Query 025001
Match_columns 259
No_of_seqs 287 out of 1709
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 18:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 2.2E-36 7.6E-41 245.0 20.2 175 53-254 10-188 (196)
2 4f02_A Polyadenylate-binding p 100.0 3.3E-36 1.1E-40 248.1 20.0 169 54-254 13-186 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 1E-34 3.5E-39 228.6 19.7 160 57-247 1-165 (166)
4 2cjk_A Nuclear polyadenylated 100.0 1.8E-35 6.2E-40 233.7 13.2 161 55-249 2-166 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 4.4E-34 1.5E-38 225.8 19.7 159 55-246 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 1.1E-33 3.7E-38 223.0 20.4 158 56-246 2-167 (167)
7 3nmr_A Cugbp ELAV-like family 100.0 1.7E-33 5.6E-38 223.7 19.3 161 55-247 2-175 (175)
8 2g4b_A Splicing factor U2AF 65 100.0 2.4E-34 8.1E-39 228.3 14.3 159 55-247 3-172 (172)
9 2qfj_A FBP-interacting repress 100.0 8E-34 2.7E-38 233.3 18.0 173 55-249 27-205 (216)
10 1fje_B Nucleolin RBD12, protei 100.0 1.8E-34 6.2E-39 229.9 11.7 162 52-248 9-173 (175)
11 2yh0_A Splicing factor U2AF 65 100.0 4.5E-33 1.5E-37 225.8 18.0 182 55-249 3-194 (198)
12 3smz_A Protein raver-1, ribonu 100.0 8.2E-32 2.8E-36 230.7 20.2 166 56-251 95-266 (284)
13 3smz_A Protein raver-1, ribonu 100.0 1.3E-31 4.3E-36 229.5 19.5 153 55-250 21-176 (284)
14 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-31 4.4E-36 230.3 16.0 158 52-250 37-198 (292)
15 3tyt_A Heterogeneous nuclear r 100.0 3.5E-31 1.2E-35 216.8 17.7 185 55-246 3-204 (205)
16 3pgw_A U1-A; protein-RNA compl 100.0 7.7E-31 2.6E-35 224.4 19.8 189 53-247 6-281 (282)
17 3sde_A Paraspeckle component 1 100.0 4.6E-31 1.6E-35 223.9 17.0 154 53-249 19-179 (261)
18 2ghp_A U4/U6 snRNA-associated 100.0 1.9E-31 6.6E-36 229.3 13.7 169 55-249 116-291 (292)
19 2adc_A Polypyrimidine tract-bi 100.0 3.4E-30 1.2E-34 214.4 13.7 186 53-248 31-227 (229)
20 1qm9_A Polypyrimidine tract-bi 100.0 4.3E-30 1.5E-34 208.7 12.8 184 56-248 3-196 (198)
21 2kn4_A Immunoglobulin G-bindin 99.9 8.2E-24 2.8E-28 165.8 13.6 136 93-249 11-150 (158)
22 4f25_A Polyadenylate-binding p 99.9 1.6E-22 5.5E-27 150.3 9.7 108 55-186 4-113 (115)
23 2dha_A FLJ20171 protein; RRM d 99.9 1.3E-22 4.4E-27 152.3 8.8 91 168-258 21-114 (123)
24 2db1_A Heterogeneous nuclear r 99.9 8.6E-22 2.9E-26 147.0 11.5 91 168-259 15-108 (118)
25 2hgl_A HNRPF protein, heteroge 99.9 1.4E-21 4.6E-26 149.2 11.0 90 168-258 42-134 (136)
26 2i2y_A Fusion protein consists 99.9 1.1E-21 3.8E-26 152.4 10.3 136 91-248 9-147 (150)
27 2dnn_A RNA-binding protein 12; 99.9 3.4E-21 1.1E-25 141.6 11.2 86 168-255 14-99 (109)
28 2lmi_A GRSF-1, G-rich sequence 99.9 1.5E-21 5E-26 143.2 9.2 91 167-258 8-101 (107)
29 4fxv_A ELAV-like protein 1; RN 99.9 3.2E-21 1.1E-25 139.4 10.0 80 168-248 17-98 (99)
30 2cpy_A RNA-binding protein 12; 99.8 7E-21 2.4E-25 141.2 11.6 89 168-256 13-101 (114)
31 2dnn_A RNA-binding protein 12; 99.8 4.4E-21 1.5E-25 141.0 10.3 84 54-137 14-98 (109)
32 1wg5_A Heterogeneous nuclear r 99.8 7E-22 2.4E-26 144.2 5.9 88 168-255 13-100 (104)
33 2hgm_A HNRPF protein, heteroge 99.8 2.2E-21 7.6E-26 145.9 7.2 85 168-252 40-124 (126)
34 1wel_A RNA-binding protein 12; 99.8 7.6E-21 2.6E-25 143.0 10.1 90 167-256 22-111 (124)
35 3s8s_A Histone-lysine N-methyl 99.8 3.4E-20 1.2E-24 136.5 11.5 83 168-251 4-88 (110)
36 1wez_A HnRNP H', FTP-3, hetero 99.8 1.3E-20 4.5E-25 136.9 9.1 78 53-130 12-90 (102)
37 2dha_A FLJ20171 protein; RRM d 99.8 2E-20 6.8E-25 140.3 10.1 85 56-140 23-113 (123)
38 2lxi_A RNA-binding protein 10; 99.8 3.1E-21 1.1E-25 137.3 5.2 79 170-249 1-83 (91)
39 1wez_A HnRNP H', FTP-3, hetero 99.8 1.4E-20 4.8E-25 136.8 8.6 80 168-249 13-92 (102)
40 2hgm_A HNRPF protein, heteroge 99.8 1E-20 3.6E-25 142.3 7.8 82 53-134 39-123 (126)
41 2lkz_A RNA-binding protein 5; 99.8 2.7E-20 9.4E-25 133.3 9.3 80 168-247 7-93 (95)
42 2db1_A Heterogeneous nuclear r 99.8 1.4E-19 4.9E-24 134.9 13.3 87 53-139 14-105 (118)
43 2cpy_A RNA-binding protein 12; 99.8 1.2E-19 4.2E-24 134.4 12.6 86 53-138 12-100 (114)
44 2hgl_A HNRPF protein, heteroge 99.8 1.3E-19 4.5E-24 138.2 11.1 86 53-138 41-131 (136)
45 3s7r_A Heterogeneous nuclear r 99.8 1.5E-19 5E-24 127.3 10.4 78 168-246 9-87 (87)
46 2hgn_A Heterogeneous nuclear r 99.8 4.5E-21 1.5E-25 146.8 2.0 83 168-252 44-126 (139)
47 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.9E-19 6.4E-24 126.6 10.0 81 168-249 4-86 (87)
48 1wg5_A Heterogeneous nuclear r 99.8 1.6E-19 5.4E-24 131.6 9.8 81 53-133 12-95 (104)
49 1s79_A Lupus LA protein; RRM, 99.8 7.3E-20 2.5E-24 133.2 7.9 80 168-248 9-88 (103)
50 2do4_A Squamous cell carcinoma 99.8 3.3E-19 1.1E-23 128.8 11.2 81 168-249 15-96 (100)
51 3p5t_L Cleavage and polyadenyl 99.8 5.6E-20 1.9E-24 130.4 6.7 79 171-250 2-84 (90)
52 1wel_A RNA-binding protein 12; 99.8 6.9E-19 2.4E-23 132.2 13.1 88 53-140 22-112 (124)
53 2wbr_A GW182, gawky, LD47780P; 99.8 1.7E-19 5.8E-24 125.6 8.9 82 169-256 6-88 (89)
54 3md1_A Nuclear and cytoplasmic 99.8 2E-19 7E-24 125.3 9.1 78 171-249 2-81 (83)
55 2la6_A RNA-binding protein FUS 99.8 5E-19 1.7E-23 127.6 11.4 81 166-247 9-99 (99)
56 2dgw_A Probable RNA-binding pr 99.8 3E-19 1E-23 126.8 10.0 80 168-249 8-87 (91)
57 3n9u_C Cleavage and polyadenyl 99.8 2.9E-19 9.9E-24 139.6 10.8 85 169-254 54-142 (156)
58 2cqc_A Arginine/serine-rich sp 99.8 5.8E-19 2E-23 126.1 11.3 80 167-247 12-93 (95)
59 2ywk_A Putative RNA-binding pr 99.8 3.4E-19 1.2E-23 127.4 10.1 79 168-247 14-93 (95)
60 2dgs_A DAZ-associated protein 99.8 3.6E-19 1.2E-23 128.3 10.1 81 168-249 8-89 (99)
61 2dgw_A Probable RNA-binding pr 99.8 6.6E-19 2.3E-23 125.0 10.9 78 53-130 7-85 (91)
62 3ns6_A Eukaryotic translation 99.8 8.4E-20 2.9E-24 132.1 6.3 83 168-251 4-95 (100)
63 2lmi_A GRSF-1, G-rich sequence 99.8 1.9E-19 6.4E-24 131.9 8.2 87 53-139 8-99 (107)
64 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.6E-19 1.2E-23 124.6 9.1 79 168-247 5-85 (85)
65 1whw_A Hypothetical protein ri 99.8 4E-19 1.4E-23 128.1 9.6 82 168-250 6-89 (99)
66 3ulh_A THO complex subunit 4; 99.8 6.1E-19 2.1E-23 128.9 10.7 80 167-247 26-106 (107)
67 2cpz_A CUG triplet repeat RNA- 99.8 8.9E-19 3E-23 129.8 11.3 81 168-249 23-105 (115)
68 2e5h_A Zinc finger CCHC-type a 99.8 8.8E-19 3E-23 125.0 10.8 79 168-247 14-94 (94)
69 2dnh_A Bruno-like 5, RNA bindi 99.8 9.2E-19 3.2E-23 127.5 11.0 81 168-249 13-97 (105)
70 4f25_A Polyadenylate-binding p 99.8 4.7E-19 1.6E-23 131.5 9.5 77 170-248 5-82 (115)
71 2dnz_A Probable RNA-binding pr 99.8 5.6E-19 1.9E-23 126.3 9.5 81 168-249 3-85 (95)
72 1x5u_A Splicing factor 3B subu 99.8 7E-19 2.4E-23 128.2 10.0 82 167-249 12-95 (105)
73 2cq0_A Eukaryotic translation 99.8 8.3E-19 2.8E-23 127.4 10.2 82 167-249 12-95 (103)
74 4fxv_A ELAV-like protein 1; RN 99.8 1E-18 3.4E-23 126.2 10.5 76 55-130 18-97 (99)
75 2d9p_A Polyadenylate-binding p 99.8 8.1E-19 2.8E-23 127.4 10.1 81 167-249 12-93 (103)
76 2dng_A Eukaryotic translation 99.8 1.5E-18 5E-23 126.1 11.3 81 167-249 12-93 (103)
77 2mss_A Protein (musashi1); RNA 99.8 2.4E-19 8.2E-24 122.6 6.7 74 172-246 1-75 (75)
78 2x1f_A MRNA 3'-END-processing 99.8 5.4E-19 1.9E-23 126.7 8.8 80 170-250 2-83 (96)
79 1x5t_A Splicing factor 3B subu 99.8 5.2E-19 1.8E-23 126.7 8.7 81 168-249 3-86 (96)
80 2cqp_A RNA-binding protein 12; 99.8 1.9E-18 6.5E-23 124.3 11.7 81 168-248 13-94 (98)
81 2lea_A Serine/arginine-rich sp 99.8 2E-19 6.8E-24 137.3 6.8 82 167-249 44-127 (135)
82 2dgo_A Cytotoxic granule-assoc 99.8 2.1E-18 7.3E-23 127.7 12.1 82 167-249 12-95 (115)
83 2dnm_A SRP46 splicing factor; 99.8 6.9E-19 2.4E-23 127.8 9.0 82 167-249 10-93 (103)
84 2ek1_A RNA-binding protein 12; 99.8 1E-18 3.5E-23 124.9 9.7 80 168-248 13-94 (95)
85 2do0_A HnRNP M, heterogeneous 99.8 2.3E-18 8E-23 127.2 12.0 80 168-248 13-93 (114)
86 2fy1_A RNA-binding motif prote 99.8 1.2E-18 4.1E-23 129.5 10.4 81 168-249 5-86 (116)
87 2jrs_A RNA-binding protein 39; 99.8 8.6E-19 2.9E-23 128.6 9.3 82 167-249 23-106 (108)
88 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.3E-19 2.5E-23 127.4 8.8 81 168-249 10-92 (102)
89 2cq3_A RNA-binding protein 9; 99.8 2.5E-18 8.6E-23 124.8 11.6 82 167-250 12-94 (103)
90 1p27_B RNA-binding protein 8A; 99.8 1.7E-18 5.9E-23 126.3 10.6 81 167-248 20-102 (106)
91 1x4h_A RNA-binding protein 28; 99.8 1.4E-18 4.8E-23 127.8 9.9 82 167-249 12-101 (111)
92 3lqv_A PRE-mRNA branch site pr 99.8 7.2E-19 2.5E-23 130.3 8.3 103 54-197 6-110 (115)
93 2hgn_A Heterogeneous nuclear r 99.8 9E-20 3.1E-24 139.6 3.4 80 53-132 43-123 (139)
94 1rk8_A CG8781-PA, CG8781-PA pr 99.8 8.1E-19 2.8E-23 138.4 8.7 83 167-250 69-153 (165)
95 3ucg_A Polyadenylate-binding p 99.8 1.4E-18 4.7E-23 122.6 9.1 79 169-248 5-84 (89)
96 2dgv_A HnRNP M, heterogeneous 99.8 2E-18 6.9E-23 122.6 9.8 79 168-248 6-85 (92)
97 2dhg_A TRNA selenocysteine ass 99.8 7.8E-19 2.7E-23 127.7 7.7 81 168-249 7-90 (104)
98 1x5s_A Cold-inducible RNA-bind 99.8 1.7E-18 5.9E-23 125.4 9.5 81 168-249 10-92 (102)
99 2cq4_A RNA binding motif prote 99.8 1.6E-18 5.4E-23 128.3 9.4 83 168-251 23-106 (114)
100 1p1t_A Cleavage stimulation fa 99.8 6.4E-19 2.2E-23 128.1 7.1 85 168-253 6-92 (104)
101 2dh8_A DAZ-associated protein 99.8 8.5E-19 2.9E-23 127.8 7.8 83 167-250 13-96 (105)
102 2kt5_A RNA and export factor-b 99.8 8.3E-18 2.8E-22 126.3 13.3 83 166-249 31-114 (124)
103 2khc_A Testis-specific RNP-typ 99.8 2.6E-18 9E-23 127.8 10.4 79 167-246 37-117 (118)
104 2cpe_A RNA-binding protein EWS 99.8 4.1E-18 1.4E-22 125.8 11.3 82 168-249 13-103 (113)
105 1wi8_A EIF-4B, eukaryotic tran 99.8 2E-18 6.9E-23 125.6 9.4 80 168-249 13-94 (104)
106 2cqg_A TDP-43, TAR DNA-binding 99.8 3.9E-18 1.3E-22 123.8 10.8 81 168-250 13-94 (103)
107 2dgp_A Bruno-like 4, RNA bindi 99.8 2.6E-18 8.9E-23 125.3 9.6 82 167-249 10-96 (106)
108 1iqt_A AUF1, heterogeneous nuc 99.8 3.5E-19 1.2E-23 121.7 4.6 74 172-246 1-75 (75)
109 3s8s_A Histone-lysine N-methyl 99.8 7.3E-18 2.5E-22 124.0 12.0 78 55-132 5-86 (110)
110 1oo0_B CG8781-PA, drosophila Y 99.8 3.1E-18 1.1E-22 125.8 10.0 81 167-248 23-105 (110)
111 3s7r_A Heterogeneous nuclear r 99.8 5.7E-18 1.9E-22 119.0 10.8 76 53-128 8-86 (87)
112 1x4b_A Heterogeneous nuclear r 99.8 1.9E-18 6.6E-23 128.2 8.8 81 168-249 25-106 (116)
113 2rs2_A Musashi-1, RNA-binding 99.8 2.2E-18 7.6E-23 126.6 9.0 82 167-249 22-104 (109)
114 2dng_A Eukaryotic translation 99.8 6.4E-18 2.2E-22 122.7 11.4 78 53-130 12-91 (103)
115 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.7E-18 1.6E-22 123.4 10.6 81 167-249 12-93 (103)
116 2lkz_A RNA-binding protein 5; 99.8 2.6E-18 8.8E-23 123.0 8.9 76 55-130 8-93 (95)
117 2cqd_A RNA-binding region cont 99.8 5E-18 1.7E-22 126.0 10.7 81 167-249 14-96 (116)
118 2cpf_A RNA binding motif prote 99.8 2.6E-18 8.8E-23 123.6 8.8 81 168-249 3-88 (98)
119 3r27_A HnRNP L, heterogeneous 99.8 1.9E-18 6.4E-23 124.2 8.0 78 167-250 18-98 (100)
120 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1E-18 3.5E-23 119.9 6.4 74 171-246 1-76 (77)
121 2cph_A RNA binding motif prote 99.8 3.4E-18 1.2E-22 124.8 9.6 82 167-249 12-97 (107)
122 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.7E-19 1.6E-23 128.1 4.9 80 167-248 16-97 (100)
123 2err_A Ataxin-2-binding protei 99.8 2.7E-18 9.1E-23 126.1 8.9 81 167-249 26-107 (109)
124 2div_A TRNA selenocysteine ass 99.8 3.7E-18 1.3E-22 123.0 9.5 81 168-248 7-93 (99)
125 2kxn_B Transformer-2 protein h 99.8 1.6E-18 5.5E-23 131.2 7.9 81 167-248 43-125 (129)
126 2m2b_A RNA-binding protein 10; 99.8 1.1E-18 3.9E-23 132.3 6.9 82 167-249 20-108 (131)
127 2dgx_A KIAA0430 protein; RRM d 99.8 3.2E-18 1.1E-22 122.8 8.8 79 168-249 7-90 (96)
128 3q2s_C Cleavage and polyadenyl 99.8 3.4E-18 1.2E-22 141.8 10.1 85 169-254 67-155 (229)
129 4a8x_A RNA-binding protein wit 99.7 2E-18 6.9E-23 121.5 7.1 79 169-248 3-84 (88)
130 1x4e_A RNA binding motif, sing 99.7 7.3E-19 2.5E-23 123.1 4.6 79 168-247 3-83 (85)
131 1s79_A Lupus LA protein; RRM, 99.7 3E-18 1E-22 124.6 7.9 77 54-130 9-87 (103)
132 2nlw_A Eukaryotic translation 99.7 3E-18 1E-22 125.0 7.8 79 168-248 13-99 (105)
133 2fc9_A NCL protein; structure 99.7 6.3E-18 2.2E-22 122.2 9.4 78 168-249 13-91 (101)
134 1sjq_A Polypyrimidine tract-bi 99.7 1.7E-18 5.8E-23 125.7 6.3 77 168-250 14-93 (105)
135 2lxi_A RNA-binding protein 10; 99.7 1.2E-18 4E-23 123.9 5.3 74 57-130 2-81 (91)
136 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-17 3.7E-22 128.0 11.1 79 167-246 60-140 (140)
137 3ex7_B RNA-binding protein 8A; 99.7 5.8E-18 2E-22 127.4 9.3 81 167-248 19-101 (126)
138 2krb_A Eukaryotic translation 99.7 1.4E-18 4.8E-23 120.7 5.5 71 171-243 2-80 (81)
139 2la6_A RNA-binding protein FUS 99.7 1.9E-17 6.6E-22 119.2 11.7 77 53-129 10-98 (99)
140 2do4_A Squamous cell carcinoma 99.7 2.5E-17 8.4E-22 118.9 12.2 78 53-130 14-94 (100)
141 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.9E-18 6.5E-23 124.9 6.3 78 53-130 16-96 (100)
142 2ek1_A RNA-binding protein 12; 99.7 8E-18 2.7E-22 120.2 9.3 77 54-130 13-93 (95)
143 2cqp_A RNA-binding protein 12; 99.7 2E-17 6.9E-22 118.9 11.4 78 53-130 12-93 (98)
144 1u6f_A Tcubp1, RNA-binding pro 99.7 8.7E-18 3E-22 128.6 10.0 82 167-249 39-122 (139)
145 2dgs_A DAZ-associated protein 99.7 1.4E-17 4.9E-22 119.9 10.6 78 53-130 7-87 (99)
146 1wi8_A EIF-4B, eukaryotic tran 99.7 1.3E-17 4.3E-22 121.3 10.2 77 54-130 13-92 (104)
147 1x5o_A RNA binding motif, sing 99.7 2.6E-17 9E-22 121.6 12.1 80 168-248 23-111 (114)
148 2xs2_A Deleted in azoospermia- 99.7 2.5E-18 8.7E-23 124.6 6.2 80 168-249 7-86 (102)
149 2jwn_A Embryonic polyadenylate 99.7 6.2E-18 2.1E-22 126.9 8.5 79 169-248 35-114 (124)
150 2cq4_A RNA binding motif prote 99.7 9E-18 3.1E-22 124.2 9.0 79 54-132 23-104 (114)
151 2jvr_A Nucleolar protein 3; RN 99.7 6.9E-18 2.4E-22 124.1 8.3 78 168-249 26-105 (111)
152 3n9u_C Cleavage and polyadenyl 99.7 1.7E-17 5.7E-22 129.6 10.8 80 55-134 54-139 (156)
153 2d9p_A Polyadenylate-binding p 99.7 2.5E-17 8.6E-22 119.5 11.1 78 53-130 12-91 (103)
154 1x4a_A Splicing factor, argini 99.7 4E-17 1.4E-21 119.7 12.2 79 168-249 20-99 (109)
155 2cpi_A CCR4-NOT transcription 99.7 6.6E-18 2.3E-22 124.4 8.0 81 168-249 13-101 (111)
156 2ki2_A SS-DNA binding protein 99.7 1.6E-18 5.4E-23 122.7 4.4 79 171-251 2-82 (90)
157 3p5t_L Cleavage and polyadenyl 99.7 4.9E-18 1.7E-22 120.3 6.9 74 57-130 2-81 (90)
158 2ad9_A Polypyrimidine tract-bi 99.7 7.8E-18 2.7E-22 125.1 8.3 79 167-251 28-109 (119)
159 2fc8_A NCL protein; structure 99.7 2.4E-17 8.2E-22 119.3 10.6 78 53-130 12-90 (102)
160 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.9E-17 6.6E-22 129.2 10.7 81 167-248 36-118 (156)
161 2cqc_A Arginine/serine-rich sp 99.7 4.2E-17 1.5E-21 116.3 11.6 78 53-130 12-93 (95)
162 2dgv_A HnRNP M, heterogeneous 99.7 2E-17 6.8E-22 117.4 9.8 78 53-130 5-84 (92)
163 2fc9_A NCL protein; structure 99.7 2.2E-17 7.5E-22 119.3 10.1 77 53-130 12-89 (101)
164 2cpz_A CUG triplet repeat RNA- 99.7 4.1E-17 1.4E-21 120.8 11.7 78 53-130 22-103 (115)
165 2cq1_A PTB-like protein L; RRM 99.7 3.7E-17 1.3E-21 118.3 11.0 78 168-251 13-93 (101)
166 1x5u_A Splicing factor 3B subu 99.7 2.7E-17 9.4E-22 119.6 10.4 78 53-130 12-93 (105)
167 2fc8_A NCL protein; structure 99.7 2.3E-17 8E-22 119.4 9.8 79 167-249 12-92 (102)
168 2rs2_A Musashi-1, RNA-binding 99.7 1.7E-17 5.9E-22 121.8 9.0 79 52-130 21-102 (109)
169 1fj7_A Nucleolin RBD1, protein 99.7 3.1E-18 1.1E-22 123.9 4.9 81 168-249 15-95 (101)
170 2ywk_A Putative RNA-binding pr 99.7 2.2E-17 7.5E-22 117.9 9.3 78 53-130 13-93 (95)
171 1whw_A Hypothetical protein ri 99.7 3E-17 1E-21 118.2 10.1 78 53-130 5-86 (99)
172 2hvz_A Splicing factor, argini 99.7 1.4E-17 4.9E-22 120.3 8.2 71 57-130 1-73 (101)
173 2err_A Ataxin-2-binding protei 99.7 1.7E-17 5.7E-22 121.9 8.6 80 51-130 24-105 (109)
174 2dis_A Unnamed protein product 99.7 9.5E-18 3.2E-22 123.0 7.2 81 168-249 6-92 (109)
175 2dnh_A Bruno-like 5, RNA bindi 99.7 7.9E-17 2.7E-21 117.2 12.0 78 53-130 12-95 (105)
176 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.8E-17 9.4E-22 114.9 9.2 77 53-129 4-84 (85)
177 2cq0_A Eukaryotic translation 99.7 4.8E-17 1.6E-21 118.0 10.8 79 52-130 11-93 (103)
178 1x4b_A Heterogeneous nuclear r 99.7 2E-17 7E-22 122.6 8.9 78 53-130 24-104 (116)
179 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.2E-17 1.1E-21 115.1 9.4 76 55-130 5-84 (87)
180 1x4c_A Splicing factor, argini 99.7 7.5E-18 2.6E-22 123.5 6.3 75 168-249 13-93 (108)
181 2kt5_A RNA and export factor-b 99.7 1.2E-16 4.2E-21 119.8 13.2 79 52-130 31-112 (124)
182 2cq3_A RNA-binding protein 9; 99.7 8.4E-17 2.9E-21 116.7 11.8 78 53-130 12-91 (103)
183 2jrs_A RNA-binding protein 39; 99.7 6.1E-17 2.1E-21 118.7 11.1 78 53-130 23-104 (108)
184 2dnz_A Probable RNA-binding pr 99.7 4E-17 1.4E-21 116.5 9.9 77 54-130 3-83 (95)
185 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.2E-17 2.1E-21 117.4 11.1 78 53-130 12-91 (103)
186 3pgw_S U1-70K; protein-RNA com 99.7 9.9E-18 3.4E-22 151.4 8.1 81 168-249 100-182 (437)
187 2krb_A Eukaryotic translation 99.7 8.3E-18 2.8E-22 116.7 5.8 71 56-126 1-80 (81)
188 3md1_A Nuclear and cytoplasmic 99.7 4.6E-17 1.6E-21 113.2 9.4 74 57-130 2-79 (83)
189 1wex_A Hypothetical protein (r 99.7 2.9E-17 9.8E-22 119.5 8.6 77 168-250 13-92 (104)
190 3lqv_A PRE-mRNA branch site pr 99.7 5.7E-17 2E-21 119.9 10.4 80 168-250 6-86 (115)
191 2e5j_A Methenyltetrahydrofolat 99.7 4.1E-17 1.4E-21 117.1 9.2 77 168-249 17-94 (97)
192 1x4d_A Matrin 3; structural ge 99.7 1.9E-17 6.6E-22 119.8 7.5 75 168-248 13-91 (102)
193 2do0_A HnRNP M, heterogeneous 99.7 1.1E-16 3.7E-21 118.2 11.7 78 53-130 12-92 (114)
194 3ulh_A THO complex subunit 4; 99.7 7E-17 2.4E-21 117.9 10.5 78 53-130 26-106 (107)
195 2j8a_A Histone-lysine N-methyl 99.7 3.1E-17 1.1E-21 121.7 8.6 83 171-254 3-101 (136)
196 1x5t_A Splicing factor 3B subu 99.7 3.2E-17 1.1E-21 117.3 8.5 77 54-130 3-84 (96)
197 2cpx_A Hypothetical protein FL 99.7 3.6E-17 1.2E-21 121.0 8.9 80 167-249 22-105 (115)
198 2a3j_A U1 small nuclear ribonu 99.7 4.7E-17 1.6E-21 122.6 9.6 80 168-250 27-111 (127)
199 2cqg_A TDP-43, TAR DNA-binding 99.7 1.3E-16 4.5E-21 115.6 11.7 77 53-130 12-91 (103)
200 3ns6_A Eukaryotic translation 99.7 2.1E-17 7.1E-22 119.5 7.3 80 55-134 5-95 (100)
201 1x4a_A Splicing factor, argini 99.7 1.4E-16 4.6E-21 116.8 11.8 77 53-130 19-97 (109)
202 2dnq_A RNA-binding protein 4B; 99.7 6.4E-17 2.2E-21 114.4 9.6 74 168-249 6-80 (90)
203 2fy1_A RNA-binding motif prote 99.7 5.6E-17 1.9E-21 120.4 9.7 77 54-130 5-84 (116)
204 2cpe_A RNA-binding protein EWS 99.7 8E-17 2.7E-21 118.8 10.5 78 53-130 12-101 (113)
205 2mss_A Protein (musashi1); RNA 99.7 1.9E-17 6.6E-22 113.0 6.6 71 58-128 1-74 (75)
206 2e5h_A Zinc finger CCHC-type a 99.7 8.6E-17 2.9E-21 114.6 10.2 77 53-129 13-93 (94)
207 2f3j_A RNA and export factor b 99.7 4.7E-17 1.6E-21 129.7 9.8 81 168-249 86-167 (177)
208 2dh8_A DAZ-associated protein 99.7 3.4E-17 1.2E-21 119.2 8.2 78 53-130 13-93 (105)
209 1fjc_A Nucleolin RBD2, protein 99.7 2E-17 6.8E-22 118.4 6.9 76 168-248 14-90 (96)
210 2dhg_A TRNA selenocysteine ass 99.7 3.9E-17 1.3E-21 118.6 8.5 78 53-130 6-88 (104)
211 2nlw_A Eukaryotic translation 99.7 3.8E-17 1.3E-21 119.1 8.3 76 55-130 14-98 (105)
212 4f02_A Polyadenylate-binding p 99.7 6.1E-17 2.1E-21 132.7 10.5 82 168-250 13-96 (213)
213 3r27_A HnRNP L, heterogeneous 99.7 5.7E-17 2E-21 116.5 8.9 75 52-130 17-95 (100)
214 2cph_A RNA binding motif prote 99.7 1E-16 3.6E-21 116.9 10.5 78 53-130 12-95 (107)
215 2cpj_A Non-POU domain-containi 99.7 8.5E-17 2.9E-21 115.8 9.9 77 167-249 12-89 (99)
216 2khc_A Testis-specific RNP-typ 99.7 8.8E-17 3E-21 119.5 10.2 78 52-129 36-117 (118)
217 2cqb_A Peptidyl-prolyl CIS-tra 99.7 7.2E-17 2.4E-21 116.8 9.5 78 53-130 9-90 (102)
218 2dgo_A Cytotoxic granule-assoc 99.7 1.4E-16 4.9E-21 117.8 11.3 78 53-130 12-93 (115)
219 2wbr_A GW182, gawky, LD47780P; 99.7 8.6E-17 3E-21 111.9 9.3 76 56-135 7-84 (89)
220 3ucg_A Polyadenylate-binding p 99.7 5.9E-17 2E-21 114.2 8.7 75 56-130 6-83 (89)
221 1x5s_A Cold-inducible RNA-bind 99.7 6.4E-17 2.2E-21 117.0 8.9 78 53-130 9-90 (102)
222 2dnm_A SRP46 splicing factor; 99.7 5.7E-17 1.9E-21 117.6 8.6 78 53-130 10-91 (103)
223 2jvr_A Nucleolar protein 3; RN 99.7 3.3E-17 1.1E-21 120.5 7.4 76 53-130 25-103 (111)
224 2x1f_A MRNA 3'-END-processing 99.7 7.4E-17 2.5E-21 115.5 9.0 77 56-132 2-82 (96)
225 1why_A Hypothetical protein ri 99.7 9.2E-17 3.1E-21 115.2 9.4 75 168-248 15-92 (97)
226 2la4_A Nuclear and cytoplasmic 99.7 4.1E-17 1.4E-21 117.9 7.5 75 168-248 25-100 (101)
227 1l3k_A Heterogeneous nuclear r 99.7 8.7E-17 3E-21 129.4 10.1 83 167-250 10-93 (196)
228 2ytc_A PRE-mRNA-splicing facto 99.7 1.3E-16 4.6E-21 111.4 9.8 74 168-247 10-85 (85)
229 2div_A TRNA selenocysteine ass 99.7 9.1E-17 3.1E-21 115.6 9.1 78 53-130 6-92 (99)
230 1nu4_A U1A RNA binding domain; 99.7 1.1E-17 3.8E-22 119.9 4.2 80 168-250 6-90 (97)
231 1x4h_A RNA-binding protein 28; 99.7 1.6E-16 5.5E-21 116.6 10.6 78 53-130 12-99 (111)
232 1fj7_A Nucleolin RBD1, protein 99.7 1.1E-17 3.7E-22 121.0 4.1 79 52-130 13-93 (101)
233 1fjc_A Nucleolin RBD2, protein 99.7 5.9E-17 2E-21 115.9 7.7 76 53-130 13-89 (96)
234 1x4e_A RNA binding motif, sing 99.7 3.7E-17 1.3E-21 114.3 6.5 74 54-127 3-80 (85)
235 2lcw_A RNA-binding protein FUS 99.5 2.1E-18 7.2E-23 128.0 0.0 82 168-250 5-96 (116)
236 2cqh_A IGF-II mRNA-binding pro 99.7 4.6E-17 1.6E-21 115.8 6.9 76 168-249 6-83 (93)
237 2cqd_A RNA-binding region cont 99.7 2.4E-16 8.4E-21 116.7 11.1 78 53-130 14-94 (116)
238 2jvo_A Nucleolar protein 3; nu 99.7 1.4E-16 4.6E-21 116.8 9.5 75 167-249 28-103 (108)
239 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.1E-17 1.4E-21 111.8 6.2 73 57-129 1-76 (77)
240 1x4f_A Matrin 3; structural ge 99.7 7E-17 2.4E-21 118.6 7.7 76 167-248 22-101 (112)
241 2xnq_A Nuclear polyadenylated 99.7 1.9E-16 6.5E-21 113.7 9.8 74 167-248 19-94 (97)
242 2a3j_A U1 small nuclear ribonu 99.7 1.1E-16 3.8E-21 120.5 8.9 77 54-131 27-109 (127)
243 2cpd_A Apobec-1 stimulating pr 99.7 2.7E-16 9.2E-21 113.2 10.5 76 166-249 11-89 (99)
244 2hvz_A Splicing factor, argini 99.7 5.6E-17 1.9E-21 117.2 6.9 74 171-249 1-75 (101)
245 2kxn_B Transformer-2 protein h 99.7 1.2E-16 4.1E-21 120.8 9.0 79 52-130 42-124 (129)
246 1wg1_A KIAA1579 protein, homol 99.7 1.2E-16 4.2E-21 112.6 8.4 73 169-248 4-77 (88)
247 2cpf_A RNA binding motif prote 99.7 1.4E-16 4.7E-21 114.4 8.7 77 54-130 3-86 (98)
248 1sjq_A Polypyrimidine tract-bi 99.7 4.8E-17 1.6E-21 118.0 6.3 74 53-130 13-90 (105)
249 1x4f_A Matrin 3; structural ge 99.7 2.2E-16 7.4E-21 116.0 9.8 74 53-130 22-100 (112)
250 1p27_B RNA-binding protein 8A; 99.7 2.3E-16 8E-21 114.9 9.9 77 54-130 21-101 (106)
251 1fxl_A Paraneoplastic encephal 99.7 2.4E-16 8.4E-21 123.2 10.7 78 170-248 2-81 (167)
252 3egn_A RNA-binding protein 40; 99.7 7.3E-17 2.5E-21 124.1 7.5 81 168-248 43-129 (143)
253 2voo_A Lupus LA protein; RNA-b 99.7 1.9E-16 6.6E-21 127.9 10.3 79 169-248 108-186 (193)
254 1x4g_A Nucleolysin TIAR; struc 99.7 1.5E-16 5E-21 116.7 8.8 76 168-249 23-99 (109)
255 2dgu_A Heterogeneous nuclear r 99.7 1.7E-16 6E-21 115.1 9.0 74 168-249 9-83 (103)
256 2e5j_A Methenyltetrahydrofolat 99.7 9.6E-17 3.3E-21 115.2 7.5 76 53-130 16-92 (97)
257 2cq1_A PTB-like protein L; RRM 99.7 4E-16 1.4E-20 112.8 10.8 74 53-130 12-89 (101)
258 2dgt_A RNA-binding protein 30; 99.7 4.3E-16 1.5E-20 110.6 10.8 74 168-249 8-82 (92)
259 2dnp_A RNA-binding protein 14; 99.7 1.7E-16 5.9E-21 112.2 8.7 74 168-249 7-81 (90)
260 1u6f_A Tcubp1, RNA-binding pro 99.7 3.3E-16 1.1E-20 119.7 10.8 80 51-130 37-120 (139)
261 2dgp_A Bruno-like 4, RNA bindi 99.7 1.5E-16 5.3E-21 115.8 8.5 78 53-130 10-94 (106)
262 1iqt_A AUF1, heterogeneous nuc 99.7 2.7E-17 9.1E-22 112.2 4.1 71 58-128 1-74 (75)
263 2cpx_A Hypothetical protein FL 99.7 3.3E-16 1.1E-20 115.8 10.3 78 53-130 22-103 (115)
264 1wg1_A KIAA1579 protein, homol 99.7 2.2E-16 7.5E-21 111.2 8.8 73 54-130 3-76 (88)
265 1whx_A Hypothetical protein ri 99.7 9.3E-17 3.2E-21 118.3 7.1 75 168-248 8-83 (111)
266 3d2w_A TAR DNA-binding protein 99.7 1.5E-16 5.1E-21 112.5 7.9 77 168-250 9-85 (89)
267 1wf1_A RNA-binding protein RAL 99.7 4.5E-16 1.6E-20 114.2 10.7 73 168-248 25-99 (110)
268 1x5o_A RNA binding motif, sing 99.7 1.5E-15 5.3E-20 112.0 13.5 78 53-130 22-110 (114)
269 2cpi_A CCR4-NOT transcription 99.7 2.6E-16 8.9E-21 115.8 8.8 77 54-130 13-99 (111)
270 2jvo_A Nucleolar protein 3; nu 99.7 3.1E-16 1.1E-20 114.8 9.2 74 51-130 26-101 (108)
271 2pe8_A Splicing factor 45; RRM 99.7 8.3E-16 2.8E-20 111.9 11.2 84 168-252 6-97 (105)
272 1x4c_A Splicing factor, argini 99.7 6E-16 2E-20 113.3 10.6 72 54-130 13-91 (108)
273 2m2b_A RNA-binding protein 10; 99.7 1E-16 3.6E-21 121.4 6.7 77 53-130 20-106 (131)
274 1wex_A Hypothetical protein (r 99.7 4.5E-16 1.5E-20 113.2 9.7 73 54-130 13-89 (104)
275 1p1t_A Cleavage stimulation fa 99.7 3.5E-16 1.2E-20 113.5 9.0 79 55-133 7-89 (104)
276 2xs2_A Deleted in azoospermia- 99.7 7.2E-17 2.5E-21 116.8 5.4 75 55-130 8-84 (102)
277 1oo0_B CG8781-PA, drosophila Y 99.7 3.3E-16 1.1E-20 114.9 8.9 77 54-130 24-104 (110)
278 2dgx_A KIAA0430 protein; RRM d 99.7 3.7E-16 1.3E-20 111.9 8.9 75 54-130 7-88 (96)
279 3md3_A Nuclear and cytoplasmic 99.7 2.8E-16 9.5E-21 122.8 8.9 77 171-248 1-78 (166)
280 2jwn_A Embryonic polyadenylate 99.7 3.4E-16 1.2E-20 117.3 8.9 76 55-130 35-113 (124)
281 1b7f_A Protein (SXL-lethal pro 99.7 2.8E-16 9.5E-21 123.2 8.8 79 169-248 2-82 (168)
282 2ad9_A Polypyrimidine tract-bi 99.7 2.5E-16 8.6E-21 116.9 7.9 74 53-130 28-105 (119)
283 1x4d_A Matrin 3; structural ge 99.7 3E-16 1E-20 113.5 8.0 74 53-130 12-90 (102)
284 2e5g_A U6 snRNA-specific termi 99.7 4E-16 1.4E-20 111.3 8.6 77 168-249 6-82 (94)
285 2kvi_A Nuclear polyadenylated 99.6 2.6E-16 8.7E-21 112.7 7.5 73 168-248 8-82 (96)
286 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.7E-16 2.3E-20 117.9 10.4 78 51-128 58-139 (140)
287 4a8x_A RNA-binding protein wit 99.6 3.3E-16 1.1E-20 110.0 7.9 75 56-130 4-83 (88)
288 3ex7_B RNA-binding protein 8A; 99.6 4.4E-16 1.5E-20 117.0 8.8 78 53-130 19-100 (126)
289 2xnq_A Nuclear polyadenylated 99.6 7E-16 2.4E-20 110.7 9.4 72 53-130 19-93 (97)
290 2dnl_A Cytoplasmic polyadenyla 99.6 3.7E-16 1.3E-20 115.5 8.1 74 168-244 6-83 (114)
291 3q2s_C Cleavage and polyadenyl 99.6 4.4E-16 1.5E-20 129.1 9.4 80 55-134 67-152 (229)
292 2dnq_A RNA-binding protein 4B; 99.6 7E-16 2.4E-20 109.0 9.2 72 53-130 5-78 (90)
293 1nu4_A U1A RNA binding domain; 99.6 2.2E-16 7.4E-21 113.1 6.2 76 54-130 6-87 (97)
294 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-15 4E-20 119.0 10.6 78 53-130 36-117 (156)
295 2hzc_A Splicing factor U2AF 65 99.6 5.6E-16 1.9E-20 108.6 7.8 72 168-245 4-86 (87)
296 3beg_B Splicing factor, argini 99.6 2.4E-16 8.1E-21 116.8 6.1 75 168-249 14-94 (115)
297 1x5p_A Negative elongation fac 99.6 1.3E-15 4.4E-20 109.2 9.6 74 168-249 13-87 (97)
298 2dis_A Unnamed protein product 99.6 5.4E-16 1.8E-20 113.5 7.7 77 54-130 6-90 (109)
299 2cpj_A Non-POU domain-containi 99.6 1.4E-15 4.6E-20 109.5 9.6 74 53-130 12-87 (99)
300 2ytc_A PRE-mRNA-splicing facto 99.6 1.5E-15 5.2E-20 105.9 9.5 72 54-129 10-84 (85)
301 2dnl_A Cytoplasmic polyadenyla 99.6 7.5E-16 2.6E-20 113.9 8.2 75 53-128 5-84 (114)
302 2e44_A Insulin-like growth fac 99.6 3.7E-16 1.3E-20 111.7 6.3 79 168-250 13-93 (96)
303 2cqh_A IGF-II mRNA-binding pro 99.6 3.4E-16 1.2E-20 111.3 6.0 73 53-130 5-81 (93)
304 3egn_A RNA-binding protein 40; 99.6 4.6E-16 1.6E-20 119.6 7.0 78 53-130 42-128 (143)
305 2lea_A Serine/arginine-rich sp 99.6 3.6E-16 1.2E-20 119.1 6.2 78 53-130 44-125 (135)
306 2cjk_A Nuclear polyadenylated 99.6 5.7E-16 1.9E-20 121.4 7.4 80 169-250 2-82 (167)
307 1why_A Hypothetical protein ri 99.6 2.5E-15 8.6E-20 107.6 10.1 73 54-130 15-91 (97)
308 2la4_A Nuclear and cytoplasmic 99.6 7.6E-16 2.6E-20 111.2 7.3 73 53-129 24-98 (101)
309 2dgt_A RNA-binding protein 30; 99.6 2.9E-15 1E-19 106.2 10.2 72 53-130 7-80 (92)
310 2kn4_A Immunoglobulin G-bindin 99.6 1.4E-15 4.9E-20 118.6 9.3 78 53-130 67-148 (158)
311 1sjr_A Polypyrimidine tract-bi 99.6 1.6E-15 5.4E-20 118.3 9.1 78 168-249 44-124 (164)
312 2e5g_A U6 snRNA-specific termi 99.6 1.7E-15 6E-20 107.9 8.6 73 53-129 5-79 (94)
313 3d2w_A TAR DNA-binding protein 99.6 2.2E-15 7.7E-20 106.4 8.8 74 54-131 9-83 (89)
314 2dnp_A RNA-binding protein 14; 99.6 1.7E-15 5.9E-20 107.0 8.1 72 53-130 6-79 (90)
315 2f3j_A RNA and export factor b 99.6 1.5E-15 5.2E-20 120.9 8.7 80 52-131 84-166 (177)
316 2hzc_A Splicing factor U2AF 65 99.6 1E-15 3.6E-20 107.2 6.8 71 54-128 4-86 (87)
317 2qfj_A FBP-interacting repress 99.6 1.5E-15 5E-20 124.0 8.8 80 168-248 26-107 (216)
318 2cq2_A Hypothetical protein LO 99.6 8.5E-16 2.9E-20 113.0 6.6 74 168-247 23-104 (114)
319 2ki2_A SS-DNA binding protein 99.6 2.7E-16 9.1E-21 111.1 3.7 75 57-132 2-80 (90)
320 1wf0_A TDP-43, TAR DNA-binding 99.6 3.9E-16 1.3E-20 109.9 4.5 76 168-249 3-78 (88)
321 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3.5E-15 1.2E-19 117.4 10.4 77 54-130 70-150 (165)
322 2dgu_A Heterogeneous nuclear r 99.6 2.4E-15 8.1E-20 109.0 8.6 71 54-130 9-81 (103)
323 2voo_A Lupus LA protein; RNA-b 99.6 3.7E-15 1.3E-19 120.3 10.3 75 56-130 109-185 (193)
324 2diu_A KIAA0430 protein; struc 99.6 2.8E-15 9.5E-20 105.3 8.1 70 169-248 7-83 (96)
325 2cpd_A Apobec-1 stimulating pr 99.6 1.4E-14 4.7E-19 104.2 11.6 72 53-130 12-87 (99)
326 1x4g_A Nucleolysin TIAR; struc 99.6 3.4E-15 1.2E-19 109.3 8.3 74 53-130 22-97 (109)
327 2kvi_A Nuclear polyadenylated 99.6 2.1E-15 7.2E-20 107.9 7.0 72 53-130 7-81 (96)
328 3tyt_A Heterogeneous nuclear r 99.6 3.5E-15 1.2E-19 121.6 9.2 74 169-247 3-78 (205)
329 1whx_A Hypothetical protein ri 99.6 2E-15 6.9E-20 111.0 7.0 72 55-130 9-82 (111)
330 3beg_B Splicing factor, argini 99.6 1.7E-15 5.8E-20 112.2 6.6 72 54-130 14-92 (115)
331 1wf1_A RNA-binding protein RAL 99.6 8.6E-15 2.9E-19 107.3 10.3 71 54-130 25-98 (110)
332 3zzy_A Polypyrimidine tract-bi 99.6 8E-15 2.7E-19 110.2 10.3 77 168-249 26-106 (130)
333 1fje_B Nucleolin RBD12, protei 99.6 8E-16 2.7E-20 121.6 4.9 81 167-248 10-90 (175)
334 2e5i_A Heterogeneous nuclear r 99.6 1.1E-14 3.7E-19 108.9 10.6 75 169-249 24-102 (124)
335 3nmr_A Cugbp ELAV-like family 99.6 4E-15 1.4E-19 117.2 8.6 79 169-248 2-87 (175)
336 2bz2_A Negative elongation fac 99.6 7E-15 2.4E-19 109.8 8.6 75 168-250 37-112 (121)
337 1wf0_A TDP-43, TAR DNA-binding 99.6 2.7E-15 9.2E-20 105.5 6.0 72 55-130 4-76 (88)
338 2i2y_A Fusion protein consists 99.6 5.7E-15 1.9E-19 114.3 8.2 75 53-130 70-146 (150)
339 1x5p_A Negative elongation fac 99.6 2.2E-14 7.5E-19 102.7 10.7 72 53-130 12-85 (97)
340 2e5i_A Heterogeneous nuclear r 99.6 4.7E-14 1.6E-18 105.4 12.6 73 54-130 23-100 (124)
341 3v4m_A Splicing factor U2AF 65 99.6 8.3E-15 2.9E-19 106.6 8.2 84 168-252 3-100 (105)
342 2diu_A KIAA0430 protein; struc 99.6 8.6E-15 2.9E-19 102.8 7.9 67 56-130 9-82 (96)
343 3pgw_A U1-A; protein-RNA compl 99.6 1.1E-14 3.6E-19 124.0 10.1 79 168-249 7-90 (282)
344 2lcw_A RNA-binding protein FUS 99.3 2.6E-16 9E-21 116.6 0.0 78 54-131 5-94 (116)
345 2cq2_A Hypothetical protein LO 99.5 1.9E-14 6.5E-19 105.8 8.4 71 55-129 24-103 (114)
346 2g4b_A Splicing factor U2AF 65 99.5 3E-14 1E-18 112.1 9.9 76 54-129 92-171 (172)
347 1sjr_A Polypyrimidine tract-bi 99.5 2.2E-14 7.7E-19 111.8 8.9 77 53-131 43-123 (164)
348 2dit_A HIV TAT specific factor 99.5 6.6E-14 2.2E-18 103.0 10.9 78 168-249 13-102 (112)
349 1jmt_A Splicing factor U2AF 35 99.5 4.2E-15 1.5E-19 108.0 3.6 72 175-247 20-104 (104)
350 3pgw_S U1-70K; protein-RNA com 99.5 3.8E-14 1.3E-18 128.0 10.5 79 53-131 99-181 (437)
351 2e44_A Insulin-like growth fac 99.5 2.8E-14 9.5E-19 101.9 7.6 76 54-131 13-91 (96)
352 2adc_A Polypyrimidine tract-bi 99.5 2.1E-14 7E-19 118.9 8.0 76 168-248 32-109 (229)
353 3ue2_A Poly(U)-binding-splicin 99.5 5.4E-14 1.8E-18 104.4 9.1 83 169-252 19-112 (118)
354 2j8a_A Histone-lysine N-methyl 99.5 2.8E-14 9.6E-19 105.9 7.3 74 57-130 3-94 (136)
355 2yh0_A Splicing factor U2AF 65 99.5 1.6E-13 5.4E-18 110.3 12.3 78 53-130 111-192 (198)
356 3sde_A Paraspeckle component 1 99.5 6.7E-14 2.3E-18 118.0 10.0 75 167-247 19-94 (261)
357 3u1l_A PRE-mRNA-splicing facto 99.5 2.8E-14 9.7E-19 118.2 7.3 78 168-251 132-231 (240)
358 1qm9_A Polypyrimidine tract-bi 99.5 3.1E-14 1E-18 114.8 6.8 74 170-248 3-78 (198)
359 3zzy_A Polypyrimidine tract-bi 99.5 1.5E-13 5.1E-18 103.2 9.3 75 53-130 25-104 (130)
360 2bz2_A Negative elongation fac 99.5 1.4E-13 4.6E-18 102.8 8.9 72 53-130 36-109 (121)
361 2pe8_A Splicing factor 45; RRM 99.5 2.8E-13 9.6E-18 98.5 10.0 80 55-134 7-96 (105)
362 3s6e_A RNA-binding protein 39; 99.4 7E-13 2.4E-17 97.7 10.2 85 168-256 5-100 (114)
363 2dit_A HIV TAT specific factor 99.4 7.9E-13 2.7E-17 97.2 9.7 76 53-130 12-100 (112)
364 3u1l_A PRE-mRNA-splicing facto 99.4 5.2E-13 1.8E-17 110.6 7.7 75 53-131 131-228 (240)
365 2d9o_A DNAJ (HSP40) homolog, s 99.4 5E-12 1.7E-16 90.9 10.4 74 170-249 10-90 (100)
366 3tht_A Alkylated DNA repair pr 99.3 3.3E-12 1.1E-16 111.2 8.1 74 167-246 15-96 (345)
367 1jmt_A Splicing factor U2AF 35 99.3 9.7E-13 3.3E-17 95.4 3.2 69 61-129 20-103 (104)
368 3v4m_A Splicing factor U2AF 65 99.3 8.8E-12 3E-16 90.5 7.8 80 56-135 5-100 (105)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 4.3E-11 1.5E-15 85.9 10.3 71 56-130 10-88 (100)
370 3ue2_A Poly(U)-binding-splicin 99.2 3.2E-11 1.1E-15 89.3 9.3 79 56-134 20-111 (118)
371 1owx_A Lupus LA protein, SS-B, 99.2 8.6E-11 2.9E-15 86.8 10.4 84 166-255 14-102 (121)
372 3tht_A Alkylated DNA repair pr 99.2 4E-11 1.4E-15 104.4 8.3 64 53-119 15-81 (345)
373 3s6e_A RNA-binding protein 39; 99.1 7.1E-10 2.4E-14 81.5 11.5 81 55-137 6-98 (114)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 1.9E-10 6.6E-15 79.9 6.6 72 169-248 6-85 (91)
375 3dxb_A Thioredoxin N-terminall 98.9 1.8E-09 6.1E-14 88.5 8.2 71 181-252 140-216 (222)
376 1ufw_A Synaptojanin 2; RNP dom 98.9 8.2E-10 2.8E-14 77.1 3.9 72 168-247 13-93 (95)
377 2dnr_A Synaptojanin-1; RRM dom 98.8 1.2E-08 4E-13 71.0 7.9 69 56-130 7-84 (91)
378 1owx_A Lupus LA protein, SS-B, 98.8 3.9E-08 1.3E-12 72.6 10.2 73 54-130 16-94 (121)
379 2l9w_A U4/U6 snRNA-associated- 98.7 1.4E-07 4.7E-12 67.3 8.8 79 168-254 19-103 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 3.2E-08 1.1E-12 69.1 5.3 68 56-129 15-92 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.5 8.8E-07 3E-11 62.6 9.9 89 54-183 6-99 (104)
382 3dxb_A Thioredoxin N-terminall 98.5 4.2E-07 1.4E-11 74.3 8.9 68 67-134 140-215 (222)
383 2dhx_A Poly (ADP-ribose) polym 97.9 6.3E-05 2.1E-09 53.1 8.8 73 168-248 6-83 (104)
384 1whv_A Poly(A)-specific ribonu 97.9 4.4E-05 1.5E-09 53.3 7.9 55 54-114 14-68 (100)
385 3p3d_A Nucleoporin 53; structu 97.8 2.3E-05 7.9E-10 57.8 4.9 87 169-256 6-106 (132)
386 2l9w_A U4/U6 snRNA-associated- 97.7 0.00014 4.8E-09 51.8 8.0 71 55-129 20-97 (117)
387 1whv_A Poly(A)-specific ribonu 97.7 0.00015 5E-09 50.6 7.9 54 169-231 15-68 (100)
388 1wwh_A Nucleoporin 35, nucleop 97.7 0.00018 6.3E-09 52.3 7.9 79 168-253 22-101 (119)
389 3ctr_A Poly(A)-specific ribonu 97.5 9.1E-05 3.1E-09 51.8 3.8 53 170-231 6-58 (101)
390 3ctr_A Poly(A)-specific ribonu 97.5 0.00013 4.4E-09 51.1 4.5 51 58-114 8-58 (101)
391 1wwh_A Nucleoporin 35, nucleop 97.3 0.0011 3.9E-08 48.1 8.1 78 54-136 22-101 (119)
392 1uw4_A UPF3X; nonsense mediate 97.2 0.0017 5.8E-08 45.0 7.8 65 171-236 2-70 (91)
393 1wey_A Calcipressin 1; structu 96.8 0.0031 1E-07 44.6 6.1 73 169-247 4-82 (104)
394 1uw4_A UPF3X; nonsense mediate 96.5 0.012 4.2E-07 40.6 7.4 61 57-117 2-68 (91)
395 3p3d_A Nucleoporin 53; structu 96.3 0.0069 2.3E-07 44.6 5.6 79 56-135 7-102 (132)
396 2l08_A Regulator of nonsense t 95.6 0.011 3.7E-07 41.3 3.6 67 169-236 8-78 (97)
397 3pq1_A Poly(A) RNA polymerase; 95.4 0.0074 2.5E-07 54.2 2.9 57 56-116 53-110 (464)
398 3pq1_A Poly(A) RNA polymerase; 95.0 0.013 4.5E-07 52.6 3.4 64 169-238 52-115 (464)
399 1wey_A Calcipressin 1; structu 94.9 0.052 1.8E-06 38.3 5.4 71 56-130 5-82 (104)
400 3d45_A Poly(A)-specific ribonu 94.3 0.12 4.2E-06 47.1 7.9 55 54-114 438-492 (507)
401 2l08_A Regulator of nonsense t 94.1 0.066 2.2E-06 37.3 4.3 62 56-117 9-76 (97)
402 3d45_A Poly(A)-specific ribonu 91.6 0.6 2E-05 42.5 8.3 54 169-231 439-492 (507)
403 4e8u_A Putative uncharacterize 81.7 3.2 0.00011 31.8 5.9 81 169-252 11-117 (172)
404 4e8u_A Putative uncharacterize 80.3 4 0.00014 31.3 6.0 56 58-114 14-82 (172)
405 1xn9_A 30S ribosomal protein S 53.0 22 0.00074 24.6 4.5 48 180-228 28-80 (101)
406 4eyt_A Telomerase associated p 50.2 56 0.0019 22.0 8.6 56 53-114 9-65 (129)
407 2v94_A RPS24, 30S ribosomal pr 48.6 25 0.00086 24.6 4.3 48 180-228 37-89 (107)
408 1ywx_A 30S ribosomal protein S 46.8 23 0.0008 24.5 3.9 47 180-227 28-79 (102)
409 3u5c_Y RP50, 40S ribosomal pro 42.6 48 0.0017 24.2 5.2 47 180-227 33-84 (135)
410 2xzm_P RPS24E; ribosome, trans 42.3 41 0.0014 25.0 4.8 48 180-228 31-83 (149)
411 2g1d_A 30S ribosomal protein S 36.7 24 0.0008 24.3 2.6 47 180-227 29-80 (98)
412 3j21_T 50S ribosomal protein L 34.2 72 0.0025 21.2 4.6 54 174-229 26-80 (86)
413 2hiy_A Hypothetical protein; C 27.8 1.5E+02 0.0051 22.6 6.2 128 57-219 7-143 (183)
414 2kpo_A Rossmann 2X2 fold prote 27.5 1.3E+02 0.0045 19.6 6.0 58 182-253 33-91 (110)
415 3lpe_A Putative transcription 25.8 84 0.0029 21.0 4.0 39 211-255 49-90 (92)
416 1igq_A Transcriptional repress 21.5 68 0.0023 19.9 2.4 22 200-221 21-42 (62)
417 4eyt_A Telomerase associated p 21.0 2E+02 0.0067 19.3 8.2 73 169-249 11-91 (129)
418 4bby_A Alkyldihydroxyacetoneph 20.0 73 0.0025 29.6 3.6 55 176-231 349-407 (658)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.2e-36 Score=244.97 Aligned_cols=175 Identities=18% Similarity=0.291 Sum_probs=143.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
+.+.++|||+|||+++|+++|+++|+.|| |.+|.++ + .+|+++|||||+|.+.++|++||+.++..++|+.|.|..+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 45688999999999999999999999996 5566654 4 4799999999999999999999999888999999999776
Q ss_pred chHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-C
Q 025001 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D 208 (259)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~ 208 (259)
....... ........++|||+|||+++|+++|+++|+.||.+. .|.++.+. +
T Consensus 90 ~~~~~~~--------------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~ 142 (196)
T 1l3k_A 90 VSREDSQ--------------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE-VIEIMTDRGS 142 (196)
T ss_dssp CC-------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE-EEEEEECTTT
T ss_pred cCccccc--------------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE-EEEEeecCCC
Confidence 5332100 011123567999999999999999999999999886 78898886 8
Q ss_pred CCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCCHHHHHHH
Q 025001 209 GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHEEMDEA 254 (259)
Q Consensus 209 g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~~~~~~~~ 254 (259)
|+++|||||+|.+.++|.+||..++..|+|+.|.|..+.+++....
T Consensus 143 g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 143 GKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-------
T ss_pred CCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHhcc
Confidence 9999999999999999999998899999999999999988865544
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.3e-36 Score=248.11 Aligned_cols=169 Identities=21% Similarity=0.252 Sum_probs=142.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
.+.++|||+|||+++||++|+++|++|| |++|.|+ + .+|+++|||||+|.+.++|++||+ +++..+.|+.|.+..+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3478999999999999999999999996 5567654 4 489999999999999999999997 6778899999998766
Q ss_pred chHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCC
Q 025001 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209 (259)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g 209 (259)
....... .....+|||+|||+++|+++|+++|++||.+. .|+|+.+. +
T Consensus 93 ~~~~~~~------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~~~i~~d~-~ 140 (213)
T 4f02_A 93 QRDPSLR------------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL-SCKVVCDE-N 140 (213)
T ss_dssp CCCTHHH------------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEET-T
T ss_pred ccccccc------------------------------ccccccceECCcccccHHHHHHHHHhhcCCeE-EEEeeccC-C
Confidence 4322110 12345899999999999999999999999886 78888875 4
Q ss_pred CCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHHHH
Q 025001 210 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDEA 254 (259)
Q Consensus 210 ~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~~~ 254 (259)
.++|||||+|.+.++|.+||+. ||..|+||.|.|..+.+++....
T Consensus 141 ~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~ 186 (213)
T 4f02_A 141 GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 186 (213)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHHHHH
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcccch
Confidence 5899999999999999999987 99999999999999977654433
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=228.65 Aligned_cols=160 Identities=22% Similarity=0.253 Sum_probs=139.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCCc-eEEEEe-cCCCCceeEEEEEeCCHHHHHHHH-HhccccCCCeEEEEEecchHH
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV-HKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVFRSKRQE 133 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~~-~~~g~~~G~afV~F~~~e~A~~Al-~~~~~~~~~r~i~v~~~~~~~ 133 (259)
++|||+|||+++|+++|+++|+.||. .++.++ +++|+++|||||+|.+.++|++|+ .+++..+.|+.|.|..+...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~- 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS- 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC-
Confidence 58999999999999999999999964 456654 678899999999999999999999 47888999999999765311
Q ss_pred HHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCc
Q 025001 134 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPT 212 (259)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~ 212 (259)
.........+|||+|||+++|+++|+++|++||.+. .+.++.+. +|.++
T Consensus 80 -----------------------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~ 129 (166)
T 3md3_A 80 -----------------------------QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSR 129 (166)
T ss_dssp -----------------------------CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEE-EEEEEECTTTCCEE
T ss_pred -----------------------------CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCee-EEEEEecCCCCCcc
Confidence 011234577999999999999999999999999886 78888885 89999
Q ss_pred eEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 213 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 213 G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
|||||+|.+.++|.+|++. |+..++|+.|.|..++
T Consensus 130 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 130 GYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999999986 9999999999999885
No 4
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.8e-35 Score=233.67 Aligned_cols=161 Identities=17% Similarity=0.290 Sum_probs=140.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecch
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~ 131 (259)
+.++|||+|||+++|+++|+++|+.|| +.++.++ + .+|+++|||||+|.+.++|++||+. +..++|+.|.|..+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 478999999999999999999999996 4556654 4 4899999999999999999999984 5679999999877654
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCC
Q 025001 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGR 210 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~ 210 (259)
.... ....+|||+|||+++|+++|+++|++||.+. .|.++.+. +|+
T Consensus 81 ~~~~--------------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~g~ 127 (167)
T 2cjk_A 81 RDEQ--------------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTII-DAQLMLDKDTGQ 127 (167)
T ss_dssp HHHH--------------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCS-EEECCCSSSSST
T ss_pred hhhc--------------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEE-EEEEEEcCCCCc
Confidence 3211 2356899999999999999999999999886 78888886 799
Q ss_pred CceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCCHH
Q 025001 211 PTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 249 (259)
Q Consensus 211 ~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~~~ 249 (259)
++|||||+|.+.++|.+|+++|+..|+||.|.|..+.++
T Consensus 128 ~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 128 SRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp TSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred cceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 999999999999999999998999999999999998754
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.4e-34 Score=225.76 Aligned_cols=159 Identities=17% Similarity=0.251 Sum_probs=139.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCc-eEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.++|||+|||+++|+++|+++|+.||. .++.++ + .+|+++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3689999999999999999999999974 456654 4 489999999999999999999997 78889999999997664
Q ss_pred hHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CC
Q 025001 131 RQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DG 209 (259)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g 209 (259)
.. .......+|||+|||+++|+++|+++|++||.+. .+.++.+. +|
T Consensus 82 ~~--------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~ 128 (168)
T 1b7f_A 82 PG--------------------------------GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTG 128 (168)
T ss_dssp CC--------------------------------SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEE-EEEEEECTTTC
T ss_pred CC--------------------------------cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEE-EEEEEEcCCCC
Confidence 11 1123567899999999999999999999999886 78888887 89
Q ss_pred CCceEEEEEEcCHHHHHHHHHh-CCCccCC--eEEEEEeC
Q 025001 210 RPTGEAFVEFANAEDSKAAMAK-DRMTLGS--RYIELFPS 246 (259)
Q Consensus 210 ~~~G~afV~F~~~~~A~~Al~~-~~~~l~g--r~i~V~~~ 246 (259)
+++|||||+|.+.++|.+|++. |+..+.| ++|.|..|
T Consensus 129 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 129 RPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999986 9999977 99999875
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.1e-33 Score=222.99 Aligned_cols=158 Identities=15% Similarity=0.235 Sum_probs=137.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCc-eEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
.++|||+|||+++|+++|+++|+.||. .++.++ ++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 579999999999999999999999964 456554 54 89999999999999999999997 788899999999966541
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCC
Q 025001 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGR 210 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~ 210 (259)
. .......+|||+|||+++|+++|+++|++||.+. .+.++.+. +|+
T Consensus 82 ~--------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~g~ 128 (167)
T 1fxl_A 82 S--------------------------------SASIRDANLYVSGLPKTMTQKELEQLFSQYGRII-TSRILVDQVTGV 128 (167)
T ss_dssp C--------------------------------CGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCC
T ss_pred C--------------------------------cccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEe-EEEEEecCCCCC
Confidence 1 1123457899999999999999999999999886 78888877 899
Q ss_pred CceEEEEEEcCHHHHHHHHHh-CCCccCCeE--EEEEeC
Q 025001 211 PTGEAFVEFANAEDSKAAMAK-DRMTLGSRY--IELFPS 246 (259)
Q Consensus 211 ~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~--i~V~~~ 246 (259)
++|||||+|.+.++|.+|++. ||..++|+. |.|..|
T Consensus 129 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 129 SRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999987 999999976 777654
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.7e-33 Score=223.74 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=134.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCc-eEEEEe-cC-CC--CceeEEEEEeCCHHHHHHHHH-hccccCC---CeEEE
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV-HK-NN--KFTGEAFCVLGYPLQVDFALQ-RNRQNMG---RRYVE 125 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~~-~~-~g--~~~G~afV~F~~~e~A~~Al~-~~~~~~~---~r~i~ 125 (259)
+.++|||+|||+++|+++|+++|++||. .++.++ ++ +| +++|||||+|.+.++|++|++ +++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4789999999999999999999999964 456554 44 43 899999999999999999997 6665543 56666
Q ss_pred EEecchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEee
Q 025001 126 VFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205 (259)
Q Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~ 205 (259)
+..+... ........+|||+|||+++|+++|+++|++||.+. .|.++.
T Consensus 82 ~~~~~~~-------------------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~v~~~~ 129 (175)
T 3nmr_A 82 MKPADSE-------------------------------KNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE-ECRILR 129 (175)
T ss_dssp EEECGGG-------------------------------CCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEE
T ss_pred Ecccccc-------------------------------ccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEE-EEEEEE
Confidence 6554311 01124577899999999999999999999999886 899999
Q ss_pred CCCCCCceEEEEEEcCHHHHHHHHHh-CCCccC---CeEEEEEeCC
Q 025001 206 NSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLG---SRYIELFPSS 247 (259)
Q Consensus 206 ~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~---gr~i~V~~~~ 247 (259)
+.+|+++|||||+|.+.++|.+|++. ||..+. +|+|.|..+.
T Consensus 130 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 130 GPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999999999999999977 987765 4999998863
No 8
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.4e-34 Score=228.31 Aligned_cols=159 Identities=19% Similarity=0.269 Sum_probs=135.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCC----Cce-----EEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEE
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGL----DIV-----DVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVE 125 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~----~iv-----~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~ 125 (259)
+.++|||+|||+++|+++|+++|++| +++ .+. ....++++|||||+|.+.++|++|+.+++..+.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~-~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL-AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE-EEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCcee-eeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceee
Confidence 47899999999999999999999998 421 111 11234568999999999999999998889999999999
Q ss_pred EEecchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEee
Q 025001 126 VFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM 205 (259)
Q Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~ 205 (259)
|..+... .......+|||+|||+++|+++|+++|++||.+. .|.++.
T Consensus 82 v~~~~~~--------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~ 128 (172)
T 2g4b_A 82 IRRPHDY--------------------------------QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK-AFNLVK 128 (172)
T ss_dssp EECCSSC--------------------------------CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE-EEEEEE
T ss_pred ecCCccc--------------------------------CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce-EEEEEe
Confidence 9654310 1123467899999999999999999999999886 899998
Q ss_pred CC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 206 NS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 206 ~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
++ +|+++|||||+|.+.++|.+|++. |+..|+||.|.|..|+
T Consensus 129 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 129 DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 86 899999999999999999999987 9999999999999875
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=8e-34 Score=233.26 Aligned_cols=173 Identities=20% Similarity=0.306 Sum_probs=141.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.++|||+|||+++|+++|+++|+.|| |.+|.++ +. +|+++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 478999999999999999999999996 5567664 43 89999999999999999999998 78889999999997665
Q ss_pred hHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CC
Q 025001 131 RQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DG 209 (259)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g 209 (259)
............. ......++|||+|||+++|+++|+++|++||.+. .|.++.+. +|
T Consensus 107 ~~~~~~~~~~~~~---------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~g 164 (216)
T 2qfj_A 107 NIGQAQPIIDQLA---------------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK-SATLARDPTTG 164 (216)
T ss_dssp CCGGGHHHHHHHH---------------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEE-EEEEEECTTTC
T ss_pred Cccccchhhhhhh---------------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCee-EEEEEecCCCC
Confidence 3321111100000 0113467999999999999999999999999886 78898886 89
Q ss_pred CCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHH
Q 025001 210 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 249 (259)
Q Consensus 210 ~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~ 249 (259)
+++|||||+|.+.++|.+|++. |+..|+||.|.|..+.+.
T Consensus 165 ~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 165 KHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred CcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 9999999999999999999987 999999999999988654
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.8e-34 Score=229.89 Aligned_cols=162 Identities=14% Similarity=0.214 Sum_probs=137.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
.+.+.++|||+|||+++|+++|+++|+.++ +..+.+. ..+|+++|||||+|.+.++|++||++++..+.|+.|.|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 356688999999999999999999999885 3333333 35789999999999999999999998999999999999766
Q ss_pred chHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCC
Q 025001 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG 209 (259)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g 209 (259)
.... ........+|||+|||+++|+++|+++|++||.+ .++ ..+|
T Consensus 89 ~~~~------------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v----~~~-~~~~ 133 (175)
T 1fje_B 89 KGRD------------------------------SKKVRAARTLLAKNLSFNITEDELKEVFEDALEI----RLV-SQDG 133 (175)
T ss_dssp CCSS------------------------------CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEE----EEE-CSSS
T ss_pred CCcc------------------------------ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeE----EEe-cCCC
Confidence 4210 0122467899999999999999999999999865 333 6689
Q ss_pred CCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCH
Q 025001 210 RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248 (259)
Q Consensus 210 ~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~ 248 (259)
.++|||||+|.+.++|.+|++. |+..|+||.|.|.++.+
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 9999999999999999999997 99999999999999865
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=4.5e-33 Score=225.81 Aligned_cols=182 Identities=18% Similarity=0.211 Sum_probs=139.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCC----CceE----EEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEE
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGL----DIVD----VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 126 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~----~iv~----v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v 126 (259)
..++|||+|||+++|+++|+++|+.| +++. .+.....++++|||||+|.+.++|++||.+++..++|+.|.|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI 82 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEE
Confidence 36899999999999999999999988 3210 111123466789999999999999999988899999999999
Q ss_pred EecchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeC
Q 025001 127 FRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN 206 (259)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~ 206 (259)
..+..... ..+........ .............++|||+|||+++|+++|+++|++||.+. .|.+..+
T Consensus 83 ~~~~~~~~----------~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~-~~~~~~~ 149 (198)
T 2yh0_A 83 RRPHDYQP----------LPGMSENPSVY--VPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK-AFNLVKD 149 (198)
T ss_dssp ECCCCCCC----------CCCSSSCSSCC--CTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE-EEEEEEC
T ss_pred eCCCCCCC----------CCCCcCCCcCC--CCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc-EEEEeec
Confidence 76642110 00000000000 00001111235678999999999999999999999999885 7899988
Q ss_pred C-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHH
Q 025001 207 S-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 249 (259)
Q Consensus 207 ~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~ 249 (259)
. +|.++|||||+|.+.++|.+|++. |+..|+|+.|.|..+.+.
T Consensus 150 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 150 SATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp TTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 7 899999999999999999999987 999999999999998653
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=8.2e-32 Score=230.72 Aligned_cols=166 Identities=16% Similarity=0.180 Sum_probs=144.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCc-eEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
.++|||+|||+++|+++|+++|+.||. ..+.++ + .+|+++|||||+|.+.++|.+|+. +++..++|+.|.|..+..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 579999999999999999999999964 456544 4 489999999999999999999995 788899999999977753
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCC-CHHHHHHHhccCCCccceEEEeeCCCCC
Q 025001 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSA-GKDDIMDFFKDFVLSEDSIHITMNSDGR 210 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~-te~dl~~~F~~~g~~~~~v~i~~~~~g~ 210 (259)
... ........+|||+|||+++ |+++|+++|+.||.+. .|.|+.+.+|+
T Consensus 175 ~~~-----------------------------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~-~v~i~~~~~g~ 224 (284)
T 3smz_A 175 GQL-----------------------------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPT-FCQLACGQDGQ 224 (284)
T ss_dssp GGC-----------------------------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCS-EEEEEECSSCC
T ss_pred CCC-----------------------------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeE-EEEEEECCCCC
Confidence 211 0122456889999999995 9999999999999886 89999999999
Q ss_pred CceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHH
Q 025001 211 PTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEM 251 (259)
Q Consensus 211 ~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~ 251 (259)
++|+|||+|.+.++|.+|+.. ||..|+|+.|.|..+.+.+.
T Consensus 225 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 225 LKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred cccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999999999999999999987 99999999999999977654
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=1.3e-31 Score=229.53 Aligned_cols=153 Identities=20% Similarity=0.303 Sum_probs=137.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchHH
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQE 133 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~~ 133 (259)
+.++|||+|||+++|+++|+++|+.||++.+.+ ++++|||||+|.+.++|++|+. +++..+.|+.|.|..+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~---- 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ---- 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec----
Confidence 368999999999999999999999999666766 6778999999999999999997 6888999999999543
Q ss_pred HHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCc
Q 025001 134 YYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPT 212 (259)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~ 212 (259)
....+|||+|||+++|+++|+++|+.||.+. .+.++.+. +|+++
T Consensus 93 ----------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~ 137 (284)
T 3smz_A 93 ----------------------------------PTDALLCVANLPPSLTQQQFEELVRPFGSLE-RCFLVYSERTGQSK 137 (284)
T ss_dssp ----------------------------------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEE
T ss_pred ----------------------------------CCCCEEEEcCCCCcCCHHHHHHHHHhcCCee-EEEEEeeCCCCccc
Confidence 2346899999999999999999999999886 78888776 89999
Q ss_pred eEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHH
Q 025001 213 GEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 250 (259)
Q Consensus 213 G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~ 250 (259)
|||||+|.+.++|.+|++. |+..++|+.|.|..+.+..
T Consensus 138 g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 138 GYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 9999999999999999966 9999999999999987654
No 14
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.3e-31 Score=230.33 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=131.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
.+.+.++|||+|||+++|+++|+++|+.|| |..|.++ +..+ ++|||||+|.+.++|++||++++..++|+.|.|..+
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 356689999999999999999999999996 5557665 4444 589999999999999999998889999999998543
Q ss_pred chHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCC-CccceEEEeeCCC
Q 025001 130 KRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSD 208 (259)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g-~~~~~v~i~~~~~ 208 (259)
...+|||+|||+++|+++|+++|+.|| .+. .|.++.+..
T Consensus 116 ---------------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~-~v~i~~~~~ 155 (292)
T 2ghp_A 116 ---------------------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVAL-SIRLPSLRF 155 (292)
T ss_dssp ---------------------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCC-EEECC----
T ss_pred ---------------------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeE-EEEEEeCCC
Confidence 356899999999999999999999999 775 899998888
Q ss_pred CCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHH
Q 025001 209 GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEE 250 (259)
Q Consensus 209 g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~ 250 (259)
|.++|||||+|.+.++|.+|++. |+..|+|+.|.|..+.+..
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 99999999999999999999995 9999999999999886554
No 15
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=3.5e-31 Score=216.82 Aligned_cols=185 Identities=15% Similarity=0.179 Sum_probs=133.6
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 55 PFPVVRLRGLP-FDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 55 ~~~~vfV~nLp-~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
++++|||+||| +++|+++|+++|+.|| |.+|.++.. ++|||||+|.+.++|++||+ +++..+.|+.|.|..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 37899999999 8999999999999996 556766532 46999999999999999997 789999999999987643
Q ss_pred HHHHHHHhhhccccCCCCCC-CC--CCccCCCC-----CCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCcc-ceEE
Q 025001 132 QEYYKAIANEVSDVRGGSPH-RS--IPRAKSHD-----EGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSE-DSIH 202 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~-----~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~-~~v~ 202 (259)
.... ........ .+.+. .. ........ .......+..+|||+|||+++|+++|+++|++||.+. ..|+
T Consensus 80 ~~~~--p~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 80 PAIM--PGQSYGLE-DGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp SCCC--CCSCCBCT-TSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred CccC--CCcccccc-cCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 2110 00000000 00000 00 00000000 0001123567899999999999999999999999762 3788
Q ss_pred EeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCe----EEEEEeC
Q 025001 203 ITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSR----YIELFPS 246 (259)
Q Consensus 203 i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr----~i~V~~~ 246 (259)
+..+. |.++|||||+|.+.++|.+||.. |+..|.|+ ++.|+++
T Consensus 157 ~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 87765 56679999999999999999987 99999887 5777654
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=7.7e-31 Score=224.42 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=137.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhcCCCc-eEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVA----EFFHGLDI-VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEV 126 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~----~~F~~~~i-v~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v 126 (259)
..+.++|||+|||+++|+++|+ ++|+.||. .+|.+. .+|+++|||||+|.+.++|++||+ +++..+.|+.|.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVS-RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc-CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 3458899999999999999977 89999964 456555 488999999999999999999995 7888899999999
Q ss_pred EecchHHHH-HHHhhh---------c----c-------ccCC--C-------CCCC------------------------
Q 025001 127 FRSKRQEYY-KAIANE---------V----S-------DVRG--G-------SPHR------------------------ 152 (259)
Q Consensus 127 ~~~~~~~~~-~~~~~~---------~----~-------~~~~--~-------~~~~------------------------ 152 (259)
..+...... ...... . . .... . .+..
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 766432210 000000 0 0 0000 0 0000
Q ss_pred CCCc---cCC--C--------------------CCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC
Q 025001 153 SIPR---AKS--H--------------------DEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS 207 (259)
Q Consensus 153 ~~~~---~~~--~--------------------~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~ 207 (259)
..+. ... . ..........++|||+|||+++|+++|+++|+.||.+. .|.++.+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~-~v~~~~~~ 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK-EVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE-EEEEecCC
Confidence 0000 000 0 00001223568899999999999999999999999886 78888543
Q ss_pred CCCCceEEEEEEcCHHHHHHHHHh-CCCccC-CeEEEEEeCC
Q 025001 208 DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG-SRYIELFPSS 247 (259)
Q Consensus 208 ~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~-gr~i~V~~~~ 247 (259)
+|||||+|.+.++|.+|++. |+..|+ |+.|.|..++
T Consensus 244 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 58999999999999999987 999999 9999999875
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=4.6e-31 Score=223.85 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=135.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
..+.++|||+|||+++|+++|+++|+.|| |..|.+. +++|||||+|.+.++|++|+. +++..++|+.|.|..+.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 45578999999999999999999999996 4556664 457999999999999999997 78889999999996653
Q ss_pred hHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCC
Q 025001 131 RQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGR 210 (259)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~ 210 (259)
+..+|||+|||+++|+++|+++|+.||.+. .|.++.+.+|+
T Consensus 95 --------------------------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~ 135 (261)
T 3sde_A 95 --------------------------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVE-KAVVVVDDRGR 135 (261)
T ss_dssp --------------------------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEETTSC
T ss_pred --------------------------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeE-EEEeeeCCCCC
Confidence 356899999999999999999999999886 78999889999
Q ss_pred CceEEEEEEcCHHHHHHHHHh--CCCccC---CeEEEEEeCCHH
Q 025001 211 PTGEAFVEFANAEDSKAAMAK--DRMTLG---SRYIELFPSSHE 249 (259)
Q Consensus 211 ~~G~afV~F~~~~~A~~Al~~--~~~~l~---gr~i~V~~~~~~ 249 (259)
++|||||+|.+.++|.+||.. ++..+. +|+|.|.++...
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999999999999999987 555555 999999988654
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.9e-31 Score=229.26 Aligned_cols=169 Identities=15% Similarity=0.192 Sum_probs=137.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ce-EEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IV-DVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv-~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
..++|||+|||+++|+++|+++|+.|| .+ .+.+. +..|+++|||||+|.+.++|.+|+. +++..++|+.|.|..+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 478999999999999999999999997 54 46554 5678899999999999999999998 88899999999997765
Q ss_pred hHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCC-CCHHHHHHHhccCCCccceEEEeeCCC-
Q 025001 131 RQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFS-AGKDDIMDFFKDFVLSEDSIHITMNSD- 208 (259)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~-~te~dl~~~F~~~g~~~~~v~i~~~~~- 208 (259)
....... .........+|||+|||++ +|+++|+++|++||.+. .|.++.+..
T Consensus 196 ~~~~~~~-------------------------~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~ 249 (292)
T 2ghp_A 196 PLEKSKR-------------------------TDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE-KINIPAGQKE 249 (292)
T ss_dssp CC----------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE-EEECCSCCC-
T ss_pred CCccccc-------------------------ccccCCCCceEEEECCCcccCCHHHHHHHHhccCCee-EEEEEecCCc
Confidence 3221000 0012246789999999999 99999999999999886 789988886
Q ss_pred -CCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCCHH
Q 025001 209 -GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSHE 249 (259)
Q Consensus 209 -g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~~~ 249 (259)
|.++|||||+|.+.++|.+|+.+|+..|+||.|.|.++.++
T Consensus 250 tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 250 HSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp --CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred CCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecCC
Confidence 99999999999999999999933999999999999998754
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=3.4e-30 Score=214.38 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=135.0
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPF-DCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~-~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
..++++|||+|||+ ++|+++|+++|+.|| |.+|.++... +|||||+|.+.++|++||+ +++..+.|+.|.|..+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 34578999999999 999999999999996 5556665322 7899999999999999997 8888999999999776
Q ss_pred chHHHHHHHhhhc-----cccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCC-CccceEEE
Q 025001 130 KRQEYYKAIANEV-----SDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHI 203 (259)
Q Consensus 130 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g-~~~~~v~i 203 (259)
............. .........+.... ..........+.++|||+|||+++|+++|+++|++|| .+. .|.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~-~v~i 184 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP--GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK-GFKF 184 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCST--TSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEE-EEEE
T ss_pred cCccccCccccccccccccccccCcccccCCc--cccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCee-EEEE
Confidence 4321100000000 00000000000000 0000001124578999999999999999999999999 775 7777
Q ss_pred eeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccC-CeEEEEEeCCH
Q 025001 204 TMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLG-SRYIELFPSSH 248 (259)
Q Consensus 204 ~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~-gr~i~V~~~~~ 248 (259)
..+ ++|||||+|.+.++|.+|++. |+..++ |+.|.|..+.+
T Consensus 185 ~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 185 FQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 543 468999999999999999986 999999 99999998864
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=4.3e-30 Score=208.65 Aligned_cols=184 Identities=15% Similarity=0.182 Sum_probs=133.9
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchH
Q 025001 56 FPVVRLRGLPF-DCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQ 132 (259)
Q Consensus 56 ~~~vfV~nLp~-~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~ 132 (259)
+++|||+|||+ ++|+++|+++|+.|| |.+|.+.... +|||||+|.+.++|++|++ +++..++|+.|.|..+...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 57999999999 999999999999996 5567665322 7899999999999999997 8888999999999776532
Q ss_pred HHHHHHhhh--ccccC--CCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCC-CccceEEEeeCC
Q 025001 133 EYYKAIANE--VSDVR--GGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNS 207 (259)
Q Consensus 133 ~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g-~~~~~v~i~~~~ 207 (259)
......... ....+ ...+...... ...........+..+|||+|||+++|+++|+++|++|| .+. .|.+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~-~v~i~~~- 156 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKK-PGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK-GFKFFQK- 156 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSS-CCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCC-EEEESST-
T ss_pred CcCCCCcCCccccccccccCCchhhccC-ccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCce-EEEEEeC-
Confidence 110000000 00000 0000000000 00000011224578999999999999999999999999 775 7888653
Q ss_pred CCCCceEEEEEEcCHHHHHHHHHh-CCCccC-CeEEEEEeCCH
Q 025001 208 DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG-SRYIELFPSSH 248 (259)
Q Consensus 208 ~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~-gr~i~V~~~~~ 248 (259)
.+|+|||+|.+.++|.+|++. |+..++ |+.|.|..+.+
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 378999999999999999986 999999 99999998754
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=8.2e-24 Score=165.81 Aligned_cols=136 Identities=14% Similarity=0.201 Sum_probs=101.6
Q ss_pred CceeEEEEEeCCHHHHHHHHHh-ccc-cCCCeEEEEEecchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCc
Q 025001 93 KFTGEAFCVLGYPLQVDFALQR-NRQ-NMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHT 170 (259)
Q Consensus 93 ~~~G~afV~F~~~e~A~~Al~~-~~~-~~~~r~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
+++|||||+|.+.++|++|++. ++. .+.+... +....... .... ..............
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~-~~~~~~~~---------~~~~----------~~~~~~~~~~~~~~ 70 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWT-YDDATKTF---------TVTE----------GSHHHHHHMDVEGM 70 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEE-EETTTTEE---------EEEC----------CCCCSSCCCCCCBC
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCccc-ccCccccc---------cccc----------cccccccccCCCCC
Confidence 6899999999999999999974 333 3344332 21111000 0000 00000111223457
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCH
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~ 248 (259)
.+|||+|||+++|+++|+++|+.||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|+|+.|.|..+.+
T Consensus 71 ~~l~v~nl~~~~~~~~l~~~F~~~G~v~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 71 TSLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEE-EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 8999999999999999999999999886 78998886 899999999999999999999987 99999999999999865
Q ss_pred H
Q 025001 249 E 249 (259)
Q Consensus 249 ~ 249 (259)
.
T Consensus 150 ~ 150 (158)
T 2kn4_A 150 G 150 (158)
T ss_dssp S
T ss_pred C
Confidence 3
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.6e-22 Score=150.31 Aligned_cols=108 Identities=15% Similarity=0.086 Sum_probs=66.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchH
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQ 132 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~ 132 (259)
..++|||+|||+++|+++|+++|+.|| |.+|.|+...+.++|||||+|.+.++|++||+ +++..++|+.|.|..+...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 356999999999999999999999996 55676664456689999999999999999997 7888999999999766421
Q ss_pred HHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHH
Q 025001 133 EYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDD 186 (259)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~d 186 (259)
.... ...........+|||+|||+++|++.
T Consensus 84 ~~~~------------------------~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KERE------------------------AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------------------------------
T ss_pred cccc------------------------cccccccCCCCceEeCCCCCCccccc
Confidence 1000 00001113345799999999999863
No 23
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=152.30 Aligned_cols=91 Identities=41% Similarity=0.680 Sum_probs=83.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCc---cceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLS---EDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~---~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~ 244 (259)
....+|||+|||+++|++||+++|++||.+ ...|+|+.+.+|+++|||||+|.+.++|.+||+.|++.|+||.|+|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 356799999999999999999999999965 24799999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHcC
Q 025001 245 PSSHEEMDEALSRG 258 (259)
Q Consensus 245 ~~~~~~~~~~~~~~ 258 (259)
.+++++|.+++.++
T Consensus 101 ~a~~~e~~~~~~~~ 114 (123)
T 2dha_A 101 RSTAAEVQQVLNRF 114 (123)
T ss_dssp EECHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhc
Confidence 99999999987654
No 24
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.87 E-value=8.6e-22 Score=147.01 Aligned_cols=91 Identities=38% Similarity=0.697 Sum_probs=84.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCC---ccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~---~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~ 244 (259)
...++|||+|||+++|+++|+++|+.||. +. .|+|+.+..|+++|||||+|.+.++|.+||++|+..|+||.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~-~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVA-GVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGG-GEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCce-eEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45789999999999999999999999997 54 899999989999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHcCC
Q 025001 245 PSSHEEMDEALSRGR 259 (259)
Q Consensus 245 ~~~~~~~~~~~~~~r 259 (259)
+++.+++.+++++++
T Consensus 94 ~a~~~~~~~~~~~~~ 108 (118)
T 2db1_A 94 KSHRTEMDWVLKHSG 108 (118)
T ss_dssp EECHHHHHHHHHTTS
T ss_pred ECCHHHHHHHHHHhC
Confidence 999999998887653
No 25
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.86 E-value=1.4e-21 Score=149.25 Aligned_cols=90 Identities=39% Similarity=0.717 Sum_probs=84.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCC---ccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~---~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~ 244 (259)
....+|||+|||+++|++||+++|++||. +. .|+|+.++.|+++|||||+|.+.++|++||++|+..|+||.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~-~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAA-GVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSST-TEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCcee-EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 45789999999999999999999999998 54 799999989999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHcC
Q 025001 245 PSSHEEMDEALSRG 258 (259)
Q Consensus 245 ~~~~~~~~~~~~~~ 258 (259)
.++++++.+++++.
T Consensus 121 ~a~~~e~~~~~~~~ 134 (136)
T 2hgl_A 121 KSHRTEMDWVLKHS 134 (136)
T ss_dssp ECCHHHHHHHHTTS
T ss_pred ECChHHHHHHHhhc
Confidence 99999999887764
No 26
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=1.1e-21 Score=152.40 Aligned_cols=136 Identities=18% Similarity=0.158 Sum_probs=104.9
Q ss_pred CCCceeEEEEEeCCHHHHHHHHH-h-ccccCCCeEEEEEecchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCC
Q 025001 91 NNKFTGEAFCVLGYPLQVDFALQ-R-NRQNMGRRYVEVFRSKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAV 168 (259)
Q Consensus 91 ~g~~~G~afV~F~~~e~A~~Al~-~-~~~~~~~r~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
....+|+++|+|.+.++|++|++ + ++..++| .|.+..+..... .... .. ............
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~--------~~~~-~~-------~~~~~~~~~~~~ 71 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFT--------VTEG-SH-------HHHHHMHRDSCP 71 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEE--------EECS-SS-------SCCCCSCSSSST
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccc--------cccc-cc-------cccccccccCCC
Confidence 34678999999999999999996 6 7788999 888865432100 0000 00 000001112335
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
..++|||+|||+++|+++|+++|++||.+. .|.++.+ ++|||||+|.+.++|.+||.. |+..|+|+.|.|..+.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLR-SVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEE-EEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEE-EEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 678999999999999999999999999886 7888866 689999999999999999986 9999999999999886
Q ss_pred H
Q 025001 248 H 248 (259)
Q Consensus 248 ~ 248 (259)
+
T Consensus 147 ~ 147 (150)
T 2i2y_A 147 G 147 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.4e-21 Score=141.59 Aligned_cols=86 Identities=28% Similarity=0.545 Sum_probs=78.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
....+|||+|||+++|++||+++|++| .+. .|.|+.+++|+++|||||+|.+.++|.+||++|+..|+||.|.|..++
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVD-AVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCC-EEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-Cee-EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 456799999999999999999999999 443 799999999999999999999999999999779999999999999999
Q ss_pred HHHHHHHH
Q 025001 248 HEEMDEAL 255 (259)
Q Consensus 248 ~~~~~~~~ 255 (259)
+.++..+.
T Consensus 92 ~~~~~~~~ 99 (109)
T 2dnn_A 92 ERQWVAAG 99 (109)
T ss_dssp HHHHHHHH
T ss_pred ccchhhcC
Confidence 99887654
No 28
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=143.18 Aligned_cols=91 Identities=31% Similarity=0.661 Sum_probs=84.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCC---ccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVL---SEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 243 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~---~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V 243 (259)
.....+|||+|||+++|+++|+++|+.||. +. .|.|+.+..|+++|||||+|.+.++|.+||++|+..|+||.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~-~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN-GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTT-TEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcc-eEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 356789999999999999999999999997 64 79999998899999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHcC
Q 025001 244 FPSSHEEMDEALSRG 258 (259)
Q Consensus 244 ~~~~~~~~~~~~~~~ 258 (259)
..++++++.+.++++
T Consensus 87 ~~a~~~~~~~~~~~~ 101 (107)
T 2lmi_A 87 YEINNEDVDALMKSL 101 (107)
T ss_dssp EECCHHHHHHHHHTT
T ss_pred EECCHHHHHHHHHhh
Confidence 999999999888765
No 29
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.2e-21 Score=139.44 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
..+.+|||+|||+++|+++|+++|++||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. ||..|+||.|.|..
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVE-SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999886 89999887 799999999999999999999986 99999999999998
Q ss_pred CCH
Q 025001 246 SSH 248 (259)
Q Consensus 246 ~~~ 248 (259)
+.|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 864
No 30
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7e-21 Score=141.16 Aligned_cols=89 Identities=24% Similarity=0.442 Sum_probs=82.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
...++|||+|||+++|+++|+++|+.||.+...|.|+.+.+|+++|||||+|.+.++|.+||+.|+..|+||.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 56789999999999999999999999998833799999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHH
Q 025001 248 HEEMDEALS 256 (259)
Q Consensus 248 ~~~~~~~~~ 256 (259)
++++.....
T Consensus 93 ~~~~~~~~~ 101 (114)
T 2cpy_A 93 LEDMREIEK 101 (114)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887654
No 31
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=140.96 Aligned_cols=84 Identities=33% Similarity=0.498 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecchH
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKRQ 132 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~~ 132 (259)
.+.++|||+|||+++|++||+++|++|+|.+|.|+ +++|+++|||||+|.+.++|++||.+++..|+||.|.|..+...
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 34679999999999999999999999988888765 67899999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 025001 133 EYYKA 137 (259)
Q Consensus 133 ~~~~~ 137 (259)
+|..+
T Consensus 94 ~~~~~ 98 (109)
T 2dnn_A 94 QWVAA 98 (109)
T ss_dssp HHHHH
T ss_pred chhhc
Confidence 88654
No 32
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7e-22 Score=144.18 Aligned_cols=88 Identities=39% Similarity=0.741 Sum_probs=80.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
....+|||+|||+++|+++|+++|++||.+...|.|+.+.+|+++|||||+|.+.++|.+||+.|+..|+||.|.|.+++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 56789999999999999999999999998864488888889999999999999999999999889999999999999999
Q ss_pred HHHHHHHH
Q 025001 248 HEEMDEAL 255 (259)
Q Consensus 248 ~~~~~~~~ 255 (259)
++++.+..
T Consensus 93 ~~~~~~~~ 100 (104)
T 1wg5_A 93 RAEVRTSG 100 (104)
T ss_dssp TTTSCCSS
T ss_pred HHHHHHhc
Confidence 88765443
No 33
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.84 E-value=2.2e-21 Score=145.92 Aligned_cols=85 Identities=41% Similarity=0.795 Sum_probs=78.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
....+|||+|||+++|++||+++|++|+++...|.|+.+++|+++|||||+|.+.++|.+||+.++..|+||.|.|.+++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 56788999999999999999999999976533689999989999999999999999999999998899999999999999
Q ss_pred HHHHH
Q 025001 248 HEEMD 252 (259)
Q Consensus 248 ~~~~~ 252 (259)
++++.
T Consensus 120 ~~e~~ 124 (126)
T 2hgm_A 120 QEEVR 124 (126)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98874
No 34
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.6e-21 Score=143.05 Aligned_cols=90 Identities=38% Similarity=0.666 Sum_probs=81.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
.....+|||+|||+++|+++|+++|+.||.+...+.+..+.+|+++|||||+|.+.++|.+||++|+..|+||.|.|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34668999999999999999999999999886446777777999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHH
Q 025001 247 SHEEMDEALS 256 (259)
Q Consensus 247 ~~~~~~~~~~ 256 (259)
+++++.+...
T Consensus 102 ~~~~~~~~~~ 111 (124)
T 1wel_A 102 TKKGMLEKID 111 (124)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999876543
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=136.53 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=76.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.+.++|||+|||+++|+++|+++|++||.+. .|.|+.|+ +|+++|||||+|.+.++|.+||+. |+..|+||.|.|..
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~-~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVE-EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCee-EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999886 78999887 699999999999999999999987 99999999999999
Q ss_pred CCHHHH
Q 025001 246 SSHEEM 251 (259)
Q Consensus 246 ~~~~~~ 251 (259)
+.....
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 976543
No 36
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=136.90 Aligned_cols=78 Identities=31% Similarity=0.489 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEE-ecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~-~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
+...++|||+|||+++||+||+++|++|++++|.| .+++|+++|||||+|.+.++|++||++++..|++|.|.|..++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 44578999999999999999999999999888765 4679999999999999999999999999999999999998765
No 37
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=140.31 Aligned_cols=85 Identities=32% Similarity=0.563 Sum_probs=76.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCc-----eEEEE-ecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDI-----VDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~i-----v~v~~-~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
.++|||+|||+++|++||++||++|+. ..|.| .+.+|+++|||||+|.+.++|++||++++..|++|.|+|..+
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRS 102 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence 679999999999999999999999964 35655 467999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhh
Q 025001 130 KRQEYYKAIAN 140 (259)
Q Consensus 130 ~~~~~~~~~~~ 140 (259)
+.+++......
T Consensus 103 ~~~e~~~~~~~ 113 (123)
T 2dha_A 103 TAAEVQQVLNR 113 (123)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 99888776654
No 38
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-21 Score=137.32 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=71.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCC-CccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh--CCCccCCeEEEEEe
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK--DRMTLGSRYIELFP 245 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g-~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~--~~~~l~gr~i~V~~ 245 (259)
+++|||+|||+++|+++|+++|++|| .+. .|+|+.++ +|+++|||||+|.+.++|.+||+. |+..|+||.|.|..
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~-~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAR-EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCS-BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeE-EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 36899999999999999999999999 564 78998887 799999999999999999999985 56789999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.++
T Consensus 80 a~~~ 83 (91)
T 2lxi_A 80 SDPK 83 (91)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8654
No 39
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=136.76 Aligned_cols=80 Identities=45% Similarity=0.720 Sum_probs=74.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
....+|||+|||+++|++||+++|++||++ .|+|+.+++|+++|||||+|.+.++|++||++|+..|+||.|+|.+++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS--EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 567899999999999999999999999955 799999999999999999999999999999779999999999999886
Q ss_pred HH
Q 025001 248 HE 249 (259)
Q Consensus 248 ~~ 249 (259)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 40
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.83 E-value=1e-20 Score=142.26 Aligned_cols=82 Identities=39% Similarity=0.727 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCce--EEEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV--DVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv--~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
+.+.++|||+|||+++||++|+++|++|+|+ +|.|+ +++|+++|||||+|.+.++|++||++++..|+||.|.|..+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 4457899999999999999999999999988 67654 66799999999999999999999998888999999999998
Q ss_pred chHHH
Q 025001 130 KRQEY 134 (259)
Q Consensus 130 ~~~~~ 134 (259)
+.+++
T Consensus 119 ~~~e~ 123 (126)
T 2hgm_A 119 SQEEV 123 (126)
T ss_dssp CHHHH
T ss_pred CHHHh
Confidence 87664
No 41
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=133.34 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCc-cceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCC----ccCCeE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLS-EDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRM----TLGSRY 240 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~-~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~----~l~gr~ 240 (259)
..-.+|||+|||+++|+++|+++|++||.+ ...|++++|+ +|+++|||||+|.+.++|.+||+. |+. .|+||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 456789999999999999999999999942 2479999887 799999999999999999999987 876 589999
Q ss_pred EEEEeCC
Q 025001 241 IELFPSS 247 (259)
Q Consensus 241 i~V~~~~ 247 (259)
|.|.++.
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999885
No 42
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=1.4e-19 Score=134.91 Aligned_cols=87 Identities=38% Similarity=0.622 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCc----eEEEE-ecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDI----VDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~i----v~v~~-~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~ 127 (259)
..+.++|||+|||+++|+++|+++|+.|+. ..|.| .+++|+++|||||+|.+.++|++||++++..|++|.|.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 345789999999999999999999999975 45665 4677999999999999999999999999999999999999
Q ss_pred ecchHHHHHHHh
Q 025001 128 RSKRQEYYKAIA 139 (259)
Q Consensus 128 ~~~~~~~~~~~~ 139 (259)
.+...++.....
T Consensus 94 ~a~~~~~~~~~~ 105 (118)
T 2db1_A 94 KSHRTEMDWVLK 105 (118)
T ss_dssp EECHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 998887655444
No 43
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=134.38 Aligned_cols=86 Identities=16% Similarity=0.242 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE--EEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD--VLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~--v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
+.+.++|||+|||+++|+++|+++|+.|+++. |.|+ +++|+++|||||+|.+.++|++||+.++..|+||.|.|..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 45578999999999999999999999998773 7654 67999999999999999999999999888999999999999
Q ss_pred chHHHHHHH
Q 025001 130 KRQEYYKAI 138 (259)
Q Consensus 130 ~~~~~~~~~ 138 (259)
..++.....
T Consensus 92 ~~~~~~~~~ 100 (114)
T 2cpy_A 92 TLEDMREIE 100 (114)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 877765443
No 44
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=1.3e-19 Score=138.20 Aligned_cols=86 Identities=40% Similarity=0.658 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCc----eEEEE-ecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDI----VDVLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~i----v~v~~-~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~ 127 (259)
+.+.++|||+|||+++|+++|+++|++|+. .+|.+ .++.|+++|||||+|.+.++|++||++++..+++|.|.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 445789999999999999999999999975 45665 4667999999999999999999999988999999999999
Q ss_pred ecchHHHHHHH
Q 025001 128 RSKRQEYYKAI 138 (259)
Q Consensus 128 ~~~~~~~~~~~ 138 (259)
.++..++....
T Consensus 121 ~a~~~e~~~~~ 131 (136)
T 2hgl_A 121 KSHRTEMDWVL 131 (136)
T ss_dssp ECCHHHHHHHH
T ss_pred ECChHHHHHHH
Confidence 99888765443
No 45
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=1.5e-19 Score=127.27 Aligned_cols=78 Identities=24% Similarity=0.437 Sum_probs=72.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||.+. .|.++.++ +|+++|||||+|.+.++|.+||+.++..|+|+.|.|..+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVV-DCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5678999999999999999999999999886 78998886 699999999999999999999988889999999999875
No 46
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.81 E-value=4.5e-21 Score=146.82 Aligned_cols=83 Identities=43% Similarity=0.691 Sum_probs=75.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
....+|||+|||+++|++||+++|++||++ .|.|+.+++|+++|||||+|.+.++|++||++|+..|+||.|+|.+++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~--~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCCCS--EEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe--EEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 456789999999999999999999999943 799999999999999999999999999999669999999999999998
Q ss_pred HHHHH
Q 025001 248 HEEMD 252 (259)
Q Consensus 248 ~~~~~ 252 (259)
+.+..
T Consensus 122 ~~~~~ 126 (139)
T 2hgn_A 122 TTGAS 126 (139)
T ss_dssp CSCC-
T ss_pred CCCCC
Confidence 76654
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=126.62 Aligned_cols=81 Identities=20% Similarity=0.189 Sum_probs=72.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.+.++|||+|||+++|+++|+++|++||.+. .|.++.+. +|+++|||||+|.+.++|.+|++. |+..++|+.|.|..
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 4567999999999999999999999999886 89998886 899999999999999999999987 99999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8764
No 48
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=131.62 Aligned_cols=81 Identities=38% Similarity=0.730 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE--EEE-ecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD--VLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~--v~~-~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
..+.++|||+|||+++|+++|+++|++|+.+. |.| .+.+|+++|||||+|.+.++|++||+.++..+++|.|.|..+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 34578999999999999999999999998654 544 367999999999999999999999999888999999999888
Q ss_pred chHH
Q 025001 130 KRQE 133 (259)
Q Consensus 130 ~~~~ 133 (259)
+.++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7544
No 49
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.3e-20 Score=133.17 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
...++|||+|||+++|+++|+++|++||.+. .|.|+.+..|+++|||||+|.+.++|.+||..|+..|+||.|.|..+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~-~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVL-NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEE-EEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEE-EEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4568899999999999999999999999886 899999888999999999999999999999999999999999998765
Q ss_pred H
Q 025001 248 H 248 (259)
Q Consensus 248 ~ 248 (259)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=128.80 Aligned_cols=81 Identities=28% Similarity=0.487 Sum_probs=75.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||.+. .|.++.+.+|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVK-DLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 5678899999999999999999999999886 89999998999999999999999999999977 999999999999998
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.+.
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 51
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=5.6e-20 Score=130.42 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=68.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCC--CccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g--~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
.+|||+|||+++|+++|+++|++|| .+. .|.++.++ +|+++|||||+|.+.++|.+||+. |+..|+||.|.|..+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~-~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDIL-EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCC-CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceE-EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999999999 665 79999886 899999999999999999999976 999999999999998
Q ss_pred CHHH
Q 025001 247 SHEE 250 (259)
Q Consensus 247 ~~~~ 250 (259)
.+..
T Consensus 81 ~~~~ 84 (90)
T 3p5t_L 81 NKLE 84 (90)
T ss_dssp ----
T ss_pred CCCc
Confidence 7654
No 52
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.9e-19 Score=132.24 Aligned_cols=88 Identities=32% Similarity=0.492 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE--EEE-ecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD--VLF-VHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~--v~~-~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
..+.++|||+|||+++|+++|+++|+.|+.+. +++ .+.+|+++|||||+|.+.++|++||.+++..|+||.|.|..+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 44578999999999999999999999997653 344 357999999999999999999999998899999999999999
Q ss_pred chHHHHHHHhh
Q 025001 130 KRQEYYKAIAN 140 (259)
Q Consensus 130 ~~~~~~~~~~~ 140 (259)
..+++......
T Consensus 102 ~~~~~~~~~~~ 112 (124)
T 1wel_A 102 TKKGMLEKIDM 112 (124)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 98887655443
No 53
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.7e-19 Score=125.57 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=74.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
.+.-|+|+||++.+|+++|+++|.+||.+. .+++.. ++|||||+|.++++|.+|++. |+..|+||+|+|..++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~-~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLV-SFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEE-EEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEE-EEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356799999999999999999999999986 677753 799999999999999999988 9999999999999999
Q ss_pred HHHHHHHHH
Q 025001 248 HEEMDEALS 256 (259)
Q Consensus 248 ~~~~~~~~~ 256 (259)
..|+...+.
T Consensus 80 e~~~~~~~~ 88 (89)
T 2wbr_A 80 ENEVQSIMQ 88 (89)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 988876543
No 54
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=2e-19 Score=125.29 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=72.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCH
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~ 248 (259)
.+|||+|||+++|+++|+++|++||.+. .+.++.++ +|+++|||||+|.+.++|.+|++. |+..++|+.|.|..+.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYL-SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999999999886 78888885 899999999999999999999986 99999999999999875
Q ss_pred H
Q 025001 249 E 249 (259)
Q Consensus 249 ~ 249 (259)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=127.64 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=74.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCccce--------EEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCc
Q 025001 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--------IHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMT 235 (259)
Q Consensus 166 ~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~--------v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~ 235 (259)
......+|||+|||+++|+++|+++|++||.+. . |.++.++ +|+++|||||+|.+.++|.+|++. |+..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIK-TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBC-EETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEe-eccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 345678999999999999999999999999886 6 8898885 799999999999999999999986 9999
Q ss_pred cCCeEEEEEeCC
Q 025001 236 LGSRYIELFPSS 247 (259)
Q Consensus 236 l~gr~i~V~~~~ 247 (259)
|+||.|.|..++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 56
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=126.81 Aligned_cols=80 Identities=34% Similarity=0.630 Sum_probs=73.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
....+|||+|||+++|+++|+++|+.| .+. .|.|+.+.+|+++|||||+|.+.++|.+||++|+..|+||.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPV-AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCS-EEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-Cce-EEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 567899999999999999999999999 554 799999999999999999999999999999999999999999999886
Q ss_pred HH
Q 025001 248 HE 249 (259)
Q Consensus 248 ~~ 249 (259)
++
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 57
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=139.65 Aligned_cols=85 Identities=9% Similarity=0.208 Sum_probs=76.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCC--CccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g--~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
...+|||+|||+++|+++|+++|+.|| .+. .|.|+.|+ +|+++|||||+|.+.++|.+||+. |+..|+||.|.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~-~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVV-ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEE-EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 467999999999999999999999999 665 78998886 899999999999999999999998 9999999999999
Q ss_pred eCCHHHHHHH
Q 025001 245 PSSHEEMDEA 254 (259)
Q Consensus 245 ~~~~~~~~~~ 254 (259)
.+.++.....
T Consensus 133 ~a~~~~~~~~ 142 (156)
T 3n9u_C 133 PATRQNLSQF 142 (156)
T ss_dssp ECCHHHHHHH
T ss_pred EcCCCcchhh
Confidence 9988765543
No 58
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-19 Score=126.15 Aligned_cols=80 Identities=26% Similarity=0.380 Sum_probs=74.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
..+.++|||+|||+++|+++|+++|++||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEE-EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCee-EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999999999886 78888887 689999999999999999999987 9999999999999
Q ss_pred eCC
Q 025001 245 PSS 247 (259)
Q Consensus 245 ~~~ 247 (259)
.++
T Consensus 91 ~a~ 93 (95)
T 2cqc_A 91 GPS 93 (95)
T ss_dssp CCS
T ss_pred ecC
Confidence 875
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=127.41 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=74.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||.+. .|.|+.+++|+++|||||+|.+.++|.+|++. |+..|+|+.|.|..+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLT-KVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 5678999999999999999999999999886 79999998999999999999999999999986 999999999999987
Q ss_pred C
Q 025001 247 S 247 (259)
Q Consensus 247 ~ 247 (259)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 60
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=128.34 Aligned_cols=81 Identities=16% Similarity=0.404 Sum_probs=75.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.|+.++ +|+++|||||+|.+.++|.+||++|+..|+|+.|.|..+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVT-EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEE-EEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5678999999999999999999999999886 78898886 799999999999999999999999999999999999998
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.++
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 61
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.6e-19 Score=124.98 Aligned_cols=78 Identities=40% Similarity=0.581 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
+...++|||+|||+++|+++|+++|+.|++..+.++ +.+|+++|||||+|.+.++|++||.+++..++||.|.|..+.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 345789999999999999999999999977777654 678999999999999999999999988889999999997765
No 62
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=8.4e-20 Score=132.15 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=76.0
Q ss_pred CCccEEEEcCCCC------CCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCC-
Q 025001 168 VHTGILRLRGLPF------SAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS- 238 (259)
Q Consensus 168 ~~~~~i~V~nLp~------~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~g- 238 (259)
...++|||+|||+ ++++++|+++|++||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|+|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~-~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV-NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3467999999999 999999999999999886 89998887 599999999999999999999986 9999999
Q ss_pred eEEEEEeCCHHHH
Q 025001 239 RYIELFPSSHEEM 251 (259)
Q Consensus 239 r~i~V~~~~~~~~ 251 (259)
|.|.|..+.+.+-
T Consensus 83 r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 83 HRLFLYTMKDVER 95 (100)
T ss_dssp CBCEEEESHHHHH
T ss_pred eEEEEEECchhhh
Confidence 9999999977653
No 63
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=131.89 Aligned_cols=87 Identities=30% Similarity=0.535 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCc----eEEEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDI----VDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~i----v~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~ 127 (259)
+.+.++|||+|||+++|+++|+++|+.|+. ..|.++ ++.|+++|||||+|.+.++|++||.+++..++||.|.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 455889999999999999999999999865 457654 667999999999999999999999998999999999999
Q ss_pred ecchHHHHHHHh
Q 025001 128 RSKRQEYYKAIA 139 (259)
Q Consensus 128 ~~~~~~~~~~~~ 139 (259)
.+...++.....
T Consensus 88 ~a~~~~~~~~~~ 99 (107)
T 2lmi_A 88 EINNEDVDALMK 99 (107)
T ss_dssp ECCHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 999887655544
No 64
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=3.6e-19 Score=124.59 Aligned_cols=79 Identities=27% Similarity=0.315 Sum_probs=72.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeC-CCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMN-SDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~-~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.+.++|||+|||+++|+++|+++|++||.+. .|.++.+ .+|+++|||||+|.+.++|.+|++. |+..++|+.|.|..
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEE-EEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4678999999999999999999999999886 7888877 4899999999999999999999976 99999999999988
Q ss_pred CC
Q 025001 246 SS 247 (259)
Q Consensus 246 ~~ 247 (259)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 65
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4e-19 Score=128.08 Aligned_cols=82 Identities=26% Similarity=0.485 Sum_probs=75.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|+|+.|.|..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLS-ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 5678999999999999999999999999886 78998887 899999999999999999999976 99999999999999
Q ss_pred CCHHH
Q 025001 246 SSHEE 250 (259)
Q Consensus 246 ~~~~~ 250 (259)
+.+..
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 87653
No 66
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=6.1e-19 Score=128.91 Aligned_cols=80 Identities=24% Similarity=0.379 Sum_probs=75.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
....++|||+|||+.+|+++|+++|++||.+. .|.|+.+.+|+++|||||+|.+.++|.+||+. |+..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35678999999999999999999999999885 89999999999999999999999999999996 99999999999988
Q ss_pred CC
Q 025001 246 SS 247 (259)
Q Consensus 246 ~~ 247 (259)
++
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 67
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=8.9e-19 Score=129.83 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=75.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVV-SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCS-EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4568999999999999999999999999886 79998887 899999999999999999999977 99999999999998
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.++
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8654
No 68
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.8e-19 Score=125.00 Aligned_cols=79 Identities=18% Similarity=0.303 Sum_probs=72.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||+++|+++|+++|++||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVV-KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEE-EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4678999999999999999999999999886 78888877 589999999999999999999976 99999999999988
Q ss_pred CC
Q 025001 246 SS 247 (259)
Q Consensus 246 ~~ 247 (259)
+.
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 69
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=9.2e-19 Score=127.53 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=75.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCC---eEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS---RYIEL 243 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~g---r~i~V 243 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.|+.+++|+++|||||+|.+.++|.+||+. |+..+.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVID-ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 4578999999999999999999999999886 89999999999999999999999999999986 9999988 99999
Q ss_pred EeCCHH
Q 025001 244 FPSSHE 249 (259)
Q Consensus 244 ~~~~~~ 249 (259)
..+.+.
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 998654
No 70
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=4.7e-19 Score=131.48 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=70.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCH
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~ 248 (259)
..+|||+|||+++|+++|+++|++||.+. .|+|+.+. +.++|||||+|.+.++|.+||+. |+..|+||.|.|..+.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~-~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNIL-SCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEE-EEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 45799999999999999999999999886 89998885 45899999999999999999987 99999999999988754
No 71
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.6e-19 Score=126.28 Aligned_cols=81 Identities=21% Similarity=0.361 Sum_probs=74.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.+.++|||+|||+++|+++|+++|++||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. |+..|+|+.|.|..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKID-NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4578999999999999999999999999886 78888886 699999999999999999999986 99999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.++
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8653
No 72
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7e-19 Score=128.18 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=75.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|++||.+. .|.++.+. +|+++|||||+|.+.++|.+||+. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVV-NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999999999999999999999999886 78898887 899999999999999999999997 9999999999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
.+.+.
T Consensus 91 ~a~~~ 95 (105)
T 1x5u_A 91 KASAH 95 (105)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98765
No 73
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.3e-19 Score=127.38 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=75.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|++||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSIS-RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35678999999999999999999999999886 79998886 899999999999999999999986 9999999999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
++.+.
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98654
No 74
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=126.22 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
++++|||+|||+++|+++|+++|++|| |..+.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 367999999999999999999999996 5556654 4 489999999999999999999997 78899999999997663
No 75
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.1e-19 Score=127.42 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=75.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
....++|||+|||+++|+++|+++|++||.+. .|.|+.+ +|.++|||||+|.+.++|.+||+. |+..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTIT-SAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEE-EEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 35678999999999999999999999999886 7899988 999999999999999999999986 99999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.++
T Consensus 90 a~~~ 93 (103)
T 2d9p_A 90 AQRK 93 (103)
T ss_dssp CSSC
T ss_pred eccc
Confidence 8764
No 76
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.5e-18 Score=126.11 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=73.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~ 245 (259)
....++|||+|||+++|+++|+++|++|| +. .|.|+.+. +|+++|||||+|.+.++|.+||++|+..|+|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IR-SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ce-EEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 35678999999999999999999999998 44 68998887 69999999999999999999995599999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8653
No 77
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=2.4e-19 Score=122.58 Aligned_cols=74 Identities=15% Similarity=0.296 Sum_probs=69.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 172 ~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
+|||+|||+++|+++|+++|++||.+. .|.++.++ +|+++|||||+|.+.++|++|+++|+..|+|+.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVD-DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCS-EECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999999886 78888887 799999999999999999999988999999999999864
No 78
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=5.4e-19 Score=126.74 Aligned_cols=80 Identities=25% Similarity=0.498 Sum_probs=73.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
+++|||+|||+++|+++|+++|++||.+. .|.++.+. +|+++|||||+|.+.++|.+|++. |+..|+|+.|.|..+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVI-NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 57899999999999999999999999886 78888886 799999999999999999999976 9999999999999987
Q ss_pred HHH
Q 025001 248 HEE 250 (259)
Q Consensus 248 ~~~ 250 (259)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 79
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.2e-19 Score=126.69 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=74.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceE-EEeeC-CCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI-HITMN-SDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v-~i~~~-~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
.+.++|||+|||+++|+++|+++|++||.+. .| .|+.+ .+|.++|||||+|.+.++|.+||+. |+..|+|+.|.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBS-SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3568999999999999999999999999886 67 88888 4899999999999999999999996 9999999999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
++.+.
T Consensus 82 ~a~~~ 86 (96)
T 1x5t_A 82 YAFKK 86 (96)
T ss_dssp ESCCC
T ss_pred Eeccc
Confidence 98654
No 80
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=124.27 Aligned_cols=81 Identities=31% Similarity=0.601 Sum_probs=71.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||.+.....+....+|+++|||||+|.+.++|.+||+. |+..|+||.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4568999999999999999999999999876333444455899999999999999999999977 999999999999987
Q ss_pred CH
Q 025001 247 SH 248 (259)
Q Consensus 247 ~~ 248 (259)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 81
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2e-19 Score=137.28 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=74.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.|+.+. +|+++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG-DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS-EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35678899999999999999999999999885 78888876 799999999999999999999986 9999999999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
++.+.
T Consensus 123 ~a~~~ 127 (135)
T 2lea_A 123 MARYG 127 (135)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98653
No 82
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=2.1e-18 Score=127.71 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=75.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.|+.+. +|+++|||||+|.+.++|.+||+. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS-DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999999999886 89999886 899999999999999999999987 9999999999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
.+.+.
T Consensus 91 ~a~~~ 95 (115)
T 2dgo_A 91 WATRK 95 (115)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 98654
No 83
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.9e-19 Score=127.81 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=74.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.|+.+. +|+++|||||+|.+.++|.+||+. |+..|+|+.|.|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVG-DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 35678999999999999999999999999886 78888876 699999999999999999999986 9999999999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
.+...
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 98643
No 84
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=1e-18 Score=124.93 Aligned_cols=80 Identities=29% Similarity=0.543 Sum_probs=69.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEee-CCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITM-NSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~-~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||+++|+++|+++|++||.+. .+.++. ..+|+++|||||+|.+.++|.+||+. |+..|+||.|.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIP-GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCT-TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcc-ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3468999999999999999999999999876 455554 45899999999999999999999986 99999999999998
Q ss_pred CCH
Q 025001 246 SSH 248 (259)
Q Consensus 246 ~~~ 248 (259)
++.
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 85
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=127.23 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=74.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.|+.+++|+++|||||+|.+.++|.+||+. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVV-RADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEE-EEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 4578999999999999999999999999886 79999998999999999999999999999986 999999999999987
Q ss_pred CH
Q 025001 247 SH 248 (259)
Q Consensus 247 ~~ 248 (259)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 86
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=129.49 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=75.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||.+. .|.|+.+.+|+++|||||+|.+.++|++|++. |+..|+|+.|.|..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPIS-EVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCS-EEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4567999999999999999999999999885 89999988999999999999999999999987 999999999999998
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.+.
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=8.6e-19 Score=128.59 Aligned_cols=82 Identities=26% Similarity=0.403 Sum_probs=74.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIE-SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEE-EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45678999999999999999999999999886 78888875 799999999999999999999986 9999999999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
.+.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 88653
No 88
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.3e-19 Score=127.39 Aligned_cols=81 Identities=26% Similarity=0.286 Sum_probs=74.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.+.++|||+|||+++|+++|+++|+.||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|+|+.|.|..
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCC-CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4678999999999999999999999999886 78888875 799999999999999999999976 99999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.+.
T Consensus 89 a~~~ 92 (102)
T 2cqb_A 89 AKPM 92 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 89
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=124.81 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=74.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.|+.+..+ ++|||||+|.+.++|.+||+. |+..|+|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEE-EEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35678999999999999999999999999886 7899888655 899999999999999999986 99999999999999
Q ss_pred CCHHH
Q 025001 246 SSHEE 250 (259)
Q Consensus 246 ~~~~~ 250 (259)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 87643
No 90
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=126.30 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=74.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.++.+. +|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeE-EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 35678999999999999999999999999886 78888886 699999999999999999999986 9999999999999
Q ss_pred eCCH
Q 025001 245 PSSH 248 (259)
Q Consensus 245 ~~~~ 248 (259)
.+.+
T Consensus 99 ~a~~ 102 (106)
T 1p27_B 99 WCFV 102 (106)
T ss_dssp ESEE
T ss_pred eecC
Confidence 8754
No 91
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=127.78 Aligned_cols=82 Identities=15% Similarity=0.311 Sum_probs=75.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-C------CCccCC
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-D------RMTLGS 238 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~------~~~l~g 238 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+. | +..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLK-YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 35678999999999999999999999999886 78998886 689999999999999999999987 8 999999
Q ss_pred eEEEEEeCCHH
Q 025001 239 RYIELFPSSHE 249 (259)
Q Consensus 239 r~i~V~~~~~~ 249 (259)
+.|.|..+.+.
T Consensus 91 ~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 RQLKVDLAVTR 101 (111)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEEEECCCC
Confidence 99999998654
No 92
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=7.2e-19 Score=130.28 Aligned_cols=103 Identities=13% Similarity=0.229 Sum_probs=86.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
.+.++|||+|||+++|+++|+++|+.||.+ .+.+. .++.++|||||+|.+.++|++|+. +++..++|+.|.|..+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVG-NTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEE-CSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-eCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 347899999999999999999999999754 56555 356679999999999999999998 788999999999987764
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCc
Q 025001 132 QEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLS 197 (259)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~ 197 (259)
... ..+++...++++|.++|++||..
T Consensus 85 ~~~----------------------------------------~~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 85 NRA----------------------------------------FQKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp HHH----------------------------------------TTTSCHHHHHHHHHHHHHHHCCC
T ss_pred Chh----------------------------------------hhhhhHhHhHHHHHHHHHHhCCC
Confidence 322 05677888999999999999864
No 93
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=9e-20 Score=139.56 Aligned_cols=80 Identities=31% Similarity=0.478 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecch
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~ 131 (259)
+...++|||+|||+++||+||+++|++|++++|.|+ +++|+++|||||+|.+.++|++||++++..|++|.|.|..+..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 445789999999999999999999999998887754 6789999999999999999999998889999999999988764
Q ss_pred H
Q 025001 132 Q 132 (259)
Q Consensus 132 ~ 132 (259)
.
T Consensus 123 ~ 123 (139)
T 2hgn_A 123 T 123 (139)
T ss_dssp S
T ss_pred C
Confidence 3
No 94
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=8.1e-19 Score=138.40 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=75.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+.+|+++|+++|++||.+. .|.|+.+. +|.++|||||+|.+.++|.+||+. |+..|+|+.|.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEE-EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999999999886 78998885 899999999999999999999986 9999999999999
Q ss_pred eCCHHH
Q 025001 245 PSSHEE 250 (259)
Q Consensus 245 ~~~~~~ 250 (259)
++.+..
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 986544
No 95
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.4e-18 Score=122.64 Aligned_cols=79 Identities=19% Similarity=0.409 Sum_probs=72.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
..++|||+|||+++|+++|+++|++||.+. .|.++.+. +|+++|||||+|.+.++|.+|+.+|+..|+|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVN-RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEE-EEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 457899999999999999999999999886 89999886 8999999999999999999999449999999999999886
Q ss_pred H
Q 025001 248 H 248 (259)
Q Consensus 248 ~ 248 (259)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 96
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2e-18 Score=122.61 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=72.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||.+. .|.+..+ +|+++|||||+|.+.++|.+|++. |+..|+|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~-~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVL-YADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEE-EEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 5678999999999999999999999999886 7888874 889999999999999999999987 999999999999988
Q ss_pred CH
Q 025001 247 SH 248 (259)
Q Consensus 247 ~~ 248 (259)
.+
T Consensus 84 ~~ 85 (92)
T 2dgv_A 84 RN 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 97
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=7.8e-19 Score=127.70 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=75.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcc-CCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCc-cCCeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMT-LGSRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~-l~gr~i~V~ 244 (259)
....+|||+|||+++|+++|+++|+. ||.+. .|.|+.+.+|+++|||||+|.+.++|.+||+. |+.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~-~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR-GGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEE-EEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeE-EEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 46789999999999999999999999 99885 89999998999999999999999999999986 9999 999999998
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
.+.+.
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 88654
No 98
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=125.40 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=74.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||+++|+++|+++|++||.+. .|.|+.++ +++++|||||+|.+.++|.+||+. |+..|+|+.|.|.+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQIS-EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCC-EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 5678999999999999999999999999886 78998876 789999999999999999999976 99999999999998
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.+.
T Consensus 89 a~~~ 92 (102)
T 1x5s_A 89 AGKS 92 (102)
T ss_dssp EECC
T ss_pred CCCC
Confidence 7543
No 99
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=128.26 Aligned_cols=83 Identities=20% Similarity=0.196 Sum_probs=75.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.|+.++ +|+++|||||+|.+.++|.+||.+|+..|+|+.|.|..+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVR-DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEE-EEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEe-EEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 4568999999999999999999999999886 78998887 589999999999999999999955999999999999998
Q ss_pred CHHHH
Q 025001 247 SHEEM 251 (259)
Q Consensus 247 ~~~~~ 251 (259)
.+...
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 77653
No 100
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.4e-19 Score=128.11 Aligned_cols=85 Identities=19% Similarity=0.373 Sum_probs=76.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. |+..|+|+.|.|..
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVV-SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCS-EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCee-EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 3567899999999999999999999999886 78888876 899999999999999999999986 99999999999999
Q ss_pred CCHHHHHH
Q 025001 246 SSHEEMDE 253 (259)
Q Consensus 246 ~~~~~~~~ 253 (259)
+.+.....
T Consensus 85 a~~~~~~~ 92 (104)
T 1p1t_A 85 AASEKNKE 92 (104)
T ss_dssp TTCTTHHH
T ss_pred CCCccchh
Confidence 97765443
No 101
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=8.5e-19 Score=127.76 Aligned_cols=83 Identities=22% Similarity=0.329 Sum_probs=76.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~ 245 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+.|+..|+|+.|.|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVV-DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEE-EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 35678999999999999999999999999886 78998885 79999999999999999999998899999999999998
Q ss_pred CCHHH
Q 025001 246 SSHEE 250 (259)
Q Consensus 246 ~~~~~ 250 (259)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87654
No 102
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=8.3e-18 Score=126.26 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=76.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 166 ~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
.....++|||+|||+++|+++|+++|+.||.+. .|.|+.+.+|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCS-EEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345678999999999999999999999999885 89999888999999999999999999999986 9999999999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
.+...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 88643
No 103
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.6e-18 Score=127.80 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=73.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|++||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|+|+.|+|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVI-SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEE-EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35678999999999999999999999999886 78888875 799999999999999999999987 9999999999998
Q ss_pred eC
Q 025001 245 PS 246 (259)
Q Consensus 245 ~~ 246 (259)
++
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 104
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=125.75 Aligned_cols=82 Identities=26% Similarity=0.417 Sum_probs=74.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccc-------eEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSED-------SIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS 238 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~-------~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~g 238 (259)
...++|||+|||+++|+++|+++|+.||.+.. .|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 56789999999999999999999999998753 48888884 899999999999999999999986 9999999
Q ss_pred eEEEEEeCCHH
Q 025001 239 RYIELFPSSHE 249 (259)
Q Consensus 239 r~i~V~~~~~~ 249 (259)
+.|.|.++.+.
T Consensus 93 ~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 SKLKVSLARKK 103 (113)
T ss_dssp EECEEECSSCC
T ss_pred CEEEEEECCCC
Confidence 99999998654
No 105
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=125.59 Aligned_cols=80 Identities=18% Similarity=0.360 Sum_probs=73.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-C-CCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D-GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~-g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~ 245 (259)
.+.++|||+|||+++|+++|+++|+.|| +. .|.|+.++ + |+++|||||+|.+.++|.+||.+|+..|+|+.|.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~-~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-IS-AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EE-EEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ce-EEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 5678999999999999999999999999 64 79998887 3 8999999999999999999994499999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.+.
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8754
No 106
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.9e-18 Score=123.82 Aligned_cols=81 Identities=21% Similarity=0.393 Sum_probs=73.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+ ++..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVL-MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeE-EEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 5677899999999999999999999999886 78998886 69999999999999999999998 578999999999998
Q ss_pred CHHH
Q 025001 247 SHEE 250 (259)
Q Consensus 247 ~~~~ 250 (259)
.+++
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 7653
No 107
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=2.6e-18 Score=125.34 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=74.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCcc---CCeEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTL---GSRYI 241 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l---~gr~i 241 (259)
....++|||+|||+++|+++|+++|++||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+. |+..+ .|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIY-ELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCC-EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 35678999999999999999999999999886 78998877 699999999999999999999986 99887 89999
Q ss_pred EEEeCCHH
Q 025001 242 ELFPSSHE 249 (259)
Q Consensus 242 ~V~~~~~~ 249 (259)
.|..+.+.
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99998654
No 108
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=3.5e-19 Score=121.74 Aligned_cols=74 Identities=24% Similarity=0.376 Sum_probs=68.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 172 ILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 172 ~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
+|||+|||+++|+++|+++|++||.+. .|.++.++ +|+++|||||+|.+.++|.+|++.++..++|+.|.|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVE-SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCS-EECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999886 78888876 699999999999999999999999999999999999864
No 109
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=7.3e-18 Score=124.02 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.++|||+|||+++||++|+++|++|| |.++.|+ ++ +|+++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 367999999999999999999999996 5566554 54 79999999999999999999997 78889999999998876
Q ss_pred hH
Q 025001 131 RQ 132 (259)
Q Consensus 131 ~~ 132 (259)
..
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 110
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=3.1e-18 Score=125.79 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=74.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.++.+. +|+++|||||+|.+.++|.+||+. |+..|+|+.|.|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIK-NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEE-EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 35678999999999999999999999999886 78888876 799999999999999999999986 9999999999999
Q ss_pred eCCH
Q 025001 245 PSSH 248 (259)
Q Consensus 245 ~~~~ 248 (259)
.+.+
T Consensus 102 ~a~~ 105 (110)
T 1oo0_B 102 WCFV 105 (110)
T ss_dssp ESEE
T ss_pred Eccc
Confidence 8854
No 111
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=5.7e-18 Score=119.04 Aligned_cols=76 Identities=16% Similarity=0.324 Sum_probs=67.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++|+++|+++|++|| +..+.++ + .+|+++|||||+|.+.++|++||+.++..++|+.|.|..
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44578999999999999999999999996 4556654 4 479999999999999999999999888899999999865
No 112
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=128.20 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+.|+..|+|+.|.|..+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLT-DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCS-EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 4568999999999999999999999999886 78998886 699999999999999999999988999999999999998
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.++
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 113
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.2e-18 Score=126.58 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=72.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~ 245 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.++.+. +|+++|||||+|.+.++|.+||+.++..|+|+.|.|..
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEE-EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeE-EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 35678999999999999999999999999886 78998886 69999999999999999999999977999999999998
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.+.
T Consensus 101 a~~~ 104 (109)
T 2rs2_A 101 AFPR 104 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8654
No 114
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=6.4e-18 Score=122.68 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
+.+.++|||+|||+++|+++|+++|+.|+|..|.++ ++ +|+++|||||+|.+.++|++||.+++..++|+.|.|..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 344789999999999999999999999998787655 44 7999999999999999999999888889999999997764
No 115
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=123.36 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=73.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
....++|||+|||+++|+++|+++|++||.+. .|.|+.+..+ ++|||||+|.+.++|.+||+. |+..|.|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCK-SCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEE-EEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEe-EEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35678999999999999999999999999886 7889887544 799999999999999999986 99999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8654
No 116
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=123.00 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC---ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccc----cCCCeEE
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD---IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQ----NMGRRYV 124 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~---iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~----~~~~r~i 124 (259)
.-.||||+|||+++|+++|+++|++|| +.+|.++ ++ +|+++|||||+|.+.++|++||+ +++. .++||.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 356999999999999999999999997 3457654 54 79999999999999999999998 4554 4899999
Q ss_pred EEEecc
Q 025001 125 EVFRSK 130 (259)
Q Consensus 125 ~v~~~~ 130 (259)
.|..+.
T Consensus 88 ~V~~Ak 93 (95)
T 2lkz_A 88 GVDFAK 93 (95)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 997653
No 117
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5e-18 Score=125.95 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=73.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.|+.++ +++++|||||+|.+.++|.+||+. |+ .|+|+.|.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIE-EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEE-EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCee-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 35678999999999999999999999999886 78998886 799999999999999999999998 76 8999999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 98643
No 118
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=123.56 Aligned_cols=81 Identities=21% Similarity=0.319 Sum_probs=72.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCC--C--CCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD--G--RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~--g--~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
.+.++|||+|||+++|+++|+++|++||.+. .|.++.+.. | +++|||||+|.+.++|.+||+. |+..|+|+.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIK-SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3567899999999999999999999999885 788887653 4 8999999999999999999997 99999999999
Q ss_pred EEeCCHH
Q 025001 243 LFPSSHE 249 (259)
Q Consensus 243 V~~~~~~ 249 (259)
|..+.+.
T Consensus 82 V~~a~~~ 88 (98)
T 2cpf_A 82 VRISERA 88 (98)
T ss_dssp EECSSCS
T ss_pred EEEccCC
Confidence 9998654
No 119
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=124.25 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=68.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCc--cCCeEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMT--LGSRYIEL 243 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~--l~gr~i~V 243 (259)
..++++|||+|||+++|+++|+++|++||.+. .|.++. +||||||+|.+.++|.+|++. |+.. |+||+|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~-~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPIS-YVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEE-EEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 35678999999999999999999999999886 787773 578999999999999999987 7664 89999999
Q ss_pred EeCCHHH
Q 025001 244 FPSSHEE 250 (259)
Q Consensus 244 ~~~~~~~ 250 (259)
..++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9997654
No 120
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-18 Score=119.91 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=68.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
++|||+|||+++|+++|+++|++||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. + ..++|+.|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVK-ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCC-CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 3699999999999999999999999886 78998886 799999999999999999999998 6 9999999999875
No 121
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=124.85 Aligned_cols=82 Identities=24% Similarity=0.388 Sum_probs=74.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC--CCCCceEEEEEEcCHHHHHHHHHh--CCCccCCeEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS--DGRPTGEAFVEFANAEDSKAAMAK--DRMTLGSRYIE 242 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~--~g~~~G~afV~F~~~~~A~~Al~~--~~~~l~gr~i~ 242 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.|+.+. +|+++|||||+|.+.++|.+||+. |+..|+|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELK-TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeE-EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 35678999999999999999999999999886 78998873 899999999999999999999975 89999999999
Q ss_pred EEeCCHH
Q 025001 243 LFPSSHE 249 (259)
Q Consensus 243 V~~~~~~ 249 (259)
|.++.+.
T Consensus 91 v~~a~~~ 97 (107)
T 2cph_A 91 LEWADSE 97 (107)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 9998754
No 122
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=4.7e-19 Score=128.13 Aligned_cols=80 Identities=19% Similarity=0.354 Sum_probs=70.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC--CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS--DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~--~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|+.|| +. .|.|+.+. +|+++|||||+|.+.++|.+||.+|+..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~-~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-IS-AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EE-EEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-Ce-EEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 35678999999999999999999999999 65 79998886 7999999999999999999999559999999999999
Q ss_pred eCCH
Q 025001 245 PSSH 248 (259)
Q Consensus 245 ~~~~ 248 (259)
.+.+
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8864
No 123
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=126.15 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=73.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
....++|||+|||+++|+++|+++|++||.+. .|.++.+.. .++|||||+|.+.++|.+|++. |+..|+|+.|.|..
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL-DVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCS-CEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEE-EEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999886 789988754 5899999999999999999986 99999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 124
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=122.96 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=74.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeE----E
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRY----I 241 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~----i 241 (259)
...++|||+|||+++|+++|+++|++||.+...|.++.++ +|+++|||||+|.+.++|++|++. |+..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 5678999999999999999999999999774378898887 899999999999999999999997 999999999 9
Q ss_pred EEEeCCH
Q 025001 242 ELFPSSH 248 (259)
Q Consensus 242 ~V~~~~~ 248 (259)
.|..+++
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9988754
No 125
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=1.6e-18 Score=131.18 Aligned_cols=81 Identities=26% Similarity=0.350 Sum_probs=74.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
..+.++|||+|||+++|+++|+++|++||.+. .|.|+.++ +|+++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIA-DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEE-EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999999999886 78888876 789999999999999999999986 9999999999998
Q ss_pred eCCH
Q 025001 245 PSSH 248 (259)
Q Consensus 245 ~~~~ 248 (259)
++.+
T Consensus 122 ~a~~ 125 (129)
T 2kxn_B 122 FSIT 125 (129)
T ss_dssp CCSS
T ss_pred EecC
Confidence 8754
No 126
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=132.33 Aligned_cols=82 Identities=12% Similarity=0.226 Sum_probs=74.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccc-eEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCC----ccCCe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED-SIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRM----TLGSR 239 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~-~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~----~l~gr 239 (259)
....++|||+|||+++|+++|+++|++||.+.. .|+|+.++ +|+++|||||+|.+. +|.+||.. |+. .|+||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999998752 28999988 899999999999999 99999987 999 99999
Q ss_pred EEEEEeCCHH
Q 025001 240 YIELFPSSHE 249 (259)
Q Consensus 240 ~i~V~~~~~~ 249 (259)
.|.|..+.+.
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999988653
No 127
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=122.80 Aligned_cols=79 Identities=15% Similarity=0.254 Sum_probs=72.1
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIM----DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~----~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
....+|||+|||+++|+++|+ ++|++||.+. .|.|+.++.+ +|||||+|.+.++|.+||+. |+..|+||.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~-~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVK-SVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEE-EEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 466899999999999999999 9999999886 7999988766 89999999999999999986 99999999999
Q ss_pred EEeCCHH
Q 025001 243 LFPSSHE 249 (259)
Q Consensus 243 V~~~~~~ 249 (259)
|..+.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998643
No 128
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=3.4e-18 Score=141.83 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=76.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCC--CccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFV--LSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g--~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
...+|||+|||+++|+++|+++|+.|| .+. .|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|+||.|.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~-~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDIL-EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEE-EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 567899999999999999999999999 675 79999886 899999999999999999999986 9999999999999
Q ss_pred eCCHHHHHHH
Q 025001 245 PSSHEEMDEA 254 (259)
Q Consensus 245 ~~~~~~~~~~ 254 (259)
++.+......
T Consensus 146 ~a~~~~~~~~ 155 (229)
T 3q2s_C 146 PVNKQFLSQF 155 (229)
T ss_dssp ECCHHHHHHH
T ss_pred ECCCCccchh
Confidence 9998876543
No 129
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=121.48 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=71.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CC-CCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DG-RPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g-~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
..++|||+|||+++|+++|+++|++||.+. .|.++.+. ++ +++|||||+|.+.++|.+|++. |+..++|+.|.|..
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIK-MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 457899999999999999999999999886 78888776 33 4899999999999999999996 99999999999998
Q ss_pred CCH
Q 025001 246 SSH 248 (259)
Q Consensus 246 ~~~ 248 (259)
+.+
T Consensus 82 a~~ 84 (88)
T 4a8x_A 82 VLA 84 (88)
T ss_dssp ECC
T ss_pred CCC
Confidence 754
No 130
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.3e-19 Score=123.10 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=71.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.+.++|||+|||+++|+++|+++|++||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. |+..|+||.|+|..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIV-STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEE-EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4577999999999999999999999999886 78888876 799999999999999999999986 99999999998865
Q ss_pred CC
Q 025001 246 SS 247 (259)
Q Consensus 246 ~~ 247 (259)
.+
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 131
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=124.60 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
.+.++|||+|||+++|+++|+++|++|| |.+|.++ ++.|+++|||||+|.+.++|++||.+++..++|+.|.|....
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 3468999999999999999999999996 5557665 556999999999999999999999988889999999997554
No 132
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=125.00 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCC------CHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCe-
Q 025001 168 VHTGILRLRGLPFSA------GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSR- 239 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~------te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr- 239 (259)
...++|||+|||+.+ |+++|+++|++||.+. .|.|+ ..+|+++|||||+|.+.++|.+||+. ||..|+||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~-~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEE-EEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEE-EEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 456899999999999 7899999999999886 78877 56899999999999999999999997 99999999
Q ss_pred EEEEEeCCH
Q 025001 240 YIELFPSSH 248 (259)
Q Consensus 240 ~i~V~~~~~ 248 (259)
.|.|..+..
T Consensus 91 ~l~V~~a~~ 99 (105)
T 2nlw_A 91 TFRVNLFTD 99 (105)
T ss_dssp EEEEECSCC
T ss_pred eEEEEEcch
Confidence 999998863
No 133
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=122.22 Aligned_cols=78 Identities=28% Similarity=0.477 Sum_probs=71.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||. |.++.+.+|+++|||||+|.+.++|.+||+. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~----v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATF----IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSE----EECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCE----EEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 56789999999999999999999999985 4667777899999999999999999999986 999999999999998
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.+.
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 134
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-18 Score=125.66 Aligned_cols=77 Identities=18% Similarity=0.303 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-C--CCccCCeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-D--RMTLGSRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~--~~~l~gr~i~V~ 244 (259)
.+..+|||+|||+++|+++|+++|++||.+. .|.|+.+ ||||||+|.+.++|.+|++. + +..|.||.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~-~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEE-EEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4678999999999999999999999999886 7888854 79999999999999999984 4 579999999999
Q ss_pred eCCHHH
Q 025001 245 PSSHEE 250 (259)
Q Consensus 245 ~~~~~~ 250 (259)
.+.+++
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 987654
No 135
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-18 Score=123.91 Aligned_cols=74 Identities=22% Similarity=0.208 Sum_probs=63.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCC--ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhc--cccCCCeEEEEEecc
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLD--IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRN--RQNMGRRYVEVFRSK 130 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~--iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~--~~~~~~r~i~v~~~~ 130 (259)
.+|||+|||+++||++|+++|++|| |.+|.++ + .+|+++|||||+|.+.++|++||+.+ +..++||.|.|..+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5999999999999999999999997 4456654 4 47999999999999999999999843 446999999997664
No 136
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=127.97 Aligned_cols=79 Identities=28% Similarity=0.316 Sum_probs=72.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|++||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. |+..|+|+.|+|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT-DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEE-EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEE-EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999999999886 78888885 799999999999999999999986 9999999999998
Q ss_pred eC
Q 025001 245 PS 246 (259)
Q Consensus 245 ~~ 246 (259)
.+
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 64
No 137
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=5.8e-18 Score=127.38 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=74.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|++||.+. .|.|+.+. +|.++|||||+|.+.++|.+||+. |+..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIK-NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 35678999999999999999999999999886 78888886 899999999999999999999986 9999999999999
Q ss_pred eCCH
Q 025001 245 PSSH 248 (259)
Q Consensus 245 ~~~~ 248 (259)
.+.+
T Consensus 98 ~a~~ 101 (126)
T 3ex7_B 98 WCFV 101 (126)
T ss_dssp ESEE
T ss_pred EecC
Confidence 8854
No 138
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=120.66 Aligned_cols=71 Identities=20% Similarity=0.342 Sum_probs=65.1
Q ss_pred cEEEEcCCCCCC------CHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCe-EEE
Q 025001 171 GILRLRGLPFSA------GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSR-YIE 242 (259)
Q Consensus 171 ~~i~V~nLp~~~------te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr-~i~ 242 (259)
++|||+|||+.+ |+++|+++|++||.+. .|.++ ..+|+++|||||+|.+.++|.+|++. ||..|+|| .|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~-~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT-NDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEE-EEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeE-EEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 7899999999999886 67777 56899999999999999999999987 99999999 887
Q ss_pred E
Q 025001 243 L 243 (259)
Q Consensus 243 V 243 (259)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 139
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=119.24 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=67.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceE--------EEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCC
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVD--------VLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMG 120 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~--------v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~ 120 (259)
+...++|||+|||+++|+++|+++|+.|| +.. +.+. + .+|+++|||||+|.+.++|++|++ +++..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 45578999999999999999999999996 445 6554 4 489999999999999999999997 7889999
Q ss_pred CeEEEEEec
Q 025001 121 RRYVEVFRS 129 (259)
Q Consensus 121 ~r~i~v~~~ 129 (259)
|+.|.|..+
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999665
No 140
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=118.87 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
..+.++|||+|||+++|+++|+++|+.|| |..+.+. +++|+++|||||+|.+.++|++||+ +++..++|+.|.|..+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34578999999999999999999999996 5556654 6689999999999999999999996 6888999999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 94 ~ 94 (100)
T 2do4_A 94 N 94 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 141
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=124.91 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=66.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEe-cC--CCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HK--NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~-~~--~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
....++|||+|||+++|+++|+++|+.||+.++.+. ++ +|+++|||||+|.+.++|++||.+++..++|+.|.|..+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 455889999999999999999999999996567654 43 799999999999999999999988888999999998766
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 96 ~ 96 (100)
T 2j76_E 96 D 96 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 142
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=8e-18 Score=120.21 Aligned_cols=77 Identities=21% Similarity=0.389 Sum_probs=66.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceE-EE-Ee-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VL-FV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~-~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
...++|||+|||+++|+++|+++|++|+.+. +. +. +.+|+++|||||+|.+.++|++||+ +++..++|+.|.|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3468999999999999999999999997553 43 33 4689999999999999999999998 7888999999999765
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
+
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 143
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=118.85 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=67.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE-E-EEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-V-LFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v-~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
....++|||+|||+++|+++|+++|+.|+.+. + ++. +.+|+++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45578999999999999999999999997553 3 333 5689999999999999999999996 678899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 92 a~ 93 (98)
T 2cqp_A 92 GS 93 (98)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 144
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=8.7e-18 Score=128.57 Aligned_cols=82 Identities=15% Similarity=0.262 Sum_probs=75.1
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.|+.++ +|+++|||||+|.+.++|.+||+. |+..|+|+.|.|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIE-SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEE-EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35678999999999999999999999999886 78888876 689999999999999999999987 9999999999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
.+.+.
T Consensus 118 ~a~~~ 122 (139)
T 1u6f_A 118 LAASG 122 (139)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98654
No 145
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=119.92 Aligned_cols=78 Identities=21% Similarity=0.402 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
..+.++|||+|||+++|+++|+++|+.|| |.++.++ + .+|+++|||||+|.+.++|++||++++..++|+.|.|..+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34578999999999999999999999996 5567665 4 4789999999999999999999998889999999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 87 ~ 87 (99)
T 2dgs_A 87 E 87 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 146
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=121.34 Aligned_cols=77 Identities=27% Similarity=0.402 Sum_probs=68.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEe-cC-C-CCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HK-N-NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~-~~-~-g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
.+.++|||+|||+++|+++|+++|+.|||..|.++ ++ + |+++|||||+|.+.++|++||.+++..++|+.|.|..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 92 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVAD 92 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEcc
Confidence 34689999999999999999999999996667654 43 4 899999999999999999999888889999999997765
No 147
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=121.58 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=73.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCcc--------CC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL--------GS 238 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l--------~g 238 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.|+.+.+|+++|||||+|.+.++|.+||+. |+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVI-STRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 4678999999999999999999999999886 89999998999999999999999999999986 99999 68
Q ss_pred eEEEEEeCCH
Q 025001 239 RYIELFPSSH 248 (259)
Q Consensus 239 r~i~V~~~~~ 248 (259)
++|.|..+.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899988764
No 148
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=2.5e-18 Score=124.55 Aligned_cols=80 Identities=18% Similarity=0.368 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.++.+.+|+++|||||+|.+.++|.+|++ ++..|+|+.|.|..+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVK-EVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 4678999999999999999999999999886 8999998899999999999999999999999 9999999999987775
Q ss_pred HH
Q 025001 248 HE 249 (259)
Q Consensus 248 ~~ 249 (259)
+.
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 33
No 149
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=6.2e-18 Score=126.88 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=72.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
..++|||+|||+++|+++|+++|+.||.+. .|.++.++ +|+++|||||+|.+.++|.+||++|+..|+|+.|.|..+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSIN-RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEE-EEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 468999999999999999999999999886 78888875 8999999999999999999999559999999999999885
Q ss_pred H
Q 025001 248 H 248 (259)
Q Consensus 248 ~ 248 (259)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 150
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9e-18 Score=124.15 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
...++|||+|||+++|+++|+++|+.|| |..|.++ ++ +|+++|||||+|.+.++|++||.+++..++|+.|.|..+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 4578999999999999999999999996 5567665 44 6899999999999999999999888999999999998776
Q ss_pred hH
Q 025001 131 RQ 132 (259)
Q Consensus 131 ~~ 132 (259)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 44
No 151
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=6.9e-18 Score=124.14 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=68.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCC-CccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g-~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
....+|||+|||+++|+++|+++|++|| .+. .+.+.. .+++|||||+|.+.++|++||+. |+..|+||.|.|..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~-~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETT-FSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCS-EEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeE-EEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999 665 676653 35899999999999999999987 99999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8644
No 152
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=129.64 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC---ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHh-ccccCCCeEEEEEe
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD---IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQR-NRQNMGRRYVEVFR 128 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~---iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~-~~~~~~~r~i~v~~ 128 (259)
+.++|||+|||+++|+++|+++|+.|| |++|.++ + .+|+++|||||+|.+.++|++||+. ++..++|+.|.|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999998 4456554 5 4899999999999999999999985 88899999999998
Q ss_pred cchHHH
Q 025001 129 SKRQEY 134 (259)
Q Consensus 129 ~~~~~~ 134 (259)
+.....
T Consensus 134 a~~~~~ 139 (156)
T 3n9u_C 134 ATRQNL 139 (156)
T ss_dssp CCHHHH
T ss_pred cCCCcc
Confidence 876543
No 153
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=119.46 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
..+.++|||+|||+++|+++|+++|+.|| |..+.+...+|+++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45688999999999999999999999996 55666553389999999999999999999998 78889999999997765
No 154
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4e-17 Score=119.68 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||.+. .|.|.. +++++|||||+|.+.++|.+||+. |+..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR-DIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 5678999999999999999999999999885 677754 466899999999999999999976 999999999999988
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.+.
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 653
No 155
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=6.6e-18 Score=124.42 Aligned_cols=81 Identities=16% Similarity=0.340 Sum_probs=72.5
Q ss_pred CCccEEEEcCCCCCCCHHHHH---HHhccCCCccceEEEeeCC-C---CCCceEEEEEEcCHHHHHHHHHh-CCCccCCe
Q 025001 168 VHTGILRLRGLPFSAGKDDIM---DFFKDFVLSEDSIHITMNS-D---GRPTGEAFVEFANAEDSKAAMAK-DRMTLGSR 239 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~---~~F~~~g~~~~~v~i~~~~-~---g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr 239 (259)
...++|||+|||+++|+++|+ ++|++||.+. .|.|+.+. + ++++|||||+|.+.++|.+||+. |+..|+||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~-~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH-KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEE-EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEE-EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 456789999999999999999 9999999886 78888776 2 36779999999999999999997 99999999
Q ss_pred EEEEEeCCHH
Q 025001 240 YIELFPSSHE 249 (259)
Q Consensus 240 ~i~V~~~~~~ 249 (259)
.|.|..+.++
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999998754
No 156
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.6e-18 Score=122.70 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=69.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCH
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~ 248 (259)
++|||+|||+++|+++|+++|++||.+. .|.++.+. +|+++|||||+|.+.+ |.+|+.. |+..++|+.|.|..+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVF-NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCS-EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEE-EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4799999999999999999999999886 78998887 6999999999999999 9999987 99999999999999977
Q ss_pred HHH
Q 025001 249 EEM 251 (259)
Q Consensus 249 ~~~ 251 (259)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 157
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=4.9e-18 Score=120.32 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=62.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCC---ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLD---IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~---iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
.+|||+|||+++|+++|+++|+.|| +.++.++ + .+|+++|||||+|.+.++|++||+ +++..++||.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999998 4456554 5 489999999999999999999996 78889999999997665
No 158
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=125.06 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=69.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-C--CCccCCeEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-D--RMTLGSRYIEL 243 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~--~~~l~gr~i~V 243 (259)
..+.++|||+|||+++|+++|+++|++||.+. .|.|+.+ +|||||+|.+.++|.+|++. + +..|.||.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~-~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVT-NLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCC-EEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 35678999999999999999999999999886 7888854 79999999999999999985 5 57899999999
Q ss_pred EeCCHHHH
Q 025001 244 FPSSHEEM 251 (259)
Q Consensus 244 ~~~~~~~~ 251 (259)
..+.+++.
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99976543
No 159
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=119.31 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=66.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.+.++|||+|||+++|+++|+++|+++..+.++....+|+++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4457899999999999999999999987433222223589999999999999999999998 78889999999997765
No 160
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=1.9e-17 Score=129.19 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=74.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|++||.+. .|.|+.+. +++++|||||+|.+.++|.+||+. |+..|+|+.|.|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIK-KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35678999999999999999999999999886 79998887 689999999999999999999997 9999999999999
Q ss_pred eCCH
Q 025001 245 PSSH 248 (259)
Q Consensus 245 ~~~~ 248 (259)
++.+
T Consensus 115 ~a~~ 118 (156)
T 1h2v_Z 115 WDAG 118 (156)
T ss_dssp EESC
T ss_pred ECCC
Confidence 9864
No 161
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.2e-17 Score=116.35 Aligned_cols=78 Identities=26% Similarity=0.298 Sum_probs=68.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45588999999999999999999999996 5556554 4 478999999999999999999998 688899999999976
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 53
No 162
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=2e-17 Score=117.42 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=68.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
..+.++|||+|||+++|+++|+++|+.|| +..+.+...+|+++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34478999999999999999999999996 55576665689999999999999999999998 68889999999997664
No 163
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=119.35 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=67.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.+.++|||+|||+++|+++|+++|++|+.+.+ +.+.+|+++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~-~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKV-PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEEC-CBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEE-EECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 455889999999999999999999999986632 234789999999999999999999998 78889999999997765
No 164
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=4.1e-17 Score=120.76 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=68.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++|+++|+++|+.|+ |.+|.++ ++ +|+++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999995 5667654 54 89999999999999999999996 688899999999976
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 102 a~ 103 (115)
T 2cpz_A 102 KR 103 (115)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 165
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=118.28 Aligned_cols=78 Identities=21% Similarity=0.262 Sum_probs=68.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh---CCCccCCeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK---DRMTLGSRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~---~~~~l~gr~i~V~ 244 (259)
.+.++|||+|||+++|+++|+++|++||.+. .|.++.+ +|||||+|.+.++|.+|++. ++..|.||.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~-~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVT-NILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEE-EEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 5678999999999999999999999999886 7777753 79999999999999999974 5788999999999
Q ss_pred eCCHHHH
Q 025001 245 PSSHEEM 251 (259)
Q Consensus 245 ~~~~~~~ 251 (259)
.+..+++
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9876543
No 166
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=119.64 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=68.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..|.+. ++ +|+++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45578999999999999999999999996 5556654 44 89999999999999999999998 688899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 92 a~ 93 (105)
T 1x5u_A 92 AS 93 (105)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 167
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=119.39 Aligned_cols=79 Identities=22% Similarity=0.316 Sum_probs=70.7
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+++|+++|+++|+.|+ .|.++.+. +++++|||||+|.+.++|.+||+. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~----~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV----RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS----EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe----EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999999999999999999999873 46777775 899999999999999999999986 9999999999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
.+.++
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98654
No 168
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=1.7e-17 Score=121.79 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=66.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEe
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~ 128 (259)
.+.+.++|||+|||+++|+++|+++|+.|| |..|.+. + .+|+++|||||+|.+.++|++||..++..++|+.|.|..
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 356688999999999999999999999996 4557665 4 379999999999999999999999888889999999976
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 101 a~ 102 (109)
T 2rs2_A 101 AF 102 (109)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 169
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=3.1e-18 Score=123.89 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=70.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
....+|||+|||+++|+++|+++|+.||.+.. +.+....+|+++|||||+|.+.++|.+||++|+..|+|+.|.|..+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 45789999999999999999999999998764 33333347899999999999999999999989999999999999886
Q ss_pred HH
Q 025001 248 HE 249 (259)
Q Consensus 248 ~~ 249 (259)
+.
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 170
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=117.92 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
..+.++|||+|||+++|+++|+++|+.|| |..+.+. +++|+++|||||+|.+.++|++||+ +++..++|+.|.|..+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34578999999999999999999999996 4556654 6679999999999999999999998 7888999999999665
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 171
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=118.16 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++|+++|+++|+.|| |..+.+. ++ +|+++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999996 4556654 44 89999999999999999999995 788899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 85 a~ 86 (99)
T 1whw_A 85 ST 86 (99)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 172
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=120.34 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=62.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
++|||+|||+++|+++|+++|++|| |..+.+... ++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 5899999999999999999999996 556666533 78999999999999999998 68889999999997765
No 173
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=121.85 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=69.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 51 ~~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
....+.++|||+|||+++|+++|+++|+.|| |..+.+....+.++|||||+|.+.++|++|++ +++..++|+.|.|..
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3455688999999999999999999999996 55677764445689999999999999999998 688899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 104 a~ 105 (109)
T 2err_A 104 AT 105 (109)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 174
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.5e-18 Score=122.95 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCC-ccceEEEe-eCC-CCCCceEEEEEEcCHHHHHHHHHh-C--CCccCCeEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVL-SEDSIHIT-MNS-DGRPTGEAFVEFANAEDSKAAMAK-D--RMTLGSRYI 241 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~-~~~~v~i~-~~~-~g~~~G~afV~F~~~~~A~~Al~~-~--~~~l~gr~i 241 (259)
...++|||+|||+++|+++|+++|+.||. +. .|.++ .+. +|+++|||||+|.+.++|.+|++. | +..++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~-~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVL-DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEE-EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCce-EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45789999999999999999999999997 65 77777 454 689999999999999999999986 6 589999999
Q ss_pred EEEeCCHH
Q 025001 242 ELFPSSHE 249 (259)
Q Consensus 242 ~V~~~~~~ 249 (259)
.|..+.+.
T Consensus 85 ~V~~a~~~ 92 (109)
T 2dis_A 85 AVDWAEPE 92 (109)
T ss_dssp EEEESCSS
T ss_pred EEEEcCCC
Confidence 99998754
No 175
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=7.9e-17 Score=117.18 Aligned_cols=78 Identities=14% Similarity=0.058 Sum_probs=68.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCC---eEEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGR---RYVEV 126 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~---r~i~v 126 (259)
..+.++|||+|||+++|+++|+++|+.|| |..+.+. +++|+++|||||+|.+.++|++||+ +++..+.+ +.|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34578999999999999999999999996 5556654 6789999999999999999999997 68887777 99999
Q ss_pred Eecc
Q 025001 127 FRSK 130 (259)
Q Consensus 127 ~~~~ 130 (259)
..+.
T Consensus 92 ~~a~ 95 (105)
T 2dnh_A 92 KFAD 95 (105)
T ss_dssp EESC
T ss_pred EECc
Confidence 7764
No 176
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=2.8e-17 Score=114.88 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=67.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+.+.++|||+|||+++|+++|+++|++|| +..+.+. + .+|+++|||||+|.+.++|++|++ +++..++|+.|.|..
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999996 5556543 4 689999999999999999999996 788899999999965
Q ss_pred c
Q 025001 129 S 129 (259)
Q Consensus 129 ~ 129 (259)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 4
No 177
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.8e-17 Score=118.00 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=69.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEE
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVF 127 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~ 127 (259)
...+.++|||+|||+++|+++|+++|+.|| |..|.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 355688999999999999999999999996 5556654 4 489999999999999999999998 78889999999997
Q ss_pred ecc
Q 025001 128 RSK 130 (259)
Q Consensus 128 ~~~ 130 (259)
.+.
T Consensus 91 ~a~ 93 (103)
T 2cq0_A 91 WAK 93 (103)
T ss_dssp ESS
T ss_pred ECC
Confidence 764
No 178
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=122.60 Aligned_cols=78 Identities=21% Similarity=0.359 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..|.++ + .+|+++|||||+|.+.++|++||+.++..++|+.|.|..+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34578999999999999999999999996 5567665 4 4799999999999999999999988888999999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 104 ~ 104 (116)
T 1x4b_A 104 V 104 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 179
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=115.09 Aligned_cols=76 Identities=21% Similarity=0.184 Sum_probs=67.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.++|||+|||+++|+++|+++|+.|| +.++.+. + .+|+++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 477999999999999999999999996 5556654 4 489999999999999999999998 68889999999997765
No 180
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.5e-18 Score=123.49 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=68.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCC-----eEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS-----RYI 241 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~g-----r~i 241 (259)
...++|||+|||+++|+++|+++|++||.+. .|.|+.+ |||||+|.+.++|++||+. |+..|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEE-EEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe-EEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 5678999999999999999999999999876 7888865 8999999999999999997 9999999 999
Q ss_pred EEEeCCHH
Q 025001 242 ELFPSSHE 249 (259)
Q Consensus 242 ~V~~~~~~ 249 (259)
.|..+.+.
T Consensus 86 ~V~~a~~~ 93 (108)
T 1x4c_A 86 RVKVDGPR 93 (108)
T ss_dssp EEEESSCC
T ss_pred EEEeCCCC
Confidence 99998764
No 181
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=1.2e-16 Score=119.80 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=70.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
.+...++|||+|||+++++++|+++|+.|| |..+.+. +++|+++|||||+|.+.++|++|++ +++..++|+.|.|..
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 356688999999999999999999999996 6667654 5689999999999999999999998 788899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 111 a~ 112 (124)
T 2kt5_A 111 VA 112 (124)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 182
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.4e-17 Score=116.67 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=67.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
..+.++|||+|||+++|+++|+++|+.|| |..|.++...+.++|||||+|.+.++|++||. +++..++|+.|.|..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 44578999999999999999999999996 55677664434589999999999999999997 68889999999997765
No 183
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=6.1e-17 Score=118.66 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=68.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++|++ +++..++|+.|.|..
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999996 4456554 4 579999999999999999999997 788899999999976
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 103 a~ 104 (108)
T 2jrs_A 103 VT 104 (108)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 184
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=116.55 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
.+.++|||+|||+++|+++|+++|+.|+ |..+.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3478999999999999999999999996 5556655 4 379999999999999999999998 7888999999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 83 ~ 83 (95)
T 2dnz_A 83 T 83 (95)
T ss_dssp S
T ss_pred c
Confidence 4
No 185
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.2e-17 Score=117.39 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=67.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
..+.++|||+|||+++|+++|+++|+.|| |..|.+....+.++|||||+|.+.++|++||. +++..+.|+.|.|..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 44578999999999999999999999996 55576665445579999999999999999998 78889999999997765
No 186
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=9.9e-18 Score=151.39 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||+.+|+++|.++|++||.|. .|.|+.+. +|.++|||||+|.+.++|.+||+. |+..|+|+.|.|.+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIK-RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCee-EEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567999999999999999999999999886 78888886 899999999999999999999977 99999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 8754
No 187
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=8.3e-18 Score=116.71 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=63.0
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCe-EEEE
Q 025001 56 FPVVRLRGLPFDC------TEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRR-YVEV 126 (259)
Q Consensus 56 ~~~vfV~nLp~~~------te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r-~i~v 126 (259)
+++|||+|||+++ |+++|+++|++|| |.++.+.+.+|+++|||||+|.+.++|++|+. +++..++|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4699999999999 7899999999997 44576666789999999999999999999998 688889998 8765
No 188
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=4.6e-17 Score=113.20 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=66.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
++|||+|||+++|+++|+++|+.|| +.++.+. + .+|+++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 5899999999999999999999996 5556554 5 589999999999999999999998 68889999999997765
No 189
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=119.53 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=67.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-C--CCccCCeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-D--RMTLGSRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~--~~~l~gr~i~V~ 244 (259)
.+.++|||+|||+++|+++|+++|++||.+. .|.++. .||||||+|.+.++|.+|++. | +..|+||.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~-~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTIC-YVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEE-EEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4678999999999999999999999999886 677764 378999999999999999975 4 456999999999
Q ss_pred eCCHHH
Q 025001 245 PSSHEE 250 (259)
Q Consensus 245 ~~~~~~ 250 (259)
.+..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 987654
No 190
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=5.7e-17 Score=119.94 Aligned_cols=80 Identities=20% Similarity=0.398 Sum_probs=72.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.++.+ +.++|||||+|.+.++|.+|++. ||..++|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIR-QIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4567999999999999999999999999886 7888754 56699999999999999999986 999999999999999
Q ss_pred CHHH
Q 025001 247 SHEE 250 (259)
Q Consensus 247 ~~~~ 250 (259)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8744
No 191
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=117.13 Aligned_cols=77 Identities=14% Similarity=0.277 Sum_probs=68.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|+.||.+. +.++. ++++|||||+|.+.++|.+|++. |+..|+|+.|.|..+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~--~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP--LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC--SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE--EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4578999999999999999999999999875 44553 47889999999999999999977 999999999999988
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.+.
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 192
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=119.80 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=66.3
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CC--CccCCeEEEE
Q 025001 168 VHTGILRLRGLPF-SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DR--MTLGSRYIEL 243 (259)
Q Consensus 168 ~~~~~i~V~nLp~-~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~--~~l~gr~i~V 243 (259)
.+.++|||+|||+ ++|++||+++|++||.+. .|.|+.+ +|||||+|.+.++|..|++. |+ ..|.||.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~-~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVIS-NHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEE-EEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEE-EEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4678999999999 999999999999999886 7888754 58999999999999999975 54 5699999999
Q ss_pred EeCCH
Q 025001 244 FPSSH 248 (259)
Q Consensus 244 ~~~~~ 248 (259)
..+..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 98864
No 193
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=118.22 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=68.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
..+.++|||+|||+++|+++|+++|+.|+ |.++.+. +++|+++|||||+|.+.++|++||+ +++..++|+.|.|..+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34478999999999999999999999996 5556654 6789999999999999999999998 7888999999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 92 ~ 92 (114)
T 2do0_A 92 E 92 (114)
T ss_dssp S
T ss_pred c
Confidence 4
No 194
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=7e-17 Score=117.88 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=68.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
..+.++|||+|||+++|+++|+++|+.|| |..+.++ +.+|+++|||||+|.+.++|++||+ +++..++|+.|.|..+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45578999999999999999999999996 4456554 6799999999999999999999998 6888999999999765
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
+
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 195
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.1e-17 Score=121.74 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=71.5
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcC----HHH----HHHHHH--h-CCC
Q 025001 171 GILRLRGL----PFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFAN----AED----SKAAMA--K-DRM 234 (259)
Q Consensus 171 ~~i~V~nL----p~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~----~~~----A~~Al~--~-~~~ 234 (259)
..|||+|| |+++++++|+++|+.||.|. ++.++.|+ ||+++|||||+|.+ +++ |.+|+. . |+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~-~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEIS-HFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCS-EEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE-EEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 99999999999999999886 89999999 89999999999996 433 788987 5 999
Q ss_pred ccCCeEEEEEeCCHHHHHHH
Q 025001 235 TLGSRYIELFPSSHEEMDEA 254 (259)
Q Consensus 235 ~l~gr~i~V~~~~~~~~~~~ 254 (259)
.|+||.|+|.+.......+.
T Consensus 82 ~I~Gr~irV~ln~~g~~~~~ 101 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSILNNI 101 (136)
T ss_dssp EETTEEEEEEECCTTHHHHH
T ss_pred eecCcEEEEEECcccHHHHH
Confidence 99999999999866554333
No 196
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=117.25 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEE-EEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDV-LFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v-~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
.+.++|||+|||+++|+++|+++|+.|| |..+ .+. + .+|+++|||||+|.+.++|++||. +++..++|+.|.|..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3478999999999999999999999996 4456 554 4 589999999999999999999998 788899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 83 a~ 84 (96)
T 1x5t_A 83 AF 84 (96)
T ss_dssp SC
T ss_pred ec
Confidence 65
No 197
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=120.97 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=69.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccc---eEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSED---SIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~---~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
..+.++|||+|||+++|+++|+++|+.||.+.. .+.+. +|+++|||||+|.+.++|.+||+. |+..|+|+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 356789999999999999999999999996631 23333 899999999999999999999987 99999999999
Q ss_pred EEeCCHH
Q 025001 243 LFPSSHE 249 (259)
Q Consensus 243 V~~~~~~ 249 (259)
|..+.+.
T Consensus 99 v~~a~~~ 105 (115)
T 2cpx_A 99 IEFGKNK 105 (115)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998754
No 198
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=122.60 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=70.3
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIM----DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~----~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
.+.++|||+|||+.+++++|+ ++|++||.+. .|.+. .+|+++|||||+|.+.++|..|++. ||..|.||.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~-~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDIL-DIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeE-EEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999876 6999999875 55553 4789999999999999999999987 99999999999
Q ss_pred EEeCCHHH
Q 025001 243 LFPSSHEE 250 (259)
Q Consensus 243 V~~~~~~~ 250 (259)
|..+....
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99987653
No 199
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=115.65 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=67.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
..+.++|||+|||+++|+++|+++|+.|| |..|.++ + .+|+++|||||+|.+.++|++||. ++..++|+.|.|..+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 45578999999999999999999999996 5556654 4 479999999999999999999998 467899999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 91 ~ 91 (103)
T 2cqg_A 91 N 91 (103)
T ss_dssp C
T ss_pred C
Confidence 5
No 200
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=2.1e-17 Score=119.45 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCC-eE
Q 025001 55 PFPVVRLRGLPF------DCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGR-RY 123 (259)
Q Consensus 55 ~~~~vfV~nLp~------~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~-r~ 123 (259)
.+++|||+|||+ ++++++|+++|++|| |.++.++ ++ +|+++|||||+|.+.++|++||+ +++..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 367999999999 999999999999996 5556654 54 69999999999999999999996 78889998 99
Q ss_pred EEEEecchHHH
Q 025001 124 VEVFRSKRQEY 134 (259)
Q Consensus 124 i~v~~~~~~~~ 134 (259)
|.|..+...+.
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99988875543
No 201
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=116.82 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=66.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
..+.++|||+|||+++|+++|+++|+.|+.+ .+.+ ..+++++|||||+|.+.++|++||+ +++..++++.|.|..+.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-CCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE-EECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 4457899999999999999999999999654 4555 3456789999999999999999995 78889999999997664
No 202
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-17 Score=114.43 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=67.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||.+. .|.++ +|||||+|.+.++|.+|++. |+..|+|+.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVL-ECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEE-EEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 5678999999999999999999999999886 67776 68999999999999999976 999999999999988
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.+.
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 203
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=5.6e-17 Score=120.39 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
.+.++|||+|||+++|+++|+++|+.|| |..|.+. +.+|+++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4478999999999999999999999996 5567655 5689999999999999999999997 68889999999997775
No 204
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8e-17 Score=118.77 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE---------EEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCC
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD---------VLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMG 120 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~---------v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~ 120 (259)
..+.++|||+|||+++|+++|+++|+.|+.+. |.+. + .+|+++|||||+|.+.++|++||+ +++..++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34578999999999999999999999997554 6654 5 589999999999999999999998 6888999
Q ss_pred CeEEEEEecc
Q 025001 121 RRYVEVFRSK 130 (259)
Q Consensus 121 ~r~i~v~~~~ 130 (259)
|+.|.|..+.
T Consensus 92 g~~l~V~~a~ 101 (113)
T 2cpe_A 92 GSKLKVSLAR 101 (113)
T ss_dssp TEECEEECSS
T ss_pred CCEEEEEECC
Confidence 9999997664
No 205
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=1.9e-17 Score=112.98 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=63.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEe
Q 025001 58 VVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128 (259)
Q Consensus 58 ~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~ 128 (259)
+|||+|||+++|+++|+++|++|| +.++.+. ++ +|+++|||||+|.+.++|++|+++++..++|+.|.|..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 589999999999999999999996 4556554 44 89999999999999999999999999999999999854
No 206
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=8.6e-17 Score=114.57 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=66.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++|++ +++..++|+.|.|..
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34578999999999999999999999996 4556665 4 368999999999999999999996 788899999999965
Q ss_pred c
Q 025001 129 S 129 (259)
Q Consensus 129 ~ 129 (259)
+
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 4
No 207
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=4.7e-17 Score=129.69 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=75.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+.+|+++|+++|+.||.+. .|.|+.+.+|+++|||||+|.+.++|.+||+. |+..|+|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLK-KAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCS-EEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4578999999999999999999999999885 89999888999999999999999999999997 999999999999988
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 208
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=119.22 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
..+.++|||+|||+++|+++|+++|+.|+ |..|.+. + .+|+++|||||+|.+.++|++||..++..++|+.|.|..+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 45578999999999999999999999996 5556654 4 4899999999999999999999988888899999999665
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 93 ~ 93 (105)
T 2dh8_A 93 T 93 (105)
T ss_dssp C
T ss_pred c
Confidence 4
No 209
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=118.41 Aligned_cols=76 Identities=20% Similarity=0.442 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|+.||.+. .+ ..+|+++|||||+|.+.++|.+|++. |+..|+|+.|.|..+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~-~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIR-LV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC-CE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE-Ee----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 5678999999999999999999999998664 23 45789999999999999999999996 999999999999988
Q ss_pred CH
Q 025001 247 SH 248 (259)
Q Consensus 247 ~~ 248 (259)
.+
T Consensus 89 ~~ 90 (96)
T 1fjc_A 89 GE 90 (96)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 210
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=118.62 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=68.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcC-CC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hcccc-CCCeEEEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHG-LD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQN-MGRRYVEVF 127 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~-~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~-~~~r~i~v~ 127 (259)
+.+.++|||+|||+++|+++|+++|+. || |..+.+. +++|+++|||||+|.+.++|++||+ +++.. ++|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 345789999999999999999999999 96 5566654 5699999999999999999999998 67888 999999986
Q ss_pred ecc
Q 025001 128 RSK 130 (259)
Q Consensus 128 ~~~ 130 (259)
.+.
T Consensus 86 ~a~ 88 (104)
T 2dhg_A 86 VAI 88 (104)
T ss_dssp BCC
T ss_pred Ecc
Confidence 654
No 211
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=119.08 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCe-EEE
Q 025001 55 PFPVVRLRGLPFDC------TEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRR-YVE 125 (259)
Q Consensus 55 ~~~~vfV~nLp~~~------te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r-~i~ 125 (259)
..++|||+|||+.+ |+++|+++|+.|| |..+.+.+.+|+++|||||+|.+.++|++||. +++..++|+ .|.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 36799999999999 7899999999996 55676666789999999999999999999998 688899998 999
Q ss_pred EEecc
Q 025001 126 VFRSK 130 (259)
Q Consensus 126 v~~~~ 130 (259)
|..+.
T Consensus 94 V~~a~ 98 (105)
T 2nlw_A 94 VNLFT 98 (105)
T ss_dssp EECSC
T ss_pred EEEcc
Confidence 97664
No 212
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=6.1e-17 Score=132.71 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=74.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.+.++|||+|||+++|+++|+++|++||.+. +|+|+.+. +|+++|||||+|.+.++|.+||+. |+..+.|+.|.|..
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPIL-SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEE-EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 4567999999999999999999999999886 89999887 799999999999999999999987 99999999999988
Q ss_pred CCHHH
Q 025001 246 SSHEE 250 (259)
Q Consensus 246 ~~~~~ 250 (259)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 76543
No 213
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=116.46 Aligned_cols=75 Identities=23% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccc--cCCCeEEEEE
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQ--NMGRRYVEVF 127 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~--~~~~r~i~v~ 127 (259)
...++++|||+|||+++|+++|+++|++|| |.++.++. ++|||||+|.+.++|.+|++ +++. .++||.|.|.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 345588999999999999999999999996 45566653 46899999999999999998 4544 3889999997
Q ss_pred ecc
Q 025001 128 RSK 130 (259)
Q Consensus 128 ~~~ 130 (259)
.+.
T Consensus 93 ~S~ 95 (100)
T 3r27_A 93 YST 95 (100)
T ss_dssp ECS
T ss_pred ecc
Confidence 765
No 214
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=116.90 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=68.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c--CCCCceeEEEEEeCCHHHHHHHHH-h-ccccCCCeEEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H--KNNKFTGEAFCVLGYPLQVDFALQ-R-NRQNMGRRYVEV 126 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~--~~g~~~G~afV~F~~~e~A~~Al~-~-~~~~~~~r~i~v 126 (259)
..+.++|||+|||+++|+++|+++|+.|| |..|.+. + .+|+++|||||+|.+.++|++||. + ++..++|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 34578999999999999999999999996 5556655 3 289999999999999999999998 5 788999999999
Q ss_pred Eecc
Q 025001 127 FRSK 130 (259)
Q Consensus 127 ~~~~ 130 (259)
..+.
T Consensus 92 ~~a~ 95 (107)
T 2cph_A 92 EWAD 95 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7765
No 215
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.5e-17 Score=115.84 Aligned_cols=77 Identities=16% Similarity=0.275 Sum_probs=69.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
..+.++|||+|||+++|+++|+++|++||.+. .|.+.. ++|||||+|.+.++|.+|++. |+..|+|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~-~v~~~~-----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAG-EVFIHK-----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCS-EEEEET-----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeE-EEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 35678999999999999999999999999885 788873 378999999999999999977 99999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.+.
T Consensus 86 a~~~ 89 (99)
T 2cpj_A 86 ACHS 89 (99)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8654
No 216
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=8.8e-17 Score=119.47 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=67.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEE
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVF 127 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~ 127 (259)
...+.++|||+|||+++|+++|+++|+.|| |.++.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 355688999999999999999999999997 4556665 4 478999999999999999999998 68888999999986
Q ss_pred ec
Q 025001 128 RS 129 (259)
Q Consensus 128 ~~ 129 (259)
.+
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 217
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.2e-17 Score=116.80 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..|.++ + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34578999999999999999999999996 5567654 4 478999999999999999999996 788899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 89 a~ 90 (102)
T 2cqb_A 89 AK 90 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 218
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.70 E-value=1.4e-16 Score=117.79 Aligned_cols=78 Identities=21% Similarity=0.177 Sum_probs=68.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++|+++|+++|+.|| |..|.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45688999999999999999999999996 5556654 4 489999999999999999999997 688889999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 92 a~ 93 (115)
T 2dgo_A 92 AT 93 (115)
T ss_dssp SS
T ss_pred cc
Confidence 65
No 219
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=8.6e-17 Score=111.90 Aligned_cols=76 Identities=11% Similarity=-0.018 Sum_probs=66.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchHH
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQE 133 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~~ 133 (259)
+.-|||+||++.+||++|+++|.++|.| ++.+.. ++|||||+|.++++|++|++ +|+..++||.|.|..++..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~ 82 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENE 82 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHH
Confidence 5699999999999999999999999755 566543 68999999999999999998 78889999999999887666
Q ss_pred HH
Q 025001 134 YY 135 (259)
Q Consensus 134 ~~ 135 (259)
+.
T Consensus 83 ~~ 84 (89)
T 2wbr_A 83 VQ 84 (89)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 220
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=5.9e-17 Score=114.17 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=66.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++|+.+++..++|+.|.|..+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 57999999999999999999999996 4556554 4 48999999999999999999999888899999999997764
No 221
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-17 Score=117.04 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=68.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+.+.++|||+|||+++|+++|+++|+.|+ |..+.+. + .+++++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999996 5567665 3 478999999999999999999995 788899999999976
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 89 a~ 90 (102)
T 1x5s_A 89 AG 90 (102)
T ss_dssp EE
T ss_pred CC
Confidence 64
No 222
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=117.60 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=68.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34578999999999999999999999996 5556654 4 369999999999999999999998 788899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 90 a~ 91 (103)
T 2dnm_A 90 AR 91 (103)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 223
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=3.3e-17 Score=120.53 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceE-EEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
+...++|||+|||+++|+++|+++|++|| .+. +.+.. ++++|||||+|.+.++|++||+ +++..++||.|.|..+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44578999999999999999999999998 444 55432 3588999999999999999997 7888999999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 4
No 224
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=7.4e-17 Score=115.49 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=67.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecch
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~ 131 (259)
+++|||+|||+++|+++|+++|+.|| |.++.+. + .+|+++|||||+|.+.++|++|++ +++..++|+.|.|..+..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 67999999999999999999999996 5556654 4 378999999999999999999996 788899999999987764
Q ss_pred H
Q 025001 132 Q 132 (259)
Q Consensus 132 ~ 132 (259)
.
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 3
No 225
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.2e-17 Score=115.22 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=67.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccC--CeEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLG--SRYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~--gr~i~V~ 244 (259)
.+.++|||+|||+++|+++|+++|++||.+. .|.+..+ +|||||+|.+.++|++|++. |+..|. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIR-TIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEE-EEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 4568999999999999999999999999886 6777643 78999999999999999986 999999 9999999
Q ss_pred eCCH
Q 025001 245 PSSH 248 (259)
Q Consensus 245 ~~~~ 248 (259)
.+.+
T Consensus 89 ~a~~ 92 (97)
T 1why_A 89 FAKS 92 (97)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8865
No 226
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.1e-17 Score=117.91 Aligned_cols=75 Identities=12% Similarity=0.236 Sum_probs=67.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.+. +++|||||+|.+.++|.+|+.. |+..|+|+.|.|..+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~-~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFIL-DFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCS-EEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEE-EEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3568999999999999999999999999886 78877 5689999999999999999977 999999999999887
Q ss_pred CH
Q 025001 247 SH 248 (259)
Q Consensus 247 ~~ 248 (259)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 227
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.69 E-value=8.7e-17 Score=129.38 Aligned_cols=83 Identities=20% Similarity=0.301 Sum_probs=75.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~ 245 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.++.++ +|+++|||||+|.+.++|.+||+.++..|+|+.|.|..
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLT-DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 35688999999999999999999999999886 78888886 79999999999999999999999999999999999998
Q ss_pred CCHHH
Q 025001 246 SSHEE 250 (259)
Q Consensus 246 ~~~~~ 250 (259)
+....
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 86543
No 228
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=111.40 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=67.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHH-h-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMA-K-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~-~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||+++|+++|+++|++||.+. .|.+.. ++|||||+|.+.++|.+|++ + |+..++|+.|.|..
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~-~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIR-TITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEE-EEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEe-EEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 5678999999999999999999999999876 788875 47899999999999999998 5 89999999999987
Q ss_pred CC
Q 025001 246 SS 247 (259)
Q Consensus 246 ~~ 247 (259)
+.
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 229
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.1e-17 Score=115.60 Aligned_cols=78 Identities=12% Similarity=0.070 Sum_probs=67.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ce-EEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeE----
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IV-DVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRY---- 123 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv-~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~---- 123 (259)
..+.++|||+|||+++|+++|+++|+.|| ++ .+.+. ++ +|+++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34578999999999999999999999996 66 76654 54 89999999999999999999998 6888899998
Q ss_pred EEEEecc
Q 025001 124 VEVFRSK 130 (259)
Q Consensus 124 i~v~~~~ 130 (259)
|.|..+.
T Consensus 86 l~v~~a~ 92 (99)
T 2div_A 86 FKLNYAT 92 (99)
T ss_dssp CCEEETT
T ss_pred EEEeecC
Confidence 8886654
No 230
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=1.1e-17 Score=119.95 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=71.5
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIM----DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~----~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
.+.++|||+|||+++|+++|+ ++|++||.+. .|.+. .+|.++|||||+|.+.++|.+|++. |+..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~-~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQIL-DILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEE-EEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE-EEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 467899999999999999999 9999999875 66665 3678899999999999999999987 99999999999
Q ss_pred EEeCCHHH
Q 025001 243 LFPSSHEE 250 (259)
Q Consensus 243 V~~~~~~~ 250 (259)
|..+.+..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99987653
No 231
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=116.64 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=67.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hc------cccCCCe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RN------RQNMGRR 122 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~------~~~~~~r 122 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..|.++ + .+|+++|||||+|.+.++|++||+ ++ +..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 44578999999999999999999999996 5556654 4 478999999999999999999998 56 7889999
Q ss_pred EEEEEecc
Q 025001 123 YVEVFRSK 130 (259)
Q Consensus 123 ~i~v~~~~ 130 (259)
.|.|..+.
T Consensus 92 ~l~v~~a~ 99 (111)
T 1x4h_A 92 QLKVDLAV 99 (111)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
Confidence 99997664
No 232
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-17 Score=121.02 Aligned_cols=79 Identities=9% Similarity=0.006 Sum_probs=67.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEec-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
.+.+.++|||+|||+++|+++|+++|+.|+.+ .+++.+ .+|+++|||||+|.+.++|++||++++..++|+.|.|..+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 34557899999999999999999999999643 433333 5789999999999999999999998888999999999766
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 93 ~ 93 (101)
T 1fj7_A 93 K 93 (101)
T ss_dssp S
T ss_pred C
Confidence 4
No 233
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=5.9e-17 Score=115.93 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=66.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
..+.++|||+|||+++|+++|+++|+.|+.+.++ ..+|+++|||||+|.+.++|++|+. +++..++|+.|.|..+.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 3457899999999999999999999999655433 6689999999999999999999998 78888999999997764
No 234
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-17 Score=114.31 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=64.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVF 127 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~ 127 (259)
.+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++|++ +++..++|+.|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 3478999999999999999999999996 5556654 4 479999999999999999999998 78889999988764
No 235
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-18 Score=128.01 Aligned_cols=82 Identities=21% Similarity=0.348 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccce--------EEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS--------IHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG 237 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~--------v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~ 237 (259)
.+.++|||+|||+++|+++|+++|+.||.+. . |.++.++ +|+++|||||+|.+.++|.+||+. |+..|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIK-TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 4567899999999999999999999999875 5 7888875 799999999999999999999986 999999
Q ss_pred CeEEEEEeCCHHH
Q 025001 238 SRYIELFPSSHEE 250 (259)
Q Consensus 238 gr~i~V~~~~~~~ 250 (259)
|+.|.|..+.++.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999987765
No 236
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.6e-17 Score=115.85 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=66.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CC-CccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DR-MTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~-~~l~gr~i~V~~ 245 (259)
...++|||+|||+++|+++|+++|++||.+...+.+. ++|||||+|.+.++|.+|++. |+ ..|+|+.|.|..
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4567899999999999999999999999733355553 578999999999999999986 99 999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.++
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 8654
No 237
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-16 Score=116.74 Aligned_cols=78 Identities=18% Similarity=0.348 Sum_probs=67.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
..+.++|||+|||+++|+++|+++|+.|+ |..|.+. + .+++++|||||+|.+.++|++||+..+..+.++.|.|..+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 44578999999999999999999999996 5567665 4 4799999999999999999999986555899999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 94 ~ 94 (116)
T 2cqd_A 94 Y 94 (116)
T ss_dssp T
T ss_pred c
Confidence 4
No 238
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.4e-16 Score=116.80 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=68.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
....++|||+|||+++|+++|+++|++||.+. .|.+. +|||||+|.+.++|.+|++. |+..|+|+.|.|..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMK-EVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCC-EEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35678999999999999999999999999885 77777 78999999999999999987 99999999999999
Q ss_pred CCHH
Q 025001 246 SSHE 249 (259)
Q Consensus 246 ~~~~ 249 (259)
+.+.
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 8654
No 239
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.1e-17 Score=111.84 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=63.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
++|||+|||+++|+++|+++|++|| +..+.+. + .+|+++|||||+|.+.++|++|++..+..++|+.|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999996 5556655 4 3799999999999999999999996668899999998654
No 240
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7e-17 Score=118.61 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=66.8
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh---CCCccCCeEEE
Q 025001 167 AVHTGILRLRGLPFS-AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK---DRMTLGSRYIE 242 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~-~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~---~~~~l~gr~i~ 242 (259)
..+.++|||+|||++ +|+++|+++|++||.+. .|.|+ +++|||||+|.+.++|..|++. ++..|.||.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~-~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIK-NYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCS-EEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEE-EEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 356789999999998 99999999999999886 78876 3579999999999999999974 45679999999
Q ss_pred EEeCCH
Q 025001 243 LFPSSH 248 (259)
Q Consensus 243 V~~~~~ 248 (259)
|..+..
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 998864
No 241
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=1.9e-16 Score=113.73 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=66.9
Q ss_pred CCCccEEEEcCCCC-CCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEE
Q 025001 167 AVHTGILRLRGLPF-SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELF 244 (259)
Q Consensus 167 ~~~~~~i~V~nLp~-~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~ 244 (259)
....++|||+|||+ ++|+++|+++|+.||.+. .|.+ ++|||||+|.+.++|.+|++. |+..++|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~-~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEE-EEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35678999999998 999999999999999875 6776 378999999999999999986 9999999999999
Q ss_pred eCCH
Q 025001 245 PSSH 248 (259)
Q Consensus 245 ~~~~ 248 (259)
.+..
T Consensus 91 ~a~~ 94 (97)
T 2xnq_A 91 VSSS 94 (97)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8864
No 242
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=120.55 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=66.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVA----EFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVF 127 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~----~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~ 127 (259)
.+.++|||+|||+++++++|+ ++|++|| |++|.+ ..+|+++|||||+|.+.++|++|+. +++..+.|+.|.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i-~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV-DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE-CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe-ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 447899999999999999976 6999997 445554 4578999999999999999999996 78889999999998
Q ss_pred ecch
Q 025001 128 RSKR 131 (259)
Q Consensus 128 ~~~~ 131 (259)
.+..
T Consensus 106 ~a~~ 109 (127)
T 2a3j_A 106 FSET 109 (127)
T ss_dssp ECCC
T ss_pred EccC
Confidence 7753
No 243
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=113.19 Aligned_cols=76 Identities=26% Similarity=0.296 Sum_probs=66.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccC--CCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 166 SAVHTGILRLRGLPFSAGKDDIMDFFKDF--VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 166 ~~~~~~~i~V~nLp~~~te~dl~~~F~~~--g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
.....++|||+|||+++|+++|+++|++| |.+. .|.+. +|||||+|.+.++|.+||+. |+..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~-~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE-RVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEE-EEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceE-EEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 7664 55543 67999999999999999986 99999999999
Q ss_pred EEeCCHH
Q 025001 243 LFPSSHE 249 (259)
Q Consensus 243 V~~~~~~ 249 (259)
|..+.+.
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9998654
No 244
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=5.6e-17 Score=117.18 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHH
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHE 249 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~ 249 (259)
++|||+|||+++|+++|+++|++||.+. .|.++.+ ++|||||+|.+.++|.+|++. |+..++|+.|.|..+.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLR-TVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCS-EEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 4799999999999999999999999885 7888876 789999999999999999986 999999999999998654
No 245
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.68 E-value=1.2e-16 Score=120.82 Aligned_cols=79 Identities=27% Similarity=0.279 Sum_probs=68.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEE
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVF 127 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~ 127 (259)
.+.+.++|||+|||+++|+++|+++|+.|| |..|.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 356688999999999999999999999996 5567655 4 478999999999999999999998 78889999999996
Q ss_pred ecc
Q 025001 128 RSK 130 (259)
Q Consensus 128 ~~~ 130 (259)
.+.
T Consensus 122 ~a~ 124 (129)
T 2kxn_B 122 FSI 124 (129)
T ss_dssp CCS
T ss_pred Eec
Confidence 553
No 246
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1.2e-16 Score=112.57 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=65.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
..++|||+|||+++|+++|+++|++| .+. .+.+. +++|||||+|.+.++|.+|++. |+..++||.|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~-~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLK-YCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCC-CEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeE-EEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 554 67774 6899999999999999999986 9999999999999885
Q ss_pred H
Q 025001 248 H 248 (259)
Q Consensus 248 ~ 248 (259)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 247
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=114.44 Aligned_cols=77 Identities=21% Similarity=0.166 Sum_probs=66.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC----CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK----NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEV 126 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~----~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v 126 (259)
.+.++|||+|||+++|+++|+++|+.|| |..+.+. ++ +++++|||||+|.+.++|++||+ +++..++|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3478999999999999999999999996 5556554 32 44899999999999999999998 6888999999999
Q ss_pred Eecc
Q 025001 127 FRSK 130 (259)
Q Consensus 127 ~~~~ 130 (259)
..+.
T Consensus 83 ~~a~ 86 (98)
T 2cpf_A 83 RISE 86 (98)
T ss_dssp ECSS
T ss_pred EEcc
Confidence 7764
No 248
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.8e-17 Score=117.97 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=62.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hc--cccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RN--RQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~--~~~~~~r~i~v~~ 128 (259)
+.+.++|||+|||+++||++|+++|++|| |.+|.++.. +|||||+|.+.++|++|++ ++ +..+.||.|.|..
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45578999999999999999999999996 556776632 6999999999999999998 44 3579999999966
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 89 A~ 90 (105)
T 1sjq_A 89 SN 90 (105)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 249
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=116.01 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=63.2
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hc--cccCCCeEEEEE
Q 025001 53 PPPFPVVRLRGLPFD-CTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RN--RQNMGRRYVEVF 127 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~-~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~--~~~~~~r~i~v~ 127 (259)
..+.++|||+|||++ +|+++|+++|++|| |.+|.++ +++|||||+|.+.++|++|++ ++ +..+.||.|.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456889999999998 99999999999996 6677775 357999999999999999997 33 346899999997
Q ss_pred ecc
Q 025001 128 RSK 130 (259)
Q Consensus 128 ~~~ 130 (259)
.+.
T Consensus 98 ~a~ 100 (112)
T 1x4f_A 98 LSE 100 (112)
T ss_dssp EEC
T ss_pred ECc
Confidence 764
No 250
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=114.87 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
.+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|..+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4478999999999999999999999996 4556654 4 479999999999999999999998 7888999999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 101 ~ 101 (106)
T 1p27_B 101 F 101 (106)
T ss_dssp E
T ss_pred c
Confidence 4
No 251
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=2.4e-16 Score=123.21 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=72.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
.++|||+|||+++|+++|+++|+.||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. |+..++|+.|.|..+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIE-SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeE-EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 57899999999999999999999999886 78998888 899999999999999999999986 9999999999998876
Q ss_pred H
Q 025001 248 H 248 (259)
Q Consensus 248 ~ 248 (259)
+
T Consensus 81 ~ 81 (167)
T 1fxl_A 81 P 81 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 252
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=7.3e-17 Score=124.06 Aligned_cols=81 Identities=16% Similarity=0.251 Sum_probs=69.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccce-----EEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDS-----IHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYI 241 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~-----v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i 241 (259)
.+..+|||+|||+++|+++|+++|+.||.+... +.+....+|+++|||||+|.+.++|.+||.. |+..|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 567899999999999999999999999977521 1222234799999999999999999999986 9999999999
Q ss_pred EEEeCCH
Q 025001 242 ELFPSSH 248 (259)
Q Consensus 242 ~V~~~~~ 248 (259)
.|..+..
T Consensus 123 ~V~~a~~ 129 (143)
T 3egn_A 123 VVQFARS 129 (143)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999843
No 253
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=1.9e-16 Score=127.88 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=72.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCCH
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSSH 248 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~~ 248 (259)
..++|||+|||+++|+++|+++|++||.+. .|+|+.+.+|+++|||||+|.+.++|.+||+..+..++||.|.|.....
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVL-NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEE-EEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEE-EEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 457999999999999999999999999886 8999999999999999999999999999998866799999999987643
No 254
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=116.66 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=69.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.++.+ +|||||+|.+.++|.+|++. |+..|+|+.|.|..+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIM-EIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEE-EEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 4578999999999999999999999999876 7888765 78999999999999999976 999999999999998
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.+.
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 255
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=1.7e-16 Score=115.07 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=67.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
.+.++|||+|||+++|+++|+++|++||.+. .|.++ +|||||+|.+.++|.+||+. |+..|+|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~-~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLE-RVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEE-EEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 5678999999999999999999999999876 67776 46999999999999999986 999999999999998
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.+.
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 256
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.6e-17 Score=115.16 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=65.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+...++|||+|||+++|+++|+++|+.||.+.+.++ .++++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLT--WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEE--EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEE--cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 344789999999999999999999999986654433 24788999999999999999996 68889999999997664
No 257
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4e-16 Score=112.80 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=62.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHh---ccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR---NRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~---~~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++|+++|+++|++|| |.+|.++.. +|||||+|.+.++|++|++. ++..+.|+.|.|..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 34578999999999999999999999996 555766532 79999999999999999973 34569999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 88 a~ 89 (101)
T 2cq1_A 88 SN 89 (101)
T ss_dssp CS
T ss_pred cC
Confidence 65
No 258
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-16 Score=110.57 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=67.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||.+. .|.++ +|||||+|.+.++|.+|++. |+..|+|+.|.|..+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVI-ECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCC-EEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 5678999999999999999999999999875 78876 34999999999999999976 999999999999998
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.+.
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 259
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=112.20 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=67.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||.+. .|.++ +|||||+|.+.++|.+|++. |+..|+|+.|.|..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVI-ECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEE-EEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEE-EEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4678899999999999999999999999875 77776 34999999999999999986 999999999999998
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.+.
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 260
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-16 Score=119.69 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=69.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEE
Q 025001 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEV 126 (259)
Q Consensus 51 ~~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v 126 (259)
..+.+.++|||+|||+++|+++|+++|+.|| |.+|.++ + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456688999999999999999999999996 5556554 4 478999999999999999999998 6888999999999
Q ss_pred Eecc
Q 025001 127 FRSK 130 (259)
Q Consensus 127 ~~~~ 130 (259)
..+.
T Consensus 117 ~~a~ 120 (139)
T 1u6f_A 117 ALAA 120 (139)
T ss_dssp EESS
T ss_pred EECC
Confidence 7765
No 261
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=1.5e-16 Score=115.84 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=67.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccC---CCeEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNM---GRRYVE 125 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~---~~r~i~ 125 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..|.++ + .+|+++|||||+|.+.++|++||+ +++..+ .++.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 44578999999999999999999999996 5667655 4 379999999999999999999997 777776 889999
Q ss_pred EEecc
Q 025001 126 VFRSK 130 (259)
Q Consensus 126 v~~~~ 130 (259)
|..+.
T Consensus 90 v~~a~ 94 (106)
T 2dgp_A 90 VKPAD 94 (106)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 97764
No 262
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=2.7e-17 Score=112.25 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=62.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEe
Q 025001 58 VVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128 (259)
Q Consensus 58 ~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~ 128 (259)
+|||+|||+++|+++|+++|++|| +.++.+. + .+|+++|||||+|.+.++|++|++.++..++|+.|.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 599999999999999999999996 4456554 4 478999999999999999999999988899999998854
No 263
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-16 Score=115.78 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=66.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceE-E--EEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVD-V--LFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v--~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++|+++|+++|+.||.+. + .+...+|+++|||||+|.+.++|++||. +++..++|+.|.|..
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44578999999999999999999999996442 2 1222389999999999999999999997 688889999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 102 a~ 103 (115)
T 2cpx_A 102 GK 103 (115)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 264
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=2.2e-16 Score=111.23 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
...++|||+|||+++|+++|+++|++|.+.++.+. +++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSSCCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34679999999999999999999999966667663 788999999999999999998 78889999999997653
No 265
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=9.3e-17 Score=118.26 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=67.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|||+++|+++|+++|++||.+. .|.|+ .++|||||+|.+.++|.+||+. |+..|+||.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~v~i~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLG-RVLLP-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEECC-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEe-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3567999999999999999999999999875 67766 3678999999999999999987 999999999999887
Q ss_pred CH
Q 025001 247 SH 248 (259)
Q Consensus 247 ~~ 248 (259)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 54
No 266
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=1.5e-16 Score=112.48 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=61.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
.+..+|||+|||+++|+++|+++|++||.+. .|.|+.+ ++|||||+|.+.++|.++ ......++|+.|.|..+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~-~v~i~~~----srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVV-DVFIPKP----FRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEE-EEECCSS----CCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEE-EEEEeeC----CCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEcC
Confidence 5678999999999999999999999999886 7888764 789999999999999842 222334569999999998
Q ss_pred HHH
Q 025001 248 HEE 250 (259)
Q Consensus 248 ~~~ 250 (259)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 765
No 267
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=4.5e-16 Score=114.22 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=66.5
Q ss_pred CCccEEEEcCCCCC-CCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFS-AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~-~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||++ +|+++|+++|++||.+. .|.+ ++|||||+|.+.++|.+|++. |+..|+|+.|.|..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~-~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVA-GCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCS-EEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeE-EEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45689999999999 99999999999999876 6777 578999999999999999976 99999999999999
Q ss_pred CCH
Q 025001 246 SSH 248 (259)
Q Consensus 246 ~~~ 248 (259)
+.+
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 863
No 268
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-15 Score=111.99 Aligned_cols=78 Identities=9% Similarity=0.125 Sum_probs=66.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccC--------CC
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNM--------GR 121 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~--------~~ 121 (259)
..+.++|||+|||+++|+++|+++|+.|| |..+.++ +++|+++|||||+|.+.++|++||+ +++..+ .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 34578999999999999999999999996 5566654 5699999999999999999999998 788878 46
Q ss_pred eEEEEEecc
Q 025001 122 RYVEVFRSK 130 (259)
Q Consensus 122 r~i~v~~~~ 130 (259)
++|.|..+.
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 777776553
No 269
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=115.80 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHH---HHhcCCC-ceEEEEe-cC----CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVA---EFFHGLD-IVDVLFV-HK----NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRY 123 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~---~~F~~~~-iv~v~~~-~~----~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~ 123 (259)
...++|||+|||+++++++|+ ++|++|| |.++.+. +. .++++|||||+|.+.++|++||+ +++..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 347799999999999999999 9999996 5567665 32 23677999999999999999998 5888999999
Q ss_pred EEEEecc
Q 025001 124 VEVFRSK 130 (259)
Q Consensus 124 i~v~~~~ 130 (259)
|.|..+.
T Consensus 93 l~V~~a~ 99 (111)
T 2cpi_A 93 LKASLGT 99 (111)
T ss_dssp EEEESCC
T ss_pred EEEEecc
Confidence 9997765
No 270
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=3.1e-16 Score=114.84 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=64.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 51 ~~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
....+.++|||+|||+++|+++|+++|++|| |..+.+. +|||||+|.+.++|++|+. +++..++|+.|.|..
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456688999999999999999999999996 5566666 6899999999999999997 688899999999976
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 100 a~ 101 (108)
T 2jvo_A 100 SK 101 (108)
T ss_dssp CS
T ss_pred ec
Confidence 64
No 271
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=8.3e-16 Score=111.95 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=73.7
Q ss_pred CCccEEEEcCCCC-----CCCHHHHHHHhccCCCccceEEEeeCC--CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCe
Q 025001 168 VHTGILRLRGLPF-----SAGKDDIMDFFKDFVLSEDSIHITMNS--DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSR 239 (259)
Q Consensus 168 ~~~~~i~V~nLp~-----~~te~dl~~~F~~~g~~~~~v~i~~~~--~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr 239 (259)
.++++|+|+||.. +-+++||+++|++||.+. .|.|+.++ +++++|||||+|.+.++|.+|++. ||..++||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~-~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVG-KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEE-EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEE-EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4678999999962 247899999999999886 78998876 368999999999999999999987 99999999
Q ss_pred EEEEEeCCHHHHH
Q 025001 240 YIELFPSSHEEMD 252 (259)
Q Consensus 240 ~i~V~~~~~~~~~ 252 (259)
.|.|..+....+.
T Consensus 85 ~i~v~~a~~~~f~ 97 (105)
T 2pe8_A 85 VVKACFYNLDKFR 97 (105)
T ss_dssp ECEEEECCHHHHH
T ss_pred EEEEEEcCHHHhh
Confidence 9999999987765
No 272
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6e-16 Score=113.26 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=63.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCC-----eEEEE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGR-----RYVEV 126 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~-----r~i~v 126 (259)
...++|||+|||+++|+++|+++|+.|+ |..+.+... |||||+|.+.++|++||+ +++..+.+ +.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4478999999999999999999999996 556766533 899999999999999998 68888988 99999
Q ss_pred Eecc
Q 025001 127 FRSK 130 (259)
Q Consensus 127 ~~~~ 130 (259)
..+.
T Consensus 88 ~~a~ 91 (108)
T 1x4c_A 88 KVDG 91 (108)
T ss_dssp EESS
T ss_pred EeCC
Confidence 7765
No 273
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=121.43 Aligned_cols=77 Identities=18% Similarity=0.122 Sum_probs=66.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCce-E--EEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccc----cCCCe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV-D--VLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQ----NMGRR 122 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~--v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~----~~~~r 122 (259)
....++|||+|||+++||++|+++|+.||.+ . |.|+ ++ +|+++|||||+|.+. +|.+||. +++. .++||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 3457799999999999999999999999644 3 5544 55 899999999999999 9999997 6787 89999
Q ss_pred EEEEEecc
Q 025001 123 YVEVFRSK 130 (259)
Q Consensus 123 ~i~v~~~~ 130 (259)
.|.|..+.
T Consensus 99 ~l~V~~a~ 106 (131)
T 2m2b_A 99 TINVEFAK 106 (131)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 99997664
No 274
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.5e-16 Score=113.18 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=61.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hcc--ccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNR--QNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~--~~~~~r~i~v~~~ 129 (259)
.+.++|||+|||+++||++|+++|++|| |.+|.++. .+|||||+|.+.++|++|++ +++ ..++|+.|.|..+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4478999999999999999999999996 55566653 26899999999999999997 443 3589999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 89 ~ 89 (104)
T 1wex_A 89 T 89 (104)
T ss_dssp S
T ss_pred c
Confidence 5
No 275
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=113.51 Aligned_cols=79 Identities=19% Similarity=0.324 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 467999999999999999999999996 5566654 4 489999999999999999999997 78889999999998876
Q ss_pred hHH
Q 025001 131 RQE 133 (259)
Q Consensus 131 ~~~ 133 (259)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 543
No 276
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=7.2e-17 Score=116.84 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=66.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
+.++|||+|||+++|+++|+++|+.|| |..+.+. +++|+++|||||+|.+.++|++|+. ++..++|+.|.|..+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 468999999999999999999999996 4556554 5699999999999999999999999 8889999999986664
No 277
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=3.3e-16 Score=114.92 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
.+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++||. +++..++|+.|.|..+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4578999999999999999999999996 4456654 4 489999999999999999999998 7888999999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 104 ~ 104 (110)
T 1oo0_B 104 F 104 (110)
T ss_dssp E
T ss_pred c
Confidence 4
No 278
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.7e-16 Score=111.90 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=65.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVA----EFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEV 126 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~----~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v 126 (259)
.+.++|||+|||+++|+++|+ ++|++|| |.+|.+. ++.+ +|||||+|.+.++|++||+ +++..++|+.|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 346799999999999999999 9999997 5567665 4444 8999999999999999998 7888999999999
Q ss_pred Eecc
Q 025001 127 FRSK 130 (259)
Q Consensus 127 ~~~~ 130 (259)
..+.
T Consensus 85 ~~a~ 88 (96)
T 2dgx_A 85 SLAT 88 (96)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7664
No 279
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.8e-16 Score=122.78 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCH
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSH 248 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~ 248 (259)
++|||+|||+++|+++|+++|++||.+. .|.++.+++|+++|||||+|.+.++|.+|++. |+..+.|+.|.|..+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIA-NIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEE-EEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeE-EEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 4799999999999999999999999886 89999999999999999999999999999966 99999999999988743
No 280
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=3.4e-16 Score=117.32 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
+.++|||+|||+++|+++|+++|+.|| |.+|.+. + .+|+++|||||+|.+.++|++||++++..++|+.|.|..+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 478999999999999999999999996 5556654 4 58999999999999999999999888889999999997664
No 281
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=2.8e-16 Score=123.22 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=72.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
+.++|||+|||+++|+++|+++|+.||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. |+..++|+.|.|..+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPIN-TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEE-EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 457899999999999999999999999886 78888776 899999999999999999999986 999999999999987
Q ss_pred CH
Q 025001 247 SH 248 (259)
Q Consensus 247 ~~ 248 (259)
.+
T Consensus 81 ~~ 82 (168)
T 1b7f_A 81 RP 82 (168)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 282
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=116.91 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=63.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHh-c--cccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR-N--RQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~-~--~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++||++|+++|++|| |.+|.++. .+|||||+|.+.++|++|++. + +..+.|+.|.|..
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~----~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG----GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 34578999999999999999999999996 66677663 279999999999999999984 3 3479999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 104 a~ 105 (119)
T 2ad9_A 104 SN 105 (119)
T ss_dssp CS
T ss_pred cc
Confidence 75
No 283
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=113.51 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=62.2
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hcc--ccCCCeEEEEE
Q 025001 53 PPPFPVVRLRGLPF-DCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNR--QNMGRRYVEVF 127 (259)
Q Consensus 53 ~~~~~~vfV~nLp~-~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~--~~~~~r~i~v~ 127 (259)
+.+.++|||+|||+ ++|++||+++|++|| |.+|.++. .+|||||+|++.++|++||+ +++ ..+.||.|.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 34578999999999 999999999999996 55677653 35899999999999999997 443 34899999997
Q ss_pred ecc
Q 025001 128 RSK 130 (259)
Q Consensus 128 ~~~ 130 (259)
.+.
T Consensus 88 ~a~ 90 (102)
T 1x4d_A 88 LSQ 90 (102)
T ss_dssp EEC
T ss_pred ECC
Confidence 764
No 284
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4e-16 Score=111.26 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=66.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
...++|||+|||+++|+++|+++|+.||.+. .| +....+|+ ||||+|.+.++|.+||++|+..|+|+.|.|..+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~-~v-~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVA-SV-VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEE-EE-EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EE-EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 3567999999999999999999999999886 45 33333555 9999999999999999999999999999998876
Q ss_pred HH
Q 025001 248 HE 249 (259)
Q Consensus 248 ~~ 249 (259)
+.
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 285
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.6e-16 Score=112.73 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=65.8
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPF-SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~-~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.+.++|||+|||+ ++|+++|+++|++||.+. .|.+. +|||||+|.+.++|.+|++. |+..+.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~-~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM-QINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCC-EEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 5678999999999 999999999999999886 67773 78999999999999999986 99999999999988
Q ss_pred CCH
Q 025001 246 SSH 248 (259)
Q Consensus 246 ~~~ 248 (259)
+.+
T Consensus 80 a~~ 82 (96)
T 2kvi_A 80 SSS 82 (96)
T ss_dssp EEC
T ss_pred cCc
Confidence 743
No 286
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=117.92 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=67.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEE
Q 025001 51 SQPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEV 126 (259)
Q Consensus 51 ~~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v 126 (259)
....+.++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3455688999999999999999999999996 4456654 4 479999999999999999999996 7888899999998
Q ss_pred Ee
Q 025001 127 FR 128 (259)
Q Consensus 127 ~~ 128 (259)
..
T Consensus 138 ~~ 139 (140)
T 2ku7_A 138 NL 139 (140)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 287
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=109.98 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=64.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCC-ceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNK-FTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~-~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
.++|||+|||+++|+++|+++|+.|| +..+.+. +. ++. ++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 57999999999999999999999996 4456543 33 344 89999999999999999998 68999999999997654
No 288
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=4.4e-16 Score=117.01 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++|+++|+++|+.|| |..|.++ ++ +|.++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34478999999999999999999999996 5556654 43 89999999999999999999997 788999999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 99 a~ 100 (126)
T 3ex7_B 99 CF 100 (126)
T ss_dssp SE
T ss_pred ec
Confidence 64
No 289
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=7e-16 Score=110.73 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=63.2
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhcCCCc-eEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPF-DCTEVDVAEFFHGLDI-VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~-~~te~~L~~~F~~~~i-v~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
+.+.++|||+|||+ ++|+++|+++|+.||. ..+.+ ++|||||+|.+.++|++|+. +++..++|+.|.|..+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 55688999999998 9999999999999964 45665 27999999999999999998 7888899999999765
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 93 ~ 93 (97)
T 2xnq_A 93 S 93 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 290
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=115.53 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=59.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-C---CCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D---GRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIEL 243 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~---g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V 243 (259)
...++|||+|||+++|+++|+++|++||.+. +.++.+. + |+++|||||+|.+.++|++||+.- ..++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEe
Confidence 4567899999999999999999999999885 6666655 4 799999999999999999999762 1244554444
Q ss_pred E
Q 025001 244 F 244 (259)
Q Consensus 244 ~ 244 (259)
.
T Consensus 83 ~ 83 (114)
T 2dnl_A 83 V 83 (114)
T ss_dssp E
T ss_pred c
Confidence 3
No 291
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=4.4e-16 Score=129.07 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC---ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD---IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~---iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
..++|||+|||+++||++|+++|+.|+ |++|.|+ + .+|+++|||||+|.+.++|++||+ +++..|+|+.|.|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 577999999999999999999999998 5556554 5 499999999999999999999998 788899999999998
Q ss_pred cchHHH
Q 025001 129 SKRQEY 134 (259)
Q Consensus 129 ~~~~~~ 134 (259)
+.....
T Consensus 147 a~~~~~ 152 (229)
T 3q2s_C 147 VNKQFL 152 (229)
T ss_dssp CCHHHH
T ss_pred CCCCcc
Confidence 876554
No 292
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=109.01 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=63.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..+.+. +|||||+|.+.++|++|+. +++..++|+.|.|..+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 34578999999999999999999999996 4556665 5899999999999999996 78888999999997664
No 293
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=2.2e-16 Score=113.12 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=66.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHhcCCCce-EEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVA----EFFHGLDIV-DVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVF 127 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~----~~F~~~~iv-~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~ 127 (259)
.+.++|||+|||+++|+++|+ ++|+.||.+ .+.+. .+|+++|||||+|.+.++|++|+. +++..++|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS-RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC-HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE-cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 347899999999999999999 999999754 45554 467889999999999999999997 68889999999997
Q ss_pred ecc
Q 025001 128 RSK 130 (259)
Q Consensus 128 ~~~ 130 (259)
.+.
T Consensus 85 ~a~ 87 (97)
T 1nu4_A 85 YAK 87 (97)
T ss_dssp ECS
T ss_pred Ecc
Confidence 765
No 294
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.64 E-value=1.2e-15 Score=118.98 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++|+++|+++|+.|+ |..|.|+ ++ +++++|||||+|.+.++|++||+ +++..|+++.|.|..
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999996 5566654 44 78999999999999999999998 688899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 116 a~ 117 (156)
T 1h2v_Z 116 DA 117 (156)
T ss_dssp ES
T ss_pred CC
Confidence 65
No 295
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=5.6e-16 Score=108.62 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=62.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccC----C-------CccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCcc
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDF----V-------LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTL 236 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~----g-------~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l 236 (259)
...++|||+|||+++|+++|+++|++| | .+. .+.+.. ++|||||+|.+.++|.+|+.+|+..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~-~~~~~~-----~kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL-AVQINQ-----DKNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE-EEEECS-----SSSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcce-EEEecC-----CCcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 467899999999999999999999999 7 554 566653 37999999999999999994499999
Q ss_pred CCeEEEEEe
Q 025001 237 GSRYIELFP 245 (259)
Q Consensus 237 ~gr~i~V~~ 245 (259)
+||.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999963
No 296
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=2.4e-16 Score=116.79 Aligned_cols=75 Identities=23% Similarity=0.246 Sum_probs=64.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeE-----E
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRY-----I 241 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~-----i 241 (259)
...++|||+|||+++|+++|+++|++||.+. .|.|+.+ |||||+|.+.++|++||+. |+..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVC-YADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEE-EEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 4568899999999999999999999999875 7888755 8999999999999999986 999999988 8
Q ss_pred EEEeCCHH
Q 025001 242 ELFPSSHE 249 (259)
Q Consensus 242 ~V~~~~~~ 249 (259)
.|....+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 88887764
No 297
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=109.22 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=66.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|| ++|+++|+++|++||.+. .|.|. +++|||||+|.+.++|.+||+. |+..|+|+.|.|..+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~-~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII-DLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEE-EEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEE-EEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 999999999999999875 67773 6789999999999999999977 999999999999988
Q ss_pred CHH
Q 025001 247 SHE 249 (259)
Q Consensus 247 ~~~ 249 (259)
.+.
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 298
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.4e-16 Score=113.52 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=66.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC--ceEEEEe--c-CCCCceeEEEEEeCCHHHHHHHHH-hc--cccCCCeEEE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD--IVDVLFV--H-KNNKFTGEAFCVLGYPLQVDFALQ-RN--RQNMGRRYVE 125 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~--iv~v~~~--~-~~g~~~G~afV~F~~~e~A~~Al~-~~--~~~~~~r~i~ 125 (259)
.+.++|||+|||+++|+++|+++|+.|| |.++.++ + .+|+++|||||+|.+.++|++|+. ++ +..++|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 3478999999999999999999999994 6667665 3 367999999999999999999998 43 3689999999
Q ss_pred EEecc
Q 025001 126 VFRSK 130 (259)
Q Consensus 126 v~~~~ 130 (259)
|..+.
T Consensus 86 V~~a~ 90 (109)
T 2dis_A 86 VDWAE 90 (109)
T ss_dssp EEESC
T ss_pred EEEcC
Confidence 97765
No 299
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=109.47 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=64.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
..+.++|||+|||+++|+++|+++|+.|| |..+.+.. ++|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 34578999999999999999999999996 55666652 37899999999999999996 68889999999997764
No 300
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=105.94 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=62.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-h-ccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-R-NRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~-~~~~~~~r~i~v~~~ 129 (259)
.+.++|||+|||+++|+++|+++|++|| +..+.+.. ++|||||+|.+.++|++|++ + ++..++|+.|.|..+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4478999999999999999999999996 55566663 47999999999999999998 5 777899999998654
No 301
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=113.87 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=61.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEe-cC-C---CCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFV-HK-N---NKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~-~~-~---g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~ 127 (259)
....++|||+|||+++|+++|+++|++||.+.+.++ +. + |+++|||||+|.+.++|++||+... .++|+.+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~ 83 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCV 83 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEec
Confidence 344789999999999999999999999976655544 33 3 7999999999999999999998652 3677777764
Q ss_pred e
Q 025001 128 R 128 (259)
Q Consensus 128 ~ 128 (259)
.
T Consensus 84 ~ 84 (114)
T 2dnl_A 84 S 84 (114)
T ss_dssp C
T ss_pred c
Confidence 3
No 302
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.7e-16 Score=111.73 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=68.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceE-EEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSI-HITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v-~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||+++|+++|+++|++||.+. .| .++.++ ..|.|||+|.+.++|.+|++. |+..|+||.|.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVE-SCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEE-EEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeE-EEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4568899999999999999999999999886 67 466654 234599999999999999986 99999999999999
Q ss_pred CCHHH
Q 025001 246 SSHEE 250 (259)
Q Consensus 246 ~~~~~ 250 (259)
+.+++
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87653
No 303
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.4e-16 Score=111.28 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=62.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCc-eE-EEEecCCCCceeEEEEEeCCHHHHHHHHH-hcc-ccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDI-VD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNR-QNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~i-v~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~-~~~~~r~i~v~~ 128 (259)
+.+.++|||+|||+++|+++|+++|++||. +. +.+ .++|||||+|.+.++|++|++ +++ ..++|+.|.|..
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 344789999999999999999999999965 55 344 257899999999999999997 788 789999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 80 a~ 81 (93)
T 2cqh_A 80 SV 81 (93)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 304
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=119.56 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=66.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCc-eEE-------EEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDI-VDV-------LFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRY 123 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~i-v~v-------~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~ 123 (259)
..+.++|||+|||+++|+++|+++|+.||. ..+ +....+|+++|||||+|.+.++|.+||. +++..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345789999999999999999999999974 332 2223589999999999999999999998 7888999999
Q ss_pred EEEEecc
Q 025001 124 VEVFRSK 130 (259)
Q Consensus 124 i~v~~~~ 130 (259)
|.|..+.
T Consensus 122 l~V~~a~ 128 (143)
T 3egn_A 122 MVVQFAR 128 (143)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 9997764
No 305
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=3.6e-16 Score=119.12 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=68.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..|.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999996 5567655 4 389999999999999999999997 688899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 124 a~ 125 (135)
T 2lea_A 124 AR 125 (135)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 306
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=5.7e-16 Score=121.40 Aligned_cols=80 Identities=15% Similarity=0.353 Sum_probs=72.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
+.++|||+|||+++|+++|+++|++||.+. .|.++.++ +|+++|||||+|.+.++|.+|++. +..++|+.|.|..+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVT-DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEE-EEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEccccccc
Confidence 467899999999999999999999999886 78988886 799999999999999999999984 679999999999886
Q ss_pred HHH
Q 025001 248 HEE 250 (259)
Q Consensus 248 ~~~ 250 (259)
+..
T Consensus 80 ~~~ 82 (167)
T 2cjk_A 80 PRD 82 (167)
T ss_dssp CHH
T ss_pred chh
Confidence 654
No 307
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.5e-15 Score=107.64 Aligned_cols=73 Identities=16% Similarity=0.076 Sum_probs=62.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCc-eEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCC--CeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMG--RRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~--~r~i~v~~~ 129 (259)
.+.++|||+|||+++|+++|+++|+.|+. .++.+... +|||||+|.+.++|++|++ +++..+. ++.|.|..+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 44689999999999999999999999964 45655532 7899999999999999998 7888898 999999766
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 91 ~ 91 (97)
T 1why_A 91 K 91 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 308
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.6e-16 Score=111.18 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=63.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
+...++|||+|||+++|+++|+++|+.|| |.++.+. +++|||||+|.+.++|++|+. +++..++|+.|.|..+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 44578999999999999999999999996 5567665 567999999999999999996 6888999999998654
No 309
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.9e-15 Score=106.23 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=63.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..+.+. ++||||+|.+.++|++|+. +++..++|+.|.|..+.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 44578999999999999999999999996 5566665 3499999999999999996 78889999999997764
No 310
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=1.4e-15 Score=118.62 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=68.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
....++|||+|||+++|+++|+++|+.|| |..+.+. + .+|+++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999996 4456654 4 489999999999999999999997 688899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 147 a~ 148 (158)
T 2kn4_A 147 AR 148 (158)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 311
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.61 E-value=1.6e-15 Score=118.28 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCC--eEEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGS--RYIELF 244 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~g--r~i~V~ 244 (259)
....+|||+|||+.+|+++|+++|++||.+. .|.|..+ +++|||||+|.+.++|++|++. ||..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~-~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVL-KIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEE-EEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEE-EEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 4556799999999999999999999999886 7777643 3679999999999999999987 9999955 999999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
.+.+.
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 98765
No 312
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=107.88 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=62.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEec-CCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVH-KNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~-~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~ 129 (259)
....++|||+|||+++|+++|+++|+.||.+ +| +.+ .+|+ ||||+|.+.++|++||.+++..++|+.|.|..+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCS
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEEC
Confidence 3446799999999999999999999999754 45 454 4555 999999999999999998888999999999654
No 313
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=2.2e-15 Score=106.35 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=58.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecch
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSKR 131 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~~ 131 (259)
.+.++|||+|||+++||++|+++|++|| |.++.++. .++|||||+|.+.++|+++. .....+.++.|.|..+..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~---~srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK---PFRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS---SCCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee---CCCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEEcCC
Confidence 3467999999999999999999999996 55676654 27899999999999999533 223346799999977753
No 314
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=106.97 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.+.++|||+|||+++|+++|+++|+.|| |..+.+. +|||||+|.+.++|++|++ +++..++|+.|.|..+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 44578999999999999999999999997 4456665 3599999999999999998 78889999999997764
No 315
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.5e-15 Score=120.91 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=70.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 52 QPPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 52 ~~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
.+...++|||+|||+++|+++|+++|+.|| |+.|.+. +.+|+++|||||+|.+.++|++||+ +++..++|+.|.|..
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 455688999999999999999999999996 5567664 5689999999999999999999998 788899999999977
Q ss_pred cch
Q 025001 129 SKR 131 (259)
Q Consensus 129 ~~~ 131 (259)
+..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 653
No 316
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1e-15 Score=107.24 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=60.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCC----C--------ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCC
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGL----D--------IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGR 121 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~----~--------iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~ 121 (259)
.+.++|||+|||+++|+++|+++|+.| | +.++.+. +++|||||+|.+.++|++|+.+++..++|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~----~~kg~afV~f~~~~~a~~A~~l~g~~~~g 79 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAMAFDGIIFQG 79 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC----SSSSEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec----CCCcEEEEEcCCHHHHHHHHhcCCCEECC
Confidence 347899999999999999999999988 6 3445544 23799999999999999999888889999
Q ss_pred eEEEEEe
Q 025001 122 RYVEVFR 128 (259)
Q Consensus 122 r~i~v~~ 128 (259)
+.|.|.+
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999853
No 317
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=1.5e-15 Score=123.98 Aligned_cols=80 Identities=25% Similarity=0.369 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
...++|||+|||+++|+++|+++|+.||.+. .|.++.+. +|+++|||||+|.+.++|.+||+. |+..|+|+.|.|..
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~-~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIK-SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEE-EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEE-EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 3467999999999999999999999999886 78998887 899999999999999999999986 99999999999987
Q ss_pred CCH
Q 025001 246 SSH 248 (259)
Q Consensus 246 ~~~ 248 (259)
+..
T Consensus 105 ~~~ 107 (216)
T 2qfj_A 105 PSN 107 (216)
T ss_dssp CSC
T ss_pred CCC
Confidence 643
No 318
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.5e-16 Score=112.98 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=64.6
Q ss_pred CCccEEEE--cCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCcc-----CCe
Q 025001 168 VHTGILRL--RGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL-----GSR 239 (259)
Q Consensus 168 ~~~~~i~V--~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l-----~gr 239 (259)
.+..+||| +|||+++|+++|+++|++||.+. .|.|+. .+|||||+|.+.++|++|++. ||+.| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~-~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEE-EEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeE-EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45778999 66999999999999999999875 676653 378999999999999999987 99988 799
Q ss_pred EEEEEeCC
Q 025001 240 YIELFPSS 247 (259)
Q Consensus 240 ~i~V~~~~ 247 (259)
+|.|..+.
T Consensus 97 ~l~v~~a~ 104 (114)
T 2cq2_A 97 TLYLNFVE 104 (114)
T ss_dssp ECEEEEES
T ss_pred EEEEEecc
Confidence 99998764
No 319
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=2.7e-16 Score=111.13 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=64.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchH
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQ 132 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~ 132 (259)
++|||+|||+++|+++|+++|+.|| +.++.+. + .+|+++|||||+|.+.+ |++|+. +++..++|+.|.|..+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999996 5567665 4 36999999999999999 999998 6888899999999887643
No 320
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.9e-16 Score=109.90 Aligned_cols=76 Identities=12% Similarity=0.160 Sum_probs=64.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeCC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPSS 247 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~~ 247 (259)
...++|||+|||+++|+++|+++|++||.+. .|.++.+ ++|||||+|.+.++|++|+. ....+.|+.|.|..+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~----~~g~afV~f~~~~~a~~~~~-~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVM-DVFIPKP----FRAFAFVTFADDQIAQSLCG-EDLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCC-EEECCSS----CCSCCEEECSCHHHHHHTTT-CEEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCee-EEEEecC----CCCEEEEEECCHHHHHHHhc-CCceeCCEEEEEEecC
Confidence 3568999999999999999999999999885 7888754 78999999999999986533 2345699999999886
Q ss_pred HH
Q 025001 248 HE 249 (259)
Q Consensus 248 ~~ 249 (259)
++
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 321
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.60 E-value=3.5e-15 Score=117.42 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
.+.++|||+|||+.+|+++|+++|+.|| |..|.+. + .+|+++|||||+|.+.++|++||. +++..|+|+.|.|..+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4478999999999999999999999996 4556654 4 589999999999999999999997 7888899999999776
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 150 ~ 150 (165)
T 1rk8_A 150 F 150 (165)
T ss_dssp E
T ss_pred c
Confidence 5
No 322
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=2.4e-15 Score=109.02 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=62.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
.+.++|||+|||+++|+++|+++|+.|+ |..+.+. +|||||+|.+.++|++||+ +++..+.++.|.|..+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 4478999999999999999999999996 4556654 4699999999999999998 68889999999997765
No 323
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=3.7e-15 Score=120.31 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=66.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
.++|||+|||+++|+++|+++|++|| |..|.+. +.+|+++|||||+|.+.++|++||...+..++|+.|.|....
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 68999999999999999999999996 4456654 668999999999999999999999987789999999996543
No 324
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-15 Score=105.31 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=60.0
Q ss_pred CccE-EEEcCCCCCCCHHH----HHHHhccCC-CccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEE
Q 025001 169 HTGI-LRLRGLPFSAGKDD----IMDFFKDFV-LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYI 241 (259)
Q Consensus 169 ~~~~-i~V~nLp~~~te~d----l~~~F~~~g-~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i 241 (259)
+..+ |||+|||+.+++++ |+++|++|| .+. .| +| |+|||.|.+.++|.+|++. ||..|.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl-~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVL-SI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEE-EC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeE-EE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3445 99999999999988 558999995 764 34 34 9999999999999999987 9999999999
Q ss_pred EEEeCCH
Q 025001 242 ELFPSSH 248 (259)
Q Consensus 242 ~V~~~~~ 248 (259)
+|..+..
T Consensus 77 ~v~~A~~ 83 (96)
T 2diu_A 77 IVSFTPK 83 (96)
T ss_dssp EEESSCC
T ss_pred EEEecCC
Confidence 9998864
No 325
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=104.17 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=62.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCC--CceE-EEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGL--DIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~--~iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++|+++|+++|+.| +.+. +.+ .+|||||+|.+.++|++||. +++..++|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999 6443 443 26799999999999999998 888899999999976
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 86 a~ 87 (99)
T 2cpd_A 86 AK 87 (99)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 326
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=109.32 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=64.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+...++|||+|||+++|+++|+++|+.|| |..|.+... +|||||+|.+.++|++||. +++..++|+.|.|..+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 34578999999999999999999999996 555666543 7899999999999999996 78889999999997664
No 327
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.1e-15 Score=107.91 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=62.0
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 53 PPPFPVVRLRGLPF-DCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 53 ~~~~~~vfV~nLp~-~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
..+.++|||+|||+ ++|+++|+++|+.|| |..+.+. +|||||+|.+.++|++|++ +++..+.|+.|.|..+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 34578999999999 999999999999996 5556663 6899999999999999998 6888999999999766
Q ss_pred c
Q 025001 130 K 130 (259)
Q Consensus 130 ~ 130 (259)
.
T Consensus 81 ~ 81 (96)
T 2kvi_A 81 S 81 (96)
T ss_dssp E
T ss_pred C
Confidence 4
No 328
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.59 E-value=3.5e-15 Score=121.63 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=67.5
Q ss_pred CccEEEEcCCC-CCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 169 HTGILRLRGLP-FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 169 ~~~~i~V~nLp-~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
+..+|||+||| +++|+++|+++|+.||.+. .|+++.+ ++|||||+|.+.++|.+||+. ||..|.||.|.|..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~-~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVE-KVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEE-EEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeE-EEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46789999999 8999999999999999886 7888754 478999999999999999986 999999999999987
Q ss_pred C
Q 025001 247 S 247 (259)
Q Consensus 247 ~ 247 (259)
.
T Consensus 78 ~ 78 (205)
T 3tyt_A 78 K 78 (205)
T ss_dssp S
T ss_pred c
Confidence 5
No 329
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=111.04 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=63.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.++|||+|||+++|+++|+++|++||.+ .|.+. .++|||||+|.+.++|++||. +++..++|+.|.|..+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46799999999999999999999999754 56554 267899999999999999997 78889999999997765
No 330
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=1.7e-15 Score=112.15 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=59.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeE-----EEE
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRY-----VEV 126 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~-----i~v 126 (259)
...++|||+|||+++|+++|+++|+.|+ |..+.++.. |||||+|.+.++|++||+ +++..|+|+. |.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3468999999999999999999999996 555666533 899999999999999998 7888899988 666
Q ss_pred Eecc
Q 025001 127 FRSK 130 (259)
Q Consensus 127 ~~~~ 130 (259)
....
T Consensus 89 ~~~~ 92 (115)
T 3beg_B 89 KVDG 92 (115)
T ss_dssp EECC
T ss_pred ccCC
Confidence 5544
No 331
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=8.6e-15 Score=107.33 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=62.8
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPFD-CTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~~-~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
...++|||+|||++ +|+++|+++|+.|| |..|.+ ++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 34689999999999 99999999999996 555666 57999999999999999995 78889999999997764
No 332
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=8e-15 Score=110.19 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=67.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceE-EEEEEcCHHHHHHHHHh-CCCccCC--eEEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE-AFVEFANAEDSKAAMAK-DRMTLGS--RYIEL 243 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~-afV~F~~~~~A~~Al~~-~~~~l~g--r~i~V 243 (259)
...-.|||+||++.+|+++|+++|++||.+. .|.+..+ ++|| |||+|.+.++|.+|++. ||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~-~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVL-KIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEE-EEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEE-EEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 4456788999999999999999999999886 7777653 3678 99999999999999987 9999988 99999
Q ss_pred EeCCHH
Q 025001 244 FPSSHE 249 (259)
Q Consensus 244 ~~~~~~ 249 (259)
..+++.
T Consensus 101 ~~ak~~ 106 (130)
T 3zzy_A 101 DFSKLT 106 (130)
T ss_dssp EECSCS
T ss_pred EecCCC
Confidence 998764
No 333
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=8e-16 Score=121.65 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=71.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEEEEeC
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIELFPS 246 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~V~~~ 246 (259)
....++|||+|||+++|+++|+++|+.||.+.. +.+....+|+++|||||+|.+.++|.+||++|+..|.|+.|.|..+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 356889999999999999999999999997653 4444445789999999999999999999977999999999999988
Q ss_pred CH
Q 025001 247 SH 248 (259)
Q Consensus 247 ~~ 248 (259)
..
T Consensus 89 ~~ 90 (175)
T 1fje_B 89 KG 90 (175)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 334
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=1.1e-14 Score=108.91 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=64.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceE-EEEEEcCHHHHHHHHHh-CCCccCC--eEEEEE
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGE-AFVEFANAEDSKAAMAK-DRMTLGS--RYIELF 244 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~-afV~F~~~~~A~~Al~~-~~~~l~g--r~i~V~ 244 (259)
..-.|||+|||+.+|+++|+++|++||.+. .|.|... .|| |||+|.+.++|..|++. ||..|.| +.|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~-~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQ-RIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEE-EEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEE-EEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 344578999999999999999999999886 7777642 286 99999999999999987 9999987 699999
Q ss_pred eCCHH
Q 025001 245 PSSHE 249 (259)
Q Consensus 245 ~~~~~ 249 (259)
.+.+.
T Consensus 98 ~Ak~~ 102 (124)
T 2e5i_A 98 YARPT 102 (124)
T ss_dssp CCSCS
T ss_pred EecCC
Confidence 88654
No 335
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.58 E-value=4e-15 Score=117.24 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=68.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCC---CCceEEEEEEcCHHHHHHHHHh-CCCccC---CeEE
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDG---RPTGEAFVEFANAEDSKAAMAK-DRMTLG---SRYI 241 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g---~~~G~afV~F~~~~~A~~Al~~-~~~~l~---gr~i 241 (259)
..++|||+|||+++|+++|+++|++||.+. .|.++.+..+ +++|||||+|.+.++|.+|++. |+..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVY-EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEE-EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEE-EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 357899999999999999999999999886 8999888854 8999999999999999999986 887765 6777
Q ss_pred EEEeCCH
Q 025001 242 ELFPSSH 248 (259)
Q Consensus 242 ~V~~~~~ 248 (259)
.+..+..
T Consensus 81 ~~~~~~~ 87 (175)
T 3nmr_A 81 QMKPADS 87 (175)
T ss_dssp EEEECGG
T ss_pred EEccccc
Confidence 7776643
No 336
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=7e-15 Score=109.82 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=67.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~ 246 (259)
...++|||+|| ++|+++|+++|++||.+. .|.+. +++|||||+|.+.++|.+||+. |+..|+|+.|.|..+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~-~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII-DLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCS-CEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEE-EEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999996 699999999999999886 67775 6789999999999999999977 999999999999998
Q ss_pred CHHH
Q 025001 247 SHEE 250 (259)
Q Consensus 247 ~~~~ 250 (259)
.+..
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7654
No 337
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-15 Score=105.51 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=59.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEecc
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~~~ 130 (259)
+.++|||+|||+++|+++|+++|+.|| |.++.+... ++|||||+|.+.++|++|+.. ...+.++.|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 478999999999999999999999996 556666532 789999999999999876543 445689999996654
No 338
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.57 E-value=5.7e-15 Score=114.34 Aligned_cols=75 Identities=17% Similarity=0.091 Sum_probs=65.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
....++|||+|||+++|+++|+++|+.|| |.++.+... ++|||||+|.+.++|++||. +++..++|+.|.|..+.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 45578999999999999999999999996 455666532 68999999999999999997 78889999999997664
No 339
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.2e-14 Score=102.70 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=61.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.+.++|||+|| ++|+++|+++|+.|| |..|.+. +++|||||+|.+.++|++||. +++..++|+.|.|..+.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 445789999996 999999999999996 4456653 678999999999999999996 68888999999997664
No 340
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=4.7e-14 Score=105.44 Aligned_cols=73 Identities=8% Similarity=0.061 Sum_probs=60.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeE-EEEEeCCHHHHHHHHH-hccccCCC--eEEEEEe
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGE-AFCVLGYPLQVDFALQ-RNRQNMGR--RYVEVFR 128 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~-afV~F~~~e~A~~Al~-~~~~~~~~--r~i~v~~ 128 (259)
..-..|||+|||+.+|+++|+++|++|| |.+|.+..+ .|| |||+|.+.++|++|++ +++..|.| +.|.|..
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3345678999999999999999999996 555766543 286 9999999999999997 78888866 6899966
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 99 Ak 100 (124)
T 2e5i_A 99 AR 100 (124)
T ss_dssp CS
T ss_pred ec
Confidence 54
No 341
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=8.3e-15 Score=106.61 Aligned_cols=84 Identities=24% Similarity=0.256 Sum_probs=72.5
Q ss_pred CCccEEEEcCC--CCCCC--------HHHHHHHhccCCCccceEEEeeCCC---CCCceEEEEEEcCHHHHHHHHHh-CC
Q 025001 168 VHTGILRLRGL--PFSAG--------KDDIMDFFKDFVLSEDSIHITMNSD---GRPTGEAFVEFANAEDSKAAMAK-DR 233 (259)
Q Consensus 168 ~~~~~i~V~nL--p~~~t--------e~dl~~~F~~~g~~~~~v~i~~~~~---g~~~G~afV~F~~~~~A~~Al~~-~~ 233 (259)
.++++|.|+|| |.... ++||++.|++||.+. .|.|+.+.. ++++|+|||+|.+.++|.+|++. ||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~-~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVK-SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEE-EEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEE-EEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 35789999998 44443 379999999999886 889988764 36899999999999999999987 99
Q ss_pred CccCCeEEEEEeCCHHHHH
Q 025001 234 MTLGSRYIELFPSSHEEMD 252 (259)
Q Consensus 234 ~~l~gr~i~V~~~~~~~~~ 252 (259)
+.++||.|.|..++...+.
T Consensus 82 ~~f~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDSYH 100 (105)
T ss_dssp CEETTEECEEEEECHHHHH
T ss_pred CEeCCCEEEEEEeCHHHHh
Confidence 9999999999999988765
No 342
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=8.6e-15 Score=102.81 Aligned_cols=67 Identities=7% Similarity=0.035 Sum_probs=57.4
Q ss_pred CCEEEEcCCCCCCCHHH----HHHHhcCCC--ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 56 FPVVRLRGLPFDCTEVD----VAEFFHGLD--IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~----L~~~F~~~~--iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
.++|||+|||+++++++ |+++|++|| |++| +| |+|||+|.+.++|++|++ +++..+.||.|.|..
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 33499999999999998 558999995 5566 34 999999999999999997 788899999999966
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 81 A~ 82 (96)
T 2diu_A 81 TP 82 (96)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 343
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=1.1e-14 Score=124.02 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=70.9
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIM----DFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~----~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
.+.++|||+|||+++|+++|+ ++|+.||.+. .|.+.. +|+++|||||+|.+.++|.+||+. |+..|.||.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~-~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQIL-DILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeE-EEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 567899999999999999977 8999999886 677664 789999999999999999999976 99999999999
Q ss_pred EEeCCHH
Q 025001 243 LFPSSHE 249 (259)
Q Consensus 243 V~~~~~~ 249 (259)
|..+...
T Consensus 84 v~~a~~~ 90 (282)
T 3pgw_A 84 IQYAKTD 90 (282)
T ss_pred EEEeccC
Confidence 9988554
No 344
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=2.6e-16 Score=116.61 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=67.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCce-E--------EEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCC
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIV-D--------VLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGR 121 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~--------v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~ 121 (259)
.+.++|||+|||+++|+++|+++|+.|+.+ . +.++ + .+|+++|||||+|.+.++|++||. +++..++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 347899999999999999999999999644 4 4443 4 478999999999999999999998 68889999
Q ss_pred eEEEEEecch
Q 025001 122 RYVEVFRSKR 131 (259)
Q Consensus 122 r~i~v~~~~~ 131 (259)
+.|.|..+..
T Consensus 85 ~~l~V~~a~~ 94 (116)
T 2lcw_A 85 NPIKVSFATR 94 (116)
Confidence 9999976653
No 345
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=105.76 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=57.6
Q ss_pred CCCEEEE--cCCCCCCCHHHHHHHhcCCCceE-EEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccC-----CCeEEE
Q 025001 55 PFPVVRL--RGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNM-----GRRYVE 125 (259)
Q Consensus 55 ~~~~vfV--~nLp~~~te~~L~~~F~~~~iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~-----~~r~i~ 125 (259)
+..+||| +|||+++|+++|+++|++||.+. |.+.. .+|||||+|.+.++|++|++ +++..+ .++.|.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3679999 77999999999999999997554 54432 37899999999999999997 677765 577777
Q ss_pred EEec
Q 025001 126 VFRS 129 (259)
Q Consensus 126 v~~~ 129 (259)
|..+
T Consensus 100 v~~a 103 (114)
T 2cq2_A 100 LNFV 103 (114)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7443
No 346
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=3e-14 Score=112.06 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCc-eEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEec
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDI-VDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRS 129 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~i-v~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~ 129 (259)
...++|||+|||+++|+++|+++|++||. ..+.+. + .+|+++|||||+|.+.++|.+|++ +++..++|+.|.|..+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999964 456554 5 389999999999999999999998 6888999999999765
No 347
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=2.2e-14 Score=111.77 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=63.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCC--eEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGR--RYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~--r~i~v~~ 128 (259)
+....+|||+|||+.+|+++|+++|++|| |.+|.+..+ +++|||||+|.+.++|++|++ +++..|.+ +.|.|..
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34467899999999999999999999996 455666533 357999999999999999998 68888844 9999977
Q ss_pred cch
Q 025001 129 SKR 131 (259)
Q Consensus 129 ~~~ 131 (259)
+..
T Consensus 121 Ak~ 123 (164)
T 1sjr_A 121 SKL 123 (164)
T ss_dssp CSS
T ss_pred ecC
Confidence 653
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6.6e-14 Score=103.01 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=66.0
Q ss_pred CCccEEEEcCCCCCCC-----------HHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCc
Q 025001 168 VHTGILRLRGLPFSAG-----------KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMT 235 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~t-----------e~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~ 235 (259)
.++++|+|+||....+ +++|+++|++||.+. .|.| .+. .++|||||+|.+.++|.+|++. ||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~-~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIR-KLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCS-EEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEe-EEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 5688999999944432 589999999999886 6755 443 4899999999999999999987 9999
Q ss_pred cCCeEEEEEeCCHH
Q 025001 236 LGSRYIELFPSSHE 249 (259)
Q Consensus 236 l~gr~i~V~~~~~~ 249 (259)
|+||.|.|..+.+.
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998653
No 349
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=4.2e-15 Score=108.00 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=63.2
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEE
Q 025001 175 LRGLPFSAGKDDIMDFF------------KDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYI 241 (259)
Q Consensus 175 V~nLp~~~te~dl~~~F------------~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i 241 (259)
+.|||+.+++++|+++| ++||.+. .|.|+.+.+++++|||||+|.+.++|.+|++. ||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~-~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE-EMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE-EEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceE-EEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777788888777666 9999886 89999888899999999999999999999987 9999999999
Q ss_pred EEEeCC
Q 025001 242 ELFPSS 247 (259)
Q Consensus 242 ~V~~~~ 247 (259)
.|..+.
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 998763
No 350
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=3.8e-14 Score=127.96 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-c-CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-H-KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~-~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
..+.++|||+|||+++|+++|.++|+.|| |+.|.|+ + .+|+++|||||+|.+.++|++||. +++..|+|+.|.|..
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999996 5556654 4 489999999999999999999996 688899999999987
Q ss_pred cch
Q 025001 129 SKR 131 (259)
Q Consensus 129 ~~~ 131 (259)
+..
T Consensus 179 a~~ 181 (437)
T 3pgw_S 179 ERG 181 (437)
T ss_pred eCC
Confidence 653
No 351
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=101.85 Aligned_cols=76 Identities=11% Similarity=-0.011 Sum_probs=62.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEE-EEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDV-LFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v-~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
...++|||+|||+++|+++|+++|+.|| |..+ .++.. +..|.|||+|.+.++|++||. +++..++|+.|.|..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~--~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD--SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS--SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3468999999999999999999999996 5556 34422 122449999999999999997 78899999999997765
Q ss_pred h
Q 025001 131 R 131 (259)
Q Consensus 131 ~ 131 (259)
.
T Consensus 91 ~ 91 (96)
T 2e44_A 91 D 91 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 352
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=2.1e-14 Score=118.86 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=69.2
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 168 VHTGILRLRGLPF-SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 168 ~~~~~i~V~nLp~-~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
.+.++|||+|||+ ++|+++|+++|+.||.+. .|.++.+. +|||||+|.+.++|.+|++. |+..|.|+.|.|..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~-~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEE-EEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeE-EEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5678999999999 999999999999999886 78888765 78999999999999999985 99999999999988
Q ss_pred CCH
Q 025001 246 SSH 248 (259)
Q Consensus 246 ~~~ 248 (259)
+..
T Consensus 107 a~~ 109 (229)
T 2adc_A 107 SKH 109 (229)
T ss_dssp CSC
T ss_pred ecC
Confidence 753
No 353
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=5.4e-14 Score=104.36 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=71.5
Q ss_pred CccEEEEcCCC--CC---CCHHHHHHHhccCCCccceEEEeeCC-----CCCCceEEEEEEcCHHHHHHHHHh-CCCccC
Q 025001 169 HTGILRLRGLP--FS---AGKDDIMDFFKDFVLSEDSIHITMNS-----DGRPTGEAFVEFANAEDSKAAMAK-DRMTLG 237 (259)
Q Consensus 169 ~~~~i~V~nLp--~~---~te~dl~~~F~~~g~~~~~v~i~~~~-----~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~ 237 (259)
++++|+|+||- .+ -.++||++.|++||.+. .|.|+.+. +++++|+|||+|.+.++|.+|++. ||..++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~-~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN-RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEE-EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEe-EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 57899999993 22 23689999999999886 78888765 357889999999999999999987 999999
Q ss_pred CeEEEEEeCCHHHHH
Q 025001 238 SRYIELFPSSHEEMD 252 (259)
Q Consensus 238 gr~i~V~~~~~~~~~ 252 (259)
||.|.|..++...+.
T Consensus 98 GR~i~v~~~~~~~f~ 112 (118)
T 3ue2_A 98 GRKVVAEVYDQERFD 112 (118)
T ss_dssp TEECEEEEECHHHHH
T ss_pred CcEEEEEEcChHhcc
Confidence 999999999887765
No 354
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.8e-14 Score=105.88 Aligned_cols=74 Identities=8% Similarity=-0.059 Sum_probs=61.4
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhcCCC-ceEEEE-ecC-CCCceeEEEEEeCC----HHH----HHHHHH---hcccc
Q 025001 57 PVVRLRGL----PFDCTEVDVAEFFHGLD-IVDVLF-VHK-NNKFTGEAFCVLGY----PLQ----VDFALQ---RNRQN 118 (259)
Q Consensus 57 ~~vfV~nL----p~~~te~~L~~~F~~~~-iv~v~~-~~~-~g~~~G~afV~F~~----~e~----A~~Al~---~~~~~ 118 (259)
+.|||+|| |++++|++|+++|+.|| |.++.+ .|+ +|+++|||||+|.+ +++ |.+|+. .++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 99999999999999996 556654 465 99999999999996 444 788876 37889
Q ss_pred CCCeEEEEEecc
Q 025001 119 MGRRYVEVFRSK 130 (259)
Q Consensus 119 ~~~r~i~v~~~~ 130 (259)
++||.|.|....
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999997654
No 355
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=1.6e-13 Score=110.34 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=68.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEe-cC-CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFV-HK-NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~-~~-~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
+.+.++|||+|||+++|+++|+++|+.|| +..+.+. ++ +|+++|||||+|.+.++|++|++ +++..++|+.|.|..
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999996 4456654 54 89999999999999999999998 688899999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
+.
T Consensus 191 a~ 192 (198)
T 2yh0_A 191 AS 192 (198)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 356
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=6.7e-14 Score=118.05 Aligned_cols=75 Identities=20% Similarity=0.278 Sum_probs=67.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEe
Q 025001 167 AVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFP 245 (259)
Q Consensus 167 ~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~ 245 (259)
....++|||+|||+++|+++|+++|+.||.+. .|.+. +++|||||+|.+.++|.+|+.. |+..|+|+.|.|..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPS-EVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCS-EEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEE-EEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 45678999999999999999999999999886 67775 4579999999999999999986 99999999999987
Q ss_pred CC
Q 025001 246 SS 247 (259)
Q Consensus 246 ~~ 247 (259)
+.
T Consensus 93 a~ 94 (261)
T 3sde_A 93 AT 94 (261)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=2.8e-14 Score=118.23 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=68.0
Q ss_pred CCccEEEEcCCCCCC---------CHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCcc-
Q 025001 168 VHTGILRLRGLPFSA---------GKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL- 236 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~---------te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l- 236 (259)
...++|||+|||..+ ++++|+++|++||.|+ .|+|+. ++|||||+|.+.++|+.|++. |+..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~-~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDID-RIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEE-EEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEE-EEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 467899999999998 7999999999999886 788874 589999999999999999987 99999
Q ss_pred -----------CCeEEEEEeCCHHHH
Q 025001 237 -----------GSRYIELFPSSHEEM 251 (259)
Q Consensus 237 -----------~gr~i~V~~~~~~~~ 251 (259)
.|+.|.|..+....-
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987653
No 358
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=3.1e-14 Score=114.85 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=67.4
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCC
Q 025001 170 TGILRLRGLPF-SAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSS 247 (259)
Q Consensus 170 ~~~i~V~nLp~-~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~ 247 (259)
.++|||+|||+ ++|+++|+++|+.||.+. .|.++.+. +|||||+|.+.++|.+|++. |+..++|+.|.|..+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~-~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQ-RVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCS-EEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEE-EEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 999999999999999875 78888764 78999999999999999985 9999999999999875
Q ss_pred H
Q 025001 248 H 248 (259)
Q Consensus 248 ~ 248 (259)
.
T Consensus 78 ~ 78 (198)
T 1qm9_A 78 H 78 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 359
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1.5e-13 Score=103.23 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=62.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeE-EEEEeCCHHHHHHHHH-hccccCCC--eEEEEE
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGE-AFCVLGYPLQVDFALQ-RNRQNMGR--RYVEVF 127 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~-afV~F~~~e~A~~Al~-~~~~~~~~--r~i~v~ 127 (259)
++.-..|||+||++.+|+++|+++|++|| |.+|.+..+ ++|+ |||+|.+.++|++|++ +++..+.+ +.|+|.
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 44567889999999999999999999996 555766543 3577 9999999999999997 78888866 889997
Q ss_pred ecc
Q 025001 128 RSK 130 (259)
Q Consensus 128 ~~~ 130 (259)
.+.
T Consensus 102 ~ak 104 (130)
T 3zzy_A 102 FSK 104 (130)
T ss_dssp ECS
T ss_pred ecC
Confidence 664
No 360
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.48 E-value=1.4e-13 Score=102.78 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=62.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecc
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSK 130 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~ 130 (259)
+.+.++|||+|| ++|+++|+++|+.|| |.+|.+. +++|||||+|.+.++|++||+ +++..++|+.|.|..+.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 455889999996 799999999999996 5567664 678999999999999999996 68889999999997765
No 361
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=2.8e-13 Score=98.45 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=66.7
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHHhcCCC-ceEEEEe-cC--CCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEE
Q 025001 55 PFPVVRLRGLPF-----DCTEVDVAEFFHGLD-IVDVLFV-HK--NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYV 124 (259)
Q Consensus 55 ~~~~vfV~nLp~-----~~te~~L~~~F~~~~-iv~v~~~-~~--~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i 124 (259)
++++|+|+||.. +.++++|++.|++|| |.++.+. ++ +++++|||||+|.+.++|.+|++ +++..++||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 477999999963 347999999999996 5567655 43 36899999999999999999997 78999999999
Q ss_pred EEEecchHHH
Q 025001 125 EVFRSKRQEY 134 (259)
Q Consensus 125 ~v~~~~~~~~ 134 (259)
.|..+....|
T Consensus 87 ~v~~a~~~~f 96 (105)
T 2pe8_A 87 KACFYNLDKF 96 (105)
T ss_dssp EEEECCHHHH
T ss_pred EEEEcCHHHh
Confidence 9998887665
No 362
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=7e-13 Score=97.68 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=70.6
Q ss_pred CCccEEEEcCCCCCCC----------HHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCcc
Q 025001 168 VHTGILRLRGLPFSAG----------KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL 236 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~t----------e~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l 236 (259)
.++++|.|+||=.... ++||++.|++||.+. .|.|..+. ++|+|||+|.+.++|.+|++. ||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~-~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVI-HIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCS-EEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEE-EEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4677999999832222 368899999999886 78776542 589999999999999999987 99999
Q ss_pred CCeEEEEEeCCHHHHHHHHH
Q 025001 237 GSRYIELFPSSHEEMDEALS 256 (259)
Q Consensus 237 ~gr~i~V~~~~~~~~~~~~~ 256 (259)
+||.|.|..+....+.+...
T Consensus 81 ~GR~i~v~~~~~~~y~~~fp 100 (114)
T 3s6e_A 81 AGKMITAAYVPLPTYHNLFP 100 (114)
T ss_dssp TTEECEEEEECHHHHHHHCG
T ss_pred CCEEEEEEEEcHHHHHHhCc
Confidence 99999999999998876543
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=7.9e-13 Score=97.17 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=62.5
Q ss_pred CCCCCEEEEcCCCCCCC-----------HHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccC
Q 025001 53 PPPFPVVRLRGLPFDCT-----------EVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNM 119 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~t-----------e~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~ 119 (259)
+.+.++|+|+||....+ +++|+++|++|| |.+|.|.++ .++|||||+|.+.++|++|+. +++..+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45588999999944332 689999999996 556766544 489999999999999999996 788889
Q ss_pred CCeEEEEEecc
Q 025001 120 GRRYVEVFRSK 130 (259)
Q Consensus 120 ~~r~i~v~~~~ 130 (259)
+||.|.|..+.
T Consensus 90 ~gr~l~v~~a~ 100 (112)
T 2dit_A 90 GGRQITAQAWD 100 (112)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEEeC
Confidence 99999997764
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=5.2e-13 Score=110.64 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=64.3
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccC--
Q 025001 53 PPPFPVVRLRGLPFDC---------TEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNM-- 119 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~---------te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~-- 119 (259)
....++|||+|||+++ +|++|+++|++|| |.+|.++ .++|||||+|.+.++|+.|++ +++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~----~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV----ESKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE----GGGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE----CCCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 4458899999999998 7999999999996 5557666 357999999999999999997 788888
Q ss_pred ----------CCeEEEEEecch
Q 025001 120 ----------GRRYVEVFRSKR 131 (259)
Q Consensus 120 ----------~~r~i~v~~~~~ 131 (259)
.|+.|.|..+..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-
T ss_pred cccccccccCCCCEEEEEEccC
Confidence 899999988764
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5e-12 Score=90.87 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=61.0
Q ss_pred ccEEEEcCCC-------CCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEE
Q 025001 170 TGILRLRGLP-------FSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242 (259)
Q Consensus 170 ~~~i~V~nLp-------~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~ 242 (259)
..+|.|.-.+ ..+|+++|+++|++||.+. .|.|+ ++++|||||+|.+.++|..||+. ...+.|++|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~-~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVL-NLVLS----SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEE-EEEEE----SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEE-EEEEc----cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEE
Confidence 4567776544 5689999999999999886 78877 57899999999999999999987 3446899999
Q ss_pred EEeCCHH
Q 025001 243 LFPSSHE 249 (259)
Q Consensus 243 V~~~~~~ 249 (259)
|..+...
T Consensus 84 V~~a~~~ 90 (100)
T 2d9o_A 84 ISWLEGQ 90 (100)
T ss_dssp EECSSCC
T ss_pred EEEccCC
Confidence 9887543
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=3.3e-12 Score=111.19 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=61.4
Q ss_pred CCCccEEEEcC--CCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCcc---CCe-
Q 025001 167 AVHTGILRLRG--LPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTL---GSR- 239 (259)
Q Consensus 167 ~~~~~~i~V~n--Lp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l---~gr- 239 (259)
..++.+|||+| |++.+|+++|+++|++||.+. .|.+.. +||||||+|.+.++|++|++. ||+.+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~-~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD-ALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE-EEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE-EEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 46778999999 689999999999999999886 666642 579999999999999999987 99877 356
Q ss_pred -EEEEEeC
Q 025001 240 -YIELFPS 246 (259)
Q Consensus 240 -~i~V~~~ 246 (259)
.|.|..+
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4555554
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=9.7e-13 Score=95.44 Aligned_cols=69 Identities=12% Similarity=0.196 Sum_probs=58.0
Q ss_pred EcCCCCCCCHHHHHHHh------------cCCC-ceEEEEe-cCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEE
Q 025001 61 LRGLPFDCTEVDVAEFF------------HGLD-IVDVLFV-HKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVE 125 (259)
Q Consensus 61 V~nLp~~~te~~L~~~F------------~~~~-iv~v~~~-~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~ 125 (259)
+.|||+.+++++|++.| ++|| |.+|.+. +.+|+++|||||+|.+.++|++|+. +++..++||.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 67889999998888777 9997 5557665 5578999999999999999999997 788999999998
Q ss_pred EEec
Q 025001 126 VFRS 129 (259)
Q Consensus 126 v~~~ 129 (259)
|..+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8654
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.28 E-value=8.8e-12 Score=90.49 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=65.5
Q ss_pred CCEEEEcCC--CCCCC--------HHHHHHHhcCCC-ceEEEEe-cCC---CCceeEEEEEeCCHHHHHHHHH-hccccC
Q 025001 56 FPVVRLRGL--PFDCT--------EVDVAEFFHGLD-IVDVLFV-HKN---NKFTGEAFCVLGYPLQVDFALQ-RNRQNM 119 (259)
Q Consensus 56 ~~~vfV~nL--p~~~t--------e~~L~~~F~~~~-iv~v~~~-~~~---g~~~G~afV~F~~~e~A~~Al~-~~~~~~ 119 (259)
+++|.|.|+ |.++. ++||++.|++|| |.+|.|. +.. ++++|+|||+|.+.++|++|+. +|+..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 679999998 55554 369999999997 4557665 333 4689999999999999999996 889999
Q ss_pred CCeEEEEEecchHHHH
Q 025001 120 GRRYVEVFRSKRQEYY 135 (259)
Q Consensus 120 ~~r~i~v~~~~~~~~~ 135 (259)
+||.|.|.......+.
T Consensus 85 ~GR~i~v~~~~~~~f~ 100 (105)
T 3v4m_A 85 ANRVVVTKYCDPDSYH 100 (105)
T ss_dssp TTEECEEEEECHHHHH
T ss_pred CCCEEEEEEeCHHHHh
Confidence 9999999888776653
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.3e-11 Score=85.94 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=57.6
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEE
Q 025001 56 FPVVRLRGLP-------FDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVF 127 (259)
Q Consensus 56 ~~~vfV~nLp-------~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~ 127 (259)
..+|.|.-.+ .++|+++|+++|++|| |.+|.++ ++++|||||+|.+.++|++||+. ...+.++.|.|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEE
Confidence 4578777765 4589999999999996 5567766 57899999999999999999986 334678899996
Q ss_pred ecc
Q 025001 128 RSK 130 (259)
Q Consensus 128 ~~~ 130 (259)
.+.
T Consensus 86 ~a~ 88 (100)
T 2d9o_A 86 WLE 88 (100)
T ss_dssp CSS
T ss_pred Ecc
Confidence 653
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.25 E-value=3.2e-11 Score=89.29 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=64.5
Q ss_pred CCEEEEcCCC--CCC---CHHHHHHHhcCCCc-eEEEEe-cC-----CCCceeEEEEEeCCHHHHHHHHH-hccccCCCe
Q 025001 56 FPVVRLRGLP--FDC---TEVDVAEFFHGLDI-VDVLFV-HK-----NNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRR 122 (259)
Q Consensus 56 ~~~vfV~nLp--~~~---te~~L~~~F~~~~i-v~v~~~-~~-----~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r 122 (259)
+++|+|+|+- .++ -++||++.|++||. .+|.|. +. +++++|+|||+|.+.++|.+|+. +++..++||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 6699999993 222 47899999999974 456654 32 45788999999999999999997 789999999
Q ss_pred EEEEEecchHHH
Q 025001 123 YVEVFRSKRQEY 134 (259)
Q Consensus 123 ~i~v~~~~~~~~ 134 (259)
.|.|.......|
T Consensus 100 ~i~v~~~~~~~f 111 (118)
T 3ue2_A 100 KVVAEVYDQERF 111 (118)
T ss_dssp ECEEEEECHHHH
T ss_pred EEEEEEcChHhc
Confidence 999988876665
No 371
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=8.6e-11 Score=86.82 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=71.9
Q ss_pred CCCCccEEEEcCCCCC-CCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcC-HHHHHHHHHh---CCCccCCeE
Q 025001 166 SAVHTGILRLRGLPFS-AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFAN-AEDSKAAMAK---DRMTLGSRY 240 (259)
Q Consensus 166 ~~~~~~~i~V~nLp~~-~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~-~~~A~~Al~~---~~~~l~gr~ 240 (259)
....+..|+|+||+++ +++++|+++|++||.|. +|.+..+.+ .|||.|.+ .++|..|+.. ++..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~-~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIK-WIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEE-EEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEE-EEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 4467889999999999 99999999999999886 888876654 59999999 8999999875 478999999
Q ss_pred EEEEeCCHHHHHHHH
Q 025001 241 IELFPSSHEEMDEAL 255 (259)
Q Consensus 241 i~V~~~~~~~~~~~~ 255 (259)
+++.+.+.++-+...
T Consensus 88 ~~~evL~GeeE~~yw 102 (121)
T 1owx_A 88 VTWEVLEGEVEKEAL 102 (121)
T ss_dssp EEEEECCHHHHHHHH
T ss_pred EEEEECCCHHHHHHH
Confidence 999999887765543
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=4e-11 Score=104.37 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=52.1
Q ss_pred CCCCCEEEEcC--CCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccC
Q 025001 53 PPPFPVVRLRG--LPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNM 119 (259)
Q Consensus 53 ~~~~~~vfV~n--Lp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~ 119 (259)
..+..+|||+| |++.+||++|+++|++||.|..+.+.. ++|||||+|.+.++|++|++ +|+..+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 34577999999 689999999999999997665333332 57999999999999999998 677644
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.13 E-value=7.1e-10 Score=81.48 Aligned_cols=81 Identities=9% Similarity=0.028 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCCCC----------CHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCe
Q 025001 55 PFPVVRLRGLPFDC----------TEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRR 122 (259)
Q Consensus 55 ~~~~vfV~nLp~~~----------te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r 122 (259)
++++|.++|+=... -++||++.|++|| |.+|.+...+ ++|+|||+|.+.++|++|++ ++|..++||
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 47799999983222 2358899999996 5556664332 58999999999999999997 789999999
Q ss_pred EEEEEecchHHHHHH
Q 025001 123 YVEVFRSKRQEYYKA 137 (259)
Q Consensus 123 ~i~v~~~~~~~~~~~ 137 (259)
.|.|..+....|...
T Consensus 84 ~i~v~~~~~~~y~~~ 98 (114)
T 3s6e_A 84 MITAAYVPLPTYHNL 98 (114)
T ss_dssp ECEEEEECHHHHHHH
T ss_pred EEEEEEEcHHHHHHh
Confidence 999999887777543
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=1.9e-10 Score=79.95 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=60.1
Q ss_pred CccEEEEcCCC----CCCCH----HHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeE
Q 025001 169 HTGILRLRGLP----FSAGK----DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRY 240 (259)
Q Consensus 169 ~~~~i~V~nLp----~~~te----~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~ 240 (259)
+..+|+|.-+| .+.-. .+|.+.|++||.+. .|+++.+. +||+|.+.++|.+||++||..++||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi-~vr~~~d~-------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVI-LIRFVEDK-------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEE-EEEECSSS-------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeE-EEEEecCC-------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 45678887776 23333 67889999999764 78888653 99999999999999999999999999
Q ss_pred EEEEeCCH
Q 025001 241 IELFPSSH 248 (259)
Q Consensus 241 i~V~~~~~ 248 (259)
|+|.++++
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999875
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.95 E-value=1.8e-09 Score=88.53 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=62.1
Q ss_pred CCCHHHHHHHhccCCCccceEEEeeCC-----CCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHH
Q 025001 181 SAGKDDIMDFFKDFVLSEDSIHITMNS-----DGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMD 252 (259)
Q Consensus 181 ~~te~dl~~~F~~~g~~~~~v~i~~~~-----~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~ 252 (259)
.-.+++|++.|++||.+. .|.|+.+. +++++|++||+|.+.++|.+|++. ||..++||.|.|..+...++.
T Consensus 140 ~e~~~dl~~e~~~~G~v~-~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~ 216 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVN-RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFD 216 (222)
T ss_dssp TTHHHHHHHHHTTTSCEE-EEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHH
T ss_pred HHHHHHHHHHHHccCCeE-EEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhh
Confidence 345689999999999886 78887443 458999999999999999999987 999999999999999988765
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=8.2e-10 Score=77.15 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCccEEEEcCCCCC-----CCH----HHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCC
Q 025001 168 VHTGILRLRGLPFS-----AGK----DDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238 (259)
Q Consensus 168 ~~~~~i~V~nLp~~-----~te----~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~g 238 (259)
.+..+|+|.-++.+ +-. .+|.+.|++||.+. .|+++.++ +||+|.+.++|.+||++||..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi-lvr~v~d~-------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIV-LVRINQGQ-------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCS-EEEEETTE-------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEE-EEEEecCc-------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 35668999988743 222 56889999999664 78998764 999999999999999999999999
Q ss_pred eEEEEEeCC
Q 025001 239 RYIELFPSS 247 (259)
Q Consensus 239 r~i~V~~~~ 247 (259)
|.|+|.+-+
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998765
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1.2e-08 Score=70.96 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=56.5
Q ss_pred CCEEEEcCCC----CCCCH----HHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEE
Q 025001 56 FPVVRLRGLP----FDCTE----VDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEV 126 (259)
Q Consensus 56 ~~~vfV~nLp----~~~te----~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v 126 (259)
+.||+|.-.| .+.-. .+|.+.|++|| ++.+++... .+||+|.+.++|.+||++++..++||.|.|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d------~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED------KMWVTFLEGSSALNVLSLNGKELLNRTITI 80 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS------SEEEEESSHHHHHHGGGGTTCEETTEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC------CEEEEECChHHHHHHHhcCCeEeCCeEEEE
Confidence 5699998887 23334 67999999997 666776532 389999999999999999999999999999
Q ss_pred Eecc
Q 025001 127 FRSK 130 (259)
Q Consensus 127 ~~~~ 130 (259)
...+
T Consensus 81 ~lkt 84 (91)
T 2dnr_A 81 ALKS 84 (91)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7665
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=3.9e-08 Score=72.55 Aligned_cols=73 Identities=11% Similarity=-0.010 Sum_probs=58.0
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHhcCCCce-EEEEecCCCCceeEEEEEeCC-HHHHHHHHHh---ccccCCCeEEEEE
Q 025001 54 PPFPVVRLRGLPFD-CTEVDVAEFFHGLDIV-DVLFVHKNNKFTGEAFCVLGY-PLQVDFALQR---NRQNMGRRYVEVF 127 (259)
Q Consensus 54 ~~~~~vfV~nLp~~-~te~~L~~~F~~~~iv-~v~~~~~~g~~~G~afV~F~~-~e~A~~Al~~---~~~~~~~r~i~v~ 127 (259)
..++.|||+||+++ +++++|+++|++|+.| .|.+.. |.. .|||+|.+ .++|..|+.. .+..|.+..+.+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~--g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR--GAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT--TCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec--CCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 34899999999999 9999999999999644 455542 222 59999999 8999999974 2557888888886
Q ss_pred ecc
Q 025001 128 RSK 130 (259)
Q Consensus 128 ~~~ 130 (259)
..+
T Consensus 92 vL~ 94 (121)
T 1owx_A 92 VLE 94 (121)
T ss_dssp ECC
T ss_pred ECC
Confidence 665
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.4e-07 Score=67.28 Aligned_cols=79 Identities=13% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccC-----CCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHH-HhCCCccCCeEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDF-----VLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM-AKDRMTLGSRYI 241 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~-----g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al-~~~~~~l~gr~i 241 (259)
+..++|-+-|||.++++..|+.|.+++ |.+. .|.+..|..| |+|+|.+...|.+|. .+||.+|.||.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~-KI~L~pDH~G-----Aivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIR-KILLVSDFNG-----AIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCS-EEEEETTTTE-----EEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCcccee-EEEEecCCCc-----eEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 457789999999999999999999999 8554 5777766655 999999999998877 569999999999
Q ss_pred EEEeCCHHHHHHH
Q 025001 242 ELFPSSHEEMDEA 254 (259)
Q Consensus 242 ~V~~~~~~~~~~~ 254 (259)
++ .+..|+...
T Consensus 93 r~--gTv~eL~~~ 103 (117)
T 2l9w_A 93 RS--GTINDMKRY 103 (117)
T ss_dssp EE--ECHHHHHHH
T ss_pred Ee--cCHHHHHhc
Confidence 98 566666654
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=3.2e-08 Score=69.09 Aligned_cols=68 Identities=10% Similarity=-0.017 Sum_probs=55.8
Q ss_pred CCEEEEcCCCCC-----CCH----HHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEE
Q 025001 56 FPVVRLRGLPFD-----CTE----VDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVE 125 (259)
Q Consensus 56 ~~~vfV~nLp~~-----~te----~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~ 125 (259)
+.||+|.-++.+ +-. .+|.+.|++|| ++.+++.... +||+|.+.++|.+||++++..++||.|.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAVK 88 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEEE
Confidence 669999998743 222 56899999997 7777766322 9999999999999999999999999999
Q ss_pred EEec
Q 025001 126 VFRS 129 (259)
Q Consensus 126 v~~~ 129 (259)
|...
T Consensus 89 V~~k 92 (95)
T 1ufw_A 89 ISGP 92 (95)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9653
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=8.8e-07 Score=62.58 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcC----C-CceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCCeEEEEEe
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHG----L-DIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGRRYVEVFR 128 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~----~-~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~r~i~v~~ 128 (259)
.-..+|.|.|||.++.++.|.-+|+. - |.+..+-... +-|+|+|.+.+.|++.|++..+.|.+-.|.|.+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 34679999999999999999999985 2 4554332222 479999999999999999888899999999966
Q ss_pred cchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCC
Q 025001 129 SKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAG 183 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~t 183 (259)
.. .....+|+++|||+.++
T Consensus 81 ~~------------------------------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 81 AP------------------------------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp CC------------------------------------CCCCCCCCCCSCCCCCC
T ss_pred CC------------------------------------CCCcceEeeecCCCCCC
Confidence 43 13466799999998765
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.50 E-value=4.2e-07 Score=74.28 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=56.3
Q ss_pred CCCHHHHHHHhcCCCc-eEEEEe-c-----CCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEecchHHH
Q 025001 67 DCTEVDVAEFFHGLDI-VDVLFV-H-----KNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFRSKRQEY 134 (259)
Q Consensus 67 ~~te~~L~~~F~~~~i-v~v~~~-~-----~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~~~~~~~ 134 (259)
+-.+++|++.|++||. ..+.+. + .+++++|++||+|.+.++|++|++ +++..++||.|.+......+|
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f 215 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERF 215 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHh
Confidence 3467899999999964 455553 2 245899999999999999999997 788999999999988876665
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=6.3e-05 Score=53.10 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=60.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcc---CC--CccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCCeEEE
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKD---FV--LSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGSRYIE 242 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~---~g--~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~gr~i~ 242 (259)
....+|.|.|||..+.++.|.-+|++ -| .++ .|.... +-|+|+|.+.+.|++.|+...+.|.+..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~-~v~~~~-------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVL-SWQRLG-------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEE-EEEEET-------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceee-EEEEcC-------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 45679999999999999999999987 23 543 444432 369999999999999999878999999999
Q ss_pred EEeCCH
Q 025001 243 LFPSSH 248 (259)
Q Consensus 243 V~~~~~ 248 (259)
|.+..+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 988644
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.94 E-value=4.4e-05 Score=53.25 Aligned_cols=55 Identities=20% Similarity=0.382 Sum_probs=48.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHHh
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~ 114 (259)
.....++| ++|.++...||.++|+.||-+.|..+|.+ .|||.|.+++.|..||..
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDT-----sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDT-----SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETT-----EEEEECSCHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCC-----eEEEEecCHHHHHHHHHh
Confidence 33557777 99999999999999999987888877765 799999999999999974
No 385
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.81 E-value=2.3e-05 Score=57.84 Aligned_cols=87 Identities=8% Similarity=0.226 Sum_probs=63.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCC---------C-----CCceEEEEEEcCHHHHHHHHHhCCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD---------G-----RPTGEAFVEFANAEDSKAAMAKDRM 234 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~---------g-----~~~G~afV~F~~~~~A~~Al~~~~~ 234 (259)
...-|.|-|.|.+.+. .|.+.|++||.+...+....... . .....-.|.|+++.+|.+||+.||+
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 3456889999877765 46688999996543332221000 0 0234789999999999999999999
Q ss_pred ccCCeEEEEEeCCHHHHHHHHH
Q 025001 235 TLGSRYIELFPSSHEEMDEALS 256 (259)
Q Consensus 235 ~l~gr~i~V~~~~~~~~~~~~~ 256 (259)
.|+|..|-|.+.++..+.+..+
T Consensus 85 ii~G~mIGV~Py~~~~ve~l~~ 106 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKDAVERLQK 106 (132)
T ss_dssp EETTEECEEEECCHHHHHHHC-
T ss_pred EeCcEEEEEEECCHHHHHHHhc
Confidence 9999999999999888776544
No 386
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00014 Score=51.84 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=59.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhcCC-----C-ceEEEEecCCCCceeEEEEEeCCHHHHHHHH-HhccccCCCeEEEEE
Q 025001 55 PFPVVRLRGLPFDCTEVDVAEFFHGL-----D-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFAL-QRNRQNMGRRYVEVF 127 (259)
Q Consensus 55 ~~~~vfV~nLp~~~te~~L~~~F~~~-----~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al-~~~~~~~~~r~i~v~ 127 (259)
..++|=+=|||-++++..|+.|.+++ + ++.+.++..- |=|+|+|++...|-+|. ..+|..+.||.|.+.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 36789999999999999999999987 5 5667766332 35999999999998886 689999999999985
Q ss_pred ec
Q 025001 128 RS 129 (259)
Q Consensus 128 ~~ 129 (259)
..
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.74 E-value=0.00015 Score=50.62 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=46.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~ 231 (259)
....++| ++|.++...||.++|++||-+ .|..+.|. -|||.|.+++.|..|+..
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv--~I~WidDT------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI--QISWIDDT------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC--CCEEEETT------EEEEECSCHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE--EEEEEcCC------eEEEEecCHHHHHHHHHh
Confidence 4556677 999999999999999999965 48888764 499999999999999974
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=0.00018 Score=52.29 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=61.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCC-eEEEEEeC
Q 025001 168 VHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS-RYIELFPS 246 (259)
Q Consensus 168 ~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~g-r~i~V~~~ 246 (259)
.....|.|-+.|... ...|...|++||.+. .... .++ .-+-.|.|.++.+|++||.+||..|+| -.|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv-~~~~---~~~--~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNIL-KHVM---SNT--GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEE-EEEE---CSS--SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEE-Eecc---CCC--CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 457789999999886 566889999999775 3333 222 238999999999999999999999985 77889997
Q ss_pred CHHHHHH
Q 025001 247 SHEEMDE 253 (259)
Q Consensus 247 ~~~~~~~ 253 (259)
..+...+
T Consensus 95 ~d~~vi~ 101 (119)
T 1wwh_A 95 IDKNVME 101 (119)
T ss_dssp CCHHHHC
T ss_pred CCHHHHH
Confidence 6554443
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.48 E-value=9.1e-05 Score=51.83 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=45.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025001 170 TGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231 (259)
Q Consensus 170 ~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~ 231 (259)
...++| ++|.++...||.++|++||-+ .|..+.|. -|||.|.+++.|..|+..
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv--~I~WidDT------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI--QISWIDDT------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE--EEEEEETT------EEEEEEEEECHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE--EEEEEcCC------eEEEEecCHHHHHHHHHh
Confidence 456677 999999999999999999855 47888663 499999999999999985
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.47 E-value=0.00013 Score=51.07 Aligned_cols=51 Identities=22% Similarity=0.456 Sum_probs=45.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHHh
Q 025001 58 VVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114 (259)
Q Consensus 58 ~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~ 114 (259)
.++| ++|.++...||.++|+.||-+.|..++.+ .|||.|.+++.|..||..
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDT-----sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDT-----SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETT-----EEEEEEEEECHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCC-----eEEEEecCHHHHHHHHHh
Confidence 5666 99999999999999999997788877765 799999999999999984
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.31 E-value=0.0011 Score=48.10 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=60.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHHhccccCCC-eEEEEEecch
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQRNRQNMGR-RYVEVFRSKR 131 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~~~~~~-r~i~v~~~~~ 131 (259)
...+.|-|-|.|... -..|...|+.|| |++... ..+. .+-.|.|.++.+|++||.+|+..+++ -.|-|.++..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~--NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTG--NWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSS--SEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECCC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCC--CeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECCC
Confidence 347799999999996 667888899995 666554 2222 49999999999999999999999875 6677888766
Q ss_pred HHHHH
Q 025001 132 QEYYK 136 (259)
Q Consensus 132 ~~~~~ 136 (259)
+....
T Consensus 97 ~~vi~ 101 (119)
T 1wwh_A 97 KNVME 101 (119)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 55543
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.21 E-value=0.0017 Score=45.01 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=50.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC-C-C-CCceEEEEEEcCHHHHHHHHHh-CCCcc
Q 025001 171 GILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS-D-G-RPTGEAFVEFANAEDSKAAMAK-DRMTL 236 (259)
Q Consensus 171 ~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~-~-g-~~~G~afV~F~~~~~A~~Al~~-~~~~l 236 (259)
.+|.|++||++.|++++.+.++...... ....+..+ + + ..-.-|||.|.+.+++..-.+. +|+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d-~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD-YFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEE-EEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccce-EEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4799999999999999999999986543 45554433 1 1 2345799999999999888887 88866
No 393
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.79 E-value=0.0031 Score=44.61 Aligned_cols=73 Identities=8% Similarity=0.100 Sum_probs=56.3
Q ss_pred CccEEEEcCCCCCC-C----HHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEE
Q 025001 169 HTGILRLRGLPFSA-G----KDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIE 242 (259)
Q Consensus 169 ~~~~i~V~nLp~~~-t----e~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~ 242 (259)
-.++|+|.||+.++ + .+.++++|..|+... .....+. -.-..|.|.++++|.+|-.. |+..+.|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~-tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDT-TFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC-EEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCc-ceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35689999998754 2 257889999998664 3333322 11479999999999999877 99999999999
Q ss_pred EEeCC
Q 025001 243 LFPSS 247 (259)
Q Consensus 243 V~~~~ 247 (259)
|..+.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98765
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.48 E-value=0.012 Score=40.65 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=45.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEe--cC--CCCceeEEEEEeCCHHHHHHHHH-hccc
Q 025001 57 PVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFV--HK--NNKFTGEAFCVLGYPLQVDFALQ-RNRQ 117 (259)
Q Consensus 57 ~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~--~~--~g~~~G~afV~F~~~e~A~~Al~-~~~~ 117 (259)
++|-|++||+++||+++.+.++.+..++ ...+ +. .-....-|||.|.+.+++..-.+ .++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 5799999999999999999999884333 2232 11 11334679999999999888876 4555
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.32 E-value=0.0069 Score=44.63 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=56.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCC-ceEEE-Eec---------C-----CC-CceeEEEEEeCCHHHHHHHHHhcccc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLD-IVDVL-FVH---------K-----NN-KFTGEAFCVLGYPLQVDFALQRNRQN 118 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~-iv~v~-~~~---------~-----~g-~~~G~afV~F~~~e~A~~Al~~~~~~ 118 (259)
...|.|-|.|.+.+. .+.+.|+.|| |++-. ..+ + .+ .....-.|+|.++.+|.+||.+|+..
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 457888899877665 5667788885 55521 111 0 00 12357899999999999999999999
Q ss_pred CCCeEEEEEecchHHHH
Q 025001 119 MGRRYVEVFRSKRQEYY 135 (259)
Q Consensus 119 ~~~r~i~v~~~~~~~~~ 135 (259)
++|..|-|.++++..+.
T Consensus 86 i~G~mIGV~Py~~~~ve 102 (132)
T 3p3d_A 86 FNGVLLGVIPYTKDAVE 102 (132)
T ss_dssp ETTEECEEEECCHHHHH
T ss_pred eCcEEEEEEECCHHHHH
Confidence 99999999998765543
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.57 E-value=0.011 Score=41.29 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=45.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCC--CC-CCceEEEEEEcCHHHHHHHHHh-CCCcc
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNS--DG-RPTGEAFVEFANAEDSKAAMAK-DRMTL 236 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~--~g-~~~G~afV~F~~~~~A~~Al~~-~~~~l 236 (259)
.+-+|.|+.||++.||+++.+.++++-... ....+..+ .+ ..-.-|||.|.+.++...-.+. +|..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d-~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHD-YFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEE-ECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccc-eEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 455799999999999999888887642211 11111111 11 1123599999999999988887 88766
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.39 E-value=0.0074 Score=54.24 Aligned_cols=57 Identities=9% Similarity=0.047 Sum_probs=41.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceE-EEEecCCCCceeEEEEEeCCHHHHHHHHHhcc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVD-VLFVHKNNKFTGEAFCVLGYPLQVDFALQRNR 116 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~-v~~~~~~g~~~G~afV~F~~~e~A~~Al~~~~ 116 (259)
.++|+|. .|...++.+|.++|+.||.|. +.+....| -||.|+|.+.+++..++....
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccC
Confidence 7899998 799999999999999998776 44444344 599999999999998886543
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.03 E-value=0.013 Score=52.60 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=43.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHhCCCccCC
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAKDRMTLGS 238 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~~~~~l~g 238 (259)
..+.|+|. .|..+++.+|.++|+.||.|. ++.+-.+ .| -||.|+|.+.+++..++.....-..+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~-~~~~~~~-~g---~~~~vef~~~~~~~~~~~~~~~p~~~ 115 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPIN-NHFFYES-FG---LYAVVEFCQKESIGSLQNGTHTPXXX 115 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCC-CEEEECS-SS---EEEEEECC---CCHHHHSSCCCCCCB
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcc-eEEEEcc-CC---eEEEEEeCCHHHHHHHHhccCCCccc
Confidence 35689998 799999999999999999986 5555432 23 49999999999999887654443333
No 399
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.87 E-value=0.052 Score=38.28 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=52.8
Q ss_pred CCEEEEcCCCCCC-CH----HHHHHHhcCCC-ceEEEEecCCCCceeEEEEEeCCHHHHHHHHH-hccccCCCeEEEEEe
Q 025001 56 FPVVRLRGLPFDC-TE----VDVAEFFHGLD-IVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQ-RNRQNMGRRYVEVFR 128 (259)
Q Consensus 56 ~~~vfV~nLp~~~-te----~~L~~~F~~~~-iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~-~~~~~~~~r~i~v~~ 128 (259)
.++|+|.||+.++ +. +.++++|..++ .+......-- .-..|.|.++++|.+|-. .++..+.|+.++|+-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 3489999998766 32 46688999884 4554433211 146899999999999976 678889999999977
Q ss_pred cc
Q 025001 129 SK 130 (259)
Q Consensus 129 ~~ 130 (259)
..
T Consensus 81 gq 82 (104)
T 1wey_A 81 AQ 82 (104)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.27 E-value=0.12 Score=47.06 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=47.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCHHHHHHHHHh
Q 025001 54 PPFPVVRLRGLPFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114 (259)
Q Consensus 54 ~~~~~vfV~nLp~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~ 114 (259)
.....++|+ +|..+...+|.+.|+.|+-++|..++.+ .|||.|.+.+.|..++..
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt-----~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDT-----SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSS-----EEEEECSCHHHHHHHHHH
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCC-----eEEEEECCHHHHHHHHHH
Confidence 335577787 9999999999999999998888877765 699999999999999974
No 401
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.05 E-value=0.066 Score=37.30 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=43.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhcCCCceEE-EEe--c-CCC-CceeEEEEEeCCHHHHHHHHHh-ccc
Q 025001 56 FPVVRLRGLPFDCTEVDVAEFFHGLDIVDV-LFV--H-KNN-KFTGEAFCVLGYPLQVDFALQR-NRQ 117 (259)
Q Consensus 56 ~~~vfV~nLp~~~te~~L~~~F~~~~iv~v-~~~--~-~~g-~~~G~afV~F~~~e~A~~Al~~-~~~ 117 (259)
+-.|-|+.||+++||+++.+.++.+-..+- ..+ + ..+ ..-.-|||.|.+.++...-.+. ++.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~ 76 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY 76 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc
Confidence 448999999999999999999887622221 111 1 111 2235699999999999888874 444
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.57 E-value=0.6 Score=42.49 Aligned_cols=54 Identities=20% Similarity=0.328 Sum_probs=44.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~ 231 (259)
....++|+ +|..+...+|.++|+.||.+ .|..+.+ + .|||.|.+.+.|..+++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v--~V~widd-t-----~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI--QISWIDD-T-----SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC--EEEECSS-S-----EEEEECSCHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE--EEEEEcC-C-----eEEEEECCHHHHHHHHHH
Confidence 34567776 99999999999999999965 4776644 2 599999999999999876
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=81.72 E-value=3.2 Score=31.85 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=54.1
Q ss_pred CccEEEEcCCCCC---------CCHHHHHHHh--ccCCCccceEEEeeCCCCCCceEEEEEEcCHH-HHHHHHH------
Q 025001 169 HTGILRLRGLPFS---------AGKDDIMDFF--KDFVLSEDSIHITMNSDGRPTGEAFVEFANAE-DSKAAMA------ 230 (259)
Q Consensus 169 ~~~~i~V~nLp~~---------~te~dl~~~F--~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~-~A~~Al~------ 230 (259)
-+.++.|-|+|.. ....+|++.| +.|..+. |+.+.++.| ++|+|.|.|.+-- --..|+.
T Consensus 11 WPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k--v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~fek~Fe 87 (172)
T 4e8u_A 11 YPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR--VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLFDKAYT 87 (172)
T ss_dssp ESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE--EEEEECSSB-EEEEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce--eEecccCCC-CceeEEEEecCChHHHHHHHHHHHHHH
Confidence 4567889999862 2337899977 8898864 777777776 7899999999632 2233332
Q ss_pred h--CC------CccCCeEEEEEeCCHHHHH
Q 025001 231 K--DR------MTLGSRYIELFPSSHEEMD 252 (259)
Q Consensus 231 ~--~~------~~l~gr~i~V~~~~~~~~~ 252 (259)
. +| ..-.++.|-=+.|..+++.
T Consensus 88 ~~~~GK~dW~~~~~~~~~lyGW~Ar~dDy~ 117 (172)
T 4e8u_A 88 VDGHGKKDWLKKDGPKLGLYGWIARADDYN 117 (172)
T ss_dssp HTTCSHHHHTCSSSCCCSCEEEECBHHHHH
T ss_pred HcCCCHHHHhhCCCCCCceEEEeccccccc
Confidence 2 11 1234566777777777764
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=80.33 E-value=4 Score=31.33 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=41.3
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--cCCCceEEE-EecCCCCceeEEEEEeCCHHH-HHHHHHh
Q 025001 58 VVRLRGLPF-D--------CTEVDVAEFF--HGLDIVDVL-FVHKNNKFTGEAFCVLGYPLQ-VDFALQR 114 (259)
Q Consensus 58 ~vfV~nLp~-~--------~te~~L~~~F--~~~~iv~v~-~~~~~g~~~G~afV~F~~~e~-A~~Al~~ 114 (259)
++.|-|+|. . ....+|++.| +.|.++.+. +..+.| ++|+|.|.|.+.-. -..|+..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLG-HSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSB-EEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCC-CceeEEEEecCChHHHHHHHHH
Confidence 788889887 2 3347899977 999988876 456666 56999999997544 4556654
No 405
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=52.97 E-value=22 Score=24.65 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHhcc-CCCccceEEEe--eCC--CCCCceEEEEEEcCHHHHHHH
Q 025001 180 FSAGKDDIMDFFKD-FVLSEDSIHIT--MNS--DGRPTGEAFVEFANAEDSKAA 228 (259)
Q Consensus 180 ~~~te~dl~~~F~~-~g~~~~~v~i~--~~~--~g~~~G~afV~F~~~~~A~~A 228 (259)
.+.+..+|++-... |+...+.|.+. ... .|+++|||.| |+|.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 67888999977755 55444334433 222 4678888855 7777777654
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=50.16 E-value=56 Score=22.02 Aligned_cols=56 Identities=13% Similarity=0.166 Sum_probs=42.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhcCCCce-EEEEecCCCCceeEEEEEeCCHHHHHHHHHh
Q 025001 53 PPPFPVVRLRGLPFDCTEVDVAEFFHGLDIV-DVLFVHKNNKFTGEAFCVLGYPLQVDFALQR 114 (259)
Q Consensus 53 ~~~~~~vfV~nLp~~~te~~L~~~F~~~~iv-~v~~~~~~g~~~G~afV~F~~~e~A~~Al~~ 114 (259)
...+|-|.|=|+|..+-..++.-.-..+|-. .|...+ |.|.|.|.+.++-.-|+++
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid------gqamirfqnsdeqrlaiqk 65 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID------GQAMIRFQNSDEQRLAIQK 65 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS------SCEEEEESSHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec------CeeEEEecCChHHHHHHHH
Confidence 4458999999999999999887666555432 233333 6799999999999999974
No 407
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=48.59 E-value=25 Score=24.60 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHhcc-CCCccceEEEe--eCC--CCCCceEEEEEEcCHHHHHHH
Q 025001 180 FSAGKDDIMDFFKD-FVLSEDSIHIT--MNS--DGRPTGEAFVEFANAEDSKAA 228 (259)
Q Consensus 180 ~~~te~dl~~~F~~-~g~~~~~v~i~--~~~--~g~~~G~afV~F~~~~~A~~A 228 (259)
.+.+..+|++-... |+...+.|.+. ... .|+++|||.| |+|.+.|.+-
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 57788888876654 45443344433 223 4678888865 7788877653
No 408
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=46.81 E-value=23 Score=24.52 Aligned_cols=47 Identities=6% Similarity=0.061 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHhcc-CCCccceEEEe--eCC--CCCCceEEEEEEcCHHHHHH
Q 025001 180 FSAGKDDIMDFFKD-FVLSEDSIHIT--MNS--DGRPTGEAFVEFANAEDSKA 227 (259)
Q Consensus 180 ~~~te~dl~~~F~~-~g~~~~~v~i~--~~~--~g~~~G~afV~F~~~~~A~~ 227 (259)
.+.+..+|++-..+ |+...+.|.+. ... .|+++|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 67888999977755 45433334332 222 4678888865 777777754
No 409
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=42.60 E-value=48 Score=24.16 Aligned_cols=47 Identities=15% Similarity=0.396 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHhcc-CCCccceEEEee--CC--CCCCceEEEEEEcCHHHHHH
Q 025001 180 FSAGKDDIMDFFKD-FVLSEDSIHITM--NS--DGRPTGEAFVEFANAEDSKA 227 (259)
Q Consensus 180 ~~~te~dl~~~F~~-~g~~~~~v~i~~--~~--~g~~~G~afV~F~~~~~A~~ 227 (259)
.+.+..+|++-+.. |+...+.|.+.. .. .|++.|||.| |+|.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 57889999988854 565443444432 22 4678888876 677777765
No 410
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=42.31 E-value=41 Score=24.99 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHhcc-CCCccceEEEeeCC----CCCCceEEEEEEcCHHHHHHH
Q 025001 180 FSAGKDDIMDFFKD-FVLSEDSIHITMNS----DGRPTGEAFVEFANAEDSKAA 228 (259)
Q Consensus 180 ~~~te~dl~~~F~~-~g~~~~~v~i~~~~----~g~~~G~afV~F~~~~~A~~A 228 (259)
.+.+..||++-+.. |+...+.|.+..-. .|++.|||.| |+|.+.|.+-
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 57788899987765 56544444443322 4678888876 6777777653
No 411
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=36.73 E-value=24 Score=24.31 Aligned_cols=47 Identities=9% Similarity=0.193 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhcc-CCCccceEEEeeCC----CCCCceEEEEEEcCHHHHHH
Q 025001 180 FSAGKDDIMDFFKD-FVLSEDSIHITMNS----DGRPTGEAFVEFANAEDSKA 227 (259)
Q Consensus 180 ~~~te~dl~~~F~~-~g~~~~~v~i~~~~----~g~~~G~afV~F~~~~~A~~ 227 (259)
.+.+..+|++-... |+...+.|.+..-. .|+++|||.| |+|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788888876654 44433334443222 3577788855 556555554
No 412
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.19 E-value=72 Score=21.25 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=37.4
Q ss_pred EEcCCCCCCCHHHHHHHhcc-CCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHH
Q 025001 174 RLRGLPFSAGKDDIMDFFKD-FVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAM 229 (259)
Q Consensus 174 ~V~nLp~~~te~dl~~~F~~-~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al 229 (259)
++--.+..++..+|++.++. |+.....|.....+.|.. -|||.+..-.+|....
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~K--KA~V~L~~~~~a~dva 80 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEK--KAYVKLKPEYSASEVA 80 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCE--EEEEEECTTSCHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCce--EEEEEcCCCCcHHHHH
Confidence 34445789999999988877 675444677666554433 4999998877666543
No 413
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=27.80 E-value=1.5e+02 Score=22.59 Aligned_cols=128 Identities=9% Similarity=-0.003 Sum_probs=68.9
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhcCCCceEEEEecCCCCceeEEEEEeCCH---HHHHHHHHh-ccccCCCeEEEEEe
Q 025001 57 PVVRLRGL----PFDCTEVDVAEFFHGLDIVDVLFVHKNNKFTGEAFCVLGYP---LQVDFALQR-NRQNMGRRYVEVFR 128 (259)
Q Consensus 57 ~~vfV~nL----p~~~te~~L~~~F~~~~iv~v~~~~~~g~~~G~afV~F~~~---e~A~~Al~~-~~~~~~~r~i~v~~ 128 (259)
..++++++ ...+.=.||+++|+..|..+|.-+=.+|. |.|.+. ++....|+. ....+ |..+.|.-
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lGf~~V~TyI~SGN------vvF~s~~~~~~l~~~ie~~l~~~f-g~~v~v~v 79 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLGLEKVESYINSGN------IFFTSIDSKAQLVEKLETFFAVHY-PFIQSFSL 79 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHTCEEEEEETTTTE------EEEEECSCHHHHHHHHHHHHHHHC-TTCCCCEE
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcCCccceEEEecCC------EEEecCCCHHHHHHHHHHHHHHhc-CCCCCEEE
Confidence 46778887 46688999999999988888775534442 555433 333444432 12222 22233444
Q ss_pred cchHHHHHHHhhhccccCCCCCCCCCCccCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCC
Q 025001 129 SKRQEYYKAIANEVSDVRGGSPHRSIPRAKSHDEGKDSAVHTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSD 208 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~ 208 (259)
.+..++......-. ... . .....++|.=|+...+.+++.+.........+.+.+..
T Consensus 80 rs~~el~~i~~~~P-----------------f~~---~-~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~~--- 135 (183)
T 2hiy_A 80 LSLEDFEAELENLP-----------------AWW---S-RDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFGK--- 135 (183)
T ss_dssp EEHHHHHHHHTTCC-----------------GGG---G-SCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEECS---
T ss_pred ecHHHHHHHHHhCC-----------------CCc---c-CCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEEC---
Confidence 44455544433210 000 0 12456666666777888887776654432222444431
Q ss_pred CCCceEEEE-EE
Q 025001 209 GRPTGEAFV-EF 219 (259)
Q Consensus 209 g~~~G~afV-~F 219 (259)
+.-|+ .|
T Consensus 136 ----~~iy~~~~ 143 (183)
T 2hiy_A 136 ----LGIFWGKF 143 (183)
T ss_dssp ----SEEEEEEC
T ss_pred ----CEEEEEEe
Confidence 25666 66
No 414
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=27.47 E-value=1.3e+02 Score=19.62 Aligned_cols=58 Identities=17% Similarity=0.376 Sum_probs=39.9
Q ss_pred CCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh-CCCccCCeEEEEEeCCHHHHHH
Q 025001 182 AGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK-DRMTLGSRYIELFPSSHEEMDE 253 (259)
Q Consensus 182 ~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~-~~~~l~gr~i~V~~~~~~~~~~ 253 (259)
-|+++|+.++..|......|.+ .|...+.++..+|-++ ....++-|.-.| .++.+.++
T Consensus 33 ktedelkkyleefrkesqnikv------------lilvsndeeldkakelaqkmeidvrtrkv--tspdeakr 91 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIKV------------LILVSNDEELDKAKELAQKMEIDVRTRKV--TSPDEAKR 91 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEEE------------EEEESSHHHHHHHHHHHHHTTCCEEEEEC--SSHHHHHH
T ss_pred ccHHHHHHHHHHHHhhccCeEE------------EEEEcChHHHHHHHHHHHhhceeeeeeec--CChHHHHH
Confidence 5889999999888644334433 3445677888888877 778888776665 56666544
No 415
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=25.84 E-value=84 Score=20.96 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=29.6
Q ss_pred CceEEEEEEcCHHHHHHHHHh-CC--CccCCeEEEEEeCCHHHHHHHH
Q 025001 211 PTGEAFVEFANAEDSKAAMAK-DR--MTLGSRYIELFPSSHEEMDEAL 255 (259)
Q Consensus 211 ~~G~afV~F~~~~~A~~Al~~-~~--~~l~gr~i~V~~~~~~~~~~~~ 255 (259)
-.||-||++...++...+++. .+ ..+++ +.+.+|+...+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV~gfvg~------pl~~~Ev~~il 90 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRVRGIVPG------TIAIEEIEPLL 90 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTEEEECSS------CCCHHHHHHHH
T ss_pred cCCEEEEEEecchhHHHHHHCCCCceEeCCC------CCCHHHHHHHh
Confidence 679999999999999999876 43 24455 67777777654
No 416
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=21.50 E-value=68 Score=19.93 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=17.7
Q ss_pred eEEEeeCCCCCCceEEEEEEcC
Q 025001 200 SIHITMNSDGRPTGEAFVEFAN 221 (259)
Q Consensus 200 ~v~i~~~~~g~~~G~afV~F~~ 221 (259)
..+++.++...+.|+++|.|++
T Consensus 21 ~arlllnrRps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNRRPPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTBCCSSTTEEEEEETT
T ss_pred hhhhhhccCCCcCceEEEEEec
Confidence 3567777777789999999987
No 417
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.97 E-value=2e+02 Score=19.31 Aligned_cols=73 Identities=14% Similarity=0.316 Sum_probs=51.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh----CCC----ccCCeE
Q 025001 169 HTGILRLRGLPFSAGKDDIMDFFKDFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK----DRM----TLGSRY 240 (259)
Q Consensus 169 ~~~~i~V~nLp~~~te~dl~~~F~~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~----~~~----~l~gr~ 240 (259)
..+-|.|-|+|..+-..++.-.....|-.- .+... + |.|.+.|.+.++..-|+++ |+. ++.|..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyef-ycdyi---d----gqamirfqnsdeqrlaiqkllnhnnnklqieirgqi 82 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEF-YCDYI---D----GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQI 82 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCE-EEEEC---S----SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeE-eeeee---c----CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEccee
Confidence 456789999999999998887777776432 33333 2 4799999999999999974 222 456776
Q ss_pred EEEEeCCHH
Q 025001 241 IELFPSSHE 249 (259)
Q Consensus 241 i~V~~~~~~ 249 (259)
-.|-..-++
T Consensus 83 cdvistipe 91 (129)
T 4eyt_A 83 CDVISTIPE 91 (129)
T ss_dssp EEEECCCCH
T ss_pred eeeeecCCc
Confidence 666444333
No 418
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=20.05 E-value=73 Score=29.64 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=39.1
Q ss_pred cCCCCCCCHHHHHHHhc----cCCCccceEEEeeCCCCCCceEEEEEEcCHHHHHHHHHh
Q 025001 176 RGLPFSAGKDDIMDFFK----DFVLSEDSIHITMNSDGRPTGEAFVEFANAEDSKAAMAK 231 (259)
Q Consensus 176 ~nLp~~~te~dl~~~F~----~~g~~~~~v~i~~~~~g~~~G~afV~F~~~~~A~~Al~~ 231 (259)
+..+.+.+--||..+|- .+|++. .+.|...+.-..+.++++.|.+.++|..|+..
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIIT-eatLrL~P~P~~~~~~~~~f~d~~~a~~av~~ 407 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVIT-EATIKIRPTPEYQKYGSVAFPNFEQGVACLRE 407 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEE-EEEEECEECCSEEEEEEEEESSHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCccee-eeeeeeccCCccccccccccCCchhhhhhHHH
Confidence 34555666668899983 467665 66665555455667899999999999888753
Done!