Query 025004
Match_columns 259
No_of_seqs 114 out of 132
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 18:19:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025004.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025004hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xioa_ f.13.1.1 (A:) Sensory 35.8 13 0.00095 29.8 3.5 107 58-195 65-186 (226)
2 d1uaza_ f.13.1.1 (A:) Archaerh 31.1 15 0.0011 30.0 3.1 101 64-194 88-197 (236)
3 d1e12a_ f.13.1.1 (A:) Halorhod 27.4 47 0.0034 26.7 5.7 100 64-195 85-194 (239)
4 d1v54l_ f.23.6.1 (L:) Mitochon 27.1 43 0.0032 21.3 4.2 32 197-232 7-38 (46)
5 d1oeda_ f.36.1.1 (A:) Acetylch 21.9 57 0.0041 25.1 5.0 49 74-122 67-115 (227)
6 d1m0ka_ f.13.1.1 (A:) Bacterio 16.1 47 0.0034 26.6 3.3 101 64-194 78-187 (227)
7 d1v54g_ f.23.2.1 (G:) Mitochon 7.5 1.2E+02 0.0087 21.1 2.6 8 239-246 24-31 (84)
8 d1oedc_ f.36.1.1 (C:) Acetylch 7.2 1.1E+02 0.0082 23.3 2.6 50 75-124 68-117 (260)
9 d1xmeb2 f.17.2.1 (B:3-36) Bact 6.5 67 0.0049 18.8 0.6 20 68-87 10-29 (34)
10 d1v54j_ f.23.4.1 (J:) Mitochon 6.4 2E+02 0.015 18.7 3.1 24 207-230 31-54 (58)
No 1
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=35.78 E-value=13 Score=29.78 Aligned_cols=107 Identities=12% Similarity=0.318 Sum_probs=63.5
Q ss_pred HHHHH-HhhcCCCCCCchhhHHHHHHH------------HHHHHHHHHHHhc-cCC-CCCchHHHHHHHhhhhHHHHHHH
Q 025004 58 ARELE-ERRADWGYSKPVVALDIMWNS------------AFVIVSAAMLIIT-INE-RPSTRIRLWICGYALQCLVHVVL 122 (259)
Q Consensus 58 a~~le-~r~~dwaySk~~v~LelvwnL------------aqIvaAivVL~lS-~~E-~P~~PLr~WIvGYa~gCv~hl~l 122 (259)
.+|.. -|--||.=.-|.+.+++.+.+ ..++++.+++..- -.| .+.. -.- .+.|+++|++.+.+
T Consensus 65 ~~~v~~~RYiDW~lTtPlll~~l~l~~~~~~~~~~~~~~~li~~~~~Mi~~G~~g~~~~~~-~~~-~~~f~~~~~~f~~i 142 (226)
T d1xioa_ 65 GQIAHYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSERD-WVR-YLWYICGVCAFLII 142 (226)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHCSSH-HHH-HHHHHHHHHHHHHH
T ss_pred CceeeHHHHHHHHHcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccch-HHH-HHHHHHHHHHHHHH
Confidence 34444 399999999999999997653 2234445554433 233 2222 113 34789999998888
Q ss_pred HHHHHHHhhcccCCCccCCCCCCCCCCCCCCccccccccccccchhhHHHHhHHHHHHHHHHHHhhheeeeee
Q 025004 123 VWMEYRRRNTRRVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVS 195 (259)
Q Consensus 123 V~~rYr~Rn~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGf~WV~~ 195 (259)
+|.-|..-.+...+ ......+.+...-..+.++|.+=+..|.+.
T Consensus 143 ~y~l~~~~~~~~~~-----------------------------~~~~~~~~~~~l~~~~~v~W~~YPi~~~l~ 186 (226)
T d1xioa_ 143 LWGIWNPLRAKTRT-----------------------------QSSELANLYDKLVTYFTVLWIGYPIVWIIG 186 (226)
T ss_dssp HHHHHTHHHHHHTT-----------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcc-----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88655432221100 012233444555566788999989899983
No 2
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=31.11 E-value=15 Score=30.02 Aligned_cols=101 Identities=16% Similarity=0.368 Sum_probs=63.3
Q ss_pred hhcCCCCCCchhhHHHHHH-------H-HHHHHHHHHHHhc-cCCCCCchHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Q 025004 64 RRADWGYSKPVVALDIMWN-------S-AFVIVSAAMLIIT-INERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRR 134 (259)
Q Consensus 64 r~~dwaySk~~v~Lelvwn-------L-aqIvaAivVL~lS-~~E~P~~PLr~WIvGYa~gCv~hl~lV~~rYr~Rn~~~ 134 (259)
|--||.=.-|.+.+|+... + -.++++++++..- -.|--..|..-| +.|+++|+..+.++|.-+..-.+..
T Consensus 88 RYiDW~lTtPLll~~l~ll~~~~~~~~~~li~a~~~Miv~G~~ge~~~~~~~~~-~~~~~~~~~~~~i~y~l~~~~~~~~ 166 (236)
T d1uaza_ 88 RYADWLFTTPLLLLDLALLAKVDRVSIGTLVGVDALMIVTGLVGALSHTPLARY-TWWLFSTICMIVVLYFLATSLRAAA 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHH-HHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889988889888887653 1 2234444444443 244333444333 5799999999999887665433221
Q ss_pred CCCccCCCCCCCCCCCCCCccccccccccccchhhHHHHhHHHHHHHHHHHHhhheeeee
Q 025004 135 VRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVV 194 (259)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGf~WV~ 194 (259)
.+ ....+.+-++..-.++.++|-+=...|++
T Consensus 167 ~~-----------------------------~~~~~~~~~~~l~~~~~v~W~iYPi~~~l 197 (236)
T d1uaza_ 167 KE-----------------------------RGPEVASTFNTLTALVLVLWTAYPILWII 197 (236)
T ss_dssp TS-----------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 01233445666667778899998888988
No 3
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=27.44 E-value=47 Score=26.73 Aligned_cols=100 Identities=17% Similarity=0.332 Sum_probs=61.5
Q ss_pred hhcCCCCCCchhhHHHHHH-------H-HHHHHHHHHHHhc-cCC-CCCchHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Q 025004 64 RRADWGYSKPVVALDIMWN-------S-AFVIVSAAMLIIT-INE-RPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTR 133 (259)
Q Consensus 64 r~~dwaySk~~v~Lelvwn-------L-aqIvaAivVL~lS-~~E-~P~~PLr~WIvGYa~gCv~hl~lV~~rYr~Rn~~ 133 (259)
|--||.=.-|.+.+|+.+. + -.++++.+++..- -.| .+....--| +.|+++|++.+.++|.-+......
T Consensus 85 RYiDW~lTtPLll~~l~l~~~~~~~~~~~li~a~~~Miv~G~~ge~~~~~~~~~w-~~~~i~~~~~~~i~y~l~~~~~~~ 163 (239)
T d1e12a_ 85 RYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLFRW-AFYAISCAFFVVVLSALVTDWAAS 163 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHH-HHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHccCchhHHH-HHHHHHHHHHHHHHHHHhccchhh
Confidence 8889998999999998763 2 3344455555443 244 332222344 678999999999998877654321
Q ss_pred cCCCccCCCCCCCCCCCCCCccccccccccccchhhHHHHhHHHHHHHHHHHHhhheeeeee
Q 025004 134 RVRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVVS 195 (259)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGf~WV~~ 195 (259)
.. + .+..+.++..--.+.++|.+=...|...
T Consensus 164 ~~-~------------------------------~~~~~~~~~l~~~~~v~W~iYPi~~~l~ 194 (239)
T d1e12a_ 164 AS-S------------------------------AGTAEIFDTLRVLTVVLWLGYPIVWAVG 194 (239)
T ss_dssp HH-H------------------------------HTCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hh-h------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 10 0 0111223344455678998888889883
No 4
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.07 E-value=43 Score=21.29 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=22.0
Q ss_pred CccccccCchhHHHHHHHHhhhhHHHHHHHHHHHHH
Q 025004 197 GDLLLQAAPRLYWLAVVFLAFDVFFAIFCVVLACLI 232 (259)
Q Consensus 197 g~ss~~daP~LYwLcivFLAFd~ifvvfcyal~cli 232 (259)
|..+.-.--+-|.|...|-+|=.. +.+.||+|
T Consensus 7 G~NLPFsv~Nk~rLla~m~~~fGs----gfa~PF~i 38 (46)
T d1v54l_ 7 GKNIPFSVENKWRLLAMMTLFFGS----GFAAPFFI 38 (46)
T ss_dssp TTSSSSCCSSHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHHhc----cccchHHH
Confidence 344555556778888777765444 88888876
No 5
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=21.87 E-value=57 Score=25.06 Aligned_cols=49 Identities=6% Similarity=0.267 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHhhhhHHHHHHH
Q 025004 74 VVALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVL 122 (259)
Q Consensus 74 ~v~LelvwnLaqIvaAivVL~lS~~E~P~~PLr~WIvGYa~gCv~hl~l 122 (259)
++..-++....-++.+++|+.+.+++....|..-|+--..++++.-+.+
T Consensus 67 y~~~~~~~v~~sli~tiiV~~l~~~~~~~~~~p~w~r~~~~~~l~~~l~ 115 (227)
T d1oeda_ 67 YMLFTMIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMF 115 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhheeccCCCCCCCchHHHHHHHHhhhHHhc
Confidence 3444555555556667788888776665666666776666666666554
No 6
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=16.06 E-value=47 Score=26.59 Aligned_cols=101 Identities=13% Similarity=0.295 Sum_probs=60.1
Q ss_pred hhcCCCCCCchhhHHHHHHH-------HHHHH-HHHHHHhc-cCCCCCchHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Q 025004 64 RRADWGYSKPVVALDIMWNS-------AFVIV-SAAMLIIT-INERPSTRIRLWICGYALQCLVHVVLVWMEYRRRNTRR 134 (259)
Q Consensus 64 r~~dwaySk~~v~LelvwnL-------aqIva-AivVL~lS-~~E~P~~PLr~WIvGYa~gCv~hl~lV~~rYr~Rn~~~ 134 (259)
|--||.=.-|.+.+|+.... ...+. +.+++..- -.|--..+-.-| ++|+++|+..+.++|.-|..-.+..
T Consensus 78 RYiDWllTtPLll~~l~li~~~~~~~~~~li~a~~~Mi~~G~~g~~~~~~~~k~-~~~~is~~~f~~i~~~l~~~~~~~a 156 (227)
T d1m0ka_ 78 RYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRF-VWWAISTAAMLYILYVLFFGFTSKA 156 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899888899988886532 22233 33333221 123111111234 5799999999999987776532211
Q ss_pred CCCccCCCCCCCCCCCCCCccccccccccccchhhHHHHhHHHHHHHHHHHHhhheeeee
Q 025004 135 VRDDEMGGEDFRDVNNDSEDEEEDGIVYRTSTRTSFTKRCESINTMASFLWWIVGFYWVV 194 (259)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~k~lesalt~Ff~VWfVVGf~WV~ 194 (259)
. + ....+.+.++..-.+..++|.+=...|..
T Consensus 157 ~---~--------------------------~~~~~~~~~~~l~~~~~v~W~iYPI~~~l 187 (227)
T d1m0ka_ 157 E---S--------------------------MRPEVASTFKVLRNVTVVLWSAYPVVWLI 187 (227)
T ss_dssp ----C--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---h--------------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 01234455666667778999999999987
No 7
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.49 E-value=1.2e+02 Score=21.14 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=4.0
Q ss_pred hHHHHHHH
Q 025004 239 CLPCIIAI 246 (259)
Q Consensus 239 CLPcIIai 246 (259)
|+|||+..
T Consensus 24 a~P~i~l~ 31 (84)
T d1v54g_ 24 ALPSVALC 31 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555533
No 8
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.19 E-value=1.1e+02 Score=23.31 Aligned_cols=50 Identities=6% Similarity=0.068 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHhhhhHHHHHHHHH
Q 025004 75 VALDIMWNSAFVIVSAAMLIITINERPSTRIRLWICGYALQCLVHVVLVW 124 (259)
Q Consensus 75 v~LelvwnLaqIvaAivVL~lS~~E~P~~PLr~WIvGYa~gCv~hl~lV~ 124 (259)
..+-++....-++.+++|+.+.++.....|+--|+=-..++.+.-+.++-
T Consensus 68 ~~~~~~~v~~s~~~t~~Vl~~~~~~~~~~~~p~w~R~~~l~~l~~~l~m~ 117 (260)
T d1oedc_ 68 LMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMS 117 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHhheeeeecccccCccchHHHHHHHHhccHHHccc
Confidence 34455555556667777888876554444566677777777777776654
No 9
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=6.50 E-value=67 Score=18.77 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=15.1
Q ss_pred CCCCCchhhHHHHHHHHHHH
Q 025004 68 WGYSKPVVALDIMWNSAFVI 87 (259)
Q Consensus 68 waySk~~v~LelvwnLaqIv 87 (259)
.+|.|.|+...+....+||.
T Consensus 10 layekgwlafslamlfvfia 29 (34)
T d1xmeb2 10 LAYEKGWLAFSLAMLFVFIA 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 46888998888777777664
No 10
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.36 E-value=2e+02 Score=18.67 Aligned_cols=24 Identities=17% Similarity=0.505 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHH
Q 025004 207 LYWLAVVFLAFDVFFAIFCVVLAC 230 (259)
Q Consensus 207 LYwLcivFLAFd~ifvvfcyal~c 230 (259)
||++++++-..+.++.+++...++
T Consensus 31 LYr~Tm~L~~~G~~~s~~~l~~a~ 54 (58)
T d1v54j_ 31 LYRVTMTLCLGGTLYSLYCLGWAS 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Done!