BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025004
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 322 bits (824), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/255 (64%), Positives = 189/255 (74%), Gaps = 10/255 (3%)
Query: 2 SSSSDAAARSDSHAPLLRPRDPSVSPNA---ARPATLALLLGRATGRGHGPSMLVRETAA 58
S SSD+ A D HAPLLRPR ++ ARP LA+LLGR TG PSMLVRETAA
Sbjct: 3 SYSSDSTAARDQHAPLLRPRHDGSFSSSSSSARPTALAVLLGRITGH-RAPSMLVRETAA 61
Query: 59 RELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLV 118
R LEERR DWGYSKPVVA DI+WN+A V+ SA ML+ T+ ERP+ IR+WIC Y LQCL
Sbjct: 62 RALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLF 121
Query: 119 HVVLVWMEYRRRN-TRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESI 177
HVVLVW EY RRN TRR RD E + ++ D E + +D ST SF KRCESI
Sbjct: 122 HVVLVWSEYWRRNSTRRARDLESYDHEDYNIEYDYEQDSDD-----NSTTYSFVKRCESI 176
Query: 178 NTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALC 237
NT+ SF+WWI+GFYWVV GGD LL AP LYWL+V+FLA DVFFA+FCVVLACL+GIALC
Sbjct: 177 NTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALC 236
Query: 238 CCLPCIIAILYAVAG 252
CCLPCIIA+LYAVAG
Sbjct: 237 CCLPCIIALLYAVAG 251
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 198 bits (503), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/205 (54%), Positives = 146/205 (71%), Gaps = 3/205 (1%)
Query: 49 PSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
PSMLVRETAA +LEER++DW YSKPVV LDI+WN AFV + A+LI++ +E+P+ +R+W
Sbjct: 84 PSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVW 143
Query: 109 ICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRT 168
+ GY +QC +H+ V +EYRRR RR +D GG N+ S+ + +
Sbjct: 144 VVGYGIQCWLHMACVCVEYRRRRRRRHPEDG-GGSGL--TNSSSQQYVSLAQLEDRGETS 200
Query: 169 SFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVL 228
+ K ES NTM SF+WWI+GFYWV +GG L +P+LYWL ++FL FDVFF +FCV L
Sbjct: 201 NPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVAL 260
Query: 229 ACLIGIALCCCLPCIIAILYAVAGQ 253
AC+IG+A+CCCLPCIIAILYAVA Q
Sbjct: 261 ACVIGLAVCCCLPCIIAILYAVADQ 285
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 188 bits (477), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 151/228 (66%), Gaps = 30/228 (13%)
Query: 49 PSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
PSMLVRE AA +LEER++DW YSKPVV LDI+WN AFV V+ A+L+++ E P +R+W
Sbjct: 75 PSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVW 134
Query: 109 ICGYALQCLVHVVLVWMEYRRRNTRR-----------------------VRDDEMGGEDF 145
+ GYALQC++H+V V +EYRRRN RR + ++ +G
Sbjct: 135 LLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRN 194
Query: 146 RDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAP 205
V + S + + + +S K ES NTM SF+WWI+GFYWV +GG L Q +P
Sbjct: 195 SGVQDLS-------LGHLDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESP 247
Query: 206 RLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 253
R+YWL++VFL FDVFF +FCV LAC+IGIA+CCCLPCIIA+LYAVA Q
Sbjct: 248 RIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVADQ 295
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 184 bits (466), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 121/217 (55%), Positives = 153/217 (70%), Gaps = 12/217 (5%)
Query: 49 PSMLVRETAARELEERRADWGYSKPVVALDIMWNSAFVIVSAAMLIITINERPSTRIRLW 108
PSMLVRE AA +LEER++DW YSKPVV LD +WN AFV+V+ A+L+++ +E P+ +R+W
Sbjct: 49 PSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVW 108
Query: 109 ICGYALQCLVHVVLVWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTS--- 165
I GY LQC++H+V V +EYRRRN+RR RD ++ S DEEE + R S
Sbjct: 109 IIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDER 168
Query: 166 ---------TRTSFTKRCESINTMASFLWWIVGFYWVVSGGDLLLQAAPRLYWLAVVFLA 216
SF K ES NTM SF+WW++GFYWV SGG L Q +P+LYWL +VFL
Sbjct: 169 YLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLG 228
Query: 217 FDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 253
FDVFF +FCV LAC+IGIA+CCCLPCIIA+LYAVA Q
Sbjct: 229 FDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQ 265
>sp|P18488|EMS_DROME Homeotic protein empty spiracles OS=Drosophila melanogaster GN=ems
PE=2 SV=2
Length = 497
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 121 VLVWMEYRRRNTRRVR-DDEMGGE--DFRDVNNDSEDEEEDGIV 161
V VW + RR +R++ +DE GGE R+++N S DE++D ++
Sbjct: 435 VKVWFQNRRTKHKRMQQEDEKGGEGGSQRNMHNGSGDEDDDELI 478
>sp|Q2K5Q0|CLPP3_RHIEC ATP-dependent Clp protease proteolytic subunit 3 OS=Rhizobium etli
(strain CFN 42 / ATCC 51251) GN=clpP3 PE=3 SV=1
Length = 194
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 156 EEDGIVYRTSTRTSFTKRCESINTMASFLW---WIVGFYWVVSGGDLLLQAAPR 206
+ED +Y S + +SI+ M F+ W++G WV S G L+ AAPR
Sbjct: 55 DEDIRIYVNSP-GGHVESGDSIHDMVKFIKPKVWMIGTGWVASAGALIYVAAPR 107
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.138 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,696,277
Number of Sequences: 539616
Number of extensions: 3755985
Number of successful extensions: 15405
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 15393
Number of HSP's gapped (non-prelim): 11
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)