Query 025001
Match_columns 259
No_of_seqs 287 out of 1709
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:10:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 9.7E-33 2.1E-37 242.1 20.4 164 53-249 104-275 (346)
2 KOG4211 Splicing factor hnRNP- 100.0 4.2E-32 9.1E-37 237.0 16.8 182 53-255 7-188 (510)
3 KOG0117 Heterogeneous nuclear 100.0 1.9E-31 4.2E-36 230.1 19.3 211 26-254 63-336 (506)
4 TIGR01645 half-pint poly-U bin 100.0 2.9E-31 6.3E-36 244.6 20.2 173 54-248 105-283 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9E-30 2E-34 225.9 21.3 195 55-250 88-350 (352)
6 TIGR01622 SF-CC1 splicing fact 100.0 8E-30 1.7E-34 233.7 21.5 173 54-247 87-264 (457)
7 KOG1365 RNA-binding protein Fu 100.0 1.8E-30 3.8E-35 220.3 14.5 241 11-259 112-372 (508)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.2E-29 6.8E-34 222.4 21.1 159 56-247 3-169 (352)
9 TIGR01628 PABP-1234 polyadenyl 100.0 2.9E-28 6.2E-33 228.8 21.0 183 54-252 176-367 (562)
10 TIGR01628 PABP-1234 polyadenyl 100.0 2.7E-28 5.8E-33 229.0 18.8 158 58-246 2-164 (562)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 9.9E-28 2.1E-32 222.7 21.2 191 53-247 172-373 (509)
12 TIGR01648 hnRNP-R-Q heterogene 100.0 4.9E-28 1.1E-32 222.9 18.5 159 53-249 55-222 (578)
13 KOG0127 Nucleolar protein fibr 99.9 7.2E-27 1.6E-31 206.1 17.2 193 56-249 117-378 (678)
14 KOG0131 Splicing factor 3b, su 99.9 5.4E-27 1.2E-31 181.0 11.7 166 54-250 7-178 (203)
15 TIGR01648 hnRNP-R-Q heterogene 99.9 2.9E-26 6.2E-31 211.3 17.5 161 55-250 137-308 (578)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.8E-25 6.1E-30 204.5 21.7 189 54-248 273-479 (481)
17 KOG0127 Nucleolar protein fibr 99.9 4E-26 8.7E-31 201.5 14.9 186 57-250 6-197 (678)
18 KOG0148 Apoptosis-promoting RN 99.9 1.2E-25 2.5E-30 183.4 16.1 171 56-249 62-238 (321)
19 KOG0144 RNA-binding protein CU 99.9 1.9E-26 4.1E-31 198.5 11.1 165 55-251 33-208 (510)
20 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.5E-25 9.8E-30 203.1 20.2 166 56-249 2-174 (481)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.4E-24 3.1E-29 201.6 21.1 194 54-252 293-505 (509)
22 KOG0145 RNA-binding protein EL 99.9 1.7E-24 3.8E-29 175.7 15.4 193 54-247 125-356 (360)
23 KOG4205 RNA-binding protein mu 99.9 4E-25 8.6E-30 189.1 8.0 174 55-255 5-182 (311)
24 TIGR01622 SF-CC1 splicing fact 99.9 6.5E-23 1.4E-27 188.1 22.2 196 56-255 186-454 (457)
25 KOG4211 Splicing factor hnRNP- 99.9 5.2E-23 1.1E-27 180.3 17.2 193 54-248 101-357 (510)
26 KOG0124 Polypyrimidine tract-b 99.9 1.3E-23 2.8E-28 177.8 9.0 165 56-246 113-287 (544)
27 KOG0145 RNA-binding protein EL 99.9 1E-22 2.2E-27 165.5 13.8 161 54-247 39-207 (360)
28 KOG0110 RNA-binding protein (R 99.9 7.9E-23 1.7E-27 185.8 12.0 176 56-255 515-699 (725)
29 KOG0123 Polyadenylate-binding 99.9 6.3E-22 1.4E-26 174.9 16.7 151 57-252 2-156 (369)
30 KOG1365 RNA-binding protein Fu 99.9 5.2E-22 1.1E-26 169.0 10.9 226 16-258 20-252 (508)
31 KOG0109 RNA-binding protein LA 99.9 5.1E-22 1.1E-26 163.7 10.0 143 58-248 4-149 (346)
32 KOG0147 Transcriptional coacti 99.9 7.1E-22 1.5E-26 175.2 9.1 175 54-247 177-356 (549)
33 KOG0123 Polyadenylate-binding 99.9 1.7E-20 3.6E-25 165.9 15.1 165 58-249 78-246 (369)
34 KOG0105 Alternative splicing f 99.8 2.3E-18 5E-23 133.6 13.9 167 54-237 4-176 (241)
35 KOG4212 RNA-binding protein hn 99.8 1.7E-17 3.6E-22 143.8 17.8 191 55-246 43-291 (608)
36 TIGR01645 half-pint poly-U bin 99.8 7.5E-17 1.6E-21 149.5 22.8 76 55-130 203-282 (612)
37 KOG0148 Apoptosis-promoting RN 99.8 2.1E-18 4.5E-23 141.2 10.5 136 54-250 4-143 (321)
38 KOG0146 RNA-binding protein ET 99.8 5.5E-18 1.2E-22 138.5 11.6 82 168-250 283-366 (371)
39 PLN03134 glycine-rich RNA-bind 99.7 9.3E-18 2E-22 130.0 10.6 81 168-249 32-114 (144)
40 KOG0144 RNA-binding protein CU 99.7 4.3E-17 9.4E-22 141.1 10.0 79 168-247 422-502 (510)
41 KOG0110 RNA-binding protein (R 99.7 1.8E-16 3.9E-21 144.7 13.5 191 53-247 382-596 (725)
42 KOG0147 Transcriptional coacti 99.7 2.4E-16 5.3E-21 140.3 12.0 194 56-254 278-533 (549)
43 PF00076 RRM_1: RNA recognitio 99.7 1.6E-16 3.4E-21 107.6 8.2 69 173-242 1-70 (70)
44 KOG1548 Transcription elongati 99.7 8.3E-15 1.8E-19 123.9 20.2 187 53-247 131-350 (382)
45 KOG4206 Spliceosomal protein s 99.7 4.5E-15 9.7E-20 119.3 16.5 186 56-247 9-220 (221)
46 PLN03134 glycine-rich RNA-bind 99.7 8.2E-16 1.8E-20 119.2 11.0 78 53-130 31-112 (144)
47 PF14259 RRM_6: RNA recognitio 99.7 5.2E-16 1.1E-20 105.4 8.6 69 173-242 1-70 (70)
48 KOG4307 RNA binding protein RB 99.7 3.5E-16 7.6E-21 142.2 9.4 198 54-252 309-517 (944)
49 KOG0106 Alternative splicing f 99.6 5.8E-16 1.3E-20 125.4 9.2 167 57-249 2-171 (216)
50 KOG0125 Ataxin 2-binding prote 99.6 1.5E-15 3.3E-20 127.5 10.0 83 167-251 93-176 (376)
51 TIGR01659 sex-lethal sex-letha 99.6 2.1E-15 4.5E-20 132.8 10.6 81 167-248 104-186 (346)
52 PLN03120 nucleic acid binding 99.6 2.7E-15 5.9E-20 124.6 10.0 75 170-247 4-78 (260)
53 PF00076 RRM_1: RNA recognitio 99.6 5.5E-15 1.2E-19 100.0 8.7 67 59-125 1-70 (70)
54 KOG1457 RNA binding protein (c 99.6 6.3E-14 1.4E-18 112.1 15.3 181 52-236 30-273 (284)
55 KOG0149 Predicted RNA-binding 99.6 2.4E-15 5.3E-20 121.2 6.4 75 56-130 12-89 (247)
56 KOG0149 Predicted RNA-binding 99.6 2.9E-15 6.2E-20 120.8 6.7 81 168-248 10-90 (247)
57 KOG0122 Translation initiation 99.6 1.2E-14 2.6E-19 117.7 8.8 81 168-249 187-269 (270)
58 PF14259 RRM_6: RNA recognitio 99.6 2.5E-14 5.3E-19 97.1 8.9 67 59-125 1-70 (70)
59 PLN03121 nucleic acid binding 99.6 2.1E-14 4.6E-19 117.5 10.1 76 169-247 4-79 (243)
60 KOG0121 Nuclear cap-binding pr 99.6 9.4E-15 2E-19 107.1 6.5 75 54-128 34-112 (153)
61 PLN03120 nucleic acid binding 99.5 2.7E-14 5.8E-19 118.7 9.5 74 56-130 4-78 (260)
62 KOG0120 Splicing factor U2AF, 99.5 2.1E-14 4.4E-19 129.3 8.6 187 53-250 172-370 (500)
63 KOG0121 Nuclear cap-binding pr 99.5 3.7E-14 8.1E-19 104.0 7.0 77 168-245 34-112 (153)
64 smart00362 RRM_2 RNA recogniti 99.5 1.3E-13 2.9E-18 92.7 8.6 71 172-244 1-72 (72)
65 KOG0114 Predicted RNA-binding 99.5 5.6E-13 1.2E-17 94.3 11.3 84 168-254 16-100 (124)
66 PLN03121 nucleic acid binding 99.5 2E-13 4.4E-18 111.8 9.7 75 55-130 4-79 (243)
67 COG0724 RNA-binding proteins ( 99.5 9E-13 2E-17 111.5 14.1 164 56-230 115-285 (306)
68 KOG4307 RNA binding protein RB 99.5 3E-12 6.4E-17 117.0 16.7 75 171-245 868-943 (944)
69 PLN03213 repressor of silencin 99.5 5.1E-13 1.1E-17 117.9 11.0 79 168-250 8-89 (759)
70 KOG0125 Ataxin 2-binding prote 99.4 4.4E-13 9.5E-18 112.8 9.4 82 51-132 91-174 (376)
71 KOG0107 Alternative splicing f 99.4 2.1E-13 4.5E-18 105.3 6.9 74 55-130 9-83 (195)
72 KOG0113 U1 small nuclear ribon 99.4 5.9E-13 1.3E-17 110.7 9.7 79 168-247 99-179 (335)
73 KOG4207 Predicted splicing fac 99.4 2.7E-13 5.9E-18 107.3 6.5 80 167-247 10-91 (256)
74 KOG0122 Translation initiation 99.4 1.2E-12 2.5E-17 106.2 10.3 78 53-130 186-267 (270)
75 smart00360 RRM RNA recognition 99.4 9.1E-13 2E-17 88.2 8.3 68 175-243 1-70 (71)
76 cd00590 RRM RRM (RNA recogniti 99.4 1.6E-12 3.4E-17 87.9 9.5 73 172-245 1-74 (74)
77 KOG0131 Splicing factor 3b, su 99.4 2.3E-13 5.1E-18 105.7 5.7 79 168-247 7-87 (203)
78 KOG0107 Alternative splicing f 99.4 9.6E-13 2.1E-17 101.7 7.8 76 169-249 9-85 (195)
79 KOG0130 RNA-binding protein RB 99.4 7.8E-13 1.7E-17 98.0 7.0 81 165-246 67-149 (170)
80 KOG0114 Predicted RNA-binding 99.4 3.7E-12 8.1E-17 90.2 9.9 81 53-134 15-97 (124)
81 COG0724 RNA-binding proteins ( 99.4 1.7E-12 3.7E-17 109.8 9.6 77 170-247 115-193 (306)
82 KOG0120 Splicing factor U2AF, 99.4 4.4E-12 9.5E-17 114.4 11.9 191 53-252 286-495 (500)
83 KOG0126 Predicted RNA-binding 99.4 5.7E-14 1.2E-18 109.0 -0.1 75 169-244 34-110 (219)
84 KOG1190 Polypyrimidine tract-b 99.4 1.8E-11 4E-16 105.9 15.2 178 56-248 297-490 (492)
85 KOG0113 U1 small nuclear ribon 99.4 2.3E-12 5E-17 107.3 9.1 75 53-127 98-176 (335)
86 smart00362 RRM_2 RNA recogniti 99.4 5.1E-12 1.1E-16 84.9 8.6 69 58-126 1-71 (72)
87 KOG0108 mRNA cleavage and poly 99.4 2.2E-12 4.7E-17 115.6 8.5 79 171-250 19-99 (435)
88 KOG4212 RNA-binding protein hn 99.3 5.3E-12 1.1E-16 110.0 10.1 85 168-253 42-128 (608)
89 PLN03213 repressor of silencin 99.3 4.1E-12 9E-17 112.2 9.4 75 55-131 9-87 (759)
90 KOG0117 Heterogeneous nuclear 99.3 8.3E-12 1.8E-16 109.1 10.3 78 168-246 81-161 (506)
91 KOG0111 Cyclophilin-type pepti 99.3 7.9E-13 1.7E-17 105.6 3.6 84 168-252 8-93 (298)
92 KOG0126 Predicted RNA-binding 99.3 6E-13 1.3E-17 103.4 0.2 75 55-129 34-112 (219)
93 KOG0129 Predicted RNA-binding 99.3 1.3E-10 2.8E-15 103.6 14.7 181 51-246 254-451 (520)
94 smart00361 RRM_1 RNA recogniti 99.3 2.1E-11 4.6E-16 82.8 7.6 59 184-243 2-69 (70)
95 KOG0128 RNA-binding protein SA 99.3 3.5E-13 7.7E-18 125.6 -2.4 145 55-248 666-814 (881)
96 cd00590 RRM RRM (RNA recogniti 99.2 7.2E-11 1.6E-15 79.6 9.0 70 58-127 1-73 (74)
97 smart00360 RRM RNA recognition 99.2 4.4E-11 9.5E-16 79.9 7.5 66 61-126 1-70 (71)
98 KOG4207 Predicted splicing fac 99.2 2E-11 4.2E-16 96.9 5.8 77 53-129 10-90 (256)
99 KOG0105 Alternative splicing f 99.2 4.5E-11 9.8E-16 93.3 6.7 77 168-247 4-81 (241)
100 KOG0108 mRNA cleavage and poly 99.2 5.7E-11 1.2E-15 106.6 8.0 75 57-131 19-97 (435)
101 PF13893 RRM_5: RNA recognitio 99.2 1E-10 2.2E-15 75.7 7.0 55 187-246 1-56 (56)
102 KOG0226 RNA-binding proteins [ 99.1 8.7E-11 1.9E-15 96.0 6.1 168 56-250 96-271 (290)
103 KOG0124 Polypyrimidine tract-b 99.1 4.5E-11 9.8E-16 102.2 4.6 75 170-245 113-189 (544)
104 KOG4454 RNA binding protein (R 99.1 2.1E-11 4.6E-16 97.5 1.1 136 53-235 6-149 (267)
105 KOG0146 RNA-binding protein ET 99.1 2.7E-10 5.8E-15 93.8 7.1 81 169-250 18-102 (371)
106 KOG4210 Nuclear localization s 99.1 1.7E-10 3.7E-15 98.9 4.9 171 55-248 87-263 (285)
107 KOG0130 RNA-binding protein RB 99.0 3.4E-10 7.4E-15 84.0 5.6 75 56-130 72-150 (170)
108 KOG4208 Nucleolar RNA-binding 99.0 9.4E-10 2E-14 87.5 8.4 82 168-249 47-130 (214)
109 smart00361 RRM_1 RNA recogniti 99.0 9.8E-10 2.1E-14 74.5 7.0 58 69-126 1-69 (70)
110 KOG0111 Cyclophilin-type pepti 99.0 2.9E-10 6.2E-15 91.1 4.5 78 54-131 8-89 (298)
111 KOG0533 RRM motif-containing p 99.0 1.7E-09 3.7E-14 89.8 8.1 84 168-252 81-165 (243)
112 KOG0109 RNA-binding protein LA 99.0 7.7E-10 1.7E-14 92.1 4.8 71 171-249 3-74 (346)
113 KOG4205 RNA-binding protein mu 99.0 3.4E-10 7.5E-15 97.5 2.8 83 169-252 5-88 (311)
114 KOG1190 Polypyrimidine tract-b 98.9 4.1E-08 8.9E-13 85.4 14.4 195 50-251 144-375 (492)
115 KOG4206 Spliceosomal protein s 98.9 5.1E-09 1.1E-13 84.6 7.5 78 169-249 8-90 (221)
116 PF13893 RRM_5: RNA recognitio 98.9 1E-08 2.3E-13 66.2 7.2 53 73-128 1-55 (56)
117 KOG1456 Heterogeneous nuclear 98.9 1.4E-07 3E-12 81.3 15.8 163 53-249 28-199 (494)
118 KOG4208 Nucleolar RNA-binding 98.8 7.7E-09 1.7E-13 82.3 6.8 77 56-132 49-130 (214)
119 KOG0153 Predicted RNA-binding 98.8 1.1E-08 2.4E-13 87.3 7.6 75 168-248 226-302 (377)
120 KOG1548 Transcription elongati 98.8 2.6E-08 5.6E-13 85.0 7.7 79 169-247 133-219 (382)
121 KOG1456 Heterogeneous nuclear 98.8 9.6E-07 2.1E-11 76.2 17.0 178 54-238 285-474 (494)
122 KOG0132 RNA polymerase II C-te 98.7 2.7E-08 5.8E-13 92.7 7.6 78 168-251 419-497 (894)
123 KOG0116 RasGAP SH3 binding pro 98.7 3.4E-08 7.3E-13 88.4 7.7 77 169-246 287-364 (419)
124 KOG0116 RasGAP SH3 binding pro 98.7 3.4E-08 7.3E-13 88.4 7.5 74 55-128 287-363 (419)
125 KOG4209 Splicing factor RNPS1, 98.7 2.7E-08 5.8E-13 82.8 6.3 78 168-246 99-177 (231)
126 KOG0415 Predicted peptidyl pro 98.7 3.6E-08 7.8E-13 84.3 6.8 81 166-247 235-317 (479)
127 KOG4661 Hsp27-ERE-TATA-binding 98.7 8.1E-08 1.7E-12 86.8 9.4 80 168-248 403-484 (940)
128 KOG0132 RNA polymerase II C-te 98.7 4.5E-08 9.8E-13 91.2 7.2 71 56-130 421-493 (894)
129 KOG0533 RRM motif-containing p 98.7 8.9E-08 1.9E-12 79.6 7.7 76 56-131 83-161 (243)
130 PF04059 RRM_2: RNA recognitio 98.5 1.2E-06 2.5E-11 62.8 9.8 82 171-253 2-91 (97)
131 KOG4454 RNA binding protein (R 98.5 4.4E-08 9.5E-13 78.7 2.0 78 168-247 7-85 (267)
132 KOG0226 RNA-binding proteins [ 98.5 1.3E-07 2.8E-12 77.6 4.3 81 53-133 187-271 (290)
133 KOG1457 RNA binding protein (c 98.5 1E-06 2.3E-11 71.1 8.5 81 168-249 32-118 (284)
134 KOG0112 Large RNA-binding prot 98.4 1.9E-07 4E-12 88.4 3.9 153 55-247 371-529 (975)
135 KOG0153 Predicted RNA-binding 98.4 8.1E-07 1.8E-11 76.0 7.2 72 56-131 228-302 (377)
136 KOG0415 Predicted peptidyl pro 98.4 5.7E-07 1.2E-11 77.1 5.9 75 55-129 238-316 (479)
137 KOG4209 Splicing factor RNPS1, 98.4 7.3E-07 1.6E-11 74.2 6.1 76 54-129 99-177 (231)
138 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.7E-06 3.6E-11 78.5 7.5 76 56-131 405-484 (940)
139 PF04059 RRM_2: RNA recognitio 98.3 4.4E-06 9.5E-11 59.9 8.1 63 57-119 2-70 (97)
140 PF08777 RRM_3: RNA binding mo 98.2 5.5E-06 1.2E-10 60.6 7.4 78 171-254 2-85 (105)
141 KOG0106 Alternative splicing f 98.2 1.2E-06 2.7E-11 71.4 4.1 69 172-248 3-72 (216)
142 KOG4660 Protein Mei2, essentia 98.2 1.5E-06 3.3E-11 78.6 4.6 71 167-242 72-143 (549)
143 KOG0128 RNA-binding protein SA 98.2 7E-08 1.5E-12 90.8 -4.4 166 55-243 570-741 (881)
144 KOG1995 Conserved Zn-finger pr 98.1 3.2E-06 6.9E-11 72.8 4.6 83 167-249 63-154 (351)
145 PF11608 Limkain-b1: Limkain b 98.1 1.9E-05 4.2E-10 54.2 7.3 69 171-248 3-76 (90)
146 KOG4660 Protein Mei2, essentia 97.9 1E-05 2.3E-10 73.3 4.8 69 54-125 73-143 (549)
147 KOG4676 Splicing factor, argin 97.9 1.1E-05 2.3E-10 70.2 4.6 184 58-245 9-222 (479)
148 KOG0151 Predicted splicing reg 97.9 3E-05 6.4E-10 72.2 7.5 79 168-247 172-255 (877)
149 KOG2193 IGF-II mRNA-binding pr 97.9 2.2E-06 4.7E-11 75.2 -0.5 152 58-252 3-160 (584)
150 KOG0151 Predicted splicing reg 97.8 6.7E-05 1.5E-09 69.9 8.3 77 53-129 171-254 (877)
151 KOG1995 Conserved Zn-finger pr 97.8 2.7E-05 5.8E-10 67.2 4.2 80 53-132 63-154 (351)
152 PF05172 Nup35_RRM: Nup53/35/4 97.7 9.9E-05 2.2E-09 53.2 5.7 78 169-247 5-90 (100)
153 PF08777 RRM_3: RNA binding mo 97.7 0.00013 2.8E-09 53.3 6.1 71 56-130 1-78 (105)
154 PF11608 Limkain-b1: Limkain b 97.7 7E-05 1.5E-09 51.5 4.3 65 57-129 3-74 (90)
155 COG5175 MOT2 Transcriptional r 97.6 0.00029 6.3E-09 60.5 8.4 81 169-250 113-204 (480)
156 KOG4849 mRNA cleavage factor I 97.4 0.00025 5.4E-09 61.1 5.6 82 168-249 78-162 (498)
157 KOG4849 mRNA cleavage factor I 97.4 0.00016 3.4E-09 62.3 4.0 77 55-131 79-161 (498)
158 KOG4210 Nuclear localization s 97.4 0.00012 2.6E-09 63.0 2.7 74 56-129 184-261 (285)
159 KOG0115 RNA-binding protein p5 97.3 0.0009 1.9E-08 55.5 6.9 60 171-231 32-91 (275)
160 PF08675 RNA_bind: RNA binding 97.3 0.0018 4E-08 44.5 7.2 57 53-115 6-62 (87)
161 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00091 2E-08 42.4 4.5 52 171-229 2-53 (53)
162 KOG2314 Translation initiation 97.1 0.0016 3.4E-08 59.6 7.0 84 168-254 56-147 (698)
163 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0036 7.7E-08 45.2 7.3 71 56-129 6-89 (100)
164 KOG1855 Predicted RNA-binding 97.1 0.00064 1.4E-08 60.1 4.1 64 168-232 229-306 (484)
165 PF08952 DUF1866: Domain of un 97.1 0.0021 4.6E-08 49.2 6.4 59 186-252 52-110 (146)
166 KOG3152 TBP-binding protein, a 97.1 0.0004 8.8E-09 57.5 2.7 71 169-240 73-157 (278)
167 PF10309 DUF2414: Protein of u 96.9 0.0057 1.2E-07 39.9 6.7 52 170-230 5-60 (62)
168 KOG2202 U2 snRNP splicing fact 96.9 0.00057 1.2E-08 56.6 2.1 69 185-254 83-153 (260)
169 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0024 5.2E-08 40.5 4.4 51 57-112 2-53 (53)
170 KOG0129 Predicted RNA-binding 96.8 0.0024 5.2E-08 57.9 5.9 62 53-114 367-432 (520)
171 PF10309 DUF2414: Protein of u 96.7 0.0095 2.1E-07 38.9 6.3 51 58-114 7-61 (62)
172 COG5175 MOT2 Transcriptional r 96.5 0.0074 1.6E-07 52.1 6.5 76 56-131 114-202 (480)
173 PF08675 RNA_bind: RNA binding 96.5 0.0096 2.1E-07 41.1 5.5 53 170-231 9-61 (87)
174 KOG4676 Splicing factor, argin 96.5 0.0055 1.2E-07 53.8 5.3 76 170-246 7-86 (479)
175 KOG0115 RNA-binding protein p5 96.1 0.0069 1.5E-07 50.3 3.7 70 57-126 32-108 (275)
176 KOG2314 Translation initiation 96.0 0.025 5.3E-07 52.1 7.1 77 53-129 55-141 (698)
177 KOG1855 Predicted RNA-binding 95.9 0.013 2.9E-07 52.0 4.9 64 54-117 229-308 (484)
178 KOG4285 Mitotic phosphoprotein 95.9 0.035 7.7E-07 47.3 7.2 80 170-256 197-277 (350)
179 PF08952 DUF1866: Domain of un 95.7 0.042 9.1E-07 42.2 6.4 79 56-141 27-115 (146)
180 KOG1996 mRNA splicing factor [ 95.4 0.063 1.4E-06 45.7 6.9 79 172-251 283-369 (378)
181 KOG2416 Acinus (induces apopto 95.3 0.039 8.5E-07 51.1 5.9 84 166-255 440-528 (718)
182 KOG3152 TBP-binding protein, a 95.1 0.013 2.7E-07 48.8 2.1 68 56-123 74-157 (278)
183 KOG2193 IGF-II mRNA-binding pr 94.9 0.054 1.2E-06 48.3 5.4 75 172-252 3-79 (584)
184 PF11767 SET_assoc: Histone ly 94.4 0.27 5.8E-06 32.6 6.6 54 181-243 11-65 (66)
185 KOG2591 c-Mpl binding protein, 94.3 0.087 1.9E-06 48.5 5.4 66 55-125 174-245 (684)
186 PF07576 BRAP2: BRCA1-associat 94.1 0.89 1.9E-05 33.4 9.4 68 170-238 13-81 (110)
187 KOG1996 mRNA splicing factor [ 93.5 0.22 4.8E-06 42.4 6.1 65 70-134 300-369 (378)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 93.1 0.13 2.7E-06 41.3 3.9 68 169-236 6-80 (176)
189 KOG4285 Mitotic phosphoprotein 93.1 0.27 5.9E-06 42.0 6.0 77 56-137 197-275 (350)
190 PF07292 NID: Nmi/IFP 35 domai 93.0 0.094 2E-06 36.8 2.6 71 98-191 1-73 (88)
191 KOG2202 U2 snRNP splicing fact 92.6 0.073 1.6E-06 44.4 1.9 62 79-140 92-156 (260)
192 KOG0112 Large RNA-binding prot 92.4 0.032 7E-07 54.0 -0.4 78 167-245 369-447 (975)
193 KOG2068 MOT2 transcription fac 91.8 0.054 1.2E-06 46.9 0.2 78 170-248 77-162 (327)
194 KOG2416 Acinus (induces apopto 91.7 0.33 7.1E-06 45.3 5.1 77 56-135 444-525 (718)
195 PF07576 BRAP2: BRCA1-associat 91.1 3.8 8.2E-05 30.1 9.4 65 56-120 13-80 (110)
196 KOG2591 c-Mpl binding protein, 91.0 0.51 1.1E-05 43.7 5.6 72 168-245 173-248 (684)
197 PF15023 DUF4523: Protein of u 90.8 0.89 1.9E-05 34.8 5.8 71 168-245 84-158 (166)
198 KOG2135 Proteins containing th 90.8 0.12 2.7E-06 46.7 1.5 73 170-248 372-445 (526)
199 KOG2253 U1 snRNP complex, subu 89.7 0.38 8.3E-06 45.4 3.8 71 166-245 36-107 (668)
200 PF15023 DUF4523: Protein of u 88.3 3.2 7E-05 31.8 7.2 70 53-127 83-157 (166)
201 PF03880 DbpA: DbpA RNA bindin 87.8 2.5 5.4E-05 28.5 5.9 60 179-246 10-74 (74)
202 PF03467 Smg4_UPF3: Smg-4/UPF3 87.4 0.71 1.5E-05 36.9 3.5 64 54-117 5-78 (176)
203 KOG2253 U1 snRNP complex, subu 86.9 0.52 1.1E-05 44.5 2.7 66 55-126 39-105 (668)
204 KOG0804 Cytoplasmic Zn-finger 86.4 2.8 6E-05 38.1 6.8 68 170-238 74-142 (493)
205 PF11767 SET_assoc: Histone ly 85.9 4.5 9.8E-05 26.7 6.1 50 66-121 10-60 (66)
206 PF03468 XS: XS domain; Inter 85.2 0.78 1.7E-05 34.0 2.5 58 58-116 10-78 (116)
207 PF04847 Calcipressin: Calcipr 85.1 3.3 7.1E-05 33.4 6.2 61 183-249 8-71 (184)
208 PF03468 XS: XS domain; Inter 84.8 0.93 2E-05 33.6 2.8 50 170-222 8-66 (116)
209 KOG2135 Proteins containing th 79.7 0.97 2.1E-05 41.1 1.4 72 55-130 371-444 (526)
210 KOG4483 Uncharacterized conser 79.0 4.7 0.0001 36.1 5.3 57 169-231 390-446 (528)
211 KOG0804 Cytoplasmic Zn-finger 76.2 13 0.00027 34.0 7.3 66 54-120 72-141 (493)
212 KOG4574 RNA-binding protein (c 71.9 2.4 5.2E-05 41.4 1.9 74 172-251 300-376 (1007)
213 KOG2068 MOT2 transcription fac 71.7 1.8 3.9E-05 37.7 0.9 71 56-126 77-157 (327)
214 KOG4483 Uncharacterized conser 70.0 8.5 0.00019 34.5 4.7 54 56-114 391-446 (528)
215 KOG4410 5-formyltetrahydrofola 69.1 15 0.00033 31.5 5.8 49 170-223 330-378 (396)
216 PF14111 DUF4283: Domain of un 66.2 2.9 6.3E-05 32.0 1.0 100 67-197 28-132 (153)
217 KOG2891 Surface glycoprotein [ 63.6 21 0.00047 30.5 5.7 102 97-205 77-195 (445)
218 PF04847 Calcipressin: Calcipr 62.4 21 0.00046 28.7 5.3 57 70-130 9-69 (184)
219 PF07292 NID: Nmi/IFP 35 domai 61.4 9.1 0.0002 26.9 2.6 32 215-246 1-34 (88)
220 PRK14548 50S ribosomal protein 59.4 29 0.00062 24.1 4.9 56 173-230 23-79 (84)
221 TIGR03636 L23_arch archaeal ri 56.8 37 0.0008 23.2 5.0 55 173-229 16-71 (77)
222 KOG4410 5-formyltetrahydrofola 56.5 23 0.0005 30.4 4.7 47 56-106 330-378 (396)
223 KOG3424 40S ribosomal protein 56.1 24 0.00052 26.1 4.1 47 180-227 33-84 (132)
224 KOG2318 Uncharacterized conser 53.3 43 0.00093 31.7 6.3 72 167-239 171-296 (650)
225 PF02714 DUF221: Domain of unk 53.3 29 0.00062 30.3 5.1 17 98-114 1-17 (325)
226 PF15513 DUF4651: Domain of un 47.3 40 0.00087 21.9 3.7 14 185-198 9-22 (62)
227 KOG4213 RNA-binding protein La 46.9 17 0.00036 29.1 2.3 63 56-122 111-177 (205)
228 PRK01178 rps24e 30S ribosomal 46.2 76 0.0016 22.8 5.4 47 180-227 29-80 (99)
229 PF14893 PNMA: PNMA 44.4 14 0.0003 32.7 1.7 53 54-107 16-74 (331)
230 KOG4008 rRNA processing protei 43.0 21 0.00045 29.8 2.4 31 168-198 38-68 (261)
231 cd04908 ACT_Bt0572_1 N-termina 41.9 91 0.002 19.8 6.2 50 183-235 14-63 (66)
232 PF10567 Nab6_mRNP_bdg: RNA-re 41.9 53 0.0011 28.4 4.7 81 166-247 11-106 (309)
233 KOG4008 rRNA processing protei 41.4 20 0.00044 29.8 2.1 34 52-85 36-69 (261)
234 KOG1295 Nonsense-mediated deca 37.4 39 0.00085 30.2 3.4 65 170-234 7-75 (376)
235 PF13046 DUF3906: Protein of u 35.2 41 0.00089 22.0 2.3 35 66-100 28-63 (64)
236 KOG4365 Uncharacterized conser 33.9 9.1 0.0002 34.8 -1.1 79 172-252 5-85 (572)
237 PF01071 GARS_A: Phosphoribosy 32.3 70 0.0015 26.0 3.8 51 183-237 25-77 (194)
238 KOG4213 RNA-binding protein La 31.8 72 0.0016 25.6 3.7 65 171-241 112-179 (205)
239 PF09707 Cas_Cas2CT1978: CRISP 30.7 78 0.0017 22.1 3.4 47 56-102 25-71 (86)
240 PTZ00191 60S ribosomal protein 30.3 1.3E+02 0.0029 23.2 4.8 53 173-227 84-137 (145)
241 PF11411 DNA_ligase_IV: DNA li 30.1 35 0.00076 19.6 1.2 15 66-80 19-33 (36)
242 PF01282 Ribosomal_S24e: Ribos 29.9 1.1E+02 0.0023 21.2 4.0 47 180-227 11-62 (84)
243 PF08156 NOP5NT: NOP5NT (NUC12 29.7 23 0.00051 23.3 0.6 37 185-231 27-63 (67)
244 KOG4574 RNA-binding protein (c 28.7 33 0.00071 34.0 1.6 77 57-137 299-379 (1007)
245 COG2004 RPS24A Ribosomal prote 27.9 2.4E+02 0.0052 20.5 7.9 48 179-227 29-81 (107)
246 PF07530 PRE_C2HC: Associated 26.8 87 0.0019 20.7 3.0 60 185-246 2-62 (68)
247 PF14097 SpoVAE: Stage V sporu 26.1 2.1E+02 0.0046 22.7 5.4 21 106-126 10-30 (180)
248 PF05189 RTC_insert: RNA 3'-te 25.7 1.3E+02 0.0027 21.4 3.9 46 172-220 12-65 (103)
249 COG0030 KsgA Dimethyladenosine 25.2 98 0.0021 26.4 3.7 25 170-194 95-119 (259)
250 PF11823 DUF3343: Protein of u 24.6 1.2E+02 0.0026 20.0 3.4 18 214-231 3-20 (73)
251 KOG1295 Nonsense-mediated deca 23.2 1E+02 0.0022 27.7 3.5 58 56-113 7-70 (376)
252 smart00596 PRE_C2HC PRE_C2HC d 23.2 78 0.0017 21.1 2.1 60 185-246 2-62 (69)
253 PF10281 Ish1: Putative stress 22.3 76 0.0017 18.1 1.8 18 181-198 3-20 (38)
254 COG5470 Uncharacterized conser 22.1 2.1E+02 0.0046 20.3 4.3 42 187-229 25-70 (96)
255 KOG2295 C2H2 Zn-finger protein 21.8 15 0.00032 34.5 -2.0 59 55-113 230-294 (648)
256 COG3254 Uncharacterized conser 21.2 2.5E+02 0.0054 20.4 4.5 42 70-113 26-69 (105)
257 COG5193 LHP1 La protein, small 21.2 49 0.0011 29.9 1.2 60 54-113 172-244 (438)
258 PRK11558 putative ssRNA endonu 20.8 1.3E+02 0.0028 21.5 3.0 50 56-105 27-76 (97)
259 COG5193 LHP1 La protein, small 20.4 53 0.0011 29.7 1.2 60 170-230 174-244 (438)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=9.7e-33 Score=242.14 Aligned_cols=164 Identities=18% Similarity=0.247 Sum_probs=140.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
....++|||+|||+++||++|+++|+.|+ |++|.|+ + .+++++|||||+|.++++|++||+ +++..+.++.|.|..
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34588999999999999999999999996 5567654 4 589999999999999999999996 788899999999965
Q ss_pred cchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-
Q 025001 129 SKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS- 207 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~- 207 (259)
+.... ......+|||+|||+++|+++|+++|++||.+. .+.|+.++
T Consensus 184 a~p~~--------------------------------~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~-~v~i~~d~~ 230 (346)
T TIGR01659 184 ARPGG--------------------------------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIV-QKNILRDKL 230 (346)
T ss_pred ccccc--------------------------------cccccceeEEeCCCCcccHHHHHHHHHhcCCEE-EEEEeecCC
Confidence 43110 012345799999999999999999999999886 78888877
Q ss_pred CCCCceEEEEEEcCHHHHHHHHHh-CCCccCC--eEEEEEeCCHH
Q 025001 208 DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS--RYIELFPSSHE 249 (259)
Q Consensus 208 ~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~g--r~i~V~~~~~~ 249 (259)
+|+++|||||+|.+.++|++||+. |+..|.+ ++|+|.++...
T Consensus 231 tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 231 TGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 899999999999999999999987 9998865 79999988654
No 2
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=100.00 E-value=4.2e-32 Score=237.04 Aligned_cols=182 Identities=38% Similarity=0.677 Sum_probs=159.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecchH
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQ 132 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~~ 132 (259)
......|.+++|||++|++||.+||+.|+|..+++...+|+.+|-|||+|.+.+|+++||+++...++.|+|+|+.+...
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 44566999999999999999999999999999887888999999999999999999999999999999999999998765
Q ss_pred HHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCc
Q 025001 133 EYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPT 212 (259)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~ 212 (259)
++...... ..........+|.+++||+.+|++||.+||+..-++...|.++.+..+++.
T Consensus 87 e~d~~~~~---------------------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~t 145 (510)
T KOG4211|consen 87 EADWVMRP---------------------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPT 145 (510)
T ss_pred cccccccC---------------------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcc
Confidence 54211110 001111456789999999999999999999999888877889999999999
Q ss_pred eEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCCHHHHHHHH
Q 025001 213 GEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255 (259)
Q Consensus 213 G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~~~~~~~~~ 255 (259)
|.|||+|++.+.|++||..|...|+.|.|+|+.++..|+..+.
T Consensus 146 GEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~~ 188 (510)
T KOG4211|consen 146 GEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRAA 188 (510)
T ss_pred cceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhhc
Confidence 9999999999999999999999999999999999999988764
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-31 Score=230.09 Aligned_cols=211 Identities=22% Similarity=0.295 Sum_probs=156.0
Q ss_pred cCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEe
Q 025001 26 QGPSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVL 102 (259)
Q Consensus 26 ~~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F 102 (259)
+++..|+.|| +.|..++ +...|.|||+.||.++.|+||..+|+..| |-+++|+ + .+|.++|||||+|
T Consensus 63 ~gqrk~ggPp---P~weg~~-------p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf 132 (506)
T KOG0117|consen 63 NGQRKYGGPP---PGWEGPP-------PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTF 132 (506)
T ss_pred ccccccCCCC---CcccCCC-------CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEe
Confidence 4577787766 2354444 56689999999999999999999999995 6678754 6 4999999999999
Q ss_pred CCHHHHHHHHH-hccccC-CCeEEEEEecch---------------HHHHHHHhhh---cc------------ccCC---
Q 025001 103 GYPLQVDFALQ-RNRQNM-GRRYVEVFRSKR---------------QEYYKAIANE---VS------------DVRG--- 147 (259)
Q Consensus 103 ~~~e~A~~Al~-~~~~~~-~~r~i~v~~~~~---------------~~~~~~~~~~---~~------------~~~~--- 147 (259)
.+.++|++||+ +|+..| .|+.|.|+.+.. .+..+.+..- +. .+||
T Consensus 133 ~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaF 212 (506)
T KOG0117|consen 133 CTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAF 212 (506)
T ss_pred ecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEE
Confidence 99999999997 666654 688888765431 2222222110 00 1111
Q ss_pred -----------------CCC-------CCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEE
Q 025001 148 -----------------GSP-------HRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203 (259)
Q Consensus 148 -----------------~~~-------~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i 203 (259)
.+. ....+.........+.....+.|||+||+.++|++.|+++|+.||.++ .|..
T Consensus 213 veYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ve-RVkk 291 (506)
T KOG0117|consen 213 VEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVE-RVKK 291 (506)
T ss_pred EEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceE-Eeec
Confidence 000 000111122223334556788999999999999999999999999886 6776
Q ss_pred eeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHHHH
Q 025001 204 TMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEA 254 (259)
Q Consensus 204 ~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~~~ 254 (259)
++| ||||+|.+.++|.+||+. |++.|+|..|+|.++++.+-++.
T Consensus 292 ~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 292 PRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred ccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 655 999999999999999988 99999999999999999875543
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=2.9e-31 Score=244.63 Aligned_cols=173 Identities=20% Similarity=0.272 Sum_probs=141.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
...|+|||+|||+++++++|+++|+.|| |.+|.++ + .+|+++|||||+|.+.++|++||+ +++..++||.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3478999999999999999999999996 4456554 5 489999999999999999999997 7888999999999543
Q ss_pred chHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-C
Q 025001 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D 208 (259)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~ 208 (259)
..... ..+ ............++|||+|||+++++++|+++|+.||.+. +++|..+. +
T Consensus 185 ~~~p~-------------a~~--------~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~-svrl~~D~~t 242 (612)
T TIGR01645 185 SNMPQ-------------AQP--------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV-KCQLARAPTG 242 (612)
T ss_pred ccccc-------------ccc--------ccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCee-EEEEEecCCC
Confidence 21000 000 0000011123457899999999999999999999999886 89999887 6
Q ss_pred CCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCH
Q 025001 209 GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248 (259)
Q Consensus 209 g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~ 248 (259)
|+++|||||+|.+.++|.+||+. |+..|+|+.|+|..+..
T Consensus 243 gksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 243 RGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred CCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 88999999999999999999988 99999999999987753
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=9e-30 Score=225.89 Aligned_cols=195 Identities=16% Similarity=0.200 Sum_probs=140.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCC--eEEEEEe
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGR--RYVEVFR 128 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~--r~i~v~~ 128 (259)
..++|||+|||.++++++|+++|+.|| ++.+.+. + .+|.++|||||+|.+.++|++||+ +++..+.+ +.|.|..
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467999999999999999999999996 5556544 3 478999999999999999999997 67777765 5677766
Q ss_pred cchHH------HHHHHhhhcc-c-cCCC-C---------C----------------------------------CCCCCc
Q 025001 129 SKRQE------YYKAIANEVS-D-VRGG-S---------P----------------------------------HRSIPR 156 (259)
Q Consensus 129 ~~~~~------~~~~~~~~~~-~-~~~~-~---------~----------------------------------~~~~~~ 156 (259)
+.... +......... . .+.. . + ....+.
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 53221 1000000000 0 0000 0 0 000000
Q ss_pred cC-----CC---CCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHH
Q 025001 157 AK-----SH---DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKA 227 (259)
Q Consensus 157 ~~-----~~---~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~ 227 (259)
.. .. .........+.+|||+|||+++++++|+++|++||.+. +|+|+.|. +|.++|||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~-~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ-NVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 00 00 00000123345799999999999999999999999886 79999988 89999999999999999999
Q ss_pred HHHh-CCCccCCeEEEEEeCCHHH
Q 025001 228 AMAK-DRMTLGSRYIELFPSSHEE 250 (259)
Q Consensus 228 Al~~-~~~~l~gr~i~V~~~~~~~ 250 (259)
||+. ||..|+||.|+|...+.++
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCC
Confidence 9987 9999999999999887654
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=8e-30 Score=233.74 Aligned_cols=173 Identities=22% Similarity=0.250 Sum_probs=142.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
.+.++|||+|||+++|+++|+++|+.|| |.+|.++ + .+|+++|||||+|.+.++|++||.+++..+.|+.|.|..+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 3478999999999999999999999996 5556654 4 48999999999999999999999999999999999996654
Q ss_pred hHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CC
Q 025001 131 RQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DG 209 (259)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g 209 (259)
........... ..........+|||+|||+.+|+++|+++|+.||.+. .|.++.+. +|
T Consensus 167 ~~~~~~~~~~~--------------------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~-~v~~~~d~~~g 225 (457)
T TIGR01622 167 AEKNRAAKAAT--------------------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIE-DVQLHRDPETG 225 (457)
T ss_pred hhhhhhhhccc--------------------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCC
Confidence 22111000000 0000112367999999999999999999999999886 78888877 57
Q ss_pred CCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 210 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 210 ~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
+++|||||+|.+.++|.+|++. ||..|.|+.|.|..+.
T Consensus 226 ~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 226 RSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred ccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 9999999999999999999987 9999999999999964
No 7
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=220.31 Aligned_cols=241 Identities=37% Similarity=0.603 Sum_probs=187.2
Q ss_pred CCcccchHHHHHHHhcCCC--CCCCCCCC--------CCccCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhcC-
Q 025001 11 ADGREMGAKRQRLIDQGPS--FYGTPPSS--------SFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHG- 79 (259)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~p~~--------~~~~~~~p~~~~~~~~~~~~~vfV~nLp~~~te~~L~~~F~~- 79 (259)
.++|+|+-+|++++..+.. .|...++. +.+.++.++ -...-.|.++||||++|+.|+.+||.+
T Consensus 112 ~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~fls------k~~qvivRmRGLPfdat~~dVv~FF~~~ 185 (508)
T KOG1365|consen 112 PEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLS------KENQVIVRMRGLPFDATALDVVEFFGPP 185 (508)
T ss_pred chhhhhhhHhhhhhccCCceeeeccCchhheEecCCccccCCCCCC------cccceEEEecCCCCCcchHHHHHhcCCC
Confidence 6899999999999987743 33443322 222222220 122558999999999999999999972
Q ss_pred C----CceEEEEec-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecchHHHHHHHhhhccccCCCCCC-CC
Q 025001 80 L----DIVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPH-RS 153 (259)
Q Consensus 80 ~----~iv~v~~~~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 153 (259)
| +.+.|.++. ++|+.+|-|||.|+.+++|+.||.++...|+.|+|++++++..++++.+..+.+..-.+... ..
T Consensus 186 cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~ 265 (508)
T KOG1365|consen 186 CPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPL 265 (508)
T ss_pred CcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCC
Confidence 2 345577664 59999999999999999999999999999999999999999999999988876543322110 00
Q ss_pred CCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCcc--ceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025001 154 IPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE--DSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231 (259)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~--~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~ 231 (259)
.+.... ..-.......||.+++|||++|.+||.+||..|.... ..|+++.+..|++.|.|||+|.+.++|..|..+
T Consensus 266 ~p~~p~--~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk 343 (508)
T KOG1365|consen 266 LPGGPA--RLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQK 343 (508)
T ss_pred CCCCcc--ccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHH
Confidence 110000 0011224478999999999999999999999997433 349999999999999999999999999999988
Q ss_pred -CCCccCCeEEEEEeCCHHHHHHHHHcCC
Q 025001 232 -DRMTLGSRYIELFPSSHEEMDEALSRGR 259 (259)
Q Consensus 232 -~~~~l~gr~i~V~~~~~~~~~~~~~~~r 259 (259)
|++.+.+|+|+|+.++.+||.+++++++
T Consensus 344 ~hk~~mk~RYiEvfp~S~eeln~vL~~g~ 372 (508)
T KOG1365|consen 344 CHKKLMKSRYIEVFPCSVEELNEVLSGGL 372 (508)
T ss_pred HHHhhcccceEEEeeccHHHHHHHHhcCc
Confidence 8888889999999999999999888753
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.2e-29 Score=222.40 Aligned_cols=159 Identities=16% Similarity=0.239 Sum_probs=135.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCc-eEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
.++|||+|||+++||++|+++|+.||. .+|.|+ + .+|+++|||||+|.+.++|++||+ +++..+.|+.|.|..+..
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 579999999999999999999999975 456654 4 489999999999999999999997 788889999999965431
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCC
Q 025001 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGR 210 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~ 210 (259)
. .......+|||+|||.++++++|+++|++||.+. .+.++.+. +|.
T Consensus 83 ~--------------------------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~~~ 129 (352)
T TIGR01661 83 S--------------------------------SDSIKGANLYVSGLPKTMTQHELESIFSPFGQII-TSRILSDNVTGL 129 (352)
T ss_pred c--------------------------------ccccccceEEECCccccCCHHHHHHHHhccCCEE-EEEEEecCCCCC
Confidence 1 0112355799999999999999999999999875 67777665 789
Q ss_pred CceEEEEEEcCHHHHHHHHHh-CCCccCC--eEEEEEeCC
Q 025001 211 PTGEAFVEFANAEDSKAAMAK-DRMTLGS--RYIELFPSS 247 (259)
Q Consensus 211 ~~G~afV~F~~~~~A~~Al~~-~~~~l~g--r~i~V~~~~ 247 (259)
++|||||+|.+.++|.+||+. ||..+.| +.|.|..+.
T Consensus 130 ~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~ 169 (352)
T TIGR01661 130 SKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFAN 169 (352)
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 999999999999999999987 9998877 678888764
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2.9e-28 Score=228.78 Aligned_cols=183 Identities=16% Similarity=0.251 Sum_probs=147.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCC----CeEEEE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMG----RRYVEV 126 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~----~r~i~v 126 (259)
...++|||+|||+++|+++|+++|+.|| |..+.++ +.+|+++|||||+|.+.++|.+|++ .++..+. ++.+.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 3467899999999999999999999996 5556554 6789999999999999999999997 6788888 999988
Q ss_pred EecchHHHHHHH-hhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEee
Q 025001 127 FRSKRQEYYKAI-ANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205 (259)
Q Consensus 127 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~ 205 (259)
..+..+.-.... ....... ...........+|||+|||+++|+++|+++|+.||.+. ++.++.
T Consensus 256 ~~a~~k~er~~~~~~~~~~~---------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~-~~~i~~ 319 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEEL---------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEIT-SAKVML 319 (562)
T ss_pred ecccChhhhHHHHHhhHHhh---------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeE-EEEEEE
Confidence 766433211100 0000000 00001123466899999999999999999999999886 899999
Q ss_pred CCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHH
Q 025001 206 NSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMD 252 (259)
Q Consensus 206 ~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~ 252 (259)
+.+|+++|||||+|.+.++|.+|+.. |+..|+|+.|.|.++..++..
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 99999999999999999999999987 999999999999999877644
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2.7e-28 Score=228.97 Aligned_cols=158 Identities=21% Similarity=0.322 Sum_probs=135.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchHH
Q 025001 58 VVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQE 133 (259)
Q Consensus 58 ~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~~ 133 (259)
+|||+|||+++||++|+++|++|| |++|.+. +. +++++|||||+|.+.++|++||+ +++..+.|+.|+|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999996 4567654 44 79999999999999999999997 56667999999997653211
Q ss_pred HHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCce
Q 025001 134 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213 (259)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G 213 (259)
. .......+|||+|||.++|+++|+++|+.||.+. +|.++.+.+|+++|
T Consensus 82 ~------------------------------~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~-~~~i~~~~~g~skg 130 (562)
T TIGR01628 82 S------------------------------LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNIL-SCKVATDENGKSRG 130 (562)
T ss_pred c------------------------------ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcc-eeEeeecCCCCccc
Confidence 0 0012345799999999999999999999999876 78999999999999
Q ss_pred EEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 214 EAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 214 ~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
||||+|.+.++|.+|++. |+..++|+.|.|...
T Consensus 131 ~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~ 164 (562)
T TIGR01628 131 YGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRF 164 (562)
T ss_pred EEEEEECCHHHHHHHHHHhcccEecCceEEEecc
Confidence 999999999999999987 999999999998654
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=9.9e-28 Score=222.69 Aligned_cols=191 Identities=16% Similarity=0.226 Sum_probs=135.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCC----Cc-----eEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGL----DI-----VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRY 123 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~----~i-----v~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~ 123 (259)
....++|||+|||+++|+++|++||.++ +. ...+.....++.+|||||+|.+.++|..||.+++..+.|+.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~ 251 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVF 251 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCce
Confidence 3457899999999999999999999864 10 01111112345679999999999999999999999999999
Q ss_pred EEEEecchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEE
Q 025001 124 VEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203 (259)
Q Consensus 124 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i 203 (259)
|.|..... +......... .....+.....................+|||+|||+.+|+++|+++|+.||.+. .+.|
T Consensus 252 l~v~r~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~~~~ 327 (509)
T TIGR01642 252 LKIRRPHD--YIPVPQITPE-VSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK-AFNL 327 (509)
T ss_pred eEecCccc--cCCccccCCC-CCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEE
Confidence 99854321 1000000000 000000000000000000011224567999999999999999999999999886 7888
Q ss_pred eeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 204 TMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 204 ~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
+.+. +|.++|||||+|.+.++|..||+. ||..|+|+.|.|..+.
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 8776 799999999999999999999987 9999999999998874
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=4.9e-28 Score=222.94 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=127.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEE-ecCCCCceeEEEEEeCCHHHHHHHHH-hccccC-CCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNM-GRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~-~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~-~~r~i~v~~ 128 (259)
+...|+|||+|||++++|++|+++|+.|+ |+++.| ++.+|+++|||||+|.+.++|++||+ +++..+ .++.|.|..
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 45579999999999999999999999996 556765 47899999999999999999999998 455555 467666532
Q ss_pred cchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeC--
Q 025001 129 SKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-- 206 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~-- 206 (259)
+ ...++|||+|||.++|+++|.++|++++.....+.+...
T Consensus 135 S--------------------------------------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~ 176 (578)
T TIGR01648 135 S--------------------------------------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAA 176 (578)
T ss_pred c--------------------------------------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecccc
Confidence 2 235689999999999999999999998632223333322
Q ss_pred CCCCCceEEEEEEcCHHHHHHHHHh-C-C-CccCCeEEEEEeCCHH
Q 025001 207 SDGRPTGEAFVEFANAEDSKAAMAK-D-R-MTLGSRYIELFPSSHE 249 (259)
Q Consensus 207 ~~g~~~G~afV~F~~~~~A~~Al~~-~-~-~~l~gr~i~V~~~~~~ 249 (259)
..++++|||||+|.++++|..|++. + + ..+.|+.|.|..+.++
T Consensus 177 ~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~ 222 (578)
T TIGR01648 177 DKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPE 222 (578)
T ss_pred ccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccc
Confidence 2578999999999999999999975 3 3 4688999999887664
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=7.2e-27 Score=206.15 Aligned_cols=193 Identities=21% Similarity=0.363 Sum_probs=145.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEec-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchH
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQ 132 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~ 132 (259)
.-.|.|+||||.|.+.||+.+|+.|| +++|.|.. .+|+-.|||||+|....+|.+||+ .|+..|+||+|.|.++..+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 56899999999999999999999996 67888764 588888999999999999999998 6788999999999887766
Q ss_pred HHHHHHhhhc-------------cc---cCCCC----------CCC---CC-----------------------CccCCC
Q 025001 133 EYYKAIANEV-------------SD---VRGGS----------PHR---SI-----------------------PRAKSH 160 (259)
Q Consensus 133 ~~~~~~~~~~-------------~~---~~~~~----------~~~---~~-----------------------~~~~~~ 160 (259)
+.+...+.+. .. ..+.. ... .. +.....
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 5444322100 00 00000 000 00 000000
Q ss_pred C-----C-CCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh--
Q 025001 161 D-----E-GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-- 231 (259)
Q Consensus 161 ~-----~-~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-- 231 (259)
. . ..+......+|||+||||++|+++|.++|++||.+. ++.|+.++ +|+++|.|||.|.+..+|..||..
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~-ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVK-YAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccce-eEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0 0 011123358999999999999999999999999987 78888887 899999999999999999999964
Q ss_pred ----CC-CccCCeEEEEEeCCHH
Q 025001 232 ----DR-MTLGSRYIELFPSSHE 249 (259)
Q Consensus 232 ----~~-~~l~gr~i~V~~~~~~ 249 (259)
.+ ..|.||.|.|.++-..
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred ccCCCceEEEeccEEeeeeccch
Confidence 23 6789999999988544
No 14
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=5.4e-27 Score=181.01 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=141.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
+.+.||||+||+..++++-|.++|-++| ++.+.+. ++ +...+|||||+|.++|+|+.|++ ++.-.|-||+|+|.++
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3467999999999999999999999997 5567665 33 77889999999999999999998 6666799999999777
Q ss_pred chHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-C
Q 025001 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D 208 (259)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~ 208 (259)
+.. ......+..|||+||.++++|..|.+.|+.||.+...-.+++++ +
T Consensus 87 s~~-------------------------------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~t 135 (203)
T KOG0131|consen 87 SAH-------------------------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDT 135 (203)
T ss_pred ccc-------------------------------cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccC
Confidence 511 11123447899999999999999999999999765455777777 6
Q ss_pred CCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHH
Q 025001 209 GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 250 (259)
Q Consensus 209 g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~ 250 (259)
|.++|||||.|.+.+.+.+|+.. |++.+++|+|+|..+.+++
T Consensus 136 g~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 136 GNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred CCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 99999999999999999999988 9999999999999986654
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=2.9e-26 Score=211.28 Aligned_cols=161 Identities=22% Similarity=0.242 Sum_probs=130.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCC--CceEEEEec---CCCCceeEEEEEeCCHHHHHHHHHh-cc--ccCCCeEEEE
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVH---KNNKFTGEAFCVLGYPLQVDFALQR-NR--QNMGRRYVEV 126 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~--~iv~v~~~~---~~g~~~G~afV~F~~~e~A~~Al~~-~~--~~~~~r~i~v 126 (259)
+.++|||+|||+++|+++|.+.|+.+ +++++++.. ..++++|||||+|.+.++|.+|+.. +. ..+.++.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 47899999999999999999999998 466665542 3568899999999999999999974 32 2578999999
Q ss_pred EecchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccC--CCccceEEEe
Q 025001 127 FRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHIT 204 (259)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~--g~~~~~v~i~ 204 (259)
..+....- .........++|||+|||+++|+++|+++|+.| |.++ .|.++
T Consensus 217 dwA~p~~~---------------------------~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~-rV~~~ 268 (578)
T TIGR01648 217 DWAEPEEE---------------------------VDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVE-RVKKI 268 (578)
T ss_pred Eeeccccc---------------------------ccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceE-EEEee
Confidence 66542110 001122346789999999999999999999999 8775 66654
Q ss_pred eCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHH
Q 025001 205 MNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 250 (259)
Q Consensus 205 ~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~ 250 (259)
+|||||+|.+.++|.+||+. |+..|+|+.|+|.++.+.+
T Consensus 269 -------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 269 -------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred -------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 46999999999999999986 9999999999999997754
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2.8e-25 Score=204.49 Aligned_cols=189 Identities=17% Similarity=0.244 Sum_probs=134.2
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPF-DCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~-~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
.++++|||+|||+ .+|+++|+++|+.|| |..|.++.. .+|||||+|.+.++|+.||. +++..+.|+.|.|..+.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~---~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN---KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 4578999999998 699999999999996 556766532 35899999999999999997 78889999999998764
Q ss_pred hHHHHHHHhhhccccCCCCCCCCC--CccCCCCC-----CCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCC-ccceEE
Q 025001 131 RQEYYKAIANEVSDVRGGSPHRSI--PRAKSHDE-----GKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVL-SEDSIH 202 (259)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~-~~~~v~ 202 (259)
.............. +....... ........ ......++.+|||+|||.++|+++|+++|+.||. ....|+
T Consensus 350 ~~~~~~~~~~~~~~--~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 350 QQNVQPPREGQLDD--GLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccCCCCCcCcC--CCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 33211100000000 00000000 00000000 0011245678999999999999999999999996 223677
Q ss_pred EeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeE------EEEEeCCH
Q 025001 203 ITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRY------IELFPSSH 248 (259)
Q Consensus 203 i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~------i~V~~~~~ 248 (259)
+....++ ++|+|||+|.+.++|.+||.. |+..|.++. |.|..+++
T Consensus 428 ~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 428 FFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred EecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 7654444 689999999999999999987 999999985 88887754
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4e-26 Score=201.46 Aligned_cols=186 Identities=22% Similarity=0.331 Sum_probs=142.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchH
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQ 132 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~ 132 (259)
.||||++||++++.++|.++|+.+|++. +.++ +. .+.++||+||+|+=.+|++.|+. ..+..++||.|.|..+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 6999999999999999999999998765 5555 33 56899999999999999999997 5677899999999665533
Q ss_pred HHHHHHh-hhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCC
Q 025001 133 EYYKAIA-NEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 211 (259)
Q Consensus 133 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~ 211 (259)
.-..... .+..... -+.............+.++|.|+||||.+.+.||+.+|+.||.+. .|.|+...+|+-
T Consensus 86 ~r~e~~~~~e~~~ve-------K~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~-Ei~IP~k~dgkl 157 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVE-------KPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVV-EIVIPRKKDGKL 157 (678)
T ss_pred ccchhcccccchhhh-------cccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEE-EEEcccCCCCCc
Confidence 2211000 0000000 000000000001123478999999999999999999999999885 799998888888
Q ss_pred ceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHH
Q 025001 212 TGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 250 (259)
Q Consensus 212 ~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~ 250 (259)
.|||||+|....+|..||+. |+..|+||+|.|-++-.++
T Consensus 158 cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 158 CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred cceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 89999999999999999998 9999999999998876554
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.2e-25 Score=183.38 Aligned_cols=171 Identities=19% Similarity=0.234 Sum_probs=139.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEE-ec-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~-~~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
.--|||+.|...++.++|++.|.+|| |.+..+ .| .++++|||+||-|-+.++|+.||. ++++.|++|.|+-..+++
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45799999999999999999999996 555654 45 499999999999999999999997 788899999999877765
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCccCCCCCC-CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCC
Q 025001 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEG-KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~ 210 (259)
+.. ..++.+ ..+++- .......++|||+|++.-+||++|++.|++||.+. .|++.++
T Consensus 142 Kp~----------e~n~~~-------ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~-EVRvFk~---- 199 (321)
T KOG0148|consen 142 KPS----------EMNGKP-------LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQ-EVRVFKD---- 199 (321)
T ss_pred Ccc----------ccCCCC-------ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcce-EEEEecc----
Confidence 431 011111 111100 01235678999999999999999999999999885 7999866
Q ss_pred CceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHH
Q 025001 211 PTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 249 (259)
Q Consensus 211 ~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~ 249 (259)
+|||||.|.+.|.|.+||-. |+++++|..++...-+..
T Consensus 200 -qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 200 -QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred -cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 68999999999999999977 999999999999876543
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.9e-26 Score=198.55 Aligned_cols=165 Identities=20% Similarity=0.227 Sum_probs=136.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEE-ecC-CCCceeEEEEEeCCHHHHHHHHH-hccc-cC--CCeEEEEE
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLF-VHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQ-NM--GRRYVEVF 127 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~-~~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~-~~--~~r~i~v~ 127 (259)
+.-++||+-||..++|.||+++|++||.| +|.| .|+ +|.++|||||.|.+.++|.+|+. +++. .| ...+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 35689999999999999999999999755 5654 465 89999999999999999999997 4544 34 35567775
Q ss_pred ecchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC
Q 025001 128 RSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~ 207 (259)
.++.+. +.....++|||+-|+..+||.+|+++|++||.++ .+.|++|.
T Consensus 113 ~Ad~E~-------------------------------er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ie-d~~ilrd~ 160 (510)
T KOG0144|consen 113 YADGER-------------------------------ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIE-DCYILRDP 160 (510)
T ss_pred ccchhh-------------------------------hccccchhhhhhhccccccHHHHHHHHHhhCccc-hhhheecc
Confidence 553211 1123467899999999999999999999999997 79999999
Q ss_pred CCCCceEEEEEEcCHHHHHHHHHh-CCC-ccC--CeEEEEEeCCHHHH
Q 025001 208 DGRPTGEAFVEFANAEDSKAAMAK-DRM-TLG--SRYIELFPSSHEEM 251 (259)
Q Consensus 208 ~g~~~G~afV~F~~~~~A~~Al~~-~~~-~l~--gr~i~V~~~~~~~~ 251 (259)
.+.+||||||.|.+.+-|..||+. |+. ++. ..+|.|+.+.++.-
T Consensus 161 ~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 161 DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 999999999999999999999987 764 555 47899999876543
No 20
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=4.5e-25 Score=203.11 Aligned_cols=166 Identities=17% Similarity=0.128 Sum_probs=128.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEecCCCCceeEEEEEeCCHHHHHHHHHh---ccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHKNNKFTGEAFCVLGYPLQVDFALQR---NRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~---~~~~~~~r~i~v~~~~~ 131 (259)
+++|||+|||+++||++|+++|+.||.| .+.++. ++|||||+|.+.++|++||+. ++..++|+.|.|..+..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 6799999999999999999999999755 465553 458999999999999999973 56789999999977653
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCC
Q 025001 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 211 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~ 211 (259)
.+.. +... ............+|+|.||++.+|+++|+++|+.||.|. .|.+..+. .
T Consensus 78 ~~~~----------~~~~----------~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~-~v~i~~~~---~ 133 (481)
T TIGR01649 78 QEIK----------RDGN----------SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVL-RIVTFTKN---N 133 (481)
T ss_pred cccc----------cCCC----------CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEE-EEEEEecC---C
Confidence 2210 0000 000001112345799999999999999999999999886 77776543 2
Q ss_pred ceEEEEEEcCHHHHHHHHHh-CCCccCC--eEEEEEeCCHH
Q 025001 212 TGEAFVEFANAEDSKAAMAK-DRMTLGS--RYIELFPSSHE 249 (259)
Q Consensus 212 ~G~afV~F~~~~~A~~Al~~-~~~~l~g--r~i~V~~~~~~ 249 (259)
+|+|||+|.+.++|.+|++. ||..|.| +.|+|..++..
T Consensus 134 ~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 134 VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 47999999999999999986 9999954 57888777643
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=1.4e-24 Score=201.55 Aligned_cols=194 Identities=17% Similarity=0.205 Sum_probs=140.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
....+|||+|||+.+|+++|+++|+.||.+ .+.++ + .+|.++|||||+|.+.++|..||+ +++..++|+.|.|..+
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 446799999999999999999999999754 45544 4 489999999999999999999997 7888999999999776
Q ss_pred chHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCC----------CHHHHHHHhccCCCccc
Q 025001 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSA----------GKDDIMDFFKDFVLSED 199 (259)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~----------te~dl~~~F~~~g~~~~ 199 (259)
....... ......+..+..................+..+|+|.||...- ..++|+++|++||.+.
T Consensus 373 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~- 447 (509)
T TIGR01642 373 CVGANQA----TIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLI- 447 (509)
T ss_pred ccCCCCC----CccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCee-
Confidence 4211000 000000000000000000000000112356789999996421 2368999999999886
Q ss_pred eEEEeeCC----CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHH
Q 025001 200 SIHITMNS----DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMD 252 (259)
Q Consensus 200 ~v~i~~~~----~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~ 252 (259)
.|.|+... ++...|+|||+|.+.++|.+||.. ||..|+||.|.|.+.....+.
T Consensus 448 ~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~~~ 505 (509)
T TIGR01642 448 NIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDCYK 505 (509)
T ss_pred EEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHHhh
Confidence 78887642 356789999999999999999987 999999999999999888765
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.7e-24 Score=175.73 Aligned_cols=193 Identities=17% Similarity=0.184 Sum_probs=141.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEE-Eec-CCCCceeEEEEEeCCHHHHHHHHH-hcccc--CCCeEEEEE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQN--MGRRYVEVF 127 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~-~~~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~--~~~r~i~v~ 127 (259)
-.+..|||.+||.++|..||..+|++|| |+..+ ++| -+|.++|.+||.|...++|+.||. .+++. -...+|.|.
T Consensus 125 Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 125 IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence 3466999999999999999999999995 66543 445 589999999999999999999998 66664 245678886
Q ss_pred ecchHHHHH--HH-hh-hcc-ccCCCCCCCCC--------------------CccCCC------CCCCCCCCCccEEEEc
Q 025001 128 RSKRQEYYK--AI-AN-EVS-DVRGGSPHRSI--------------------PRAKSH------DEGKDSAVHTGILRLR 176 (259)
Q Consensus 128 ~~~~~~~~~--~~-~~-~~~-~~~~~~~~~~~--------------------~~~~~~------~~~~~~~~~~~~i~V~ 176 (259)
.+....-.. +. .. -.+ ..|.++|-.+. +-.... ..-+......+||||.
T Consensus 205 FannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvY 284 (360)
T KOG0145|consen 205 FANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVY 284 (360)
T ss_pred ecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEE
Confidence 655331100 00 00 001 11211111000 000000 0001123458999999
Q ss_pred CCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 177 GLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 177 nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
||.++++|.-|+.+|.+||.+. .|++++|. ++++||||||.+.+.++|..||.. ||..|++|.|.|..-+
T Consensus 285 NLspd~de~~LWQlFgpFGAv~-nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 285 NLSPDADESILWQLFGPFGAVT-NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred ecCCCchHhHHHHHhCccccee-eEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 9999999999999999999986 89999999 599999999999999999999977 9999999999997654
No 23
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.91 E-value=4e-25 Score=189.13 Aligned_cols=174 Identities=20% Similarity=0.332 Sum_probs=148.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecch
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~ 131 (259)
+.|+|||++|+|++||+.|+++|..++ +.++.++ ++ +++++||+||+|++++.+.++|....+.|.+|.|++.++..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 688999999999999999999999994 6777765 43 89999999999999999999999888999999999877653
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCC
Q 025001 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGR 210 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~ 210 (259)
.+... .........+|||++||.++++++++++|.+||.+. .+.++.|. +.+
T Consensus 85 r~~~~--------------------------~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~-~~~~~~d~~~~~ 137 (311)
T KOG4205|consen 85 REDQT--------------------------KVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVA-DVVIMYDKTTSR 137 (311)
T ss_pred ccccc--------------------------ccccccceeEEEecCcCCCCchHHHhhhhhccceeE-eeEEeecccccc
Confidence 32100 001112567899999999999999999999999765 56666666 789
Q ss_pred CceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCCHHHHHHHH
Q 025001 211 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEAL 255 (259)
Q Consensus 211 ~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~~~~~~~~~ 255 (259)
++||+||.|.+++.+.+++..+-+.|.|+.++|..+.+++++...
T Consensus 138 ~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 138 PRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred cccceeeEeccccccceecccceeeecCceeeEeeccchhhcccc
Confidence 999999999999999999999999999999999999999887543
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=6.5e-23 Score=188.08 Aligned_cols=196 Identities=19% Similarity=0.230 Sum_probs=139.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCc-eEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
.++|||+|||+++|+++|+++|+.||. ..|.+. + .+|+++|||||+|.+.++|.+||+ +++..+.|+.|.|..+..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 689999999999999999999999974 456554 4 467999999999999999999997 788889999999987542
Q ss_pred HHHHHHHhh----hccc--------------------cCC---CC--CCCC------------------CC-----cc--
Q 025001 132 QEYYKAIAN----EVSD--------------------VRG---GS--PHRS------------------IP-----RA-- 157 (259)
Q Consensus 132 ~~~~~~~~~----~~~~--------------------~~~---~~--~~~~------------------~~-----~~-- 157 (259)
......... .... ..+ +. +... .+ ..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 110000000 0000 000 00 0000 00 00
Q ss_pred ----CCCCCCCCCCCCccEEEEcCCCCCCC----------HHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHH
Q 025001 158 ----KSHDEGKDSAVHTGILRLRGLPFSAG----------KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223 (259)
Q Consensus 158 ----~~~~~~~~~~~~~~~i~V~nLp~~~t----------e~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~ 223 (259)
..............+|+|.||....+ .+||++.|++||.+. .|.+. +..+.|++||+|.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~-~v~v~---~~~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV-HIYVD---TKNSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee-EEEEe---CCCCceeEEEEECCHH
Confidence 00000001224578999999965544 378999999999885 66665 2356799999999999
Q ss_pred HHHHHHHh-CCCccCCeEEEEEeCCHHHHHHHH
Q 025001 224 DSKAAMAK-DRMTLGSRYIELFPSSHEEMDEAL 255 (259)
Q Consensus 224 ~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~~~~ 255 (259)
+|.+|++. ||..|+||.|.|...+.+.+....
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~~~~~~~~ 454 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVNDVYDMSC 454 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcHHHHHhhc
Confidence 99999988 999999999999999999877553
No 25
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.91 E-value=5.2e-23 Score=180.28 Aligned_cols=193 Identities=42% Similarity=0.658 Sum_probs=151.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceEE---EEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV---LFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v---~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
..+..|.+++|||.||++||.+||+++.|+.. .+++..+++.|-|||+|++.+.|++||.++...|+.|.|+|++++
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 45779999999999999999999999988873 345789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhcc------------ccCCC------------------CC-----------------------CCCCCcc
Q 025001 131 RQEYYKAIANEVS------------DVRGG------------------SP-----------------------HRSIPRA 157 (259)
Q Consensus 131 ~~~~~~~~~~~~~------------~~~~~------------------~~-----------------------~~~~~~~ 157 (259)
..++......... ..|+. .+ .+.....
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 9888665522110 00000 00 0000000
Q ss_pred CC--------CCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 025001 158 KS--------HDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229 (259)
Q Consensus 158 ~~--------~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al 229 (259)
.. ............+++.++||+..++.||..+|+..-.+ .|+|...++|+.+|.|+|+|.+.++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~--~v~i~ig~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY--RVHIEIGPDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce--eEEEEeCCCCccCCcceeecccchhhHhhh
Confidence 00 00000111223789999999999999999999997665 589998999999999999999999999999
Q ss_pred HhCCCccCCeEEEEEeCCH
Q 025001 230 AKDRMTLGSRYIELFPSSH 248 (259)
Q Consensus 230 ~~~~~~l~gr~i~V~~~~~ 248 (259)
.+++..++.|.|++++...
T Consensus 339 skd~anm~hrYVElFln~~ 357 (510)
T KOG4211|consen 339 GKDGANMGHRYVELFLNGA 357 (510)
T ss_pred ccCCcccCcceeeecccCC
Confidence 9999999999999988743
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.3e-23 Score=177.83 Aligned_cols=165 Identities=19% Similarity=0.283 Sum_probs=139.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceEEE-Ee-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVL-FV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~-~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
-|+|||+.|.|.+.|+.|+..|.+||++..+ +- | .+++++|||||+|+-+|.|+-|++ +|+..++||.|+|.+.+.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 7999999999999999999999999977644 32 4 499999999999999999999998 788899999999965442
Q ss_pred H----HHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC
Q 025001 132 Q----EYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207 (259)
Q Consensus 132 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~ 207 (259)
- ..+..... ....-++|||..+.++.+++||+..|+.||.+. .+.+.+++
T Consensus 193 mpQAQpiID~vqe-------------------------eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~-~C~LAr~p 246 (544)
T KOG0124|consen 193 MPQAQPIIDMVQE-------------------------EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV-KCQLARAP 246 (544)
T ss_pred CcccchHHHHHHH-------------------------HHHhhheEEeeecCCCccHHHHHHHHHhhccee-eEEeeccC
Confidence 1 11111111 113456899999999999999999999999886 78999988
Q ss_pred C-CCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 208 D-GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 208 ~-g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
+ +.++||||++|.+......||.. |-..|+|.+|+|-.+
T Consensus 247 t~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 247 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred CCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 6 57999999999999999999987 999999999999655
No 27
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1e-22 Score=165.45 Aligned_cols=161 Identities=16% Similarity=0.252 Sum_probs=133.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
+..+.|.|.-||..+|++||+.+|...|.+ .|.++ |+ +|++-||+||-|-+++||++|+. .++-.+..+.|+|..+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 346789999999999999999999999655 47655 55 99999999999999999999997 7888899999999665
Q ss_pred chHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-C
Q 025001 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D 208 (259)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~ 208 (259)
.+. ........|||++||.+.|..+|..+|++||.+..+ +|+.|. +
T Consensus 119 RPS--------------------------------s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItS-RiL~dqvt 165 (360)
T KOG0145|consen 119 RPS--------------------------------SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITS-RILVDQVT 165 (360)
T ss_pred cCC--------------------------------hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhh-hhhhhccc
Confidence 421 122445679999999999999999999999955423 455455 8
Q ss_pred CCCceEEEEEEcCHHHHHHHHHh-CCCccCC--eEEEEEeCC
Q 025001 209 GRPTGEAFVEFANAEDSKAAMAK-DRMTLGS--RYIELFPSS 247 (259)
Q Consensus 209 g~~~G~afV~F~~~~~A~~Al~~-~~~~l~g--r~i~V~~~~ 247 (259)
|.+||.|||.|+...+|+.||.. ||+.=-| -+|.|+.+.
T Consensus 166 g~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 166 GLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred ceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 99999999999999999999988 8887654 678887663
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=7.9e-23 Score=185.77 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=140.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCC----ceeEEEEEeCCHHHHHHHHHh-ccccCCCeEEEEEe
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNK----FTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFR 128 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~----~~G~afV~F~~~e~A~~Al~~-~~~~~~~r~i~v~~ 128 (259)
.++|||+||+|++|.++|...|...| +..+.|. .+++. |.|||||+|.++++|+.|++. ++..++|+.|.|..
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 44599999999999999999999986 5555443 34443 569999999999999999985 56899999999977
Q ss_pred cchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeC-C
Q 025001 129 SKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-S 207 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~-~ 207 (259)
+.... .... . ...........|.|+|||+.++..+|+++|..||.+. +|+|+.. .
T Consensus 595 S~~k~-----~~~~--------------g----K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlk-svRlPKK~~ 650 (725)
T KOG0110|consen 595 SENKP-----ASTV--------------G----KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLK-SVRLPKKIG 650 (725)
T ss_pred ccCcc-----cccc--------------c----cccccccccceeeeeccchHHHHHHHHHHHhccccee-eeccchhhc
Confidence 65110 0000 0 0001112367899999999999999999999999886 8999977 3
Q ss_pred CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHHHHH
Q 025001 208 DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEAL 255 (259)
Q Consensus 208 ~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~~~~ 255 (259)
.+-++|||||+|-++.+|.+|+.. ..+.|-||.|.+.++....+++++
T Consensus 651 k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~~e~~ 699 (725)
T KOG0110|consen 651 KGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNTMEAL 699 (725)
T ss_pred chhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchHHHHH
Confidence 567899999999999999999977 899999999999999877766554
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=6.3e-22 Score=174.88 Aligned_cols=151 Identities=21% Similarity=0.283 Sum_probs=132.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEE-ecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchHH
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQE 133 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~-~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~~ 133 (259)
..|||+ +++||..|.++|++++ ++.+++ ++. + +-|||||.|.++++|++||. +|...+.|+.|++.++.+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r-- 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR-- 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc--
Confidence 368999 9999999999999996 555664 455 5 99999999999999999998 566789999999976641
Q ss_pred HHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCce
Q 025001 134 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTG 213 (259)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G 213 (259)
....|||.||+.++|..+|.++|+.||.+. ++++..+..| ++|
T Consensus 75 -----------------------------------d~~~~~i~nl~~~~~~~~~~d~f~~~g~il-S~kv~~~~~g-~kg 117 (369)
T KOG0123|consen 75 -----------------------------------DPSLVFIKNLDESIDNKSLYDTFSEFGNIL-SCKVATDENG-SKG 117 (369)
T ss_pred -----------------------------------CCceeeecCCCcccCcHHHHHHHHhhcCee-EEEEEEcCCC-cee
Confidence 111299999999999999999999999886 8999999999 999
Q ss_pred EEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHH
Q 025001 214 EAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMD 252 (259)
Q Consensus 214 ~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~ 252 (259)
| ||+|+++++|.+||.+ ||..+.|+.|.|-+...++..
T Consensus 118 ~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 118 Y-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred e-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 9 9999999999999998 999999999999888776654
No 30
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=5.2e-22 Score=168.97 Aligned_cols=226 Identities=34% Similarity=0.578 Sum_probs=171.3
Q ss_pred chHHHHHHHhcC-CCCCCCCCCCCCccCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE--E-EEecCC
Q 025001 16 MGAKRQRLIDQG-PSFYGTPPSSSFMYNPPPAYGYVSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD--V-LFVHKN 91 (259)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~--v-~~~~~~ 91 (259)
|++-.-.++++. ...+..+--.+.+|.+-| .+-.....++..|..++|||..++.+|..||+...+.. + +..+..
T Consensus 20 ~vai~~a~l~~~~~~l~~~~e~vn~~y~~gt-~s~~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~q 98 (508)
T KOG1365|consen 20 MVAIILAILDEPDELLFSTPEFVNIKYEAGT-CSKNHSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQ 98 (508)
T ss_pred HHHHHHHHHcCcHhhhhcchhhheeeecccc-hhhccccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhh
Confidence 343334444433 344555555666776655 43333445677899999999999999999999887776 2 223568
Q ss_pred CCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCcc
Q 025001 92 NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTG 171 (259)
Q Consensus 92 g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
|+..|.|.|.|.++|.-+.|++++++.+++|+|+|++++..++..-...... ...... +....-
T Consensus 99 grRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~------------e~~~fl----sk~~qv 162 (508)
T KOG1365|consen 99 GRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSN------------EAAPFL----SKENQV 162 (508)
T ss_pred hccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccc------------cCCCCC----Ccccce
Confidence 8889999999999999999999999999999999999987665321111000 000000 112344
Q ss_pred EEEEcCCCCCCCHHHHHHHhcc---CCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCCH
Q 025001 172 ILRLRGLPFSAGKDDIMDFFKD---FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248 (259)
Q Consensus 172 ~i~V~nLp~~~te~dl~~~F~~---~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~~ 248 (259)
.|.+++||+++|+.|+.+||.+ .+...+.|.++..++|+.+|.|||.|..+++|+.||.+|...|+-|+|+|+.++.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTa 242 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTA 242 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhH
Confidence 6778999999999999999963 2222237889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 025001 249 EEMDEALSRG 258 (259)
Q Consensus 249 ~~~~~~~~~~ 258 (259)
.|+.++++|.
T Consensus 243 aEvqqvlnr~ 252 (508)
T KOG1365|consen 243 AEVQQVLNRE 252 (508)
T ss_pred HHHHHHHHhh
Confidence 9999998863
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=5.1e-22 Score=163.67 Aligned_cols=143 Identities=17% Similarity=0.234 Sum_probs=127.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCC-CceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchHHHH
Q 025001 58 VVRLRGLPFDCTEVDVAEFFHGL-DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYY 135 (259)
Q Consensus 58 ~vfV~nLp~~~te~~L~~~F~~~-~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~~~~ 135 (259)
.|||+|||..+++.+|+.+|++| .+++|-|+ |.||||..++...|+.||. +++-.|+|..|.|..+..+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee------cccceEEeecccccHHHHhhcccceecceEEEEEecccc---
Confidence 79999999999999999999999 57788776 2499999999999999998 7888899999999666421
Q ss_pred HHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEE
Q 025001 136 KAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEA 215 (259)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~a 215 (259)
.....+|+|+||.+.++.++|+..|++||.+. .+.|+++ |+
T Consensus 75 -------------------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpvi-ecdivkd-------y~ 115 (346)
T KOG0109|consen 75 -------------------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVI-ECDIVKD-------YA 115 (346)
T ss_pred -------------------------------CCCccccccCCCCccccCHHHhhhhcccCCce-eeeeecc-------ee
Confidence 23567899999999999999999999999775 6888855 99
Q ss_pred EEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCH
Q 025001 216 FVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248 (259)
Q Consensus 216 fV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~ 248 (259)
||.|+-.++|..|++. |++++.|+.++|++++.
T Consensus 116 fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 116 FVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred EEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 9999999999999987 99999999999999864
No 32
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=7.1e-22 Score=175.24 Aligned_cols=175 Identities=23% Similarity=0.275 Sum_probs=143.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
.+.+|||+--|+..+++.||.+||+.+| +.+|+++ + .+++++|.|||+|.+.+.+..||.+.|+.+.|-+|.|..+.
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccH
Confidence 4578999999999999999999999996 5567654 5 48999999999999999999999999999999999997765
Q ss_pred hHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CC
Q 025001 131 RQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DG 209 (259)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g 209 (259)
.+....+...... .......+-..|||+||.+++|+++|+..|++||.++ .|.+.+|. +|
T Consensus 257 aeknr~a~~s~a~------------------~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie-~v~l~~d~~tG 317 (549)
T KOG0147|consen 257 AEKNRAANASPAL------------------QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIE-NVQLTKDSETG 317 (549)
T ss_pred HHHHHHHhccccc------------------cccccccchhhhhhcccccCchHHHHhhhccCcccce-eeeeccccccc
Confidence 5443321111100 0011112223399999999999999999999999887 78898887 99
Q ss_pred CCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 210 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 210 ~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
+++|||||+|.+.++|.+|+.. ||.+|-||.|.|...+
T Consensus 318 ~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 318 RSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred cccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 9999999999999999999876 9999999999997654
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.7e-20 Score=165.86 Aligned_cols=165 Identities=18% Similarity=0.236 Sum_probs=141.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCC-CceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchHHH
Q 025001 58 VVRLRGLPFDCTEVDVAEFFHGL-DIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEY 134 (259)
Q Consensus 58 ~vfV~nLp~~~te~~L~~~F~~~-~iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~~~ 134 (259)
.|||.||+.++|..+|.++|+.| .|+.|.+. +.+| ++|| ||+|+++++|++|++ +|+..+.++.|.|.....+++
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 39999999999999999999999 58888876 5677 9999 999999999999998 688899999999977765554
Q ss_pred HHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceE
Q 025001 135 YKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214 (259)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~ 214 (259)
......+ ....-..++|.|++.+++++.|.++|+.+|.+. ++.++.+..|+++||
T Consensus 156 r~~~~~~------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~-s~~v~~~~~g~~~~~ 210 (369)
T KOG0123|consen 156 REAPLGE------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT-SVAVMRDSIGKSKGF 210 (369)
T ss_pred hcccccc------------------------hhhhhhhhheeccccccchHHHHHhhcccCcce-EEEEeecCCCCCCCc
Confidence 3211111 112345699999999999999999999999886 889999999999999
Q ss_pred EEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHH
Q 025001 215 AFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 249 (259)
Q Consensus 215 afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~ 249 (259)
+||.|.++++|..|++. |+..+++..+.|..+..+
T Consensus 211 gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 211 GFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred cceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 99999999999999988 999999999999887663
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.3e-18 Score=133.62 Aligned_cols=167 Identities=20% Similarity=0.213 Sum_probs=121.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
...|+|||+|||.++.|.||.++|.+|+ |++|.|.++.|- .+||||+|+++.+|+.||. +++--++|-.+.|....-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~-ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGP-PPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCC-CCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 3478999999999999999999999995 667878766553 3699999999999999997 788889999999955431
Q ss_pred HHHHHHHhhhccccCC---CCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCC
Q 025001 132 QEYYKAIANEVSDVRG---GSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 208 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~ 208 (259)
-- ..+..++ +.....+... ....+....+...|.|++||.+.+|+||+++..+-|.+- ...+.+|
T Consensus 83 gr-------~s~~~~G~y~gggrgGgg~g--g~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvC-fadv~rD-- 150 (241)
T KOG0105|consen 83 GR-------SSSDRRGSYSGGGRGGGGGG--GRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVC-FADVQRD-- 150 (241)
T ss_pred CC-------cccccccccCCCCCCCCCCC--cccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCee-eeeeecc--
Confidence 00 0001111 0011111111 111122345678999999999999999999999988763 5566555
Q ss_pred CCCceEEEEEEcCHHHHHHHHHh-CCCccC
Q 025001 209 GRPTGEAFVEFANAEDSKAAMAK-DRMTLG 237 (259)
Q Consensus 209 g~~~G~afV~F~~~~~A~~Al~~-~~~~l~ 237 (259)
|++.|+|.+.|+-+-|+.+ +.+.+.
T Consensus 151 ----g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 151 ----GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ----cceeeeeeehhhHHHHHHhhcccccc
Confidence 4899999999999999976 655553
No 35
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.78 E-value=1.7e-17 Score=143.82 Aligned_cols=191 Identities=18% Similarity=0.207 Sum_probs=141.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCC-CceE-EE-EecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGL-DIVD-VL-FVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~-~iv~-v~-~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
..+.|||.||||++.|+||+++|... +.|+ |. +.|.+|+++|||.|+|+++|.+++|++ +++..+.||+|.|....
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 46679999999999999999999866 6555 64 569999999999999999999999998 56667999999997765
Q ss_pred hHHHHHHHhhhc--c-------c--------cCCC----CCCCCCCcc-------------CC-----------------
Q 025001 131 RQEYYKAIANEV--S-------D--------VRGG----SPHRSIPRA-------------KS----------------- 159 (259)
Q Consensus 131 ~~~~~~~~~~~~--~-------~--------~~~~----~~~~~~~~~-------------~~----------------- 159 (259)
..+..+...... . . ...+ ...+..... ..
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 433211111000 0 0 0000 000000000 00
Q ss_pred CCCC--CCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCcc
Q 025001 160 HDEG--KDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL 236 (259)
Q Consensus 160 ~~~~--~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l 236 (259)
++.. .-......++||.||.+.+....|++.|.-.|.+. +|.+-.|+.|.++|||.++|..+-+|..||.+ ++.-+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~-~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQ-SVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeee-eeceeeccccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 0000 00123356899999999999999999999999875 89999999999999999999999999999998 88888
Q ss_pred CCeEEEEEeC
Q 025001 237 GSRYIELFPS 246 (259)
Q Consensus 237 ~gr~i~V~~~ 246 (259)
..++..+.+-
T Consensus 282 ~~~~~~~Rl~ 291 (608)
T KOG4212|consen 282 FDRRMTVRLD 291 (608)
T ss_pred ccccceeecc
Confidence 8888888763
No 36
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.77 E-value=7.5e-17 Score=149.50 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
..++|||+|||+++++++|+++|+.|| |..+.+. ++ +|+++|||||+|.+.++|.+||+ +|+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 467999999999999999999999996 5567655 43 78899999999999999999997 67778999999997765
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.1e-18 Score=141.15 Aligned_cols=136 Identities=18% Similarity=0.218 Sum_probs=107.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecch
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~ 131 (259)
++.+||||+||..++||+-|..+|++.|.+. +.++ + .|.|..+..
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~~ 50 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWATA 50 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhccccccC
Confidence 3467999999999999999999999998665 4332 3 223322221
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCC
Q 025001 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGR 210 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~ 210 (259)
.. ............|||+.|...++-++|++.|.+||.+. ..+|++|. +++
T Consensus 51 p~---------------------------nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS-~akvirD~~T~K 102 (321)
T KOG0148|consen 51 PG---------------------------NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVS-DAKVIRDMNTGK 102 (321)
T ss_pred cc---------------------------cCCCCccccceeEEehhcchhcchHHHHHHhccccccc-cceEeecccCCc
Confidence 10 00111223355699999999999999999999999885 78888888 899
Q ss_pred CceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHH
Q 025001 211 PTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 250 (259)
Q Consensus 211 ~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~ 250 (259)
+||||||.|-+.++|+.||.. ||+.|++|.|+-..++++.
T Consensus 103 sKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 103 SKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred ccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 999999999999999999988 9999999999998887764
No 38
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=5.5e-18 Score=138.50 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...+.|||..||.+.++.+|..+|-+||.+. +.++..|+ ++.+|.||||.|+++.+|+.||.. ||..|+=+.|.|.+
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhiv-SaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIV-SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhcccccee-eeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 4578999999999999999999999999776 56666666 899999999999999999999988 99999999999988
Q ss_pred CCHHH
Q 025001 246 SSHEE 250 (259)
Q Consensus 246 ~~~~~ 250 (259)
-.+++
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 87765
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=9.3e-18 Score=130.05 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=74.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||+++|+++|+++|++||.+. .+.|+.+. +++++|||||+|.+.++|+.||+. |+..|+|+.|.|.+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVV-DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567899999999999999999999999886 78888877 899999999999999999999986 99999999999998
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.+.
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8654
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=4.3e-17 Score=141.07 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=70.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.....+||.+||.+.-+.||...|.+||.|. +..+..|+ +|.++-|+||.|++..+|..||.. ||..++.+.+.|.+
T Consensus 422 peGanlfiyhlPqefgdq~l~~~f~pfG~Vl-sakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 422 PEGANLFIYHLPQEFGDQDLIATFQPFGGVL-SAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCccceeeeeCchhhhhHHHHHHhcccccee-EEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 3457799999999999999999999999886 55665555 999999999999999999999988 99999999999987
Q ss_pred CC
Q 025001 246 SS 247 (259)
Q Consensus 246 ~~ 247 (259)
..
T Consensus 501 k~ 502 (510)
T KOG0144|consen 501 KR 502 (510)
T ss_pred ee
Confidence 64
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=1.8e-16 Score=144.71 Aligned_cols=191 Identities=18% Similarity=0.224 Sum_probs=127.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhcc-ccCCCeEEEEEecch
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR-QNMGRRYVEVFRSKR 131 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~-~~~~~r~i~v~~~~~ 131 (259)
....+.|+|+|||..+..++|..+|..||.+.-+++.+.|. .|+|+|.++.+|.+|..... ..+..-++.+.+...
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~ 458 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPE 458 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcccc---eeeeeecCccchHHHHHHhchhhhccCccccccChh
Confidence 34578999999999999999999999997555335556553 49999999999999998544 344444444433322
Q ss_pred HHHHHH-----Hhhhcccc-CCCCCCC----CCCccCCCC--------CCCCCCCCccEEEEcCCCCCCCHHHHHHHhcc
Q 025001 132 QEYYKA-----IANEVSDV-RGGSPHR----SIPRAKSHD--------EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKD 193 (259)
Q Consensus 132 ~~~~~~-----~~~~~~~~-~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~ 193 (259)
.-+... ...+.... .-....+ ..+.....+ ..........+|||+||++++|.++|..+|..
T Consensus 459 dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k 538 (725)
T KOG0110|consen 459 DVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSK 538 (725)
T ss_pred hhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHh
Confidence 211100 00000000 0000000 000000000 00011122334999999999999999999999
Q ss_pred CCCccceEEEeeCCCC----CCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 194 FVLSEDSIHITMNSDG----RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 194 ~g~~~~~v~i~~~~~g----~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
.|.+. ++.|...+++ .|.|||||+|.+.++|+.|++. +|+.|+|+.|.|.++.
T Consensus 539 ~G~Vl-S~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 539 QGTVL-SIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred cCeEE-EEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99775 6777665544 3569999999999999999998 9999999999999986
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.69 E-value=2.4e-16 Score=140.29 Aligned_cols=194 Identities=17% Similarity=0.157 Sum_probs=132.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
...|||+||.+.+||++|+.+|++||-++ |.+. | .+|+++||+||+|.+.++|++|+. +|+-.|.||.|.|...+.
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 43499999999999999999999998666 4443 5 499999999999999999999986 677779999999865442
Q ss_pred HHHHHHH---hh--h----ccc---cCC----------CCCCCCCC-------------cc-----CCCCCCCCCC----
Q 025001 132 QEYYKAI---AN--E----VSD---VRG----------GSPHRSIP-------------RA-----KSHDEGKDSA---- 167 (259)
Q Consensus 132 ~~~~~~~---~~--~----~~~---~~~----------~~~~~~~~-------------~~-----~~~~~~~~~~---- 167 (259)
.--.... .. . ... ..+ +.+..... .. ........+.
T Consensus 358 r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p 437 (549)
T KOG0147|consen 358 RVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASP 437 (549)
T ss_pred ecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccc
Confidence 2110000 00 0 000 000 00000000 00 0000111112
Q ss_pred ---CCccEEEEcCCCCCCCH----------HHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CC
Q 025001 168 ---VHTGILRLRGLPFSAGK----------DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DR 233 (259)
Q Consensus 168 ---~~~~~i~V~nLp~~~te----------~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~ 233 (259)
.++.|+.++|+=...|+ +||.+-+.+||.+ ++|..|++.. |+-||.|.+.++|..|+.. ||
T Consensus 438 ~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v---~hi~vd~ns~--g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 438 AFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKV---CHIFVDKNSA--GCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred ccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCe---eEEEEccCCC--ceEEEecCcHHHHHHHHHHHhh
Confidence 56778999998433332 7788889999977 4666665332 8999999999999999988 99
Q ss_pred CccCCeEEEEEeCCHHHHHHH
Q 025001 234 MTLGSRYIELFPSSHEEMDEA 254 (259)
Q Consensus 234 ~~l~gr~i~V~~~~~~~~~~~ 254 (259)
..|.||.|+..+.....+...
T Consensus 513 rWF~gr~Ita~~~~~~~Y~~~ 533 (549)
T KOG0147|consen 513 RWFAGRMITAKYLPLERYHSK 533 (549)
T ss_pred hhhccceeEEEEeehhhhhhh
Confidence 999999999998877766543
No 43
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.68 E-value=1.6e-16 Score=107.64 Aligned_cols=69 Identities=35% Similarity=0.584 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 173 i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
|||+|||.++|+++|+++|++||.+. .+.+..+.++.++|+|||+|.+.++|++|++. |+..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIE-SIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEE-EEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcc-cccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999885 78888878899999999999999999999996 99999999985
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=8.3e-15 Score=123.90 Aligned_cols=187 Identities=20% Similarity=0.270 Sum_probs=132.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE---------EEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCC
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---------VLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGR 121 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~---------v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~ 121 (259)
+.-++.|||.|||.++|-+++.++|+.||++- |.|+ +..|+.+|-|.+.|--.++++-|++ ++...+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34477899999999999999999999998652 5565 5689999999999999999999998 67778999
Q ss_pred eEEEEEecchHHHHHHHhhhccccCCC-CC---------CCCCCccCCCCCCCCCCCCccEEEEcCCC----CCCC----
Q 025001 122 RYVEVFRSKRQEYYKAIANEVSDVRGG-SP---------HRSIPRAKSHDEGKDSAVHTGILRLRGLP----FSAG---- 183 (259)
Q Consensus 122 r~i~v~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~i~V~nLp----~~~t---- 183 (259)
+.|.|..+.-+.. ..........+ .+ .......... .........++|.++||- +..+
T Consensus 211 ~~~rVerAkfq~K---ge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 211 KKLRVERAKFQMK---GEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred cEEEEehhhhhhc---cCcCcccccccccccHHHHHHHHHhhcccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 9999976642110 00000000000 00 0000000011 112233567899999983 3344
Q ss_pred ---HHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 184 ---KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 184 ---e~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
.+||++-.++||.+. .|.|.. ..+.|.+-|.|.+.++|..||+. +|..++||.|..++..
T Consensus 287 ~dlkedl~eec~K~G~v~-~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQVR-KVVVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHHHHhCCcc-eEEEec---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 256677789999986 565552 35678999999999999999998 9999999999987763
No 45
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.67 E-value=4.5e-15 Score=119.29 Aligned_cols=186 Identities=17% Similarity=0.209 Sum_probs=129.5
Q ss_pred CCEEEEcCCCCCCCHHHHHH----HhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 56 FPVVRLRGLPFDCTEVDVAE----FFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~----~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
+.||||.||+..+..++|+. +|++|| |++|. .-++.+.+|-|||.|.+.+.|..|+. ++|-.+-|+++++..+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~-a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDIS-AFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEE-ecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 44999999999999999999 999996 66655 44677899999999999999999997 5666788999998665
Q ss_pred chH-HHHHHHhhhcc--ccCC--------CCCCCCCC---c-cCCCCC---CCCCCCCccEEEEcCCCCCCCHHHHHHHh
Q 025001 130 KRQ-EYYKAIANEVS--DVRG--------GSPHRSIP---R-AKSHDE---GKDSAVHTGILRLRGLPFSAGKDDIMDFF 191 (259)
Q Consensus 130 ~~~-~~~~~~~~~~~--~~~~--------~~~~~~~~---~-~~~~~~---~~~~~~~~~~i~V~nLp~~~te~dl~~~F 191 (259)
... +.......... ..+. +.+..... . .....+ ......+...+|+.|||..++.+.+..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 433 33222111100 0000 00000000 0 000000 01234677899999999999999999999
Q ss_pred ccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccC-CeEEEEEeCC
Q 025001 192 KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLG-SRYIELFPSS 247 (259)
Q Consensus 192 ~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~-gr~i~V~~~~ 247 (259)
.+|.-.. .|+++... .|.|||+|.+...|..|.+. .+..+- ...+.|..++
T Consensus 168 ~qf~g~k-eir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 168 EQFPGFK-EIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhCcccc-eeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9997554 57877543 35899999999999999876 776665 6677776553
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=8.2e-16 Score=119.17 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=68.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
....++|||+|||+++||++|+++|++|+ |.++.++ + .+++++|||||+|++.++|++||+ +++..|+++.|.|..
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45577999999999999999999999996 5556543 4 489999999999999999999997 688899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 111 a~ 112 (144)
T PLN03134 111 AN 112 (144)
T ss_pred CC
Confidence 65
No 47
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=5.2e-16 Score=105.45 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=62.9
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 173 LRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 173 i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
|||+|||++++++||+++|+.||.+. .|.+..+++|.++|+|||+|.+.++|.+|++. ++..++||.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~-~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVE-KVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEE-EEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcc-eEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999875 89999888899999999999999999999998 88999999885
No 48
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.65 E-value=3.5e-16 Score=142.19 Aligned_cols=198 Identities=18% Similarity=0.108 Sum_probs=153.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEE-ec-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecch
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~-~~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~ 131 (259)
.+.|.+-+++.++++++.|+++||.+..+-.+-| .+ -.+..+|-++|.|....++++|++++...+-.|+|.+.....
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred chhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCc
Confidence 5689999999999999999999999886655433 23 344458999999999999999999999999999999988877
Q ss_pred HHHHHHHhhhcccc------CCCCCCCCCCccCCCC--CCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEE
Q 025001 132 QEYYKAIANEVSDV------RGGSPHRSIPRAKSHD--EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHI 203 (259)
Q Consensus 132 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i 203 (259)
.+|..+........ ..+.+. ..++..... ....+.....+|||..||..+++.++.++|...-+|++.|.|
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~-~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPI-APPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred cccccCccccccCCCCcccccCCCCC-CCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 66643222111000 000110 111111000 011234567899999999999999999999998888888999
Q ss_pred eeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHH
Q 025001 204 TMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMD 252 (259)
Q Consensus 204 ~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~ 252 (259)
...++++.++.|||.|..++++..|+.. +.++++.|.|+|..++.++|.
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m~ 517 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAMM 517 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHHH
Confidence 9999999999999999999999999887 999999999999999999883
No 49
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=5.8e-16 Score=125.41 Aligned_cols=167 Identities=25% Similarity=0.333 Sum_probs=121.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchHHH
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEY 134 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~~~ 134 (259)
..|||++||+.+.+.||..||.+++ +-++.+. .||+||+|.+..+|..|+. .++..|++-.+.|..+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~-- 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK-- 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee------cccceeccCchhhhhcccchhcCceecceeeeeeccccc--
Confidence 4799999999999999999999995 4455554 2799999999999999996 6777777666555333211
Q ss_pred HHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceE
Q 025001 135 YKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE 214 (259)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~ 214 (259)
..+ ++.++ .+ ...........+....+.|.|.|++..+.+.+|.+.|.++|.+. .+.+ ..++
T Consensus 74 ----~~~----~g~~~-~g-~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~-~~~~-------~~~~ 135 (216)
T KOG0106|consen 74 ----RRG----RGRPR-GG-DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVT-YVDA-------RRNF 135 (216)
T ss_pred ----ccc----cCCCC-CC-CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCc-hhhh-------hccc
Confidence 000 01111 00 00000111122345678899999999999999999999999774 3322 3569
Q ss_pred EEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHH
Q 025001 215 AFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 249 (259)
Q Consensus 215 afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~ 249 (259)
+||+|.+.++|.+|+.. ++..+.++.|++......
T Consensus 136 ~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~d 171 (216)
T KOG0106|consen 136 AFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSRD 171 (216)
T ss_pred cceeehhhhhhhhcchhccchhhcCceeeecccCcc
Confidence 99999999999999988 999999999999555433
No 50
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.5e-15 Score=127.53 Aligned_cols=83 Identities=23% Similarity=0.335 Sum_probs=76.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
....++|+|+|||+..-+.||+.+|.+||.|. .|.|+.+..| +||||||+|++.+||++|-++ ||..+.||+|+|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vl-dVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVL-DVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCcee-eEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 35678999999999999999999999999886 8999988776 799999999999999999988 99999999999999
Q ss_pred CCHHHH
Q 025001 246 SSHEEM 251 (259)
Q Consensus 246 ~~~~~~ 251 (259)
++..-+
T Consensus 171 ATarV~ 176 (376)
T KOG0125|consen 171 ATARVH 176 (376)
T ss_pred cchhhc
Confidence 987643
No 51
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=2.1e-15 Score=132.79 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=74.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|+.||.|. .|+|+.|. +++++|||||+|.++++|.+||+. |+..|.++.|.|.
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~-~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPIN-TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 35678999999999999999999999999886 78998886 899999999999999999999976 9999999999998
Q ss_pred eCCH
Q 025001 245 PSSH 248 (259)
Q Consensus 245 ~~~~ 248 (259)
.+.+
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 8754
No 52
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=2.7e-15 Score=124.59 Aligned_cols=75 Identities=16% Similarity=0.298 Sum_probs=69.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
.++|||+|||+.+|+++|+++|+.||.+. .|.|+.+.. ++|||||+|.++++|..||.+||..|+||.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~-~V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIE-YVEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 56899999999999999999999999886 899987753 5799999999999999999889999999999999885
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=5.5e-15 Score=99.96 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=60.2
Q ss_pred EEEcCCCCCCCHHHHHHHhcCCCce-EEEEec-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEE
Q 025001 59 VRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVE 125 (259)
Q Consensus 59 vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~ 125 (259)
|||+|||.++|+++|+++|++||.+ .+.+.. .+++++|+|||+|.+.++|++|++ +++..++++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999765 455554 789999999999999999999998 888899999874
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.59 E-value=6.3e-14 Score=112.14 Aligned_cols=181 Identities=19% Similarity=0.260 Sum_probs=111.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCC-CceEEEEe--cCCC-CceeEEEEEeCCHHHHHHHHH-hccccCC---CeE
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGL-DIVDVLFV--HKNN-KFTGEAFCVLGYPLQVDFALQ-RNRQNMG---RRY 123 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~-~iv~v~~~--~~~g-~~~G~afV~F~~~e~A~~Al~-~~~~~~~---~r~ 123 (259)
++..-+||||.|||.++.-.||..+|..| |-..+.+. ++.+ -.+-+|||+|.+..+|.+|+. .+|..++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 35568999999999999999999999999 66655554 3332 245799999999999999998 5666554 444
Q ss_pred EEEE--ecchHHHHHHHhhhcc-------c-----cCCC----------CCCC---------------C-----------
Q 025001 124 VEVF--RSKRQEYYKAIANEVS-------D-----VRGG----------SPHR---------------S----------- 153 (259)
Q Consensus 124 i~v~--~~~~~~~~~~~~~~~~-------~-----~~~~----------~~~~---------------~----------- 153 (259)
+.+. +++.+-.......... . .+.. .+.. .
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 4443 2221110000000000 0 0000 0000 0
Q ss_pred CCccCCC----CCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 025001 154 IPRAKSH----DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229 (259)
Q Consensus 154 ~~~~~~~----~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al 229 (259)
.+..... ...........+|||-||..++||++|+.+|+.|---. +.-+..+.|.+ .|||+|++.+.|..||
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~--~l~~~~~~g~~--vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFH--ILKIRARGGMP--VAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCce--EEEEecCCCcc--eEeecHHHHHHHHHHH
Confidence 0000000 00011223456899999999999999999999984321 23334445655 8999999999999999
Q ss_pred Hh-CCCcc
Q 025001 230 AK-DRMTL 236 (259)
Q Consensus 230 ~~-~~~~l 236 (259)
.. .|..|
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 65 65544
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.4e-15 Score=121.18 Aligned_cols=75 Identities=15% Similarity=0.270 Sum_probs=66.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCC-CceEE-EEecC-CCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGL-DIVDV-LFVHK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~-~iv~v-~~~~~-~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
.++|||+||||.++.++|+++|++| +|++. +|-|+ +|+||||+||+|++.+.|.+|++-.+-.|+||...|..+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 5699999999999999999999999 58884 44565 9999999999999999999999988889999998875543
No 56
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.9e-15 Score=120.79 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
..-.+|||+||+|.++.++|+++|++||.+...|.|....+|++||||||+|.+.++|.+|++--+-.|+||+-.+.+++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 35678999999999999999999999997764555554449999999999999999999999987799999998888775
Q ss_pred H
Q 025001 248 H 248 (259)
Q Consensus 248 ~ 248 (259)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.2e-14 Score=117.71 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=75.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|.|.|||.+++|.||++||.+||.+. .|.|.+|+ +|.+||||||.|.+.++|.+||+. ||.-+++=.|+|..
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~-rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPIT-RVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccc-eeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 4678899999999999999999999999885 89999998 899999999999999999999988 99999999999998
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 8764
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=2.5e-14 Score=97.12 Aligned_cols=67 Identities=25% Similarity=0.345 Sum_probs=56.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcCCCce-EEEEe-cCCCCceeEEEEEeCCHHHHHHHHHhcc-ccCCCeEEE
Q 025001 59 VRLRGLPFDCTEVDVAEFFHGLDIV-DVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNR-QNMGRRYVE 125 (259)
Q Consensus 59 vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~-~~~~~r~i~ 125 (259)
|||+|||+++++++|+++|+.++.+ .+.+. +++|.++|+|||+|.+.++|.+|++.++ ..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999755 46544 5568999999999999999999999655 789999874
No 59
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.56 E-value=2.1e-14 Score=117.51 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=70.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
..++|||+||++.+|++||++||+.||.|. .|+|+.+ +..+|||||+|.++++|+.||.+||..|.++.|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~-~V~I~~D--~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIE-HVEIIRS--GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeE-EEEEecC--CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 467999999999999999999999999986 8999877 566789999999999999999889999999999998854
No 60
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=9.4e-15 Score=107.10 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEe--cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV--HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~--~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
..+|||||+||++.+||++|.++|+.||.+..+|| |+ +..+-|||||+|.+.++|+.||. .++..|+.|+|.+.+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34899999999999999999999999987775554 54 66789999999999999999998 688899999999844
No 61
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=2.7e-14 Score=118.73 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=64.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
.++|||+|||+++||++|++||+.|| |.+|.|... +.++|||||+|.++++|+.||.+++..|+|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d-~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSE-NERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec-CCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 56999999999999999999999996 556766422 235799999999999999999999999999999997764
No 62
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.1e-14 Score=129.31 Aligned_cols=187 Identities=17% Similarity=0.196 Sum_probs=135.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCc----------eEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDI----------VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRR 122 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~i----------v~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r 122 (259)
...+..++|+++|+.++|+..-.||..--. ..++.+ .-...+.||||+|.+.++|..|+..++..+.|+
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~-~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~ 250 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSV-QLNLEKNFAFIEFRSISEATEAMALDGIIFEGR 250 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeee-eecccccceeEEecCCCchhhhhcccchhhCCC
Confidence 345889999999999999999999974311 011111 123445799999999999999999999999999
Q ss_pred EEEEEecchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEE
Q 025001 123 YVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 202 (259)
Q Consensus 123 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~ 202 (259)
.+.+...........+.-...+ . ..................|+|+|||...++.+++++...||... ...
T Consensus 251 ~~~~~r~~d~~~~p~~~~~~~~-~--------~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk-~f~ 320 (500)
T KOG0120|consen 251 PLKIRRPHDYQPVPGITLSPSQ-L--------GKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLK-AFR 320 (500)
T ss_pred CceecccccccCCccchhhhcc-c--------cccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccch-hhe
Confidence 9887554421110000000000 0 00000001112345678899999999999999999999999775 566
Q ss_pred EeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHH
Q 025001 203 ITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 250 (259)
Q Consensus 203 i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~ 250 (259)
++.+. +|.++||||.+|.++.....|+.. ||+.++++.|.|+.+....
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 77666 699999999999999999999988 9999999999999886543
No 63
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=3.7e-14 Score=103.99 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=69.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
..+++|||+||++.++|++|.+||+.+|.+. .|.+-.|+ +-.+=|||||+|.+.++|+.||+- +++.|+.|+|++-+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~ir-riiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIR-RIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchh-eeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 5678999999999999999999999999886 66666666 567889999999999999999998 99999999999854
No 64
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=1.3e-13 Score=92.71 Aligned_cols=71 Identities=31% Similarity=0.528 Sum_probs=64.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 172 ~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
+|+|+|||..+++++|+++|.+||.+. .+.+..+. +.++|+|||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~-~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIE-SVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEE-EEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999999875 67888776 78899999999999999999988 9899999999873
No 65
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=5.6e-13 Score=94.29 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=72.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
.-...|||+|||+++|.+++.++|.+||.+. .|+|-. +-..+|.|||.|++..+|.+|+.. +|..+.+|+|.|...
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~Ir-QIRiG~--~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIR-QIRIGN--TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceE-EEEecC--ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 5577899999999999999999999999885 566643 345689999999999999999987 999999999999988
Q ss_pred CHHHHHHH
Q 025001 247 SHEEMDEA 254 (259)
Q Consensus 247 ~~~~~~~~ 254 (259)
.+.+..+.
T Consensus 93 q~~~~~~~ 100 (124)
T KOG0114|consen 93 QPEDAFKL 100 (124)
T ss_pred CHHHHHHH
Confidence 87765543
No 66
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2e-13 Score=111.79 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=65.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCc-eEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
...+|||+||++++||++|++||+.||. .+|.|... +..+|+|||+|.++++|+.||.+++..|.++.|.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS-GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC-CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 3579999999999999999999999975 55766533 566789999999999999999999999999999997654
No 67
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=9e-13 Score=111.52 Aligned_cols=164 Identities=20% Similarity=0.240 Sum_probs=110.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHh-ccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~-~~~~~~~r~i~v~~~~~ 131 (259)
.++|||+|||+++|+++|+++|..|+.+ .+.+. + .+|+++|||||+|.+.++|..|+.. ++..+.|+.|.|.....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999755 55543 5 4899999999999999999999985 55789999999977542
Q ss_pred --HHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCC
Q 025001 132 --QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209 (259)
Q Consensus 132 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g 209 (259)
...... ... ... ...................+++.|++..++..++..+|..+|.+. .+.+.....+
T Consensus 195 ~~~~~~~~------~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 263 (306)
T COG0724 195 ASQPRSEL------SNN---LDA-SFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIV-RASLPPSKDG 263 (306)
T ss_pred cccccccc------ccc---cch-hhhccccccccccccccceeeccccccccchhHHHHhccccccce-eeeccCCCCC
Confidence 000000 000 000 000000011112235677899999999999999999999999763 4555444432
Q ss_pred -CCceEEEEEEcCHHHHHHHHH
Q 025001 210 -RPTGEAFVEFANAEDSKAAMA 230 (259)
Q Consensus 210 -~~~G~afV~F~~~~~A~~Al~ 230 (259)
....+.++.+.....+..+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 264 KIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccccccccchhHHHhhhhhhc
Confidence 344445555555555555443
No 68
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.46 E-value=3e-12 Score=116.99 Aligned_cols=75 Identities=33% Similarity=0.597 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
+.|.+.|+|++++-+||.+||..|-.+..+|.+..+.+|.++|.|.|-|++.++|.+|..- +++.|.+|.|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4899999999999999999999999888899999999999999999999999999999876 99999999999875
No 69
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=5.1e-13 Score=117.90 Aligned_cols=79 Identities=15% Similarity=0.269 Sum_probs=71.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCH--HHHHHHHHh-CCCccCCeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA--EDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~--~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....+|||+||++++|++||+.+|+.||.|. .|.|+ ..+| ||||||+|.+. .++.+||.. ||..+.||.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVk-dVEIp-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVD-AVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEe-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4567899999999999999999999999986 89998 4467 89999999987 689999987 9999999999999
Q ss_pred eCCHHH
Q 025001 245 PSSHEE 250 (259)
Q Consensus 245 ~~~~~~ 250 (259)
.+.+.=
T Consensus 84 KAKP~Y 89 (759)
T PLN03213 84 KAKEHY 89 (759)
T ss_pred eccHHH
Confidence 997764
No 70
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=4.4e-13 Score=112.82 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=70.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 51 ~~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+......+|+|.||||..-|-||+.+|.+|| |++|.|+-...-||||+||+|++.+||++|-+ +++..+.||.|+|..
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3445577999999999999999999999996 66776653344588999999999999999996 789999999999988
Q ss_pred cchH
Q 025001 129 SKRQ 132 (259)
Q Consensus 129 ~~~~ 132 (259)
++..
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 7754
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.1e-13 Score=105.34 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=64.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
-++.|||+||+..+++.||...|..|+.+..+++.. .+.|||||+|+++.||+.|+. +++..|.|..|.|..++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 378999999999999999999999999877554533 456899999999999999997 78899999999997765
No 72
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=5.9e-13 Score=110.74 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.+-+||||.-|+++++|.+|+..|+.||.|+ .|+|+.|. +|+++|||||+|+++-+...|-+. +|..|+||.|.|-.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ik-rirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIK-RIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcce-eEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 5678999999999999999999999999987 89999997 999999999999999999999988 99999999999965
Q ss_pred CC
Q 025001 246 SS 247 (259)
Q Consensus 246 ~~ 247 (259)
..
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 43
No 73
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.43 E-value=2.7e-13 Score=107.32 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=74.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
...-..|.|-||-+.+|.++|+.+|++||.+- .|.|+.|. ++.++|||||.|....||+.|++. +|..|+||.|+|+
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vg-DVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVG-DVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCccc-ceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 35567899999999999999999999999874 79999998 899999999999999999999988 9999999999998
Q ss_pred eCC
Q 025001 245 PSS 247 (259)
Q Consensus 245 ~~~ 247 (259)
.+.
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 874
No 74
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.2e-12 Score=106.23 Aligned_cols=78 Identities=22% Similarity=0.166 Sum_probs=65.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCc-eEEEE-ec-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLF-VH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~-~~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
-++.++|.|.|||.+++|+||.++|.+|+. ..+.+ ++ .+|.++|||||.|.+.++|.+||. +++.-+++-.+.|..
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 346889999999999999999999999964 45654 35 599999999999999999999998 566667777778866
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 266 sk 267 (270)
T KOG0122|consen 266 SK 267 (270)
T ss_pred cC
Confidence 54
No 75
>smart00360 RRM RNA recognition motif.
Probab=99.42 E-value=9.1e-13 Score=88.22 Aligned_cols=68 Identities=26% Similarity=0.514 Sum_probs=62.2
Q ss_pred EcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEE
Q 025001 175 LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 243 (259)
Q Consensus 175 V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V 243 (259)
|+|||..+++++|+++|+.||.+. .+.+..++ ++.++|+|||+|.+.++|..|++. ++..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~-~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIE-SVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEe-EEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999999775 68888776 589999999999999999999988 999999999987
No 76
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=1.6e-12 Score=87.88 Aligned_cols=73 Identities=30% Similarity=0.481 Sum_probs=66.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 172 ~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
+|+|+|||+.+++++|+++|+.+|.+. .+.+..++.+.++|+|||+|.+.++|..|++. ++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~-~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVE-SVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEE-EEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999875 78888887778899999999999999999988 88889999999863
No 77
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=2.3e-13 Score=105.71 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=74.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
....+|||+||+..++++-|.++|-+.|.|. .+++++|. +..++|||||+|.++|+|+-|++. |...|-||+|+|..
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv-~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVV-NLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCcee-eeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 5677999999999999999999999999885 89999998 788999999999999999999998 99999999999999
Q ss_pred CC
Q 025001 246 SS 247 (259)
Q Consensus 246 ~~ 247 (259)
++
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 78
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=9.6e-13 Score=101.72 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=67.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
..++|||+||+..+++.||...|..||.+. +|.|.. .+.|||||+|+++.||+.|+.. ||+.|.|..|+|.+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lr-svWvAr----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLR-SVWVAR----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcce-eEEEee----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 467899999999999999999999999875 677765 4567999999999999999987 9999999999999886
Q ss_pred HH
Q 025001 248 HE 249 (259)
Q Consensus 248 ~~ 249 (259)
..
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 43
No 79
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=7.8e-13 Score=97.95 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=74.4
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 165 DSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 165 ~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
......+.|||.|+...+|++||.+.|..||.+. .+++-.|. +|-.+|||.|+|.+.++|++|+.. |+..|-|.+|.
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiK-NihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIK-NIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhccccc-ceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 3446789999999999999999999999999886 89998777 899999999999999999999988 99999999999
Q ss_pred EEeC
Q 025001 243 LFPS 246 (259)
Q Consensus 243 V~~~ 246 (259)
|-.+
T Consensus 146 VDw~ 149 (170)
T KOG0130|consen 146 VDWC 149 (170)
T ss_pred EEEE
Confidence 9665
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=3.7e-12 Score=90.15 Aligned_cols=81 Identities=20% Similarity=0.330 Sum_probs=67.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
|..++.|||+|||+++|.++..++|..||.+. |++ ..+...+|.|||.|++..+|.+|+. +++..+.++++.|....
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRi-G~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRI-GNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEe-cCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 45588999999999999999999999998665 554 3445568999999999999999998 67778999999997665
Q ss_pred hHHH
Q 025001 131 RQEY 134 (259)
Q Consensus 131 ~~~~ 134 (259)
..+.
T Consensus 94 ~~~~ 97 (124)
T KOG0114|consen 94 PEDA 97 (124)
T ss_pred HHHH
Confidence 5443
No 81
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.39 E-value=1.7e-12 Score=109.79 Aligned_cols=77 Identities=23% Similarity=0.470 Sum_probs=72.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
..+|||+|||+++|+++|+++|..||.+. .|.+..+. +|+++|||||+|.+.++|..|+.. ++..|.|+.|.|..+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~-~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVK-RVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCcee-EEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 68999999999999999999999999885 78998886 899999999999999999999998 9999999999999864
No 82
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=4.4e-12 Score=114.42 Aligned_cols=191 Identities=23% Similarity=0.273 Sum_probs=132.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE-EE-Eec-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VL-FVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~-~~~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+...+.+||+|||...++++++++...|+... .. +.+ .+|.++||||-+|.++.-...|+. .++..++++.+.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 44577999999999999999999999887655 22 334 579999999999999999999997 788899999998865
Q ss_pred cchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCC--CCCC-CH-------HHHHHHhccCCCcc
Q 025001 129 SKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGL--PFSA-GK-------DDIMDFFKDFVLSE 198 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nL--p~~~-te-------~dl~~~F~~~g~~~ 198 (259)
+.............++ ......+. ........+...|.+.|+ |.+. ++ +|++.-+++||.+.
T Consensus 366 A~~g~~~~~~~~~~~~----~~~~~i~~----~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~ 437 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQ----SQVPGIPL----LMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVR 437 (500)
T ss_pred hhccchhccccCCccc----cccccchh----hhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCcee
Confidence 5422111100000000 00000000 000122245566777765 2221 11 45666678899886
Q ss_pred ceEEEeeC-C---CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHH
Q 025001 199 DSIHITMN-S---DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMD 252 (259)
Q Consensus 199 ~~v~i~~~-~---~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~ 252 (259)
.|.++.. . .....|.-||+|.+.+++++|++. +|..+.||.|...+.....+.
T Consensus 438 -~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~ 495 (500)
T KOG0120|consen 438 -SVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYH 495 (500)
T ss_pred -EEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhh
Confidence 7888876 3 235678899999999999999988 999999999999999887765
No 83
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=5.7e-14 Score=109.04 Aligned_cols=75 Identities=19% Similarity=0.382 Sum_probs=69.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
.+.-|||+|||+..||.||.-.|++||.+. .|.+++|+ ||+++||||+.|++..+-.-|+.- ||..|.||.|+|-
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~v-dinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIV-DINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceE-EEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 466799999999999999999999999875 78999888 899999999999999999999966 9999999999994
No 84
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.38 E-value=1.8e-11 Score=105.85 Aligned_cols=178 Identities=14% Similarity=0.130 Sum_probs=127.5
Q ss_pred CCEEEEcCC-CCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchH
Q 025001 56 FPVVRLRGL-PFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQ 132 (259)
Q Consensus 56 ~~~vfV~nL-p~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~ 132 (259)
++.|.|.|| +..+|.+-|..+|.-|| +..|.|....+ --|.|++++..+|+-|++ .++..+.|+.|+|..+.-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 789999999 68899999999999996 66677664433 369999999999999998 7888999999999777544
Q ss_pred HHHHHHhhhccccCCCCCCCCCCcc---------CCC-C-CCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceE
Q 025001 133 EYYKAIANEVSDVRGGSPHRSIPRA---------KSH-D-EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI 201 (259)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~-~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v 201 (259)
...-.. .+.+.++.... +.. . ....-..++.+|++.|+|.+++|+||+++|..-|...
T Consensus 374 ~vqlp~--------egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~v--- 442 (492)
T KOG1190|consen 374 NVQLPR--------EGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQV--- 442 (492)
T ss_pred cccCCC--------CCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceE---
Confidence 332111 11111110000 000 0 0011224677999999999999999999999987542
Q ss_pred EEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCe-EEEEEeCCH
Q 025001 202 HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSR-YIELFPSSH 248 (259)
Q Consensus 202 ~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr-~i~V~~~~~ 248 (259)
...+- .++.+-+|.+.+.+.|+|..|+-. |++.+++. .|+|+.++.
T Consensus 443 kafkf-f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 443 KAFKF-FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred Eeeee-cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 22211 233445999999999999999977 99999876 899987653
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=2.3e-12 Score=107.29 Aligned_cols=75 Identities=17% Similarity=0.222 Sum_probs=67.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVF 127 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~ 127 (259)
.++-+||||+-|+++++|.+|+..|+.||.++ |.|+ + .+|+++|||||+|+++.+...|-+ .++..|+++.|.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 36799999999999999999999999997655 6665 5 499999999999999999999997 68889999999883
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.36 E-value=5.1e-12 Score=84.86 Aligned_cols=69 Identities=26% Similarity=0.318 Sum_probs=58.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCc-eEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEE
Q 025001 58 VVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEV 126 (259)
Q Consensus 58 ~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v 126 (259)
+|||+|||..+++++|+++|..+|. ..+.+....+.++|+|||+|.+.++|++|++ .++..+.++.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5899999999999999999999974 4565553337889999999999999999998 4557788988876
No 87
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.36 E-value=2.2e-12 Score=115.60 Aligned_cols=79 Identities=16% Similarity=0.402 Sum_probs=73.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCH
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~ 248 (259)
..|||+|+||++++++|.++|+..|.+. +++++.|+ +|+++|||||+|.+.++|.+|++. ||.+++||.|+|.++..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~-s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVL-SFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccc-eeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999999999886 89999888 899999999999999999999988 99999999999988754
Q ss_pred HH
Q 025001 249 EE 250 (259)
Q Consensus 249 ~~ 250 (259)
..
T Consensus 98 ~~ 99 (435)
T KOG0108|consen 98 RK 99 (435)
T ss_pred cc
Confidence 43
No 88
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.35 E-value=5.3e-12 Score=110.01 Aligned_cols=85 Identities=19% Similarity=0.381 Sum_probs=75.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcc-CCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...+.+||.||||++-|+||++||.. .|.++ .|.++.|.+|+++|||.|+|+++|.+++|++. |...+.||+|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~-yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVE-YVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceE-eeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 44556999999999999999999965 46776 89999999999999999999999999999998 99999999999988
Q ss_pred CCHHHHHH
Q 025001 246 SSHEEMDE 253 (259)
Q Consensus 246 ~~~~~~~~ 253 (259)
....+..+
T Consensus 121 d~d~q~~~ 128 (608)
T KOG4212|consen 121 DHDEQRDQ 128 (608)
T ss_pred cCchhhhh
Confidence 76655443
No 89
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=4.1e-12 Score=112.22 Aligned_cols=75 Identities=15% Similarity=0.090 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEecCCCCceeEEEEEeCCH--HHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHKNNKFTGEAFCVLGYP--LQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~~~g~~~G~afV~F~~~--e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
...+|||+||++++|++||+..|+.||-| .|.|++.+| +|||||+|.+. .++.+||. +++..+.||.|+|..+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 36799999999999999999999999754 577777788 89999999988 78999997 78889999999999886
Q ss_pred h
Q 025001 131 R 131 (259)
Q Consensus 131 ~ 131 (259)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 90
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=8.3e-12 Score=109.05 Aligned_cols=78 Identities=17% Similarity=0.322 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCcc-CCeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTL-GSRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l-~gr~i~V~ 244 (259)
...+-|||+.||-++.|++|.-||++.|.+- .++|++|+ +|.+||||||.|.+.++|++||+. |+++| .|+.|.|.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~-elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIY-ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhcccee-eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 5677899999999999999999999999886 79999996 899999999999999999999988 99888 58888876
Q ss_pred eC
Q 025001 245 PS 246 (259)
Q Consensus 245 ~~ 246 (259)
.+
T Consensus 160 ~S 161 (506)
T KOG0117|consen 160 VS 161 (506)
T ss_pred Ee
Confidence 54
No 91
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=7.9e-13 Score=105.64 Aligned_cols=84 Identities=25% Similarity=0.307 Sum_probs=77.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||++|..++||.-|...|-+||.+. .|.++.|. ++++||||||+|.-.|||.+||.. |+.+|-||.|+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~-dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIK-DIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchh-hcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 5678999999999999999999999999875 79999887 789999999999999999999977 99999999999999
Q ss_pred CCHHHHH
Q 025001 246 SSHEEMD 252 (259)
Q Consensus 246 ~~~~~~~ 252 (259)
+.+...+
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9876544
No 92
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=6e-13 Score=103.41 Aligned_cols=75 Identities=25% Similarity=0.301 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
++..|||+|||+++||.||.-+|++|| ||+|.++ | .+|+|+||||+.|++..+.--|+. +||..|.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 366999999999999999999999995 8888765 5 499999999999999999999996 7888999999999654
No 93
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.3e-10 Score=103.56 Aligned_cols=181 Identities=20% Similarity=0.212 Sum_probs=119.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecC---CC--Ccee---EEEEEeCCHHHHHHHHHhccccCCCe
Q 025001 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK---NN--KFTG---EAFCVLGYPLQVDFALQRNRQNMGRR 122 (259)
Q Consensus 51 ~~~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~---~g--~~~G---~afV~F~~~e~A~~Al~~~~~~~~~r 122 (259)
..+.-.+.|||++||++++|+.|...|..||.+.|-...+ .+ .++| |+|+.|+++..+..-|..--..-++-
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNY 333 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccce
Confidence 3345588999999999999999999999999877654321 11 3456 99999999999988774211111222
Q ss_pred EEEEEecchHHHHHHHhhhccccCCCCCCCCCCc--cCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhc-cCCCccc
Q 025001 123 YVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPR--AKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFK-DFVLSED 199 (259)
Q Consensus 123 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~-~~g~~~~ 199 (259)
++.|...+.++..-++ +.|-. ..-.........+.+||||++||--++.++|-.+|. -||.|.
T Consensus 334 yf~vss~~~k~k~VQI-------------rPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~- 399 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQI-------------RPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVL- 399 (520)
T ss_pred EEEEecCcccccceeE-------------EeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceE-
Confidence 2223221111100000 00000 000011223456789999999999999999999998 588875
Q ss_pred eEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-----CCCccCCeEEEEEeC
Q 025001 200 SIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-----DRMTLGSRYIELFPS 246 (259)
Q Consensus 200 ~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-----~~~~l~gr~i~V~~~ 246 (259)
.|-|-.|+ -.-++|-|=|.|.+..+-.+||.. +...+. +.|+|.+-
T Consensus 400 yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVEIkPY 451 (520)
T KOG0129|consen 400 YVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVEIKPY 451 (520)
T ss_pred EEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc-eeeeecce
Confidence 78888784 578999999999999999999974 223332 35666554
No 94
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=2.1e-11 Score=82.75 Aligned_cols=59 Identities=19% Similarity=0.360 Sum_probs=51.1
Q ss_pred HHHHHHHhc----cCCCccceEE-EeeCC-C--CCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEE
Q 025001 184 KDDIMDFFK----DFVLSEDSIH-ITMNS-D--GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 243 (259)
Q Consensus 184 e~dl~~~F~----~~g~~~~~v~-i~~~~-~--g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V 243 (259)
++||+++|+ .||.+. .|. ++.++ + +.++|||||+|.+.++|.+|++. ||..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~-~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVG-KINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCee-EEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999876 564 55444 4 89999999999999999999987 999999999986
No 95
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=3.5e-13 Score=125.56 Aligned_cols=145 Identities=19% Similarity=0.256 Sum_probs=122.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCceEEE-Ee--cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecch
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVL-FV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~-~~--~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~ 131 (259)
..+++||+||+..+.+.||...|..+++++++ +. ..+++.+|+|||+|..++++.+||......+-|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 36789999999999999999999988766632 33 347899999999999999999999865443222
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCC
Q 025001 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 211 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~ 211 (259)
...++|+|+|+..|.+.++.+++++|.+. .++++....|++
T Consensus 736 --------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~-~~~~vt~r~gkp 776 (881)
T KOG0128|consen 736 --------------------------------------KISVAISGPPFQGTKEELKSLASKTGNVT-SLRLVTVRAGKP 776 (881)
T ss_pred --------------------------------------hhhhheeCCCCCCchHHHHhhccccCCcc-ccchhhhhcccc
Confidence 12489999999999999999999999886 677888889999
Q ss_pred ceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCH
Q 025001 212 TGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248 (259)
Q Consensus 212 ~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~ 248 (259)
+|-|||.|.++.+|.+++.. +...+..+.+.|..+.+
T Consensus 777 kg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 777 KGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999999999876 88888878777777544
No 96
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=7.2e-11 Score=79.58 Aligned_cols=70 Identities=30% Similarity=0.382 Sum_probs=58.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHHh-ccccCCCeEEEEE
Q 025001 58 VVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVF 127 (259)
Q Consensus 58 ~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~-~~~~~~~r~i~v~ 127 (259)
+|+|+|||..+++++|+++|+.++ +..+.+. +..+.++|+|||+|.+.++|..|++. ++..+.++.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 489999999999999999999996 5555554 45557899999999999999999984 5556889988873
No 97
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=4.4e-11 Score=79.89 Aligned_cols=66 Identities=30% Similarity=0.390 Sum_probs=56.2
Q ss_pred EcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEE
Q 025001 61 LRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEV 126 (259)
Q Consensus 61 V~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v 126 (259)
|+|||..+++++|+++|+.+| +..+.+. ++ ++.++|+|||+|.+.++|..|+. .++..++++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 689999999999999999997 5556554 33 68999999999999999999997 4557788888876
No 98
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.21 E-value=2e-11 Score=96.89 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=68.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
.+...+|.|-||-+.++-++|+.+|++|| +.+|.|. + .++.++|||||.|....||+.||+ +++..|+|+.|.|..
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 45577999999999999999999999996 6678775 4 499999999999999999999998 788899999999855
Q ss_pred c
Q 025001 129 S 129 (259)
Q Consensus 129 ~ 129 (259)
+
T Consensus 90 a 90 (256)
T KOG4207|consen 90 A 90 (256)
T ss_pred h
Confidence 4
No 99
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=4.5e-11 Score=93.29 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=66.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||.++-+.+|.++|-+||.+. .|.|... -.+..||||+|+++.+|+.||.. +|..++|..|+|...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~-~ieLK~r--~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIR-EIELKNR--PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceE-EEEeccC--CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 4567899999999999999999999999774 5666533 23456999999999999999998 999999999999876
Q ss_pred C
Q 025001 247 S 247 (259)
Q Consensus 247 ~ 247 (259)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 3
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.18 E-value=5.7e-11 Score=106.57 Aligned_cols=75 Identities=19% Similarity=0.343 Sum_probs=67.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
+.|||||||++++|++|.++|++.+ |+.+.++ | .+|+++||||++|.+.++|+.|++ .++..++||.|+|.....
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999995 6667665 5 499999999999999999999998 677889999999976653
No 101
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.18 E-value=1e-10 Score=75.72 Aligned_cols=55 Identities=27% Similarity=0.431 Sum_probs=47.2
Q ss_pred HHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 187 IMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 187 l~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
|+++|++||.+. .|.+..+. +|+|||+|.+.++|..|++. |+..++|++|.|..|
T Consensus 1 L~~~f~~fG~V~-~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVK-KIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EE-EEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEE-EEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 689999999886 67776443 58999999999999999987 999999999999864
No 102
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.13 E-value=8.7e-11 Score=95.97 Aligned_cols=168 Identities=17% Similarity=0.159 Sum_probs=121.3
Q ss_pred CCEEEEcCCCCCCCHHH-H--HHHhcCC-CceEEEE-ecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 56 FPVVRLRGLPFDCTEVD-V--AEFFHGL-DIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~-L--~~~F~~~-~iv~v~~-~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
-...++.++-.++..+- | ...|+.+ -.+...+ .+..+.-++++|+.|.....-.++-. .++++++.+.|++...
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 34556677655555544 3 5667766 3333333 35567778999999999888888875 5677788777665322
Q ss_pred chHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-C
Q 025001 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D 208 (259)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~ 208 (259)
+ -| . .... .+-.....+||.+.|..+++++-|-..|.+|-... ..++++++ +
T Consensus 176 t--sw--------------------e--dPsl--~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~-~akviRdkRT 228 (290)
T KOG0226|consen 176 T--SW--------------------E--DPSL--AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQ-KAKVIRDKRT 228 (290)
T ss_pred c--cc--------------------C--Cccc--ccCccccceeecccccccccHHHHHHHHHhccchh-hccccccccc
Confidence 1 00 0 0000 01124567899999999999999999999986432 45666666 8
Q ss_pred CCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHH
Q 025001 209 GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 250 (259)
Q Consensus 209 g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~ 250 (259)
|+++||+||.|.+..++.+|++. ||++++.|+|.+..+.-++
T Consensus 229 gKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 229 GKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred cccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 99999999999999999999988 9999999999998776655
No 103
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=4.5e-11 Score=102.16 Aligned_cols=75 Identities=25% Similarity=0.390 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
-++|||+.+.|...|+.|+..|.+||.+. +|.+--|+ +++++|||||+|+-+|.|.-|++. ||..|+||.|.|-.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIK-SInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIK-SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcc-eeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 46799999999999999999999999986 89998888 999999999999999999999988 99999999999953
No 104
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=2.1e-11 Score=97.46 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=111.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEec-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
++.++||||.||...++|+-|.++|-+.|+| .|.|.+ +++..+ ||||.|.++-.+.-|++ +|+..+.++.+.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~--- 81 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR--- 81 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc---
Confidence 4458899999999999999999999999855 566654 577777 99999999999999998 5666677777766
Q ss_pred chHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcC----CCCCCCHHHHHHHhccCCCccceEEEee
Q 025001 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRG----LPFSAGKDDIMDFFKDFVLSEDSIHITM 205 (259)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~n----Lp~~~te~dl~~~F~~~g~~~~~v~i~~ 205 (259)
+++.+| |...++++.+.+.|+.-|.++ .+++..
T Consensus 82 ------------------------------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~-~~R~~~ 118 (267)
T KOG4454|consen 82 ------------------------------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIE-GVRIPT 118 (267)
T ss_pred ------------------------------------------ccccCCCcchhhhhcchhhheeeecccCCCC-Cccccc
Confidence 233444 667889999999999998876 789998
Q ss_pred CCCCCCceEEEEEEcCHHHHHHHHHh-CCCc
Q 025001 206 NSDGRPTGEAFVEFANAEDSKAAMAK-DRMT 235 (259)
Q Consensus 206 ~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~ 235 (259)
+.+|+++-++|+.+...-..-.|+.. .+..
T Consensus 119 ~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 119 DNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred cccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 88999999999999887777777765 4443
No 105
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=2.7e-10 Score=93.79 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=71.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CC-CccCC--eEEEEE
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DR-MTLGS--RYIELF 244 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~-~~l~g--r~i~V~ 244 (259)
..++|||+-|...-.|+|++.+|..||.++ ++.+.+..+|.+||||||.|.+..+|..||.. || ..+-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~-e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIE-ECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcc-eeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 567899999999999999999999999886 89999999999999999999999999999987 76 45554 668888
Q ss_pred eCCHHH
Q 025001 245 PSSHEE 250 (259)
Q Consensus 245 ~~~~~~ 250 (259)
.+..+.
T Consensus 97 ~ADTdk 102 (371)
T KOG0146|consen 97 FADTDK 102 (371)
T ss_pred eccchH
Confidence 885543
No 106
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.05 E-value=1.7e-10 Score=98.89 Aligned_cols=171 Identities=18% Similarity=0.156 Sum_probs=127.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEE-Ee-cCCCCceeEEEEEeCCHHHHHHHHHhccc-cCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVL-FV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQ-NMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~-~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~-~~~~r~i~v~~~~ 130 (259)
..++.|++++.+.+.+.++..++...+ .+... .. .....++|+++|.|+..+.+..||...+. .+.++.+..-...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 478999999999999999999998875 45543 22 45778999999999999999999998775 4444444331111
Q ss_pred hHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEE-EcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-C
Q 025001 131 RQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILR-LRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D 208 (259)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~ 208 (259)
... ......... .......+++ |.||++++++++|+++|..+|.+. .|+++.++ +
T Consensus 167 ~~~---------------------~~~~n~~~~-~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~-~~r~~~~~~s 223 (285)
T KOG4210|consen 167 RRG---------------------LRPKNKLSR-LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEIT-SVRLPTDEES 223 (285)
T ss_pred ccc---------------------ccccchhcc-cccCccccceeecccccccchHHHhhhccCcCcce-eeccCCCCCc
Confidence 000 000000000 1123344555 999999999999999999999876 78888766 7
Q ss_pred CCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCCH
Q 025001 209 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248 (259)
Q Consensus 209 g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~~ 248 (259)
|.++|||||.|.+...+..|+......++++++.+....+
T Consensus 224 ~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 224 GDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 9999999999999999999987677889999998866544
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=3.4e-10 Score=84.02 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=65.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEE--ecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLF--VHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~--~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
.-.|||.|+...+||+||.+.|..||.+. +.+ ..++|-.+|||.|+|++.++|++|+. +|+..|-+..|.|.++-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 66999999999999999999999997554 543 35799999999999999999999997 67788989999996653
No 108
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.05 E-value=9.4e-10 Score=87.48 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.....++|..+|.-..+.+|..+|.+||-+...+++-++. ||.++|||||+|++++.|.-|-+. |+..|.++.|.+..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 4566799999999999999999999995333366775555 999999999999999999999887 99999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 9887
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.03 E-value=9.8e-10 Score=74.50 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=48.0
Q ss_pred CHHHHHHHhc----CCC-ceEEE--Eec-CC--CCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEE
Q 025001 69 TEVDVAEFFH----GLD-IVDVL--FVH-KN--NKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEV 126 (259)
Q Consensus 69 te~~L~~~F~----~~~-iv~v~--~~~-~~--g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v 126 (259)
.+++|+++|+ .|| +.++. +++ .+ |+++|+|||+|.+.++|.+|+. +++..+.||.|.+
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3689999998 886 44553 344 35 8999999999999999999998 7888999999876
No 110
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.9e-10 Score=91.13 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
...+||||++|..++||.-|...|-+|| |.+|.+. | .+++.+|||||+|.-.|||.+||. ++...|-||.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3477999999999999999999999995 7777653 4 689999999999999999999997 7788999999999766
Q ss_pred ch
Q 025001 130 KR 131 (259)
Q Consensus 130 ~~ 131 (259)
.+
T Consensus 88 kP 89 (298)
T KOG0111|consen 88 KP 89 (298)
T ss_pred CC
Confidence 43
No 111
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.98 E-value=1.7e-09 Score=89.77 Aligned_cols=84 Identities=20% Similarity=0.366 Sum_probs=74.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
....+|+|.|||+.++++||+++|..||.+. .+.+-.++.|++.|.|-|.|...+||.+|++. |+..|+|+.+.+.+.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~-r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELK-RVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccce-EEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 3457899999999999999999999998554 67788888999999999999999999999998 999999999999887
Q ss_pred CHHHHH
Q 025001 247 SHEEMD 252 (259)
Q Consensus 247 ~~~~~~ 252 (259)
...-+.
T Consensus 160 ~~~~~~ 165 (243)
T KOG0533|consen 160 SSPSQS 165 (243)
T ss_pred cCcccc
Confidence 655443
No 112
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.95 E-value=7.7e-10 Score=92.12 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=65.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHH
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 249 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~ 249 (259)
.+|||+|||..+++.+|+.+|++||.|. .+.|+++ ||||+.++...|+-||+. |+.+|+|..|.|..++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVl-ECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVL-ECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceE-eeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 3699999999999999999999999875 7889866 999999999999999985 999999999999988765
No 113
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.95 E-value=3.4e-10 Score=97.47 Aligned_cols=83 Identities=23% Similarity=0.386 Sum_probs=73.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
...+|||++|++++|++.|+++|.+||.+. .+.+++|+ +++++||+||+|.+++...++|....+.|.||.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~-d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVT-DCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCcee-eEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 567899999999999999999999999886 56666666 8999999999999999999999887899999999999987
Q ss_pred HHHHH
Q 025001 248 HEEMD 252 (259)
Q Consensus 248 ~~~~~ 252 (259)
+.+..
T Consensus 84 ~r~~~ 88 (311)
T KOG4205|consen 84 SREDQ 88 (311)
T ss_pred Ccccc
Confidence 76544
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.92 E-value=4.1e-08 Score=85.40 Aligned_cols=195 Identities=17% Similarity=0.219 Sum_probs=124.5
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCC-C-eEEE
Q 025001 50 VSQPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMG-R-RYVE 125 (259)
Q Consensus 50 ~~~~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~-~-r~i~ 125 (259)
..+++.--.++|.|+-+-++-|-|..+|+.||.|. |+-..++... -|.|+|.+.+.|+.|-. .+|..|- | =.++
T Consensus 144 ~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~F--QALvQy~d~~sAq~AK~aLdGqnIyngcCtLr 221 (492)
T KOG1190|consen 144 EDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGF--QALVQYTDAVSAQAAKLALDGQNIYNGCCTLR 221 (492)
T ss_pred cCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccch--hhhhhccchhhHHHHHHhccCCcccCceeEEE
Confidence 34456677899999999999999999999998765 4434443222 49999999999999975 5555432 2 2233
Q ss_pred EEecchH----HHHHHHhhhc-------c-----------ccCC------CCCCCCCCcc---CCCCCCCCCCCCccEEE
Q 025001 126 VFRSKRQ----EYYKAIANEV-------S-----------DVRG------GSPHRSIPRA---KSHDEGKDSAVHTGILR 174 (259)
Q Consensus 126 v~~~~~~----~~~~~~~~~~-------~-----------~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~~i~ 174 (259)
+..+.-. +|.....+.. . ...+ +.|....... ......-........|-
T Consensus 222 Id~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vll 301 (492)
T KOG1190|consen 222 IDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLL 301 (492)
T ss_pred eehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEE
Confidence 3222110 0100000000 0 0000 0000000000 00000000111257788
Q ss_pred EcCCC-CCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHH
Q 025001 175 LRGLP-FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEM 251 (259)
Q Consensus 175 V~nLp-~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~ 251 (259)
|.||. +.+|.+-|.-+|+-||.+. .|.|..++. --|.|++.+...|+-|++. +|..+.|+.|+|.+++-.++
T Consensus 302 vsnln~~~VT~d~LftlFgvYGdVq-RVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 302 VSNLNEEAVTPDVLFTLFGVYGDVQ-RVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred EecCchhccchhHHHHHHhhhcceE-EEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 89885 6699999999999999885 888887652 2599999999999999987 99999999999999875543
No 115
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.89 E-value=5.1e-09 Score=84.59 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=68.8
Q ss_pred CccEEEEcCCCCCCCHHHHHH----HhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEE
Q 025001 169 HTGILRLRGLPFSAGKDDIMD----FFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 243 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~----~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V 243 (259)
+..+|||.||+..+..++|+. +|++||.+. .|+..++.+.+|-|||.|.+.+.|-.|+.. +|.-+-|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~il---dI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKIL---DISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeE---EEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 444999999999999999998 999999763 455556789999999999999999999987 999999999999
Q ss_pred EeCCHH
Q 025001 244 FPSSHE 249 (259)
Q Consensus 244 ~~~~~~ 249 (259)
.++..+
T Consensus 85 qyA~s~ 90 (221)
T KOG4206|consen 85 QYAKSD 90 (221)
T ss_pred ecccCc
Confidence 998654
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.88 E-value=1e-08 Score=66.15 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=43.6
Q ss_pred HHHHhcCCCceE-EEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 73 VAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 73 L~~~F~~~~iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
|+++|++||.+. +.+.... +|+|||+|.+.++|++|++ .++..++|+.|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 688999997555 5554433 5899999999999999997 788899999999864
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.87 E-value=1.4e-07 Score=81.29 Aligned_cols=163 Identities=19% Similarity=0.191 Sum_probs=116.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEE-EecCCCCceeEEEEEeCCHHHHHHHHHh---ccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVL-FVHKNNKFTGEAFCVLGYPLQVDFALQR---NRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~-~~~~~g~~~G~afV~F~~~e~A~~Al~~---~~~~~~~r~i~v~~ 128 (259)
++.+..|.|+||-..++|.||.+-.+.||.+..+ .+.. +..|.|+|++.+.|+.++.. +.-++.|..-.+..
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc----cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 4556699999999999999999999999877643 3322 23799999999999999964 33356776655555
Q ss_pred cchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEE--EEcCCCCCCCHHHHHHHhccCCCccceEEEeeC
Q 025001 129 SKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGIL--RLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~ 206 (259)
++.+.... .+.+.......| -|-|--|.+|-+-|..+....|.+. .|.|.+.
T Consensus 104 Stsq~i~R-------------------------~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVl-RIvIfkk 157 (494)
T KOG1456|consen 104 STSQCIER-------------------------PGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVL-RIVIFKK 157 (494)
T ss_pred chhhhhcc-------------------------CCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceE-EEEEEec
Confidence 54332210 011122333444 3456668899999999999999885 6666543
Q ss_pred CCCCCceEEEEEEcCHHHHHHHHHh-CCCccCC--eEEEEEeCCHH
Q 025001 207 SDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS--RYIELFPSSHE 249 (259)
Q Consensus 207 ~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~g--r~i~V~~~~~~ 249 (259)
+|- .|.|+|++.+.|++|-.. ||..|-. -+|.|..+++.
T Consensus 158 -ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 158 -NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred -cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 443 699999999999999977 9987743 56777777664
No 118
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=7.7e-09 Score=82.33 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=66.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCC-CceEE-EE-ec-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGL-DIVDV-LF-VH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~-~iv~v-~~-~~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
...++|.-||+-+.+.+|..+|.++ |.+.. ++ .+ ++|.|+|||||+|++++.|.-|-+ +|+..|.++.+.|.-..
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 5589999999999999999999999 77764 44 33 599999999999999999999997 77778899999886554
Q ss_pred hH
Q 025001 131 RQ 132 (259)
Q Consensus 131 ~~ 132 (259)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 44
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1.1e-08 Score=87.26 Aligned_cols=75 Identities=24% Similarity=0.290 Sum_probs=66.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh--CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK--DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~--~~~~l~gr~i~V~~ 245 (259)
..-.+|||+||-..+++.||+++|-+||.++ +|.+... +|+|||+|.+.+.|+.|..+ |...|+|+.|.|.+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeir-si~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIR-SIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCee-eEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 4567999999988999999999999999987 7777643 46999999999999999976 88899999999998
Q ss_pred CCH
Q 025001 246 SSH 248 (259)
Q Consensus 246 ~~~ 248 (259)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 877
No 120
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.76 E-value=2.6e-08 Score=84.97 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccc-------eEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeE
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSED-------SIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRY 240 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~-------~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~ 240 (259)
....|||+|||.++|.+++.++|++||++.. .|.|..+..|..+|-|.|.|-..++..-|++. ++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 3456999999999999999999999995532 37788888999999999999999999999998 999999999
Q ss_pred EEEEeCC
Q 025001 241 IELFPSS 247 (259)
Q Consensus 241 i~V~~~~ 247 (259)
|+|..|.
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9998774
No 121
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.75 E-value=9.6e-07 Score=76.23 Aligned_cols=178 Identities=16% Similarity=0.202 Sum_probs=119.7
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLP-FDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp-~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
.+.|.+.|-+|. -++.-+-|..+|--|| +..|.++.. ..|.|.|++.+..++++|+. +++..+-|..|.|..+.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT---k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT---KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec---ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 458999999997 5567788999999996 555766632 13699999999999999998 67777778888887664
Q ss_pred hHHHHHHHhhhccccCCCCCC-CC--CCccCCCC-----CCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEE
Q 025001 131 RQEYYKAIANEVSDVRGGSPH-RS--IPRAKSHD-----EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIH 202 (259)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~-----~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~ 202 (259)
..-.... .. -.- ..+++. .. ..+...+. ...--..++++|+.-|.|..+||+.|.++|...+....+|+
T Consensus 362 Q~~v~~~-~p-flL-pDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 362 QNFVSPV-QP-FLL-PDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVK 438 (494)
T ss_pred ccccccC-Cc-eec-CCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEE
Confidence 3211100 00 000 000000 00 00000000 00111246789999999999999999999998876566788
Q ss_pred EeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCC
Q 025001 203 ITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS 238 (259)
Q Consensus 203 i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~g 238 (259)
+...++-++. -|.++|++.++|..||.+ |...+.+
T Consensus 439 vFp~kserSs-sGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 439 VFPLKSERSS-SGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred eecccccccc-cceeeeehHHHHHHHHHHhccccccC
Confidence 8766644432 589999999999999987 7766654
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.74 E-value=2.7e-08 Score=92.65 Aligned_cols=78 Identities=22% Similarity=0.407 Sum_probs=68.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
..++||||++||.++++.||..+|+.||.+. +|.+. -++|||||.+.+..+|.+||++ ++..+.++.|+|.++
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiq-Si~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQ-SIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccce-eEeec-----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 4578999999999999999999999999886 66665 3678999999999999999988 999999999999887
Q ss_pred CHHHH
Q 025001 247 SHEEM 251 (259)
Q Consensus 247 ~~~~~ 251 (259)
-..-+
T Consensus 493 ~g~G~ 497 (894)
T KOG0132|consen 493 VGKGP 497 (894)
T ss_pred ccCCc
Confidence 54433
No 123
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.72 E-value=3.4e-08 Score=88.40 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=64.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeC-CCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~-~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
....|||+|||.+++..+|+++|..||.|. ...|... ..++...||||+|.+.++++.||+.+-..+++|.|.|..-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik-~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIK-EGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhccccc-ccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 344599999999999999999999999765 4444432 3455458999999999999999999999999999999654
No 124
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.72 E-value=3.4e-08 Score=88.39 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=62.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCceE---EEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEe
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~iv~---v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~ 128 (259)
...+|||+|||+++++++|+++|+.||.+. |.+..+.+++..||||+|.+.++++.||+.+...++++.+.|..
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEE 363 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEe
Confidence 356799999999999999999999997554 34444456655999999999999999999998889999999844
No 125
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.71 E-value=2.7e-08 Score=82.77 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
.....+||+|+.+.+|.+++...|+.||.+. .|.++.+. .|.++|||||+|.+.+.++.|+.+|+..|.|+.|.|...
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~-~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGIN-RVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCcc-ceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 4567899999999999999999999999875 78888888 568999999999999999999999999999999999764
No 126
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.6e-08 Score=84.34 Aligned_cols=81 Identities=23% Similarity=0.247 Sum_probs=72.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEE
Q 025001 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 243 (259)
Q Consensus 166 ~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V 243 (259)
...+.+.|||--|.+-+|++||.-+|+.||.+. ++.+++|. +|-+--||||+|++.+++++|.-+ ++..|+.|.|.|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~-sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIV-SCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccce-eeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 346788999999999999999999999999886 78888877 899999999999999999999965 999999999999
Q ss_pred EeCC
Q 025001 244 FPSS 247 (259)
Q Consensus 244 ~~~~ 247 (259)
-.+.
T Consensus 314 DFSQ 317 (479)
T KOG0415|consen 314 DFSQ 317 (479)
T ss_pred ehhh
Confidence 6653
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.70 E-value=8.1e-08 Score=86.78 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=69.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...+.|+|++|...+-..||+.+|++||.|. ...++.+. +--.+.|+||++.+.++|.+||+. |.+.|+||.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVv-GAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVV-GAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhccee-ceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 4467899999999999999999999999875 67777655 334567999999999999999987 99999999999987
Q ss_pred CCH
Q 025001 246 SSH 248 (259)
Q Consensus 246 ~~~ 248 (259)
++-
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 753
No 128
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.68 E-value=4.5e-08 Score=91.17 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=61.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
++||||++|+..++|.||.++|+.||.+. |++. .++|||||.+.+..+|.+||. +.+..+.++.|+|.++.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 88999999999999999999999997554 5544 346899999999999999997 55667999999997764
No 129
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.65 E-value=8.9e-08 Score=79.63 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=65.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEE-ecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~-~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
..+|+|.|||+.++++||+++|..++ +..+.+ +++.|++.|.|=|.|...+||.+|++ .++..++|+.|.+.....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 47899999999999999999999995 434443 58899999999999999999999998 677679999998866543
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.54 E-value=1.2e-06 Score=62.78 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=65.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccC--CCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccC----CeEEE
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG----SRYIE 242 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~--g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~----gr~i~ 242 (259)
++|.|+|+|...|.++|.+++... |.- +.+.++.|. ++.+.|||||.|.+++.|.+-.+. +|.... .+..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~y-DF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKY-DFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcc-eEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 589999999999999999988663 222 357777777 678999999999999999998887 888775 56677
Q ss_pred EEeCCHHHHHH
Q 025001 243 LFPSSHEEMDE 253 (259)
Q Consensus 243 V~~~~~~~~~~ 253 (259)
|..|.-+-...
T Consensus 81 i~yAriQG~~a 91 (97)
T PF04059_consen 81 ISYARIQGKDA 91 (97)
T ss_pred EehhHhhCHHH
Confidence 77776654433
No 131
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=4.4e-08 Score=78.70 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
....+|||.||-..++|+-|.++|-+-|.|. .|.|+.+.+++.+ ||||.|.++-...-|+++ ||-.|.++.|.|++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~-kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVY-KVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceE-EEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4567899999999999999999999999875 7889988899988 999999999999999999 999999999998765
Q ss_pred C
Q 025001 247 S 247 (259)
Q Consensus 247 ~ 247 (259)
+
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 4
No 132
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.49 E-value=1.3e-07 Score=77.62 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCC-CceE-EEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGL-DIVD-VLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~-~iv~-v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+.++.+||.+.|..+++.+-|-..|..| ..-. -++. .++|+++||+||-|.++.|+..|+. +++.+++.|+|.+.+
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 4568899999999999999999999988 3332 2334 4799999999999999999999996 889999999999877
Q ss_pred cchHH
Q 025001 129 SKRQE 133 (259)
Q Consensus 129 ~~~~~ 133 (259)
+..++
T Consensus 267 S~wke 271 (290)
T KOG0226|consen 267 SEWKE 271 (290)
T ss_pred hhHHh
Confidence 76544
No 133
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.45 E-value=1e-06 Score=71.11 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=64.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC--CCCCceEEEEEEcCHHHHHHHHHh-CCCccC---CeEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS--DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG---SRYI 241 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~--~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~---gr~i 241 (259)
...++|||.|||.++...+|..+|..|---+ ...|.... ..-++-+|||.|.+..+|..|+.. ||..|+ +..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYE-gslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYE-GSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCcc-ceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3478999999999999999999999985433 33444332 224567999999999999999988 999986 7888
Q ss_pred EEEeCCHH
Q 025001 242 ELFPSSHE 249 (259)
Q Consensus 242 ~V~~~~~~ 249 (259)
++.+++..
T Consensus 111 hiElAKSN 118 (284)
T KOG1457|consen 111 HIELAKSN 118 (284)
T ss_pred EeeehhcC
Confidence 88877544
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=1.9e-07 Score=88.44 Aligned_cols=153 Identities=18% Similarity=0.130 Sum_probs=115.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEecC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
.+.|||++||+.++++.+|+..|..+|.++ |.|..+ -+.-.-||||.|.+.+.+-.|.. ..+..|+.-.+.+...
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG-- 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG-- 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc--
Confidence 388999999999999999999999997665 656543 45555699999999999988885 4444444333222100
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCC
Q 025001 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRP 211 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~ 211 (259)
.........+++++|+.-+....|...|..||.+. .|.+ ..|.+
T Consensus 449 --------------------------------~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir-~Idy---~hgq~ 492 (975)
T KOG0112|consen 449 --------------------------------QPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIR-IIDY---RHGQP 492 (975)
T ss_pred --------------------------------ccccccceeeccCCCCCCChHHHHHHHhhccCcce-eeec---ccCCc
Confidence 00224567899999999999999999999999875 3332 23444
Q ss_pred ceEEEEEEcCHHHHHHHHHh-CCCccCC--eEEEEEeCC
Q 025001 212 TGEAFVEFANAEDSKAAMAK-DRMTLGS--RYIELFPSS 247 (259)
Q Consensus 212 ~G~afV~F~~~~~A~~Al~~-~~~~l~g--r~i~V~~~~ 247 (259)
||+|.|++...|+.|+.. -+..|+| +.|+|-++.
T Consensus 493 --yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 493 --YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred --ceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 999999999999999977 8888876 668877664
No 135
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=8.1e-07 Score=76.02 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=59.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEecCCCCceeEEEEEeCCHHHHHHHHHh--ccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQR--NRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~~--~~~~~~~r~i~v~~~~~ 131 (259)
-.+|||+||-..++|.||+++|.+||.++ +.+... +|+|||+|.+.+.|+.|.++ +...++|+.|.|.+...
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 56999999988999999999999997665 555543 35999999999999999974 55578999999976653
No 136
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.7e-07 Score=77.10 Aligned_cols=75 Identities=20% Similarity=0.115 Sum_probs=65.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEE-ec-CCCCceeEEEEEeCCHHHHHHHH-HhccccCCCeEEEEEec
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLF-VH-KNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~-~~-~~g~~~G~afV~F~~~e~A~~Al-~~~~~~~~~r~i~v~~~ 129 (259)
+...|||..|.+-+|.+||.-+|+.|| |+.|.+ .+ ++|-+--||||+|.+.+++++|. ++++..|+.|.|.|..+
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 366999999999999999999999996 556654 44 69999999999999999999998 57888999999999544
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.37 E-value=7.3e-07 Score=74.21 Aligned_cols=76 Identities=16% Similarity=0.098 Sum_probs=65.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEE-ec-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLF-VH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~-~~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
.+...|||+|+-+.+|-+++...|+.|+-+. +.+ .+ ..|+++|||||+|.+.+.++.|+.+++..+.++.|.|...
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 3477999999999999999999999996443 433 34 4778999999999999999999999999999999998543
No 138
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.32 E-value=1.7e-06 Score=78.49 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=64.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
.+.|||.+|...+--.||+.+|++|| +|...++ + ++--.+.|+||++.+.++|.++|+ ++...|.||.|.|.++..
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 78999999999999999999999995 6654443 3 455567899999999999999997 788899999999977653
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.31 E-value=4.4e-06 Score=59.85 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=50.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCC--CceEEE-E-ec-CCCCceeEEEEEeCCHHHHHHHHH-hccccC
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGL--DIVDVL-F-VH-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNM 119 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~--~iv~v~-~-~~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~ 119 (259)
+||.|+|||...|.++|.+++... +-.+.. + +| .++.+.|||||-|.+++.|.+-.+ .++..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 699999999999999999998754 444432 2 24 688999999999999999998876 565544
No 140
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.24 E-value=5.5e-06 Score=60.55 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=47.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh---C---CCccCCeEEEEE
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK---D---RMTLGSRYIELF 244 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~---~---~~~l~gr~i~V~ 244 (259)
..|+|.|++..++.++|++.|+.||.|. .|.+....+ .|||.|.++++|+.|+.. . +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~-yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVA-YVDFSRGDT-----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EE-EEE--TT-S-----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcc-eEEecCCCC-----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4689999999999999999999999664 666654322 699999999999999964 4 567888888888
Q ss_pred eCCHHHHHHH
Q 025001 245 PSSHEEMDEA 254 (259)
Q Consensus 245 ~~~~~~~~~~ 254 (259)
+.+..+-...
T Consensus 76 vLeGeeE~~Y 85 (105)
T PF08777_consen 76 VLEGEEEEEY 85 (105)
T ss_dssp ---HHHHHHH
T ss_pred ECCCHHHHHH
Confidence 8877665444
No 141
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.22 E-value=1.2e-06 Score=71.39 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=59.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCH
Q 025001 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248 (259)
Q Consensus 172 ~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~ 248 (259)
.+||++||+.+.+.||..||..||.+. .|.+. .||+||+|.+..+|.-|+.. |+..|+|-.+.|..+..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~-d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIP-DADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccc-cceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 589999999999999999999999775 45554 36999999999999999976 99999988777776653
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=1.5e-06 Score=78.59 Aligned_cols=71 Identities=27% Similarity=0.433 Sum_probs=62.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
.....+|+|-|||.++++++|..+|+.||.|. .|+.... .+|-.||+|-+.-+|++|++. ++.++.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir-~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIR-EIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchh-hhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 35678999999999999999999999999886 4665544 456899999999999999988 99999998887
No 143
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=7e-08 Score=90.81 Aligned_cols=166 Identities=16% Similarity=0.082 Sum_probs=119.4
Q ss_pred CCCEEEEcCCCCCCCHH-HHHHHhcCCCceE-EEEec-CCCCcee-EEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEV-DVAEFFHGLDIVD-VLFVH-KNNKFTG-EAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~-~L~~~F~~~~iv~-v~~~~-~~g~~~G-~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
......+.|+.+..... ..+..|.+++.++ |.+.. ......+ ++++.+....+++.|....+..++++.+.|..+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCC
Confidence 35567778887666666 6788999997665 55543 2223333 8999999999999999988888998888876555
Q ss_pred hHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeC-CCC
Q 025001 131 RQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDG 209 (259)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~-~~g 209 (259)
....... ..-.++......++||+||++.+.++||...|..+|.++ .|++... .++
T Consensus 650 ~~~~~~~----------------------~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e-~vqi~~h~n~~ 706 (881)
T KOG0128|consen 650 AEEKEEN----------------------FKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIE-VVQIVIHKNEK 706 (881)
T ss_pred chhhhhc----------------------cCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhh-hHHHHHHhhcc
Confidence 4331100 000111224457899999999999999999999999775 5666522 278
Q ss_pred CCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEE
Q 025001 210 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 243 (259)
Q Consensus 210 ~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V 243 (259)
+.+|.|||+|..++++.+|+.. +++.++...+-|
T Consensus 707 ~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 707 RFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred ccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 9999999999999999999998 666665333333
No 144
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.11 E-value=3.2e-06 Score=72.84 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=71.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccc-------eEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccC
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED-------SIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG 237 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~-------~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~ 237 (259)
.....+|||.+||.++++.+|.++|.++|++.. .|.|-++. |+++||-|.|.|.+...|+.|+.- +++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 355678999999999999999999999985531 24455555 899999999999999999999998 999999
Q ss_pred CeEEEEEeCCHH
Q 025001 238 SRYIELFPSSHE 249 (259)
Q Consensus 238 gr~i~V~~~~~~ 249 (259)
|..|.|+++...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999888654
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.10 E-value=1.9e-05 Score=54.22 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=45.8
Q ss_pred cEEEEcCCCCCCCHHHH----HHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 171 GILRLRGLPFSAGKDDI----MDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl----~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
..|+|.|||-+.+...| +.++..+|-.. +.|. .|.|+|.|.+++.|.+|.+. +|..+-|+.|.|+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV--l~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV--LSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--E--EE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEE--EEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 36999999999988665 56777888532 3332 25799999999999999988 99999999999988
Q ss_pred CCH
Q 025001 246 SSH 248 (259)
Q Consensus 246 ~~~ 248 (259)
...
T Consensus 74 ~~~ 76 (90)
T PF11608_consen 74 SPK 76 (90)
T ss_dssp S--
T ss_pred cCC
Confidence 743
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=1e-05 Score=73.30 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=54.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVE 125 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~ 125 (259)
.+.++|+|-|||.++++++|+.+|+.||.| +|. .+-..+|..||+|-+..+|+.|++ .+...+.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir---~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR---ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhh---cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 347899999999999999999999999654 433 344556899999999999999997 455556555544
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.94 E-value=1.1e-05 Score=70.23 Aligned_cols=184 Identities=12% Similarity=0.044 Sum_probs=118.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEec-C----CCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecch
Q 025001 58 VVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVH-K----NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 58 ~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~-~----~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~ 131 (259)
.|-|.||.+.+|.+++..+|.-+| |.++.|+. . -....-.|||.|.+...+..|..+.+..+-++.|.|.+.-.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 899999999999999999998886 55566552 1 12345689999999999999999888887778777765432
Q ss_pred H----H-HHHHHhhhccccCCCCCCCCCCccC---------------CCCCC----CCCCCCccEEEEcCCCCCCCHHHH
Q 025001 132 Q----E-YYKAIANEVSDVRGGSPHRSIPRAK---------------SHDEG----KDSAVHTGILRLRGLPFSAGKDDI 187 (259)
Q Consensus 132 ~----~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~----~~~~~~~~~i~V~nLp~~~te~dl 187 (259)
. . .+.........++--++....+... +..+. .....-..+|+|.+|+..+...++
T Consensus 89 ~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~ 168 (479)
T KOG4676|consen 89 EVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPES 168 (479)
T ss_pred CCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhh
Confidence 1 1 1111111111111111111000000 00000 001122368999999999999999
Q ss_pred HHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEe
Q 025001 188 MDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245 (259)
Q Consensus 188 ~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~ 245 (259)
.++|..+|.+. ..++. .+...-+|-|+|........|+..+|..+.-....+.+
T Consensus 169 ~e~f~r~Gev~-ya~~a---sk~~s~~c~~sf~~qts~~halr~~gre~k~qhsr~ai 222 (479)
T KOG4676|consen 169 GESFERKGEVS-YAHTA---SKSRSSSCSHSFRKQTSSKHALRSHGRERKRQHSRRAI 222 (479)
T ss_pred hhhhhhcchhh-hhhhh---ccCCCcchhhhHhhhhhHHHHHHhcchhhhhhhhhhhh
Confidence 99999999764 44443 33334478899999999999999988877644444433
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.93 E-value=3e-05 Score=72.20 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=67.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC----CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS----DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~----~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
...+.|||.||++.++++.|...|..||.+. +|+|+.-. ..+.+-||||-|.+..||++|++. +|..+.++.+.
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPla-svKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLA-SVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCccc-ceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3467799999999999999999999999875 77776433 345667999999999999999988 99999999988
Q ss_pred EEeCC
Q 025001 243 LFPSS 247 (259)
Q Consensus 243 V~~~~ 247 (259)
+-.+.
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 86653
No 149
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.89 E-value=2.2e-06 Score=75.21 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=115.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCce-E-EEEecCCCCceeEEEEEeCCHHHHHHHHHh-ccc-cCCCeEEEEEecchHH
Q 025001 58 VVRLRGLPFDCTEVDVAEFFHGLDIV-D-VLFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQ-NMGRRYVEVFRSKRQE 133 (259)
Q Consensus 58 ~vfV~nLp~~~te~~L~~~F~~~~iv-~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~~-~~~-~~~~r~i~v~~~~~~~ 133 (259)
.+|++||....+-+||..+|....+- . -.++ ..|||||...+..-|.+|++. +++ .+.|..++|..+..+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 68999999999999999999876332 1 2222 137999999999999999985 444 5788888885443221
Q ss_pred HHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEe-eCCCCCCc
Q 025001 134 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHIT-MNSDGRPT 212 (259)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~-~~~~g~~~ 212 (259)
..++++-|+|+|+..-++-|-.|...||.++ .+..+ .+.. .
T Consensus 78 ----------------------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve-~~eqvnt~~e---t 119 (584)
T KOG2193|consen 78 ----------------------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVE-NCEQVNTDSE---T 119 (584)
T ss_pred ----------------------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHh-HhhhhccchH---H
Confidence 1244588999999999999999999999887 44433 2321 1
Q ss_pred eEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHH
Q 025001 213 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMD 252 (259)
Q Consensus 213 G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~ 252 (259)
-.-=|+|.+.+.+..||.+ ++..|.+..+.|.+...++..
T Consensus 120 avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~~ 160 (584)
T KOG2193|consen 120 AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQNA 160 (584)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhhh
Confidence 1344678899999999988 999999999999888666543
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.85 E-value=6.7e-05 Score=69.92 Aligned_cols=77 Identities=10% Similarity=0.018 Sum_probs=60.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEe--c---CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFV--H---KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVE 125 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~--~---~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~ 125 (259)
.+..+.|||+||+..++|+.|..-|..||++. +.|+ + ...+.+-|+||.|-+..||++|++ +++..+.+..+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34477999999999999999999999998654 5444 2 134556799999999999999998 566677777777
Q ss_pred EEec
Q 025001 126 VFRS 129 (259)
Q Consensus 126 v~~~ 129 (259)
+.+.
T Consensus 251 ~gWg 254 (877)
T KOG0151|consen 251 LGWG 254 (877)
T ss_pred eccc
Confidence 6443
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.76 E-value=2.7e-05 Score=67.23 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=67.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE---------EEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCC
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---------VLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMG 120 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~---------v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~ 120 (259)
.....+|||-+||..+++++|.++|.+|+++. |.|. + .++++||-|.|.|.++-.|+.|+. .++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34577999999999999999999999998764 2333 3 589999999999999999999998 6788888
Q ss_pred CeEEEEEecchH
Q 025001 121 RRYVEVFRSKRQ 132 (259)
Q Consensus 121 ~r~i~v~~~~~~ 132 (259)
+..|+|..+...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 899999776543
No 152
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.71 E-value=9.9e-05 Score=53.21 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=51.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeC-------CCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEE
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-------SDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 241 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~-------~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i 241 (259)
....|.|-|.|... ...|.+.|++||.+.....+..+ +.-.....-.|.|+++.+|.+||++||..|+|..+
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 34569999999884 46688999999976433322111 10112338999999999999999999999998655
Q ss_pred E-EEeCC
Q 025001 242 E-LFPSS 247 (259)
Q Consensus 242 ~-V~~~~ 247 (259)
- |.+++
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4 66653
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.68 E-value=0.00013 Score=53.29 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=39.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEecCCCCceeEEEEEeCCHHHHHHHHHhc------cccCCCeEEEEEe
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN------RQNMGRRYVEVFR 128 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~------~~~~~~r~i~v~~ 128 (259)
++.|+|.|++..++-++|++.|+.++.|. |-+. .|.. .|||.|.++++|++|+... +..+.+..+.+..
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~--~G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS--RGDT--EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE----TT-S--EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEec--CCCC--EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 36899999999999999999999997433 3322 2333 7999999999999999742 2246666666544
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
..
T Consensus 77 Le 78 (105)
T PF08777_consen 77 LE 78 (105)
T ss_dssp --
T ss_pred CC
Confidence 43
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.68 E-value=7e-05 Score=51.51 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=43.1
Q ss_pred CEEEEcCCCCCCCHHHHHH----HhcCCC--ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 57 PVVRLRGLPFDCTEVDVAE----FFHGLD--IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~----~F~~~~--iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
..|+|.|||.+.+-..|+. ++.-|| ++.| . .|.|+|.|.+++.|++|.+ +++..+-|+.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 4799999999999877554 555773 3333 1 2689999999999999998 6777788888888655
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.63 E-value=0.00029 Score=60.47 Aligned_cols=81 Identities=12% Similarity=0.347 Sum_probs=59.8
Q ss_pred CccEEEEcCCCCCCCHHH----H--HHHhccCCCccceEEEeeCC-C-CCCceE--EEEEEcCHHHHHHHHHh-CCCccC
Q 025001 169 HTGILRLRGLPFSAGKDD----I--MDFFKDFVLSEDSIHITMNS-D-GRPTGE--AFVEFANAEDSKAAMAK-DRMTLG 237 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~d----l--~~~F~~~g~~~~~v~i~~~~-~-g~~~G~--afV~F~~~~~A~~Al~~-~~~~l~ 237 (259)
..+-+||-+||+.+-.++ | .++|.+||.+. .|.+-+.. . +...+- .||.|.+.+||.+||.. +|..++
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~-KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIK-KIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhcccee-EEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 456789999998877766 2 28999999774 33332221 1 111222 49999999999999999 999999
Q ss_pred CeEEEEEeCCHHH
Q 025001 238 SRYIELFPSSHEE 250 (259)
Q Consensus 238 gr~i~V~~~~~~~ 250 (259)
||.|+..+.+.+=
T Consensus 192 Gr~lkatYGTTKY 204 (480)
T COG5175 192 GRVLKATYGTTKY 204 (480)
T ss_pred CceEeeecCchHH
Confidence 9999998877653
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.45 E-value=0.00025 Score=61.12 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCcc-ceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSE-DSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~-~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++||+||-|.+|++||.+.....|.-. ..+++.-+. +|.+||||.|...+....++.++. -.++|+|..=.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3467899999999999999999999888321 135555555 799999999999999999999988 8899999988887
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
...+.
T Consensus 158 ~~NK~ 162 (498)
T KOG4849|consen 158 SYNKT 162 (498)
T ss_pred ccchh
Confidence 76554
No 157
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.41 E-value=0.00016 Score=62.31 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=60.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCceE---EEE-ec-CCCCceeEEEEEeCCHHHHHHHHHh-ccccCCCeEEEEEe
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---VLF-VH-KNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFR 128 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~iv~---v~~-~~-~~g~~~G~afV~F~~~e~A~~Al~~-~~~~~~~r~i~v~~ 128 (259)
...++||+||-|.+|++||.+.....|+.. +.+ -+ .+|++||||.|...+....++-|+. ....|.|..-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 367899999999999999999988776554 433 34 5999999999999999999999984 45567777666655
Q ss_pred cch
Q 025001 129 SKR 131 (259)
Q Consensus 129 ~~~ 131 (259)
+.+
T Consensus 159 ~NK 161 (498)
T KOG4849|consen 159 YNK 161 (498)
T ss_pred cch
Confidence 543
No 158
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.35 E-value=0.00012 Score=63.05 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=60.5
Q ss_pred CCEEE-EcCCCCCCCHHHHHHHhcCCCc-eEEEEe--cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 56 FPVVR-LRGLPFDCTEVDVAEFFHGLDI-VDVLFV--HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 56 ~~~vf-V~nLp~~~te~~L~~~F~~~~i-v~v~~~--~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
..++| |+||++.+++++|+.+|..++. ..+.+. ..+|..+|+|||+|.+..++..|+......++++++.+...
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEED 261 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccC
Confidence 44555 9999999999999999999964 445554 35899999999999999999999977555788888887443
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.29 E-value=0.0009 Score=55.49 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=52.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~ 231 (259)
..|+|.||+..+..+.+..-|+.||.++..| +..|..+++.|-++|+|...-.|.+|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av-~~vD~r~k~t~eg~v~~~~k~~a~~a~rr 91 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAV-AKVDDRGKPTREGIVEFAKKPNARKAARR 91 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchhe-eeecccccccccchhhhhcchhHHHHHHH
Confidence 5699999999999999999999999987444 44466899999999999999999999865
No 160
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.28 E-value=0.0018 Score=44.55 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=44.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRN 115 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~ 115 (259)
|..+-..+|+ .|..+...||.++|+.||-+.|..++.+ .|||...+.+.|..|+...
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT-----SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT-----SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEECTT-----EEEEEECCCHHHHHHHHHH
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC-----cEEEEeecHHHHHHHHHHh
Confidence 3345577787 9999999999999999999999877765 7999999999999998753
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.16 E-value=0.00091 Score=42.44 Aligned_cols=52 Identities=15% Similarity=0.383 Sum_probs=39.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al 229 (259)
+.|-|.|.|.+.. ++|..+|..||.+. .+.+.. ..-..+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~-~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIV-DIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEE-EEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 4688999987766 45667999999875 455541 1228999999999999996
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0016 Score=59.65 Aligned_cols=84 Identities=15% Similarity=0.254 Sum_probs=63.1
Q ss_pred CCccEEEEcCCCCCCCH------HHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccC-Ce
Q 025001 168 VHTGILRLRGLPFSAGK------DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLG-SR 239 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te------~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~-gr 239 (259)
.-..+|+|-|+|---.. .-|.++|+++|.+. ...++.+..|.++||.|++|.+..+|+.|++. ||+.|+ +.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~v-n~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIV-NMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhcccc-ceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34568999999843221 23568999999764 78888888888999999999999999999988 998775 45
Q ss_pred EEEEEeCCHHHHHHH
Q 025001 240 YIELFPSSHEEMDEA 254 (259)
Q Consensus 240 ~i~V~~~~~~~~~~~ 254 (259)
.+.|.. -+++.+.
T Consensus 135 tf~v~~--f~d~eky 147 (698)
T KOG2314|consen 135 TFFVRL--FKDFEKY 147 (698)
T ss_pred eEEeeh--hhhHHHh
Confidence 566643 3444433
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.06 E-value=0.0036 Score=45.18 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=50.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEE-E-e---------cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeE
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVL-F-V---------HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRY 123 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~-~-~---------~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~ 123 (259)
.+.|.|=|.|.. ....|.+.|+.|| |++.. + . ...| ...-.|+|.++.+|.+||.+|+..++|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~--~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSG--GNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CC--TTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCC--CCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 567889999998 5677888999996 55543 1 0 1123 34899999999999999999999998876
Q ss_pred EE-EEec
Q 025001 124 VE-VFRS 129 (259)
Q Consensus 124 i~-v~~~ 129 (259)
|. |.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 65 4444
No 164
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.06 E-value=0.00064 Score=60.15 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=54.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeC---C---CCCC--------ceEEEEEEcCHHHHHHHHHhC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN---S---DGRP--------TGEAFVEFANAEDSKAAMAKD 232 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~---~---~g~~--------~G~afV~F~~~~~A~~Al~~~ 232 (259)
-+.++|.+-|||.+-.-+.|.++|+.+|.|. .|+|+.- + .|.+ +-+|+|+|...+.|.+|.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~Ik-sIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIK-SIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhccccee-eeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 5788999999999988899999999999886 8998754 2 3333 347999999999999999873
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.06 E-value=0.0021 Score=49.23 Aligned_cols=59 Identities=12% Similarity=0.278 Sum_probs=44.4
Q ss_pred HHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCCHHHHH
Q 025001 186 DIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMD 252 (259)
Q Consensus 186 dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~~~~~~ 252 (259)
+|.+.|..||.+. -|+++.+ .-+|+|.+-+.|.+|++++|..++|+.|.|++-++.-+.
T Consensus 52 ~ll~~~~~~Gevv-LvRfv~~-------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 52 ELLQKFAQYGEVV-LVRFVGD-------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWLK 110 (146)
T ss_dssp HHHHHHHCCS-EC-EEEEETT-------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-------
T ss_pred HHHHHHHhCCceE-EEEEeCC-------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHHH
Confidence 6778889999664 5666633 589999999999999999999999999999998876543
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.06 E-value=0.0004 Score=57.47 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=57.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-C--------CCCce----EEEEEEcCHHHHHHHHHh-CCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D--------GRPTG----EAFVEFANAEDSKAAMAK-DRM 234 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~--------g~~~G----~afV~F~~~~~A~~Al~~-~~~ 234 (259)
....||+++||+.....-|+++|+.||.|- .|.|.... + |.+++ .|+|+|.+...|.++... |+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVG-RvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVG-RVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccc-eEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 456899999999999999999999999884 67765433 2 22222 589999999999988877 999
Q ss_pred ccCCeE
Q 025001 235 TLGSRY 240 (259)
Q Consensus 235 ~l~gr~ 240 (259)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999975
No 167
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.93 E-value=0.0057 Score=39.90 Aligned_cols=52 Identities=21% Similarity=0.366 Sum_probs=43.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccC----CCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHH
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDF----VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~----g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~ 230 (259)
...|+|+|+. +.+.+||+.+|..| +. ..|..+.|.+ |=|.|.+.+.|.+||.
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~--~~IEWIdDtS------cNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP--FRIEWIDDTS------CNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC--ceEEEecCCc------EEEEECCHHHHHHHHH
Confidence 4579999995 68889999999998 44 3688887753 9999999999999985
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.87 E-value=0.00057 Score=56.65 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=53.6
Q ss_pred HHHHHHhc-cCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHHHH
Q 025001 185 DDIMDFFK-DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEA 254 (259)
Q Consensus 185 ~dl~~~F~-~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~~~ 254 (259)
+||...|+ +||.++ .+.+..+-.-.-.|-+||.|...++|++|++. |+..+.|++|...++.-.+...+
T Consensus 83 Ed~f~E~~~kygEie-e~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea 153 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIE-ELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREA 153 (260)
T ss_pred HHHHHHHHHHhhhhh-hhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhh
Confidence 44555555 889876 55555544445678999999999999999988 99999999999988876666544
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.86 E-value=0.0024 Score=40.50 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=38.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHH
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL 112 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al 112 (259)
+.|-|.|.|.+..+.- ..+|..|| |+++.+. ...-++||.|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVP----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcC----CCCcEEEEEECCHHHHHhhC
Confidence 4788999998877554 45888895 5565544 12238999999999999996
No 170
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0024 Score=57.88 Aligned_cols=62 Identities=21% Similarity=0.076 Sum_probs=52.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCC-CceE-EEEe-c-CCCCceeEEEEEeCCHHHHHHHHHh
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGL-DIVD-VLFV-H-KNNKFTGEAFCVLGYPLQVDFALQR 114 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~-~iv~-v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~ 114 (259)
.++.+||||++||.-++-++|..+|+.+ |.|. +-|. | +-+-++|-|=|+|.+....-+||..
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4568899999999999999999999966 6554 4343 4 5678999999999999999999974
No 171
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.67 E-value=0.0095 Score=38.88 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=43.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCC----CceEEEEecCCCCceeEEEEEeCCHHHHHHHHHh
Q 025001 58 VVRLRGLPFDCTEVDVAEFFHGL----DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114 (259)
Q Consensus 58 ~vfV~nLp~~~te~~L~~~F~~~----~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~ 114 (259)
.|+|+|+ -+++.+||+.+|..+ ++..|..++.+ .|=|.|.+.+.|.+||..
T Consensus 7 avhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 7 AVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALVA 61 (62)
T ss_pred eEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHHc
Confidence 8999998 568889999999988 67778777654 588999999999999963
No 172
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.53 E-value=0.0074 Score=52.06 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=56.1
Q ss_pred CCEEEEcCCCCCCCHHHH------HHHhcCCC-ceEEEEecCC---CCceeEE--EEEeCCHHHHHHHHH-hccccCCCe
Q 025001 56 FPVVRLRGLPFDCTEVDV------AEFFHGLD-IVDVLFVHKN---NKFTGEA--FCVLGYPLQVDFALQ-RNRQNMGRR 122 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L------~~~F~~~~-iv~v~~~~~~---g~~~G~a--fV~F~~~e~A~~Al~-~~~~~~~~r 122 (259)
..-|||-+||..+-.+++ .++|.+|| |..|++-.++ ....+.+ ||+|.+.|||.+||. -++..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 558999999988877773 35899996 4455543332 2223444 999999999999997 688899999
Q ss_pred EEEEEecch
Q 025001 123 YVEVFRSKR 131 (259)
Q Consensus 123 ~i~v~~~~~ 131 (259)
.|+....+.
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 998765543
No 173
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.46 E-value=0.0096 Score=41.06 Aligned_cols=53 Identities=23% Similarity=0.368 Sum_probs=41.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~ 231 (259)
....+|. .|.++-..||.++|++||.+ .|..+.|. -|||...+.+.|..|+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I--~VsWi~dT------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI--YVSWINDT------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE--EEEEECTT------EEEEEECCCHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE--EEEEEcCC------cEEEEeecHHHHHHHHHH
Confidence 4456666 99999999999999999987 47787653 499999999999998876
No 174
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.46 E-value=0.0055 Score=53.81 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=60.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCC----CCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEe
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD----GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~----g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~ 245 (259)
...|.|.||.+++|.++++.||..+|.+. .+.|..... ....-.|||.|.+...+..|-.+.++.+=++-|.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~-elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIP-ELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccc-cccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 34899999999999999999999999876 566654221 2334589999999999999988866777778777766
Q ss_pred C
Q 025001 246 S 246 (259)
Q Consensus 246 ~ 246 (259)
.
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 5
No 175
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.05 E-value=0.0069 Score=50.34 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=58.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCCceE--EEEecCCCCceeEEEEEeCCHHHHHHHHHhc--cc---cCCCeEEEE
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQRN--RQ---NMGRRYVEV 126 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~iv~--v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~--~~---~~~~r~i~v 126 (259)
..|+|.||+.-++-+.|..-|+.|+.++ |+++|..++..|-++|+|...-.|.+|+.+- +. ...+++.-|
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence 5899999999999999999999998776 6677888999999999999999999999743 33 234555555
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.025 Score=52.11 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=55.3
Q ss_pred CCCCCEEEEcCCCCCC--CHHH----HHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccC-CCe
Q 025001 53 PPPFPVVRLRGLPFDC--TEVD----VAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNM-GRR 122 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~--te~~----L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~-~~r 122 (259)
+.-+..|+|-|+|--- .-+- |.++|+.+| ++...+. +..|..+||.|++|++..+|+.|++ .+|..| .++
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3457799999999432 2233 456788885 5555443 6777799999999999999999998 677755 455
Q ss_pred EEEEEec
Q 025001 123 YVEVFRS 129 (259)
Q Consensus 123 ~i~v~~~ 129 (259)
...|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 5555443
No 177
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.88 E-value=0.013 Score=52.04 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=51.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEecC-------CCC--------ceeEEEEEeCCHHHHHHHHHhccc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHK-------NNK--------FTGEAFCVLGYPLQVDFALQRNRQ 117 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~~~-------~g~--------~~G~afV~F~~~e~A~~Al~~~~~ 117 (259)
-+.++|.+-|||.+-.-+.|.++|..||.+. |+|.++ .|. .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 3588999999999999999999999997655 666543 121 256899999999999999987543
No 178
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=0.035 Score=47.28 Aligned_cols=80 Identities=11% Similarity=0.206 Sum_probs=61.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCe-EEEEEeCCH
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSR-YIELFPSSH 248 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr-~i~V~~~~~ 248 (259)
..-|-|-++|+..+ .-|..+|+.||.|. ..+.-.+| -+-+|.|.+.-+|.+||.+||+.|+|- .|-|+++..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vv---khv~~~ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVV---KHVTPSNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeee---eeecCCCC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 45588889988766 45778899999774 33322333 389999999999999999999999875 577898887
Q ss_pred HHHHHHHH
Q 025001 249 EEMDEALS 256 (259)
Q Consensus 249 ~~~~~~~~ 256 (259)
+.+++..+
T Consensus 270 ksvi~~sn 277 (350)
T KOG4285|consen 270 KSVINGSN 277 (350)
T ss_pred HHHhcccc
Confidence 77766544
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.70 E-value=0.042 Score=42.19 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=48.2
Q ss_pred CCEEEEcCCCCC-----CCH----HHHHHHhcCCCc-eEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEE
Q 025001 56 FPVVRLRGLPFD-----CTE----VDVAEFFHGLDI-VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVE 125 (259)
Q Consensus 56 ~~~vfV~nLp~~-----~te----~~L~~~F~~~~i-v~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~ 125 (259)
+.||.|.=+..+ .-. .+|.+.|..||. +-++++. +.-+|+|.+-+.|.+|+.+++..++|+.|.
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~------~~mwVTF~dg~sALaals~dg~~v~g~~l~ 100 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG------DTMWVTFRDGQSALAALSLDGIQVNGRTLK 100 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET------TCEEEEESSCHHHHHHHHGCCSEETTEEEE
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC------CeEEEEECccHHHHHHHccCCcEECCEEEE
Confidence 457777666511 222 267778888873 3344443 368999999999999999999999999999
Q ss_pred EEecchHHHHHHHhhh
Q 025001 126 VFRSKRQEYYKAIANE 141 (259)
Q Consensus 126 v~~~~~~~~~~~~~~~ 141 (259)
|...+ .+|......+
T Consensus 101 i~LKt-pdW~~~l~~E 115 (146)
T PF08952_consen 101 IRLKT-PDWLKGLEEE 115 (146)
T ss_dssp EEE-------------
T ss_pred EEeCC-ccHHHHHHHH
Confidence 97655 3555544444
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.39 E-value=0.063 Score=45.66 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=53.9
Q ss_pred EEEEcCC--CCCCCH---HHHHHHhccCCCccceEEEeeCCCC--CCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEE
Q 025001 172 ILRLRGL--PFSAGK---DDIMDFFKDFVLSEDSIHITMNSDG--RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 243 (259)
Q Consensus 172 ~i~V~nL--p~~~te---~dl~~~F~~~g~~~~~v~i~~~~~g--~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V 243 (259)
.|.++|+ +-.+++ +++++-+++||.+. .|.|...+.- .-----||+|...++|.+|+-. ||.+|+||.+..
T Consensus 283 vlllrnmVg~gevd~elede~keEceKyg~V~-~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 283 VLLLRNMVGAGEVDEELEDETKEECEKYGKVG-NVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHhhhhcCcccccHHHHHHHHHHHHhhccee-eEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 3555555 233333 56788899999875 5555544421 0112379999999999999966 999999999887
Q ss_pred EeCCHHHH
Q 025001 244 FPSSHEEM 251 (259)
Q Consensus 244 ~~~~~~~~ 251 (259)
-......+
T Consensus 362 ~Fyn~ekf 369 (378)
T KOG1996|consen 362 CFYNLEKF 369 (378)
T ss_pred eeccHHhh
Confidence 66555443
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.30 E-value=0.039 Score=51.10 Aligned_cols=84 Identities=11% Similarity=0.139 Sum_probs=65.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcc-CCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCcc---CCeE
Q 025001 166 SAVHTGILRLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL---GSRY 240 (259)
Q Consensus 166 ~~~~~~~i~V~nLp~~~te~dl~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l---~gr~ 240 (259)
....++.|||.||=--.|.-+|++++.. .|+|+. . .+|+ -+--|||.|.+.++|...... ||..- +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee-~--WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEE-F--WMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHH-H--HHHH---hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456789999999888999999999994 556652 2 3332 122599999999999998876 87644 6799
Q ss_pred EEEEeCCHHHHHHHH
Q 025001 241 IELFPSSHEEMDEAL 255 (259)
Q Consensus 241 i~V~~~~~~~~~~~~ 255 (259)
|.+-+.+..+|.++.
T Consensus 514 L~adf~~~deld~hr 528 (718)
T KOG2416|consen 514 LIADFVRADELDKHR 528 (718)
T ss_pred eEeeecchhHHHHHh
Confidence 999999999998664
No 182
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.14 E-value=0.013 Score=48.81 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=52.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEe--cCC--------CCce----eEEEEEeCCHHHHHHHHH-hccccC
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFV--HKN--------NKFT----GEAFCVLGYPLQVDFALQ-RNRQNM 119 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~--~~~--------g~~~----G~afV~F~~~e~A~~Al~-~~~~~~ 119 (259)
...||+++||+.+.-.-|+++|+.||.|. |.+- +.. |.++ --|+|+|.+...|..... +|+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 46999999999999999999999998776 4442 112 2322 247899999999998665 788888
Q ss_pred CCeE
Q 025001 120 GRRY 123 (259)
Q Consensus 120 ~~r~ 123 (259)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8875
No 183
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.91 E-value=0.054 Score=48.27 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=57.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CC-CccCCeEEEEEeCCHH
Q 025001 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DR-MTLGSRYIELFPSSHE 249 (259)
Q Consensus 172 ~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~-~~l~gr~i~V~~~~~~ 249 (259)
.+|++||.+.++..||..+|...-+.- +-.++. ..||+||...+..-|.+|++. ++ ..+.|..++|-.+-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~-~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPG-SGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCC-Ccceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 589999999999999999998753221 112221 247999999999999999987 54 5889999999777655
Q ss_pred HHH
Q 025001 250 EMD 252 (259)
Q Consensus 250 ~~~ 252 (259)
...
T Consensus 77 kqr 79 (584)
T KOG2193|consen 77 KQR 79 (584)
T ss_pred HHH
Confidence 533
No 184
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.42 E-value=0.27 Score=32.58 Aligned_cols=54 Identities=9% Similarity=0.275 Sum_probs=44.1
Q ss_pred CCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEE
Q 025001 181 SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIEL 243 (259)
Q Consensus 181 ~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V 243 (259)
.++-+|++.-+..|+-. +|..+++| =||.|.+..+|++|... |++.+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~----~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD----RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc----eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999754 55667776 69999999999999988 988887766543
No 185
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.31 E-value=0.087 Score=48.52 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=50.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcC--C-CceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhcc---ccCCCeEEE
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHG--L-DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR---QNMGRRYVE 125 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~--~-~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~---~~~~~r~i~ 125 (259)
.-|.|.++-||.++-+++++.+|+. | .+++|.+-..+ -=||+|++..||+.|.+... +.|.|++|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3789999999999999999999986 4 56667654322 26999999999999986432 345666654
No 186
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.06 E-value=0.89 Score=33.40 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=49.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCC
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS 238 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~g 238 (259)
...+.+-..|+.++-++|..+.+.+-.....++|+++... ++=.+.+.|.+.++|..=... ||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455556666667777777666666533346788877542 555899999999999998888 9998864
No 187
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.53 E-value=0.22 Score=42.41 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCC-ceEEEEe-cCC--CCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchHHH
Q 025001 70 EVDVAEFFHGLD-IVDVLFV-HKN--NKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEY 134 (259)
Q Consensus 70 e~~L~~~F~~~~-iv~v~~~-~~~--g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~~~ 134 (259)
|+++++=.++|| +..|+|. .++ -.-.=--||+|...++|.+|+- +|+.+++||.+.-...+..++
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekf 369 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKF 369 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhh
Confidence 356677777885 4555543 221 1111247999999999999995 788999999987655444443
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.13 E-value=0.13 Score=41.25 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=41.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcc-CCCc--cceEEEeeCC--CC-CCceEEEEEEcCHHHHHHHHHh-CCCcc
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKD-FVLS--EDSIHITMNS--DG-RPTGEAFVEFANAEDSKAAMAK-DRMTL 236 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~-~g~~--~~~v~i~~~~--~g-~~~G~afV~F~~~~~A~~Al~~-~~~~l 236 (259)
...+|.||+||++.|++++.+.+++ ++.. ...+.-.... .. ..-.-|||.|.+.+++..-... +|+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 4558999999999999999997776 4432 1133311222 11 1233699999999998887777 88655
No 189
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.08 E-value=0.27 Score=42.05 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=57.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeE-EEEEecchHH
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRY-VEVFRSKRQE 133 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~-i~v~~~~~~~ 133 (259)
+.-|-|-|+|..... -|...|+.|| |++.+.- .+| .+-+|.|.+.-+|++||.+++..|++.. |-|.+|+.+.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~-~ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP-SNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC-CCC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHH
Confidence 556777799887765 4556788995 5554433 333 4899999999999999999999987665 5688888776
Q ss_pred HHHH
Q 025001 134 YYKA 137 (259)
Q Consensus 134 ~~~~ 137 (259)
....
T Consensus 272 vi~~ 275 (350)
T KOG4285|consen 272 VING 275 (350)
T ss_pred Hhcc
Confidence 6543
No 190
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.96 E-value=0.094 Score=36.80 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=46.1
Q ss_pred EEEEeCCHHHHHHHHHhccc--cCCCeEEEEEecchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEE
Q 025001 98 AFCVLGYPLQVDFALQRNRQ--NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRL 175 (259)
Q Consensus 98 afV~F~~~e~A~~Al~~~~~--~~~~r~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V 175 (259)
|.|+|..+.=|+.-+++... .+++..+.|....-.... .... .-....+.++|-|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~---------------------~~k~--qv~~~vs~rtVlv 57 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGH---------------------LQKF--QVFSGVSKRTVLV 57 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCC---------------------ceEE--EEEEcccCCEEEE
Confidence 78999999999999976444 467777666332110000 0000 0011246788999
Q ss_pred cCCCCCCCHHHHHHHh
Q 025001 176 RGLPFSAGKDDIMDFF 191 (259)
Q Consensus 176 ~nLp~~~te~dl~~~F 191 (259)
+|||...++++|++..
T Consensus 58 sgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 58 SGIPDVLDEEELRDKL 73 (88)
T ss_pred eCCCCCCChhhheeeE
Confidence 9999999999998864
No 191
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.58 E-value=0.073 Score=44.43 Aligned_cols=62 Identities=13% Similarity=0.184 Sum_probs=44.4
Q ss_pred CCCce-EEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchHHHHHHHhh
Q 025001 79 GLDIV-DVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEYYKAIAN 140 (259)
Q Consensus 79 ~~~iv-~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~~~~~~~~~ 140 (259)
+++.+ ++.+- +..-+-.|-+||.|...++|++|++ .++-.+.|++|....+....|..++..
T Consensus 92 kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea~C~ 156 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREAICG 156 (260)
T ss_pred HhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhhhhc
Confidence 55433 34333 3344678999999999999999998 678899999998876665555544443
No 192
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.40 E-value=0.032 Score=53.95 Aligned_cols=78 Identities=18% Similarity=0.100 Sum_probs=60.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...+.+||++||+..+++.+|+-.|..+|.++ .|.|..-.-+.-.-||||.|.+...+-.|... .+..|+.-.+.+.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve-~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVE-EVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhcccc-ccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34678999999999999999999999999876 77776554333344999999999999888865 66666554444433
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.76 E-value=0.054 Score=46.92 Aligned_cols=78 Identities=13% Similarity=0.364 Sum_probs=56.1
Q ss_pred ccEEEEcCCCCCCCHHHHH---HHhccCCCccceEEEeeCCC--CCCce--EEEEEEcCHHHHHHHHHh-CCCccCCeEE
Q 025001 170 TGILRLRGLPFSAGKDDIM---DFFKDFVLSEDSIHITMNSD--GRPTG--EAFVEFANAEDSKAAMAK-DRMTLGSRYI 241 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~---~~F~~~g~~~~~v~i~~~~~--g~~~G--~afV~F~~~~~A~~Al~~-~~~~l~gr~i 241 (259)
.+-+||-+|+.....+++. ++|..||.+. .|.+-.+.. ..+-| -++|+|...++|..||.. +|..++||.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~-ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKIN-KIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccce-EEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 3557888888776555544 7888888774 566655441 11111 289999999999999999 9999999987
Q ss_pred EEEeCCH
Q 025001 242 ELFPSSH 248 (259)
Q Consensus 242 ~V~~~~~ 248 (259)
+..+.+.
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 7665544
No 194
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.67 E-value=0.33 Score=45.26 Aligned_cols=77 Identities=9% Similarity=0.009 Sum_probs=56.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhc-CCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hcccc---CCCeEEEEEecc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFH-GLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQN---MGRRYVEVFRSK 130 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~-~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~---~~~r~i~v~~~~ 130 (259)
...|+|.||-.-.|.-+|+.++. .+++|.-.+||+- +-.|||.|.+.++|-.-.. ++|-. -+.+.+.+....
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI---KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI---KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHHHHh---hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 66999999999999999999998 5566653355532 2379999999999988776 45543 356777776665
Q ss_pred hHHHH
Q 025001 131 RQEYY 135 (259)
Q Consensus 131 ~~~~~ 135 (259)
..++.
T Consensus 521 ~deld 525 (718)
T KOG2416|consen 521 ADELD 525 (718)
T ss_pred hhHHH
Confidence 55543
No 195
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.12 E-value=3.8 Score=30.08 Aligned_cols=65 Identities=8% Similarity=-0.029 Sum_probs=43.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCC-CceE-EEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCC
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGL-DIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMG 120 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~-~iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~ 120 (259)
...+-+-..|+-++-++|..|.+.+ ..++ ++|++....++=.+.+.|.+.++|..-.. .||+.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3355555666777777887777777 4444 55554333355568999999999999886 6776554
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.01 E-value=0.51 Score=43.69 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=51.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCc-cceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh---CCCccCCeEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLS-EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK---DRMTLGSRYIEL 243 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~-~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~---~~~~l~gr~i~V 243 (259)
...+.|.|+-||.++-.++|+.||+.-... ..++.+..+. -=||+|++..||+.|.+. .-++|.|++|..
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 345667789999999999999999873311 1134444332 269999999999988753 557888888865
Q ss_pred Ee
Q 025001 244 FP 245 (259)
Q Consensus 244 ~~ 245 (259)
.+
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 44
No 197
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.80 E-value=0.89 Score=34.81 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=48.9
Q ss_pred CCccEEEEcCCCCC----CCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEE
Q 025001 168 VHTGILRLRGLPFS----AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 243 (259)
Q Consensus 168 ~~~~~i~V~nLp~~----~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V 243 (259)
.+-.+|.|+=|..+ -+-..|...++.||.+. +|.+. |+. -|.|.|.+..+|-+|+..-.....|+.+..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~-SVT~c----Grq--savVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQ-SVTLC----GRQ--SAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcc-eeeec----CCc--eEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 34557888655444 33344556678899886 78776 322 599999999999999988444666776665
Q ss_pred Ee
Q 025001 244 FP 245 (259)
Q Consensus 244 ~~ 245 (259)
..
T Consensus 157 sW 158 (166)
T PF15023_consen 157 SW 158 (166)
T ss_pred ec
Confidence 43
No 198
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.79 E-value=0.12 Score=46.67 Aligned_cols=73 Identities=27% Similarity=0.370 Sum_probs=56.2
Q ss_pred ccEEEEcCCCCC-CCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCCH
Q 025001 170 TGILRLRGLPFS-AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248 (259)
Q Consensus 170 ~~~i~V~nLp~~-~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~~ 248 (259)
.+.|-+.-.|+. -|..+|...|.+||.++ .|.+-.... -|.|+|.+..+|-+|-.-++..|++|.|.|++..+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~-n~qv~~~~~-----~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIE-NIQVDYSSL-----HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccc-cccccCchh-----hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 344555556665 45688999999999875 455543311 49999999999999887799999999999988765
No 199
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.71 E-value=0.38 Score=45.35 Aligned_cols=71 Identities=6% Similarity=-0.009 Sum_probs=58.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 166 ~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
+..+..++||+|+.+.+..+-++.+...+|.+.. ..... |||++|..+.-+.+|+.. +-..++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s-~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPS-WKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchh-hhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 3456789999999999999999999999998762 22221 999999999999999988 8888888887775
Q ss_pred e
Q 025001 245 P 245 (259)
Q Consensus 245 ~ 245 (259)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.29 E-value=3.2 Score=31.82 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=48.6
Q ss_pred CCCCCEEEEcCCCCCCC-HHHHHH---HhcCCCceE-EEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEE
Q 025001 53 PPPFPVVRLRGLPFDCT-EVDVAE---FFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~t-e~~L~~---~F~~~~iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~ 127 (259)
..+-.||.|+-|...+. .+||+. ..+.||++. |.+. |+. .|.|.|.+..+|.+|+..-+...-|..+.+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---Grq--savVvF~d~~SAC~Av~Af~s~~pgtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQ--SAVVVFKDITSACKAVSAFQSRAPGTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCc--eEEEEehhhHHHHHHHHhhcCCCCCceEEee
Confidence 34567999988876653 344555 455677665 4443 332 6999999999999999877766667766663
No 201
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.75 E-value=2.5 Score=28.46 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHhccC-CCccc---eEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 179 PFSAGKDDIMDFFKDF-VLSED---SIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 179 p~~~te~dl~~~F~~~-g~~~~---~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
-..++..+|..++... |+... .|.+..+ |+||+-... .|..+++. ++..+.|+.|.|.++
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3567889999999776 43322 3555533 899998776 66777776 999999999999865
No 202
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.38 E-value=0.71 Score=36.93 Aligned_cols=64 Identities=19% Similarity=0.031 Sum_probs=38.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcC-CCce----EEE-Ee-cC-CC-CceeEEEEEeCCHHHHHHHHHh-ccc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHG-LDIV----DVL-FV-HK-NN-KFTGEAFCVLGYPLQVDFALQR-NRQ 117 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~-~~iv----~v~-~~-~~-~g-~~~G~afV~F~~~e~A~~Al~~-~~~ 117 (259)
.....|-||+||+++||+++.+.++. ++-. .+. .. +. .. ....-|||.|.+.+++..-... ++.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~ 78 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGH 78 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Confidence 34669999999999999999997776 3322 122 12 11 11 2235699999999998877763 444
No 203
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.89 E-value=0.52 Score=44.51 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=51.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHHh-ccccCCCeEEEE
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEV 126 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~-~~~~~~~r~i~v 126 (259)
+..+|||+||...+.++-++.+...||.|-...... |+|..|........|+.. ....+++..+.+
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 356999999999999999999999998776442222 999999999999999974 344566665544
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.37 E-value=2.8 Score=38.08 Aligned_cols=68 Identities=15% Similarity=0.272 Sum_probs=57.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCC
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS 238 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~g 238 (259)
+..|+|-.+|...|-.||..|...+-.....+++++|... .+=...|.|.+.++|..--+. ||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7789999999999999999999988644458999986532 344799999999999999888 9988864
No 205
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.90 E-value=4.5 Score=26.74 Aligned_cols=50 Identities=6% Similarity=0.018 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCC
Q 025001 66 FDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGR 121 (259)
Q Consensus 66 ~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~ 121 (259)
..++-+|++..+..+.-.+|+ .+++| =||.|.+..+|+++.. .++..+..
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~I~-~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDRIR-DDRTG-----FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CCccHHHHHHHHhcCCcceEE-ecCCE-----EEEEECChHHHHHHHHhcCCCEEEE
Confidence 356778999999999888777 45553 4899999999999997 45554433
No 206
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=85.19 E-value=0.78 Score=34.02 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=33.6
Q ss_pred EEEEcCCCCCC---------CHHHHHHHhcCCCceEEEE-ecCCCCceeEEEEEeCCHHH-HHHHHHhcc
Q 025001 58 VVRLRGLPFDC---------TEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQ-VDFALQRNR 116 (259)
Q Consensus 58 ~vfV~nLp~~~---------te~~L~~~F~~~~iv~v~~-~~~~g~~~G~afV~F~~~e~-A~~Al~~~~ 116 (259)
++.|-|+|.+. +-++|++.|+.|...++.. .++. .++|++.|+|.+.-. -..|+...+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETT-EEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCC-CCcEEEEEEECCChHHHHHHHHHHH
Confidence 67788887654 4578999999998777764 4555 456999999987544 555665533
No 207
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.06 E-value=3.3 Score=33.39 Aligned_cols=61 Identities=8% Similarity=0.138 Sum_probs=40.9
Q ss_pred CHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-C--CCccCCeEEEEEeCCHH
Q 025001 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-D--RMTLGSRYIELFPSSHE 249 (259)
Q Consensus 183 te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~--~~~l~gr~i~V~~~~~~ 249 (259)
..+.|+++|..++... ....+. +-+-..|.|.+.++|.+|... + +..+.|..++|..+...
T Consensus 8 ~~~~l~~l~~~~~~~~-~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPV-QFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS--EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCce-EEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3478999999998654 233331 223599999999999999988 8 89999999999877443
No 208
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=84.82 E-value=0.93 Score=33.62 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=29.0
Q ss_pred ccEEEEcCCCCCC---------CHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCH
Q 025001 170 TGILRLRGLPFSA---------GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANA 222 (259)
Q Consensus 170 ~~~i~V~nLp~~~---------te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~ 222 (259)
+.++.|-|+|... +.+.|++.|+.|.... |+.+.++. -++|++.|+|.+.
T Consensus 8 PwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k--v~~l~~~~-gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 8 PWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK--VKPLYGKQ-GHTGFAIVEFNKD 66 (116)
T ss_dssp S-EEEEE----EE-TTS-EE---SHHHHHHHHH---SE--EEEEEETT-EEEEEEEEE--SS
T ss_pred CCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce--eEECcCCC-CCcEEEEEEECCC
Confidence 3467778886543 4578999999998764 66666655 4789999999963
No 209
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=79.68 E-value=0.97 Score=41.11 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=58.1
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDC-TEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~-te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
+.|.+-+.-.|+.. |-.+|...|.+|| |..|.+... .-.|.|+|.+..+|-.|-...+..|++|.|+|++..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhccccceecCceeEEEEec
Confidence 47778888888776 5578999999996 455665433 236999999999998888888999999999998765
No 210
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.99 E-value=4.7 Score=36.10 Aligned_cols=57 Identities=14% Similarity=0.255 Sum_probs=48.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~ 231 (259)
-...|-|.|+|...-.+||...|+.|+..--.|.++.|. -||-.|.+...|..||-+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc
Confidence 457899999999999999999999998654457777553 499999999999999876
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.18 E-value=13 Score=33.99 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=52.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCC--CceEEEEecCCCCc-eeEEEEEeCCHHHHHHHHH-hccccCC
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGL--DIVDVLFVHKNNKF-TGEAFCVLGYPLQVDFALQ-RNRQNMG 120 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~--~iv~v~~~~~~g~~-~G~afV~F~~~e~A~~Al~-~~~~~~~ 120 (259)
.+++.|.|=.+|..+|-.||..|...+ .|.++.+++ +|.+ +=.+.|.|.+.++|..--+ .||..+.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-DGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-cCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 337899999999999999999999987 466777665 3333 3358999999999999886 6777654
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=71.88 E-value=2.4 Score=41.42 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=58.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCcc--CCeEEEEEeCCH
Q 025001 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL--GSRYIELFPSSH 248 (259)
Q Consensus 172 ~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l--~gr~i~V~~~~~ 248 (259)
+..+.|.+-..+..-|--+|++||.+. +...+++-+ .|.|+|.+.+.|..|+.. +|+.+ -|-+.+|..++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~-s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVA-SAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchh-hheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 455566677788888999999999886 566665543 699999999999999977 88755 577888888877
Q ss_pred HHH
Q 025001 249 EEM 251 (259)
Q Consensus 249 ~~~ 251 (259)
.+|
T Consensus 374 ~~~ 376 (1007)
T KOG4574|consen 374 LPM 376 (1007)
T ss_pred ccc
Confidence 655
No 213
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=71.67 E-value=1.8 Score=37.71 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=47.1
Q ss_pred CCEEEEcCCCCCCCHHHHHH---HhcCCC-ceEEEEec-CC--CC--ceeEEEEEeCCHHHHHHHHH-hccccCCCeEEE
Q 025001 56 FPVVRLRGLPFDCTEVDVAE---FFHGLD-IVDVLFVH-KN--NK--FTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVE 125 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~---~F~~~~-iv~v~~~~-~~--g~--~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~ 125 (259)
...+||-+|+.....+++.+ +|..|+ +..|.+.. .. .. ..--++|+|...++|..||. -++..+.++.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 45789999987776655544 888885 44554332 21 11 11238999999999999997 466666777654
Q ss_pred E
Q 025001 126 V 126 (259)
Q Consensus 126 v 126 (259)
.
T Consensus 157 a 157 (327)
T KOG2068|consen 157 A 157 (327)
T ss_pred H
Confidence 4
No 214
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.01 E-value=8.5 Score=34.52 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=46.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCc--eEEEEecCCCCceeEEEEEeCCHHHHHHHHHh
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDI--VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~i--v~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~ 114 (259)
...|-|-|+|.....+||...|+.|+- -+|.+++.+ .||-.|.+...|..||.+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 447889999999999999999999844 457777765 799999999999999976
No 215
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=69.14 E-value=15 Score=31.49 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=37.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHH
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAE 223 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~ 223 (259)
..-|+|.|||.++--.||+..+.+.+-+.-++.+. | +.|-||++|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----G-HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee----c-CCcceeEecCCcc
Confidence 34599999999999999999998877554344433 2 4677999998753
No 216
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=66.21 E-value=2.9 Score=32.05 Aligned_cols=100 Identities=8% Similarity=-0.001 Sum_probs=63.7
Q ss_pred CCCHHHHHHHhcCC-Cc---eEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecchHHHHHHHhhhc
Q 025001 67 DCTEVDVAEFFHGL-DI---VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEV 142 (259)
Q Consensus 67 ~~te~~L~~~F~~~-~i---v~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~~~~~~~~~~~~ 142 (259)
..+-..|...+... +. +.+.-.. .|+..+.|.+.+++.+++......+++..+.+..-++...
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~-------- 94 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFN-------- 94 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEecccccccccchhhhhhccccc--------
Confidence 45666676666543 33 3333222 3699999999999999998766677777777644331100
Q ss_pred cccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCC-CCHHHHHHHhccCCCc
Q 025001 143 SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFS-AGKDDIMDFFKDFVLS 197 (259)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~-~te~dl~~~F~~~g~~ 197 (259)
..........-=|.|.|||.. .+++-|+.+-+.+|.+
T Consensus 95 ------------------~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~ 132 (153)
T PF14111_consen 95 ------------------PSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEP 132 (153)
T ss_pred ------------------ccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCe
Confidence 000000112233778999988 7888889999999865
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=63.61 E-value=21 Score=30.47 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=54.1
Q ss_pred EEEEEeCCHHHHHHHHHhccccCCCeEEEEEecchHHHHHHHhhhccccCCCCCCCCCCc-----cCCCCCCCCCCCCcc
Q 025001 97 EAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPR-----AKSHDEGKDSAVHTG 171 (259)
Q Consensus 97 ~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 171 (259)
.-||.|+-.-.-.-.++..-..++|..|.+.--. +..+...++.. -.-|.++... .+.. ....+...+.
T Consensus 77 id~iifeael~n~gimkk~l~~ldgfsiklsgfa--d~lkvka~eak---idfpsrhdwdd~fm~~kdm-demkpgerpd 150 (445)
T KOG2891|consen 77 IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFA--DILKVKAAEAK---IDFPSRHDWDDFFMDAKDM-DEMKPGERPD 150 (445)
T ss_pred cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccc--hHHhhhHHhhc---CCCCcccchHHHHhhhhhh-hccCCCCCCC
Confidence 6789998766655555555556777777774332 11122111110 0001111110 0111 1112334566
Q ss_pred EEEEcCCCCC------------CCHHHHHHHhccCCCccceEEEee
Q 025001 172 ILRLRGLPFS------------AGKDDIMDFFKDFVLSEDSIHITM 205 (259)
Q Consensus 172 ~i~V~nLp~~------------~te~dl~~~F~~~g~~~~~v~i~~ 205 (259)
+|++-+||-. .+++-|+..|..||.+. .|.|+.
T Consensus 151 ti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir-~vdipi 195 (445)
T KOG2891|consen 151 TIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIR-NVDIPI 195 (445)
T ss_pred ceeecCCcceeeeecccccccCChHHHHHHHHHHhccce-ecCCcc
Confidence 8888888832 45678999999999775 566653
No 218
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=62.40 E-value=21 Score=28.70 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHh-c--cccCCCeEEEEEecc
Q 025001 70 EVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR-N--RQNMGRRYVEVFRSK 130 (259)
Q Consensus 70 e~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~-~--~~~~~~r~i~v~~~~ 130 (259)
.+.|+++|..++ ++.......- +-..|.|.+.++|.+|... + +..+.|..+.++...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred HHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 478999999984 5665544332 3589999999999999974 4 567888889987663
No 219
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=61.35 E-value=9.1 Score=26.86 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.7
Q ss_pred EEEEEcCHHHHHHHHHh--CCCccCCeEEEEEeC
Q 025001 215 AFVEFANAEDSKAAMAK--DRMTLGSRYIELFPS 246 (259)
Q Consensus 215 afV~F~~~~~A~~Al~~--~~~~l~gr~i~V~~~ 246 (259)
|.|+|.++.-|++.+++ +.-.+++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 68999999999999986 677888888777544
No 220
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=59.38 E-value=29 Score=24.11 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=40.4
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHH
Q 025001 173 LRLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA 230 (259)
Q Consensus 173 i~V~nLp~~~te~dl~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~ 230 (259)
-|+--.+..++..+|++.++. ||.....|.....+.+.. -|||.+...++|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~K--KA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEK--KAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcE--EEEEEeCCCCcHHHHHH
Confidence 334445789999999999988 675545677766554433 49999999888876543
No 221
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=56.75 E-value=37 Score=23.15 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=39.4
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 025001 173 LRLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229 (259)
Q Consensus 173 i~V~nLp~~~te~dl~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al 229 (259)
-|+-.++..++..+|++.++. |+.....|....-+.+.. -|||.+..-+.|...-
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~K--KA~VtL~~g~~a~~va 71 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEK--KAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCce--EEEEEECCCCcHHHHH
Confidence 455567889999999999987 675444666665554433 4999998887776543
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=56.47 E-value=23 Score=30.43 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=35.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCce--EEEEecCCCCceeEEEEEeCCHH
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIV--DVLFVHKNNKFTGEAFCVLGYPL 106 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv--~v~~~~~~g~~~G~afV~F~~~e 106 (259)
..-|+|+|||.++.-.||+.-+.+.+-+ .+... | +.|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk---g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK---G-HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee---c-CCcceeEecCCcc
Confidence 5569999999999999999988865433 33333 2 3467999998754
No 223
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=56.11 E-value=24 Score=26.11 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHhcc-CCCccceEEEee--CC--CCCCceEEEEEEcCHHHHHH
Q 025001 180 FSAGKDDIMDFFKD-FVLSEDSIHITM--NS--DGRPTGEAFVEFANAEDSKA 227 (259)
Q Consensus 180 ~~~te~dl~~~F~~-~g~~~~~v~i~~--~~--~g~~~G~afV~F~~~~~A~~ 227 (259)
.++..+||++-.+. |-...+.|.+.. .. .|++.|||.| |++.+.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 46788888877765 333333343332 22 5799999976 677776664
No 224
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.34 E-value=43 Score=31.71 Aligned_cols=72 Identities=22% Similarity=0.225 Sum_probs=52.8
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHHhccC---C-CccceEEEeeCCC-----------CC--------------------
Q 025001 167 AVHTGILRLRGLPFS-AGKDDIMDFFKDF---V-LSEDSIHITMNSD-----------GR-------------------- 210 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~-~te~dl~~~F~~~---g-~~~~~v~i~~~~~-----------g~-------------------- 210 (259)
...+++|-|-||.|+ +.-.||.-+|+.| | .+. +|.|....- |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsil-SV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSIL-SVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCcee-EEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 356789999999987 8889999999887 2 332 566543221 11
Q ss_pred -----------------CceEEEEEEcCHHHHHHHHHh-CCCccCCe
Q 025001 211 -----------------PTGEAFVEFANAEDSKAAMAK-DRMTLGSR 239 (259)
Q Consensus 211 -----------------~~G~afV~F~~~~~A~~Al~~-~~~~l~gr 239 (259)
.-=||.|+|.+.+.|.+.-.. +|..+...
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 012799999999999998877 99988753
No 225
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=53.29 E-value=29 Score=30.28 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=15.9
Q ss_pred EEEEeCCHHHHHHHHHh
Q 025001 98 AFCVLGYPLQVDFALQR 114 (259)
Q Consensus 98 afV~F~~~e~A~~Al~~ 114 (259)
|||+|++..+|..|++.
T Consensus 1 aFVtF~~~~~a~~~~q~ 17 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQL 17 (325)
T ss_pred CEEEECCHHHHHHHHHH
Confidence 79999999999999984
No 226
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=47.30 E-value=40 Score=21.93 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=12.3
Q ss_pred HHHHHHhccCCCcc
Q 025001 185 DDIMDFFKDFVLSE 198 (259)
Q Consensus 185 ~dl~~~F~~~g~~~ 198 (259)
.+|+++|+..|.+.
T Consensus 9 ~~iR~~fs~lG~I~ 22 (62)
T PF15513_consen 9 AEIRQFFSQLGEIA 22 (62)
T ss_pred HHHHHHHHhcCcEE
Confidence 68999999999874
No 227
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=46.88 E-value=17 Score=29.08 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=40.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecC--CC--CceeEEEEEeCCHHHHHHHHHhccccCCCe
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHK--NN--KFTGEAFCVLGYPLQVDFALQRNRQNMGRR 122 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~--~g--~~~G~afV~F~~~e~A~~Al~~~~~~~~~r 122 (259)
.++||.+ |.+..-++|..+-+ +-+.-+.+++ ++ ..+|--||+|.+.++|.+.++........+
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~ 177 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAET 177 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccch
Confidence 5678877 55555556665555 3333333332 33 578999999999999999887655444433
No 228
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=46.22 E-value=76 Score=22.78 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHhcc-CCCccceEEEeeCC----CCCCceEEEEEEcCHHHHHH
Q 025001 180 FSAGKDDIMDFFKD-FVLSEDSIHITMNS----DGRPTGEAFVEFANAEDSKA 227 (259)
Q Consensus 180 ~~~te~dl~~~F~~-~g~~~~~v~i~~~~----~g~~~G~afV~F~~~~~A~~ 227 (259)
.+.+..+|++-+.. |+...+.|.+..-. .|+++|||.| |+|.+.|.+
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 46777888866644 56443334443222 3577777766 566666654
No 229
>PF14893 PNMA: PNMA
Probab=44.43 E-value=14 Score=32.71 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=35.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhc----CCCceEEE--EecCCCCceeEEEEEeCCHHH
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFH----GLDIVDVL--FVHKNNKFTGEAFCVLGYPLQ 107 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~----~~~iv~v~--~~~~~g~~~G~afV~F~~~e~ 107 (259)
+..+.+.|.|||.+|++++|.+... .+|-..|. +..+.-. .--|+|+|...-+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~-~~aalve~~e~~n 74 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN-AKAALVEFAEDVN 74 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc-cceeeeecccccc
Confidence 3366899999999999999999776 33444442 2222211 2368999876543
No 230
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=43.05 E-value=21 Score=29.82 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=27.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCcc
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSE 198 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~ 198 (259)
....++|+-|+|..+|++-|.++.+.+|.+.
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 4567899999999999999999999988654
No 231
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=41.95 E-value=91 Score=19.85 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=33.2
Q ss_pred CHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCc
Q 025001 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMT 235 (259)
Q Consensus 183 te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~ 235 (259)
.-.+|-++|.+.|.-..++..... +. ++.--+.+.+.+.|.++|+.+|..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~--~~-~~~~rl~~~~~~~~~~~L~~~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADT--SE-FGILRLIVSDPDKAKEALKEAGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEec--CC-CCEEEEEECCHHHHHHHHHHCCCE
Confidence 346788999888854334544332 22 467777788888888988877654
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=41.92 E-value=53 Score=28.42 Aligned_cols=81 Identities=19% Similarity=0.159 Sum_probs=58.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC--------CCCCceEEEEEEcCHHHHHH----HHH---
Q 025001 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS--------DGRPTGEAFVEFANAEDSKA----AMA--- 230 (259)
Q Consensus 166 ~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~--------~g~~~G~afV~F~~~~~A~~----Al~--- 230 (259)
+.-..+.|...|+..+++-..+...|-+||.++ +|.++.+. .-+..-...+.|-+.+.+.. .|+
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIE-SiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIE-SIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCcee-EEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 345567799999999999999999999999997 89888654 22334568899999887642 232
Q ss_pred hCCCccCCeEEEEEeCC
Q 025001 231 KDRMTLGSRYIELFPSS 247 (259)
Q Consensus 231 ~~~~~l~gr~i~V~~~~ 247 (259)
+=.+.|....|.|...+
T Consensus 90 EfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHhcCCcceeEEEEE
Confidence 23466777777765443
No 233
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=41.41 E-value=20 Score=29.85 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=28.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEE
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDV 85 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v 85 (259)
......++|+-|+|..+|++-|..+.+.++++..
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 3445679999999999999999999999876553
No 234
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.37 E-value=39 Score=30.23 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=42.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCC---CCCceEEEEEEcCHHHHHHHHHh-CCC
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD---GRPTGEAFVEFANAEDSKAAMAK-DRM 234 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~---g~~~G~afV~F~~~~~A~~Al~~-~~~ 234 (259)
-..|.|++||+..+++++.+-..+|-.-.....+..... ..-.+.|||.|..+++...-... +|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 457899999999999999988888542222233332221 22367899999999994443333 544
No 235
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=35.18 E-value=41 Score=22.00 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhcCC-CceEEEEecCCCCceeEEEE
Q 025001 66 FDCTEVDVAEFFHGL-DIVDVLFVHKNNKFTGEAFC 100 (259)
Q Consensus 66 ~~~te~~L~~~F~~~-~iv~v~~~~~~g~~~G~afV 100 (259)
|..-|.+|..+|-+. .+.++.|.-+..-.+|-|||
T Consensus 28 F~~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 28 FRLVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 455677888888777 77887776544444567776
No 236
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.94 E-value=9.1 Score=34.78 Aligned_cols=79 Identities=11% Similarity=-0.097 Sum_probs=57.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHH
Q 025001 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 249 (259)
Q Consensus 172 ~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~ 249 (259)
+.|+..||...++.++.-+|..||+|. .+.+.... .|...-.+||+-.. .+|..+|+. ..+.+.|-.++|.++...
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~-~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIIS-MEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhHhhcccccccchhhhhccCCccee-eccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 467889999999999999999999875 55554333 44556678877654 456677765 667788888888777655
Q ss_pred HHH
Q 025001 250 EMD 252 (259)
Q Consensus 250 ~~~ 252 (259)
-..
T Consensus 83 ~~~ 85 (572)
T KOG4365|consen 83 SEK 85 (572)
T ss_pred hhh
Confidence 433
No 237
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=32.28 E-value=70 Score=26.00 Aligned_cols=51 Identities=16% Similarity=0.330 Sum_probs=35.0
Q ss_pred CHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh--CCCccC
Q 025001 183 GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK--DRMTLG 237 (259)
Q Consensus 183 te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~--~~~~l~ 237 (259)
+.++..++...++... +.|. .+|...|-+.+...+.++|..|++. ....++
T Consensus 25 ~~~~A~~~l~~~~~p~--~ViK--adGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg 77 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY--VVIK--ADGLAAGKGVVIADDREEALEALREIFVDRKFG 77 (194)
T ss_dssp SHHHHHHHHHHHSSSE--EEEE--ESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTC
T ss_pred CHHHHHHHHHhcCCCc--eEEc--cCCCCCCCEEEEeCCHHHHHHHHHHhccccccC
Confidence 5677888888766431 2333 3466666677788999999999975 545554
No 238
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=31.80 E-value=72 Score=25.59 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=39.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccC-CCccceEEEeeCCCC--CCceEEEEEEcCHHHHHHHHHhCCCccCCeEE
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDF-VLSEDSIHITMNSDG--RPTGEAFVEFANAEDSKAAMAKDRMTLGSRYI 241 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~-g~~~~~v~i~~~~~g--~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i 241 (259)
++++.. .|+++|.++-.-- |.+. .|.+-....+ ..+|--||.|.+.+.|.+.++.+.....-+.|
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~-nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el 179 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGH-NVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETEL 179 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccce-EeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHH
Confidence 445555 5565555554433 3332 3444333233 56889999999999999988775555544443
No 239
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=30.69 E-value=78 Score=22.08 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=30.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEe
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVL 102 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F 102 (259)
..-|||+|++..+-|.=...+.+.++.-.+.+.-.+....||+|-+.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 33799999998887766555555444444444433223779998776
No 240
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=30.25 E-value=1.3e+02 Score=23.18 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=37.3
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CCCccceEEEeeCCCCCCceEEEEEEcCHHHHHH
Q 025001 173 LRLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKA 227 (259)
Q Consensus 173 i~V~nLp~~~te~dl~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~ 227 (259)
-++--++..++..+|++.++. |++....|..+..+.|.- -|||.+....+|..
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aid 137 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALD 137 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHH
Confidence 444556789999999999987 675444666665555533 49999987766543
No 241
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=30.05 E-value=35 Score=19.59 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHhcCC
Q 025001 66 FDCTEVDVAEFFHGL 80 (259)
Q Consensus 66 ~~~te~~L~~~F~~~ 80 (259)
.++++++|++.|...
T Consensus 19 ~Dtd~~~Lk~vF~~i 33 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRI 33 (36)
T ss_dssp S---HHHHHHHHHCS
T ss_pred ccCCHHHHHHHHHHh
Confidence 468899999999865
No 242
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=29.94 E-value=1.1e+02 Score=21.19 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHhcc-CCCccceEEEe--eCC--CCCCceEEEEEEcCHHHHHH
Q 025001 180 FSAGKDDIMDFFKD-FVLSEDSIHIT--MNS--DGRPTGEAFVEFANAEDSKA 227 (259)
Q Consensus 180 ~~~te~dl~~~F~~-~g~~~~~v~i~--~~~--~g~~~G~afV~F~~~~~A~~ 227 (259)
.+.+..||++-+.. ++...+.|.+. ... .+.+.|||.| |++.+.+.+
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 56777888877754 45444344432 222 3566777766 566666654
No 243
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=29.68 E-value=23 Score=23.34 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=27.1
Q ss_pred HHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025001 185 DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231 (259)
Q Consensus 185 ~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~ 231 (259)
++|.+.|..+.....-|.+ .+|.-|.|.++|..++..
T Consensus 27 ~~v~~~~~~~~~f~k~vkL----------~aF~pF~s~~~ALe~~~a 63 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL----------KAFSPFKSAEEALENANA 63 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh----------hhccCCCCHHHHHHHHHH
Confidence 6888888876533323444 399999999999887754
No 244
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=28.68 E-value=33 Score=34.03 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=55.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccc--cCCCeEEEEEecchH
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQ--NMGRRYVEVFRSKRQ 132 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~--~~~~r~i~v~~~~~~ 132 (259)
.+..+-|.+-..+..-|..+|++|| +......+.. -.|.|+|.+.+.|-.|+. +.|. ..-|-+.+|..+...
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3556677888889999999999996 4455543322 279999999999999997 4554 345666777776655
Q ss_pred HHHHH
Q 025001 133 EYYKA 137 (259)
Q Consensus 133 ~~~~~ 137 (259)
.++++
T Consensus 375 ~~~ep 379 (1007)
T KOG4574|consen 375 PMYEP 379 (1007)
T ss_pred ccccC
Confidence 55443
No 245
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=27.93 E-value=2.4e+02 Score=20.54 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHhcc-CCCccceEEEeeCC----CCCCceEEEEEEcCHHHHHH
Q 025001 179 PFSAGKDDIMDFFKD-FVLSEDSIHITMNS----DGRPTGEAFVEFANAEDSKA 227 (259)
Q Consensus 179 p~~~te~dl~~~F~~-~g~~~~~v~i~~~~----~g~~~G~afV~F~~~~~A~~ 227 (259)
..+.+..+|++-... +|...+.|.+..-. .|+++|||-| |.|.+.|..
T Consensus 29 ~~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 29 SPTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 356778888877754 56554344444333 4678888876 566666554
No 246
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=26.81 E-value=87 Score=20.67 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=40.9
Q ss_pred HHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 185 DDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 185 ~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
++|.+-|...|.....|.-+... +..+--.-||++....+...++ +=+.|++..|.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~--~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY--KIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee--ehHhhCCeEEEEecC
Confidence 56888888888543355555555 5666678888888776644443 336788998888654
No 247
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=26.13 E-value=2.1e+02 Score=22.74 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=17.4
Q ss_pred HHHHHHHHhccccCCCeEEEE
Q 025001 106 LQVDFALQRNRQNMGRRYVEV 126 (259)
Q Consensus 106 e~A~~Al~~~~~~~~~r~i~v 126 (259)
+-|++|++.-...+++|.|..
T Consensus 10 ~~A~ravE~aa~~iGgRCIS~ 30 (180)
T PF14097_consen 10 EYAKRAVEIAAKNIGGRCISQ 30 (180)
T ss_pred HHHHHHHHHHHHHhCcEEEec
Confidence 458889988888899999875
No 248
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=25.70 E-value=1.3e+02 Score=21.43 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCHHHHH---HHhccCCCccceEEEee-----CCCCCCceEEEEEEc
Q 025001 172 ILRLRGLPFSAGKDDIM---DFFKDFVLSEDSIHITM-----NSDGRPTGEAFVEFA 220 (259)
Q Consensus 172 ~i~V~nLp~~~te~dl~---~~F~~~g~~~~~v~i~~-----~~~g~~~G~afV~F~ 220 (259)
..|+.|||.++-+..+. +.+..+.. .+.|.. ...+.+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~---~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGP---DVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCS---EEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCC---CeEEEEecccCccCCCCCceEEEEEE
Confidence 45889999999987765 55555442 344443 346778888776654
No 249
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.18 E-value=98 Score=26.40 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccC
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDF 194 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~ 194 (259)
.....|+||||++|..-|..++...
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~ 119 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEK 119 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhcc
Confidence 3457899999999999999998763
No 250
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.60 E-value=1.2e+02 Score=20.02 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.6
Q ss_pred EEEEEEcCHHHHHHHHHh
Q 025001 214 EAFVEFANAEDSKAAMAK 231 (259)
Q Consensus 214 ~afV~F~~~~~A~~Al~~ 231 (259)
+.+|.|.|..+|.+|-+.
T Consensus 3 ~~~i~F~st~~a~~~ek~ 20 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKL 20 (73)
T ss_pred eEEEEECCHHHHHHHHHH
Confidence 689999999999888764
No 251
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=23.25 E-value=1e+02 Score=27.72 Aligned_cols=58 Identities=22% Similarity=0.221 Sum_probs=41.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCC-CceE-EEEe-cC---CCCceeEEEEEeCCHHHHHHHHH
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGL-DIVD-VLFV-HK---NNKFTGEAFCVLGYPLQVDFALQ 113 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~-~iv~-v~~~-~~---~g~~~G~afV~F~~~e~A~~Al~ 113 (259)
-+.|-|++||...++++|.+-..++ ..+. ..+. .. ..+-.+.|||-|..+++...-..
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~ 70 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRR 70 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHh
Confidence 5689999999999999999988876 3333 2222 11 12346789999999999655554
No 252
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=23.15 E-value=78 Score=21.09 Aligned_cols=60 Identities=25% Similarity=0.292 Sum_probs=39.5
Q ss_pred HHHHHHhccCCCccceEEEeeCCC-CCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 185 DDIMDFFKDFVLSEDSIHITMNSD-GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 185 ~dl~~~F~~~g~~~~~v~i~~~~~-g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
++|.+-|++.|.....|+-+...+ +.+--.=+|+.....+-...+ +=+.|+|+.|.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il--~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEIL--NIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceE--eehhhCCeeEEEecC
Confidence 468888999996554666666554 445557777777654333322 447889999988654
No 253
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.31 E-value=76 Score=18.08 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=15.3
Q ss_pred CCCHHHHHHHhccCCCcc
Q 025001 181 SAGKDDIMDFFKDFVLSE 198 (259)
Q Consensus 181 ~~te~dl~~~F~~~g~~~ 198 (259)
+.++++|++++..+|+..
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 578999999999998654
No 254
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=22.09 E-value=2.1e+02 Score=20.33 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=25.2
Q ss_pred HHHHhccCCCc---cc-eEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 025001 187 IMDFFKDFVLS---ED-SIHITMNSDGRPTGEAFVEFANAEDSKAAM 229 (259)
Q Consensus 187 l~~~F~~~g~~---~~-~v~i~~~~~g~~~G~afV~F~~~~~A~~Al 229 (259)
+...|++||-. .. .|..+-. ...+.-...|+|.|.+.|..+-
T Consensus 25 ~~~a~~~~Ggr~LvRGG~v~~lEG-~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 25 AKPAIEKFGGRYLVRGGEVETLEG-EWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred hHHHHHHhCCeeEeeCCCeeeccC-CCCcccEEEEEcCCHHHHHHHh
Confidence 45677888732 11 1222211 2344567999999999887654
No 255
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=21.80 E-value=15 Score=34.48 Aligned_cols=59 Identities=8% Similarity=0.171 Sum_probs=43.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCC-CceEEEEec--CCCCceeEEEEEeCC---HHHHHHHHH
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGL-DIVDVLFVH--KNNKFTGEAFCVLGY---PLQVDFALQ 113 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~-~iv~v~~~~--~~g~~~G~afV~F~~---~e~A~~Al~ 113 (259)
..|+|||+|++++++-.+|..+++.+ ++..+.+.+ ...+..-+.+|+|.- ...|.-||.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 37899999999999999999999988 666654432 233455578889975 455555554
No 256
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=21.23 E-value=2.5e+02 Score=20.37 Aligned_cols=42 Identities=5% Similarity=-0.066 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCceE--EEEecCCCCceeEEEEEeCCHHHHHHHHH
Q 025001 70 EVDVAEFFHGLDIVD--VLFVHKNNKFTGEAFCVLGYPLQVDFALQ 113 (259)
Q Consensus 70 e~~L~~~F~~~~iv~--v~~~~~~g~~~G~afV~F~~~e~A~~Al~ 113 (259)
+.+|..+.+.+||.+ |.+..+++ .=||++++.+.+..-.+|.
T Consensus 26 WPE~~a~lk~agi~nYSIfLde~~n--~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 26 WPELLALLKEAGIRNYSIFLDEEEN--LLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred cHHHHHHHHHcCCceeEEEecCCcc--cEEEEEEEcChHHHHHHHh
Confidence 357888889999876 33433343 3499999997777666664
No 257
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.16 E-value=49 Score=29.87 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=46.2
Q ss_pred CCCCEEEEcCCCCCCCHH--------HHHHHhcCC--C-ceEEEEec--CCCCceeEEEEEeCCHHHHHHHHH
Q 025001 54 PPFPVVRLRGLPFDCTEV--------DVAEFFHGL--D-IVDVLFVH--KNNKFTGEAFCVLGYPLQVDFALQ 113 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~--------~L~~~F~~~--~-iv~v~~~~--~~g~~~G~afV~F~~~e~A~~Al~ 113 (259)
...+.+|+.+.+...+.+ ++..+|... . +..+...+ .+..++|.-|++|...+.+++++.
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 346788999998877776 999999974 2 23344432 367788999999999999999994
No 258
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=20.83 E-value=1.3e+02 Score=21.53 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=28.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCH
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYP 105 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~ 105 (259)
..-|||++++..+-|.=-..+-+.++--.+.+.-.+....||+|-++-+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 34799999887766544333333333333443323334449998876543
No 259
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.43 E-value=53 Score=29.69 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=45.3
Q ss_pred ccEEEEcCCCCCCCHH--------HHHHHhccC--CCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHH
Q 025001 170 TGILRLRGLPFSAGKD--------DIMDFFKDF--VLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMA 230 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~--------dl~~~F~~~--g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~ 230 (259)
.+.+|+.+.+...+.+ ++...|.+. +.. ..|...++. +..++|.-|++|.....|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~-~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPP-SQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCCh-hhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3456777776665554 999999995 333 356776666 66788999999999999999985
Done!