMGRRYVEV 126
++Q MG R+++V
Sbjct: 87 HKQYMGNRFIQV 98
>gi|351694750|gb|EHA97668.1| Putative RNA-binding protein 19 [Heterocephalus glaber]
Length = 955
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 95/202 (47%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 284 EPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSSEEEV 341
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K+ K + G R +E ++
Sbjct: 342 KKALKCNREYMGGRYIEVFREKQVPMAKEPLKSSTKAWQG-------RMLGENEEEEDLA 394
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AFV F E +
Sbjct: 395 DSGRLFVRNLPYTSTEEDLEKLFSTYGPLSE--LHFPIDSLTKKPKGFAFVTFLFPEHAV 452
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA A D R + + PS+
Sbjct: 453 KAYSAVDGQVFQGRMLHVLPST 474
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 16/111 (14%)
Query: 146 RGGSP-HRSIP--------RAKSH---DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193
R SP HR+ P RA+S ++ + + HT ++LRG PF+ + ++ +F
Sbjct: 254 RAASPGHRAPPEHGRPQDSRAESEKPTNQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP 311
Query: 194 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
L +I I N+ G TG FV+F++ E+ K A+ +R +G RYIE+F
Sbjct: 312 --LKPVAIRIVRNAHGNKTGYIFVDFSSEEEVKKALKCNREYMGGRYIEVF 360
>gi|328717324|ref|XP_001952255.2| PREDICTED: hypothetical protein LOC100163028 [Acyrthosiphon pisum]
Length = 819
Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 63/209 (30%), Positives = 96/209 (45%), Gaps = 33/209 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFT--------GEAFCVLGYPLQVD 109
VVR+RGL + T + +F V FT G+A+ + +
Sbjct: 563 VVRMRGLSWSATTDAIIKFLSTSGEAKVKDGASRVHFTMTTEGRPNGQAYVDMESEENLK 622
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
AL+++ + M RY+ VF S R E + I S + D+ VH
Sbjct: 623 AALKQDGEYMRDRYINVFPSNRSEMEQDIKENGSKL-----------------DSDNCVH 665
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+RGLPF KDDI++FF+ + + I I+ +S GR AFV+F N E+ + A+
Sbjct: 666 -----IRGLPFDFTKDDIVEFFQGLEMIPNGITISNSSAGRIG--AFVQFVNRENVEKAL 718
Query: 230 AKDRMTLGSRYIELFPSSHEEM-DEALSR 257
K + RYIE+F SS E+ ++AL R
Sbjct: 719 KKHMKKIRQRYIEVFRSSLTEINNQALQR 747
>gi|327282636|ref|XP_003226048.1| PREDICTED: probable RNA-binding protein 19-like isoform 2 [Anolis
carolinensis]
Length = 938
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 18/206 (8%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGY 104
G ++P V+LRG PF+ TE +V EF L V + V H N TG F
Sbjct: 283 GGANEPTTSYTVKLRGAPFNVTEQNVREFLVPLRPVAIRIVRNAHGNK--TGYVFVDFNN 340
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK 164
+V AL+RN + MG RY+E+F +E+ K D P R+ R K DE
Sbjct: 341 EEEVQKALKRNHEYMGGRYIELF---YEEHSKKTKPSSKD-----PARTWQRTKKVDEED 392
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANA 222
+ +G L +R LP+++ ++D+ F + LSE IH ++ +P G AFV +
Sbjct: 393 EDLSDSGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--IHFPIDGLTKKPKGFAFVTYMFP 450
Query: 223 EDSKAAMAK-DRMTLGSRYIELFPSS 247
E + A A+ D R + + PS+
Sbjct: 451 EHAVKAFAEVDGQVFQGRMLHVLPST 476
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G + + ++LRG PF+ + ++ +F L +I I N+ G TG FV+F N
Sbjct: 284 GANEPTTSYTVKLRGAPFNVTEQNVREFL--VPLRPVAIRIVRNAHGNKTGYVFVDFNNE 341
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
E+ + A+ ++ +G RYIELF H + + S+
Sbjct: 342 EEVQKALKRNHEYMGGRYIELFYEEHSKKTKPSSK 376
>gi|71121745|gb|AAH99792.1| Hnrph1 protein [Rattus norvegicus]
Length = 184
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KDR T+G RY+E+F S++ EMD L
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVL 97
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 24/143 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R+ MG RYVEVF+S E + + P+ S D D G
Sbjct: 72 KKDRETMGHRYVEVFKSNNVEMDWVLKHT-------GPN-------SPDTAND-----GF 112
Query: 173 LRLRGLPFSAGKDDIMDFFKDFV 195
+RLRGLPF K++I+ FF +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGIL 135
>gi|327282634|ref|XP_003226047.1| PREDICTED: probable RNA-binding protein 19-like isoform 1 [Anolis
carolinensis]
Length = 945
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 18/206 (8%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGY 104
G ++P V+LRG PF+ TE +V EF L V + V H N TG F
Sbjct: 283 GGANEPTTSYTVKLRGAPFNVTEQNVREFLVPLRPVAIRIVRNAHGNK--TGYVFVDFNN 340
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK 164
+V AL+RN + MG RY+E+F +E+ K D P R+ R K DE
Sbjct: 341 EEEVQKALKRNHEYMGGRYIELF---YEEHSKKTKPSSKD-----PARTWQRTKKVDEED 392
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANA 222
+ +G L +R LP+++ ++D+ F + LSE IH ++ +P G AFV +
Sbjct: 393 EDLSDSGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--IHFPIDGLTKKPKGFAFVTYMFP 450
Query: 223 EDSKAAMAK-DRMTLGSRYIELFPSS 247
E + A A+ D R + + PS+
Sbjct: 451 EHAVKAFAEVDGQVFQGRMLHVLPST 476
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G + + ++LRG PF+ + ++ +F L +I I N+ G TG FV+F N
Sbjct: 284 GANEPTTSYTVKLRGAPFNVTEQNVREFL--VPLRPVAIRIVRNAHGNKTGYVFVDFNNE 341
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
E+ + A+ ++ +G RYIELF H + + S+
Sbjct: 342 EEVQKALKRNHEYMGGRYIELFYEEHSKKTKPSSK 376
>gi|432909266|ref|XP_004078148.1| PREDICTED: RNA-binding protein 12B-like [Oryzias latipes]
Length = 631
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 93/211 (44%), Gaps = 19/211 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
VV L GLPF TE + EFF GL+ + VL + + G+AF AL++N
Sbjct: 133 VVFLNGLPFSVTENQICEFFKGLETNEIVLLKNHRGQNNGKAFVRFVTREDAMEALKKNM 192
Query: 117 QNMGRRYVEVFRSKRQEYYKAIAN-----EVSD--VRGGSP-HRSIPRAKSHDEGKDSAV 168
+ +G RYVEV + E+Y+A V D RG P HR R H + +
Sbjct: 193 EYIGTRYVEVCTTTINEWYRATGRMPMGLNVDDNFERGRMPDHRQ--RISPHTRSRSPMM 250
Query: 169 HTG--------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
+ L L + K+DI F+ L D I + G+ T AFV F
Sbjct: 251 QRHAPASEEEYCVLLDNLSYGMEKEDIKQMFRGVKLDNDQILHLTDPAGKRTRSAFVLFK 310
Query: 221 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ D A++ ++ L +R++ + P S E M
Sbjct: 311 SFHDYNRAISNEKKLLYNRWVNIRPISRENM 341
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 19/216 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GL D+ +FF GL I D VH EAF + A+ R+
Sbjct: 4 VIRLQGLKVTAGSEDIRKFFTGLKIPDG-GVHIIGGDHEEAFIIFASDEDARRAMTRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSI-PRAKSHDEGKDSAVHTGIL 173
+ V + S + E + V + RS+ P+ G+ H +
Sbjct: 63 QIKGSPVTLLLSSKTEMQNVLERTTQIVELDQKKQVGRSVDPKVDRRSSGRTETTHPIYV 122
Query: 174 R------------LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ L GLPFS ++ I +FFK L + I + N G+ G+AFV F
Sbjct: 123 KRDMDTERYFVVFLNGLPFSVTENQICEFFKG--LETNEIVLLKNHRGQNNGKAFVRFVT 180
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
ED+ A+ K+ +G+RY+E+ ++ E A R
Sbjct: 181 REDAMEALKKNMEYIGTRYVEVCTTTINEWYRATGR 216
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 14/193 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN---KFTGEAFCVLGYPLQVDFALQR 114
V L L + + D+ + F G+ + + +H + K T AF + + A+
Sbjct: 262 CVLLDNLSYGMEKEDIKQMFRGVKLDNDQILHLTDPAGKRTRSAFVLFKSFHDYNRAISN 321
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDV---RGGSPHRSIPRAKSHD--EGKDSAVH 169
++ + R+V + R+ + ++ + + ++ P + D E + + V+
Sbjct: 322 EKKLLYNRWVNIRPISRENMLALLQSQNTAIGPPENNQSYQERPPSHPRDPYESEKACVY 381
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF-ANAEDSKAA 228
++ LPF K +IMDFF F +SE + + + G G+A V F + AE +
Sbjct: 382 -----VKNLPFDVRKVEIMDFFHGFNVSESRVSVLQDHKGAGVGQALVLFGSEAEAMEVL 436
Query: 229 MAKDRMTLGSRYI 241
R LGS I
Sbjct: 437 CLNGRRLLGSEVI 449
>gi|410987464|ref|XP_004000021.1| PREDICTED: RNA-binding protein 12B [Felis catus]
Length = 999
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 168 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 227
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDV------RGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + Q++ + N + +V SP R I R +SH +
Sbjct: 228 RSFMGSRFIEVMQGSEQQWIEFGGNAIKEVDIPMRIEEHSPPRGINDRHFRKRSHSKSPR 287
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 288 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 346
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S ++M
Sbjct: 347 LKDYNTALGLHKTVLQYRPVHIDPVSRKQM 376
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 100/248 (40%), Gaps = 55/248 (22%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQ-----VDFAL 112
V+RL GLPF VD+ FF GL I D VH GEAF + + FA
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEVGEAFIIFCXXXXXXXAFIIFAT 62
Query: 113 QRN-RQNMGRR-------YVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRS 153
+ R+ + R VE+F S + E K I + +D G GS
Sbjct: 63 DEDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMKRTDRIGRERPGSGASGAGSLSNF 122
Query: 154 IPRAKSHDEG--------KDSAVHT-----GILR---------------LRGLPFSAGKD 185
+ K +D+ HT G LR LRGLP+ +D
Sbjct: 123 VEALKEEASNSGYGSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNED 182
Query: 186 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245
D+ FF + D + + DGR G+A V+FA+ D+ + R +GSR+IE+
Sbjct: 183 DVRVFFSGLCV--DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQ 240
Query: 246 SSHEEMDE 253
S ++ E
Sbjct: 241 GSEQQWIE 248
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 13/191 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 299 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 358
Query: 117 QNMGRRYVEVFRSKRQEYYKAI-----ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
+ R V + R++ K I VS + H S ++ G+ ++
Sbjct: 359 TVLQYRPVHIDPVSRKQMLKFIECYEKKRPVSIEKERLGHISQKYSQEGYPGQKLCIY-- 416
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMA 230
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA
Sbjct: 417 ---IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERL 473
Query: 231 KDRMTLGSRYI 241
R LG+ +
Sbjct: 474 NRRRFLGTEVL 484
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 925 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 984
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 985 SDR-PVGPRKVKL 996
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP---------TGEAFVEFANA 222
++RL GLPF AG DI FF + + +HI G AF+ FA
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEVGEAFIIFCXXXXXXXAFIIFATD 63
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
ED++ A+++ + +ELF SS EM + + R
Sbjct: 64 EDARRAISRSGGFIKDSSVELFLSSKAEMQKTIEMKR 100
>gi|30794154|ref|NP_083038.1| probable RNA-binding protein 19 [Mus musculus]
gi|73621449|sp|Q8R3C6.1|RBM19_MOUSE RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
gi|19343654|gb|AAH25619.1| RNA binding motif protein 19 [Mus musculus]
gi|21707580|gb|AAH34010.1| RNA binding motif protein 19 [Mus musculus]
gi|148687830|gb|EDL19777.1| RNA binding motif protein 19 [Mus musculus]
Length = 952
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 30/223 (13%)
Query: 40 MYNPPPAYGYVSQP-----PPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HK 90
+ P A G V +P P P V+LRG PF+ TE +V EF L V + V H
Sbjct: 270 VLRPQEAAGKVEKPVSQKEPTTPYTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHG 329
Query: 91 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
N TG F L +V AL+ NR MG RY+EVFR K+ + G P
Sbjct: 330 NK--TGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTAR-----------GPP 376
Query: 151 HRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMN 206
+ P R +E ++ +G L +R L +++ ++D+ F + LSE +H ++
Sbjct: 377 KSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--LHYPID 434
Query: 207 S-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247
S +P G AFV F E + A A+ D R + + PS+
Sbjct: 435 SLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 477
>gi|395512126|ref|XP_003760295.1| PREDICTED: RNA-binding protein 12B [Sarcophilus harrisii]
Length = 745
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 24/212 (11%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNM 119
LRGLP+ TE +V FF GL + V+ + H + G+ LQR+R M
Sbjct: 171 LRGLPYSATEDEVRAFFPGLCVDGVILLKHPTGRNNGDCLVKFATSHDALGGLQRHRHYM 230
Query: 120 GRRYVEVFRSKRQEYYKA-----IANEV---SDVRGGSPHRSIPRAKSHDEGKDSA---- 167
G R+VEV + Q++ I +EV S+ R SP R I A S + +
Sbjct: 231 GSRFVEVSPASEQQWIDCGGSVDIKDEVHFRSEER--SPQRGINDAHSKKRSRSKSPRRV 288
Query: 168 --------VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
+ + L+ L S K DI +FF+D L+ D I + D + TG AFV F
Sbjct: 289 KRRSRSPHKYGFYVHLKNLSLSVEKRDIKNFFRDTDLASDQIKF-LYKDQKRTGSAFVMF 347
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
D +A+A + L R + + P S + M
Sbjct: 348 KTLRDYNSALALHKFILFHRQVLIDPISKKTM 379
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 14/203 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIV--DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + F++K+ K TG AF + + AL ++
Sbjct: 302 VHLKNLSLSVEKRDIKNFFRDTDLASDQIKFLYKDQKRTGSAFVMFKTLRDYNSALALHK 361
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTG-- 171
+ R V + ++ K I R GS R P K++ EG H+G
Sbjct: 362 FILFHRQVLIDPISKKTMLKFIEC-YEKKRSGSVGRERPGHIPEKNYREG-----HSGPK 415
Query: 172 -ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+ +R PF K ++ FF F + ED +++ + G GEA V+F + E + A +
Sbjct: 416 LCIYIRNFPFDVTKVEVQKFFAGFSIDEDDVYLLYDDKGVGLGEALVKFKSEEQAMKAES 475
Query: 231 KDRMTLGSRYIELFPSSHEEMDE 253
+R + L S E+M E
Sbjct: 476 LNRRRFLGTEVLLRLISEEQMQE 498
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L LRGLP+SA +D++ FF + D + + + GR G+ V+FA + D+ + +
Sbjct: 169 LFLRGLPYSATEDEVRAFFPGLCV--DGVILLKHPTGRNNGDCLVKFATSHDALGGLQRH 226
Query: 233 RMTLGSRYIELFPSSHEEM 251
R +GSR++E+ P+S ++
Sbjct: 227 RHYMGSRFVEVSPASEQQW 245
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM++
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + R
Sbjct: 60 SGGFIKDSPVELFLSSKTEMQNTIEMKR 87
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM--A 230
+++ LPF A ++I+DFF + + +S+ I N G P GEA V N +++ AA+
Sbjct: 671 IKIMNLPFKANVNEILDFFHGYGVIPESVSIQYNDQGLPLGEAIVAMVNYDEAMAAINDL 730
Query: 231 KDRMTLGSRYIELF 244
DR +G R ++L
Sbjct: 731 NDR-PVGPRKVKLI 743
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP VD+ FF GL+I D VH GEAF + A+ R+
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDG-GVHIIGGEIGEAFIIFATDEDARRAMSRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI 138
+ VE+F S + E I
Sbjct: 63 FIKDSPVELFLSSKTEMQNTI 83
>gi|358253640|dbj|GAA53549.1| epithelial splicing regulatory protein 1 [Clonorchis sinensis]
Length = 1176
Score = 75.1 bits (183), Expect = 3e-11, Method: Composition-based stats.
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV--DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VV +R +P+ T +A FF GL+++ V + + + A L AL R+
Sbjct: 380 VVEVRQVPWSATPSIIAGFFTGLNLIPGGVAIRLTDGRRSNTAIVAFTSSLNAQLALARH 439
Query: 116 R-QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDE-----GKD---- 165
+ Q G + E + +Q +A + P + S E G D
Sbjct: 440 QHQFCGALFPESPQDTQQGVDRAGTKDKQAQTPTKPSTLQVYSASAREFIQCAGCDQPLV 499
Query: 166 ----SAVHTG---ILRLRGLPFSAGKDDIMDFFK----DFVLSEDSIHITMNSDGRPTGE 214
S + G ++R+RGLPF+A K I+DFFK +L + I++ +GRPTG+
Sbjct: 500 SEFLSQLTNGEQVVVRVRGLPFTATKQQILDFFKAVEAPVLLEANGIYLVAYPEGRPTGD 559
Query: 215 AFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
AFV F++ + + A+ + + LG RY+ELF +S EM
Sbjct: 560 AFVLFSDDKTATRALLRHKDYLGDRYVELFKASPSEM 596
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVL-------FVHKNNKFTGEAFCVLGYPLQVDF 110
VVR+RGLPF T+ + +FF ++ +L + + TG+AF +
Sbjct: 513 VVRVRGLPFTATKQQILDFFKAVEAPVLLEANGIYLVAYPEGRPTGDAFVLFSDDKTATR 572
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDE 162
AL R++ +G RYVE+F++ E + N + G + +P + + +
Sbjct: 573 ALLRHKDYLGDRYVELFKASPSEMVQVCHNVSKQLVGSHSSQKLPGSSADQQ 624
>gi|326437182|gb|EGD82752.1| hypothetical protein PTSG_03403 [Salpingoeca sp. ATCC 50818]
Length = 1027
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
+L+GLPF CTE V EFF L +VD+ F + + + G AF AL+++R
Sbjct: 397 TAKLQGLPFRCTEQQVREFFSPLSVVDIRFLLDRRKRGKGVAFVDFATKRDYKAALKKHR 456
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDE-GKDSAVHTGILRL 175
Q +G R+VEV SK ++ E G + P D+ G D TG + +
Sbjct: 457 QTLGPRFVEVLPSKTRKLPALKPTE------GREAKVYPAPLGEDDKGLD---ETGRIFV 507
Query: 176 RGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNSDG-RPTGEAFVEFANAEDS-KAAMAKD 232
R L + +DDI F+ F LSE +H+ +++ +P G AFV F + E++ KA D
Sbjct: 508 RNLAYVCTEDDIRALFEKFGPLSE--VHMPLDTQTKKPKGIAFVTFLHPENAVKAFTQLD 565
Query: 233 RMTLGSRYIELFPSSHEEMDEAL 255
R + L P+ + D +
Sbjct: 566 ASVFKGRLLHLLPARTRDSDSGI 588
>gi|281427346|ref|NP_001163962.1| RNA binding motif protein 19 [Xenopus (Silurana) tropicalis]
gi|189442184|gb|AAI67335.1| Unknown (protein for MGC:135501) [Xenopus (Silurana) tropicalis]
Length = 542
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 18/211 (8%)
Query: 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN--NKFTGEAFCVLGYPLQV 108
++P V+LRG PF+ TE +V EF L V + NK TG F L +V
Sbjct: 273 NEPTTSYTVKLRGAPFNVTEQNVREFLVPLKPVAIRIARNTYGNK-TGYVFVDLNSEEEV 331
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+RN+ MG RY+EVFR Y K+ + V + R + +E ++
Sbjct: 332 QKALKRNKDYMGGRYIEVFRDN---YTKSPS-----VPQKTQSRPWEQRDKQEELQEDVS 383
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSK 226
+G L +R LP++ +DD+ F + +SE IH ++S +P G AFV F E +
Sbjct: 384 ESGRLFVRNLPYTCNEDDLEKLFSKYGPISE--IHFPIDSLTKKPKGFAFVTFLITEHAV 441
Query: 227 AAMAK-DRMTLGSRYIELFPSS--HEEMDEA 254
A A+ D R + + PS+ +E++E+
Sbjct: 442 KAYAEVDGQIFQGRMLHVLPSAAKKDEVNES 472
>gi|126322103|ref|XP_001368765.1| PREDICTED: RNA-binding protein 12B-like [Monodelphis domestica]
Length = 745
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 93/213 (43%), Gaps = 26/213 (12%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
LRGLP+ TE +V FF GL VD +L H + G+ LQR+R
Sbjct: 171 LRGLPYSATEDEVRAFFPGL-CVDGIILLKHPTGRNNGDCLVKFATSHDALGGLQRHRHY 229
Query: 119 MGRRYVEVFRSKRQEYYKA-----IANEV---SDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
MG R+VEV + Q++ I +EV S+ R SP R I A S + +
Sbjct: 230 MGSRFVEVSPASEQQWIDCGGSADIKDEVHFRSEER--SPQRGINDAHSKKRSRSKSPRR 287
Query: 171 GILR------------LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 218
R L+ L S K DI +FF+D L+ D I + D + TG AFV
Sbjct: 288 MKRRSRSPHKYGFYVHLKNLSLSVEKRDIKNFFRDTDLASDQIKF-LYKDQKRTGSAFVM 346
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
F D +A+A + L R + + P S + M
Sbjct: 347 FKTLRDYNSALALHKFILFHRQVLIDPISKKTM 379
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 14/203 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIV--DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + F++K+ K TG AF + + AL ++
Sbjct: 302 VHLKNLSLSVEKRDIKNFFRDTDLASDQIKFLYKDQKRTGSAFVMFKTLRDYNSALALHK 361
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTG-- 171
+ R V + ++ K I R GS R P K++ EG H+G
Sbjct: 362 FILFHRQVLIDPISKKTMLKFIEC-YEKKRSGSVGRERPGHIPEKTYREG-----HSGPK 415
Query: 172 -ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+ +R PF K ++ FF F + ED +++ + G GEA V+F + E + A +
Sbjct: 416 LCIYIRNFPFDVTKVEVQKFFAGFSIDEDDVYLLYDDKGVGLGEALVKFKSEEQAMKAES 475
Query: 231 KDRMTLGSRYIELFPSSHEEMDE 253
+R + L S E+M E
Sbjct: 476 LNRRRFLGTEVLLRLISEEQMQE 498
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L LRGLP+SA +D++ FF + D I + + GR G+ V+FA + D+ + +
Sbjct: 169 LFLRGLPYSATEDEVRAFFPGLCV--DGIILLKHPTGRNNGDCLVKFATSHDALGGLQRH 226
Query: 233 RMTLGSRYIELFPSSHEEM 251
R +GSR++E+ P+S ++
Sbjct: 227 RHYMGSRFVEVSPASEQQW 245
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM++
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + R
Sbjct: 60 SGGFIKDSPVELFLSSKTEMQNTIEMKR 87
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM--A 230
+++ LPF A ++I+DFF + + +S+ I N G P GEA V N +++ AA+
Sbjct: 671 IKIMNLPFKANVNEILDFFHGYGVIPESVSIQYNEQGLPLGEAIVAMVNYDEAMAAINDL 730
Query: 231 KDRMTLGSRYIELF 244
DR +G R ++L
Sbjct: 731 NDR-PVGPRKVKLI 743
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP VD+ FF GL+I D VH GEAF + A+ R+
Sbjct: 4 VIRLQGLPVIAGPVDIRHFFSGLNIPDG-GVHIIGGEIGEAFIIFATDEDARRAMSRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI 138
+ VE+F S + E I
Sbjct: 63 FIKDSPVELFLSSKTEMQNTI 83
>gi|26343509|dbj|BAC35411.1| unnamed protein product [Mus musculus]
Length = 521
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 102/220 (46%), Gaps = 24/220 (10%)
Query: 40 MYNPPPAYGYVSQP-----PPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HK 90
+ P A G V +P P P V+LRG PF+ TE +V EF L V + V H
Sbjct: 270 VLRPQEAAGKVEKPVSQKEPTTPYTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHG 329
Query: 91 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
N TG F L +V AL+ NR MG RY+EVFR K+ + + +G
Sbjct: 330 NK--TGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQG--- 384
Query: 151 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-D 208
R +E ++ +G L +R L +++ ++D+ F + LSE +H ++S
Sbjct: 385 -----RTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--LHYPIDSLT 437
Query: 209 GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247
+P G AFV F E + A A+ D R + + PS+
Sbjct: 438 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 477
>gi|395818217|ref|XP_003782532.1| PREDICTED: RNA-binding protein 12B isoform 3 [Otolemur garnettii]
Length = 996
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 165 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 224
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDV------RGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + Q++ + N V ++ SP R I R +SH +
Sbjct: 225 RSFMGSRFIEVMQGSEQQWIEFGGNAVKELDVPVRSEEHSPPRGINDRHFRKRSHSKSPR 284
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S K DI +FF D L+ + I + D R T AFV F
Sbjct: 285 RTRSRSPLGFYVHLKNLSLSINKRDIRNFFSDIDLTNEQIRF-LYKDERRTRYAFVMFKT 343
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S ++M
Sbjct: 344 LKDYNTALGLHKTVLQYRPVYIDPVSRKQM 373
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 14 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGKIGEAFIIFATDEDARRAISRSGG 72
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSPHRSIPRAKSHDE-------------- 162
+ VE+F S + E K I + +D G G P S +
Sbjct: 73 FIKDSSVELFLSSKAEMQKTIDVKRTDRVGRGRPGSGASGVGSRSDFIEPVKEEASNSGY 132
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 133 GSSINQDAGFHTNGTGHGELRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 190
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 191 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 245
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF +D+ + + F++K+ + T AF + + AL ++
Sbjct: 296 VHLKNLSLSINKRDIRNFFSDIDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 355
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP--RAKSHDEGKDSAVHTGILR 174
+ R V + R++ K I R GS + P A+ + E S+ I
Sbjct: 356 TVLQYRPVYIDPVSRKQMLKFIEC-YEKKRPGSVEKERPGHVAQKYSEEGHSSQKLCIY- 413
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 233
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA R
Sbjct: 414 IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRR 473
Query: 234 MTLGSRYI 241
LG+ +
Sbjct: 474 RFLGTEVL 481
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 14 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGKIGEAFIIFATDEDARRAISR 69
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
+ +ELF SS EM + +
Sbjct: 70 SGGFIKDSSVELFLSSKAEMQKTI 93
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 922 IKVMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 981
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 982 NDR-PVGPRKVKL 993
>gi|395818213|ref|XP_003782530.1| PREDICTED: RNA-binding protein 12B isoform 1 [Otolemur garnettii]
gi|395818215|ref|XP_003782531.1| PREDICTED: RNA-binding protein 12B isoform 2 [Otolemur garnettii]
Length = 986
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDV------RGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + Q++ + N V ++ SP R I R +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKELDVPVRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S K DI +FF D L+ + I + D R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDIRNFFSDIDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S ++M
Sbjct: 334 LKDYNTALGLHKTVLQYRPVYIDPVSRKQM 363
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGKIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSPHRSIPRAKSHDE-------------- 162
+ VE+F S + E K I + +D G G P S +
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIDVKRTDRVGRGRPGSGASGVGSRSDFIEPVKEEASNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGHGELRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF +D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSLSINKRDIRNFFSDIDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP--RAKSHDEGKDSAVHTGILR 174
+ R V + R++ K I R GS + P A+ + E S+ I
Sbjct: 346 TVLQYRPVYIDPVSRKQMLKFIEC-YEKKRPGSVEKERPGHVAQKYSEEGHSSQKLCIY- 403
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 233
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA R
Sbjct: 404 IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRR 463
Query: 234 MTLGSRYI 241
LG+ +
Sbjct: 464 RFLGTEVL 471
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGKIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
+ +ELF SS EM + +
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTI 83
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 912 IKVMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 971
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 972 NDR-PVGPRKVKL 983
>gi|29747798|gb|AAH50844.1| RNA binding motif protein 12B [Mus musculus]
Length = 836
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+ + H + + G+A + L+ +
Sbjct: 154 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDV-----RGGSPHRSIP----RAKSHDEGK 164
R MG R++EV + Q++ + A E D SP R I R +SH +
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHSPSRRINGRHFRKRSHSKSP 273
Query: 165 DSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ + + + L+ L + K D+ + F+D L+ D I D R T AFV F N
Sbjct: 274 RARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKN 332
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S +EM
Sbjct: 333 QKDYNTALGLHKTVLQYRPVLIDPVSRKEM 362
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 96/234 (41%), Gaps = 41/234 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDG-GVHIIGGKVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI----ANEVSDVRGGSPHRSIPR------AKSHDE----- 162
+ VE+F S + E K I V R GS + A +E
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 163 ----GKDSAVHTG-------------------ILRLRGLPFSAGKDDIMDFFKDFVLSED 199
+D+ HT L LRGLP+ +DD+ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 234
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + + D+ F D+ + + FV+K+ + T AF + + AL ++
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R+E + I R S + P K EG + +
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC-YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKLCI 403
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 404 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLNR 463
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 464 QRFLGIEVLLRLISEEQMQE 483
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 153 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 740 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 799
Query: 211 PTGEAFVEFANAEDSKAAM 229
P GEA V N ++ AA+
Sbjct: 800 PIGEAIVAMTNYNEALAAV 818
>gi|172088112|ref|NP_082502.2| RNA-binding protein 12B-A [Mus musculus]
gi|124020998|sp|Q80YR9.2|R12BA_MOUSE RecName: Full=RNA-binding protein 12B-A; AltName: Full=RNA-binding
motif protein 12B-A
Length = 836
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+ + H + + G+A + L+ +
Sbjct: 154 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDV-----RGGSPHRSIP----RAKSHDEGK 164
R MG R++EV + Q++ + A E D SP R I R +SH +
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHSPSRRINGRHFRKRSHSKSP 273
Query: 165 DSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ + + + L+ L + K D+ + F+D L+ D I D R T AFV F N
Sbjct: 274 RARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKN 332
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S +EM
Sbjct: 333 QKDYNTALGLHKTVLQYRPVLIDPVSRKEM 362
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 96/234 (41%), Gaps = 41/234 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDG-GVHIIGGKVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI----ANEVSDVRGGSPHRSIPR------AKSHDE----- 162
+ VE+F S + E K I V R GS + A +E
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 163 ----GKDSAVHTG-------------------ILRLRGLPFSAGKDDIMDFFKDFVLSED 199
+D+ HT L LRGLP+ +DD+ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 234
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + + D+ F D+ + + FV+K+ + T AF + + AL ++
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R+E + I R S + P K EG + +
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC-YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKLCI 403
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 404 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLNR 463
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 464 QRFLGIEVLLRLISEEQMQE 483
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 153 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 740 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 799
Query: 211 PTGEAFVEFANAEDSKAAM 229
P GEA V N ++ AA+
Sbjct: 800 PIGEAIVAMTNYNEALAAV 818
>gi|187953621|gb|AAI37621.1| C430048L16Rik protein [Mus musculus]
Length = 834
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+ + H + + G+A + L+ +
Sbjct: 154 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDV-----RGGSPHRSIP----RAKSHDEGK 164
R MG R++EV + Q++ + A E D SP R I R +SH +
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHSPSRRINGRHFRKRSHSKSP 273
Query: 165 DSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ + + + L+ L + K D+ + F+D L+ D I D R T AFV F N
Sbjct: 274 RARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKN 332
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S +EM
Sbjct: 333 QKDYNTALGLHKTVLQYRPVLIDPVSRKEM 362
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 96/234 (41%), Gaps = 41/234 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDG-GVHIIGGKVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI----ANEVSDVRGGSPHRSIPR------AKSHDE----- 162
+ VE+F S + E K I V R GS + A +E
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 163 ----GKDSAVHTG-------------------ILRLRGLPFSAGKDDIMDFFKDFVLSED 199
+D+ HT L LRGLP+ +DD+ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 234
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + + D+ F D+ + + FV+K+ + T AF + + AL ++
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R+E + I R S + P K EG + +
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC-YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKLCI 403
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 404 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLNR 463
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 464 QRFLGIEVLLRLISEEQMQE 483
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 171 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ +A
Sbjct: 756 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSA 815
Query: 229 M 229
+
Sbjct: 816 V 816
>gi|213511062|ref|NP_001133976.1| probable RNA-binding protein 19 [Salmo salar]
gi|209156026|gb|ACI34245.1| Probable RNA-binding protein 19 [Salmo salar]
Length = 912
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 16/234 (6%)
Query: 32 GTPPSSSFMYN----PPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF 87
T P+SS + P ++P P V+LRG PF+ E V EF L +
Sbjct: 250 ATAPASSLDQSQGKPSKPGKQQETEPTPEFTVKLRGCPFNVKEQQVREFMTPLKPAAIRI 309
Query: 88 VHK--NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV 145
+ NK TG + + +V+ AL++N+ MG RY+EVFR+ + +A+ E
Sbjct: 310 IKNATGNK-TGYIYVDMRSEEEVEKALKKNKDYMGGRYIEVFRTSVKGEGRAVRRE---- 364
Query: 146 RGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205
GS RS R DE ++ +G L +R LP++ ++++ D F + +
Sbjct: 365 -KGS-ERSFTRELKDDEEEEDVAESGRLFIRNLPYTCTEEELQDLFSKHGPLAEVVFPID 422
Query: 206 NSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS--HEEMDEALS 256
N +P G AFV + E++ A+A+ D R + L PS+ E+ D A S
Sbjct: 423 NLTKKPKGYAFVSYMIPENAVTALAQLDGHIFQGRMLHLLPSTLKKEKADSAHS 476
>gi|148673677|gb|EDL05624.1| mCG123728, isoform CRA_a [Mus musculus]
gi|148673678|gb|EDL05625.1| mCG123728, isoform CRA_a [Mus musculus]
gi|148673679|gb|EDL05626.1| mCG123728, isoform CRA_a [Mus musculus]
Length = 834
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+ + H + + G+A + L+ +
Sbjct: 154 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDV-----RGGSPHRSIP----RAKSHDEGK 164
R MG R++EV + Q++ + A E D SP R I R +SH +
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHSPSRRINGRHFRKRSHSKSP 273
Query: 165 DSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ + + + L+ L + K D+ + F+D L+ D I D R T AFV F N
Sbjct: 274 RARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKN 332
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S +EM
Sbjct: 333 QKDYNTALGLHKTVLQYRPVLIDPVSRKEM 362
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 96/234 (41%), Gaps = 41/234 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDG-GVHIIGGKVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI----ANEVSDVRGGSPHRSIPR------AKSHDE----- 162
+ VE+F S + E K I V R GS + A +E
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 163 ----GKDSAVHTG-------------------ILRLRGLPFSAGKDDIMDFFKDFVLSED 199
+D+ HT L LRGLP+ +DD+ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 234
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + + D+ F D+ + + FV+K+ + T AF + + AL ++
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R+E + I R S + P K EG + +
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC-YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKLCI 403
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 404 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLNR 463
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 464 QRFLGIEVLLRLISEEQMQE 483
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 153 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 738 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 797
Query: 211 PTGEAFVEFANAEDSKAAM 229
P GEA V N ++ AA+
Sbjct: 798 PIGEAIVAMTNYNEALAAV 816
>gi|71067349|ref|NP_945195.1| RNA-binding protein 12B-B [Mus musculus]
gi|341941784|sp|Q66JV4.2|R12BB_MOUSE RecName: Full=RNA-binding protein 12B-B; AltName: Full=RNA-binding
motif protein 12B-B
gi|26348891|dbj|BAC38085.1| unnamed protein product [Mus musculus]
Length = 834
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+ + H + + G+A + L+ +
Sbjct: 154 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDV-----RGGSPHRSIP----RAKSHDEGK 164
R MG R++EV + Q++ + A E D SP R I R +SH +
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHSPSRRINGRHFRKRSHSKSP 273
Query: 165 DSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ + + + L+ L + K D+ + F+D L+ D I D R T AFV F N
Sbjct: 274 RARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKN 332
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S +EM
Sbjct: 333 QKDYNTALGLHKTVLQYRPVLIDPVSRKEM 362
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 96/234 (41%), Gaps = 41/234 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDG-GVHIIGGKVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI----ANEVSDVRGGSPHRSIPR------AKSHDE----- 162
+ VE+F S + E K I V R GS + A +E
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 163 ----GKDSAVHTG-------------------ILRLRGLPFSAGKDDIMDFFKDFVLSED 199
+D+ HT L LRGLP+ +DD+ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 234
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + + D+ F D+ + + FV+K+ + T AF + + AL ++
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R+E + I R S + P K EG + +
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC-YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKLCI 403
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 404 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLNR 463
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 464 QRFLGIEVLLRLISEEQMQE 483
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 171 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ +A
Sbjct: 756 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSA 815
Query: 229 M 229
+
Sbjct: 816 V 816
>gi|12851402|dbj|BAB29027.1| unnamed protein product [Mus musculus]
Length = 723
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 18/211 (8%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
P + LRGLP+ E DV FF GL VD +L H + + G+A + L+
Sbjct: 41 PYLFLRGLPYLVNEDDVRVFFSGL-CVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKC 99
Query: 115 NRQNMGRRYVEVFRSKRQEY--YKAIANEVSDV-----RGGSPHRSIP----RAKSHDEG 163
+R MG R++EV + Q++ + A E D SP R I R +SH +
Sbjct: 100 HRSFMGSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHSPSRRINGRHFRKRSHSKS 159
Query: 164 KDSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
+ + + + L+ L + K D+ + F+D L+ D I D R T AFV F
Sbjct: 160 PRARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFK 218
Query: 221 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
N +D A+ + L R + + P S +EM
Sbjct: 219 NQKDYNTALGLHKTVLQYRPVLIDPVSRKEM 249
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + + D+ F D+ + + FV+K+ + T AF + + AL ++
Sbjct: 172 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 231
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R+E + I R S + P K EG + +
Sbjct: 232 TVLQYRPVLIDPVSRKEMVRIIEC-YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKLCI 290
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 291 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLNR 350
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 351 QRFLGIEVLLRLISEEQMQE 370
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L LRGLP+ +DD+ FF + D + + + DGR G+A V+FA+ D+ +
Sbjct: 43 LFLRGLPYLVNEDDVRVFFSGLCV--DGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 100
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R +GSR+IE+ S ++ E
Sbjct: 101 RSFMGSRFIEVMQGSEQQWIE 121
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 153 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 627 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 686
Query: 211 PTGEAFVEFANAEDSKAAM 229
P GEA V N ++ AA+
Sbjct: 687 PIGEAIVAMTNYNEALAAV 705
>gi|332022470|gb|EGI62777.1| RNA-binding protein 12 [Acromyrmex echinatior]
Length = 883
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 22/190 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ L LP E+D+A+ FH I D LF+ N+K TG + Y V FA + +
Sbjct: 554 CILLTDLPSFTKEMDIAKLFHDWKIND-LFI-TNSKETG----TIQYMAYVQFARLEDAK 607
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
+ +++ +Q AI+ E +AK E + S T + +RG
Sbjct: 608 SSLSTPLKI--GSKQVTATAISEE-----------KFAQAKREHE-QASMNQTDCVLMRG 653
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
LPF DI DFF D + IH+ +N G+P GE F EF +AE ++ A+ K+ + LG
Sbjct: 654 LPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKAERAITKNGLPLG 713
Query: 238 SRY--IELFP 245
IEL P
Sbjct: 714 KNIPTIELVP 723
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+L L +PF A ++I++FF DF + +++ N G PTG+A V F++ +++ A+
Sbjct: 808 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFSSPSEAQRAL 865
>gi|354466972|ref|XP_003495945.1| PREDICTED: probable RNA-binding protein 19 [Cricetulus griseus]
gi|344237019|gb|EGV93122.1| putative RNA-binding protein 19 [Cricetulus griseus]
Length = 954
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 24/217 (11%)
Query: 43 PPPAYGYVSQP-----PPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNK 93
P A G V +P P P V+LRG PF+ TE +V EF L V + V H N
Sbjct: 273 PQEATGKVEKPASKTEPTTPYTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNK- 331
Query: 94 FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 153
TG F L +V AL+ NR+ MG RY+EVFR K + + + +G R+
Sbjct: 332 -TGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREKAPSAHGPPKSSTTPWQG----RT 386
Query: 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRP 211
+ H+E +D A +G L +R L +++ ++D+ F + LSE +H ++S +P
Sbjct: 387 LGE---HEEEEDLA-DSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--LHYPIDSLTKKP 440
Query: 212 TGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247
G AF+ F E + A A+ D R + + PS+
Sbjct: 441 KGFAFITFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 477
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++LRG PF+ + ++ +F L +I I N+ G TG FV+ ++ E+ K A+
Sbjct: 294 TVKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 351
Query: 232 DRMTLGSRYIELF----PSSH 248
+R +G RYIE+F PS+H
Sbjct: 352 NREYMGGRYIEVFREKAPSAH 372
>gi|384253302|gb|EIE26777.1| hypothetical protein COCSUDRAFT_64653 [Coccomyxa subellipsoidea
C-169]
Length = 472
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNSDGRPTGEAFVEFANA-EDSK 226
G ++LRG+PF+ K DI FF +SED + + + DGRPTGEA+VE + A +
Sbjct: 375 QEGWIKLRGIPFTITKPDICSFFSTCGQMSEDKVKLVVGPDGRPTGEAYVEISGAGAKLR 434
Query: 227 AAMAKDRMTL--GSRYIELFPSSHEEMD 252
A+AKDR + SRYIE+F S+ +E+D
Sbjct: 435 LALAKDRQIMPGSSRYIEIFTSTRDEVD 462
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 35 PSSSFMYNP--PPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFV 88
P++ M NP P + P ++LRG+PF T+ D+ FF + L V
Sbjct: 353 PATGGMVNPNMAPVLDPATVPFQEGWIKLRGIPFTITKPDICSFFSTCGQMSEDKVKLVV 412
Query: 89 HKNNKFTGEAFC-VLGYPLQVDFALQRNRQNM--GRRYVEVFRSKRQE 133
+ + TGEA+ + G ++ AL ++RQ M RY+E+F S R E
Sbjct: 413 GPDGRPTGEAYVEISGAGAKLRLALAKDRQIMPGSSRYIEIFTSTRDE 460
>gi|343961567|dbj|BAK62373.1| heterogeneous nuclear ribonucleoprotein H [Pan troglodytes]
Length = 357
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+
Sbjct: 19 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 78
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 79 KHKERIGHRYIEIFKSSRAEV 99
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 198 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 255
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 256 DKANMQHRYVELFLNS 271
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 21 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 80
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 81 KERIGHRYIEIFKSSRAE 98
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 198 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 257
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 258 ANMQHRYVELF 268
>gi|355761375|gb|EHH61795.1| hypothetical protein EGM_19914 [Macaca fascicularis]
Length = 357
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF + + I + ++ GR TGEAFV+FA+ E ++ A+
Sbjct: 19 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALK 78
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 79 KHKERIGHRYIEIFKSSRAEV 99
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 198 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 255
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 256 DKANMQHRYVELFLNS 271
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 21 VRLRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 80
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 81 KERIGHRYIEIFKSSRAE 98
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 198 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 257
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 258 ANMQHRYVELF 268
>gi|307179523|gb|EFN67837.1| RNA-binding protein 12 [Camponotus floridanus]
Length = 873
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 22/190 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ L LP E+D+A+ FH I D+ N K +G Y V FA + +
Sbjct: 544 CILLTELPSFTKEMDIAKLFHDWKINDLFIT--NTKESG----TTQYMAYVQFARLEDAK 597
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
+ +++ +Q AI+ E +AK E + S T + +RG
Sbjct: 598 SSLNTTLKI--GSKQVTATAISEE-----------KFAQAKREHE-QVSLNQTDCILMRG 643
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
LPF DI DFF D + IH+ +N G+P GE F EF +AE ++ A+AK+ + LG
Sbjct: 644 LPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKAERAIAKNGLPLG 703
Query: 238 SRY--IELFP 245
IEL P
Sbjct: 704 KNVPTIELVP 713
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+L L +PF A ++I++FF DF + +++ N G PTG+A V F++ +++ A+
Sbjct: 798 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFSSPSEAQRAL 855
>gi|442746139|gb|JAA65229.1| Putative splicing factor hnrnp-f, partial [Ixodes ricinus]
Length = 206
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 34/185 (18%)
Query: 95 TGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDV--------- 145
TGEAF + A+ ++++ +G RY+E+F+S QE A+ V +
Sbjct: 3 TGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVGMGVPKMMRPLGTARP 62
Query: 146 -------RGGSPHR-SIPRAKSHDEG---KDSAVH-----------TG-ILRLRGLPFSA 182
R G P R + R + G +D TG + +RGLPF A
Sbjct: 63 GPYDRGDRFGGPSRYGMGRGGRNFRGFVEEDGYGDFGGSGGARYSATGHFVHMRGLPFRA 122
Query: 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
+ DI +FF+ ++ ++H+ GRP+GE VEFA E++ AM+KD+ + RYIE
Sbjct: 123 TERDIFEFFQP--MNPMNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKAHMQHRYIE 180
Query: 243 LFPSS 247
LF +S
Sbjct: 181 LFLNS 185
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 210 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
R TGEAFV+FA + ++ AM K + +G RYIE+F SS +E+ A+ G
Sbjct: 1 RSTGEAFVQFATRDIAEKAMGKHKEKIGHRYIEIFKSSLQEIRSAVGMG 49
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+ EFF ++ ++V +++++ + +GE + A+ +++
Sbjct: 113 VHMRGLPFRATERDIFEFFQPMNPMNVHLIYEDSGRPSGECDVEFATHEEAVKAMSKDKA 172
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 173 HMQHRYIELF 182
>gi|379642961|ref|NP_001243849.1| RNA-binding protein 12B [Equus caballus]
Length = 976
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDV----RGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + Q++ + A + SDV SP R I R +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGKAVKESDVPMRTEKHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S ++M
Sbjct: 334 LKDYNTALGLHKTVLQYRPVHIDPVSRKQM 363
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 98/235 (41%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSD----VRGGSPHRSIP---------RAKSHDEGK 164
+ VE+F S + E K I + +D R GS + + ++ + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRIGRERPGSGASGVGSFSDFVEAIKEEASNSGY 122
Query: 165 DSAVHTGI--------------------------LRLRGLPFSAGKDDIMDFFKDFVLSE 198
S ++ G L LRGLP+ +DD+ FF +
Sbjct: 123 GSPINQGAGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 13/191 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAI-----ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
+ R V + R++ K I VS + H S ++ G+ ++
Sbjct: 346 TVLQYRPVHIDPVSRKQMLKFIECYEKKRPVSIEKDRLGHVSQKYSQGGYSGQKLCIY-- 403
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMA 230
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA
Sbjct: 404 ---IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERL 460
Query: 231 KDRMTLGSRYI 241
R LG+ +
Sbjct: 461 NRRRFLGTEVL 471
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 902 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAVAAIKDL 961
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 962 NDR-PVGPRKVKL 973
>gi|354491414|ref|XP_003507850.1| PREDICTED: RNA-binding protein 12B-A-like [Cricetulus griseus]
Length = 850
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 17/211 (8%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 164 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAVVKFASCIDASGGLKCH 223
Query: 116 RQNMGRRYVEVFRSKRQEYYK-----AIANEVSDVRG--GSPHRSIP----RAKSHDEG- 163
R MG R++EV + Q++ + A +V +R SP R + R ++H +
Sbjct: 224 RSFMGSRFIEVMQGSEQQWIEFGGNAAKGGDVPCMRAEEHSPSRGMNDRYFRKRTHSKSP 283
Query: 164 ---KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
+ + L L+ L S K D+ +FFKD L+ + I + D R T AFV F
Sbjct: 284 RRTRSRSPLGFYLHLKNLSLSIDKRDLRNFFKDTDLTNEQIKF-LYKDERRTRYAFVMFK 342
Query: 221 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
N +D A+ + L R + + P S ++M
Sbjct: 343 NLKDYNTALGLHKTVLQYRPVFIDPISRKQM 373
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 90/231 (38%), Gaps = 41/231 (17%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMG 120
L GLPF ++ FF GL I D VH GEAF + A+ R+ +
Sbjct: 17 LLGLPFIAGPGEIPHFFKGLTIPDGG-VHIIGGKVGEAFIIFATDEDARRAISRSGGFIK 75
Query: 121 RRYVEVFRSKRQEYYKAIANEVS----------DVRGGSPHRSIPRAKSHDE-------- 162
VE+F S + E K I + + G S A +E
Sbjct: 76 DSSVELFLSSKAEMQKTIEMKRTARGGRGRLGSGASGASSLYHFIDAMKEEESYSGYGSS 135
Query: 163 -GKDSAVHTG-------------------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 202
+D+ HT L LRGLP+ +DD+ FF + D +
Sbjct: 136 INQDAGFHTNGTGLDIRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--DGVI 193
Query: 203 ITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 194 FLKHHDGRNNGDAVVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 244
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
G+ L GLPF AG +I FFK + + +HI G GEAF+ FA ED++ A+
Sbjct: 12 CGLSSLLGLPFIAGPGEIPHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAI 67
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
++ + +ELF SS EM + + R
Sbjct: 68 SRSGGFIKDSSVELFLSSKAEMQKTIEMKR 97
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 9/189 (4%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
+ L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 296 LHLKNLSLSIDKRDLRNFFKDTDLTNEQIKFLYKDERRTRYAFVMFKNLKDYNTALGLHK 355
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R++ K I R GS + P K +EG +
Sbjct: 356 TVLQYRPVFIDPISRKQMVKFIEC-YEKKRPGSVEKGRPGRVSQKFFEEGYSG--QKLYI 412
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKD 232
+R PF K ++ FF DF L E+ I++ + G GEA V F + E + KA
Sbjct: 413 YIRNFPFDVTKVEVQKFFVDFSLVENDIYLLYDDKGVGLGEALVRFKSEEQAMKAERLNR 472
Query: 233 RMTLGSRYI 241
R LG+ +
Sbjct: 473 RRFLGTEVL 481
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK- 231
+++ LPF A ++I+DFF + + DS+ I N G P GEA + N ++ AA+ +
Sbjct: 776 VKIMNLPFKANANEILDFFHGYKVIPDSVSIQYNEQGLPIGEAIIAMINYNEAIAAIKEL 835
Query: 232 DRMTLGSRYIEL 243
+ +G R ++L
Sbjct: 836 NGRPVGPRKVKL 847
>gi|322790727|gb|EFZ15471.1| hypothetical protein SINV_06272 [Solenopsis invicta]
Length = 933
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 22/190 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ L LP E+D+A+ FH I D+ N+K TG Y V FA + +
Sbjct: 600 CILLTDLPSFTKEMDIAKLFHDWKINDLFIT--NSKETG----TTQYMAYVQFARLEDAK 653
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
+ +++ +Q AI+ E +AK E + S T + +RG
Sbjct: 654 SSLSTPLKI--GSKQVTATAISEE-----------KFAQAKREHE-QASINQTDCILMRG 699
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
LPF DI DFF D + IH+ +N G+P GE F EF +AE ++ A+ K+ + LG
Sbjct: 700 LPFQTIDRDIFDFFSDIGIVPLCIHMMLNQQGKPAGECFCEFDSAEKAERAITKNGLPLG 759
Query: 238 SRY--IELFP 245
IEL P
Sbjct: 760 KNIPTIELVP 769
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 19/107 (17%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT-------------------MNSDGRPT 212
I+RL+ L +SA DI FF+ + E +HI S G T
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIVGGELGDAFIAFSERLLARLATSGGNLT 63
Query: 213 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+F F+ ED++ AM D + I+L SS EM + + R
Sbjct: 64 DMSFCYFSTDEDARQAMMHDGGKIKEMKIKLLLSSRTEMQKVIEAAR 110
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+L L +PF A ++I++FF DF + +++ N G PTG+A V F++ +++ A+
Sbjct: 858 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFSSPSEAQRAL 915
>gi|291388277|ref|XP_002710735.1| PREDICTED: RNA binding motif protein 12-like [Oryctolagus
cuniculus]
Length = 864
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 15/209 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSD------VRGGSPHRSIPR-------AKSHDE 162
R MG R++EV + +++ + N + + SP R I R +KS
Sbjct: 215 RSFMGSRFIEVMQGSEEQWIELGGNTIKEDDVPMRSEEHSPARGIDRHFRKRSHSKSPRR 274
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
+ + + L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 TRSRSPLGFYVHLKNLSLSINKKDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKTL 333
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S ++M
Sbjct: 334 KDYNTALGLHKTVLQYRPVHVDPISRKQM 362
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGDVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAK--SHDEGK 164
+ VE+F S R E K I + +D G GS I K +++ G
Sbjct: 63 YIKDSSVELFLSSRAEMQKTIQMKRTDRVGRGRPGSGASGVGSMSNFIEAIKEDANNSGY 122
Query: 165 DSAVH---------TG-----------------ILRLRGLPFSAGKDDIMDFFKDFVLSE 198
S+++ TG L LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHANGTGHNDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S E+ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEEQWIE 235
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGYIKDSSVELFLSSRAEMQKTIQMKR 87
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 17/193 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 285 VHLKNLSLSINKKDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQE-------YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
+ R V V R++ Y K + R G H S ++ G+ ++
Sbjct: 345 TVLQYRPVHVDPISRKQMLKFIECYEKKRPGLIEKERSG--HVSQKYSQEGYSGQKLCIY 402
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED-SKAA 228
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E +KA
Sbjct: 403 -----IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQATKAE 457
Query: 229 MAKDRMTLGSRYI 241
R LG+ +
Sbjct: 458 RLNRRRFLGTEVL 470
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 790 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAVVAMINYNEAMAAIKDL 849
Query: 231 KDRMTLGSRYIELF 244
DR +G R ++L
Sbjct: 850 NDR-PVGPRKVKLI 862
>gi|159163318|pdb|1WG5|A Chain A, Solution Structure Of The First Rrm Domain In
Heterogeneous Nuclear Ribonucleoprotein H
Length = 104
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RLRGLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+
Sbjct: 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 76 KHKERIGHRYIEIFKSSRAEV 96
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
VRLRGLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++
Sbjct: 18 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 77
Query: 116 RQNMGRRYVEVFRSKRQE 133
++ +G RY+E+F+S R E
Sbjct: 78 KERIGHRYIEIFKSSRAE 95
>gi|76155975|gb|AAX27224.2| SJCHGC06533 protein [Schistosoma japonicum]
Length = 249
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
D + S H+ +R+RGLP+SA K+DI F L +I + N+ RPTGEA V+FA
Sbjct: 69 DHPQSSTGHS--VRMRGLPYSATKEDIDRFLA--PLQPVNIRMRFNAASRPTGEAIVDFA 124
Query: 221 NAEDSKAAMAKDRMTLGSRYIELF 244
+ +++K AM KDR +GSRYIELF
Sbjct: 125 SHDEAKEAMKKDREKIGSRYIELF 148
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VR+RGLP+ T+ D+ F L V++ + + ++ TGEA + A++++R+
Sbjct: 79 VRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRPTGEAIVDFASHDEAKEAMKKDRE 138
Query: 118 NMGRRYVEVF 127
+G RY+E+F
Sbjct: 139 KIGSRYIELF 148
>gi|226487868|emb|CAX75599.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 292
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
D + S H+ +R+RGLP+SA K+DI F L +I + N+ RPTGEA V+FA
Sbjct: 112 DHPQSSTGHS--VRMRGLPYSATKEDIDRFLA--PLQPVNIRMRFNAASRPTGEAIVDFA 167
Query: 221 NAEDSKAAMAKDRMTLGSRYIELF 244
+ +++K AM KDR +GSRYIELF
Sbjct: 168 SHDEAKEAMKKDREKIGSRYIELF 191
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VR+RGLP+ T+ D+ F L V++ + + ++ TGEA + A++++R+
Sbjct: 122 VRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRPTGEAIVDFASHDEAKEAMKKDRE 181
Query: 118 NMGRRYVEVF 127
+G RY+E+F
Sbjct: 182 KIGSRYIELF 191
>gi|442746051|gb|JAA65185.1| Putative splicing factor hnrnp-f, partial [Ixodes ricinus]
Length = 141
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE----DSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+LR+RGLP+S K++I++FF ++ +H+T++ +GRP+GEA++E + +D +
Sbjct: 7 VLRIRGLPWSPTKEEILNFFTSKEVNIKGGISGVHMTLSREGRPSGEAYIELESEQDVEV 66
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ + +G RYIE+F S EMD + R
Sbjct: 67 GLQRHNEHIGHRYIEVFKSKRSEMDWVVKR 96
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 26/153 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV---DVLFVH----KNNKFTGEAFCVLGYPLQVDF 110
V+R+RGLP+ T+ ++ FF ++ + VH + + +GEA+ L V+
Sbjct: 7 VLRIRGLPWSPTKEEILNFFTSKEVNIKGGISGVHMTLSREGRPSGEAYIELESEQDVEV 66
Query: 111 ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
LQR+ +++G RY+EVF+SKR E + R+ +H + +++
Sbjct: 67 GLQRHNEHIGHRYIEVFKSKRSEMDWVVK----------------RSGAHQQ---DSLND 107
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
G +RLRGLPF K++I FF + + I +
Sbjct: 108 GCVRLRGLPFGCSKEEIAQFFSGLEIVPNGITL 140
>gi|226487878|emb|CAX75604.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 292
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 4/84 (4%)
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
D + S H+ +R+RGLP+SA K+DI F L +I + N+ RPTGEA V+FA
Sbjct: 112 DHPQSSTGHS--VRMRGLPYSATKEDIDRFLA--PLQPVNIRMRFNAASRPTGEAIVDFA 167
Query: 221 NAEDSKAAMAKDRMTLGSRYIELF 244
+ +++K AM KDR +GSRYIELF
Sbjct: 168 SHDEAKEAMKKDREKIGSRYIELF 191
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
VR+RGLP+ T+ D+ F L V++ + + ++ TGEA + A++++R+
Sbjct: 122 VRMRGLPYSATKEDIDRFLAPLQPVNIRMRFNAASRPTGEAIVDFASHDEAKEAMKKDRE 181
Query: 118 NMGRRYVEVF 127
+G RY+E+F
Sbjct: 182 KIGSRYIELF 191
>gi|51593298|gb|AAH80741.1| C430048L16Rik protein [Mus musculus]
Length = 834
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ + DV FF GL + V+ + H + + G+A + L+ +
Sbjct: 154 PYLFLRGLPYLVNDDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDV-----RGGSPHRSIP----RAKSHDEGK 164
R MG R++EV + Q++ + A E D SP R I R +SH +
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIEFGGTATEGGDTPRMRSEEHSPSRRINGRHFRKRSHSKSP 273
Query: 165 DSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ + + + L+ L + K D+ + F+D L+ D I D R T AFV F N
Sbjct: 274 RARSRSPLGFYVHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYK-DERRTRYAFVMFKN 332
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S +EM
Sbjct: 333 QKDYNTALGLHKTVLQYRPVLIDPVSRKEM 362
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 95/234 (40%), Gaps = 41/234 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDG-GVHIIGGKVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI----ANEVSDVRGGSPHRSIPR------AKSHDE----- 162
+ VE+F S + E K I V R GS + A +E
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIEMKRTARVGRGRPGSGASGVGNVYHFSDALKEEESYSGY 122
Query: 163 ----GKDSAVHTG-------------------ILRLRGLPFSAGKDDIMDFFKDFVLSED 199
+D+ HT L LRGLP+ DD+ FF + D
Sbjct: 123 GSSVNRDAGFHTNGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNDDDVRVFFSGLCV--D 180
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 234
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + + D+ F D+ + + FV+K+ + T AF + + AL ++
Sbjct: 285 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R+E + I R S + P K EG + +
Sbjct: 345 TVLQYRPVLIDPVSRKEMVRIIEC-YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKLCI 403
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 404 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLNR 463
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 464 QRFLGIEVLLRLISEEQMQE 483
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIEMKR 87
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 171 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ +A
Sbjct: 756 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSA 815
Query: 229 M 229
+
Sbjct: 816 V 816
>gi|431914230|gb|ELK15488.1| Putative RNA-binding protein 19 [Pteropus alecto]
Length = 949
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 95/205 (46%), Gaps = 18/205 (8%)
Query: 50 VSQPPPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYP 105
+ + P P V+LRG PF+ TE +V EF L V + V H N TG F
Sbjct: 290 IQKEPSTPHTVKLRGAPFNVTEKNVVEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSSE 347
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD 165
+V AL+ NR MG RY+EVFR K K + G R +E ++
Sbjct: 348 EEVKKALKCNRDYMGGRYIEVFREKNVPTTKGPPKNSTKAWQG-------RTLGENEEEE 400
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAE 223
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AFV F E
Sbjct: 401 DLADSGRLFVRNLPYTSSEEDLEKIFSRYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPE 458
Query: 224 DSKAAMAK-DRMTLGSRYIELFPSS 247
+ A A+ D R + + PS+
Sbjct: 459 HAVKAYAEVDGQVFQGRMLHVLPST 483
>gi|348588498|ref|XP_003480003.1| PREDICTED: RNA-binding protein 12B-like [Cavia porcellus]
Length = 850
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSD------VRGGSPHRSIP----RAKSHDEG-- 163
R MG R++EV + +++ + + + G SP R + R +SH +
Sbjct: 215 RSFMGSRFIEVMQGSERQWIEFGGDAIEKGEIPMRTEGHSPPRGVNDRHFRKRSHSKSPR 274
Query: 164 -KDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
S G + L+ L + K D+ +FF+D L+ + I + R T AFV F
Sbjct: 275 RTRSRSPVGFYVHLKNLSLNVSKRDLRNFFRDIDLTNEQIRFLYKDEKR-TRYAFVTFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D K A+ + L R + + P S ++M
Sbjct: 334 QKDYKTALGFHKTILQHRPVHVDPVSKKQM 363
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 95/235 (40%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGDIGEAFIIFATDEDARRAICRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSD-VRGGSPHRSIP---------RAKSHDE----- 162
+ VE+F S + E K I + +D + G P A DE
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRIERGRPGSGASGVGNLSNYIEAMKEDENNSGY 122
Query: 163 ----GKDSAVHTG--------------------ILRLRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT L LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGLDDLRPRKTRPSKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S + E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSERQWIE 235
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 17/193 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + ++ D+ FF +D+ + + F++K+ K T AF AL ++
Sbjct: 286 VHLKNLSLNVSKRDLRNFFRDIDLTNEQIRFLYKDEKRTRYAFVTFKTQKDYKTALGFHK 345
Query: 117 QNMGRRYVEVFR-SKRQ------EYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
+ R V V SK+Q Y K + R G H S ++ G+ ++
Sbjct: 346 TILQHRPVHVDPVSKKQMLKFIESYEKKRPGSIEKERSG--HVSQKYSQEGYSGQKLCIY 403
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED-SKAA 228
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E +KA
Sbjct: 404 -----IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQATKAE 458
Query: 229 MAKDRMTLGSRYI 241
R LG+ +
Sbjct: 459 RLNRRRFLGTEVL 471
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+ +
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDIGEAFIIFATDEDARRAICR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 776 VKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 835
Query: 231 KDRMTLGSRYIELF 244
DR +G R ++L
Sbjct: 836 NDR-PVGPRKVKLI 848
>gi|148233440|ref|NP_001079497.1| uncharacterized protein LOC379184 [Xenopus laevis]
gi|27694912|gb|AAH43858.1| MGC53694 protein [Xenopus laevis]
gi|80477878|gb|AAI08882.1| MGC53694 protein [Xenopus laevis]
Length = 658
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 112/274 (40%), Gaps = 38/274 (13%)
Query: 1 MFYRGKFAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVR 60
M ++ G DG+E R P + G + N YGYV
Sbjct: 115 MVHKSNAEAGFDGKEENVPR-------PKYQGNEGTMPLKEN---GYGYVF--------- 155
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNM 119
L GLP+ E DV EFFHG D+ D+ F V +N G+A+ +L R+++ +
Sbjct: 156 LNGLPYTADEHDVKEFFHGFDVEDINFCVRQNGDKDGKAYVKFATFQDAKASLSRHKEYI 215
Query: 120 GRRYVEVFRSKRQEYYKAIAN------EVSDVRGGSP------HRSIP----RAKSHDEG 163
G RY+ + S + +A++ V + R SP H P R+
Sbjct: 216 GHRYIFLKLSNEHAWIEAVSKTNRREESVHNNREWSPRFSSKNHSRSPGHGSRSPKMHRT 275
Query: 164 KDSAVHTGI--LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ + H L L +P+S K DI +F D + + + ++ G T E FV N
Sbjct: 276 RSRSPHNQQFHLHLLNMPYSVDKKDIKLYFGDPDIPDSQVKFLLDRKGVRTREGFVSVKN 335
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+ + + + L R + ++P + ++M E +
Sbjct: 336 EKFYQKCLGLHKGLLNGREVWVYPIAGKDMSELI 369
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 39/236 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCV---------------- 101
V+RL+GLP D+ FF GL I + VH GEAF +
Sbjct: 4 VIRLQGLPLVAGSTDIRHFFSGLHIPEG-GVHITGGKHGEAFIIFPTDEDARRAMSCSGG 62
Query: 102 ----------LGYPLQVDFALQRNRQ---NMGRR--YVEVFRSKRQEYYKAIANEVSDVR 146
L ++ L+ NR+ ++G ++ ++ Y+ S+
Sbjct: 63 FIKKSQIDLFLSSKAEMQHTLEMNRKGNKDLGATPDISKLLNVMKKGIYQKNMVHKSNAE 122
Query: 147 GG--SPHRSIPRAKSH-DEGKDSAVHTGI--LRLRGLPFSAGKDDIMDFFKDFVLSEDSI 201
G ++PR K +EG G + L GLP++A + D+ +FF F + + I
Sbjct: 123 AGFDGKEENVPRPKYQGNEGTMPLKENGYGYVFLNGLPYTADEHDVKEFFHGFDV--EDI 180
Query: 202 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ + +G G+A+V+FA +D+KA++++ + +G RYI L S+ EA+S+
Sbjct: 181 NFCVRQNGDKDGKAYVKFATFQDAKASLSRHKEYIGHRYIFLKLSNEHAWIEAVSK 236
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + E +HIT G GEAF+ F ED++ AM+
Sbjct: 4 VIRLQGLPLVAGSTDIRHFFSGLHIPEGGVHIT----GGKHGEAFIIFPTDEDARRAMSC 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ I+LF SS EM L R
Sbjct: 60 SGGFIKKSQIDLFLSSKAEMQHTLEMNR 87
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 8/199 (4%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
+ L +P+ + D+ +F DI D + + T E F + L +
Sbjct: 287 LHLLNMPYSVDKKDIKLYFGDPDIPDSQVKFLLDRKGVRTREGFVSVKNEKFYQKCLGLH 346
Query: 116 RQNMGRRYVEVFRSKRQEYYKAI-ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+ + R V V+ ++ + I + E + + S P+ KS +D + +
Sbjct: 347 KGLLNGREVWVYPIAGKDMSELIESTERPQLERNTSEDSSPKRKS----RDRSNLKRCMY 402
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
LR PF+ GK ++ FF F + E I + +S G GEA V F + + A ++
Sbjct: 403 LRNFPFNVGKSEVQKFFAGFPVDERDIFLLYDSRGVGLGEALVIFPSEHHAILAEGLNQQ 462
Query: 235 TLGSRYIELFPSSHEEMDE 253
T + L S E+M E
Sbjct: 463 TFLGTEVLLRRISEEQMKE 481
>gi|75071008|sp|Q5RFT7.1|RB12B_PONAB RecName: Full=RNA-binding protein 12B; AltName: Full=RNA-binding
motif protein 12B
gi|55725003|emb|CAH89370.1| hypothetical protein [Pongo abelii]
Length = 761
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDG-GVHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + +D G GS I K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNIIESVKEEASNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ H+ G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHSNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GSP R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSPERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
>gi|417405465|gb|JAA49443.1| Putative rna-binding protein rrm superfamily [Desmodus rotundus]
Length = 968
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 26/228 (11%)
Query: 32 GTPPSSSFMYNPPPAYGYVSQP-----PPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDV 85
GTP S P A +P P P V+LRG PF+ TE +V EF L +
Sbjct: 268 GTPSGSK---KPQEARAKTEKPAAQREPTTPHTVKLRGAPFNVTEKNVLEFLAPLKPAAI 324
Query: 86 LFV---HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV 142
V H N TG F +V AL+ NR+ MG RY+EVFR + K
Sbjct: 325 RIVRNAHGNK--TGYVFVDFSSEEEVKKALKCNREYMGGRYIEVFREQNVPIAKGTLKTS 382
Query: 143 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSI 201
+ G R +E ++ +G L +R LP+++ ++D+ F F LSE +
Sbjct: 383 AKPWQG-------RTLGENEEEEDLADSGRLFVRNLPYTSTEEDLEQLFSKFGPLSE--L 433
Query: 202 HITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247
H ++S +P G AFV F E + A A+ D R + + PS+
Sbjct: 434 HYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 481
>gi|351700500|gb|EHB03419.1| Heterogeneous nuclear ribonucleoprotein H3 [Heterocephalus glaber]
Length = 260
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G +RL GLPF K++I+ FF+ + + I +TM+ GR TGE FV+FA+ E ++ A+
Sbjct: 16 GTVRLLGLPFGCSKEEIVQFFQWLEIMPNGITMTMDYQGRSTGETFVQFASKEIAENALG 75
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS ++
Sbjct: 76 KHKERIGHRYIEIFRSSRSKI 96
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 21/197 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VRL GLPF C++ ++ +FF L+I+ + + + TGE F + AL +
Sbjct: 17 TVRLLGLPFGCSKEEIVQFFQWLEIMPNGITMTMDYQGRSTGETFVQFASKEIAENALGK 76
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG--GSPHRSIPRAKSHDEGKDSAVHTGI 172
+++ +G RY+E+FRS R S ++G P R + + D +
Sbjct: 77 HKERIGHRYIEIFRSSR-----------SKIKGFYDPPRRLLGQRLGP---YDRPIGGRG 122
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAMA 230
S G D + + D M DGR GEA VEF ED AAM+
Sbjct: 123 GYYGAGRGSYGGFDDYGGYNSYCYGNDGFGDRMRDGRDGRAKGEADVEFVTHEDPVAAMS 182
Query: 231 KDRMTLGSRYIELFPSS 247
KD+ + RYIELF +S
Sbjct: 183 KDKNNMQHRYIELFLNS 199
>gi|113931466|ref|NP_001039182.1| RNA binding motif protein 12B [Xenopus (Silurana) tropicalis]
gi|89271935|emb|CAJ81954.1| novel protein containing five RNA recognition motifs. (a.k.a. RRM,
RBD, or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 641
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 23/256 (8%)
Query: 18 AKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVS--QPPPFPVVRLRGLPFDCTEVDVAE 75
A+ QR +++ S + + S+S N P+Y S + P V + G+P + T+V++
Sbjct: 77 AEMQRALEEINSRFSSVNSAS--GNGTPSYKETSYFRKPDTLYVYVHGMPLNTTKVEIKS 134
Query: 76 FFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY 134
FF GL + D +F+ + + G A A++R+ Q MG V + S E+
Sbjct: 135 FFVGLTVEDAIFLKYPSGLRNGNAIVKFTTSGDAHEAVKRSGQQMGSTPVSLMLSDEAEW 194
Query: 135 YKA---------IANEVS--DVRGGSPH--RSIPRAKSHDEGKDSAVHTGILRLRGLPFS 181
K ++ EVS D + PH + + ++ ++ VH L LP+
Sbjct: 195 IKVGGVRARKRELSPEVSFDDRKKSVPHSRHELIKTRARSPYEERFVH-----LINLPYD 249
Query: 182 AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 241
K DI F + + + I + G+ T E FV+F + + A A+ R SR +
Sbjct: 250 VSKRDIKVHFGNLAMKDSQITFLCDWSGKRTREGFVKFTSINQYRDACAQHRKEFCSRLV 309
Query: 242 ELFPSSHEEMDEALSR 257
++ P S +M + ++R
Sbjct: 310 DVLPISERDMMDLIAR 325
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 10/175 (5%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V L LP+D ++ D+ F L + D + K T E F Q A ++
Sbjct: 241 VHLINLPYDVSKRDIKVHFGNLAMKDSQITFLCDWSGKRTREGFVKFTSINQYRDACAQH 300
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDE--GKDSAVHTGIL 173
R+ R V+V ++ IA R S + P+ S + GK ++
Sbjct: 301 RKEFCSRLVDVLPISERDMMDLIARTGKKPRERSLRKDSPKKCSQESNLGKGKCIY---- 356
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
LR + K DI +FF F L E+ I + +++G GEA V F+ +++++
Sbjct: 357 -LRNFASNVTKPDIQNFFSGFSLKEEDIFLLYDNNGIGLGEALVVFSTEKEAEST 410
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+++L+GL A DI FF + + + I+IT G GEAF+ F++ ED++ A++
Sbjct: 4 VIKLQGLSIEANSIDIRQFFSNLDIPKGYIYIT----GGKYGEAFIIFSSYEDARRAISY 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
L + + L SS EM AL
Sbjct: 60 SGRPLKNSSVHLSISSQAEMQRAL 83
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 9/197 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V++L+GL + +D+ +FF LDI K+ GEAF + A+ + +
Sbjct: 4 VIKLQGLSIEANSIDIRQFFSNLDIPKGYIYITGGKY-GEAFIIFSSYEDARRAISYSGR 62
Query: 118 NMGRRYVEVFRSKRQEYYKA---IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+ V + S + E +A I + S V S + + ++ K ++ +
Sbjct: 63 PLKNSSVHLSISSQAEMQRALEEINSRFSSVNSASGNGTPSYKETSYFRKPDTLY---VY 119
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+ G+P + K +I FF + ED+I + S G G A V+F + D+ A+ +
Sbjct: 120 VHGMPLNTTKVEIKSFFVGLTV-EDAIFLKYPS-GLRNGNAIVKFTTSGDAHEAVKRSGQ 177
Query: 235 TLGSRYIELFPSSHEEM 251
+GS + L S E
Sbjct: 178 QMGSTPVSLMLSDEAEW 194
>gi|417409472|gb|JAA51238.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 300
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 143 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 200
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 201 AVAAMSKDKNNMQHRYIELFLNS 223
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246
I + + + + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F S
Sbjct: 1 ICPWVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRS 60
Query: 247 SHEEM 251
S E+
Sbjct: 61 SRSEI 65
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 151 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 210
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 211 NMQHRYIELF 220
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 73 VAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129
+ + GL+IV L V + TGEAF + AL+++++ +G RY+E+FRS
Sbjct: 1 ICPWVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRS 60
Query: 130 KRQE 133
R E
Sbjct: 61 SRSE 64
>gi|344295376|ref|XP_003419388.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein
19-like [Loxodonta africana]
Length = 1089
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKN--NKFTGEAFCVLGYPLQVDFALQRN 115
V+LRG PF+ TE +V EF L V + V + NK TG F +V AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNSHGNK-TGYIFVDFSSEEEVKKALKCN 353
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175
R+ MG RY+EVFR K K G P + R +E ++ +G L +
Sbjct: 354 REYMGGRYIEVFREKSSPTAKGPLK-----HGAKPWQG--RTLGENEEEEDLADSGRLFV 406
Query: 176 RGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-D 232
R LP+++ ++++ F + LSE +H ++S +P G AF+ F E + A A+ D
Sbjct: 407 RNLPYTSTEEELEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITFMFPEHAVKAYAEVD 464
Query: 233 RMTLGSRYIELFPSS 247
R + + PS+
Sbjct: 465 GQVFQGRMLHVLPST 479
>gi|417409638|gb|JAA51317.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 315
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 158 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 215
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 216 AVAAMSKDKNNMQHRYIELFLNS 238
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246
I + + + + I + ++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F S
Sbjct: 1 ICPWVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRS 60
Query: 247 SHEEM 251
S E+
Sbjct: 61 SRSEI 65
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 166 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 225
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 226 NMQHRYIELF 235
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 73 VAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129
+ + GL+IV L V + TGEAF + AL+++++ +G RY+E+FRS
Sbjct: 1 ICPWVEGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFRS 60
Query: 130 KRQE 133
R E
Sbjct: 61 SRSE 64
>gi|194214277|ref|XP_001492007.2| PREDICTED: probable RNA-binding protein 19 [Equus caballus]
Length = 962
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 111/250 (44%), Gaps = 29/250 (11%)
Query: 7 FAEGADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPF 66
A DG G+ RQ+ I PS PP + P + +P V+LRG PF
Sbjct: 252 IAAQQDGEGPGSGRQQGI---PSRSRKPPEARAETERP---AHQKEPTTPHTVKLRGAPF 305
Query: 67 DCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRY 123
+ TE +V EF L V + V H N TG F +V AL+ NR+ MG RY
Sbjct: 306 NVTEKNVVEFLAPLKPVAIRIVRNAHGNK--TGYVFVDFSSEEEVKKALKCNREYMGGRY 363
Query: 124 VEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPF 180
+EVFR K + G + + P R +E ++ +G L +R LP+
Sbjct: 364 IEVFREKN----------IPTAEGPPKNSAKPWQGRTLGENEEEEDLADSGRLFVRNLPY 413
Query: 181 SAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG 237
++ ++++ F + LSE +H ++ +P G AFV F E + A A+ D
Sbjct: 414 TSTEEELEQLFSRYGPLSE--LHYPIDGLTKKPKGFAFVTFMFPEHAVRAYAEVDGQVFQ 471
Query: 238 SRYIELFPSS 247
R + + PS+
Sbjct: 472 GRMLHVLPST 481
>gi|7739445|gb|AAF68850.1|AF132362_1 hnRNP 2H9B [Homo sapiens]
gi|7739437|gb|AAF68844.1| hnRNP 2H9B [Homo sapiens]
Length = 297
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 140 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 197
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 198 AVAAMSKDKNNMQHRYIELFLNS 220
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 205 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
M+ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 1 MDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFRSSRSEI 47
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 148 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 207
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 208 NMQHRYIELF 217
>gi|281343470|gb|EFB19054.1| hypothetical protein PANDA_014807 [Ailuropoda melanoleuca]
Length = 947
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 23/199 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQR 114
V+LRG PF+ TE V EF L V + V H N TG F +V AL+
Sbjct: 285 TVKLRGAPFNVTEKSVTEFLAPLRPVAIRIVRNAHGNK--TGYIFVDFSSEEEVKQALKC 342
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTG 171
+R+ MG RY+EVFR K V+ +G + + P R +E ++ +G
Sbjct: 343 HREYMGGRYIEVFREKN----------VTTAKGPPKNSAKPWQGRTLGENEEEEDLADSG 392
Query: 172 ILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAM 229
L +R LP+++ ++D+ F F LSE +H ++S +P G AFV F E + A
Sbjct: 393 RLFIRNLPYTSTEEDLEQLFSKFGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVRAY 450
Query: 230 AK-DRMTLGSRYIELFPSS 247
A+ D R + + PS+
Sbjct: 451 AEVDGQVFQGRMLHVLPST 469
>gi|345790896|ref|XP_543410.3| PREDICTED: probable RNA-binding protein 19 [Canis lupus familiaris]
Length = 970
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 19/197 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQR 114
V+LRG PF+ TE +V EF L V + V H N TG F ++ AL+
Sbjct: 298 TVKLRGAPFNVTEKNVLEFLAPLRPVAIRIVRNAHGNK--TGYIFVDFRSEEEIKQALKC 355
Query: 115 NRQNMGRRYVEVFRSKRQEYYKA-IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
NR+ MG RY+E+FR K K + N +G R +E ++ +G L
Sbjct: 356 NREYMGGRYIEIFREKNVPTTKGPLKNSAKPWQG--------RTLGENEEEEDLADSGRL 407
Query: 174 RLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK 231
+R LP+++ ++D+ F F LSE +H ++S +P G AFV F E + A A+
Sbjct: 408 FIRNLPYTSTEEDLQRLFSKFGPLSE--LHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAE 465
Query: 232 -DRMTLGSRYIELFPSS 247
D R + + PS+
Sbjct: 466 VDGQVFQGRMLHVLPST 482
>gi|159163284|pdb|1WEZ|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein H'
Length = 102
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 17 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 74
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 75 DKANMQHRYVELFLNS 90
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 17 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 76
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 77 ANMQHRYVELF 87
>gi|301779826|ref|XP_002925333.1| PREDICTED: probable RNA-binding protein 19-like [Ailuropoda
melanoleuca]
Length = 963
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 23/199 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQR 114
V+LRG PF+ TE V EF L V + V H N TG F +V AL+
Sbjct: 297 TVKLRGAPFNVTEKSVTEFLAPLRPVAIRIVRNAHGNK--TGYIFVDFSSEEEVKQALKC 354
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTG 171
+R+ MG RY+EVFR K V+ +G + + P R +E ++ +G
Sbjct: 355 HREYMGGRYIEVFREKN----------VTTAKGPPKNSAKPWQGRTLGENEEEEDLADSG 404
Query: 172 ILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAM 229
L +R LP+++ ++D+ F F LSE +H ++S +P G AFV F E + A
Sbjct: 405 RLFIRNLPYTSTEEDLEQLFSKFGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVRAY 462
Query: 230 AK-DRMTLGSRYIELFPSS 247
A+ D R + + PS+
Sbjct: 463 AEVDGQVFQGRMLHVLPST 481
>gi|345479719|ref|XP_001600826.2| PREDICTED: epithelial splicing regulatory protein 2-like [Nasonia
vitripennis]
Length = 746
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 12/205 (5%)
Query: 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
P P V + LP E+D+A+ F I D+ K + + + + D L
Sbjct: 390 PTPSSCVLVSDLPSFVKEMDIAKMFQDWKINDLFITSKKENGGMQYYAYVQFARLDDAKL 449
Query: 113 QRNR-QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
+++ Q MG + V V S +E ++ NE H + G A
Sbjct: 450 AQSKPQKMGSKIVMV-SSISEEKFEQAKNE---------HEQLHLGSGGGGGDGGASFDC 499
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+ +RGLP+ DI+D++ D L IH+ +N +G+P GE F EF + E++ A AK
Sbjct: 500 II-MRGLPYQTIDRDILDYYSDIGLVPHRIHMLLNQNGKPAGECFCEFNSCEEAVRATAK 558
Query: 232 DRMTLGSRYIELFPSSHEEMDEALS 256
+ + LG + + +M + L+
Sbjct: 559 NGVPLGKNVPSIELVNRNKMLDTLA 583
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+L L +PF A D+I+DFF DF +S + + N G PTG+A V F + +++ A+ +
Sbjct: 671 VLSLENVPFKADIDEIIDFFGDFQVSREQVIRRYNDKGMPTGDARVAFTSPLEAQRALRE 730
Query: 232 DR 233
R
Sbjct: 731 LR 732
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +R +P SA D+ F+ + D I + ++ G G A+V+F N E + A+
Sbjct: 286 CIEIRNMPMSASYGDVRQAFQGIYIRNDGIKLITDTHGNRVGIAYVKFGNFESKEQALKG 345
Query: 232 DRMTLGS 238
+ GS
Sbjct: 346 TKYVRGS 352
>gi|343470599|emb|CCD16749.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 473
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 38/199 (19%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVHKNNKFTGEAFCVLGYPLQVDFAL- 112
V+RL GLP+ E + +FF ++ D V FV ++ TG F L +
Sbjct: 16 VLRLHGLPYSIEEDKIRDFFSDFNLADEDAIVFFVEGLHRGTG--FIRLRNAGDAPLVIR 73
Query: 113 QRNRQNMGR-RYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171
Q NR+++ RY+E+ S +E +AI + E A+
Sbjct: 74 QLNRRHIDESRYIEISYSSEEELQRAIGQQ--------------------EQSSKAL--- 110
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS---IHITMNSDGRPTGEAFVEFANAEDSKAA 228
+LRLRGLPF + DD+ K F+ S D I + + DGR G+AF+E A+ E
Sbjct: 111 VLRLRGLPFLSTADDV----KAFIESMDGVLRIDMCRDMDGRCAGDAFIELASEEGVARI 166
Query: 229 MAKDRMTLGSRYIELFPSS 247
+ +G+RYIE+ PS+
Sbjct: 167 KTLHKKMMGARYIEVLPST 185
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R+RG PFSA ++ I +FF + +H+ N R TGEAFVE + +D A+ K
Sbjct: 373 VVRIRGAPFSATEEAIAEFFSGVRIPTQGVHMVYNEQNRLTGEAFVEVESKDDVLLALRK 432
Query: 232 DRMTLGSRYIELFPSSHEEM 251
+ +G+RYIE+F SS M
Sbjct: 433 NGGMMGTRYIEVFESSPAAM 452
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDI----V 83
P+ Y P S + P V++PP VVR+RG PF TE +AEFF G+ I V
Sbjct: 345 PTGYSGQPFLSVFHGQSPLV--VARPPSAYVVRIRGAPFSATEEAIAEFFSGVRIPTQGV 402
Query: 84 DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129
+++ ++ N+ TGEAF + V AL++N MG RY+EVF S
Sbjct: 403 HMVY-NEQNRLTGEAFVEVESKDDVLLALRKNGGMMGTRYIEVFES 447
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T +LRL GLP+S +D I DFF DF L+++ I +G G F+ NA D+ +
Sbjct: 14 TTVLRLHGLPYSIEEDKIRDFFSDFNLADEDA-IVFFVEGLHRGTGFIRLRNAGDAPLVI 72
Query: 230 AK--DRMTLGSRYIELFPSSHEEMDEALSR 257
+ R SRYIE+ SS EE+ A+ +
Sbjct: 73 RQLNRRHIDESRYIEISYSSEEELQRAIGQ 102
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 46 AYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK--NNKFTGEAFCVLG 103
A G Q V+RLRGLPF T DV F +D V + + + + + G+AF L
Sbjct: 99 AIGQQEQSSKALVLRLRGLPFLSTADDVKAFIESMDGVLRIDMCRDMDGRCAGDAFIELA 158
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRS 129
V +++ MG RY+EV S
Sbjct: 159 SEEGVARIKTLHKKMMGARYIEVLPS 184
>gi|109476157|ref|XP_001054639.1| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
Length = 843
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDG-GVHVIGGKAGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE--GK 164
+ VE+F S + E K I + S G G+ + I K + G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIDMKRSARVGRGRPGPEASGVGNMYHFIDALKEEERYSGY 122
Query: 165 DSAVH---------TGI----------------LRLRGLPFSAGKDDIMDFFKDFVLSED 199
SAV+ TG+ L LRGLP+ +DD+ FF + D
Sbjct: 123 GSAVNPDAGFHINGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 234
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+ + H + + G+A + L+ +
Sbjct: 154 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDV-----RGGSPHRSI------PRAKSHDE 162
R MG R++EV + Q++ + A++ D SP R + R++S
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIEFGGTASKGGDTLHKRSEEHSPSRRLNDRYFWKRSRSKSP 273
Query: 163 GKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
S G + LR L K D+ F+D LS D I + D R T AFV F N
Sbjct: 274 RTRSRSPLGFYVHLRNLSLHTNKRDLRYLFRDTDLSNDQIKF-LYKDDRRTRYAFVMFKN 332
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S +EM
Sbjct: 333 QKDYNTALGLHKTVLQYRPVLIDPISRKEM 362
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLPF AG DI FFK + + +H+ G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVI----GGKAGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIDMKR 87
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V LR L + D+ F D+ + + F++K+++ T AF + + AL ++
Sbjct: 285 VHLRNLSLHTNKRDLRYLFRDTDLSNDQIKFLYKDDRRTRYAFVMFKNQKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R+E K I R S P K +EG + +
Sbjct: 345 TVLQYRPVLIDPISRKEMVKIIEC-YEKKRPESLEEERPGRVSQKYSEEGFPGSGQKLCI 403
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 404 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLSDDKGIGLGEALVRFKSEEQAMKAERLNR 463
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 464 QRFLGTEVLLRLISEEQMQE 483
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+++ LPF A ++I+DFF + + S+ + N G P GEA V N ++ AA+
Sbjct: 769 VKISNLPFKANSNEILDFFHGYKVIPGSVSLQYNEQGLPIGEAIVAMTNYNEALAAV 825
>gi|194379882|dbj|BAG58293.1| unnamed protein product [Homo sapiens]
Length = 238
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 81 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 138
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 139 AVAAMSKDKNNMQHRYIELFLNS 161
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 89 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 148
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 149 NMQHRYIELF 158
>gi|119574671|gb|EAW54286.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_e
[Homo sapiens]
Length = 177
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 20 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 77
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 78 AVAAMSKDKNNMQHRYIELFLNS 100
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 28 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 87
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 88 NMQHRYIELF 97
>gi|349605437|gb|AEQ00674.1| Heteroproteinous nuclear ribonucleoprotein H3-like protein, partial
[Equus caballus]
Length = 200
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 43 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 100
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 101 AVAAMSKDKNNMQHRYIELFLNS 123
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 51 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 110
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 111 NMQHRYIELF 120
>gi|62648675|ref|XP_232819.3| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
gi|109476143|ref|XP_001053414.1| PREDICTED: RNA-binding protein 12B-A-like [Rattus norvegicus]
Length = 843
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDG-GVHVIGGKAGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE--GK 164
+ VE+F S + E K I + S G G+ + I K + G
Sbjct: 63 FIKDSSVELFLSSKVEMQKTIDMKRSARVGRGRPGPEASGVGNMYHFIDALKEEERYSGY 122
Query: 165 DSAVH---------TGI----------------LRLRGLPFSAGKDDIMDFFKDFVLSED 199
SAV+ TG+ L LRGLP+ +DD+ FF + D
Sbjct: 123 GSAVNPDAGFHINGTGLDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--D 180
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 GVILLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 234
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+ + H + + G+A + L+ +
Sbjct: 154 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVILLKHHDGRNNGDAIVKFASCVDASGGLKCH 213
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDV-----RGGSPHRSI------PRAKSHDE 162
R MG R++EV + Q++ + A++ D SP R + R++S
Sbjct: 214 RSFMGSRFIEVMQGSEQQWIEFGGTASKGGDTLHKRSEEHSPSRRLNDRYFWKRSRSKSP 273
Query: 163 GKDSAVHTGI-LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
S G + LR L K D+ F+D LS D I + D R T AFV F N
Sbjct: 274 RTRSRSPLGFYVHLRNLSLHTNKRDLRYLFRDTDLSNDQIKF-LYKDDRRTRYAFVMFKN 332
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S +EM
Sbjct: 333 QKDYNTALGLHKTVLQYRPVLIDPISRKEM 362
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLPF AG DI FFK + + +H+ G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLQGLPFIAGPVDIRHFFKGLTIPDGGVHVI----GGKAGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKTIDMKR 87
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V LR L + D+ F D+ + + F++K+++ T AF + + AL ++
Sbjct: 285 VHLRNLSLHTNKRDLRYLFRDTDLSNDQIKFLYKDDRRTRYAFVMFKNQKDYNTALGLHK 344
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R+E K I R S P K +EG + +
Sbjct: 345 TVLQYRPVLIDPISRKEMVKIIEC-YEKKRPESLEEERPGRVSQKYSEEGFPGSGQKLCI 403
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 404 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLSDDKGIGLGEALVRFKSEEQAMKAERLNR 463
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 464 QRFLGTEVLLRLISEEQMQE 483
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 171 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ AA
Sbjct: 765 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVAMTNYNEALAA 824
Query: 229 M 229
+
Sbjct: 825 V 825
>gi|355715636|gb|AES05391.1| RNA binding motif protein 19 [Mustela putorius furo]
Length = 823
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 17/196 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQR 114
V+LRG PF+ TE +V EF L V + V H N TG F L +V AL+
Sbjct: 299 TVKLRGAPFNVTEKNVTEFLAPLRPVAIRIVRNAHGNK--TGYIFVDLSSEEEVKQALRC 356
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
+R+ MG RY+EVFR K +A + G R +E ++ +G L
Sbjct: 357 HREYMGGRYIEVFREKNVPTAQAPLKSSARPWQG-------RTLGENEEEEDLADSGRLF 409
Query: 175 LRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK- 231
+R LP+++ ++D+ F F LSE +H ++S +P G AFV F E + A A+
Sbjct: 410 IRNLPYTSTEEDLEQLFSKFGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVRAYAEV 467
Query: 232 DRMTLGSRYIELFPSS 247
D R + + PS+
Sbjct: 468 DGQVFQGRMLHVLPST 483
>gi|5911913|emb|CAB55897.1| hypothetical protein [Homo sapiens]
gi|7739441|gb|AAF68848.1| hnRNP 2H9C [Homo sapiens]
gi|119574666|gb|EAW54281.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574669|gb|EAW54284.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574672|gb|EAW54287.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|119574673|gb|EAW54288.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_b
[Homo sapiens]
gi|193787147|dbj|BAG52353.1| unnamed protein product [Homo sapiens]
Length = 215
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 58 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 115
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 116 AVAAMSKDKNNMQHRYIELFLNS 138
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 66 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 125
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 126 NMQHRYIELF 135
>gi|39644691|gb|AAH04511.2| HNRPH3 protein, partial [Homo sapiens]
Length = 207
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 50 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 107
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 108 AVAAMSKDKNNMQHRYIELFLNS 130
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 58 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 117
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 118 NMQHRYIELF 127
>gi|402910822|ref|XP_003918047.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H2 [Papio
anubis]
Length = 386
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 244 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 301
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 302 DKANMQHRYVELFLNS 317
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G L +GLPF K++I+ FF + + + + ++ GR TGEAFV+FA+ E ++ A+
Sbjct: 65 GYLGFQGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK 124
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + +G RYIE+F SS E+
Sbjct: 125 KHKERIGHRYIEIFKSSRAEV 145
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+GLPF C++ ++ +FF GL+IV L V + TGEAF + AL+++++
Sbjct: 69 FQGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKE 128
Query: 118 NMGRRYVEVFRSKRQE 133
+G RY+E+F+S R E
Sbjct: 129 RIGHRYIEIFKSSRAE 144
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 244 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 303
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 304 ANMQHRYVELF 314
>gi|332238333|ref|XP_003268351.1| PREDICTED: RNA-binding protein 12B isoform 1 [Nomascus leucogenys]
gi|332238335|ref|XP_003268352.1| PREDICTED: RNA-binding protein 12B isoform 2 [Nomascus leucogenys]
gi|332238337|ref|XP_003268353.1| PREDICTED: RNA-binding protein 12B isoform 3 [Nomascus leucogenys]
gi|441647142|ref|XP_004090789.1| PREDICTED: RNA-binding protein 12B [Nomascus leucogenys]
gi|441647145|ref|XP_004090790.1| PREDICTED: RNA-binding protein 12B [Nomascus leucogenys]
Length = 1001
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GSP R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSPERERPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 95/235 (40%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + +D G GS I K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIESVKEEASNSGY 122
Query: 163 ----GKDSAVHTG--------------------ILRLRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT L LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGHGNLKPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAVINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
>gi|296480483|tpg|DAA22598.1| TPA: mCG11326-like [Bos taurus]
Length = 290
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 133 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 190
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
+ AAM+KD+ + RYIELF +S
Sbjct: 191 AVAAMSKDKNNMQHRYIELFLNS 213
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L+ + V + + + + TGEA A+ +++
Sbjct: 141 VHMRGLPFRATENDIANFFSPLNPIRVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKN 200
Query: 118 NMGRRYVEVF 127
NM RY+E+F
Sbjct: 201 NMQHRYIELF 210
>gi|311253626|ref|XP_003125614.1| PREDICTED: RNA-binding protein 12B [Sus scrofa]
Length = 986
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N + D+ + S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAMKEDDIPMRTEEHSQPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S ++M
Sbjct: 334 LKDYNTALGLHKTVLQYRPVHIDPVSRKQM 363
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSPHRSIP------------RAKSHDEG- 163
+ VE+F S + E K I + +D G P P + ++ + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRMGRDRPGSGAPGVGSLSNFVEALKEEASNSGY 122
Query: 164 -----KDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSPINQDAGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 3/186 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+ R V + R++ K I + + + + +R
Sbjct: 346 TVLQYRPVHIDPVSRKQMLKFIECYEKKRPASIEKEKLGHISQKYSQEGYSGQKLCIYIR 405
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMT 235
PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA R
Sbjct: 406 NFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGIGLGEALVKFKSEEQAMKAERLNRRRF 465
Query: 236 LGSRYI 241
LG+ +
Sbjct: 466 LGTEVL 471
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 912 IKIMNLPFKANVNEILDFFHGYRVIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 971
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 972 NDR-PVGPRKVKL 983
>gi|444727895|gb|ELW68371.1| Heterogeneous nuclear ribonucleoprotein H2 [Tupaia chinensis]
Length = 236
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 147 GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206
G S HR S VH +RGLP+ A ++DI +FF +L+ +HI +
Sbjct: 69 GMSDHRHGDGGSSFQSTTGHCVH-----MRGLPYRATENDIYNFF--LLLNPMRVHIEIG 121
Query: 207 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
DGR TGEA VEF ED+ AAMAKD++ + RY+ELF +S
Sbjct: 122 PDGRVTGEADVEFDTHEDAVAAMAKDKVNMQHRYVELFLNS 162
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDF 110
Q V +RGLP+ TE D+ FF L+ + V + + + + TGEA
Sbjct: 83 QSTTGHCVHMRGLPYRATENDIYNFFLLLNPMRVHIEIGPDGRVTGEADVEFDTHEDAVA 142
Query: 111 ALQRNRQNMGRRYVEVF 127
A+ +++ NM RYVE+F
Sbjct: 143 AMAKDKVNMQHRYVELF 159
>gi|431917851|gb|ELK17082.1| RNA-binding protein 12B [Pteropus alecto]
Length = 965
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 195 PYLFLRGLPYLVNENDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 254
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSD------VRGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + Q++ + + + + SP R + R +SH +
Sbjct: 255 RSFMGSRFIEVMQGSEQQWIEFGGSAIKEGDIPLRTEEHSPLRGVNDRHFRKRSHSKSPR 314
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S K D+ +FFKD L+ + I + D R T AFV F
Sbjct: 315 RTRSRSPLGFYVHLKNLSLSINKRDLKNFFKDTDLTNEQIRF-LYKDERRTRYAFVMFKT 373
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S ++M
Sbjct: 374 LKDYNTALGLHKTVLQYRPVLVDPVSRKQM 403
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 99/234 (42%), Gaps = 41/234 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 45 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGDVGEAFIIFATDEDARRAISRSGG 103
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSD----VRGGSPHRSIPRAKSHDEG---------- 163
+ VE+F S + E K I + +D R GS + + EG
Sbjct: 104 FIKDSSVELFLSSKAEMQKTIEMKRTDRIGRERPGSGASGVGCLSNFVEGIKAASNSGYG 163
Query: 164 ----KDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSED 199
+DS HT G LR LRGLP+ ++D+ FF + D
Sbjct: 164 SPINQDSGFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNENDVRVFFSGLCV--D 221
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 222 GVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 275
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 45 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDVGEAFIIFATDEDARRAISR 100
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 101 SGGFIKDSSVELFLSSKAEMQKTIEMKR 128
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 12/190 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 326 VHLKNLSLSINKRDLKNFFKDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 385
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAK-SHDEGKDSAVHTG---I 172
+ R V V R++ K I E + + + SI + + H K S ++G
Sbjct: 386 TVLQYRPVLVDPVSRKQMLKFI--ECYEKKRPA---SIEKERLGHVSQKYSQGYSGQKLC 440
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAK 231
+ +R PF K ++ FF DF L ED I++ + G GEA V+F + E + KA
Sbjct: 441 IYIRNFPFDVTKVEVQKFFADFSLEEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLN 500
Query: 232 DRMTLGSRYI 241
R LG+ +
Sbjct: 501 RRRFLGTEVL 510
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 891 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 950
Query: 231 KDRMTLGSRYIELF 244
DR +G R ++L
Sbjct: 951 NDR-PVGPRKVKLI 963
>gi|351713473|gb|EHB16392.1| RNA-binding protein 12B [Heterocephalus glaber]
Length = 959
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHR----SIPR------------AKS 159
R MG R++EV + Q++ + + V +G P R S PR +KS
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIECGGDAVK--KGEIPMRAEEHSPPRGLNDRHFRKRTHSKS 272
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF 219
+ + + L+ L + K D+ +FF+D L+ + I + R T AFV F
Sbjct: 273 PRRTRSRSPVGFYVHLKNLSLNVSKRDLRNFFRDIDLTNEQIRFLYKDEKR-TRYAFVTF 331
Query: 220 ANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R I + P S ++M
Sbjct: 332 KTLKDYNTALGFHKTVLQHRPIHIDPVSKKQM 363
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 96/237 (40%), Gaps = 44/237 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGDIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + D G GS I A DE
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRIDRIGRGRPGSGASGVGSLSNYI-EAMKEDENNSG 121
Query: 163 -----GKDSAVHTG--------------------ILRLRGLPFSAGKDDIMDFFKDFVLS 197
+D+ HT L LRGLP+ +DD+ FF +
Sbjct: 122 YGSSVNQDAGFHTNGTGLDDLRPRKTRPSKAENPYLFLRGLPYLVNEDDVRVFFSGLCV- 180
Query: 198 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 -DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEQQWIEC 236
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 6/188 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + ++ D+ FF +D+ + + F++K+ K T AF + AL ++
Sbjct: 286 VHLKNLSLNVSKRDLRNFFRDIDLTNEQIRFLYKDEKRTRYAFVTFKTLKDYNTALGFHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS--PHRSIPRAKSHDEGKDSAVHTGILR 174
+ R + + +++ K I GGS RS ++ + + S I
Sbjct: 346 TVLQHRPIHIDPVSKKQMLKFIECYEKKRPGGSIDKERSGHVSQKYSQEGYSGQKLCIY- 404
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDR 233
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 IRNFPFDVTKVEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRR 464
Query: 234 MTLGSRYI 241
LG+ +
Sbjct: 465 RFLGTEVL 472
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGDIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 885 VKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 944
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 945 NDR-PVGPRKVKL 956
>gi|297683295|ref|XP_002819319.1| PREDICTED: RNA-binding protein 12B isoform 2 [Pongo abelii]
gi|297683297|ref|XP_002819320.1| PREDICTED: RNA-binding protein 12B isoform 3 [Pongo abelii]
gi|395739892|ref|XP_003777333.1| PREDICTED: RNA-binding protein 12B [Pongo abelii]
gi|395739895|ref|XP_003777334.1| PREDICTED: RNA-binding protein 12B [Pongo abelii]
Length = 1001
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GSP R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSPERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + +D G GS I K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNIIESVKEEASNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ H+ G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHSNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
>gi|242022416|ref|XP_002431636.1| RNA-binding protein, putative [Pediculus humanus corporis]
gi|212516944|gb|EEB18898.1| RNA-binding protein, putative [Pediculus humanus corporis]
Length = 966
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 17/211 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
+++ LP D E D+ F + + ++ N+ + A+ + AL +
Sbjct: 660 LQVSDLPSDVEEKDINNLFPNMALDKIILEMSNDGKSKVAYVKFQKAVDAKVALGTPNRT 719
Query: 119 MGRR--------------YVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK 164
+G ++ F+ ++EY + + EV + + S GK
Sbjct: 720 IGESPVVLTSLPQYAFNDHLNKFKKTKKEYSEVM--EVDLSKAEEEEEEEEESSSSSIGK 777
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D T +L ++ LP A DI DFF D L + IH+ +++ G+P+G+AF EF++
Sbjct: 778 DVNKSTCVL-MKNLPLEANDRDICDFFSDIGLVPNKIHLMLDTSGQPSGDAFCEFSDLNQ 836
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
++ A K+ LG + + EM EAL
Sbjct: 837 AEKACTKNSAHLGKNIVSVTKVHQSEMMEAL 867
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V ++ LP + + D+ +FF + +V L + + + +G+AFC Q + A +
Sbjct: 784 CVLMKNLPLEANDRDICDFFSDIGLVPNKIHLMLDTSGQPSGDAFCEFSDLNQAEKACTK 843
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
N ++G+ V V + + E +A+ ++ IP + G+ V T
Sbjct: 844 NSAHLGKNIVSVTKVHQSEMMEALGVSKNE------KNKIP-SLMESFGRPQCVVT---- 892
Query: 175 LRGLPFSAGKDDIMDFF-KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
L +PF A DI++FF + L+E I N G+PTG+ V F ED+ A+
Sbjct: 893 LENIPFRAEIFDIINFFGWSYNLTESDIFRRYNDKGQPTGDGKVCFKTPEDALRAI 948
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP+SA DI +F+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLPWSANSLDIRHYFRGLSIPEGGVHIV----GGEMGDAFIAFSTDEDARQAMML 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ I L SS EM + + R
Sbjct: 60 AGGKIKEVQISLMLSSRSEMQKIIEAAR 87
>gi|194389792|dbj|BAG60412.1| unnamed protein product [Homo sapiens]
Length = 355
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 196 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 253
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 254 DKANMQHRYVELFLNS 269
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSK--- 226
++++RGLP+S D++M FF D + + I +GRP+GEAFVE + E+ K
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 227 -AAMAKDRMTLGSRYIELFPSSHEEM 251
A+ K + +G RYIE+F SS E+
Sbjct: 72 EKALKKHKERIGHRYIEIFKSSRAEV 97
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 9/85 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLG----YPLQV 108
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L L +
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQE 133
+ AL+++++ +G RY+E+F+S R E
Sbjct: 72 EKALKKHKERIGHRYIEIFKSSRAE 96
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 196 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 255
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 256 ANMQHRYVELF 266
>gi|348534026|ref|XP_003454504.1| PREDICTED: RNA-binding protein 12B-A-like [Oreochromis niloticus]
Length = 634
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 17/207 (8%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDF--ALQRNRQN 118
L+GLPF TE ++ +FF GL +VD + + KN + + + + D L+R+R+
Sbjct: 142 LKGLPFSVTEKEICDFFGGL-VVDEVVLIKNRQGLNNGTGFVKFATREDAMEGLKRDREY 200
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS---IP---------RAKSHDEGKDS 166
+G RY+E+ + ++++ + + GS R IP R++S +
Sbjct: 201 IGSRYIEISTTTLNDWHRVTGRMPTAIIDGSFQRGRSPIPNQRDPQHRVRSRSPVAQRRI 260
Query: 167 AVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
A G + L L F+ K+DI F + L +D I ++SDG+ A V F + D
Sbjct: 261 APSEGEYCVLLENLSFAVEKEDIKRLFHNAKLGDDQILHLIDSDGKRKRSALVLFKSLRD 320
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEM 251
A+A ++ +R + P S E M
Sbjct: 321 YCEALAHEKRQFFNRLVHTRPVSRENM 347
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 47/233 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD--------------VLFVHKNNK---FTGEAFC 100
V+RL+GL D+ FF GL I D ++F + T
Sbjct: 4 VIRLQGLRVTAGSEDIRRFFTGLKIPDGGVHIIGGERDEAFIIFASDEDARRAMTRSGGV 63
Query: 101 VLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH 160
+ G P+ + + + QNM R ++ ++ + + ++V G P RS+
Sbjct: 64 IRGSPVTLLLSSKAEMQNMLERTTKIVE---RDQKRRLEDDV-----GHPRRSM----EP 111
Query: 161 DEGKDSAVHTG----------------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT 204
+ G+ SA +G L L+GLPFS + +I DFF V+ D + +
Sbjct: 112 EMGRRSASRSGDTPPPLLQRAPNTDDVFLFLKGLPFSVTEKEICDFFGGLVV--DEVVLI 169
Query: 205 MNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
N G G FV+FA ED+ + +DR +GSRYIE+ ++ + R
Sbjct: 170 KNRQGLNNGTGFVKFATREDAMEGLKRDREYIGSRYIEISTTTLNDWHRVTGR 222
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 7/201 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVH---KNNKFTGEAFCVLGYPLQVDFALQR 114
V L L F + D+ FH + D +H + K A + AL
Sbjct: 268 CVLLENLSFAVEKEDIKRLFHNAKLGDDQILHLIDSDGKRKRSALVLFKSLRDYCEALAH 327
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR-GGSPHRSIPRAKSHDEGKDSAVHTGIL 173
++ R V R+ + + + VR G+ R R S+ + +
Sbjct: 328 EKRQFFNRLVHTRPVSRENMIALLKPQGTTVRPSGNSERFQERPASYSSDPYDSEKMCVF 387
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEF-ANAEDSKAAMAKD 232
+R LPF K +I+DFF F ++ED++ + + +G G+A V F + AE +A +
Sbjct: 388 -VRNLPFDVRKVEIIDFFHGFNITEDNVCVLQDREGAGVGQALVVFGSEAEAMRALILDG 446
Query: 233 RMTLGSRYIELFPSSHEEMDE 253
R LGS+ I L + EM E
Sbjct: 447 RRFLGSKVI-LKCITRSEMQE 466
>gi|194673041|ref|XP_881008.3| PREDICTED: RNA-binding protein 12B isoform 4 [Bos taurus]
gi|297482529|ref|XP_002692866.1| PREDICTED: RNA-binding protein 12B [Bos taurus]
gi|296480442|tpg|DAA22557.1| TPA: RNA binding motif protein 12-like [Bos taurus]
Length = 984
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSD------VRGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + +++ N + + +P R I R +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEKQWIDFGGNLIKEGDISMRTEEHTPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RTCSRSPLGFYVHLKNLSVSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S E+M
Sbjct: 334 LKDYNTALGLHKTVLQYRPVYIDPVSREQM 363
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 96/233 (41%), Gaps = 42/233 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAVSRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + +D G GS + K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRMGRERPGSGASGVGSLSNFVEAIKEEGSNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSPINQDAGFHTNGTGHGDLRPRKTRPLTAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEKQW 233
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAVSR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 3/186 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSVSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+ R V + R++ K I + + + + + + +R
Sbjct: 346 TVLQYRPVYIDPVSREQMLKFIECYEKKRPASTEKERLGQVSQKHSQEGYSGQKLCIYIR 405
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMT 235
PF K ++ FF DF L+ED I + + G GEA V+F + E + KA R
Sbjct: 406 NFPFDVTKVEVQKFFADFSLAEDDICLLYDDKGVGLGEALVKFKSEEQAVKAERLNRRRF 465
Query: 236 LGSRYI 241
LG+ +
Sbjct: 466 LGTEVL 471
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 910 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 969
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 970 NDR-PVGPRKVKL 981
>gi|440906243|gb|ELR56528.1| RNA-binding protein 12B [Bos grunniens mutus]
Length = 977
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSD------VRGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + +++ N + + +P R I R +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEKQWIDFGGNLIKEGDISMRTEEHTPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RTCSRSPLGFYVHLKNLSVSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S E+M
Sbjct: 334 LKDYNTALGLHKTVLQYRPVYIDPVSREQM 363
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 96/233 (41%), Gaps = 42/233 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAVSRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + +D G GS + K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRMGRERPGSGASGVGSLSNFVEAIKEEGSNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSPINQDAGFHTNGTGHGDLRPRKTRPLTAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEKQW 233
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAVSR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 3/186 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSVSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+ R V + R++ K I + + + + + + +R
Sbjct: 346 TVLQYRPVYIDPVSREQMLKFIECYEKKRPASTEKERLGQVSQKHSQEGYSGQKLCIYIR 405
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMT 235
PF K ++ FF DF L+ED I + + G GEA V+F + E + KA R
Sbjct: 406 NFPFDVTKVEVQKFFADFSLAEDDICLLYDDKGVGLGEALVKFTSEEQAVKAERLNRRRF 465
Query: 236 LGSRYI 241
LG+ +
Sbjct: 466 LGTEVL 471
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 903 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 962
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 963 NDR-PVGPRKVKL 974
>gi|432106419|gb|ELK32212.1| RNA-binding protein 12B [Myotis davidii]
Length = 954
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G A + L+ +
Sbjct: 155 PYLFLRGLPYVVNEDDVRVFFSGLCVDGVIFLKHDDGRNNGHAMVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSD------VRGGSPHRSIP----RAKSHDEGKD 165
R MG R++EV + Q++ + V++ SP R I R +SH +
Sbjct: 215 RSYMGSRFIEVMQGSEQQWIDFGGSSVTESDIPVRTEEHSPPREINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D +A+ + L R + + P S ++M
Sbjct: 334 LKDYNSALGLHKTVLQYRPVLVDPISRKQM 363
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 94/233 (40%), Gaps = 42/233 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VDV FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDG-GVHIIGGEMGEAFIIFATDEDARRAVSRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYK-----------------------AIANEVSDVRGGSPHRSI 154
+ VE+F S + E K ++N V DV+ + +
Sbjct: 63 FIKDSSVELFLSSKAEMQKILEMKRTDHIGRERPGSGASRVGCLSNFVEDVKEEASNSGY 122
Query: 155 PRAKSHDEG-KDSAVHTGILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+ D G + G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSPMNQDAGFHANGTGHGDLRPRKTRPLKAVNPYLFLRGLPYVVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
D + + DGR G A V+FA+ D+ + R +GSR+IE+ S ++
Sbjct: 181 DGVIFLKHDDGRNNGHAMVKFASCIDASGGLKCHRSYMGSRFIEVMQGSEQQW 233
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG D+ FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDVRHFFTGLTIPDGGVHII----GGEMGEAFIIFATDEDARRAVSR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + L R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKILEMKR 87
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 3/186 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNSALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+ R V V R++ K I + R + + + +R
Sbjct: 346 TVLQYRPVLVDPISRKQMLKFIEYYEKKRPASIEKEKLGRVSQKYSQEGYSGQKLCIYIR 405
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMT 235
PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA R
Sbjct: 406 NFPFDVTKAEVQKFFADFSLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRRF 465
Query: 236 LGSRYI 241
LG+ +
Sbjct: 466 LGTEVL 471
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I G PTGEA V N ++ AA+
Sbjct: 880 IKIMNLPFKANVNEILDFFHGYRIIPDSVRIQYTEQGLPTGEAIVAMINYNEAMAAIKDL 939
Query: 231 KDRMTLGSRYIELF 244
DR +G R + L
Sbjct: 940 NDR-PVGPRKVRLI 952
>gi|112491343|pdb|2HGN|A Chain A, Nmr Structure Of The Third Qrrm Domain Of Human Hnrnp F
gi|297787489|pdb|2KG1|A Chain A, Structure Of The Third Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 139
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 48 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 105
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 106 DRANMQHRYIELFLNS 121
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 39 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 98
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 99 AVAAMSKDRANMQHRYIELF 118
>gi|349605885|gb|AEQ00971.1| Heteroproteinous nuclear ribonucleoprotein H2-like protein, partial
[Equus caballus]
Length = 270
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAMAK
Sbjct: 111 CVHMRGLPYRATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAK 168
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 169 DKANMQHRYVELFLNS 184
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ + V + + + + TGEA A+ +++
Sbjct: 111 CVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDK 170
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 171 ANMQHRYVELF 181
>gi|334321772|ref|XP_001372905.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like
[Monodelphis domestica]
Length = 362
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 99/244 (40%), Gaps = 60/244 (24%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
++ +RGLPF C + + FF GL+ V +L V K TG A + A+++
Sbjct: 42 LLCIRGLPFGCNKETIRHFFSGLETVPSGIILPVDFQGKSTGTALVQFASQEAAEIAIRK 101
Query: 115 NRQNMGRRYVE-------------------VFRSKRQEY--------YKAIANEVSDVRG 147
++ RY+E V + + Y K ++ E SD +G
Sbjct: 102 HKGRPEPRYLENLKNGSVPMPTHWGPFRAFVVKQRLGPYDRQGPELRLKTVSGEGSD-KG 160
Query: 148 GSPH---------------------------RSIPRAKSHDEGKDSAVHTGILRLRGLPF 180
P R IP + D +A + +RGLP+
Sbjct: 161 MRPRVFERLNGSYICKNRSNDDPSIDFNISTRRIPNNRFGDFIFHNATCHHWVHMRGLPY 220
Query: 181 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240
A +DI FF L +HI + DG+ TGEA V+F ED+ AAM K++ + RY
Sbjct: 221 KATVNDIYHFFSP--LCPLRVHIEIGEDGKATGEADVDFVTHEDAVAAMVKEKTYMQHRY 278
Query: 241 IELF 244
IELF
Sbjct: 279 IELF 282
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G+L +RGLPF K+ I FF I + ++ G+ TG A V+FA+ E ++ A+
Sbjct: 41 GLLCIRGLPFGCNKETIRHFFSGLETVPSGIILPVDFQGKSTGTALVQFASQEAAEIAIR 100
Query: 231 KDRMTLGSRYIE 242
K + RY+E
Sbjct: 101 KHKGRPEPRYLE 112
>gi|380806713|gb|AFE75232.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 118
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 26 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 83
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 84 DKANMQHRYVELFLNS 99
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPL 106
G Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA
Sbjct: 16 GSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE 75
Query: 107 QVDFALQRNRQNMGRRYVEVF 127
A+ +++ NM RYVE+F
Sbjct: 76 DAVAAMSKDKANMQHRYVELF 96
>gi|344252227|gb|EGW08331.1| Heterogeneous nuclear ribonucleoprotein F [Cricetulus griseus]
Length = 185
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 60 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 117
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 118 DRANMQHRYIELFLNS 133
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 51 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 110
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 111 AVAAMSKDRANMQHRYIELF 130
>gi|383276062|dbj|BAM09220.1| heterogenous nuclear ribonucleoprotein F, partial [Ursus thibetanus
japonicus]
Length = 150
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 68 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 125
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 126 DRANMQHRYIELFLNS 141
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 59 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 118
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 119 AVAAMSKDRANMQHRYIELF 138
>gi|24646109|ref|NP_731640.1| glorund, isoform C [Drosophila melanogaster]
gi|23171055|gb|AAN13533.1| glorund, isoform C [Drosophila melanogaster]
Length = 179
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDS--IH-ITMNSDGRPTGEAFVEFANAEDSKAAM 229
+RLRGLP+SA +I+DF ++ ++ S IH +T DG+ TGEA+VE A+ ED + A
Sbjct: 51 VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVASQEDVEEAR 110
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
++ ++G RYIE+F ++ +E EA+ +
Sbjct: 111 KLNKASMGHRYIEVFTATPKEAKEAMRK 138
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 31/148 (20%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKFTGEAFCVLG 103
V + P F VRLRGLP+ T ++ +F +++ + ++ + K TGEA+ +
Sbjct: 44 VGESPKF--VRLRGLPWSATHKEILDFLENVNVTNGSAGIHLVTSRVDGKNTGEAYVEVA 101
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG 163
V+ A + N+ +MG RY+EVF + +E +A+ R I G
Sbjct: 102 SQEDVEEARKLNKASMGHRYIEVFTATPKEAKEAM-------------RKIS-------G 141
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFF 191
+A +++LRGLP++ + I +FF
Sbjct: 142 HGTAF---VVKLRGLPYAVTEQQIEEFF 166
>gi|358342654|dbj|GAA27695.2| heterogeneous nuclear ribonucleoprotein F/H [Clonorchis sinensis]
Length = 295
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G LRL GLPFS K I FF+ F + +D I + + GRPTGEAFV+F + E ++ A
Sbjct: 13 GTLRLFGLPFSVTKAQIQAFFEGFEIVKDGIGLLTDHHGRPTGEAFVQFVSPEVARLAAG 72
Query: 231 KDRMTLGSRYIELFPSSHEEMDEALSR 257
K + + RY+E+ S+ + ++A+ R
Sbjct: 73 KHKHLIDGRYVEISFSTLKAANQAIER 99
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+R+RGLPF+A +DI+DFF+ + ++ + + +G+P G A V FA ED+K AM +
Sbjct: 220 IRMRGLPFAATVNDILDFFRP--IQPLTVTMRTHKNGKPNGMADVYFATVEDTKEAMKRH 277
Query: 233 RMTLGSRYIELFPSSHE 249
+ +G RYIELF S E
Sbjct: 278 KAPMGFRYIELFSSVQE 294
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+R+RGLPF T D+ +FF + + V HKN K G A A++R++
Sbjct: 220 IRMRGLPFAATVNDILDFFRPIQPLTVTMRTHKNGKPNGMADVYFATVEDTKEAMKRHKA 279
Query: 118 NMGRRYVEVFRSKRQ 132
MG RY+E+F S ++
Sbjct: 280 PMGFRYIELFSSVQE 294
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQV 108
+P P +RL GLPF T+ + FF G +IV L + + TGEAF P
Sbjct: 8 RPKPDGTLRLFGLPFSVTKAQIQAFFEGFEIVKDGIGLLTDHHGRPTGEAFVQFVSPEVA 67
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV 142
A +++ + RYVE+ S + +AI ++
Sbjct: 68 RLAAGKHKHLIDGRYVEISFSTLKAANQAIERQM 101
>gi|159164103|pdb|2DHA|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Hypothetical Protein Flj201171
Length = 123
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
I+R+RGLPF+A ++++ FF ++ I DGRPTG+AFV FA E ++ A
Sbjct: 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 84
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ K + LG RYIELF S+ E+ + L+R
Sbjct: 85 LRKHKDLLGKRYIELFRSTAAEVQQVLNR 113
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFV-HKNNKFTGEAFCVLGYPLQVDFA 111
+VR+RGLPF T +V FF + +LFV + + + TG+AF + A
Sbjct: 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 84
Query: 112 LQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS 149
L++++ +G+RY+E+FRS E + + N S G S
Sbjct: 85 LRKHKDLLGKRYIELFRSTAAE-VQQVLNRFSSASGPS 121
>gi|18605870|gb|AAH23162.1| Hnrpf protein, partial [Mus musculus]
Length = 188
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+K
Sbjct: 63 CVHMRGLPYKATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 120
Query: 232 DRMTLGSRYIELFPSS 247
DR + RYIELF +S
Sbjct: 121 DRANMQHRYIELFLNS 136
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 49 YVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQ 107
+ Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA +
Sbjct: 54 FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEE 113
Query: 108 VDFALQRNRQNMGRRYVEVF 127
A+ ++R NM RY+E+F
Sbjct: 114 AVAAMSKDRANMQHRYIELF 133
>gi|402580830|gb|EJW74779.1| hypothetical protein WUBG_14313, partial [Wuchereria bancrofti]
Length = 292
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKA 227
T I+RL GLP+ K++I+ FF+ +++ I +T + G+P GEAFV F + E +
Sbjct: 25 ETSIVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFIDDESASK 84
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
A+AK++ + RY++++PSS+ EM AL G
Sbjct: 85 ALAKNKEYIQHRYVDIYPSSYGEMLRALDGG 115
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFT----GEAFCVLGYPLQVDFALQ 113
+VRL GLP+ CT+ ++ FF L+I D V ++++ GEAF AL
Sbjct: 28 IVRLGGLPYGCTKEEIVRFFEPLEIADRGIVMTYDRYSGKPKGEAFVAFIDDESASKALA 87
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEV---SDVRGGSPHRSIPRAKSHDE-GKDSAVH 169
+N++ + RYV+++ S E +A+ + RG R PRA +D G D
Sbjct: 88 KNKEYIQHRYVDIYPSSYGEMLRALDGGIDPYGSSRGWERDRR-PRALPYDRPGVDRGYR 146
Query: 170 TGILRLRGLPFSAGKDDIM 188
+ G+ F + +++
Sbjct: 147 DSRMHRNGICFWKPRWNLV 165
>gi|403295801|ref|XP_003938814.1| PREDICTED: RNA-binding protein 12B [Saimiri boliviensis
boliviensis]
Length = 1001
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V D+ S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDILRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVRFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 99/239 (41%), Gaps = 50/239 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG-------------- 163
+ VE+F S + E K I + +D G R PR+ + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIDMKRTDRVG----RGRPRSGASGVGSLSNFIESVKEEAS 118
Query: 164 ---------KDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDF 194
+D+ HT G LR LRGLP+ +DD+ FF
Sbjct: 119 NSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGL 178
Query: 195 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 179 CV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVRFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GS R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIDMKR 87
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
>gi|380806715|gb|AFE75233.1| heterogeneous nuclear ribonucleoprotein H, partial [Macaca mulatta]
Length = 112
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 26 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 83
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 84 DKANMQHRYVELFLNS 99
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPL 106
G Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA
Sbjct: 16 GSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE 75
Query: 107 QVDFALQRNRQNMGRRYVEVF 127
A+ +++ NM RYVE+F
Sbjct: 76 DAVAAMSKDKANMQHRYVELF 96
>gi|307110461|gb|EFN58697.1| hypothetical protein CHLNCDRAFT_20050, partial [Chlorella
variabilis]
Length = 81
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFK--DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+RLRGLPF++ D++ FF+ + V E + T DGRPTGEA+V +AE A+A
Sbjct: 1 VRLRGLPFTSTAQDVLQFFEGVETVGGEAGVVFTCTPDGRPTGEAYVALPDAEALAGAVA 60
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
+ + +G+RYIE+F SS +M
Sbjct: 61 RHKDKIGTRYIEIFESSKGDM 81
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113
VRLRGLPF T DV +FF G++ V V + + TGEA+ L + A+
Sbjct: 1 VRLRGLPFTSTAQDVLQFFEGVETVGGEAGVVFTCTPDGRPTGEAYVALPDAEALAGAVA 60
Query: 114 RNRQNMGRRYVEVFRSKR 131
R++ +G RY+E+F S +
Sbjct: 61 RHKDKIGTRYIEIFESSK 78
>gi|149412787|ref|XP_001509129.1| PREDICTED: RNA-binding protein 12B-like [Ornithorhynchus anatinus]
Length = 692
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 25/213 (11%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNM 119
L G+P+ TE +V FF GL + V+ + H N + G+ F LQR+R M
Sbjct: 167 LHGMPYSVTEGEVHAFFSGLRVDGVILLKHHNGRNNGDGFVKFATSHDALGGLQRHRHYM 226
Query: 120 GRRYVEVFRSKRQEYYKA-----IANEVSDVRGGSPHRSIPRAKSHDEGKDSAV------ 168
G R+VE+ + +Q++ + + EV +R S RS PR + K +
Sbjct: 227 GPRFVEISPASQQQWVECGGGPDLEMEVGRIR--SKERSPPRGMNDLRLKKRSRSRSPRR 284
Query: 169 ----------HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVE 218
H + L+ L S K DI FF++ L+ + I + D + T AFV
Sbjct: 285 LRTRSRSPRGHGFYVHLKNLSLSTEKKDIKAFFRNIDLTSNQIKF-LYKDQKRTRSAFVM 343
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
F D A+ + L R + + P S + M
Sbjct: 344 FKTPRDYNEALCLHKAVLRQRPVHIDPISKKTM 376
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 95/244 (38%), Gaps = 50/244 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP VD+ FF GL+I D VH GEAF + A+ +
Sbjct: 4 VIRLQGLPVVAGPVDIRHFFSGLNIPDG-GVHIIGGEIGEAFIIFATDEDARRAMSCSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI---------------------------------ANEVSD 144
+ +E+F S + E I +N V
Sbjct: 63 FIKDSLIELFLSSKTEMQNTIEMSRKRFDRGGRDLAGCKRPGAGASGAAGLSSLSNLVEA 122
Query: 145 VRGGSPHRSI--PRAKSHDEGK---DSAVHTGI---------LRLRGLPFSAGKDDIMDF 190
++ G P A H G DS L L G+P+S + ++ F
Sbjct: 123 IKKGMSKAGADHPEAGFHTNGTRHGDSGARKEARTFQSDDRYLFLHGMPYSVTEGEVHAF 182
Query: 191 FKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
F L D + + + +GR G+ FV+FA + D+ + + R +G R++E+ P+S ++
Sbjct: 183 FSG--LRVDGVILLKHHNGRNNGDGFVKFATSHDALGGLQRHRHYMGPRFVEISPASQQQ 240
Query: 251 MDEA 254
E
Sbjct: 241 WVEC 244
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPVDIRHFFSGLNIPDGGVHII----GGEIGEAFIIFATDEDARRAMSC 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ IELF SS EM + R
Sbjct: 60 SGGFIKDSLIELFLSSKTEMQNTIEMSR 87
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 7/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIV--DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF +D+ + F++K+ K T AF + P + AL ++
Sbjct: 299 VHLKNLSLSTEKKDIKAFFRNIDLTSNQIKFLYKDQKRTRSAFVMFKTPRDYNEALCLHK 358
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRA---KSHDEGKDSAVHTGIL 173
+ +R V + ++ K I G + P+A +S+ EG +
Sbjct: 359 AVLRQRPVHIDPISKKTMLKFIDAYEGRGLGAADRERPPQAVPDRSYREGYPGPRLC--I 416
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R PF K ++ FF F + E+ +++ + G GEA V F + + A +R
Sbjct: 417 YIRNFPFDVTKIEVQKFFAGFSVEEEDVYLLYDDKGVGLGEALVRFRSEGQALEAETLNR 476
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S ++M E
Sbjct: 477 KRFLGTEVLLRLISEKQMRE 496
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM--A 230
+++R LPF A ++I+DFF + + +S+ I +N G P+G+A V + +++ AA+
Sbjct: 618 IKIRNLPFKATVNEILDFFHGYRVIPESVSIQLNEQGLPSGDAIVAMTDYDEAVAAVDEL 677
Query: 231 KDRMTLGSRYIELF 244
DR +G R ++L
Sbjct: 678 NDR-PVGPRKVKLI 690
>gi|426235843|ref|XP_004023424.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B-like [Ovis
aries]
Length = 983
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + +++ + + D+ + + PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEKQWIDFGGTLIKEGDISMRTEEHTSPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
A L L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RACSRSPLGFYVHLKNLSVSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S E+M
Sbjct: 334 LKDYNTALGLHKTVLQYRPVYIDPVSREQM 363
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 96/233 (41%), Gaps = 42/233 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAVSRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + +D G GS + K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRMGRERPGSGASGVGSLSNFVEAIKEEGSNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSPINQDAGFHTNGTGHGDLRPRKTRPLTAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCIDASGGLKCHRSFMGSRFIEVMQGSEKQW 233
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAVSR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 3/186 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSVSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+ R V + R++ K I + + + + + + +R
Sbjct: 346 TVLQYRPVYIDPVSREQMLKFIECYEKKRPASTEKERLGQVSQKHSQEGYSGQKLCIYIR 405
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMT 235
PF K ++ FF DF L+ED I + + G GEA V+F + E + KA R
Sbjct: 406 NFPFDVTKVEVQKFFADFSLAEDDICLLYDDKGVGLGEALVKFKSEEQAVKAERLNRRRF 465
Query: 236 LGSRYI 241
LG+ +
Sbjct: 466 LGTEVL 471
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 909 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 968
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 969 NDR-PVGPRKVKL 980
>gi|297299765|ref|XP_002808531.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B-like
[Macaca mulatta]
Length = 1001
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PFLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + +D G GS I K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIESVKEEASNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPFLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GS R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
>gi|296226920|ref|XP_002759119.1| PREDICTED: RNA-binding protein 12B isoform 1 [Callithrix jacchus]
gi|296226922|ref|XP_002759120.1| PREDICTED: RNA-binding protein 12B isoform 2 [Callithrix jacchus]
gi|390475792|ref|XP_003735019.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
gi|390475794|ref|XP_003735020.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
gi|390475796|ref|XP_003735021.1| PREDICTED: RNA-binding protein 12B [Callithrix jacchus]
Length = 1001
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V D+ S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDILRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVRFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 99/239 (41%), Gaps = 50/239 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG-------------- 163
+ VE+F S + E K I + +D G R PR+ + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIDMKRTDRVG----RGRPRSGASGVGSLSHFIESVKEEAS 118
Query: 164 ---------KDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDF 194
+D+ HT G LR LRGLP+ +DD+ FF
Sbjct: 119 NSGYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGL 178
Query: 195 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 179 CV--DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVRFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GS R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I + + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDICLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIDMKR 87
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
>gi|148701751|gb|EDL33698.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_a [Mus
musculus]
Length = 311
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 129 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 186
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 187 DKANMQHRYVELFLNS 202
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 129 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 188
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 189 ANMQHRYVELF 199
>gi|380786971|gb|AFE65361.1| RNA-binding protein 12B [Macaca mulatta]
Length = 1001
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PFLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + +D G GS I K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIESVKEEASNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPFLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GS R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
>gi|402878712|ref|XP_003903017.1| PREDICTED: RNA-binding protein 12B isoform 1 [Papio anubis]
gi|402878714|ref|XP_003903018.1| PREDICTED: RNA-binding protein 12B isoform 2 [Papio anubis]
Length = 1001
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PFLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + +D G GS I K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIESVKEEASNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPFLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GS R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
>gi|397500945|ref|XP_003821163.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 12B [Pan
paniscus]
Length = 1001
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSPHRSIP------------RAKSHDEG- 163
+ VE+F S + E K I + +D G G P + ++ + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGY 122
Query: 164 -----KDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GS R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
>gi|118722349|ref|NP_976324.2| RNA-binding protein 12B [Homo sapiens]
gi|215273872|sp|Q8IXT5.2|RB12B_HUMAN RecName: Full=RNA-binding protein 12B; AltName: Full=RNA-binding
motif protein 12B
Length = 1001
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSPHRSIP------------RAKSHDEG- 163
+ VE+F S + E K I + +D G G P + ++ + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGY 122
Query: 164 -----KDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GS R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
>gi|194389894|dbj|BAG60463.1| unnamed protein product [Homo sapiens]
Length = 159
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 20 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 77
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 78 DKANMQHRYVELFLNS 93
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 48 GYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPL 106
G Q V +RGLP+ TE D+ FF L+ V V + + + + TGEA
Sbjct: 10 GSTFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHE 69
Query: 107 QVDFALQRNRQNMGRRYVEVF 127
A+ +++ NM RYVE+F
Sbjct: 70 DAVAAMSKDKANMQHRYVELF 90
>gi|332830801|ref|XP_003311886.1| PREDICTED: RNA-binding protein 12B isoform 1 [Pan troglodytes]
gi|332830803|ref|XP_003339206.1| PREDICTED: RNA-binding protein 12B [Pan troglodytes]
gi|332830805|ref|XP_003311887.1| PREDICTED: RNA-binding protein 12B isoform 2 [Pan troglodytes]
gi|332830807|ref|XP_003311889.1| PREDICTED: RNA-binding protein 12B isoform 4 [Pan troglodytes]
gi|332830809|ref|XP_003311890.1| PREDICTED: RNA-binding protein 12B isoform 5 [Pan troglodytes]
gi|410041995|ref|XP_003951348.1| PREDICTED: RNA-binding protein 12B [Pan troglodytes]
gi|410222496|gb|JAA08467.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410266932|gb|JAA21432.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410301828|gb|JAA29514.1| RNA binding motif protein 12B [Pan troglodytes]
gi|410338931|gb|JAA38412.1| RNA binding motif protein 12B [Pan troglodytes]
Length = 1001
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSPHRSIP------------RAKSHDEG- 163
+ VE+F S + E K I + +D G G P + ++ + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGY 122
Query: 164 -----KDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GS R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
>gi|148701753|gb|EDL33700.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_c [Mus
musculus]
Length = 288
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 129 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 186
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 187 DKANMQHRYVELFLNS 202
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 129 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 188
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 189 ANMQHRYVELF 199
>gi|355698096|gb|EHH28644.1| RNA-binding motif protein 12B [Macaca mulatta]
gi|355779824|gb|EHH64300.1| RNA-binding motif protein 12B [Macaca fascicularis]
gi|383409041|gb|AFH27734.1| RNA-binding protein 12B [Macaca mulatta]
Length = 1001
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PFLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------GSPHRSIPRAKSHDE---- 162
+ VE+F S + E K I + +D G GS I K
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVGSLSNFIESVKEEASNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPFLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GS R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +G R ++L
Sbjct: 987 NDR-PVGPRKVKL 998
>gi|426360209|ref|XP_004047340.1| PREDICTED: RNA-binding protein 12B isoform 1 [Gorilla gorilla
gorilla]
gi|426360211|ref|XP_004047341.1| PREDICTED: RNA-binding protein 12B isoform 2 [Gorilla gorilla
gorilla]
gi|426360213|ref|XP_004047342.1| PREDICTED: RNA-binding protein 12B isoform 3 [Gorilla gorilla
gorilla]
gi|426360215|ref|XP_004047343.1| PREDICTED: RNA-binding protein 12B isoform 4 [Gorilla gorilla
gorilla]
gi|426360217|ref|XP_004047344.1| PREDICTED: RNA-binding protein 12B isoform 5 [Gorilla gorilla
gorilla]
gi|426360219|ref|XP_004047345.1| PREDICTED: RNA-binding protein 12B isoform 6 [Gorilla gorilla
gorilla]
Length = 1001
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 98/235 (41%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDV----RGGSPHRSIPRAKSHDE----------- 162
+ VE+F S + E K I + +D R GS + + E
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFTESVKEEASNSGY 122
Query: 163 ----GKDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GS R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAVKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIKDL 986
Query: 231 KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 987 NDR-PVGSRKVKL 998
>gi|417409228|gb|JAA51131.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 271
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 112 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 169
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 170 DKANMQHRYVELFLNS 185
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 112 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 171
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 172 ANMQHRYVELF 182
>gi|67971142|dbj|BAE01913.1| unnamed protein product [Macaca fascicularis]
Length = 286
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 127 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 184
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 185 DKANMQHRYVELFLNS 200
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 127 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 186
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 187 ANMQHRYVELF 197
>gi|119612105|gb|EAW91699.1| RNA binding motif protein 12B [Homo sapiens]
Length = 707
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 16/216 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS--DVRGGSPHRSIPRA--------KSHDEGKD 165
R MG R++EV + Q++ + N V DV S S PR +SH +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFRKRSHSKSPR 274
Query: 166 SAVHTGIL----RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
L L+ L S + D+ +FF+ L+++ I + R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENR-TRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D A++ + L R + + P S ++M + ++R
Sbjct: 334 LKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIAR 369
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 100/235 (42%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG-GSPHRSIP------------RAKSHDEG- 163
+ VE+F S + E K I + +D G G P + ++ + G
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGY 122
Query: 164 -----KDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L E D+ FF G D+ D + F++K+ T AF + + AL ++
Sbjct: 286 VHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTRYAFVMFKTLKDYNTALSLHK 345
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD-SAVHTGILRL 175
+ R V + R++ K IA R GS R P S ++ ++ + +
Sbjct: 346 TVLQYRPVHIDPISRKQMLKFIAR-YEKKRSGSLERDRPGHVSQKYSQEGNSGQKLCIYI 404
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRM 234
R PF K ++ FF DF+L+ED I++ + G GEA V+F + E + KA R
Sbjct: 405 RNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKSEEQAMKAERLNRRR 464
Query: 235 TLGSRYI 241
LG+ +
Sbjct: 465 FLGTEVL 471
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
>gi|51476543|emb|CAH18256.1| hypothetical protein [Homo sapiens]
Length = 194
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 112 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 169
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 170 DKANMQHRYVELFLNS 185
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 112 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 171
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 172 ANMQHRYVELF 182
>gi|417409033|gb|JAA51043.1| Putative splicing factor hnrnp-f, partial [Desmodus rotundus]
Length = 251
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 112 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 169
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 170 DKANMQHRYVELFLNS 185
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 112 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 171
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 172 ANMQHRYVELF 182
>gi|365812823|pdb|2LMI|A Chain A, Nmr Structure Of The Protein Bc040485 From Homo Sapiens
Length = 107
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL--SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++R +GLP+S +D+++FF D + E+ IH +N DG+ G+A +E + +D + A+
Sbjct: 13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 72
Query: 230 AKDRMTLGSRYIELFPSSHEEMD 252
K RM +G RY+E++ ++E++D
Sbjct: 73 EKHRMYMGQRYVEVYEINNEDVD 95
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
++R +GLP+ CT DV FF I + ++++ K G+A + V AL
Sbjct: 13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKAL 72
Query: 113 QRNRQNMGRRYVEVF 127
+++R MG+RYVEV+
Sbjct: 73 EKHRMYMGQRYVEVY 87
>gi|74222440|dbj|BAE38120.1| unnamed protein product [Mus musculus]
Length = 272
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +RGLP+ A ++DI +FF L+ +HI + DGR TGEA VEFA ED+ AAM+K
Sbjct: 113 CVHMRGLPYRATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSK 170
Query: 232 DRMTLGSRYIELFPSS 247
D+ + RY+ELF +S
Sbjct: 171 DKANMQHRYVELFLNS 186
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V +RGLP+ TE D+ FF L+ V V + + + + TGEA A+ +++
Sbjct: 113 CVHMRGLPYRATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDK 172
Query: 117 QNMGRRYVEVF 127
NM RYVE+F
Sbjct: 173 ANMQHRYVELF 183
>gi|432094975|gb|ELK26383.1| Putative RNA-binding protein 19 [Myotis davidii]
Length = 966
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 97/205 (47%), Gaps = 18/205 (8%)
Query: 50 VSQPPPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYP 105
V P P V+LRG PF+ TE +V EF L V + V H N TG F
Sbjct: 292 VQWEPSTPHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNK--TGYVFVDFSSE 349
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKD 165
+V AL+ NR+ MG RY+EVFR K K S G R++ + ++ D
Sbjct: 350 EEVKKALKCNREYMGGRYIEVFREKTVPVAKGPPKSSSKPWQG---RTLGEDEEEEDLAD 406
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAE 223
S G L +R LP+++ ++D+ F + LSE +H ++S +P G AFV F E
Sbjct: 407 S----GRLFVRNLPYTSTEEDLEKIFSKYGPLSE--LHYPIDSLTKKPKGFAFVSFMFPE 460
Query: 224 DSKAAMAK-DRMTLGSRYIELFPSS 247
+ A A+ D R + + PS+
Sbjct: 461 HAVKAYAEVDGQVFQGRMLHVLPST 485
>gi|417405481|gb|JAA49451.1| Putative conserved secreted protein precursor [Desmodus rotundus]
Length = 976
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 99/235 (42%), Gaps = 42/235 (17%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF D+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPADIRHFFTGLTIPDGG-VHIIGGEIGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRG----GSPHRSIPRAKSHDEG---------- 163
+ VE+F S + E K I + +D +G GS + + EG
Sbjct: 63 FIKDSSVELFLSSKAEMQKTIEMKRTDHKGRERPGSGASGVGCLSNFVEGIKEEASNSGY 122
Query: 164 -----KDSAVHT-----GILR---------------LRGLPFSAGKDDIMDFFKDFVLSE 198
+D+ HT G LR LRGLP+ +DD+ FF +
Sbjct: 123 GSPINQDAEFHTNGTGHGDLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV-- 180
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
D + + DGR G+A V+FA+ D+ + R +GSR+IE+ S ++ E
Sbjct: 181 DGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIE 235
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRN 115
P + LRGLP+ E DV FF GL + V+F+ H + + G+A + L+ +
Sbjct: 155 PYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCVDASGGLKCH 214
Query: 116 RQNMGRRYVEVFRSKRQEY--YKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-- 171
R MG R++EV + Q++ + ++ D+ + S PR + + +
Sbjct: 215 RSFMGSRFIEVMQGSEQQWIEFGGSTSKEGDIPMRTEEHSPPRGINDRHFRKRSHSRSPR 274
Query: 172 ----------ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN 221
+ L+ L S K D+ +FF+D L+ + I + D R T AFV F
Sbjct: 275 RTRSRSPLGFYVHLKNLSLSINKRDLRNFFRDTDLTNEQIRF-LYKDERRTRYAFVMFKT 333
Query: 222 AEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+D A+ + L R + + P S ++M
Sbjct: 334 LKDYNTALGLHKTVLQYRPVLVDPISRKQM 363
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FF + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPADIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +ELF SS EM + + R
Sbjct: 60 SGGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 17/193 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + D+ FF D+ + + F++K+ + T AF + + AL ++
Sbjct: 286 VHLKNLSLSINKRDLRNFFRDTDLTNEQIRFLYKDERRTRYAFVMFKTLKDYNTALGLHK 345
Query: 117 QNMGRRYVEVFRSKRQE-------YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
+ R V V R++ Y K V R G H S ++ G+ ++
Sbjct: 346 TVLQYRPVLVDPISRKQMLKFIECYEKKRPASVEKERLG--HVSQKYSQEGYSGQKLCIY 403
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+R PF K ++ FF DF L+ED I++ + G GEA V+F + E + KA
Sbjct: 404 -----MRNFPFDVTKVEVQKFFADFSLNEDDIYLLYDDKGVGLGEALVKFTSEEQAMKAE 458
Query: 229 MAKDRMTLGSRYI 241
R LG+ +
Sbjct: 459 RLNRRRFLGTEVL 471
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-- 230
+++ LPF A ++I+DFF + + DS+ I N G PTGEA V N ++ AA+
Sbjct: 902 IKIMNLPFKANVNEILDFFHGYRIIPDSVRIQYNEQGLPTGEAIVAMVNYNEAMAAIKDL 961
Query: 231 KDRMTLGSRYIELF 244
DR +G R + L
Sbjct: 962 NDR-PVGPRKVRLI 974
>gi|410923148|ref|XP_003975044.1| PREDICTED: probable RNA-binding protein 19-like [Takifugu rubripes]
Length = 941
Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 14/201 (6%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN--KFTGEAFCVLGYPLQVD 109
+P V+LRG+PF+ E+ + EF L + + KN+ TG + L QV+
Sbjct: 299 EPATAFTVKLRGVPFNVKELQIREFMTPLKPAAIR-IGKNDSGNRTGYVYVDLHSAEQVE 357
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
AL++N+ +G RY+EVFR E K D R R+ R DE ++
Sbjct: 358 AALKKNKDYIGGRYIEVFRVDNSEKAK------RDKRDREVDRNFTRTLKEDEEEEDVAE 411
Query: 170 TGILRLRGLPFSAGKDDIMDFF-KDFVLSEDSIHITMNSDGRPT-GEAFVEFANAEDSKA 227
+G L +R LP++ ++++ + F K LSE +H ++S + T G AF+ + E++ A
Sbjct: 412 SGRLFVRNLPYTCTEEELKELFAKHGPLSE--LHFPIDSLTKKTKGFAFITYMIPENAVA 469
Query: 228 AMAK-DRMTLGSRYIELFPSS 247
A+A+ D R + L PS+
Sbjct: 470 ALAQLDGHVFQGRMLHLLPST 490
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
++LRG+PF+ + I +F L +I I N G TG +V+ +AE +AA+ K+
Sbjct: 306 VKLRGVPFNVKELQIREFMTP--LKPAAIRIGKNDSGNRTGYVYVDLHSAEQVEAALKKN 363
Query: 233 RMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +G RYIE+F + E + R R
Sbjct: 364 KDYIGGRYIEVFRVDNSEKAKRDKRDR 390
>gi|440906208|gb|ELR56498.1| Putative RNA-binding protein 19 [Bos grunniens mutus]
Length = 947
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 17/196 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQR 114
V+LRG PF+ TE +V EF L + V H N TG F +V AL+
Sbjct: 298 TVKLRGAPFNVTEKNVMEFLAPLKPAAIRVVRNAHGNK--TGYVFVDFSSEEEVRKALKC 355
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
NR+ MG RY+EVFR + KA G P + + H+E +D A +G L
Sbjct: 356 NREYMGGRYIEVFRERNVPAAKAPLK-----NGAKPWQGWTLGE-HEEEEDLA-DSGRLF 408
Query: 175 LRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK- 231
+R LP+++ ++D+ F + +SE +H ++S +P G AFV F E + A A+
Sbjct: 409 VRNLPYTSSEEDLEKLFSRYGPVSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 466
Query: 232 DRMTLGSRYIELFPSS 247
D R + + PS+
Sbjct: 467 DGQVFQGRMLHVLPST 482
>gi|390468249|ref|XP_002753088.2| PREDICTED: probable RNA-binding protein 19 [Callithrix jacchus]
Length = 1066
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 395 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 452
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + + G R +E ++
Sbjct: 453 KKALKCNREYMGGRYIEVFREKNVTTTKGLPKNSAKSWQG-------RMLGENEEEEDLA 505
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AFV F E +
Sbjct: 506 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAV 563
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 564 KAYSEVDGQVFQGRMLHVLPST 585
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 389 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 444
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 445 DFSNEEEVKKALKCNREYMGGRYIEVF 471
>gi|326512460|dbj|BAJ99585.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 35/206 (16%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVD-FALQ 113
P VV L +PF TE +AE F G DV H G+A+ L + D F
Sbjct: 161 PSTVVVLPKIPFAFTESQLAEVFPGYQFADVSVGH------GKAYIKLSPAQEADKFLAD 214
Query: 114 RNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL 173
+G+ V F+S + + D+ K + V+T +
Sbjct: 215 AASATIGKYSVNAFKSIQFDM--------------------------DKHKKTPVNT--V 246
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+++G P +D+I +FF+ + + S+H +GR E FV F + D AA+ KDR
Sbjct: 247 KVKGQPAETTEDEIREFFEGLSVGKISMHSLEIPNGRTVTEVFVTFNDPADVNAALEKDR 306
Query: 234 MTLGSRYIELFPSSHEEMDEALSRGR 259
+GSR++ + SS +E+ + + R R
Sbjct: 307 QKIGSRWVSIKRSSAKEVRKLIQRKR 332
>gi|148231978|ref|NP_001083138.1| RNA binding motif protein 12B [Xenopus laevis]
gi|37805207|gb|AAH60345.1| MGC68792 protein [Xenopus laevis]
Length = 654
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 107/239 (44%), Gaps = 46/239 (19%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GLP D+ FF GL I D VH EAF + A++ +
Sbjct: 4 VIRLQGLPVTAGSNDIRHFFSGLHIPDG-GVHITGGKYAEAFIIFATDEDARRAMRCSGG 62
Query: 118 NMGRRYVEVFRSKRQE--------------------------------YYKAIANEVSDV 145
+ + +E+F S + E Y K +A++ S+V
Sbjct: 63 FIKKSQIELFLSSKAEMQHTLEMNRKGNKDLGPSPNISKLLNVINKGIYQKNVASK-SNV 121
Query: 146 RGGS-------PHRSIPRAKSHDEGKDSAVHT---GILRLRGLPFSAGKDDIMDFFKDFV 195
GS +++PR K + + + G + L GLP+S + D+ DFF F
Sbjct: 122 EAGSDGSGAKHKEKNVPRPKYQGKKETRPIKDNSYGYVFLCGLPYSTSELDVKDFFHGFH 181
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
+ + +H ++ S+G G A+V+FA+ +D+KA++++D +G R I + S+ + EA
Sbjct: 182 VVD--VHFSVRSNGARDGNAYVKFASVQDAKASLSRDYEYIGHRRIAVKLSTEHKWIEA 238
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 10 GADGREMGAKRQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCT 69
G+DG GAK + P + G + N +YGYV L GLP+ +
Sbjct: 124 GSDGS--GAKHKEKNVPRPKYQGKKETRPIKDN---SYGYVF---------LCGLPYSTS 169
Query: 70 EVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
E+DV +FFHG +VDV F V N G A+ +L R+ + +G R + V
Sbjct: 170 ELDVKDFFHGFHVVDVHFSVRSNGARDGNAYVKFASVQDAKASLSRDYEYIGHRRIAVKL 229
Query: 129 SKRQEYYKAIANEVSDVRGGSPHRSIPRA--------------KSHDEGKDSAVHTGI-L 173
S ++ +A +D S H++ R+ K+H S + L
Sbjct: 230 STEHKWIEAGG--PTDEMQESAHKTRERSSRFSSKNHSSSRSPKTHRTRSRSPHNQQFYL 287
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
L + +S + DI FF D + + I ++ +G T E F+ N + + + +
Sbjct: 288 HLLNMSYSVERRDIKLFFGDPDIPDSQIKFLLDRNGDRTREGFMLVKNEKFYQKCLGLHK 347
Query: 234 MTLGSRYIELFPSSHEEMDEAL 255
L + ++P + ++M E +
Sbjct: 348 GLLNGCEVWVYPIARKDMLELI 369
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP +AG +DI FF + + +HIT G EAF+ FA ED++ AM
Sbjct: 4 VIRLQGLPVTAGSNDIRHFFSGLHIPDGGVHIT----GGKYAEAFIIFATDEDARRAMRC 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ IELF SS EM L R
Sbjct: 60 SGGFIKKSQIELFLSSKAEMQHTLEMNR 87
>gi|397502356|ref|XP_003821827.1| PREDICTED: epithelial splicing regulatory protein 1 [Pan paniscus]
Length = 268
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAA 228
+RLRGLP++A +DI+DF +F + +H+ +N GRP+G+AF++ +A+ + AA
Sbjct: 37 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAA 96
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRG 258
+ + RY+E+F S EEM+ L G
Sbjct: 97 QKCHKKNMKDRYVEVFQCSAEEMNFVLMGG 126
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFF---------HGLDIVDVLFVHKNNKFTGEAFCVLGYPLQV 108
+RLRGLP+ T D+ +F HG+ +V ++ + +G+AF + +
Sbjct: 37 CIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMV----LNHQGRPSGDAFIQMKSADRA 92
Query: 109 DFALQR-NRQNMGRRYVEVFRSKRQE 133
A Q+ +++NM RYVEVF+ +E
Sbjct: 93 FMAAQKCHKKNMKDRYVEVFQCSAEE 118
>gi|440804101|gb|ELR24980.1| Znfinger in Ran binding protein [Acanthamoeba castellanii str.
Neff]
Length = 732
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T ++ +RGLP+SA D+ FF + IH+ + GRP+G A+VEF++AE+ A+
Sbjct: 243 TKVIVMRGLPWSATDADVGMFFSGLDIVPGGIHLIHDHTGRPSGVAYVEFSSAEEVNNAL 302
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALS 256
+ +GSRYIE++PS + L+
Sbjct: 303 QRHNGFIGSRYIEVYPSDANSLTAILA 329
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV--DVLFVHKNN-KFTGEAFCVLGYPLQVDFALQR 114
V+ +RGLP+ T+ DV FF GLDIV + +H + + +G A+ +V+ ALQR
Sbjct: 245 VIVMRGLPWSATDADVGMFFSGLDIVPGGIHLIHDHTGRPSGVAYVEFSSAEEVNNALQR 304
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVS 143
+ +G RY+EV+ S +A++ +
Sbjct: 305 HNGFIGSRYIEVYPSDANSLTAILASQAA 333
>gi|226487874|emb|CAX75602.1| Heterogeneous nuclear ribonucleoprotein H' [Schistosoma japonicum]
Length = 150
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 15/99 (15%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL---------------SEDSIHITMNSDGRPTGEAF 216
++R+RGLPFSA DDI++FFK ++ + I+ +GR GEAF
Sbjct: 4 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVFTDCTIRGGKRGIYFPQGPNGRSNGEAF 63
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
+E + +D + AMA +G RYIE+F S EE++ A+
Sbjct: 64 IELDSKDDKEKAMAHHNEHMGRRYIEVFDSCSEELNNAM 102
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 66/154 (42%), Gaps = 38/154 (24%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLF------------------VHKNNKFTGEAF 99
VVR+RGLPF D+ FF G + V F N + GEAF
Sbjct: 4 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVFTDCTIRGGKRGIYFPQGPNGRSNGEAF 63
Query: 100 CVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS 159
L + A+ + ++MGRRY+EVF S + E+++ G P S P +
Sbjct: 64 IELDSKDDKEKAMAHHNEHMGRRYIEVFDS--------CSEELNNAMGSRPFSS-PNRRE 114
Query: 160 HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193
H ++RLRGLP+ K +I FF D
Sbjct: 115 H-----------VVRLRGLPYDTEKKEIYAFFND 137
>gi|40788328|dbj|BAA31657.2| KIAA0682 protein [Homo sapiens]
Length = 973
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 302 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 359
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + G R +E ++
Sbjct: 360 KQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG-------RILGENEEEEDLA 412
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AF+ F E +
Sbjct: 413 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITFMFPEHAV 470
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 471 KAYSEVDGQVFQGRMLHVLPST 492
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 144 DVRGGSPHRSIPRAKSH------------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 191
D RG + +P K ++ + + HT ++LRG PF+ + ++M+F
Sbjct: 270 DSRGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFL 327
Query: 192 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
L +I I N+ G TG FV+F+N E+ K A+ +R +G RYIE+F
Sbjct: 328 AP--LKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 378
>gi|158256324|dbj|BAF84133.1| unnamed protein product [Homo sapiens]
gi|189054403|dbj|BAG37176.1| unnamed protein product [Homo sapiens]
Length = 960
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + G R +E ++
Sbjct: 347 KQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG-------RILGENEEEEDLA 399
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AF+ F E +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPST 479
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
>gi|226497574|ref|NP_057280.2| probable RNA-binding protein 19 [Homo sapiens]
gi|226497654|ref|NP_001140170.1| probable RNA-binding protein 19 [Homo sapiens]
gi|226497734|ref|NP_001140171.1| probable RNA-binding protein 19 [Homo sapiens]
gi|308153566|sp|Q9Y4C8.3|RBM19_HUMAN RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
Length = 960
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + G R +E ++
Sbjct: 347 KQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG-------RILGENEEEEDLA 399
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AF+ F E +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPST 479
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
>gi|5912081|emb|CAB55987.1| hypothetical protein [Homo sapiens]
Length = 960
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + G R +E ++
Sbjct: 347 KQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG-------RILGENEEEEDLA 399
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AF+ F E +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPST 479
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
>gi|397525018|ref|XP_003832476.1| PREDICTED: probable RNA-binding protein 19 [Pan paniscus]
Length = 961
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + G R +E ++
Sbjct: 347 KQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG-------RILGENEEEEDLA 399
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AF+ F E +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPST 479
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
>gi|167517425|ref|XP_001743053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778152|gb|EDQ91767.1| predicted protein [Monosiga brevicollis MX1]
Length = 1117
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 102/208 (49%), Gaps = 18/208 (8%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQV 108
+++P F VR+ GLPF E ++ FF L +DV L K + +G AF +
Sbjct: 421 LTKPERFFTVRVLGLPFKAREPEIVGFFKPLKPIDVRLLFDKRKRSSGRAFVDFATKPEW 480
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR-GGSPHRSIP---RAKSHDEGK 164
AL++++ MG+RY+EV + + + I ++ + P + P R + D G+
Sbjct: 481 KKALEKHKSKMGKRYIEVTAAIPE---RNIMQQIEKLEPEDKPKKDYPAPLRPEDEDIGE 537
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNSDG-RPTGEAFVEFANA 222
+G L +R LP++ +D++ + F+ F LSE +H+ ++ + +P G AF+ F
Sbjct: 538 -----SGRLFVRNLPYACREDELRELFEAFGPLSE--LHMPIDGETKKPKGFAFITFVLP 590
Query: 223 EDSKAAMAK-DRMTLGSRYIELFPSSHE 249
E + A D R + + P+ H+
Sbjct: 591 EHASQAFQNLDNTIFQGRLLHVLPARHK 618
>gi|13279134|gb|AAH04289.1| RBM19 protein [Homo sapiens]
gi|13544005|gb|AAH06137.1| RBM19 protein [Homo sapiens]
gi|190689379|gb|ACE86464.1| RNA binding motif protein 19 protein [synthetic construct]
gi|190690741|gb|ACE87145.1| RNA binding motif protein 19 protein [synthetic construct]
Length = 960
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + G R +E ++
Sbjct: 347 KQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG-------RILGENEEEEDLA 399
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AF+ F E +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPST 479
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 144 DVRGGSPHRSIPRAKSH------------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 191
D RG + +P K ++ + + HT ++LRG PF+ + ++M+F
Sbjct: 257 DSRGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFL 314
Query: 192 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
L +I I N+ G TG FV+F+N E+ K A+ +R +G RYIE+F
Sbjct: 315 AP--LKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365
>gi|168278697|dbj|BAG11228.1| RNA binding motif protein 19 [synthetic construct]
Length = 960
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + G R +E ++
Sbjct: 347 KQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG-------RILGENEEEEDLA 399
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AF+ F E +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPST 479
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 144 DVRGGSPHRSIPRAKSH------------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFF 191
D RG + +P K ++ + + HT ++LRG PF+ + ++M+F
Sbjct: 257 DSRGAGQEQGMPAGKKRPPEARAETEKPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFL 314
Query: 192 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
L +I I N+ G TG FV+F+N E+ K A+ +R +G RYIE+F
Sbjct: 315 AP--LKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVF 365
>gi|114647138|ref|XP_522578.2| PREDICTED: probable RNA-binding protein 19 [Pan troglodytes]
gi|410216396|gb|JAA05417.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410216398|gb|JAA05418.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263956|gb|JAA19944.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263958|gb|JAA19945.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292596|gb|JAA24898.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292598|gb|JAA24899.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339181|gb|JAA38537.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339183|gb|JAA38538.1| RNA binding motif protein 19 [Pan troglodytes]
Length = 961
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + G R +E ++
Sbjct: 347 KQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG-------RILGENEEEEDLA 399
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AF+ F E +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPST 479
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
>gi|426374260|ref|XP_004053996.1| PREDICTED: probable RNA-binding protein 19 [Gorilla gorilla
gorilla]
Length = 960
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + G R +E ++
Sbjct: 347 KQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTRSWQG-------RILGENEEEEDLA 399
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AF+ F E +
Sbjct: 400 ESGRLFVRNLPYTSSEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITFMFPEHAV 457
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPST 479
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
>gi|350396590|ref|XP_003484604.1| PREDICTED: hypothetical protein LOC100745803 [Bombus impatiens]
Length = 885
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ L LP E+D+A+ FH I D LF+ + K +G C + Y V FA
Sbjct: 555 CILLTDLPSFTKEMDIAKLFHDWKIND-LFI-TSTKESGSVQC-MAY---VQFA------ 602
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK-DSAVHTGILRLR 176
+E ++ K I N+ + + + H++ + + + +R
Sbjct: 603 -----RIEDAKASVNTSLK-IGNKPVTATAITEDKFAQAKRDHEQNSMNQTASSDCIIMR 656
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLPF DI+DFF D + IH+ +N +G+P GE F EF A+++ A AK+ +
Sbjct: 657 GLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEALRATAKNGLPF 716
Query: 237 GSRY--IELFP 245
G IEL P
Sbjct: 717 GKNVPTIELVP 727
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 44/216 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ +RGLPF + D+ +FF + IV + +++N K GE FC + A +
Sbjct: 652 CIIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEALRATAK 711
Query: 115 NRQNMGRRY--VEVF-RSKRQEYYKAIANEVSDV-------------RGGSPHRSIPRAK 158
N G+ +E+ R+K E + ++ + R P +PR
Sbjct: 712 NGLPFGKNVPTIELVPRAKMLETLGMVDPQIMETQQQHFPPLQEQRPRFSGPMNHLPRFG 771
Query: 159 SHDEGKDS------------AVHTG-------------ILRLRGLPFSAGKDDIMDFFKD 193
+ G H G +L L +PF A ++I++FF D
Sbjct: 772 NSGFGPRCPPGLMGIPRHMLGRHLGSMDYVEGFGKPGCVLSLENVPFKADINEIIEFFGD 831
Query: 194 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
F + +++ N G PTG+A V FA+ +++ A+
Sbjct: 832 FDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 867
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 120 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLP 179
GRR F+S ++ N +D +G +RS + S+ + +R +P
Sbjct: 405 GRRNPHAFQSNNSQF-----NFDNDRQG---NRSSTNSSRFSNENKSSGGGHCVEVRNMP 456
Query: 180 FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 239
SA +D+ F+ + +D + + ++ G G A+V+F+ AE + A+ R GS
Sbjct: 457 LSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFSKAEGKELALGTTRFVRGSE 516
Query: 240 YIELFPSSHEEMDEAL 255
+E+ D+A+
Sbjct: 517 -VEVLHLDESIFDKAV 531
>gi|340716874|ref|XP_003396916.1| PREDICTED: hypothetical protein LOC100648364 [Bombus terrestris]
Length = 885
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ L LP E+D+A+ FH I D LF+ + K +G C + Y V FA
Sbjct: 555 CILLTDLPSFTKEMDIAKLFHDWKIND-LFI-TSTKESGSVQC-MAY---VQFA------ 602
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK-DSAVHTGILRLR 176
+E ++ K I N+ + + + H++ + + + +R
Sbjct: 603 -----RIEDAKASVNTSLK-IGNKPVTATAITEDKFAQAKRDHEQNSMNQTASSDCIIMR 656
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLPF DI+DFF D + IH+ +N +G+P GE F EF A+++ A AK+ +
Sbjct: 657 GLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEALRATAKNGLPF 716
Query: 237 GSRY--IELFP 245
G IEL P
Sbjct: 717 GKNVPTIELVP 727
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 44/216 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ +RGLPF + D+ +FF + IV + +++N K GE FC + A +
Sbjct: 652 CIIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLLNQNGKPAGECFCEFDTADEALRATAK 711
Query: 115 NRQNMGRRY--VEVF-RSKRQEYYKAIANEVSDV-------------RGGSPHRSIPRAK 158
N G+ +E+ R+K E + ++ + R P +PR
Sbjct: 712 NGLPFGKNVPTIELVPRAKMLETLGMVDPQIMETQQQHFPPLQEQRPRFSGPMNHLPRFG 771
Query: 159 SHDEGKDS------------AVHTG-------------ILRLRGLPFSAGKDDIMDFFKD 193
+ G H G +L L +PF A ++I++FF D
Sbjct: 772 NSGFGPRCPPGLMGIPRHMLGRHLGSMDYVEGFGKPGCVLSLENVPFKADINEIIEFFGD 831
Query: 194 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
F + +++ N G PTG+A V FA+ +++ A+
Sbjct: 832 FDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 867
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ +R +P SA +D+ F+ + +D + + ++ G G A+V+F+ AE + A+
Sbjct: 449 CVEVRNMPLSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFSKAEGKELALGT 508
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
R GS +E+ D+A+
Sbjct: 509 TRFVRGSE-VEVLHLDESIFDKAV 531
>gi|392332679|ref|XP_003752658.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 846
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 75/164 (45%), Gaps = 24/164 (14%)
Query: 43 PPPAYGYVSQP-----PPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNK 93
P A G V +P P P V+LRG PF+ TE +V EF L V + V H N
Sbjct: 274 PQEAAGKVEKPASQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNK- 332
Query: 94 FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 153
TG F L +V AL+ NR+ MG RY+EVFR K + S RG S
Sbjct: 333 -TGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREK----------QASAARGAPKSSS 381
Query: 154 IP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 194
P R E ++ +G L +R L +++ ++D+ F +
Sbjct: 382 APWQGRTLGEHEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAY 425
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++LRG PF+ + ++++F L +I I N+ G TG FV+ ++ E+ K A+
Sbjct: 295 TVKLRGAPFNVTEKNVLEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 352
Query: 232 DRMTLGSRYIELF 244
+R +G RYIE+F
Sbjct: 353 NREYMGGRYIEVF 365
>gi|403281594|ref|XP_003932266.1| PREDICTED: probable RNA-binding protein 19 [Saimiri boliviensis
boliviensis]
Length = 960
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 93/206 (45%), Gaps = 25/206 (12%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V V V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAVRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSA- 167
AL+ NR+ MG RY+EVFR K K G P S + G++
Sbjct: 347 KKALKCNREYMGGRYIEVFREKNVPTTK-----------GPPKNSAKSWQGRMLGENEEE 395
Query: 168 ---VHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANA 222
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AFV F
Sbjct: 396 EDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFVTFMFP 453
Query: 223 EDS-KAAMAKDRMTLGSRYIELFPSS 247
E + KA D R + + PS+
Sbjct: 454 EHAVKAYSEVDGQVFQGRMLHVLPST 479
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++M+F L ++ I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAVRIVRNAHGNKTGYIFV 338
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKKALKCNREYMGGRYIEVF 365
>gi|380818506|gb|AFE81126.1| putative RNA-binding protein 19 [Macaca mulatta]
gi|383412169|gb|AFH29298.1| putative RNA-binding protein 19 [Macaca mulatta]
Length = 960
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 92/202 (45%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K + G R +E ++
Sbjct: 347 KQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG-------RMLGENEEEEDLA 399
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AFV F E +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAV 457
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPST 479
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++ +F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
>gi|355786561|gb|EHH66744.1| hypothetical protein EGM_03792 [Macaca fascicularis]
Length = 960
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 92/202 (45%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K + G R +E ++
Sbjct: 347 KQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG-------RMLGENEEEEDLA 399
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AFV F E +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAV 457
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPST 479
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++ +F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
>gi|149063465|gb|EDM13788.1| RNA binding motif protein 19 (predicted) [Rattus norvegicus]
Length = 451
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
Query: 43 PPPAYGYVSQP-----PPFP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNK 93
P A G V +P P P V+LRG PF+ TE +V EF L V + V H N
Sbjct: 274 PQEAAGKVEKPASQKEPTTPYTVKLRGAPFNVTEKNVLEFLAPLKPVAIRIVRNAHGNK- 332
Query: 94 FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRS 153
TG F L +V AL+ NR+ MG RY+EVFR K + S RG S
Sbjct: 333 -TGYVFVDLSSEEEVKKALKCNREYMGGRYIEVFREK----------QASAARGAPKSSS 381
Query: 154 IP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
P R E ++ +G L +R L +++ ++D+ F + + S G
Sbjct: 382 APWQGRTLGEHEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYG-DQGQCGCAYGSGGD 440
Query: 211 PTG 213
P G
Sbjct: 441 PAG 443
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++LRG PF+ + ++++F L +I I N+ G TG FV+ ++ E+ K A+
Sbjct: 295 TVKLRGAPFNVTEKNVLEFLAP--LKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKKALKC 352
Query: 232 DRMTLGSRYIELF 244
+R +G RYIE+F
Sbjct: 353 NREYMGGRYIEVF 365
>gi|355564713|gb|EHH21213.1| hypothetical protein EGK_04225 [Macaca mulatta]
Length = 960
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 92/202 (45%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 289 EPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 346
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K + G R +E ++
Sbjct: 347 KQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG-------RMLGENEEEEDLA 399
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AFV F E +
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAV 457
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 458 KAYSEVDGQVFQGRMLHVLPST 479
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++ +F L +I I N+ G TG FV
Sbjct: 283 KPANQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYIFV 338
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 339 DFSNEEEVKQALKCNREYMGGRYIEVF 365
>gi|324501689|gb|ADY40749.1| Heterogeneous nuclear ribonucleoprotein H2 [Ascaris suum]
Length = 152
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+++ RGLP+S +++I FF+ S I +T N D RP+GEAFV F N ED + A+ +
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIVKITLTKNRDARPSGEAFVAFNNNEDYEYALTR 115
Query: 232 DRMTLGSRYIELF 244
D+ +G RYIE++
Sbjct: 116 DKQHMGKRYIEVW 128
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLD--IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQR 114
VV+ RGLP+ CTE ++ FF D IV + +++ + +GEAF ++AL R
Sbjct: 56 VVKCRGLPWSCTEEEIRIFFQPADRSIVKITLTKNRDARPSGEAFVAFNNNEDYEYALTR 115
Query: 115 NRQNMGRRYVEVF 127
++Q+MG+RY+EV+
Sbjct: 116 DKQHMGKRYIEVW 128
>gi|332250675|ref|XP_003274476.1| PREDICTED: probable RNA-binding protein 19 [Nomascus leucogenys]
Length = 997
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 326 EPTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFADFSNEEEV 383
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K K + G R + E
Sbjct: 384 KQALKCNREYMGGRYIEVFREKNIPTTKGAPKNTTKSWQGRILRENEEEEDLAE------ 437
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G FV F E +
Sbjct: 438 -SGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFGFVTFMFPEHAV 494
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 495 KAYSEVDGQVFQGRMLHVLPST 516
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++M+F L +I I N+ G TG F
Sbjct: 320 KPANQKEPTTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFA 375
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 376 DFSNEEEVKQALKCNREYMGGRYIEVF 402
>gi|402583247|gb|EJW77191.1| hypothetical protein WUBG_11899 [Wuchereria bancrofti]
Length = 82
Score = 67.0 bits (162), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKD----FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
I+R+RGLP+ + I++FF + +++ I SDGRPTG+AFV F N E +
Sbjct: 2 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDNEEAGQK 61
Query: 228 AMAKDRMTLGSRYIELF 244
A+ K + T+G+RYIELF
Sbjct: 62 ALTKHKRTIGTRYIELF 78
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFF----HGLDIVD--VLFVHKNN-KFTGEAFCVLGYPLQVDF 110
+VR+RGLP+DCTE + EFF +G + D +LFV+K++ + TG+AF +
Sbjct: 2 IVRMRGLPYDCTEAQILEFFAEGENGCKVTDGGILFVNKSDGRPTGDAFVMFDNEEAGQK 61
Query: 111 ALQRNRQNMGRRYVEVFR 128
AL ++++ +G RY+E+FR
Sbjct: 62 ALTKHKRTIGTRYIELFR 79
>gi|94536671|ref|NP_001035439.1| uncharacterized protein LOC678601 [Danio rerio]
gi|92096562|gb|AAI15345.1| Zgc:136953 [Danio rerio]
gi|190338538|gb|AAI63730.1| Zgc:136953 [Danio rerio]
Length = 209
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 165 DSAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+S H+G + +RGLPF A + D+ FF L+ +HI M +G+ TGEA VEF + E
Sbjct: 96 NSGFHSGHFVHMRGLPFRATESDVAHFFGP--LTPVRVHIDMGPNGKSTGEADVEFRSHE 153
Query: 224 DSKAAMAKDRMTLGSRYIELFPSS 247
D+ +AM+KD+ + RYIELF +S
Sbjct: 154 DAVSAMSKDKNHMQHRYIELFLNS 177
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE DVA FF L V V + + N K TGEA A+ +++
Sbjct: 105 VHMRGLPFRATESDVAHFFGPLTPVRVHIDMGPNGKSTGEADVEFRSHEDAVSAMSKDKN 164
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 165 HMQHRYIELF 174
>gi|195583688|ref|XP_002081648.1| GD25607 [Drosophila simulans]
gi|194193657|gb|EDX07233.1| GD25607 [Drosophila simulans]
Length = 628
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 19/137 (13%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+VR RGLP+ ++ D+A+FF GL++ L + + GEA D AL+R
Sbjct: 280 IVRARGLPWQSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKR 339
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ ++G RY+EV+R+ +++ AIA GG A + + S I+R
Sbjct: 340 HKHHIGTRYIEVYRASGEDFL-AIA-------GG--------ASNEAQAFLSKGAQVIIR 383
Query: 175 LRGLPFSAGKDDIMDFF 191
+RGLP+ A ++DFF
Sbjct: 384 MRGLPYDATAKQVLDFF 400
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 121 RRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPF 180
R V V ++ Q +K ANE+ ++ P S D+ D I+R RGLP+
Sbjct: 238 RDMVTVIQTLLQAGHKFAANELVNLVLE------PGICSIDDEVDGNC---IVRARGLPW 288
Query: 181 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240
+ DI FF+ +++ + + ++ GR GEA + F E A+ + + +G+RY
Sbjct: 289 QSSDQDIAKFFRGLNVAKGGVALCLSPLGRRNGEALIRFVCQEHRDMALKRHKHHIGTRY 348
Query: 241 IELFPSSHEE 250
IE++ +S E+
Sbjct: 349 IEVYRASGED 358
>gi|109098882|ref|XP_001106082.1| PREDICTED: probable RNA-binding protein 19 [Macaca mulatta]
Length = 998
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 92/202 (45%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 327 EPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 384
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K + G R +E ++
Sbjct: 385 KQALKCNREYMGGRYIEVFREKNVPTTNVAPKNTTKSWQG-------RMLGENEEEEDLA 437
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AFV F E +
Sbjct: 438 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAV 495
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 496 KAYSEVDGQVFQGRMLHVLPST 517
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++ +F L +I I N+ G TG FV
Sbjct: 321 KPANQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYIFV 376
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 377 DFSNEEEVKQALKCNREYMGGRYIEVF 403
>gi|196011702|ref|XP_002115714.1| hypothetical protein TRIADDRAFT_59686 [Trichoplax adhaerens]
gi|190581490|gb|EDV21566.1| hypothetical protein TRIADDRAFT_59686 [Trichoplax adhaerens]
Length = 341
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 24/196 (12%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
VR G D ++ D ++ + + ++ +H N PLQ + ++
Sbjct: 103 VRHEGFSRDTSKRDQSKIENLEERTNITLIHDKN-----------VPLQNKISEPMDKAT 151
Query: 119 MGRRYVEVFRSKRQ---------EYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
+ + E SKR + Y+ N S V S + +P +S E A +
Sbjct: 152 VTANF-ETVMSKRSTDKVCLFLLDAYQTTDNTRSKVSNVSMTQ-LPNKESDTEDNAPAKN 209
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++LRGLPF +++I +FF L ++ + N G+P G AFV+F N ED+ AM
Sbjct: 210 IITIKLRGLPFDVNEEEIKEFFHPTKL--ENTRLMTNHKGKPNGVAFVDFTNEEDACKAM 267
Query: 230 AKDRMTLGSRYIELFP 245
++ + +RYIELFP
Sbjct: 268 KSNKDYIRNRYIELFP 283
>gi|402887773|ref|XP_003907256.1| PREDICTED: probable RNA-binding protein 19 [Papio anubis]
Length = 998
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 91/202 (45%), Gaps = 17/202 (8%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQV 108
+P V+LRG PF+ TE +V EF L V + V H N TG F +V
Sbjct: 327 EPTTCHTVKLRGAPFNVTEKNVTEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEV 384
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
AL+ NR+ MG RY+EVFR K + G R +E ++
Sbjct: 385 KQALKCNREYMGGRYIEVFREKNIPTTNVAPKNTTKSWQG-------RMLGENEEEEDLA 437
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS- 225
+G L +R LP+++ ++D+ F + LSE +H ++S +P G AFV F E
Sbjct: 438 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHGV 495
Query: 226 KAAMAKDRMTLGSRYIELFPSS 247
KA D R + + PS+
Sbjct: 496 KAYSEVDGQVFQGRMLHVLPST 517
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 158 KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFV 217
K ++ + + HT ++LRG PF+ + ++ +F L +I I N+ G TG FV
Sbjct: 321 KPANQKEPTTCHT--VKLRGAPFNVTEKNVTEFLAP--LKPVAIRIVRNAHGNKTGYIFV 376
Query: 218 EFANAEDSKAAMAKDRMTLGSRYIELF 244
+F+N E+ K A+ +R +G RYIE+F
Sbjct: 377 DFSNEEEVKQALKCNREYMGGRYIEVF 403
>gi|328715828|ref|XP_001946054.2| PREDICTED: hypothetical protein LOC100165002 [Acyrthosiphon pisum]
Length = 1148
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G V + L + GLP + DI FF D VL D IHI ++ GRPTGE++ EF A
Sbjct: 888 GATPVVRSNCLYVYGLPTTVTNTDITQFFSDSVLP-DKIHIMLSKFGRPTGESYCEFGTA 946
Query: 223 EDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ + AA+ K++ +G + + P + M +A+++
Sbjct: 947 QQASAAIVKNQTFMGQNLVCVEPINRSLMIQAITK 981
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +F+ + E +HI G G+ F+ F+ ED++ AM
Sbjct: 4 IIRLQNLPWAANAADIRQYFQGLSIPEGGVHIV----GGEKGDVFISFSTDEDARQAMLS 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I L SS EM + + R
Sbjct: 60 DGGCIKDVQIRLLLSSRNEMQKVIDAAR 87
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++ L +P+ A I+DFF+ F L ++ N G+PTGEA V N +D+ A+
Sbjct: 1073 VVALDNVPYRADVQQIVDFFEGFELHSQNVIRRFNDFGKPTGEARVNLRNPQDAARAV 1130
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 57 PVVR-----LRGLPFDCTEVDVAEFFHGLDIVDVLFV--HKNNKFTGEAFCVLGYPLQVD 109
PVVR + GLP T D+ +FF + D + + K + TGE++C G Q
Sbjct: 891 PVVRSNCLYVYGLPTTVTNTDITQFFSDSVLPDKIHIMLSKFGRPTGESYCEFGTAQQAS 950
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIA 139
A+ +N+ MG+ V V R +AI
Sbjct: 951 AAIVKNQTFMGQNLVCVEPINRSLMIQAIT 980
>gi|47226618|emb|CAG07777.1| unnamed protein product [Tetraodon nigroviridis]
Length = 183
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I++++GLP+S DD++ FF + + + IH+T+N GRP+G AF+E + ED A+
Sbjct: 7 IVQVKGLPWSCTADDLLKFFSECRIRDGVKGIHLTVNRMGRPSGRAFIEMEHEEDVNKAL 66
Query: 230 AKDRMTLGSRYIE 242
K R LG RY+E
Sbjct: 67 EKHRQYLGPRYVE 79
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 34/185 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD-----VLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
+V+++GLP+ CT D+ +FF I D L V++ + +G AF + + V+ AL
Sbjct: 7 IVQVKGLPWSCTADDLLKFFSECRIRDGVKGIHLTVNRMGRPSGRAFIEMEHEEDVNKAL 66
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++RQ +G RYVE G SP ++ ++ + A I
Sbjct: 67 EKHRQYLGPRYVE---------------------GLSPPKAASTCYMYEVTERDA--EAI 103
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
++ A DD + FF +S+ + I DGRP+GEA V F +D+ AAM++D
Sbjct: 104 IKKAA---EAQADDGV-FFSPLPVSK--MLIEFGPDGRPSGEADVYFTRHQDAVAAMSRD 157
Query: 233 RMTLG 237
R +G
Sbjct: 158 RQHIG 162
>gi|449016117|dbj|BAM79519.1| similar to heterogeneous nuclear ribonucleoprotein H3, isoform a
[Cyanidioschyzon merolae strain 10D]
Length = 642
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 55/107 (51%), Gaps = 21/107 (19%)
Query: 172 ILRLRGLPFSAGKDDIMDFFK----------DFVLSED-----------SIHITMNSDGR 210
++RLRGLP+SA D+ ++ + D L ED I N GR
Sbjct: 313 VVRLRGLPWSATTRDVAEWIRQPPAKATMGADSSLLEDFIRRPLQVLPGGIVFVYNHQGR 372
Query: 211 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
TGE FV+FA+ ED+ + K +G RYIE+F SSH++M LSR
Sbjct: 373 KTGEVFVQFASPEDASRCLHKHEDRMGHRYIEVFLSSHQDMWNLLSR 419
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 24/106 (22%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHG---------------------LDIV--DVLFVHKNN-K 93
VVRLRGLP+ T DVAE+ L ++ ++FV+ + +
Sbjct: 313 VVRLRGLPWSATTRDVAEWIRQPPAKATMGADSSLLEDFIRRPLQVLPGGIVFVYNHQGR 372
Query: 94 FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIA 139
TGE F P L ++ MG RY+EVF S Q+ + ++
Sbjct: 373 KTGEVFVQFASPEDASRCLHKHEDRMGHRYIEVFLSSHQDMWNLLS 418
>gi|432874359|ref|XP_004072458.1| PREDICTED: probable RNA-binding protein 19-like [Oryzias latipes]
Length = 921
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 12/218 (5%)
Query: 36 SSSFMYNPPPAYGYVSQ---PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKN 91
SSS P A +Q P V+LRG+PF E + EF L + + +++
Sbjct: 264 SSSESMRPSKAKKTATQEMEPATEFTVKLRGVPFSVKEQQIKEFMTPLRPAAIRIGKNES 323
Query: 92 NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH 151
+ TG + L +V+ AL++N+ +G RY+EVF+ + D + P
Sbjct: 324 GQRTGYVYVDLHSEEEVNKALKKNKDYIGGRYIEVFKVDH-----SGGKAKKDPKDKEPD 378
Query: 152 RSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF-KDFVLSEDSIHITMNSDGR 210
+ R DE ++ TG L +R LP++ ++DI + F K LSE I N +
Sbjct: 379 FNFTRKLKEDEEEEDVSETGRLFVRNLPYTCTEEDIRELFSKHGPLSEVLFPID-NLTKK 437
Query: 211 PTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247
P G AFV + E++ A+A+ DR R + L PS+
Sbjct: 438 PKGFAFVTYMIPENAVTALAQLDRHVFQGRMLHLLPST 475
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++LRG+PFS + I +F L +I I N G+ TG +V+ + E+ A+ K
Sbjct: 289 TVKLRGVPFSVKEQQIKEFMTP--LRPAAIRIGKNESGQRTGYVYVDLHSEEEVNKALKK 346
Query: 232 DRMTLGSRYIELFPSSH 248
++ +G RYIE+F H
Sbjct: 347 NKDYIGGRYIEVFKVDH 363
>gi|47218706|emb|CAG05678.1| unnamed protein product [Tetraodon nigroviridis]
Length = 488
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 14/93 (15%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFV--------------LSEDSIHITMNSDGRPTGEAFVE 218
LRLRGLPF K++I+ FF + + + I + ++ GR TGEAFV+
Sbjct: 21 LRLRGLPFGCSKEEIVQFFSVSIPTSVSMCAWVEGLRIVPNGITLPVDYQGRSTGEAFVQ 80
Query: 219 FANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 81 FASKEIAEKALGKHKERIGHRYIEIFKSSRNEI 113
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 169 HTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
H+G + +RGLPF A ++DI FF L+ +HI +G+ TGEA VEF + ED+ A
Sbjct: 357 HSGHFVHMRGLPFRATENDIAKFFSP--LNPLRVHIDFAPNGKSTGEADVEFRSHEDAVA 414
Query: 228 AMAKDR 233
AM+KD+
Sbjct: 415 AMSKDK 420
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFF--------------HGLDIVD---VLFVHKNNKFTGEAFC 100
+RLRGLPF C++ ++ +FF GL IV L V + TGEAF
Sbjct: 20 TLRLRGLPFGCSKEEIVQFFSVSIPTSVSMCAWVEGLRIVPNGITLPVDYQGRSTGEAFV 79
Query: 101 VLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQE---YYK 136
+ AL ++++ +G RY+E+F+S R E YY+
Sbjct: 80 QFASKEIAEKALGKHKERIGHRYIEIFKSSRNEIRAYYE 118
>gi|334327209|ref|XP_001378263.2| PREDICTED: heterogeneous nuclear ribonucleoprotein H2-like
[Monodelphis domestica]
Length = 231
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 147 GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206
G S HR + D VH +RGLP+ ++DI +FF F + HI +
Sbjct: 72 GMSDHRYGDGGSTFQRTTDHCVH-----MRGLPYRVTENDIYNFFSPFNPVRE--HIEIG 124
Query: 207 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
DGR TGE VEFA ED+ AAM+KD+ + RY++LF +S
Sbjct: 125 PDGRVTGEVDVEFATHEDAVAAMSKDKANMQHRYVKLFLNS 165
>gi|403372892|gb|EJY86355.1| hypothetical protein OXYTRI_15124 [Oxytricha trifallax]
Length = 635
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 21/200 (10%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHKNNK--FTGEAFCVLGYPLQVDFALQ-R 114
++LRGLPF ++ +FF + V D + + + + TGE + A Q R
Sbjct: 447 LKLRGLPFSIKRDEINQFFSNFNYVRDSVKLGRTGEGLLTGEGAILFHSEEDSKKAFQQR 506
Query: 115 NRQNMGRRYVEVFRSKRQEY--YKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
Q++G R++E+++ +Y ++ + + V+ G R + I
Sbjct: 507 QGQSIGHRWIELYQITIADYQNFEEMQKQRRTVKLGKYITDSNRER-------------I 553
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK- 231
++LRGLPF DDI FFKD+ +++ + I +G+ TG V F + E ++ A
Sbjct: 554 MKLRGLPFQVQPDDITRFFKDYQVTKSDVVIE-EINGKKTGFGLVFFKDQETAQQAQENM 612
Query: 232 DRMTLGSRYIELFPSSHEEM 251
+R +G+RY+E+ + +M
Sbjct: 613 NRKKIGNRYVEIMEPTITDM 632
>gi|126324467|ref|XP_001378428.1| PREDICTED: probable RNA-binding protein 19 [Monodelphis domestica]
Length = 969
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 17/204 (8%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPL 106
V+ P V+LRG PF+ TE +V EF L + + V H N TG F
Sbjct: 274 VTAPTTAYTVKLRGAPFNVTEQNVREFLLPLKPMAIRIVRNAHGNK--TGYVFVDFNSEG 331
Query: 107 QVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
V+ AL+RN+ MG RY+EVFR K + + G+ R DE ++
Sbjct: 332 DVEKALKRNKDYMGGRYIEVFREKGTQG-------TPTHQKGNQKAWQGRELKEDEEEED 384
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAED 224
+G L +R LP+++ ++D+ F + LSE +H ++ +P G AF+ F E
Sbjct: 385 LADSGRLFVRNLPYTSTEEDLEKLFAKYGPLSE--VHYPIDGLTKKPKGFAFITFMFPEH 442
Query: 225 SKAAMAK-DRMTLGSRYIELFPSS 247
+ A A+ D R + L PS+
Sbjct: 443 AVKAYAEVDGQIFQGRMLHLLPST 466
>gi|383853070|ref|XP_003702047.1| PREDICTED: uncharacterized protein LOC100882770 [Megachile
rotundata]
Length = 886
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 21/191 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ L LP E+D+A+ FH I D LF+ ++K +G A Y V FA
Sbjct: 556 CILLTDLPSFTKEMDIAKLFHDWKIND-LFI-TSSKESGSA----QYMAYVQFA------ 603
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK-DSAVHTGILRLR 176
+E ++ K I N+ + + + H++ + + + +R
Sbjct: 604 -----RIEDAKASVNASLK-IGNKPVTATAITEEKFAQAKRDHEQASMNQTASSDCVIMR 657
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLPF DI+DFF D + IH+ +N G+P GE F EF +++ A AK+ +
Sbjct: 658 GLPFQTIDRDILDFFSDIGIVPHRIHMLLNQSGKPAGECFCEFDTTDEALRATAKNGLPF 717
Query: 237 GSRY--IELFP 245
G IEL P
Sbjct: 718 GKNVPTIELVP 728
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+L L +PF A ++I++FF DF + +++ N G PTG+A V FA+ +++ A+
Sbjct: 811 VLSLENVPFKADINEIIEFFGDFDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 868
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
+E K + + +R +P SA +D+ F+ + +D + + ++ G G A+V+F+
Sbjct: 439 NESKSGSGTGHCVEVRNMPLSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFS 498
Query: 221 NAEDSKAAMAKDRMTLGS 238
AE + A++ R GS
Sbjct: 499 KAEGKELALSTPRYVRGS 516
>gi|395530818|ref|XP_003767484.1| PREDICTED: heterogeneous nuclear ribonucleoprotein F-like
[Sarcophilus harrisii]
Length = 344
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLP+ A +DI FF L +HI + DG+ TGEA V+F ED+ AAMAK+
Sbjct: 191 VHMRGLPYKATVNDIYHFFSP--LCPLRVHIEIGQDGKATGEADVDFVTHEDAVAAMAKE 248
Query: 233 RMTLGSRYIELF 244
+ + RYIELF
Sbjct: 249 KTYMQHRYIELF 260
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G+L +RGLPF K+ I FF + + I + M+ G+ TG A V+FA+ E ++ A+
Sbjct: 19 GLLCIRGLPFGCTKETIRHFFSELEMVPSGIILPMDFQGKSTGTALVQFASQEAAEIAIR 78
Query: 231 KDR 233
K +
Sbjct: 79 KHK 81
>gi|395754533|ref|XP_003779794.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein H-like [Pongo abelii]
Length = 440
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+ + GLP+ A ++DI +FF +HI + DGR TGEA VEF ED+ AAM+K
Sbjct: 281 CVHMCGLPYRATENDIYNFFX--TAQSWRVHIVIGPDGRVTGEANVEFVTXEDAVAAMSK 338
Query: 232 DRMTLGSRYIELFPSS 247
D+ RY+ELF S
Sbjct: 339 DKANTHHRYVELFLDS 354
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 33/201 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
+++++ P C V FF I + + F++ + + +GE F L +V A
Sbjct: 12 IMKVQRXPXSCPANKVQGFFSECKIXNKAQRIHFIYSREGRPSGETFAEL-ESXEVKSAR 70
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV--HT 170
+++++ +G RYV VF+S E + + G DS+V +
Sbjct: 71 KKDKETIGHRYVSVFKSNNVEMDGVLKHS---------------------GPDSSVMAND 109
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
G + LPF K++I+ FF + + I + ++ GR TGEAFV++A+ E ++ +
Sbjct: 110 GFV----LPFECSKEEIVQFFSWLEIVPNGITLMVDFQGRSTGEAFVQYASQEIAENVLE 165
Query: 231 KDRMTLGSRYIELFPSSHEEM 251
K + + YI++F SS E+
Sbjct: 166 KHKERIRHMYIKIFKSSRAEV 186
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
I++++ P S + + FF + + + IH + +GRP+GE F E + E K+A
Sbjct: 12 IMKVQRXPXSCPANKVQGFFSECKIXNKAQRIHFIYSREGRPSGETFAELESXE-VKSAR 70
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEAL 255
KD+ T+G RY+ +F S++ EMD L
Sbjct: 71 KKDKETIGHRYVSVFKSNNVEMDGVL 96
>gi|149052455|gb|EDM04272.1| heterogeneous nuclear ribonucleoprotein H1, isoform CRA_a [Rattus
norvegicus]
Length = 96
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSKAAM 229
++++RGLP+S D++ FF D + + I +GRP+GEAFVE + ++ K A+
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 230 AKDRMTLGSRYIE 242
KDR T+G RY+E
Sbjct: 72 KKDRETMGHRYVE 84
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVH-KNNKFTGEAFCVLGYPLQVDFAL 112
VV++RGLP+ C+ +V FF I + + F++ + + +GEAF L +V AL
Sbjct: 12 VVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLAL 71
Query: 113 QRNRQNMGRRYVE 125
+++R+ MG RYVE
Sbjct: 72 KKDRETMGHRYVE 84
>gi|300122335|emb|CBK22907.2| unnamed protein product [Blastocystis hominis]
Length = 546
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSED-----SIHITMNSDGRPTGEAFVEFANAEDSKA 227
L+LRGLP++A K++I FF + D +I I ++ RP+GEAFV F++ EDS
Sbjct: 436 LKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNKQRPSGEAFVTFSSVEDSAK 495
Query: 228 AMAKDRMTLGSRYIELFP 245
+ LG RYIE+FP
Sbjct: 496 GLEYHLKNLGKRYIEIFP 513
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD------VLFVHKNNKF--TGEAFCVLGYPLQVD 109
++LRGLP+ T+ ++A FF L++ + + ++NK +GEAF
Sbjct: 435 TLKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNKQRPSGEAFVTFSSVEDSA 494
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYK 136
L+ + +N+G+RY+E+F ++YY+
Sbjct: 495 KGLEYHLKNLGKRYIEIFPLFNKDYYR 521
>gi|405971235|gb|EKC36082.1| RNA-binding protein 12 [Crassostrea gigas]
Length = 487
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 24/224 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI------VDVLFVHKNNKFTGEAFCVLGYPLQVDFA 111
+++++GL + +VDV EFF G +I + + + KN + TG AF + A
Sbjct: 75 IIQMKGLGINGKKVDVVEFFKGCEIAKNGEGIHIEYDIKN-RCTGTAFIEMSTLSDFQTA 133
Query: 112 LQRNRQNMGRRYVEV----FRSKRQEYYKA---IANEVSDVRGGSPHRSIP------RAK 158
L + + R + V R Q + + +AN+ S+ P P R
Sbjct: 134 LTFDGKMFNSRLIRVSAGSLRDVEQLHERMREMMANKQSEEPDKRPLLPNPTNIEPNRIL 193
Query: 159 SHDEGKDSAVHTGI--LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
+ D + + T + + L+GLP DI F +++ IHI +S+GRP GEAF
Sbjct: 194 APDGEYRNRITTNLHCVHLQGLPPHVVAKDIAKLFDGIDIAQRGIHIVHDSNGRPLGEAF 253
Query: 217 VEFA-NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
VEF+ N+E KA DR + + L P EM + L + R
Sbjct: 254 VEFSDNSECEKALNMPDR-CIADHEVSLKPIPKSEMVDILKQIR 296
>gi|395513917|ref|XP_003761168.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein 19
[Sarcophilus harrisii]
Length = 954
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 98/220 (44%), Gaps = 22/220 (10%)
Query: 34 PPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HK 90
PP+S P A S+P V+LRG PF+ TE +V EF L V + V H
Sbjct: 265 PPASKGEVTKPAAQ---SEPTTAYTVKLRGAPFNVTEQNVREFLVPLKPVAIRIVRNAHG 321
Query: 91 NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSP 150
N TG F V+ AL+ N++ MG RY+EVFR K + + D +
Sbjct: 322 NK--TGYVFVDFSSEGDVEKALKHNKEYMGGRYIEVFREKGPR----VGPKPQDKKVWQG 375
Query: 151 HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-D 208
+ D +G L +R LP+++ ++D+ F + LSE IH ++
Sbjct: 376 RELKEGEEEED-----LADSGRLFVRNLPYTSTEEDLEKIFAKYGPLSE--IHYPIDGLT 428
Query: 209 GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247
+P G AFV + E + A A+ D R + + PS+
Sbjct: 429 KKPKGFAFVTYMFPEHAVKAFAEVDGQVFQGRMLHVLPST 468
>gi|307197792|gb|EFN78921.1| RNA-binding protein 12 [Harpegnathos saltator]
Length = 885
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 21/191 (10%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ L LP E+D+A+ FH I D+ + T + Y V FA
Sbjct: 553 CILLTDLPSFTKEMDIAKLFHDWKINDLFITNSKEGGTTQ------YMAYVQFA------ 600
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK-DSAVHTGILRLR 176
+E +S K I N+ S + H++ + + + +R
Sbjct: 601 -----RLEDAKSSITASLK-IGNKPVTATAISEDAFSQAKREHEQASMNQTTSSDCIIMR 654
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLPF DI+DFF D + IH+ +N +G+P GE F EF +++ A AK+ +
Sbjct: 655 GLPFQTIDRDILDFFSDIGIVPHRIHMMLNQNGKPAGECFCEFDTTDEALRATAKNGLPF 714
Query: 237 GSRY--IELFP 245
G +EL P
Sbjct: 715 GKNVPTMELVP 725
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+L L +PF A ++I+DFF DF + D + N G PTG+A V FA+ +++ A+
Sbjct: 810 VLSLENVPFKADVNEIIDFFGDFDVKRDDVIRRYNDRGMPTGDARVAFASPSEAQRAL 867
>gi|326674797|ref|XP_003200207.1| PREDICTED: RNA-binding protein 12B-A [Danio rerio]
Length = 685
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 8/230 (3%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF 87
P G P SS+F G + ++L G+PF T+ +V FF GL + D+LF
Sbjct: 128 PEMRGRPASSTFSEARRQRDGDAPERAEV-YLKLTGMPFSATKDNVHNFFAGLKVDDILF 186
Query: 88 VHKNNK--FTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV-SD 144
+ KN + F+G + L+R+RQ MG RY+++ R +E+ K V +D
Sbjct: 187 L-KNPRGMFSGNSMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEEWLKEGGLIVAAD 245
Query: 145 VRGGSPHRSIPRAKSHDEGKDSAVHTG---ILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 201
+R +P + S + + LP K D+ F + L +D I
Sbjct: 246 MRKRTPVERVRSRSPISYRSRSRSPSHEEYCIMFENLPPLVEKRDVRVFLQPVALKDDQI 305
Query: 202 HITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
I + + A V F + D A +A ++ + ++ + + P S E+M
Sbjct: 306 IIFSSKKDDKSKSAVVVFRSLTDYCAGLAHNKEMMYNKVVYVSPISKEKM 355
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GL +AG +DI +FF + + +HI G EAF+ FA+ ED++ AM++
Sbjct: 4 VIRLQGLRVTAGSEDIRNFFTGLRIPDGGVHII----GGELEEAFIIFASDEDARRAMSR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
+ + LF SS EM L
Sbjct: 60 SGGCIKGSTVNLFLSSKSEMQSVL 83
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 79/189 (41%), Gaps = 12/189 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ LP + DV F + + D ++F K + + A V L
Sbjct: 276 CIMFENLPPLVEKRDVRVFLQPVALKDDQIIIFSSKKDDKSKSAVVVFRSLTDYCAGLAH 335
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRG--GSPHRSIPRAKSHDEGKDSAVHTGI 172
N++ M + V V +++ + + + D RG RS ++S DS +
Sbjct: 336 NKEMMYNKVVYVSPISKEKMVTMLESSI-DARGEEKGSRRSAEASQSQRNTPDSQLRC-- 392
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
L +R LPF K +IMDFF + L+ED + + + G GEA V F + K AM
Sbjct: 393 LYVRNLPFDVRKVEIMDFFHGYALTEDRVILLRDERGAGLGEALVIF---QTEKEAMTGQ 449
Query: 233 RMTLGSRYI 241
+ G R++
Sbjct: 450 SLN-GQRFL 457
>gi|300120417|emb|CBK19971.2| unnamed protein product [Blastocystis hominis]
Length = 378
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSED-----SIHITMNSDGRPTGEAFVEFANAEDSK 226
L+LRGLP++A K++I FF + D +I I ++ RP+GEAFV F++ EDS
Sbjct: 258 TLKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNLQRPSGEAFVTFSSVEDSA 317
Query: 227 AAMAKDRMTLGSRYIELFP 245
+ LG RYIE+FP
Sbjct: 318 KGLEYHLKNLGKRYIEIFP 336
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI-------VDVLFVHKN-NKFTGEAFCVLGYPLQVD 109
++LRGLP+ T+ ++A FF L++ + ++ N + +GEAF
Sbjct: 258 TLKLRGLPYTATKEEIAAFFAPLEVPRDAKGELTIVIGQDNLQRPSGEAFVTFSSVEDSA 317
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYK 136
L+ + +N+G+RY+E+F ++YY+
Sbjct: 318 KGLEYHLKNLGKRYIEIFPLFNKDYYR 344
>gi|147898530|ref|NP_001089482.1| uncharacterized protein LOC734533 [Xenopus laevis]
gi|66910772|gb|AAH97695.1| MGC115235 protein [Xenopus laevis]
Length = 668
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 19/213 (8%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ + G+P + T+V++ FF GL + DV+F+ + + G A AL+R+
Sbjct: 145 IYVHGMPLNTTKVEIKPFFAGLSVEDVIFLKYPSGLRNGNAIVRFATSGDAHEALKRSGH 204
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEV----------SDVRGGSPHRS---IPRAKSHDEGK 164
MG V + S E+ KA SD R S S + RA++ +
Sbjct: 205 LMGSTPVSLMLSDETEWTKAGGTRARKRESSPVTSSDDRKKSVSHSRHELSRARARSPYE 264
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
+ VH L LP+ K DI F + + + I + G+ T E FV+ +
Sbjct: 265 ERFVH-----LINLPYDVNKRDIKAHFGNLAMKDSQITFLRDWSGKRTREGFVKLTSLSQ 319
Query: 225 SKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+ A A+ SR +++ P S +M + ++R
Sbjct: 320 YRDACAQHGRVFCSRLVDVLPISERDMLDLIAR 352
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 3/197 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V++L GL + + +D+ FF GL+I +++ GEAF + A+ + +
Sbjct: 31 VIKLHGLSTEASSLDIRHFFSGLNIPKG-YIYITGGQYGEAFIIFANYEDARQAINYSGR 89
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
+ V++ S E +A+ +P + + G T + + G
Sbjct: 90 PLKNSCVQLSFSSEAEMQQALDEISRRYNAANPASTNGTPIYKETGYFKKRDTSYIYVHG 149
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
+P + K +I FF + ED I + S G G A V FA + D+ A+ + +G
Sbjct: 150 MPLNTTKVEIKPFFAGLSV-EDVIFLKYPS-GLRNGNAIVRFATSGDAHEALKRSGHLMG 207
Query: 238 SRYIELFPSSHEEMDEA 254
S + L S E +A
Sbjct: 208 STPVSLMLSDETEWTKA 224
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+++L GL A DI FF + + I+IT G GEAF+ FAN ED++ A+
Sbjct: 31 VIKLHGLSTEASSLDIRHFFSGLNIPKGYIYIT----GGQYGEAFIIFANYEDARQAINY 86
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
L + ++L SS EM +AL
Sbjct: 87 SGRPLKNSCVQLSFSSEAEMQQAL 110
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 13/177 (7%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHK-NNKFTGEAFCVLGYPLQVDFALQRN 115
V L LP+D + D+ F L + D + F+ + K T E F L Q A ++
Sbjct: 268 VHLINLPYDVNKRDIKAHFGNLAMKDSQITFLRDWSGKRTREGFVKLTSLSQYRDACAQH 327
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIA-NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG--- 171
+ R V+V ++ IA +E R S + P+ S + H+G
Sbjct: 328 GRVFCSRLVDVLPISERDMLDLIARSEKKPGRDRSSRKDSPKKCSQES------HSGRGK 381
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+ LR K DI FF F L E+ I + + +G GEA V F+ +++++
Sbjct: 382 CIYLRNFASDVSKTDIQSFFSGFSLKEEDIFLLYDDNGIGLGEALVLFSTEKEAEST 438
>gi|74214262|dbj|BAE40375.1| unnamed protein product [Mus musculus]
Length = 512
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
VVR RGLP+ ++ DVA FF GL+I L ++ + GEA Q D ALQR
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 115 NRQNMGRRYVEVFRSKRQEYYK 136
++ +MG RY+EV+++ +E+ K
Sbjct: 308 HKHHMGVRYIEVYKATGEEFVK 329
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++R RGLP+ + D+ FFK ++ + + +N+ GR GEA + F ++E A+ +
Sbjct: 248 VVRARGLPWQSSDQDVARFFKGLNIARGGVALCLNAQGRRNGEALIRFVDSEQRDLALQR 307
Query: 232 DRMTLGSRYIELFPSSHEE 250
+ +G RYIE++ ++ EE
Sbjct: 308 HKHHMGVRYIEVYKATGEE 326
>gi|47226530|emb|CAG08546.1| unnamed protein product [Tetraodon nigroviridis]
Length = 944
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN--KFTGEAFCVLGYPLQV 108
++P V+LRG+PF+ E + EF L + + KN+ TG + L QV
Sbjct: 299 TEPATGFTVKLRGVPFNVKEQQIREFMTPLKPAAIR-IGKNDSGNRTGYVYVDLHSEEQV 357
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168
+ AL++N+ +G RY+EVFR D R RS R E ++
Sbjct: 358 EKALKKNKDYIGGRYIEVFRVDNSG-----GKARRDKRDKDIDRSFTRNLKEGEEEEDVA 412
Query: 169 HTGILRLRGLPFSAGKDDIMDFF-KDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSK 226
+G L +R LP++ ++++ + F K LSE +H ++S + G AF+ + E++
Sbjct: 413 ESGRLFVRNLPYTCTEEELKELFTKHGPLSE--MHFPIDSLTKKSKGFAFITYMIPENAV 470
Query: 227 AAMAK-DRMTLGSRYIELFPSS 247
AA+A+ D R + L PS+
Sbjct: 471 AALAQLDGHIFQGRMLHLLPST 492
>gi|339253436|ref|XP_003371941.1| RNA-binding protein 35B [Trichinella spiralis]
gi|316967724|gb|EFV52114.1| RNA-binding protein 35B [Trichinella spiralis]
Length = 564
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%)
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223
+D + ++R RGLP+ + D+ FF ++ + + ++ GR GEA V F NAE
Sbjct: 385 QDVVESSTVIRARGLPWQSSDQDVARFFVGLNIARGGVALCLSPQGRRNGEALVRFENAE 444
Query: 224 DSKAAMAKDRMTLGSRYIELFPSSHEE 250
+ A+ + R +GSRYIE++ S+ E+
Sbjct: 445 HRELALKRHRHFMGSRYIEVYRSTGED 471
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V+R RGLP+ ++ DVA FF GL+I L + + GEA + AL+R
Sbjct: 393 VIRARGLPWQSSDQDVARFFVGLNIARGGVALCLSPQGRRNGEALVRFENAEHRELALKR 452
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVS 143
+R MG RY+EV+RS +++ A + S
Sbjct: 453 HRHFMGSRYIEVYRSTGEDFLNIAAVQYS 481
>gi|213514986|ref|NP_001135185.1| Heterogeneous nuclear ribonucleoprotein H3 [Salmo salar]
gi|209149642|gb|ACI32984.1| Heterogeneous nuclear ribonucleoprotein H3 [Salmo salar]
Length = 204
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ +RGLPF A + DI +FF L+ +HI +G+ TGEA VEF + ED+ +AM+KD
Sbjct: 100 VHMRGLPFRATEGDIANFFSP--LTPVRVHIDFGPNGKSTGEADVEFRSHEDAVSAMSKD 157
Query: 233 RMTLGSRYIELFPSS 247
+ + RYIELF +S
Sbjct: 158 KNHMQHRYIELFLNS 172
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V +RGLPF TE D+A FF L V V + N K TGEA A+ +++
Sbjct: 100 VHMRGLPFRATEGDIANFFSPLTPVRVHIDFGPNGKSTGEADVEFRSHEDAVSAMSKDKN 159
Query: 118 NMGRRYVEVF 127
+M RY+E+F
Sbjct: 160 HMQHRYIELF 169
>gi|194747277|ref|XP_001956079.1| GF25026 [Drosophila ananassae]
gi|190623361|gb|EDV38885.1| GF25026 [Drosophila ananassae]
Length = 1037
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLAIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +R +PF A DI+ FF D+ LS D I N DG+PTG+ V F + ++++A
Sbjct: 962 VVAMRNVPFKAELKDILRFFGDYKLSPDDIIRRFNDDGKPTGDTRVAFESPAEARSAYES 1021
Query: 232 DR 233
R
Sbjct: 1022 RR 1023
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T +R+ L S DI +F+ + + I I M +G TG A+VEF+ ++ A+
Sbjct: 378 TCYIRMNSLCPSTSYSDIRKYFQGLYIPHNGIKI-MQVNGNRTGVAYVEFSRVSSAQKAL 436
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSR 257
++ R I++ P EE ++A R
Sbjct: 437 QRNNTMFRDRQIQITPVGDEEFEQAEER 464
>gi|348528569|ref|XP_003451789.1| PREDICTED: probable RNA-binding protein 19 [Oreochromis niloticus]
Length = 926
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 9/200 (4%)
Query: 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVD 109
++P V+LRG+PF+ E + EF L V + +++ TG + L +V+
Sbjct: 283 TEPTTEFTVKLRGVPFNVKEKQIREFMTPLKPAAVRIGKNESGNRTGYVYVDLHSEEEVE 342
Query: 110 FALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVS-DVRGGSPHRSIPRAKSHDEGKDSAV 168
AL++N+ +G RY+EVFR A A + D + R+ R DE ++
Sbjct: 343 KALKKNKDYIGGRYIEVFR------VDAFAGKNKRDGKEKETDRNFSRKLKEDEEEEDVS 396
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+G L +R LP++ ++DI + F D + RP G AFV + E++ A
Sbjct: 397 ESGRLFIRNLPYTCTEEDIKELFSKHGPLSDVLFPIDTLTKRPKGFAFVTYMIPENAVTA 456
Query: 229 MAK-DRMTLGSRYIELFPSS 247
+A+ D R + L PS+
Sbjct: 457 LAQLDGHIFQGRMLHLLPST 476
>gi|74355899|gb|AAI03655.1| Grsf1 protein, partial [Rattus norvegicus]
Length = 142
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM--NSDGRPTGEAFVEFANAEDSKAAMA 230
+ +RGLPF A DI++FF + ITM +S G+ TGEA V F ED+ AAM
Sbjct: 65 VHMRGLPFQANAQDIINFFAPL----KPVRITMEYSSSGKATGEADVHFDTHEDAVAAML 120
Query: 231 KDRMTLGSRYIELFPSS 247
KDR + RYIELF +S
Sbjct: 121 KDRSHVQHRYIELFLNS 137
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNN-KFTGEAFCVLGYPLQVDFAL 112
P V +RGLPF D+ FF L V + + ++ K TGEA A+
Sbjct: 60 PSLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAM 119
Query: 113 QRNRQNMGRRYVEVF 127
++R ++ RY+E+F
Sbjct: 120 LKDRSHVQHRYIELF 134
>gi|195439718|ref|XP_002067706.1| GK12567 [Drosophila willistoni]
gi|194163791|gb|EDW78692.1| GK12567 [Drosophila willistoni]
Length = 1092
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEVQVRLLLSSRAEMQKVIETAR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 169 HTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
H G ++ +R +PF A DI+ FF D+ LS I N DG+PTG+A V F N ++++
Sbjct: 1013 HPGCVVAMRNVPFKADLKDILRFFNDYKLSPHDIIRRFNDDGKPTGDARVAFENPSEARS 1072
Query: 228 AMAKDR 233
A R
Sbjct: 1073 AFESRR 1078
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T +++ G+ S D+ +F + + I I M G TG A+VEF+ ++ A+
Sbjct: 400 TCYIKISGMCPSTSYSDLRKYFSGLYIPHNGIKI-MTVHGNRTGVAYVEFSRVSSAQKAL 458
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+++ R +++ P EE ++A + R
Sbjct: 459 SRNNTMFRDRLVQIVPIGDEEFEQAEEKLR 488
>gi|195021602|ref|XP_001985427.1| GH14505 [Drosophila grimshawi]
gi|193898909|gb|EDV97775.1| GH14505 [Drosophila grimshawi]
Length = 1049
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLAIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEVQVRLLLSSRAEMQKVIETAR 87
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +R +PF A DI+ FF D+ LS D I N DG+PTG+A V F + ++++A
Sbjct: 974 VVAMRNVPFKADLKDILRFFSDYKLSPDDIIRRFNDDGKPTGDARVAFESVVEARSAFES 1033
Query: 232 DR 233
R
Sbjct: 1034 RR 1035
>gi|301632397|ref|XP_002945272.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H-like, partial
[Xenopus (Silurana) tropicalis]
Length = 218
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 5/83 (6%)
Query: 157 AKSHDEGKD--SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213
A+++ G D + H+G + +RGLPF A + DI +FF L+ +HI + +DGR TG
Sbjct: 138 AQAYGGGADGTTGFHSGHFVHMRGLPFRATESDIANFFSP--LTPIRVHIDVGADGRATG 195
Query: 214 EAFVEFANAEDSKAAMAKDRMTL 236
EA VEFA ED+ AAM+KD+ +
Sbjct: 196 EADVEFATHEDAVAAMSKDKNNM 218
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 199 DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ I +T++ GR TGEAFV+FA+ E ++ A+ K + +G RYIE+F SS E+
Sbjct: 6 NGITLTVDYQGRSTGEAFVQFASKEIAENALGKHKERIGHRYIEIFKSSRSEI 58
>gi|328790346|ref|XP_003251410.1| PREDICTED: hypothetical protein LOC100578631 [Apis mellifera]
Length = 878
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ L LP E+D+A+ FH I D LF+ + K +G C + Y V FA
Sbjct: 548 CILLTDLPTFTKEMDIAKLFHDWKIND-LFI-TSTKESGSVQC-MAY---VQFA------ 595
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK-DSAVHTGILRLR 176
+E ++ K I N+ + + + H++ + + + +R
Sbjct: 596 -----RIEDAKASVNTSLK-IGNKPVTATAITEEKFAQAKRDHEQNSMNQTASSDCVIMR 649
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLPF DI+DFF D + IH+ ++ +G+P GE F EF A+++ A AK+ +
Sbjct: 650 GLPFQTIDRDILDFFSDIGIVPHRIHM-LHQNGKPAGECFCEFDTADEALRATAKNGLPF 708
Query: 237 GSRY--IELFP 245
G IEL P
Sbjct: 709 GKNVPTIELVP 719
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 44/216 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV--DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V +RGLPF + D+ +FF + IV + +H+N K GE FC + A +N
Sbjct: 645 CVIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLHQNGKPAGECFCEFDTADEALRATAKN 704
Query: 116 RQNMGRRY--VEVF-RSKRQEYYKAIANEVSDV-------------RGGSPHRSIPRAKS 159
G+ +E+ R+K E + ++ + R P +PR +
Sbjct: 705 GLPFGKNVPTIELVPRAKMLETLGMVDPQIMETQQQHFPPLQEQRPRFSGPMNHLPRFGN 764
Query: 160 ---------------------HDEGKDSAVHT-----GILRLRGLPFSAGKDDIMDFFKD 193
H D V +L L +PF A ++I++FF D
Sbjct: 765 SGFGPRCPPGLMGIPRHMLGRHPGSMDYVVEGFGKPGCVLSLENVPFKADINEIIEFFGD 824
Query: 194 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
F + +++ N G PTG+A V FA+ +++ A+
Sbjct: 825 FDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 860
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 120 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLP 179
GRR F++ ++ NE S RG S R + ++G H + +R +P
Sbjct: 401 GRRNPHAFQTNSSQFN--FDNERS--RG-----STNRFSNENKGNSGGGHC--VEVRNMP 449
Query: 180 FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR 239
SA +D+ F+ + +D + + ++ G G A+V+F+ AE + A+ R GS
Sbjct: 450 LSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFSKAEGKELALGTTRFVRGSE 509
Query: 240 YIELFPSSHEEMDEAL 255
+E+ D+A+
Sbjct: 510 -VEVLHLDESIFDKAV 524
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 16/200 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFVHKNN--KFTGEAFCVLGYPLQVDFALQR 114
V +R +P T DV F G+ I D L + +N G A+ + AL
Sbjct: 442 CVEVRNMPLSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFSKAEGKELALGT 501
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
R G VEV + KA+ + SP + R ++G D + +
Sbjct: 502 TRFVRGSE-VEVLHLDESIFDKAVDSY-------SPEKERDRG---EDGMDDVRSSACIL 550
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
L LP + DI F D+ +++ I T S G A+V+FA ED+KA++ +
Sbjct: 551 LTDLPTFTKEMDIAKLFHDWKINDLFITSTKES-GSVQCMAYVQFARIEDAKASV-NTSL 608
Query: 235 TLGSRYIELFPSSHEEMDEA 254
+G++ + + E+ +A
Sbjct: 609 KIGNKPVTATAITEEKFAQA 628
>gi|195336616|ref|XP_002034931.1| GM14203 [Drosophila sechellia]
gi|194128024|gb|EDW50067.1| GM14203 [Drosophila sechellia]
Length = 987
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +R +PF A DIM FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 912 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAYES 971
Query: 232 DR 233
R
Sbjct: 972 RR 973
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T +R+ G+ + DI +F+ + + I I M +G TG A+VEF+ ++ A+
Sbjct: 357 TCYIRMSGMCQNTSYSDIRKYFQGLYIPHNGIKIMM-VNGSRTGVAYVEFSRVSSAQKAV 415
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++ R +++ P +E + A R
Sbjct: 416 QRNNTMFRDRLVQIVPVGDDEFELAEERA 444
>gi|194864880|ref|XP_001971153.1| GG14589 [Drosophila erecta]
gi|190652936|gb|EDV50179.1| GG14589 [Drosophila erecta]
Length = 995
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +R +PF A DI+ FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 920 VVAMRNVPFKAELKDILRFFGDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFES 979
Query: 232 DR 233
R
Sbjct: 980 RR 981
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 14/212 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+R+ G+ + + D+ ++F GL I + ++ V N TG A+ ALQR
Sbjct: 360 IRMSGMCQNTSYSDIRKYFQGLYIPHNGIKIMMV--NGSRTGVAYVEFSRVSSAQKALQR 417
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGS-PHRSIPRAKSHDEGKDSAVH---- 169
N R V++ E+ A + GS H + + + G A+
Sbjct: 418 NNTMFRDRLVQIAPVGDDEFELAEERANRQLHDGSRNHSNHNGGERGERGGGGAIPPPKP 477
Query: 170 -TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
T +L + LP + + DIM F D I ++ + + R AFV FA ++++A
Sbjct: 478 VTNVLYIEDLPQTTTEQDIMKMFSASYTIVD-ILLSPSPNNRRESVAFVLFAREAEAESA 536
Query: 229 MA-KDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ + +G R + + PSS E+M A + R
Sbjct: 537 LQDTTKHYIGFRQLRVSPSSEEDMQNAKEKQR 568
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T +R+ G+ + DI +F+ + + I I M +G TG A+VEF+ ++ A+
Sbjct: 357 TCYIRMSGMCQNTSYSDIRKYFQGLYIPHNGIKIMM-VNGSRTGVAYVEFSRVSSAQKAL 415
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++ R +++ P +E + A R
Sbjct: 416 QRNNTMFRDRLVQIAPVGDDEFELAEERA 444
>gi|24655341|ref|NP_647626.1| CG7879, isoform A [Drosophila melanogaster]
gi|24655346|ref|NP_728631.1| CG7879, isoform B [Drosophila melanogaster]
gi|7292101|gb|AAF47513.1| CG7879, isoform A [Drosophila melanogaster]
gi|7292102|gb|AAF47514.1| CG7879, isoform B [Drosophila melanogaster]
Length = 985
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +R +PF A DIM FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 910 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFES 969
Query: 232 DR 233
R
Sbjct: 970 RR 971
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T +R+ G+ + DI +F+ + + I I M +G TG A+VEF+ ++ A+
Sbjct: 353 TCYIRMSGMCQNTSYSDIRKYFQGMYIPHNGIKIMM-VNGSRTGVAYVEFSRVSSAQKAV 411
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++ R I++ P +E + A R
Sbjct: 412 QRNNTMFRDRLIQIVPVGDDEFEMAEERA 440
>gi|195490443|ref|XP_002093142.1| GE20949 [Drosophila yakuba]
gi|194179243|gb|EDW92854.1| GE20949 [Drosophila yakuba]
Length = 1002
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +R +PF A DI+ FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 927 VVAMRNVPFKAELKDILRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFES 986
Query: 232 DR 233
R
Sbjct: 987 RR 988
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 14/212 (6%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+R+ G+ + + D+ ++F GL I + ++ V N TG A+ A+QR
Sbjct: 356 IRMSGMCQNTSYSDIRKYFQGLYIPHNGIKIMMV--NGSRTGVAYVEFSRVSSAQKAVQR 413
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH----- 169
N R V++ E+ A ++ GS + S E V
Sbjct: 414 NNTMFRDRLVQIVPVGDDEFELAEERANRQLQDGSRNHSNHNGGERSERGGGGVVPAPKP 473
Query: 170 -TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
T +L + LP + + +IM F D I ++ + + R AFV FA ++ +A
Sbjct: 474 VTNVLYVEDLPQTTTEQEIMKMFSASYTVVD-ILLSPSPNNRRESVAFVLFAREGEADSA 532
Query: 229 MA-KDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ + +G R + + PSS EEM A + R
Sbjct: 533 LQDTSKHYIGFRQLRVSPSSEEEMQNAKEKQR 564
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T +R+ G+ + DI +F+ + + I I M +G TG A+VEF+ ++ A+
Sbjct: 353 TCYIRMSGMCQNTSYSDIRKYFQGLYIPHNGIKIMM-VNGSRTGVAYVEFSRVSSAQKAV 411
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++ R +++ P +E + A R
Sbjct: 412 QRNNTMFRDRLVQIVPVGDDEFELAEERA 440
>gi|20152135|gb|AAM11427.1| SD09402p [Drosophila melanogaster]
Length = 984
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +R +PF A DIM FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 909 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSAFES 968
Query: 232 DR 233
R
Sbjct: 969 RR 970
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T +R+ G+ + DI +F+ + + I I M +G TG A+VEF+ ++ A+
Sbjct: 353 TCYIRMSGMCQNTSYSDIRKYFQGMYIPHNGIKIMM-VNGSRTGVAYVEFSRVSSAQKAV 411
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++ R I++ P +E + A R
Sbjct: 412 QRNNTMFRDRLIQIVPVGDDEFEMAEERA 440
>gi|195586962|ref|XP_002083236.1| GD13466 [Drosophila simulans]
gi|194195245|gb|EDX08821.1| GD13466 [Drosophila simulans]
Length = 986
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFSGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
++ +R +PF A DIM FF D+ LS D I N +G+PTG+ V F + ++++A
Sbjct: 911 VVAMRNVPFKAELKDIMRFFSDYKLSPDDIIRRFNDEGKPTGDTRVAFESPSEARSA 967
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T +R+ G+ + DI +F+ + + I I M +G TG A+VEF+ ++ A+
Sbjct: 356 TCYIRMSGMCQNTSYSDIRKYFQGLYIPHNGIKIMM-VNGSRTGVAYVEFSRVSSAQKAV 414
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRG 258
++ R +++ P +E + A R
Sbjct: 415 QRNNTMFRDRLVQIVPVGDDEFELAEERA 443
>gi|380019192|ref|XP_003693498.1| PREDICTED: uncharacterized protein LOC100871735 [Apis florea]
Length = 879
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 22/191 (11%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
+ L LP E+D+A+ FH I D LF+ + K +G C + Y V FA
Sbjct: 549 CILLTDLPSFTKEMDIAKLFHDWKIND-LFI-TSTKESGSIQC-MAY---VQFA------ 596
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK-DSAVHTGILRLR 176
+E ++ K I N+ + + + H++ + + + +R
Sbjct: 597 -----RIEDAKASVNTSLK-IGNKPVTATAITEEKFAQAKRDHEQNSMNQTASSDCVIMR 650
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLPF DI+DFF D + IH+ ++ +G+P GE F EF A+++ A AK+ +
Sbjct: 651 GLPFQTIDRDILDFFSDIGIVPHRIHM-LHQNGKPAGECFCEFDTADEALRATAKNGLPF 709
Query: 237 GSRY--IELFP 245
G IEL P
Sbjct: 710 GKNVPTIELVP 720
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 44/216 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIV--DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
V +RGLPF + D+ +FF + IV + +H+N K GE FC + A +N
Sbjct: 646 CVIMRGLPFQTIDRDILDFFSDIGIVPHRIHMLHQNGKPAGECFCEFDTADEALRATAKN 705
Query: 116 RQNMGRRY--VEVF-RSKRQEYYKAIANEVSDV-------------RGGSPHRSIPRAKS 159
G+ +E+ R+K E + ++ + R P +PR +
Sbjct: 706 GLPFGKNVPTIELVPRAKMLETLGMVDPQIMETQQQHFPPLQEQRPRFSGPMNHLPRFGN 765
Query: 160 ---------------------HDEGKDSAVHT-----GILRLRGLPFSAGKDDIMDFFKD 193
H D V +L L +PF A ++I++FF D
Sbjct: 766 SGFGPRCPPGLMGIPRHMLGRHPGSMDYVVEGFGKPGCVLSLENVPFKADINEIIEFFGD 825
Query: 194 FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
F + +++ N G PTG+A V FA+ +++ A+
Sbjct: 826 FDVKRENVIRRYNERGMPTGDARVAFASPSEAQRAL 861
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ L +SA DI FF+ + E +HI G G+AF+ F+ ED++ AM
Sbjct: 4 IIRLQNLAWSANALDIRQFFRGLSIPEGGVHIV----GGELGDAFIAFSTDEDARQAMMH 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + I+L SS EM + + R
Sbjct: 60 DGGKIKEMKIKLLLSSRTEMQKVIEAAR 87
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 161 DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFA 220
+E K+S+ + +R +P SA +D+ F+ + +D + + ++ G G A+V+F+
Sbjct: 432 NENKNSSGGGHCVEVRNMPLSATYNDVRHAFQGIYIRKDGLKLINDNHGNRVGIAYVKFS 491
Query: 221 NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255
AE + A+ R GS +E+ D+A+
Sbjct: 492 KAEGKELALGTTRFVRGSE-VEVLHLDESIFDKAV 525
>gi|195127149|ref|XP_002008031.1| GI13280 [Drosophila mojavensis]
gi|193919640|gb|EDW18507.1| GI13280 [Drosophila mojavensis]
Length = 1101
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ +R +PF A DI+ FF D+ LS D I N +G+PTG+A V F + ++++A
Sbjct: 1026 VVAMRNVPFKADLKDILRFFSDYKLSPDDIIRRFNDEGKPTGDARVAFESPAEARSAFES 1085
Query: 232 DR 233
R
Sbjct: 1086 RR 1087
>gi|195376909|ref|XP_002047235.1| GJ12048 [Drosophila virilis]
gi|194154393|gb|EDW69577.1| GJ12048 [Drosophila virilis]
Length = 1091
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEVQVRLLLSSRAEMQKVIETAR 87
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-A 230
++ +R +PF A DI+ FF D+ LS D I N DG+PTG+A V F + ++++A +
Sbjct: 1016 VVAMRNVPFKADLKDILRFFSDYKLSPDDIIRRFNDDGKPTGDARVAFESPSEARSAFES 1075
Query: 231 KDRMTLGSRYIEL 243
K R + +R + L
Sbjct: 1076 KRRKQIFNRTVYL 1088
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%)
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
T +++ G+ S D+ +F + + I I ++G TG A+VEF+ ++
Sbjct: 439 AETCYIKISGMCPSTSYSDLRKYFAGLYIPHNGIKIVNGANGTRTGIAYVEFSRVSSAQK 498
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
A+ ++ R +++ P S EE ++A R +
Sbjct: 499 AVLRNNTMFRDRLVQIVPISDEEFEQADERAQ 530
>gi|198465484|ref|XP_001353649.2| GA20654 [Drosophila pseudoobscura pseudoobscura]
gi|198150179|gb|EAL31163.2| GA20654 [Drosophila pseudoobscura pseudoobscura]
Length = 1043
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-A 230
++ +R +PF A DI+ FF D+ LS D I N DG+PTG+ V F + ++++A +
Sbjct: 968 VVAMRNVPFKAELKDILRFFSDYKLSPDDIIRRFNDDGKPTGDTRVAFESPAEARSAYES 1027
Query: 231 KDRMTLGSRYIEL 243
+ R + SR + L
Sbjct: 1028 RRRKQIFSRTVHL 1040
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 10/206 (4%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V++ G+ + + D+ ++F GL I + ++ V N TG A+ ALQR
Sbjct: 393 VKISGMCQNTSYSDLRKYFQGLYIPHNGIKIMTV--NGSRTGVAYIEFSRVSSAQKALQR 450
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
N R V++ E+ +A E S + P + + + D G S +L
Sbjct: 451 NNTMFRDRQVQIVPIGDAEFEQA--EEKSRSQQHQPPQDVVGRNAGDRGGGSLPSFNVLY 508
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDR 233
+ LP + DIM F D I + + + R AFV FA ++ +A+ R
Sbjct: 509 VEDLPQLTTEQDIMKMFSATCTIVD-ILLAPSPNNRREFVAFVLFARETEALSALEDTSR 567
Query: 234 MTLGSRYIELFPSSHEEMDEALSRGR 259
+G R + + PSS EM +A + R
Sbjct: 568 HYIGFRQLRVRPSSQAEMLQAKEKQR 593
>gi|28279187|gb|AAH45946.1| Zgc:56148 [Danio rerio]
Length = 314
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 89/233 (38%), Gaps = 43/233 (18%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL+GL D+ FF GL I D VH EAF + A+ R+
Sbjct: 4 VIRLQGLRVTAGSEDIRNFFTGLRIPDG-GVHIIGGELEEAFIIFASDEDARRAMSRSGG 62
Query: 118 NMGRRYVEVFRSKRQEY------------------YKAIANEVS---------------- 143
+ V +F S + E YK A S
Sbjct: 63 CIKGSTVNLFLSSKSEMQSVLEESTRRSELKNRAMYKEPAKRASAEQGPLPFSKDTRPDV 122
Query: 144 ------DVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 197
++RG + A+ +G L+L G+PFSA KD++ +FF L
Sbjct: 123 RRADHPEMRGRPASSTFSEARRQRDGDAPERAEVYLKLTGMPFSATKDNVHNFFAG--LK 180
Query: 198 EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
D I N G +G + V F ED+ + +DR +GSRYI++ + EE
Sbjct: 181 VDDILFLKNPRGMFSGNSMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEE 233
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 28 PSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF 87
P G P SS+F G + ++L G+PF T+ +V FF GL + D+LF
Sbjct: 128 PEMRGRPASSTFSEARRQRDGDAPERAEV-YLKLTGMPFSATKDNVHNFFAGLKVDDILF 186
Query: 88 VHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 136
+ F+G + L+R+RQ MG RY+++ R +E+ K
Sbjct: 187 LKNPRGMFSGNSMVRFTTKEDAIEGLKRDRQYMGSRYIQITRCTEEEWLK 236
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GL +AG +DI +FF + + +HI G EAF+ FA+ ED++ AM++
Sbjct: 4 VIRLQGLRVTAGSEDIRNFFTGLRIPDGGVHII----GGELEEAFIIFASDEDARRAMSR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
+ + LF SS EM L
Sbjct: 60 SGGCIKGSTVNLFLSSKSEMQSVL 83
>gi|195175076|ref|XP_002028289.1| GL16722 [Drosophila persimilis]
gi|194117421|gb|EDW39464.1| GL16722 [Drosophila persimilis]
Length = 1044
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP++A DI +FF + E +HI G G+AF+ F+ ED++ AM K
Sbjct: 4 IIRLQNLPWTANARDIRNFFTGLSIPEGGVHII----GGEMGDAFIAFSTDEDARCAMLK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR L + L SS EM + + R
Sbjct: 60 DREKLMEIQVRLLLSSRAEMQKVIETAR 87
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-A 230
++ +R +PF A DI+ FF D+ LS D I N DG+PTG+ V F + ++++A +
Sbjct: 969 VVAMRNVPFKAELKDILRFFSDYKLSPDDIIRRFNDDGKPTGDTRVAFESPAEARSAYES 1028
Query: 231 KDRMTLGSRYIEL 243
+ R + SR + L
Sbjct: 1029 RRRKQIFSRTVHL 1041
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 10/206 (4%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDI----VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V++ G+ + + D+ ++F GL I + ++ V N TG A+ ALQR
Sbjct: 393 VKISGMCQNTSYSDLRKYFQGLYIPHNGIKIMTV--NGSRTGVAYIEFSRVSSAQKALQR 450
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
N R V++ E+ +A +E S + P + + + D G S +L
Sbjct: 451 NNTMFRDRQVQIVPIGDAEFEQA--DEKSRSQQHQPPQDVVGRNAGDRGGGSLPSFNVLY 508
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDR 233
+ LP + DIM F D I + + + R AFV FA ++ +A+ R
Sbjct: 509 VEDLPQLTTEQDIMKMFSATCTIVD-ILLAPSPNNRREFVAFVLFARETEALSALEDTSR 567
Query: 234 MTLGSRYIELFPSSHEEMDEALSRGR 259
+G R + + PSS EM +A + R
Sbjct: 568 HYIGFRQLRVRPSSQAEMLQAKEKQR 593
>gi|156402343|ref|XP_001639550.1| predicted protein [Nematostella vectensis]
gi|156226679|gb|EDO47487.1| predicted protein [Nematostella vectensis]
Length = 862
Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 22/235 (9%)
Query: 20 RQRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP--VVRLRGLPFDCTEVDVAEFF 77
R+ ID + G+ P P +P P ++RGLPF + + EFF
Sbjct: 219 REETIDASKNPDGSSDVDEPQETPQP-----DKPKPTTPWTCKMRGLPFKAKDKHILEFF 273
Query: 78 HGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 136
L V + FV +K + +G AF ++ AL+RN+ + RY+E+F+ +++
Sbjct: 274 SPLKPVAIRFVMNKKGQPSGCAFVDFSSKSDLEKALKRNKDYLQGRYIELFKDTNRDF-- 331
Query: 137 AIANEVSDVRGGSPHRSIPRA---KSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193
+ + G +S R K DE ++ +G L LR L +S ++DI F+
Sbjct: 332 ------DNNKQGDGEKSWMRKLQEKGDDEEEEPIGESGRLFLRNLAYSCSEEDIQHLFEK 385
Query: 194 F-VLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELFPS 246
F LSE ++ + +++ + G FV F E + KA D R + + P+
Sbjct: 386 FGPLSEVNLPLDKHTN-KTIGIGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPA 439
Score = 60.8 bits (146), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
++RGLPF A I++FF L +I MN G+P+G AFV+F++ D + A+ +++
Sbjct: 256 KMRGLPFKAKDKHILEFFSP--LKPVAIRFVMNKKGQPSGCAFVDFSSKSDLEKALKRNK 313
Query: 234 MTLGSRYIELFPSSHEEMD 252
L RYIELF ++ + D
Sbjct: 314 DYLQGRYIELFKDTNRDFD 332
>gi|350036612|dbj|GAA34386.1| RNA-binding protein 12 [Clonorchis sinensis]
Length = 964
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP SA +I FF + E +HI +DG +AF+ FA ED++ AM
Sbjct: 4 IIRLQNLPMSANASNIRRFFGGLAIPEGGVHIVGGTDG----DAFIAFATDEDARKAMLL 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR + + LF SS EM + R
Sbjct: 60 DRQAINGAPVRLFLSSKTEMQSVIESAR 87
>gi|124802582|ref|XP_001347519.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|23495101|gb|AAN35432.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 160
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDSK-AAM 229
L+LRGLPF A +++I +FF+DF L++ + IHI +PTG A+V F + E+++ A
Sbjct: 57 LKLRGLPFDASEEEIKNFFRDFQLTKQAYPIHIIKGIKNKPTGHAYVYFDDEEEARNACQ 116
Query: 230 AKDRMTLGSRYIELF 244
A +R + R++E++
Sbjct: 117 AMNRKYIRDRFVEIY 131
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 27 GPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVL 86
G SF +P + N Y + + P ++LRGLPFD +E ++ FF +
Sbjct: 26 GDSFSSSPQKIMSVRNFS-EYINIEEKINLPRLKLRGLPFDASEEEIKNFFRDFQLTKQA 84
Query: 87 F-VH----KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128
+ +H NK TG A+ + A Q NR+ + R+VE+++
Sbjct: 85 YPIHIIKGIKNKPTGHAYVYFDDEEEARNACQAMNRKYIRDRFVEIYQ 132
>gi|156082065|ref|XP_001608525.1| RNA binding protein [Plasmodium vivax Sal-1]
gi|148801096|gb|EDL42501.1| RNA binding protein, putative [Plasmodium vivax]
Length = 181
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 149 SPHRSIPRAKS-HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITM 205
SP +S+ R S + ++ V+ L+LRGLPF A +++I FFK+F L++ IHI
Sbjct: 53 SPTQSVRRFFSDYQHVQEEKVNLPRLKLRGLPFDASEEEIKTFFKNFQLAKVGYPIHIIR 112
Query: 206 NSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELF 244
+PTG+A V F + E++ KA +R L +RYIE++
Sbjct: 113 GVKNKPTGQAHVYFDDEEEARKACETLNRKFLRNRYIEIY 152
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VH----KNNKFTGEAFCVLGYPLQVDF 110
P ++LRGLPFD +E ++ FF + V + +H NK TG+A +
Sbjct: 75 LPRLKLRGLPFDASEEEIKTFFKNFQLAKVGYPIHIIRGVKNKPTGQAHVYFDDEEEARK 134
Query: 111 ALQR-NRQNMGRRYVEVF 127
A + NR+ + RY+E++
Sbjct: 135 ACETLNRKFLRNRYIEIY 152
>gi|390332535|ref|XP_001184447.2| PREDICTED: probable RNA-binding protein 19-like [Strongylocentrotus
purpuratus]
Length = 513
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 136 KAIANEVSDVRGGSPHRSIPRAKSHDEG------KDSAVHTG--ILRLRGLPFSAGKDDI 187
KA+ EV +V + R + + KD G +++RG+PF+ ++D+
Sbjct: 329 KAVQTEVKEVPNVKASPTTERVRKNKVKLMRSVRKDEKYERGDFTIKMRGVPFNVKEEDV 388
Query: 188 MDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244
+ FF LS +I +N G+ TG FVEFA+ +D AM ++R +G RY+ELF
Sbjct: 389 VKFFAP--LSMKTIRAPLNEKGQRTGVIFVEFASEDDITKAMKRNREYMGRRYVELF 443
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 21 QRLIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFP----VVRLRGLPFDCTEVDVAEF 76
Q + + P+ +P + N V + + +++RG+PF+ E DV +F
Sbjct: 332 QTEVKEVPNVKASPTTERVRKNKVKLMRSVRKDEKYERGDFTIKMRGVPFNVKEEDVVKF 391
Query: 77 FHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
F L + + +++ + TG F + A++RNR+ MGRRYVE+FR
Sbjct: 392 FAPLSMKTIRAPLNEKGQRTGVIFVEFASEDDITKAMKRNREYMGRRYVELFR 444
>gi|221054023|ref|XP_002261759.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193808219|emb|CAQ38922.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 163
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 12/109 (11%)
Query: 148 GSPHR---SIPRAK------SHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198
G+P R IP K + ++ V+ L+LRGLPF G+++I FFK+F L++
Sbjct: 26 GTPLRELQKIPTQKFRRFFSEYQHVQEEKVNLPRLKLRGLPFDVGEEEIKSFFKNFQLAK 85
Query: 199 DS--IHITMNSDGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIELF 244
IHI +PTG+A V F + E++ KA +R L +RYIE++
Sbjct: 86 VGYPIHIIRGVKNKPTGQAHVYFDDEEEARKACETLNRKFLRNRYIEIY 134
>gi|74199513|dbj|BAE41443.1| unnamed protein product [Mus musculus]
Length = 618
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + + D+ F D+ + + FV+K+ + T AF + + AL ++
Sbjct: 69 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 128
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R+E + I R S + P K EG + +
Sbjct: 129 TVLQYRPVLIDPVSRKEMVRIIEC-YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKLCI 187
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED IH+ + G GEA V F + E + A +R
Sbjct: 188 YIRNLPFDVTKGEVQKFFADFSLVEDDIHLLCDDKGVGLGEALVRFKSEEQAMKAERLNR 247
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 248 QRFLGIEVLLRLISEEQMQE 267
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 171 GILR--LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
GI+R + LPF A ++I+DFF + + DS+ I N +G P GEA V N ++ +A
Sbjct: 540 GIIRVMISNLPFKANANEILDFFHGYKVIPDSVSIQYNEEGLPLGEAIVSMTNYNEALSA 599
Query: 229 M 229
+
Sbjct: 600 V 600
>gi|49619013|gb|AAT68091.1| KIAA0682-like [Danio rerio]
Length = 927
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 14/227 (6%)
Query: 23 LIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDI 82
++ S Y + +S + PA +P V+LRG PF+ E V EF L
Sbjct: 260 IVQHADSAYESGEKTSSQKSTRPAI----EPTTEFTVKLRGAPFNVKEQQVKEFMMPLKP 315
Query: 83 VDVLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE 141
V + F ++ + +G + L +V+ AL+ ++ MG RY+EVFR+ N+
Sbjct: 316 VAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDKDYMGGRYIEVFRANN------FKND 369
Query: 142 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF-KDFVLSEDS 200
+ ++ R DE ++ +G L +R +P++ ++D+ + F K LSE
Sbjct: 370 RRSAKRSEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVL 429
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246
I + +P G AFV + E++ +A+A+ D T R + + S
Sbjct: 430 FPID-SLTKKPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMAS 475
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
++LRG PF+ + + +F L +I NSDGR +G +V+ + + + A+ D
Sbjct: 292 VKLRGAPFNVKEQQVKEFM--MPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLD 349
Query: 233 RMTLGSRYIELFPSSH 248
+ +G RYIE+F +++
Sbjct: 350 KDYMGGRYIEVFRANN 365
>gi|428185555|gb|EKX54407.1| hypothetical protein GUITHDRAFT_99887 [Guillardia theta CCMP2712]
Length = 1076
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 176 RGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
RGLPFS+ +DDI+ FF + L + I +++ RP+GEA V+ + ED AA++ +R
Sbjct: 693 RGLPFSSTEDDIVTFFGECKNLEAGDVSILLDARQRPSGEATVKLRSVEDLHAALSCNRN 752
Query: 235 TLGSRYIELF 244
+G RY+E+F
Sbjct: 753 MMGERYVEVF 762
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 54 PPFPV----VRLRGLPFDCTEVDVAEFF---HGLDIVDV-LFVHKNNKFTGEAFCVLGYP 105
P FP V RGLPF TE D+ FF L+ DV + + + +GEA L
Sbjct: 681 PVFPSSSYEVTCRGLPFSSTEDDIVTFFGECKNLEAGDVSILLDARQRPSGEATVKLRSV 740
Query: 106 LQVDFALQRNRQNMGRRYVEVFRSKRQ 132
+ AL NR MG RYVEVF +++
Sbjct: 741 EDLHAALSCNRNMMGERYVEVFEHRKR 767
>gi|402581245|gb|EJW75193.1| hypothetical protein WUBG_13897 [Wuchereria bancrofti]
Length = 179
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+ I+RL+ LP SA DI FF + + ++HI G P G+AF+ FA ED++ AM
Sbjct: 2 SWIIRLQRLPLSANAADIRSFFAGLRIPDGAVHIV----GGPDGDAFIGFATDEDARQAM 57
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + + + L SS EMD +++ R
Sbjct: 58 RFDNRRIHDQRVRLLLSSRVEMDAVIAKAR 87
>gi|312073187|ref|XP_003139407.1| hypothetical protein LOAG_03822 [Loa loa]
Length = 180
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP SA DI FF + + ++HI G P G+AF+ FA ED++ AM
Sbjct: 4 IIRLQRLPLSANAADIRSFFAGLRIPDGAVHIV----GGPDGDAFIGFATDEDARQAMRF 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + + + L SS EMD +++ R
Sbjct: 60 DNRRIHDQRVRLLLSSRVEMDAVIAKAR 87
>gi|17510849|ref|NP_492671.1| Protein Y106G6D.7 [Caenorhabditis elegans]
gi|5824657|emb|CAA20980.2| Protein Y106G6D.7 [Caenorhabditis elegans]
Length = 948
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP +AG D+ FF + + ++HI G GE FV F++ +D++ AM K
Sbjct: 4 IIRLKNLPMTAGASDVRTFFTGLKIPDGAVHII----GGDEGEVFVGFSSDDDARLAMTK 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALS 256
DR+ + + LF SS E + ++
Sbjct: 60 DRLMIHGAEVRLFLSSKSEQNSVIA 84
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS-KAAMA 230
+L G P +D+++FF D+ +SI I DG TGE + N E++ +A+M
Sbjct: 873 VLSCNGFPKDVTLEDVVEFFNDYEPDRNSIRIRRGDDGVMTGECMLACQNQENARRASMD 932
Query: 231 KDRMTLGSRYIEL 243
D L + I +
Sbjct: 933 LDGQKLRNSVISV 945
>gi|432101444|gb|ELK29626.1| Cysteine desulfurase, mitochondrial [Myotis davidii]
Length = 815
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 10/196 (5%)
Query: 63 GLPFDCTEVDVAEFFHGLDIV-DVLFVH--KNNKFTGEAFCVLGYPLQVDFALQRNRQNM 119
GL + V LDIV D +++ N K TGE F AL R++Q M
Sbjct: 379 GLTWPLLLVKKIHLLFYLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYM 438
Query: 120 GRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKS--HDEGKDSAVHTGILRLRG 177
G R+++V + K + ++ +R + + + + + EG S+ +
Sbjct: 439 GNRFIQVHPITK----KGMLEKIDMIRKRLQNFNYDQREMMLNPEGDVSSTKV-CAHITN 493
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLG 237
+PFS K D++ F + + E+++H+ ++++G+ G+A V+F N +D++ + R L
Sbjct: 494 IPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLN 553
Query: 238 SRYIELFPSSHEEMDE 253
R + + E+M E
Sbjct: 554 GREAFVHVVTLEDMRE 569
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 190 FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 249
F+ D V EDSI+I +G+ TGE FVEF N D KAA+ + + +G+R+I++ P + +
Sbjct: 394 FYLDIV--EDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK 451
Query: 250 EMDEAL 255
M E +
Sbjct: 452 GMLEKI 457
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 740 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 799
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 800 LNDR-PIGSRKVKL 812
>gi|256073174|ref|XP_002572907.1| rna-binding protein 12 (sh3/ww domain anchor protein in the
nucleus) (swan) [Schistosoma mansoni]
gi|350645108|emb|CCD60169.1| rna-binding protein 12 (sh3/ww domain anchor protein in the
nucleus) (swan), putative [Schistosoma mansoni]
Length = 923
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP SA +I FF + E +HI G G+AF+ FA ED++ AM
Sbjct: 4 IIRLQNLPISANASNIRRFFSGLSIPEGGVHIV----GGTEGDAFIAFATDEDARKAMLL 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR T+ + LF SS EM + +
Sbjct: 60 DRQTINGASVRLFLSSKAEMQSIIESAK 87
>gi|393908967|gb|EJD75265.1| hypothetical protein LOAG_17558 [Loa loa]
Length = 972
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+ I+RL+ LP SA DI FF + + ++HI G P G+AF+ FA ED++ AM
Sbjct: 2 SWIIRLQRLPLSANAADIRSFFAGLRIPDGAVHIV----GGPDGDAFIGFATDEDARQAM 57
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + + + L SS EMD +++ R
Sbjct: 58 RFDNRRIHDQRVRLLLSSRVEMDAVIAKAR 87
>gi|76155549|gb|AAX26841.2| SJCHGC06966 protein [Schistosoma japonicum]
Length = 106
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 15/86 (17%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKD-------FVLSEDS--------IHITMNSDGRPTGEAF 216
++R+RGLPFSA DDI++FFK F +S D I+ +GR GEAF
Sbjct: 9 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVSTDCTIRGGKRGIYFPQGPNGRSNGEAF 68
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIE 242
+E + +D + AMA +G RYIE
Sbjct: 69 IELDSKDDKEKAMAHHNEHMGRRYIE 94
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK------------------NNKFTGEAF 99
VVR+RGLPF D+ FF G + V F N + GEAF
Sbjct: 9 VVRIRGLPFSANADDIINFFKGTLVFRVFFNVSTDCTIRGGKRGIYFPQGPNGRSNGEAF 68
Query: 100 CVLGYPLQVDFALQRNRQNMGRRYVE 125
L + A+ + ++MGRRY+E
Sbjct: 69 IELDSKDDKEKAMAHHNEHMGRRYIE 94
>gi|156401533|ref|XP_001639345.1| predicted protein [Nematostella vectensis]
gi|156226473|gb|EDO47282.1| predicted protein [Nematostella vectensis]
Length = 75
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+++++GLPF A DI FF L E IH+ N DG+ +G +F F +D++ AM +
Sbjct: 4 VIKMKGLPFEATSRDIQMFFDGLSLREKDIHLAANKDGKASGISFAVFNVDDDARKAMYR 63
Query: 232 DRMTLGSRYIEL 243
+G RYIEL
Sbjct: 64 TGKYMGKRYIEL 75
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI--VDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
V++++GLPF+ T D+ FF GL + D+ L +K+ K +G +F V A+ R
Sbjct: 4 VIKMKGLPFEATSRDIQMFFDGLSLREKDIHLAANKDGKASGISFAVFNVDDDARKAMYR 63
Query: 115 NRQNMGRRYVEV 126
+ MG+RY+E+
Sbjct: 64 TGKYMGKRYIEL 75
>gi|60416093|gb|AAH90711.1| Rbm19 protein, partial [Danio rerio]
Length = 802
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 14/227 (6%)
Query: 23 LIDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDI 82
++ S Y + +S + PA +P V+LRG PF+ E V EF L
Sbjct: 260 IVQHADSAYESGEKTSSQKSTRPAI----EPTTEFTVKLRGAPFNVKEQQVKEFMMPLKP 315
Query: 83 VDVLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANE 141
V + F ++ + +G + L +V+ AL+ ++ MG RY+EVFR+ N+
Sbjct: 316 VAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDKDYMGGRYIEVFRANN------FKND 369
Query: 142 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF-KDFVLSEDS 200
+ ++ R DE ++ +G L +R +P++ ++D+ + F K LSE
Sbjct: 370 RRSAKRSEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKEVFSKHGPLSEVL 429
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246
I + +P G AFV + E++ +A+A+ D T R + + S
Sbjct: 430 FPID-SLTKKPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMAS 475
>gi|7739449|gb|AAF68852.1|AF132364_1 hnRNP 2H9E [Homo sapiens]
gi|7739439|gb|AAF68846.1| hnRNP 2H9E [Homo sapiens]
Length = 139
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 52 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 109
Query: 225 SKAAMAKDRMTL 236
+ AAM+KD+ +
Sbjct: 110 AVAAMSKDKNNM 121
>gi|313244026|emb|CBY14896.1| unnamed protein product [Oikopleura dioica]
Length = 407
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D+ + I+++ GLP+ + +I +FF L++ + I + DGR TG AF F + +D
Sbjct: 259 DNCLFDKIVKMSGLPYRITRGEIREFFSPIDLTD--VRIEIGKDGRTTGNAFAAFFSDDD 316
Query: 225 SKAAMAKDRMTLGSRYIELFPSS 247
AM K++ LG+RY+EL+ S
Sbjct: 317 VWNAMQKNKQMLGTRYVELYNKS 339
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
+V++ GLP+ T ++ EFF +D+ DV + + K+ + TG AF V A+Q+N+
Sbjct: 266 IVKMSGLPYRITRGEIREFFSPIDLTDVRIEIGKDGRTTGNAFAAFFSDDDVWNAMQKNK 325
Query: 117 QNMGRRYVEVFR 128
Q +G RYVE++
Sbjct: 326 QMLGTRYVELYN 337
>gi|7739447|gb|AAF68851.1|AF132363_2 hnRNP 2H9D [Homo sapiens]
gi|7739438|gb|AAF68845.1| hnRNP 2H9D [Homo sapiens]
gi|119574674|gb|EAW54289.1| heterogeneous nuclear ribonucleoprotein H3 (2H9), isoform CRA_f
[Homo sapiens]
Length = 145
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 58 SGFHGGHFVHMRGLPFRATENDIANFFSP--LNPIRVHIDIGADGRATGEADVEFVTHED 115
Query: 225 SKAAMAKDRMTL 236
+ AAM+KD+ +
Sbjct: 116 AVAAMSKDKNNM 127
>gi|170596136|ref|XP_001902655.1| swan [Brugia malayi]
gi|158589551|gb|EDP28496.1| swan, putative [Brugia malayi]
Length = 179
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+ I+RL+ LP SA DI FF + + ++HI G P G+AF+ FA ED++ AM
Sbjct: 2 SWIIRLQRLPLSANAADIRTFFAGLRIPDGAVHIV----GGPDGDAFIGFATDEDARQAM 57
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + + + L SS EMD +++ R
Sbjct: 58 RFDNRRIHDQRVRLLLSSRVEMDAVIAKAR 87
>gi|159164096|pdb|2DGW|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
Rna-Binding Protein 19
Length = 91
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+ HT ++LRG PF+ + ++M+F L +I I N+ G TG FV+F+N E+
Sbjct: 8 TTCHT--VKLRGAPFNVTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFVDFSNEEEV 63
Query: 226 KAAMAKDRMTLGSRYIELF 244
K A+ +R +G RYIE+F
Sbjct: 64 KQALKCNREYMGGRYIEVF 82
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQR 114
V+LRG PF+ TE +V EF L V + V H N TG F +V AL+
Sbjct: 12 TVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNK--TGYIFVDFSNEEEVKQALKC 69
Query: 115 NRQNMGRRYVEVFRSK 130
NR+ MG RY+EVFR K
Sbjct: 70 NREYMGGRYIEVFREK 85
>gi|389582716|dbj|GAB65453.1| RNA binding protein [Plasmodium cynomolgi strain B]
Length = 130
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDS--IHITMNSDGRPTGEAFVEFANAEDS-KAAM 229
L+LRGLPF A +++I FFK+F L++ IHI +PTG+A V F + E++ KA
Sbjct: 27 LKLRGLPFDASEEEIKTFFKNFQLAKVGYPIHIIRGVKNKPTGQAHVYFDDEEEARKACE 86
Query: 230 AKDRMTLGSRYIELF 244
+R L +RYIE++
Sbjct: 87 TLNRKFLRNRYIEIY 101
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 24 IDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV 83
+ +G S G P + + P ++LRGLPFD +E ++ FF +
Sbjct: 5 LQKGKSLIGKPCK-------------LEEKVNLPRLKLRGLPFDASEEEIKTFFKNFQLA 51
Query: 84 DVLF-VH----KNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVF 127
V + +H NK TG+A + A + NR+ + RY+E++
Sbjct: 52 KVGYPIHIIRGVKNKPTGQAHVYFDDEEEARKACETLNRKFLRNRYIEIY 101
>gi|328909179|gb|AEB61257.1| heterogeneous nuclear ribonucleoprotein F-like protein, partial
[Equus caballus]
Length = 113
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 184 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 243
++DI +FF L+ +HI + DGR TGEA VEFA E++ AAM+KDR + RYIEL
Sbjct: 1 ENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL 58
Query: 244 FPSS 247
F +S
Sbjct: 59 FLNS 62
>gi|226482640|emb|CAX73919.1| RNA-binding protein 12 [Schistosoma japonicum]
Length = 922
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP SA +I FF + E +HI G G+AF+ FA ED++ AM
Sbjct: 4 IIRLQNLPISANAANIRRFFSGLSIPEGGVHIV----GGTEGDAFIAFATDEDARKAMLL 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR T+ + LF SS EM + +
Sbjct: 60 DRQTINGASVRLFLSSKAEMQSIIESAK 87
>gi|76154254|gb|AAX25744.2| SJCHGC00921 protein [Schistosoma japonicum]
Length = 805
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP SA +I FF + E +HI G G+AF+ FA ED++ AM
Sbjct: 4 IIRLQNLPISANAANIRRFFSGLSIPEGGVHIV----GGTEGDAFIAFATDEDARKAMLL 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
DR T+ + LF SS EM + +
Sbjct: 60 DRQTINGASVRLFLSSKAEMQSIIESAK 87
>gi|226533389|ref|NP_001034357.2| RNA binding motif protein 19 [Gallus gallus]
Length = 957
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+LRG P + TE + EFF L + + + + K TG F L +V AL+R ++
Sbjct: 309 VKLRGAPLNVTEQKIREFFSPLKPLAIRMGKNTQGKSTGFIFVDLKSEAEVQKALKRKKE 368
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
+G +YVEV R + A V+ P + R K DE ++ +G L +R
Sbjct: 369 YIGGQYVEVSRCE-----NAPKETVTAKTDDQPWQ---RMKRDDEEEEDLSESGRLFVRN 420
Query: 178 LPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRM 234
LPF++ ++D+ F + LSE IH ++ +P G AF+ + E + A A+ D
Sbjct: 421 LPFTSTEEDLEKIFSKYGPLSE--IHFPIDRLTKKPKGFAFITYMIPEHAVKAYAEMDGQ 478
Query: 235 TLGSRYIELFPSSHEEM 251
R + L PS+ +++
Sbjct: 479 VFQGRMMHLLPSTIKKL 495
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
S HT ++LRG P + + I +FF L +I + N+ G+ TG FV+ + +
Sbjct: 304 STPHT--VKLRGAPLNVTEQKIREFFSP--LKPLAIRMGKNTQGKSTGFIFVDLKSEAEV 359
Query: 226 KAAMAKDRMTLGSRYIEL 243
+ A+ + + +G +Y+E+
Sbjct: 360 QKALKRKKEYIGGQYVEV 377
>gi|268566957|ref|XP_002639856.1| Hypothetical protein CBG12209 [Caenorhabditis briggsae]
Length = 965
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP +A D+ FF + + ++HI G GE FV FA+ ED++ AMA+
Sbjct: 4 IIRLKNLPMTAAAADVRTFFSGLKIPDGAVHII----GGDEGEVFVGFASDEDARLAMAR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALS 256
DR + I LF SS E ++
Sbjct: 60 DRAKIHGAEIRLFLSSKSEQSSVIA 84
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
++RL+ LP DV FF GL I D VH GE F A+ R+R
Sbjct: 4 IIRLKNLPMTAAAADVRTFFSGLKIPDGA-VHIIGGDEGEVFVGFASDEDARLAMARDRA 62
Query: 118 NMGRRYVEVFRSKRQEYYKAIA 139
+ + +F S + E IA
Sbjct: 63 KIHGAEIRLFLSSKSEQSSVIA 84
>gi|70945353|ref|XP_742505.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521527|emb|CAH76146.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 139
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLS--EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
++LRGLPF +D+I +FF F LS ++ IHI +PTG A+V F ++E+++ A
Sbjct: 36 IKLRGLPFDVSEDEIKNFFSSFKLSNQKNPIHIIKGIKDKPTGHAYVYFDDSEEARNACQ 95
Query: 231 K-DRMTLGSRYIELF 244
+R L +RYIE++
Sbjct: 96 HLNRKFLRNRYIEIY 110
>gi|190337757|gb|AAI63877.1| RNA binding motif protein 19 [Danio rerio]
Length = 926
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 14/226 (6%)
Query: 24 IDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV 83
+ S Y + +S + PA +P V+LRG PF+ E V EF L V
Sbjct: 260 VQHTDSAYESGEKTSSQKSTRPAI----EPTTEFTVKLRGAPFNVKEQQVKEFMMPLKPV 315
Query: 84 DVLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV 142
+ F ++ + +G + L +V+ AL+ ++ MG RY+EVFR+ N+
Sbjct: 316 AIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDKDYMGGRYIEVFRANN------FKNDR 369
Query: 143 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF-KDFVLSEDSI 201
+ ++ R DE ++ +G L +R +P++ ++D+ + F K LSE
Sbjct: 370 RSAKRSEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKEVFSKHGPLSEVLF 429
Query: 202 HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246
I + +P G AFV + E++ +A+A+ D T R + + S
Sbjct: 430 PIDSLTK-KPKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMAS 474
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++LRG PF+ + + +F L +I NSDGR +G +V+ + + + A+
Sbjct: 290 TVKLRGAPFNVKEQQVKEFM--MPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRL 347
Query: 232 DRMTLGSRYIELFPSSH 248
D+ +G RYIE+F +++
Sbjct: 348 DKDYMGGRYIEVFRANN 364
>gi|355694925|gb|AER99832.1| heteroproteinous nuclear ribonucleoprotein H3 [Mustela putorius
furo]
Length = 108
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 166 SAVHTG-ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
S H G + +RGLPF A ++DI +FF L+ +HI + +DGR TGEA VEF ED
Sbjct: 40 SGFHGGHFVHMRGLPFRATENDIANFFS--PLNPIRVHIDIGADGRATGEADVEFVTHED 97
Query: 225 SKAAMAKDR 233
+ AAM+KD+
Sbjct: 98 AVAAMSKDK 106
>gi|401395936|ref|XP_003879715.1| putative RRM domain-containing protein [Neospora caninum Liverpool]
gi|325114122|emb|CBZ49680.1| putative RRM domain-containing protein [Neospora caninum Liverpool]
Length = 246
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLS---EDSIHITMNSDGRPTGEAFVEFANAEDS-K 226
LRLRGL + A DDI FF+ + L+ E++I + DGRPTG A V F +++ +
Sbjct: 139 ATLRLRGLSYRATTDDIAQFFEGYSLAGPPEEAIQLHRRMDGRPTGWASVYFETEQEARR 198
Query: 227 AAMAKDRMTLGSRYIELF 244
A K R L RYIE+F
Sbjct: 199 AKQDKHRSYLHGRYIEIF 216
>gi|321463278|gb|EFX74295.1| hypothetical protein DAPPUDRAFT_307392 [Daphnia pulex]
Length = 929
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP+SA DI FF + E +HI G G+AF+ F+ ED++ MA
Sbjct: 4 IIRLQNLPWSANAADIRQFFHGLSIPEGGVHIV----GGQLGDAFIAFSTDEDARQGMAS 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D L ++L+ SS EM + + R
Sbjct: 60 DGGMLKDSRVKLYLSSRTEMQKIIEETR 87
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+ GLP SA + DI DFF D + I I + + P G A+ +FA+ ++++ A+ K+
Sbjct: 641 ITGLPPSALERDIGDFFSDVGVIPQIIEIVYDEERMPVGNAYCQFASMQEAERALDKNGG 700
Query: 235 TLGSRYIEL 243
+G + +
Sbjct: 701 FMGGHTVSV 709
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++ L +P A DI+DFF+ F ++E + +G PTG+A V F + ++++ A+
Sbjct: 854 VIALSNVPHKAIIADILDFFRGFQVNEKCVIRRFGPNGEPTGDARVAFLSPDEAELAV-- 911
Query: 232 DRMTLGSRYI 241
TL + Y+
Sbjct: 912 --RTLQNEYL 919
>gi|38707995|ref|NP_944597.1| probable RNA-binding protein 19 [Danio rerio]
gi|32450902|gb|AAP82506.1| nil per os [Danio rerio]
Length = 926
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 14/226 (6%)
Query: 24 IDQGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV 83
+ S Y + +S + PA +P V+LRG PF+ E V EF L V
Sbjct: 260 VQHTDSAYESGEKTSSQKSTRPAI----EPTTEFTVKLRGAPFNVKEQQVKEFMMPLKPV 315
Query: 84 DVLFVHKNN-KFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV 142
+ F ++ + +G + L +V+ AL+ ++ MG RY+EVFR+ N+
Sbjct: 316 AIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDKDYMGGRYIEVFRANN------FKNDR 369
Query: 143 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFF-KDFVLSEDSI 201
+ ++ R DE ++ +G L +R +P++ ++D+ + F K LSE
Sbjct: 370 RSSKRSEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTCTEEDLKEVFSKHGPLSEVLF 429
Query: 202 HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246
I + +P G AFV + E++ +A+A+ D T R + + S
Sbjct: 430 PID-SLTKKPKGFAFVTYMIPENAVSALAQLDGQTFQGRVLHVMAS 474
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++LRG PF+ + + +F L +I NSDGR +G +V+ + + + A+
Sbjct: 290 TVKLRGAPFNVKEQQVKEFM--MPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRL 347
Query: 232 DRMTLGSRYIELFPSSH 248
D+ +G RYIE+F +++
Sbjct: 348 DKDYMGGRYIEVFRANN 364
>gi|32449726|gb|AAH54081.1| Rbm12b protein, partial [Mus musculus]
Length = 602
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 84/200 (42%), Gaps = 6/200 (3%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
V L+ L + + D+ F D+ + + FV+K+ + T AF + + AL ++
Sbjct: 51 VHLKNLSLNTNKRDLRNLFRDTDLTNDQIKFVYKDERRTRYAFVMFKNQKDYNTALGLHK 110
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGIL 173
+ R V + R+E + I R S + P K EG + +
Sbjct: 111 TVLQYRPVLIDPVSRKEMVRIIEC-YEKKRPESLEKERPGRVSQKYSQEGFSGSGQKLCI 169
Query: 174 RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDR 233
+R LPF K ++ FF DF L ED I++ + G GEA V F + E + A +R
Sbjct: 170 YIRNLPFDVTKGEVQKFFADFSLVEDDIYLLCDDKGVGLGEALVRFKSEEQAMKAERLNR 229
Query: 234 MTLGSRYIELFPSSHEEMDE 253
+ L S E+M E
Sbjct: 230 QRFLGIEVLLRLISEEQMQE 249
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 153 SIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210
S P AK + + V I+ ++ LPF A +I+DFF + + DS+ + N G
Sbjct: 506 SFPDAKVTSDLNLNCVSDKIIPVKISNLPFKANASEILDFFHGYKVIPDSVSLQYNEQGL 565
Query: 211 PTGEAFVEFANAEDSKAAM 229
P GEA V N ++ AA+
Sbjct: 566 PIGEAIVAMTNYNEALAAV 584
>gi|449268059|gb|EMC78930.1| putative RNA-binding protein 19, partial [Columba livia]
Length = 922
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 14/206 (6%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNR 116
V+LRG+P + TE + EFF L V + K K +G F L + AL+R +
Sbjct: 300 TVKLRGVPSNITEQKIREFFLPLKPVAIRIGKKARGKNSGYVFVDLKSEADMQRALKRKK 359
Query: 117 QNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLR 176
+ +G R +EVFR A A P + I R +E +G L +R
Sbjct: 360 EYLGGRCIEVFRCSNTPKETAPAKP-----DNQPWQRIMRDDEEEE---DLAESGRLFVR 411
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRM 234
LPF++ ++D+ F + D IH ++ +P G AFV + E + A A+ D
Sbjct: 412 NLPFTSTEEDLEKIFSKYGPLSD-IHFPIDRLTKKPKGFAFVTYMIPEHAVKAYAELDGQ 470
Query: 235 TLGSRYIELFPSS--HEEMDEALSRG 258
R + L PS+ E++ +A + G
Sbjct: 471 VFQGRMMHLLPSTIRKEKIKDADAEG 496
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 151 HRSIPRAK----SHDEGKDSAVHTGI---LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203
H+ +P K S E + S+ T ++LRG+P + + I +FF L +I I
Sbjct: 272 HQEVPVQKKTKGSALENRGSSAETSTPHTVKLRGVPSNITEQKIREFF--LPLKPVAIRI 329
Query: 204 TMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254
+ G+ +G FV+ + D + A+ + + LG R IE+F S+ + A
Sbjct: 330 GKKARGKNSGYVFVDLKSEADMQRALKRKKEYLGGRCIEVFRCSNTPKETA 380
>gi|26327221|dbj|BAC27354.1| unnamed protein product [Mus musculus]
Length = 82
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GLPF AG DI FFK + + +HI G GEAF+ FA ED++ A+++
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDGGVHII----GGKVGEAFIIFATDEDARRAISR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEA 254
+ +ELF SS EM +
Sbjct: 60 SGGFIKDSSVELFLSSKVEMQKT 82
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+RL GLPF VD+ FF GL I D VH GEAF + A+ R+
Sbjct: 4 VIRLLGLPFIAGPVDIRHFFKGLTIPDG-GVHIIGGKVGEAFIIFATDEDARRAISRSGG 62
Query: 118 NMGRRYVEVFRSKRQEYYKA 137
+ VE+F S + E K
Sbjct: 63 FIKDSSVELFLSSKVEMQKT 82
>gi|327269511|ref|XP_003219537.1| PREDICTED: RNA-binding protein 12B-like [Anolis carolinensis]
Length = 730
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMG 120
+RG+P+ TE D+ FF GL + ++ + N G+ P LQR+RQ M
Sbjct: 181 IRGMPYTATEGDILAFFDGLQVDGIIMLKTNGVNNGDGLVKFATPTDCTRGLQRDRQYMR 240
Query: 121 RRYVEVFRSKRQEYYKAIANE 141
R++ ++RS + + K++ +
Sbjct: 241 NRFIRIYRSNEETWIKSMGKK 261
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 67/262 (25%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAF----------------- 99
V+RL+GLP D+ F GL+I D +++ K GEAF
Sbjct: 4 VIRLQGLPVVAGPADIRHLFSGLNIPDGGVYITGGEK--GEAFVIFETDEDARQAMSYSE 61
Query: 100 ---------CVLGYPLQVDFALQRNR--------QNMGRRYVEVFRSKR----------- 131
C L ++ ++ NR + +G R+ + S
Sbjct: 62 RYIKNSRIGCFLSSKTEMQNVIELNRKRFDHSGRETIGSRWTDSGNSSSFSNIVAAMSKG 121
Query: 132 --------------QEYYKAIANEVSDVRGGSPH--RSIPRAKSHDEGKDSAVHTGILRL 175
+ Y N +D+ S + RS +H++ K S L +
Sbjct: 122 TGRYGYDSVDPFEDRLYSNGSENNSTDLSKLSYNHPRSNLNKITHNQFKTSNSDKLYLFI 181
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 235
RG+P++A + DI+ FF L D I I + ++G G+ V+FA D + +DR
Sbjct: 182 RGMPYTATEGDILAFFDG--LQVDGI-IMLKTNGVNNGDGLVKFATPTDCTRGLQRDRQY 238
Query: 236 LGSRYIELFPSSHEEMDEALSR 257
+ +R+I ++ S+ E +++ +
Sbjct: 239 MRNRFIRIYRSNEETWIKSMGK 260
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI F + + ++IT G GEAFV F ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPADIRHLFSGLNIPDGGVYIT----GGEKGEAFVIFETDEDARQAMSY 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ + I F SS EM + R
Sbjct: 60 SERYIKNSRIGCFLSSKTEMQNVIELNR 87
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+++L+ +PF A ++I+DFF + + +S+ I N G P+GEA + N ++ A + +
Sbjct: 655 LIKLKNIPFQATPNEILDFFHGYKIIPESLSIQHNQYGLPSGEAVIALVNYNEAMAVVNE 714
Query: 232 --DRMTLGSRYIEL 243
DR LG R I L
Sbjct: 715 LNDR-PLGQRKIRL 727
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 150 PHRSIPRAKSHDEGKD-SAVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206
P R R++S G S H G + ++ LPF K ++ FF+D + + I
Sbjct: 351 PRRITARSRSPLSGSSRSPPHNGEHYIHVKKLPFPIEKRELRAFFEDLDIPDSHITFLKI 410
Query: 207 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
D RP +A V F + D +A+ + L + I LFP S E +
Sbjct: 411 PDNRPNKDAVVMFRSMRDYYSALGYHKYPLRGQEILLFPISKEAV 455
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 47/218 (21%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
+ ++ LPF + ++ FF LDI D L P NR N
Sbjct: 377 IHVKKLPFPIEKRELRAFFEDLDIPD------------SHITFLKIP--------DNRPN 416
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRG-----------------------GSPHRSIP 155
+ V +FRS R +YY A+ +RG SP R
Sbjct: 417 --KDAVVMFRSMR-DYYSALGYHKYPLRGQEILLFPISKEAVMQLAGFSENEKSPERYHI 473
Query: 156 RAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215
+ D + S T + +R P+ K ++ FF F +S IH+ + G GE
Sbjct: 474 ANEKGDWDRYSDPKTCVY-VRNFPYDVTKREVRTFFAGFNISNYDIHLLYDDKGIGLGET 532
Query: 216 FVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
V+F +D++ A + +R + L S ++M E
Sbjct: 533 LVKFRTEDDARKAESLNRRRFLGTEVLLRCISEKQMKE 570
>gi|113931264|ref|NP_001039079.1| RNA binding motif protein 12 [Xenopus (Silurana) tropicalis]
gi|89267452|emb|CAJ83545.1| RNA binding motif protein 12 [Xenopus (Silurana) tropicalis]
gi|163915627|gb|AAI57516.1| RNA binding motif protein 12 [Xenopus (Silurana) tropicalis]
Length = 418
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 19/205 (9%)
Query: 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116
+VRL GL D D+ EFF G ++ D+ V GEAF V G A+++
Sbjct: 3 TIVRLEGLHADADSTDIEEFFKGFNVSDIQIVRGER---GEAFIVFGSDNHAREAIKKTG 59
Query: 117 QNMGRRYVEVFRSKRQE-------YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVH 169
+ + + + S + E Y K + + + S R + +
Sbjct: 60 SWIKNKRILLTLSNKTEMLCAFEVYRKKVVQTLEAAKQQSRKRKVDMLLAQP-------G 112
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+ + L G+ + I+DFFK L+ + I DG TG FV+F N + A+
Sbjct: 113 SLYVYLSGISQETKEAGIIDFFKS--LAVEQIIFCKGRDGSKTGNGFVKFTNVVHANEAL 170
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEA 254
++ L + + + +S E+ A
Sbjct: 171 KFNKCLLDKQCLSVISASEEQWVNA 195
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 18/211 (8%)
Query: 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVH-KNNKFTGEAFCVLGYPLQV 108
++QP V L G+ + E + +FF L + ++F ++ TG F +
Sbjct: 108 LAQPGSL-YVYLSGISQETKEAGIIDFFKSLAVEQIIFCKGRDGSKTGNGFVKFTNVVHA 166
Query: 109 DFALQRNRQNMGRRYVEVFRSKRQEYYKA--IANEVSDVRGGSPHRSIPRAKSHDEGKDS 166
+ AL+ N+ + ++ + V + +++ A + S +R G + A H +
Sbjct: 167 NEALKFNKCLLDKQCLSVISASEEQWVNAGGTLEKTSKIREGFTN---VIASMHQQ---- 219
Query: 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK 226
+ L LP K DI D +D L + +I + +S GE FV F N +
Sbjct: 220 ---QFYIYLLNLPPKVKKSDIRDLLEDPQLEDFNISLLTSS---SKGEGFVMFKNESQYQ 273
Query: 227 AAMAKDRMTLGSRYIELFPSSHEEM-DEALS 256
AA+ L I + P S + M D A+S
Sbjct: 274 AALLAHGKHLHDYRISILPISKKVMLDIAVS 304
>gi|303275530|ref|XP_003057059.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461411|gb|EEH58704.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 386
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM----------NSDGRPTGEAFVEF 219
GILR+RG+P A K D+++FF ED + I + + TGEAFVEF
Sbjct: 283 CGILRVRGMPPEATKADVVNFFYGMGAEEDKVKIIIAPGMANLAGSHPGAMSTGEAFVEF 342
Query: 220 A--NAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ +A +AA+ KDR LG + + +F SS EE+ GR
Sbjct: 343 SGDDANIQQAAL-KDRAVLGGKPVSVFRSSLEEVQRVALMGR 383
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 14/93 (15%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGL----DIVDVLFV---------HKNNKFTGEAFCVL-G 103
++R+RG+P + T+ DV FF+G+ D V ++ H TGEAF G
Sbjct: 285 ILRVRGMPPEATKADVVNFFYGMGAEEDKVKIIIAPGMANLAGSHPGAMSTGEAFVEFSG 344
Query: 104 YPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYK 136
+ A ++R +G + V VFRS +E +
Sbjct: 345 DDANIQQAALKDRAVLGGKPVSVFRSSLEEVQR 377
>gi|324497877|gb|ADY39587.1| putative fusili isoform B [Hottentotta judaicus]
Length = 112
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+RLRGLP+ A + I++F ++ + +H+ N+ G+P+GE F++ ++E S A
Sbjct: 17 IRLRGLPYEAQVEHILEFLGEYAKNIVFQGVHMVYNAQGQPSGETFIQM-DSEHSAYIAA 75
Query: 231 KDR----MTLG--SRYIELFPSSHEEMDEALSRG 258
+ R M G RYIE+F S ++M+ L+ G
Sbjct: 76 QQRHHRYMVFGKKQRYIEVFQCSVDDMNLVLTGG 109
>gi|308485032|ref|XP_003104715.1| hypothetical protein CRE_24036 [Caenorhabditis remanei]
gi|308257413|gb|EFP01366.1| hypothetical protein CRE_24036 [Caenorhabditis remanei]
Length = 974
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP +A D+ FF + + ++HI G GE FV FA+ ED++ AM +
Sbjct: 4 IIRLKNLPITAAASDVRTFFSGLKIPDGAVHII----GGDEGEVFVGFASDEDARIAMTR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALS 256
DR + I L SS E + ++
Sbjct: 60 DRSLIHGAEIRLLLSSKSEQNSVIT 84
>gi|118778307|ref|XP_308564.3| AGAP007221-PB [Anopheles gambiae str. PEST]
gi|116132320|gb|EAA04285.4| AGAP007221-PB [Anopheles gambiae str. PEST]
Length = 787
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP +A D+ FFK + + +HI G G+AF+ F+ ED++ AMA
Sbjct: 4 IIRLQNLPLAANASDVRSFFKGLSIPDGGVHIV----GGALGDAFIAFSTDEDARQAMAL 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ + + I L SS EM + + + R
Sbjct: 60 NGGCIKNEPISLLLSSRAEMQKVIEQAR 87
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+++ L G +I FFK +++ I + + +GR TG A+++F E K A+++D
Sbjct: 362 VKISNLESVTGYGEIRRFFKSHLITTQGIKMINDQNGRRTGTAYIQFLRKEGKKFALSRD 421
Query: 233 RMTLGSRYIELFPSSHEEMDEAL 255
+ + + + +E D A+
Sbjct: 422 GSAVRRMRVRIESITDQEFDSAV 444
Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
T + L L + +D+ FF++F L ++I +G TGEA V F N +D++ A+
Sbjct: 707 TSTVGLLNLAYKTTVEDVQKFFQEFNLPLENIRRRFLDNGNATGEAMVRFRNHQDAEKAL 766
>gi|158286040|ref|XP_001688002.1| AGAP007221-PA [Anopheles gambiae str. PEST]
gi|157020278|gb|EDO64651.1| AGAP007221-PA [Anopheles gambiae str. PEST]
Length = 1197
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP +A D+ FFK + + +HI G G+AF+ F+ ED++ AMA
Sbjct: 4 IIRLQNLPLAANASDVRSFFKGLSIPDGGVHIV----GGALGDAFIAFSTDEDARQAMAL 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ + + I L SS EM + + + R
Sbjct: 60 NGGCIKNEPISLLLSSRAEMQKVIEQAR 87
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 34/203 (16%)
Query: 61 LRGLPFDCTEVDVAEFF--HGLDIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
LR + F E DV FF G +VL VH + TGE G + A ++ Q
Sbjct: 974 LRNVDFHVYEEDVFAFFGHDGFQAKNVLLVHNERGGRTGECLVEFGSASEAAHAESKSSQ 1033
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIP---------------------- 155
N+GRR V R + +A + +G P +P
Sbjct: 1034 NLGRRKVFASHLDRGQVADLMARFHAIAQGLQPSHWLPDHLRNENSNGGGGSGGGGGGGG 1093
Query: 156 ----RAKSHDEGKDSAVHTGILR-----LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206
+++ D K+ V G R L L + +D+ FF++F L ++I
Sbjct: 1094 SGSGGSQNDDPEKNQGVGCGPYRTSTVGLLNLAYKTTVEDVQKFFQEFNLPLENIRRRFL 1153
Query: 207 SDGRPTGEAFVEFANAEDSKAAM 229
+G TGEA V F N +D++ A+
Sbjct: 1154 DNGNATGEAMVRFRNHQDAEKAL 1176
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%)
Query: 150 PHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209
P R+ R ++ + T L LR + F ++D+ FF ++ + N G
Sbjct: 949 PRRANSRFAPSNDSSEMFQRTNWLLLRNVDFHVYEEDVFAFFGHDGFQAKNVLLVHNERG 1008
Query: 210 RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 241
TGE VEF +A ++ A +K LG R +
Sbjct: 1009 GRTGECLVEFGSASEAAHAESKSSQNLGRRKV 1040
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+++ L G +I FFK +++ I + + +GR TG A+++F E K A+++D
Sbjct: 528 VKISNLESVTGYGEIRRFFKSHLITTQGIKMINDQNGRRTGTAYIQFLRKEGKKFALSRD 587
Query: 233 RMTLGSRYIELFPSSHEEMDEAL 255
+ + + + +E D A+
Sbjct: 588 GSAVRRMRVRIESITDQEFDSAV 610
>gi|221129839|ref|XP_002156393.1| PREDICTED: epithelial splicing regulatory protein 2-like [Hydra
magnipapillata]
Length = 489
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSK-AAMAKDR 233
+R LP+ D+I+ FF++F + DS+ I DGR +G+A + F + D++ A A +R
Sbjct: 417 IRNLPYEVTPDEILQFFRNFPVIADSVRIHYLEDGRCSGDAIISFRGSRDARDAVQALNR 476
Query: 234 MTLGSRYIELF 244
LG R +ELF
Sbjct: 477 KNLGRRKVELF 487
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
S + G+LR+ LP +A DI FKD + IH+ + +DG+ G AF+ F N D+
Sbjct: 3 SRTNAGVLRVDRLPLNATPGDIRRHFKDHGARPEDIHLVLEADGKHNGSAFLTFTNQGDA 62
Query: 226 KAAMAKDRMTLGSRYIELFPSSHEEMDE 253
+ + L + + + S+ E ++
Sbjct: 63 AHGLNANDSLLKDKRLAVNESNPAEFNK 90
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 178 LPFSAGKDDIMDFFKDFVLSEDSIHITMNS----DGRPTGEAFVEFANAEDSKAAMAKDR 233
LP++A + DI DFF+ VL+ D I + N G+P G A VEF + D++ + D
Sbjct: 232 LPYNATEVDIQDFFRP-VLTRD-IFLIRNKVGKYIGKPNGNAVVEFFSESDAREVLKCDG 289
Query: 234 MTLGSRYIELFPSSHEEMDEAL 255
G R + + EE+ A+
Sbjct: 290 KRFGQRNAVVQRARKEEIISAI 311
>gi|91094045|ref|XP_968644.1| PREDICTED: similar to CG7879 CG7879-PA [Tribolium castaneum]
gi|270003124|gb|EEZ99571.1| hypothetical protein TcasGA2_TC001555 [Tribolium castaneum]
Length = 779
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227
+ T + L LP +I DFF D + IH+ N G TG+AF EF ED+
Sbjct: 550 LDTDCINLTRLPLQTNNIEIADFFSDIGVRPTKIHLMSNRMGF-TGQAFCEFKTKEDAAQ 608
Query: 228 AMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
A+ KD + G + + P EEM+ L +
Sbjct: 609 ALKKDNSSFGPNIVSVQPFPREEMEHILQQ 638
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
I+RL+ LP+SA DI FF + E +HI G G+AF+ F+ ED++ A A+
Sbjct: 4 IIRLQNLPWSANALDIRQFFHGLSIPEGGVHIV----GGEQGDAFIAFSTDEDARQAFAR 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ + I L SS EM + + R
Sbjct: 60 NNGKIKEIQISLMLSSRTEMQKVIEAAR 87
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
++RL+ LP+ +D+ +FFHGL I + VH G+AF A RN
Sbjct: 4 IIRLQNLPWSANALDIRQFFHGLSIPEG-GVHIVGGEQGDAFIAFSTDEDARQAFARNNG 62
Query: 118 NMGRRYVEVFRSKRQEYYKAI 138
+ + + S R E K I
Sbjct: 63 KIKEIQISLMLSSRTEMQKVI 83
>gi|159164255|pdb|2DNN|A Chain A, Solution Structure Of Rna Binding Domain In Rna-Binding
Protein 12
Length = 109
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ + G+PFSA ++D+ DFF L D++H+ + GR G V+F + +D+ A+ ++
Sbjct: 19 VSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 76
Query: 233 RMTLGSRYIELFPSSHEEMDEA 254
RM + RY+E+ P++ + A
Sbjct: 77 RMLMIQRYVEVSPATERQWVAA 98
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 55 PFPV------VRLRGLPFDCTEVDVAEFFHGL--DIVDVL--FVHKNNKFTGEAFCVLGY 104
P P+ V + G+PF E DV +FFHGL D V +L V +NN G
Sbjct: 9 PLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNN---GNGLVKFLS 65
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKA 137
P AL+RNR M +RYVEV + +++ A
Sbjct: 66 PQDTFEALKRNRMLMIQRYVEVSPATERQWVAA 98
>gi|324500976|gb|ADY40441.1| RNA-binding protein 12 [Ascaris suum]
Length = 1088
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+ I+RL+ LP SA DI FF + + ++HI G P G+AF+ FA ED++ AM
Sbjct: 2 SWIIRLQRLPLSANAADIRTFFAGLRIPDGAVHIV----GGPEGDAFIGFATDEDARQAM 57
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ + + + L SS EM+ +++ R
Sbjct: 58 RYNDRRIHDQRVRLLLSSRVEMEAVIAKAR 87
>gi|443700255|gb|ELT99307.1| hypothetical protein CAPTEDRAFT_198265, partial [Capitella teleta]
Length = 141
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEF-ANAEDSKAAM 229
+RLRGLPF A DI+ F + S +H+ N+ G P+GEAF++ ++A +
Sbjct: 12 IRLRGLPFEATVTDILTFLGEHSRSIVFQGVHMVYNAQGTPSGEAFIQMDSDASAESTTL 71
Query: 230 AKDRMTLGS----RYIELFPSSHEEMDEALSRG 258
K R + S RYIE+ S E+M+ L+ G
Sbjct: 72 NKHRKFMISNNKKRYIEVLQCSGEDMNLVLTSG 104
>gi|74096255|ref|NP_001027771.1| swan [Ciona intestinalis]
gi|31324620|gb|AAP48572.1| swan [Ciona intestinalis]
Length = 1075
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 16/204 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115
+VR+ PF+CTE V +FF I + FV+K + +G F A R+
Sbjct: 630 LVRIANSPFNCTEEAVRKFFSDFSIPHDGIQFVYKGGRRSGHIFVKFSNADDAVKAALRD 689
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSH-------DEGKDSAV 168
Q M R V V +S + K I + +S P K E + V
Sbjct: 690 NQRMMGRNVLVGQSSVAQM-KEIHHRISGEHWFPQFSVTPDIKEQGLLSKKIKENNLTCV 748
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
G L R + D+ + + LSED + + M+ G GEA VE + ED A
Sbjct: 749 CIGNLHSRTI-----TSDVKNCLLNHELSEDGVTVLMDKSGLCIGEACVELRSTEDCIRA 803
Query: 229 MAKD-RMTLGSRYIELFPSSHEEM 251
D + + + I+++P S +EM
Sbjct: 804 TDLDSNVKILNNSIQVWPLSKQEM 827
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+ LP +AG DI FF + + +HI +DG AF+ F+ ED++ AM +
Sbjct: 6 VIRLKHLPLAAGTFDIRQFFSGLRIPDGGVHIIGGTDG----TAFILFSTDEDARQAMMR 61
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D + + I+L SSH EM + +
Sbjct: 62 DGQHVRATAIKLMLSSHTEMKTVIEHSQ 89
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
+ ++R+ PF+ ++ + FF DF + D I GR +G FV+F+NA+D+ A
Sbjct: 627 QSCLVRIANSPFNCTEEAVRKFFSDFSIPHDGIQFVYKG-GRRSGHIFVKFSNADDAVKA 685
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSR 257
+D + R + + SS +M E R
Sbjct: 686 ALRDNQRMMGRNVLVGQSSVAQMKEIHHR 714
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 100 CVLGYPLQVDF--ALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVR-GGSPHRSIPR 156
C++ + VD ALQ++R+ +G R++ + S +++ +R G S RS
Sbjct: 108 CLIKFKTVVDKEDALQKDRKYLGGRFIRITTSSERQWLLVSTQSCETIRPGESRKRSKTI 167
Query: 157 AKSHDEGKDSAV-----HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 211
S + K S + + +RGLP +A + FF + + + I +DG+
Sbjct: 168 TSSENTPKRSRALSPLKNENCVEVRGLPQNADYHIMSGFFSGLNIVDGGLFI--ENDGKI 225
Query: 212 T-GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEALSR 257
G AFVEFA D K A+ +D + + + + S + M + + +
Sbjct: 226 CKGRAFVEFAAYADYKNALVRDGDMIDGKQVRVIGLSRQNMIDQIRK 272
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 36/59 (61%)
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
+++ L + ++D+++FF F DS+ + + G+PTG+ + F + E ++AA+A+
Sbjct: 1001 VKMSNLSYDITREDLLEFFSGFDPLPDSVQLMYSQGGKPTGDGVISFPHIEPARAAIAQ 1059
>gi|432117035|gb|ELK37602.1| Heterogeneous nuclear ribonucleoprotein H [Myotis davidii]
Length = 188
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+HI ++ DGR TGEA VEFA ED+ AAM+KD+ + RY+EL S+
Sbjct: 66 VHIAISPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELLNST 112
>gi|297693058|ref|XP_002823848.1| PREDICTED: probable RNA-binding protein 19 [Pongo abelii]
Length = 999
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 91/206 (44%), Gaps = 24/206 (11%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKF-------TGEAFCVLGY 104
+P V+LRG PF+ TE + G+ + V K +F +G F
Sbjct: 327 EPTTCHTVKLRGAPFNVTEHSM-----GVPLGTATSVCKACRFYLCHCPLSGYIFVDFSN 381
Query: 105 PLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGK 164
+V AL+ NR+ MG RY+EVFR K K + G R +E +
Sbjct: 382 EEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQG-------RILGENEEE 434
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANA 222
+ +G L +R LP+++ ++D+ F + LSE +H ++S +P G AF+ F
Sbjct: 435 EDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFITFMFP 492
Query: 223 EDS-KAAMAKDRMTLGSRYIELFPSS 247
E + KA D R + + PS+
Sbjct: 493 EHAVKAYSEVDGQVFQGRMLHVLPST 518
>gi|350592780|ref|XP_003483535.1| PREDICTED: heterogeneous nuclear ribonucleoprotein H3-like [Sus
scrofa]
Length = 161
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 201 IHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247
+HI + +DGR TGEA VEF ED+ AAM+KD+ + RYIELF +S
Sbjct: 38 VHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNS 84
>gi|291407017|ref|XP_002719829.1| PREDICTED: RBD (RNA binding domain) protein family member
(rbd-1)-like [Oryctolagus cuniculus]
Length = 1025
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 72 DVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
+V EF L V + V H N TG F +V AL+ NR+ MG RY+EVFR
Sbjct: 283 NVLEFLAPLKPVAIRIVRNAHGNK--TGYVFVDFSSEEEVKKALKCNREYMGGRYIEVFR 340
Query: 129 SKRQEYYKAIANEVSDVRGGSPHRSIP---RAKSHDEGKDSAVHTGILRLRGLPFSAGKD 185
K V +G + P R +E ++ +G L +R LP+++ ++
Sbjct: 341 EK----------PVPATKGPQKSSTRPWQGRTLGENEEEEDLADSGRLFVRNLPYTSTEE 390
Query: 186 DIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS-KAAMAKDRMTLGSRYIE 242
D+ F + LSE +H ++S +P G AFV F E + KA D R +
Sbjct: 391 DLEKLFSKYGPLSE--LHYPIDSLTKKPKGFAFVTFMMPEHAVKAYAGVDGQVFQGRMLH 448
Query: 243 LFPSS 247
+ PS+
Sbjct: 449 VLPST 453
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 235
R P + + ++++F L +I I N+ G TG FV+F++ E+ K A+ +R
Sbjct: 273 RRAPEARAQKNVLEFLAP--LKPVAIRIVRNAHGNKTGYVFVDFSSEEEVKKALKCNREY 330
Query: 236 LGSRYIELF 244
+G RYIE+F
Sbjct: 331 MGGRYIEVF 339
>gi|449477354|ref|XP_002196178.2| PREDICTED: probable RNA-binding protein 19 [Taeniopygia guttata]
Length = 944
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 14/193 (7%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQ 117
V+LRG P TE + EFF L V + K K +G F L ++ AL+R ++
Sbjct: 298 VKLRGAPSSITEEKIREFFFPLKPVAIRMGKKAQGKNSGYIFVDLKSEAEMQRALKRKKE 357
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG 177
+G R VEV R + V H+ R DE ++ +G L +R
Sbjct: 358 FLGGRCVEVSRCRN--------TPKEPVPAKPEHQPWQRTLRDDEEEEDLSESGRLFVRN 409
Query: 178 LPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRM 234
LPF++ ++D+ F + LSE IH ++ +P G AF+ + E + A+A+ D
Sbjct: 410 LPFTSTEEDLEKIFSKYGPLSE--IHFPIDKLTKKPKGFAFITYMIPEHAVKALAELDGQ 467
Query: 235 TLGSRYIELFPSS 247
R + L PS+
Sbjct: 468 VFQGRMMHLLPST 480
Score = 37.7 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 136 KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV 195
KA E G RS G+ S T ++LRG P S ++ I +FF F
Sbjct: 263 KAQQTEQKTPAGKKKKRSTLEVHQASPGEASTAFT--VKLRGAPSSITEEKIREFF--FP 318
Query: 196 LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 243
L +I + + G+ +G FV+ + + + A+ + + LG R +E+
Sbjct: 319 LKPVAIRMGKKAQGKNSGYIFVDLKSEAEMQRALKRKKEFLGGRCVEV 366
>gi|440797920|gb|ELR18994.1| fibronectin type III domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 740
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++++RGLP+ +DI FF ++ + + I +N DGRPTG+ FV FA+A+ + A+ +
Sbjct: 681 VVKMRGLPWEVTPEDIARFFATLDIAPEGVSIALNFDGRPTGDGFVCFASADHATLALQR 740
>gi|426247328|ref|XP_004017438.1| PREDICTED: probable RNA-binding protein 19 [Ovis aries]
Length = 916
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 72 DVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
+V EF L V + V H N TG F +V AL+ NR+ MG RY+EVFR
Sbjct: 267 NVMEFLAPLKPVAIRIVRNAHGNK--TGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFR 324
Query: 129 SKRQEYYKA-IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDI 187
+ KA + N +G R++ H+E +D A +G L +R LP+++ ++D+
Sbjct: 325 ERNVPAAKAPLKNGAKPWQG----RTL---GEHEEEEDLA-DSGRLFVRNLPYTSSEEDL 376
Query: 188 MDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244
F + LSE +H ++S +P G AFV F E + A A+ D R + +
Sbjct: 377 EKLFSRYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 434
Query: 245 PSS 247
PS+
Sbjct: 435 PST 437
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
K ++M+F L +I I N+ G TG FV+F++ E+ + A+ +R +G RYIE
Sbjct: 264 AKKNVMEFLAP--LKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIE 321
Query: 243 LF 244
+F
Sbjct: 322 VF 323
>gi|327269587|ref|XP_003219575.1| PREDICTED: RNA-binding protein 12B-like [Anolis carolinensis]
Length = 730
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 61 LRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMG 120
+R +P+ TE D+ FF GL + ++ + N G+ P LQR+RQ M
Sbjct: 181 IRSMPYTATEDDIIAFFDGLQVDGMIMLKTNGVNNGDGLVKFATPTDCTRGLQRDRQYMR 240
Query: 121 RRYVEVFRSKRQEYYKAIANE 141
R++ ++RS + + K++ +
Sbjct: 241 HRFIRIYRSNEETWIKSMGKK 261
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 105/262 (40%), Gaps = 67/262 (25%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAF----------------- 99
V+RL+GLP D+ F GL+I D +++ K GEAF
Sbjct: 4 VIRLQGLPVVAGPADIRHLFSGLNIPDGGVYITGGEK--GEAFVIFETDEDARQAMSYSE 61
Query: 100 ---------CVLGYPLQVDFALQRNR--------QNMGRRYVEVFRSKRQEYYKAIANEV 142
C L ++ ++ NR + +G R+++ S A ++
Sbjct: 62 RYIKNSRIGCFLSSKTEMQNVIELNRKRFDHSGRETIGSRWIDSSNSSSFSNIVASMSKG 121
Query: 143 SDVRG--------------GSPHRSI---------PRAK----SHDEGKDSAVHTGILRL 175
+ G GS + S PR+ +H++ K S L +
Sbjct: 122 TGRSGYDSVDPFEDRLHSNGSENSSTDLSKLSYNHPRSNLNKITHNQFKTSNSDELYLFI 181
Query: 176 RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 235
R +P++A +DDI+ FF L D + I + ++G G+ V+FA D + +DR
Sbjct: 182 RSMPYTATEDDIIAFFDG--LQVDGM-IMLKTNGVNNGDGLVKFATPTDCTRGLQRDRQY 238
Query: 236 LGSRYIELFPSSHEEMDEALSR 257
+ R+I ++ S+ E +++ +
Sbjct: 239 MRHRFIRIYRSNEETWIKSMGK 260
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI F + + ++IT G GEAFV F ED++ AM+
Sbjct: 4 VIRLQGLPVVAGPADIRHLFSGLNIPDGGVYIT----GGEKGEAFVIFETDEDARQAMSY 59
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ + I F SS EM + R
Sbjct: 60 SERYIKNSRIGCFLSSKTEMQNVIELNR 87
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 63/247 (25%)
Query: 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDI--VDVLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
P V +R P+D T+ ++ FF G +I D+ ++ ++K G ++ + + D
Sbjct: 486 PKTCVYVRNFPYDVTKREIHTFFAGFNINNYDIHLLY-DDKGIGLGETLVKFRTEDD--- 541
Query: 113 QRNRQNMGRR-------YVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAK------- 158
R +N+ RR + K+ + + VSD + RS R +
Sbjct: 542 ARKAENLNRRRFLGTEVLLRCISEKQMKEFGVNVPPVSDGKMQDHIRSYERGQQGNQKHP 601
Query: 159 ------------SHDEGKDSAVHT----------------------------GILRLRGL 178
+ D KDSA T +++L+ +
Sbjct: 602 SDYRHPPSDLISTSDNFKDSAPFTEFGEDVRGNFPGGRFMSDSNVSGSSNCFTLIKLKNI 661
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK--DRMTL 236
PF A ++I+DFF + + +S+ I N G P+GEA + N ++ A + + DR +
Sbjct: 662 PFRATPNEILDFFHGYKIIPESLSIQHNQYGLPSGEAVIALVNYNEAMAVVNELNDR-PI 720
Query: 237 GSRYIEL 243
G R I L
Sbjct: 721 GQRKIRL 727
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 150 PHRSIPRAKSHDEGKD-SAVHTG--ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206
P R R++S G S H G + ++ LPF K ++ FF+D + + I
Sbjct: 351 PRRITARSRSPLSGSSRSPPHNGEHYIHVKKLPFPIEKRELRAFFEDLDIPDSHITFLKI 410
Query: 207 SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245
D RP +A V F + D +A+ + L + I LFP
Sbjct: 411 PDNRPNKDAVVMFRSMRDYYSALGYHKYPLRGQEILLFP 449
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 45/217 (20%)
Query: 59 VRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQN 118
+ ++ LPF + ++ FF LDI D L P NR N
Sbjct: 377 IHVKKLPFPIEKRELRAFFEDLDIPD------------SHITFLKIP--------DNRPN 416
Query: 119 MGRRYVEVFRSKRQEYYKAIANEVSDVRGGS------PHRSIPRAKSHDEGKDSAVHTGI 172
+ V +FRS R +YY A+ +RG P ++ + E + S I
Sbjct: 417 --KDAVVMFRSMR-DYYSALGYHKYPLRGQEILLFPIPKEAVMQLAGFSENEKSPERYHI 473
Query: 173 ----------------LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAF 216
+ +R P+ K +I FF F ++ IH+ + G GE
Sbjct: 474 ANEKGDWDRYSDPKTCVYVRNFPYDVTKREIHTFFAGFNINNYDIHLLYDDKGIGLGETL 533
Query: 217 VEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDE 253
V+F +D++ A +R + L S ++M E
Sbjct: 534 VKFRTEDDARKAENLNRRRFLGTEVLLRCISEKQMKE 570
>gi|390465839|ref|XP_003733475.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Callithrix jacchus]
Length = 573
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRM 234
+RG + DI + F L+ +HI M DGR T +A VEFA E++ AAM+KDR
Sbjct: 457 MRGCHAAETNSDIYNLFSP--LNPVRVHIEMGPDGRLTCKADVEFATWEEAGAAMSKDRA 514
Query: 235 TLGSRYIEL 243
+ RYIEL
Sbjct: 515 NMQHRYIEL 523
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 75/200 (37%), Gaps = 28/200 (14%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKF-----TGEAFCVLGYPLQVDFAL 112
V++LRGLP+ C+ D I + EAF LG + A
Sbjct: 185 VIKLRGLPWPCSTEDAPNLLSSCTIHHPAAXRAPATLERGGQSSEAFVELGSEDDIKMAX 244
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+ M +EVF+S R E + R P S VH
Sbjct: 245 GKA---MVHWLIEVFKSHRTEVSWVL-------------RKHPGPNSASSSNYRFVHX-- 286
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT-GEAFVEFANAEDSKAAMAK 231
+GLP K + + FF + D I T++ D R + E V A+ E ++ + K
Sbjct: 287 --HQGLPSGXHKQETIQFFSELETVPDGI--TLSVDPRESLQEKLVLLASQELAEKVLXK 342
Query: 232 DRMTLGSRYIELFPSSHEEM 251
+ G R +E+F S EE+
Sbjct: 343 PKERTGHRNMEVFKSGQEEV 362
>gi|395730677|ref|XP_003775769.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein F-like [Pongo abelii]
Length = 352
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236
GLP+ A K DI + F L+ +H M R TG+A V+FA E++ AA ++DR+++
Sbjct: 238 GLPYKATKSDIYNLFSPPNLAR--VHTEMGPHERVTGKADVKFATQEEAVAATSRDRVSM 295
Query: 237 GSRYIELF 244
RY+ELF
Sbjct: 296 WHRYMELF 303
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 24/146 (16%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDI-----VDVLFVHKNNKFTGEAFCVLGYPLQVDFAL 112
VVRL G + C+ D + + + H+ + +GEAF LG + AL
Sbjct: 12 VVRLHGPSWPCSVEDAQDVLSNCTMPHRAAGEFHPHHRXGRQSGEAFVELGXEENIKMAL 71
Query: 113 QRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGI 172
+++R++MG R + VF+S E + HR A S + G
Sbjct: 72 EKDRESMGHRRIAVFKSHXTEVSWVLKK----------HRGPNSAGSANYGF-------A 114
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSE 198
L LRGL K++I+ FF VL E
Sbjct: 115 LELRGLASGCXKEEIVQFFS--VLXE 138
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAA 228
++RL G + +D D + + + H + GR +GEAFVE E+ K A
Sbjct: 12 VVRLHGPSWPCSVEDAQDVLSNCTMPHRAAGEFH-PHHRXGRQSGEAFVELGXEENIKMA 70
Query: 229 MAKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ KDR ++G R I +F S E+ L + R
Sbjct: 71 LEKDRESMGHRRIAVFKSHXTEVSWVLKKHR 101
>gi|156401535|ref|XP_001639346.1| predicted protein [Nematostella vectensis]
gi|156226474|gb|EDO47283.1| predicted protein [Nematostella vectensis]
Length = 90
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 164 KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI--HITMNSDGRPTGEAFVEFAN 221
+D + I+R+ GLPF + K D+ FF ++ + H + + G+ TG AFV F +
Sbjct: 9 QDQEATSTIVRMFGLPFESSKRDLYKFFNGLKIASIDLLKHKSGKNQGKNTGVAFVVFKS 68
Query: 222 AEDSKAAMAKDRMTLGSRYIEL 243
D+ A+ DR +G RYIEL
Sbjct: 69 NNDASKALKMDRSYIGHRYIEL 90
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKN----NKFTGEAFCVLGYPL 106
Q +VR+ GLPF+ ++ D+ +FF+GL I + L HK+ K TG AF V
Sbjct: 11 QEATSTIVRMFGLPFESSKRDLYKFFNGLKIASIDLLKHKSGKNQGKNTGVAFVVFKSNN 70
Query: 107 QVDFALQRNRQNMGRRYVEV 126
AL+ +R +G RY+E+
Sbjct: 71 DASKALKMDRSYIGHRYIEL 90
>gi|296478475|tpg|DAA20590.1| TPA: RNA binding motif protein 19 [Bos taurus]
Length = 825
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 72 DVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
+V EF L V + V H N TG F +V AL+ NR+ MG RY+EVFR
Sbjct: 270 NVMEFLAPLKPVAIRIVRNAHGNK--TGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFR 327
Query: 129 SKRQEYYKA-IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDI 187
+ KA + N +G R++ H+E +D A +G L +R LP+++ ++D+
Sbjct: 328 ERNIPVAKAPLKNGAKPWQG----RTL---GEHEEEEDLA-DSGRLFVRNLPYTSSEEDL 379
Query: 188 MDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244
F + +SE +H ++S +P G AFV F E + A A+ D R + +
Sbjct: 380 EKLFSRYGPVSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 437
Query: 245 PSS 247
PS+
Sbjct: 438 PST 440
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
K ++M+F L +I I N+ G TG FV+F++ E+ + A+ +R +G RYIE
Sbjct: 267 AKKNVMEFLAP--LKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIE 324
Query: 243 LF 244
+F
Sbjct: 325 VF 326
>gi|170057361|ref|XP_001864450.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
gi|167876772|gb|EDS40155.1| heterogeneous nuclear ribonucleoprotein [Culex quinquefasciatus]
Length = 1174
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAED 224
D V IL + LPF A +DI+DFFK + ++ D + DGR TG+A V F + +D
Sbjct: 1091 DHPVPGSILSMGNLPFRARNEDIVDFFKQYNITLDDVKRRYLPDGRSTGDAMVRFQSPQD 1150
Query: 225 SKAAM-AKDRMTLGSRYIELFPS 246
+ A+ +M +G R + ++ S
Sbjct: 1151 AHRALETHQQMRIGGRELRMWIS 1173
>gi|114051910|ref|NP_001039420.1| probable RNA-binding protein 19 [Bos taurus]
gi|88954099|gb|AAI14030.1| RNA binding motif protein 19 [Bos taurus]
Length = 920
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 19/183 (10%)
Query: 72 DVAEFFHGLDIVDVLFV---HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128
+V EF L V + V H N TG F +V AL+ NR+ MG RY+EVFR
Sbjct: 270 NVMEFLAPLKPVAIRIVRNAHGNK--TGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFR 327
Query: 129 SKRQEYYKA-IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDI 187
+ KA + N +G R++ H+E +D A +G L +R LP+++ ++D+
Sbjct: 328 ERNIPVAKAPLKNGAKPWQG----RTL---GEHEEEEDLA-DSGRLFVRNLPYTSSEEDL 379
Query: 188 MDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244
F + +SE +H ++S +P G AFV F E + A A+ D R + +
Sbjct: 380 EKLFSRYGPVSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 437
Query: 245 PSS 247
PS+
Sbjct: 438 PST 440
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242
K ++M+F L +I I N+ G TG FV+F++ E+ + A+ +R +G RYIE
Sbjct: 267 AKKNVMEFLAP--LKPVAIRIVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIE 324
Query: 243 LF 244
+F
Sbjct: 325 VF 326
>gi|118401869|ref|XP_001033254.1| hypothetical protein TTHERM_00419990 [Tetrahymena thermophila]
gi|89287602|gb|EAR85591.1| hypothetical protein TTHERM_00419990 [Tetrahymena thermophila SB210]
Length = 1468
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVEFANAEDSKAAM 229
GILR+RGLP+S +I +FFKDF + +D + N + + TGE+F+ N + + A
Sbjct: 1284 GILRIRGLPYSCKTKEIYEFFKDFEIVQDGVKRVYNYQEQKQTGESFIILKNKDQVREAK 1343
Query: 230 AK-DRMTLGSRYIELFPSSHEE 250
K + RYIE+F S E
Sbjct: 1344 QKLHGERIFQRYIEVFQSDPNE 1365
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVD----VLFVHKNNKFTGEAFCVLGYPLQVDFA 111
+ ++R+RGLP+ C ++ EFF +IV ++ ++ K TGE+F +L QV A
Sbjct: 1283 YGILRIRGLPYSCKTKEIYEFFKDFEIVQDGVKRVYNYQEQKQTGESFIILKNKDQVREA 1342
Query: 112 LQR-NRQNMGRRYVEVFRSKRQEYYKAIANEV 142
Q+ + + + +RY+EVF+S E+ + +++
Sbjct: 1343 KQKLHGERIFQRYIEVFQSDPNEFLDYLIDKI 1374
>gi|391335607|ref|XP_003742181.1| PREDICTED: probable RNA-binding protein 19-like [Metaseiulus
occidentalis]
Length = 836
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 20/208 (9%)
Query: 56 FP-VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
FP VV +R L F D+ FF GL + + + G A+ + AL
Sbjct: 198 FPHVVVVRNLSFKWKRKDLKSFFKGLSVCSIRKCLRAG-VKGVAYVAFETEEDLKEALGL 256
Query: 115 NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR 174
++ M RR V V + SD + + + K + + TG L
Sbjct: 257 DKCFMERRQVRVLKH-------------SDRTKETQEKPVSAYKDKEVAPEVVADTGRLF 303
Query: 175 LRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNS-DGRPTGEAFVEFANAEDS-KAAMAK 231
+R LP++ ++++ D FK F ++E +H++++S +P G AFV + E + KA A
Sbjct: 304 IRNLPYTTTENELEDLFKPFGPIAE--LHLSIDSITKKPKGFAFVAYVFPEHAMKAHQAL 361
Query: 232 DRMTLGSRYIELFPSSHEEMDEALSRGR 259
D T R + + P ++ D LS+ +
Sbjct: 362 DYTTFHGRLLHIIPGLAKQEDPLLSKDK 389
>gi|25013120|gb|AAN71659.1| SD14463p [Drosophila melanogaster]
Length = 359
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 163 GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222
G D +T + +RGLP+++ ++D+ FF+ + ++ I N G +G A F
Sbjct: 248 GNDIEYYT--IHMRGLPYTSFENDVFKFFE--PIRPANVRINYNKKGLHSGTADAYFDTY 303
Query: 223 EDSKAAMAKDRMTLGSRYIELF 244
EDS+ AM + R +GSRYIELF
Sbjct: 304 EDSQVAMKRHREQMGSRYIELF 325
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQR 114
+ + +RGLP+ E DV +FF + +V + +K +G A A++R
Sbjct: 253 YYTIHMRGLPYTSFENDVFKFFEPIRPANVRINYNKKGLHSGTADAYFDTYEDSQVAMKR 312
Query: 115 NRQNMGRRYVEVF 127
+R+ MG RY+E+F
Sbjct: 313 HREQMGSRYIELF 325
>gi|324519617|gb|ADY47430.1| RNA-binding protein 12 [Ascaris suum]
Length = 218
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229
+ I+RL+ LP SA DI FF + + ++HI G P G AF+ FA D++ AM
Sbjct: 20 SWIIRLQRLPLSANAADIRTFFAGLRIPDGAVHIV----GGPEGNAFIGFATDVDARQAM 75
Query: 230 AKDRMTLGSRYIELFPSSHEEMDEALSRGR 259
+ + + + L SS EM+ +++ R
Sbjct: 76 RYNDRRIHDQRVRLLLSSRVEMEAVIAKAR 105
>gi|148222286|ref|NP_001088388.1| uncharacterized protein LOC495241 [Xenopus laevis]
gi|54038625|gb|AAH84663.1| LOC495241 protein [Xenopus laevis]
Length = 419
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 18/204 (8%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
++RL GL D+ EFF GL + D+ V GEA+ V + A++++
Sbjct: 4 IIRLEGLHVAADSTDIEEFFKGLSVSDIQIVRGER---GEAYIVFASDMDARLAMKKSGS 60
Query: 118 NMGRRYVEVFRSKRQE-------YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170
+ + + + S E Y K + + + S R + + G +
Sbjct: 61 CIKNKSIVLSPSNNIEMLCAFEAYRKKVEKTLEAAKQQSRKRKLEKMPLAQPG------S 114
Query: 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230
+ L G+ + DI+D F L+ + I DG TG FV+F NA + A
Sbjct: 115 LYVCLTGMSQDTKEADIIDLFNS--LAVEQIIFYRGRDGSKTGSGFVKFTNAAHATEAAR 172
Query: 231 KDRMTLGSRYIELFPSSHEEMDEA 254
+ LG + + + ++ E+ +A
Sbjct: 173 FNIRILGKKCLSVTIATEEQWVKA 196
>gi|320168072|gb|EFW44971.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 680
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL GL ++ + DI++FF D + + + + S+ +G A+ E +A D AA+
Sbjct: 166 VIRLVGLAYAVTETDIVEFFSD-IPVKQVVVVQRRSEMHHSGVAYAELVSANDIAAALQM 224
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
L RY+E++PS HE + +AL
Sbjct: 225 HHRFLKGRYVEIYPSEHEHLVKAL 248
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKF--TGEAFCVLGYPLQVDFALQRN 115
V+RL GL + TE D+ EFF + + V+ V + ++ +G A+ L + ALQ +
Sbjct: 166 VIRLVGLAYAVTETDIVEFFSDIPVKQVVVVQRRSEMHHSGVAYAELVSANDIAAALQMH 225
Query: 116 RQNMGRRYVEVFRSKRQEYYKAIANEVS 143
+ + RYVE++ S+ + KA+ + S
Sbjct: 226 HRFLKGRYVEIYPSEHEHLVKALEHNES 253
>gi|71026370|ref|XP_762861.1| hypothetical protein [Theileria parva strain Muguga]
gi|68349813|gb|EAN30578.1| hypothetical protein TP03_0737 [Theileria parva]
Length = 968
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 12/97 (12%)
Query: 43 PPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAF-- 99
PP Y P ++ L+G+PF TE DV ++ DIV V+F+ ++N FTG+A+
Sbjct: 169 PPGIY----SPSYDALLYLKGIPFKATEKDVFDWLKNYDIVSVIFIKNENGFFTGDAYVR 224
Query: 100 CVLGYPLQVDFALQRNRQN--MGRRYVEVFRSKRQEY 134
CV +QV + + +N +G RY++VFR Y
Sbjct: 225 CV---NIQVRDKVAKEMENKRIGARYIQVFRVSENAY 258
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 121 RRYVEVFRSKRQEYYK--AIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
R+ VE + E ++ AI + D++ S + +P G S + +L L+G+
Sbjct: 131 RKMVEAVTKETSEDHRNLAIQKFIGDLQYVSRRKKLPTPP----GIYSPSYDALLYLKGI 186
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE-DSKAAMAKDRMTLG 237
PF A + D+ D+ K++ + S+ N +G TG+A+V N + K A + +G
Sbjct: 187 PFKATEKDVFDWLKNYDIV--SVIFIKNENGFFTGDAYVRCVNIQVRDKVAKEMENKRIG 244
Query: 238 SRYIELFPSSHEEMDEALSRG 258
+RYI++F S E G
Sbjct: 245 ARYIQVFRVSENAYLEYYHSG 265
>gi|443715937|gb|ELU07669.1| hypothetical protein CAPTEDRAFT_49477, partial [Capitella teleta]
Length = 97
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++L GLP+ A + DFF+ +++ IH+ N + TG +VEF + D A+AK
Sbjct: 14 CVKLDGLPYLANNVAVKDFFEGLEIAQRGIHLMHNDRHQCTGIGYVEFVTSADCDKAVAK 73
Query: 232 DRMTLGSRYIELFPSSHEEMDEAL 255
++ +G R+I + + +M +++
Sbjct: 74 NKEYMGKRFILVEAITKRDMLDSM 97
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKN-NKFTGEAFCVLGYPLQVD 109
P F V+L GLP+ V V +FF GL+I + +H + ++ TG + D
Sbjct: 9 PEKFYCVKLDGLPYLANNVAVKDFFEGLEIAQRGIHLMHNDRHQCTGIGYVEFVTSADCD 68
Query: 110 FALQRNRQNMGRRYVEV 126
A+ +N++ MG+R++ V
Sbjct: 69 KAVAKNKEYMGKRFILV 85
>gi|85001419|ref|XP_955428.1| RNA-binding protein [Theileria annulata strain Ankara]
gi|65303574|emb|CAI75952.1| RNA-binding protein, putative [Theileria annulata]
Length = 959
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 121 RRYVEVFRSKRQEYYKA--IANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL 178
R+ VE + E +K+ I +SD++ S + +P G S + +L ++G+
Sbjct: 131 RKIVEAVTKETSEEHKSKQIQKFISDIQYVSKRKKLPSPP----GIYSPSYDALLYIKGI 186
Query: 179 PFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAKDRMTLG 237
PF A + D+ D+ K++ + S+ N +G TG+A+V N K A + T+G
Sbjct: 187 PFKATEKDVFDWLKNYDVV--SVVFIKNENGFFTGDAYVRCVNIGVRDKVAKEMENKTIG 244
Query: 238 SRYIELFPSSHEEMDEALSRG 258
RYI++F S E G
Sbjct: 245 GRYIQVFRVSENAYLEYYHSG 265
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 42 NPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAF- 99
+PP Y P ++ ++G+PF TE DV ++ D+V V+F+ ++N FTG+A+
Sbjct: 168 SPPGIY----SPSYDALLYIKGIPFKATEKDVFDWLKNYDVVSVVFIKNENGFFTGDAYV 223
Query: 100 -CVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY 134
CV ++ A + + +G RY++VFR Y
Sbjct: 224 RCV-NIGVRDKVAKEMENKTIGGRYIQVFRVSENAY 258
>gi|12856908|dbj|BAB30825.1| unnamed protein product [Mus musculus]
Length = 408
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 333 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 392
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 393 LNDR-PIGSRKVKL 405
>gi|189217714|ref|NP_001121298.1| uncharacterized protein LOC100158382 [Xenopus laevis]
gi|115528682|gb|AAI24951.1| LOC100158382 protein [Xenopus laevis]
Length = 473
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 15/202 (7%)
Query: 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQ 117
++ L GL D D+ EFF GL++ D+ V GEA+ V A++++
Sbjct: 4 IIHLEGLHTDADTTDIEEFFKGLNVSDIQIVRGER---GEAYIVFVSDNDAREAMKKSGS 60
Query: 118 NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG-----I 172
+ + + + S + E A +V R++ AK + +
Sbjct: 61 CIKNKRIVLSLSNKTEMLCAF-----EVYRKKVERTLEAAKQQSRKRKVEMFLAQPASLY 115
Query: 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
+ L G+ + I+DFF L+ + I DG TG FV+F NA + A+ +
Sbjct: 116 VHLTGISQDTKEAAIIDFFTS--LAVEQIIFCKGRDGSKTGNGFVKFTNAAHASEAVRFN 173
Query: 233 RMTLGSRYIELFPSSHEEMDEA 254
+ L ++ + + ++ E+ A
Sbjct: 174 QCLLNNKSLGVISATEEQWVNA 195
>gi|119627576|gb|EAX07171.1| hCG1641872, isoform CRA_b [Homo sapiens]
Length = 410
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 235
GLP A K DI + F L +HI M DGR TG+A VEFA E++ AA ++DR T
Sbjct: 198 GLPCKATKSDIYNLFSPSNLVR--VHIEMGPDGRVTGKADVEFATREEAVAATSRDRPT 254
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 209 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEE 250
GR +GEAF E + ED K A+ KDR ++G I +F S E
Sbjct: 35 GRQSGEAFAELGSEEDVKMALEKDRESMGHWRIAVFKSHRTE 76
>gi|159163875|pdb|2CQP|A Chain A, Solution Structure Of The Rna Binding Domain Of
Rna-Binding Protein 12
Length = 98
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 17 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 77 LNDR-PIGSRKVKL 89
>gi|392346882|ref|XP_003749658.1| PREDICTED: RNA-binding protein 12-like [Rattus norvegicus]
Length = 475
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 400 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 459
Query: 231 -KDRMTLGSRYIELF 244
DR +GSR ++L
Sbjct: 460 LNDR-PIGSRKVKLV 473
>gi|211827892|gb|AAH27810.2| Rbm12 protein [Mus musculus]
Length = 368
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
I++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 293 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 352
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 353 LNDR-PIGSRKVKL 365
>gi|320166417|gb|EFW43316.1| hypothetical protein CAOG_01360 [Capsaspora owczarzaki ATCC 30864]
Length = 986
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 87/218 (39%), Gaps = 36/218 (16%)
Query: 19 KRQRLID--QGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEF 76
KRQR D Q P F P + + P +VS L F TE +
Sbjct: 660 KRQRDSDDAQAPRF-TLPEKHAHDVSKDPVTVFVS-----------NLDFKATEEMIRSQ 707
Query: 77 FHGL-DIVDVLFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEY 134
F + +IVDV V K + G F P AL +RQ + R + Y
Sbjct: 708 FEQIGNIVDVRLVRKPTGRSRGYGFVEFSSPEAAQKALALDRQPVLNRPM---------Y 758
Query: 135 YKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF 194
++ D G +P R V L +R L +DD++ F+ F
Sbjct: 759 VSPSVDKPKDGDGPAPSRY----------AQDGVDPKTLFVRNLSSLCRRDDLVTTFEKF 808
Query: 195 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKD 232
D + +T + DGR TG A+VEFAN ED+K A+A D
Sbjct: 809 AKVVD-VRMTRHRDGRFTGRAYVEFANEEDAKLALAAD 845
>gi|158428444|pdb|2EK6|A Chain A, Crystal Structure Of Human Rna-Binding Protein 12
gi|158428445|pdb|2EK6|B Chain B, Crystal Structure Of Human Rna-Binding Protein 12
gi|158428446|pdb|2EK6|C Chain C, Crystal Structure Of Human Rna-Binding Protein 12
gi|158428447|pdb|2EK6|D Chain D, Crystal Structure Of Human Rna-Binding Protein 12
Length = 95
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA- 230
+++++ +PF+ D+I+DFF + + S+ + N G PTGEA V F + +++ AA+
Sbjct: 17 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76
Query: 231 -KDRMTLGSRYIEL 243
DR +GSR ++L
Sbjct: 77 LNDR-PIGSRKVKL 89
>gi|159468195|ref|XP_001692268.1| hypothetical protein CHLREDRAFT_189395 [Chlamydomonas reinhardtii]
gi|158278454|gb|EDP04218.1| predicted protein [Chlamydomonas reinhardtii]
Length = 913
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 184 KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 243
+DDI FF + L I DGRP+G AF EF + E++ A++K+ +G RY+ L
Sbjct: 631 EDDIRQFFAPYDL--KGISFVYEPDGRPSGLAFAEFVSKEEALKALSKNGEYIGQRYVRL 688
Query: 244 FPSSHEEMDEALSRG 258
EM+E + G
Sbjct: 689 LHVPRAEMEEQVRLG 703
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 36/54 (66%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDS 225
+++RGLP+ + +I+ FF+ + D++ I ++ GRP+GEA++ F N +++
Sbjct: 817 TIKIRGLPYGSSPSEILAFFQTYHFLPDTLQIGLDQLGRPSGEAWLSFTNPQEA 870
>gi|324497690|gb|ADY39495.1| putative RNA-binding protein [Hottentotta judaicus]
Length = 98
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 195 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-KDRMTLGSRYIELF 244
+LS + I + N DGRP GEA V F + D++ A+ K+R +G+RYIELF
Sbjct: 46 MLSPECIQLQRNGDGRPNGEALVTFPSRADAERAIQEKNRHNIGNRYIELF 96
>gi|349803597|gb|AEQ17271.1| putative rna binding motif protein 12 [Pipa carvalhoi]
Length = 77
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231
++RL+GLP AG DI FF + + +HI G GEAF+ FA ED++ M +
Sbjct: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIV----GGELGEAFIVFATDEDARLGMMR 59
Query: 232 DRMTLGSRYIELFPSS 247
T+ + L SS
Sbjct: 60 TGGTIKGSKVSLLLSS 75
>gi|256071585|ref|XP_002572120.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|350645121|emb|CCD60182.1| heterogeneous nuclear ribonucleoprotein-related [Schistosoma
mansoni]
Length = 1068
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 195 VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEM 251
+ +E I++ + D RPTG+AF+ F N + A+ + + LG RY+ELF +S EM
Sbjct: 481 MFNEQGIYLVVYPDQRPTGDAFILFCNDHIATKALIRHKDYLGDRYVELFKASPSEM 537
>gi|68072615|ref|XP_678221.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56498618|emb|CAH97479.1| conserved hypothetical protein [Plasmodium berghei]
Length = 162
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 142 VSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS--ED 199
+ ++RG S + I K V+ ++LRGLPF +D+I FF F LS ++
Sbjct: 37 LKNIRGFSEYGKIEEDK---------VNLPRIKLRGLPFDVSEDEIKKFFSAFKLSNQKN 87
Query: 200 SIHITMNSDGRPTGEAFVEFANAEDSKAA 228
IHI +PTG A+V F +AE+++ A
Sbjct: 88 PIHIIKGIKDKPTGHAYVYFDDAEEARNA 116
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,482,676,314
Number of Sequences: 23463169
Number of extensions: 203719467
Number of successful extensions: 483160
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 762
Number of HSP's that attempted gapping in prelim test: 472433
Number of HSP's gapped (non-prelim): 6029
length of query: 259
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 120
effective length of database: 9,097,814,876
effective search space: 1091737785120
effective search space used: 1091737785120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)