Query 025005
Match_columns 259
No_of_seqs 151 out of 2710
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2524 Predicted transcriptio 99.8 5.1E-20 1.1E-24 141.7 11.2 126 34-200 165-291 (294)
2 COG2524 Predicted transcriptio 99.8 2.1E-19 4.5E-24 138.3 10.7 114 140-258 170-283 (294)
3 KOG1764 5'-AMP-activated prote 99.7 7.6E-17 1.7E-21 136.0 16.9 224 3-257 96-350 (381)
4 COG3620 Predicted transcriptio 99.7 3.5E-17 7.7E-22 117.0 11.2 121 39-199 63-183 (187)
5 PRK14869 putative manganese-de 99.7 3.9E-17 8.4E-22 145.9 12.9 210 41-259 68-297 (546)
6 cd04619 CBS_pair_6 The CBS dom 99.7 3E-16 6.5E-21 111.4 12.4 106 154-259 3-109 (114)
7 cd04630 CBS_pair_17 The CBS do 99.7 8.4E-16 1.8E-20 109.0 12.5 106 153-259 2-109 (114)
8 COG3448 CBS-domain-containing 99.7 4.4E-16 9.6E-21 122.4 11.7 132 37-202 241-374 (382)
9 cd04641 CBS_pair_28 The CBS do 99.7 1.1E-15 2.4E-20 109.5 12.5 107 153-259 2-115 (120)
10 PRK15094 magnesium/cobalt effl 99.7 2.4E-15 5.3E-20 123.3 15.7 173 20-236 48-228 (292)
11 cd04618 CBS_pair_5 The CBS dom 99.7 8.8E-16 1.9E-20 105.9 11.0 89 153-259 2-93 (98)
12 cd04603 CBS_pair_KefB_assoc Th 99.7 1.6E-15 3.5E-20 107.1 11.9 103 154-259 3-106 (111)
13 cd04617 CBS_pair_4 The CBS dom 99.7 2.4E-15 5.2E-20 107.4 12.7 106 153-259 2-113 (118)
14 COG3620 Predicted transcriptio 99.7 9.4E-16 2E-20 109.7 9.3 112 142-258 65-176 (187)
15 TIGR00400 mgtE Mg2+ transporte 99.6 6.1E-16 1.3E-20 134.6 9.7 174 19-246 111-291 (449)
16 cd04587 CBS_pair_CAP-ED_DUF294 99.6 6.5E-15 1.4E-19 104.1 12.6 107 153-259 2-108 (113)
17 TIGR03520 GldE gliding motilit 99.6 1.2E-14 2.6E-19 124.7 16.4 163 30-237 180-350 (408)
18 PRK10892 D-arabinose 5-phospha 99.6 2.3E-15 5E-20 126.3 11.7 118 140-259 200-318 (326)
19 cd04627 CBS_pair_14 The CBS do 99.6 5.2E-15 1.1E-19 106.4 11.8 107 153-259 2-118 (123)
20 cd04622 CBS_pair_9 The CBS dom 99.6 1E-14 2.2E-19 103.1 13.0 107 153-259 2-108 (113)
21 COG3448 CBS-domain-containing 99.6 2.7E-15 5.8E-20 118.0 10.5 118 139-258 242-364 (382)
22 cd04593 CBS_pair_EriC_assoc_ba 99.6 8.5E-15 1.8E-19 104.0 12.1 106 153-259 2-110 (115)
23 cd04623 CBS_pair_10 The CBS do 99.6 8.8E-15 1.9E-19 103.3 12.1 106 153-259 2-108 (113)
24 cd04802 CBS_pair_3 The CBS dom 99.6 1.9E-14 4.1E-19 101.6 13.1 106 153-259 2-107 (112)
25 cd04607 CBS_pair_NTP_transfera 99.6 1.4E-14 3.1E-19 102.5 12.3 104 154-259 4-108 (113)
26 cd04625 CBS_pair_12 The CBS do 99.6 1.6E-14 3.5E-19 101.9 12.5 106 153-259 2-107 (112)
27 cd04620 CBS_pair_7 The CBS dom 99.6 1.2E-14 2.7E-19 103.1 11.9 106 153-259 2-110 (115)
28 PRK07807 inosine 5-monophospha 99.6 8.3E-15 1.8E-19 127.2 13.0 129 122-259 69-198 (479)
29 cd04600 CBS_pair_HPP_assoc Thi 99.6 1.1E-14 2.4E-19 104.7 11.7 108 152-259 2-119 (124)
30 TIGR01303 IMP_DH_rel_1 IMP deh 99.6 1.2E-14 2.5E-19 126.2 13.3 131 120-259 66-196 (475)
31 PRK11543 gutQ D-arabinose 5-ph 99.6 6.7E-15 1.5E-19 123.3 11.4 117 141-259 196-313 (321)
32 cd04611 CBS_pair_PAS_GGDEF_DUF 99.6 3.1E-14 6.7E-19 100.2 13.0 105 153-259 2-106 (111)
33 cd04608 CBS_pair_PALP_assoc Th 99.6 6.2E-15 1.3E-19 106.3 9.5 107 152-259 2-118 (124)
34 cd04615 CBS_pair_2 The CBS dom 99.6 1.5E-14 3.3E-19 102.3 11.3 104 154-258 3-107 (113)
35 cd04588 CBS_pair_CAP-ED_DUF294 99.6 3.1E-14 6.8E-19 100.1 12.8 104 153-259 2-105 (110)
36 cd04618 CBS_pair_5 The CBS dom 99.6 2.2E-14 4.8E-19 98.9 11.7 91 50-196 2-96 (98)
37 cd04639 CBS_pair_26 The CBS do 99.6 1.9E-14 4E-19 101.5 11.5 104 153-259 2-106 (111)
38 cd04613 CBS_pair_SpoIVFB_EriC_ 99.6 1.8E-14 3.9E-19 101.9 11.5 106 153-259 2-109 (114)
39 cd04631 CBS_pair_18 The CBS do 99.6 1.7E-14 3.7E-19 103.9 11.4 106 153-259 2-120 (125)
40 cd04643 CBS_pair_30 The CBS do 99.6 1.5E-14 3.4E-19 102.7 11.0 105 153-259 2-111 (116)
41 cd04801 CBS_pair_M50_like This 99.6 2.6E-14 5.6E-19 101.3 12.0 104 153-259 2-109 (114)
42 cd04800 CBS_pair_CAP-ED_DUF294 99.6 3.3E-14 7.1E-19 100.2 12.3 105 153-259 2-106 (111)
43 cd04605 CBS_pair_MET2_assoc Th 99.6 3.1E-14 6.8E-19 100.1 12.1 103 152-259 2-105 (110)
44 cd04642 CBS_pair_29 The CBS do 99.6 1.8E-14 3.9E-19 104.1 11.0 105 153-258 2-120 (126)
45 cd04604 CBS_pair_KpsF_GutQ_ass 99.6 2.4E-14 5.2E-19 101.3 11.4 106 152-258 2-108 (114)
46 cd04624 CBS_pair_11 The CBS do 99.6 4E-14 8.7E-19 99.9 12.2 105 153-259 2-107 (112)
47 cd04803 CBS_pair_15 The CBS do 99.6 2.7E-14 5.9E-19 102.4 11.2 107 153-259 2-117 (122)
48 cd04629 CBS_pair_16 The CBS do 99.6 2.2E-14 4.7E-19 101.6 10.3 106 153-259 2-109 (114)
49 cd04582 CBS_pair_ABC_OpuCA_ass 99.6 4.3E-14 9.3E-19 98.7 11.5 99 153-259 2-101 (106)
50 cd04595 CBS_pair_DHH_polyA_Pol 99.6 6.5E-14 1.4E-18 98.5 12.5 104 152-259 2-105 (110)
51 cd04590 CBS_pair_CorC_HlyC_ass 99.6 4.8E-14 1E-18 99.3 11.8 103 153-259 2-106 (111)
52 cd04589 CBS_pair_CAP-ED_DUF294 99.6 6.9E-14 1.5E-18 98.6 12.6 105 153-259 2-106 (111)
53 cd04621 CBS_pair_8 The CBS dom 99.6 3.2E-14 6.9E-19 104.1 11.1 106 153-259 2-130 (135)
54 cd04640 CBS_pair_27 The CBS do 99.6 3.1E-14 6.6E-19 102.9 10.8 106 154-259 3-121 (126)
55 cd04614 CBS_pair_1 The CBS dom 99.6 2.5E-14 5.5E-19 98.3 9.8 89 153-259 2-91 (96)
56 cd04586 CBS_pair_BON_assoc Thi 99.6 2.4E-14 5.2E-19 104.7 10.3 107 152-259 2-130 (135)
57 cd04583 CBS_pair_ABC_OpuCA_ass 99.6 4.5E-14 9.7E-19 99.1 11.0 102 152-259 2-104 (109)
58 cd04596 CBS_pair_DRTGG_assoc T 99.6 4.7E-14 1E-18 99.0 11.0 101 152-259 2-103 (108)
59 cd04585 CBS_pair_ACT_assoc2 Th 99.6 5.8E-14 1.3E-18 100.4 11.7 107 153-259 2-117 (122)
60 cd04633 CBS_pair_20 The CBS do 99.6 5.2E-14 1.1E-18 100.7 11.4 106 153-259 2-116 (121)
61 cd04632 CBS_pair_19 The CBS do 99.6 6.1E-14 1.3E-18 101.5 11.6 107 153-259 2-123 (128)
62 cd04636 CBS_pair_23 The CBS do 99.6 5.6E-14 1.2E-18 102.3 11.2 106 153-259 2-127 (132)
63 cd04626 CBS_pair_13 The CBS do 99.6 8.1E-14 1.8E-18 98.2 11.6 104 153-259 2-106 (111)
64 cd04635 CBS_pair_22 The CBS do 99.6 5.4E-14 1.2E-18 100.8 10.6 107 153-259 2-117 (122)
65 cd04603 CBS_pair_KefB_assoc Th 99.5 1.2E-13 2.6E-18 97.4 11.6 106 50-196 2-109 (111)
66 cd04599 CBS_pair_GGDEF_assoc2 99.5 1.4E-13 3E-18 95.9 11.6 99 153-259 2-100 (105)
67 PRK10892 D-arabinose 5-phospha 99.5 8.6E-14 1.9E-18 116.8 12.5 120 39-197 200-322 (326)
68 TIGR00393 kpsF KpsF/GutQ famil 99.5 6.7E-14 1.4E-18 114.4 11.2 112 142-257 155-268 (268)
69 cd04601 CBS_pair_IMPDH This cd 99.5 1.2E-13 2.6E-18 97.0 11.0 102 152-259 2-105 (110)
70 cd04612 CBS_pair_SpoIVFB_EriC_ 99.5 2.5E-13 5.5E-18 95.5 12.1 104 153-258 2-105 (111)
71 cd04609 CBS_pair_PALP_assoc2 T 99.5 2.1E-13 4.6E-18 95.7 11.5 104 153-259 2-105 (110)
72 PRK15094 magnesium/cobalt effl 99.5 8.2E-14 1.8E-18 114.3 10.5 117 139-259 64-182 (292)
73 cd04614 CBS_pair_1 The CBS dom 99.5 2.8E-13 6E-18 93.0 11.6 91 50-196 2-94 (96)
74 cd04602 CBS_pair_IMPDH_2 This 99.5 1.6E-13 3.6E-18 97.2 10.6 101 153-259 3-109 (114)
75 PRK05567 inosine 5'-monophosph 99.5 3.2E-13 6.8E-18 118.6 14.5 164 42-256 88-257 (486)
76 PRK01862 putative voltage-gate 99.5 9.2E-14 2E-18 124.9 11.4 120 137-259 442-564 (574)
77 cd04610 CBS_pair_ParBc_assoc T 99.5 3.3E-13 7E-18 94.4 11.5 101 152-259 2-102 (107)
78 cd04641 CBS_pair_28 The CBS do 99.5 2.1E-13 4.6E-18 97.6 10.7 116 49-196 1-118 (120)
79 cd04637 CBS_pair_24 The CBS do 99.5 3.3E-13 7.1E-18 96.7 11.7 107 153-259 2-117 (122)
80 PRK11543 gutQ D-arabinose 5-ph 99.5 2E-13 4.2E-18 114.5 11.7 118 40-197 196-317 (321)
81 cd04619 CBS_pair_6 The CBS dom 99.5 1.6E-13 3.4E-18 97.3 9.5 94 1-94 19-113 (114)
82 COG2905 Predicted signal-trans 99.5 9.6E-14 2.1E-18 118.4 9.6 113 141-257 148-261 (610)
83 COG0517 FOG: CBS domain [Gener 99.5 7.3E-13 1.6E-17 94.1 12.8 106 152-259 7-114 (117)
84 PRK07807 inosine 5-monophospha 99.5 7.3E-13 1.6E-17 115.1 15.3 159 38-247 86-246 (479)
85 PTZ00314 inosine-5'-monophosph 99.5 3.6E-13 7.9E-18 117.8 13.4 108 144-259 98-211 (495)
86 cd04630 CBS_pair_17 The CBS do 99.5 2.4E-13 5.3E-18 96.3 10.0 94 1-94 19-113 (114)
87 cd04801 CBS_pair_M50_like This 99.5 5E-13 1.1E-17 94.6 11.6 109 49-196 1-112 (114)
88 TIGR01303 IMP_DH_rel_1 IMP deh 99.5 1.4E-12 3E-17 113.3 16.4 160 37-247 84-244 (475)
89 cd04617 CBS_pair_4 The CBS dom 99.5 6.3E-13 1.4E-17 94.8 11.9 110 50-196 2-116 (118)
90 cd04599 CBS_pair_GGDEF_assoc2 99.5 8.8E-13 1.9E-17 91.8 12.2 102 50-196 2-103 (105)
91 cd02205 CBS_pair The CBS domai 99.5 7.9E-13 1.7E-17 92.7 11.8 105 153-258 2-107 (113)
92 cd04595 CBS_pair_DHH_polyA_Pol 99.5 1.6E-12 3.4E-17 91.4 13.3 107 49-196 2-108 (110)
93 PRK11573 hypothetical protein; 99.5 2.3E-12 5E-17 110.7 16.7 166 31-236 177-350 (413)
94 COG1253 TlyC Hemolysins and re 99.5 3E-12 6.5E-17 111.0 17.1 174 19-237 186-368 (429)
95 cd04606 CBS_pair_Mg_transporte 99.5 4.7E-13 1E-17 94.0 10.0 96 157-259 2-103 (109)
96 cd04800 CBS_pair_CAP-ED_DUF294 99.5 1.5E-12 3.4E-17 91.6 12.6 109 49-196 1-109 (111)
97 cd04600 CBS_pair_HPP_assoc Thi 99.5 1.2E-12 2.6E-17 94.0 12.0 119 49-196 2-122 (124)
98 cd04594 CBS_pair_EriC_assoc_ar 99.5 1.1E-12 2.3E-17 91.4 11.3 96 155-259 4-99 (104)
99 cd04596 CBS_pair_DRTGG_assoc T 99.5 8.8E-13 1.9E-17 92.4 10.8 103 49-196 2-106 (108)
100 COG4109 Predicted transcriptio 99.5 6.4E-13 1.4E-17 107.2 11.2 131 25-200 172-306 (432)
101 cd04615 CBS_pair_2 The CBS dom 99.5 1.7E-12 3.7E-17 91.7 12.3 108 50-196 2-111 (113)
102 COG4109 Predicted transcriptio 99.5 3.2E-13 6.9E-18 108.9 9.4 111 142-259 188-299 (432)
103 cd04605 CBS_pair_MET2_assoc Th 99.5 2.6E-12 5.5E-17 90.3 12.9 106 48-196 1-108 (110)
104 cd04621 CBS_pair_8 The CBS dom 99.5 1.8E-12 4E-17 94.8 12.2 131 50-196 2-133 (135)
105 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 2.9E-12 6.2E-17 89.4 12.5 101 50-196 2-104 (106)
106 cd04634 CBS_pair_21 The CBS do 99.4 1.7E-12 3.7E-17 95.9 11.9 106 153-259 2-138 (143)
107 cd04639 CBS_pair_26 The CBS do 99.4 1.7E-12 3.7E-17 91.3 11.4 106 50-196 2-109 (111)
108 cd04629 CBS_pair_16 The CBS do 99.4 2E-12 4.3E-17 91.4 11.6 110 50-196 2-112 (114)
109 TIGR03520 GldE gliding motilit 99.4 7.7E-13 1.7E-17 113.6 11.2 114 139-258 188-303 (408)
110 PRK07107 inosine 5-monophospha 99.4 8.2E-13 1.8E-17 115.5 11.4 101 154-259 107-213 (502)
111 TIGR01302 IMP_dehydrog inosine 99.4 1.8E-12 3.9E-17 112.8 13.4 109 143-259 81-194 (450)
112 cd04584 CBS_pair_ACT_assoc Thi 99.4 1.2E-12 2.5E-17 93.6 10.4 105 153-258 2-115 (121)
113 cd04626 CBS_pair_13 The CBS do 99.4 3E-12 6.5E-17 90.1 12.3 107 50-196 2-109 (111)
114 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 3.7E-12 8E-17 89.5 12.7 107 50-196 2-109 (111)
115 cd04802 CBS_pair_3 The CBS dom 99.4 3.9E-12 8.5E-17 89.6 12.8 109 50-196 2-110 (112)
116 cd04591 CBS_pair_EriC_assoc_eu 99.4 2.4E-12 5.2E-17 89.9 11.5 95 152-259 2-100 (105)
117 PLN02274 inosine-5'-monophosph 99.4 9.8E-13 2.1E-17 115.2 11.6 102 152-259 108-215 (505)
118 cd04625 CBS_pair_12 The CBS do 99.4 3.7E-12 8E-17 89.8 12.6 109 50-196 2-110 (112)
119 cd04607 CBS_pair_NTP_transfera 99.4 2.4E-12 5.2E-17 90.9 11.5 107 50-196 3-111 (113)
120 cd04589 CBS_pair_CAP-ED_DUF294 99.4 3.4E-12 7.4E-17 89.8 12.2 108 50-196 2-109 (111)
121 cd04586 CBS_pair_BON_assoc Thi 99.4 1.7E-12 3.7E-17 94.8 11.0 131 49-196 2-133 (135)
122 cd04631 CBS_pair_18 The CBS do 99.4 2.7E-12 5.9E-17 92.3 11.9 120 49-196 1-123 (125)
123 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 3.5E-12 7.7E-17 89.6 12.2 108 49-196 1-109 (111)
124 cd04585 CBS_pair_ACT_assoc2 Th 99.4 3E-12 6.5E-17 91.5 12.0 118 50-196 2-120 (122)
125 cd04588 CBS_pair_CAP-ED_DUF294 99.4 4.6E-12 9.9E-17 89.0 12.8 107 49-196 1-108 (110)
126 cd04608 CBS_pair_PALP_assoc Th 99.4 1.1E-12 2.3E-17 94.6 9.5 110 49-197 2-122 (124)
127 COG2905 Predicted signal-trans 99.4 5.1E-13 1.1E-17 114.0 8.9 95 1-96 175-269 (610)
128 cd04594 CBS_pair_EriC_assoc_ar 99.4 5.5E-12 1.2E-16 87.8 12.8 99 52-196 4-102 (104)
129 cd04636 CBS_pair_23 The CBS do 99.4 2.7E-12 5.9E-17 93.4 11.6 128 50-196 2-130 (132)
130 cd04593 CBS_pair_EriC_assoc_ba 99.4 4E-12 8.7E-17 90.1 12.2 108 50-196 2-113 (115)
131 cd04627 CBS_pair_14 The CBS do 99.4 5.2E-12 1.1E-16 90.7 12.8 116 50-195 2-120 (123)
132 cd04637 CBS_pair_24 The CBS do 99.4 8.4E-12 1.8E-16 89.4 13.7 118 50-196 2-120 (122)
133 cd04633 CBS_pair_20 The CBS do 99.4 5.6E-12 1.2E-16 90.1 12.7 119 49-196 1-119 (121)
134 cd04623 CBS_pair_10 The CBS do 99.4 2E-12 4.2E-17 91.2 10.2 93 2-94 20-112 (113)
135 PRK01862 putative voltage-gate 99.4 2E-12 4.3E-17 116.4 12.4 124 37-199 443-570 (574)
136 PRK05567 inosine 5'-monophosph 99.4 1.8E-12 4E-17 113.8 11.9 108 144-259 89-198 (486)
137 cd04624 CBS_pair_11 The CBS do 99.4 5.2E-12 1.1E-16 89.0 12.1 107 50-196 2-110 (112)
138 cd04610 CBS_pair_ParBc_assoc T 99.4 5.3E-12 1.1E-16 88.2 11.9 103 49-196 2-105 (107)
139 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 7.8E-12 1.7E-16 87.6 12.8 104 49-196 2-107 (109)
140 TIGR00400 mgtE Mg2+ transporte 99.4 1.4E-12 3.1E-17 113.6 10.9 112 139-259 128-245 (449)
141 cd04598 CBS_pair_GGDEF_assoc T 99.4 2.3E-12 4.9E-17 91.9 10.0 107 153-259 2-114 (119)
142 cd04642 CBS_pair_29 The CBS do 99.4 3.8E-12 8.1E-17 91.9 11.2 121 50-196 2-124 (126)
143 cd04622 CBS_pair_9 The CBS dom 99.4 6.8E-12 1.5E-16 88.5 12.2 109 50-196 2-111 (113)
144 PRK07107 inosine 5-monophospha 99.4 8.5E-12 1.8E-16 109.2 14.9 156 42-245 95-260 (502)
145 cd04643 CBS_pair_30 The CBS do 99.4 5.9E-12 1.3E-16 89.3 11.6 111 50-196 2-114 (116)
146 cd04620 CBS_pair_7 The CBS dom 99.4 5E-12 1.1E-16 89.6 11.2 108 50-196 2-113 (115)
147 cd04803 CBS_pair_15 The CBS do 99.4 5.9E-12 1.3E-16 90.1 11.7 117 50-196 2-120 (122)
148 cd04592 CBS_pair_EriC_assoc_eu 99.4 4.9E-12 1.1E-16 92.1 11.4 97 153-249 2-118 (133)
149 cd04587 CBS_pair_CAP-ED_DUF294 99.4 6.6E-12 1.4E-16 88.6 11.8 109 50-196 2-111 (113)
150 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 5.8E-12 1.3E-16 88.9 11.3 108 50-196 2-112 (114)
151 cd04590 CBS_pair_CorC_HlyC_ass 99.4 8.9E-12 1.9E-16 87.6 12.2 105 50-196 2-109 (111)
152 PTZ00314 inosine-5'-monophosph 99.4 2E-11 4.3E-16 107.0 16.8 114 42-197 97-215 (495)
153 TIGR01137 cysta_beta cystathio 99.4 4.2E-12 9.2E-17 111.4 11.9 117 137-259 330-447 (454)
154 PRK14869 putative manganese-de 99.4 4.9E-12 1.1E-16 113.3 12.4 129 127-257 231-384 (546)
155 PLN02274 inosine-5'-monophosph 99.4 3.8E-11 8.2E-16 105.3 17.4 114 44-199 103-221 (505)
156 cd04635 CBS_pair_22 The CBS do 99.4 7.3E-12 1.6E-16 89.7 10.9 118 49-196 1-120 (122)
157 cd04632 CBS_pair_19 The CBS do 99.4 1.8E-11 4E-16 88.4 12.8 121 50-196 2-126 (128)
158 cd04640 CBS_pair_27 The CBS do 99.4 7E-12 1.5E-16 90.5 10.5 117 50-197 2-125 (126)
159 KOG1764 5'-AMP-activated prote 99.4 2.1E-11 4.6E-16 103.2 14.6 171 2-203 181-362 (381)
160 cd04606 CBS_pair_Mg_transporte 99.4 6.2E-12 1.3E-16 88.3 9.5 99 54-197 2-107 (109)
161 cd04638 CBS_pair_25 The CBS do 99.4 1.5E-11 3.3E-16 85.7 11.4 98 154-259 3-101 (106)
162 cd04634 CBS_pair_21 The CBS do 99.4 2.3E-11 5.1E-16 89.8 12.9 138 49-196 1-141 (143)
163 cd04591 CBS_pair_EriC_assoc_eu 99.4 1.7E-11 3.7E-16 85.5 11.4 97 50-196 3-103 (105)
164 cd04584 CBS_pair_ACT_assoc Thi 99.3 2.7E-11 5.9E-16 86.5 12.0 117 50-196 2-119 (121)
165 cd04602 CBS_pair_IMPDH_2 This 99.3 2.5E-11 5.5E-16 85.9 11.6 103 50-196 3-112 (114)
166 TIGR01302 IMP_dehydrog inosine 99.3 1.5E-11 3.3E-16 107.0 12.5 115 42-199 81-200 (450)
167 COG0517 FOG: CBS domain [Gener 99.3 6E-11 1.3E-15 84.1 13.3 111 45-195 3-116 (117)
168 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 1.1E-11 2.4E-16 87.5 9.5 91 3-94 22-113 (114)
169 cd04601 CBS_pair_IMPDH This cd 99.3 2E-11 4.3E-16 85.6 10.2 104 49-196 2-108 (110)
170 TIGR00393 kpsF KpsF/GutQ famil 99.3 1.3E-11 2.9E-16 100.8 10.3 111 41-191 155-268 (268)
171 TIGR01137 cysta_beta cystathio 99.3 3E-11 6.4E-16 106.1 13.0 120 38-198 332-452 (454)
172 cd04638 CBS_pair_25 The CBS do 99.3 5.7E-11 1.2E-15 82.8 12.0 102 50-196 2-104 (106)
173 PRK11573 hypothetical protein; 99.3 2.8E-11 6E-16 104.1 12.2 118 139-258 184-303 (413)
174 cd04609 CBS_pair_PALP_assoc2 T 99.3 4.3E-11 9.2E-16 83.9 11.1 106 50-196 2-108 (110)
175 COG4536 CorB Putative Mg2+ and 99.3 6.5E-11 1.4E-15 96.7 12.8 162 34-235 193-361 (423)
176 cd04598 CBS_pair_GGDEF_assoc T 99.3 9.9E-11 2.1E-15 83.3 12.6 111 50-196 2-117 (119)
177 cd02205 CBS_pair The CBS domai 99.3 1.8E-10 3.9E-15 80.6 12.6 108 50-196 2-111 (113)
178 COG1253 TlyC Hemolysins and re 99.2 2.4E-10 5.1E-15 99.2 12.2 116 139-258 203-320 (429)
179 COG2239 MgtE Mg/Co/Ni transpor 99.1 3E-10 6.6E-15 97.5 9.6 111 139-258 129-245 (451)
180 COG2239 MgtE Mg/Co/Ni transpor 99.1 4.6E-10 1E-14 96.4 10.4 125 30-199 121-252 (451)
181 PF00571 CBS: CBS domain CBS d 99.1 7.4E-10 1.6E-14 68.1 6.6 54 43-96 1-55 (57)
182 cd04592 CBS_pair_EriC_assoc_eu 99.0 3.4E-09 7.4E-14 77.1 10.7 114 50-182 2-116 (133)
183 COG4536 CorB Putative Mg2+ and 99.0 7.3E-10 1.6E-14 90.6 7.8 117 140-258 198-316 (423)
184 KOG2550 IMP dehydrogenase/GMP 99.0 5.3E-10 1.1E-14 92.2 6.8 102 152-259 116-221 (503)
185 TIGR01186 proV glycine betaine 99.0 2.6E-08 5.6E-13 84.4 16.2 99 154-259 252-351 (363)
186 COG4535 CorC Putative Mg2+ and 99.0 1.1E-09 2.3E-14 84.2 6.6 158 36-236 62-228 (293)
187 PF00571 CBS: CBS domain CBS d 98.9 2.3E-09 4.9E-14 65.9 5.8 53 145-199 2-55 (57)
188 KOG0474 Cl- channel CLC-7 and 98.9 4.9E-09 1.1E-13 90.9 7.1 158 37-196 578-743 (762)
189 TIGR01186 proV glycine betaine 98.7 1E-06 2.2E-11 74.7 16.1 149 6-200 197-358 (363)
190 PRK10070 glycine betaine trans 98.7 1.2E-06 2.5E-11 75.3 16.3 151 7-203 233-396 (400)
191 PRK10070 glycine betaine trans 98.7 1.5E-07 3.2E-12 80.7 10.3 95 157-258 290-385 (400)
192 KOG0474 Cl- channel CLC-7 and 98.6 4.7E-08 1E-12 85.0 6.1 117 140-259 580-740 (762)
193 COG4535 CorC Putative Mg2+ and 98.6 6E-08 1.3E-12 74.7 5.3 115 140-258 65-181 (293)
194 cd04597 CBS_pair_DRTGG_assoc2 98.3 1.5E-06 3.2E-11 61.3 4.9 50 209-258 58-107 (113)
195 cd04597 CBS_pair_DRTGG_assoc2 98.3 2.1E-06 4.5E-11 60.5 5.5 54 41-94 58-112 (113)
196 KOG2550 IMP dehydrogenase/GMP 98.2 1.5E-05 3.2E-10 66.5 10.6 104 49-196 116-224 (503)
197 COG4175 ProV ABC-type proline/ 98.1 1.8E-05 3.9E-10 64.4 8.8 158 47-259 214-376 (386)
198 KOG0475 Cl- channel CLC-3 and 98.0 4.7E-05 1E-09 66.9 10.2 106 153-259 557-688 (696)
199 KOG0475 Cl- channel CLC-3 and 98.0 7E-05 1.5E-09 65.8 9.9 130 51-197 558-692 (696)
200 smart00116 CBS Domain in cysta 97.8 9.4E-05 2E-09 42.6 5.8 44 154-197 2-46 (49)
201 smart00116 CBS Domain in cysta 97.8 0.00012 2.6E-09 42.2 5.8 45 51-95 2-47 (49)
202 TIGR03415 ABC_choXWV_ATP choli 97.6 0.0017 3.8E-08 55.6 12.3 139 7-199 233-379 (382)
203 TIGR03415 ABC_choXWV_ATP choli 97.5 0.0021 4.6E-08 55.1 11.3 75 173-258 298-372 (382)
204 KOG0476 Cl- channel CLC-2 and 97.4 0.0031 6.8E-08 57.0 12.3 62 37-98 584-648 (931)
205 COG4175 ProV ABC-type proline/ 97.1 0.0025 5.4E-08 52.3 7.6 133 13-199 238-382 (386)
206 COG1125 OpuBA ABC-type proline 95.6 0.078 1.7E-06 42.5 7.5 83 176-258 204-302 (309)
207 COG1125 OpuBA ABC-type proline 94.6 0.27 5.8E-06 39.5 8.1 87 8-95 205-308 (309)
208 KOG2118 Predicted membrane pro 93.0 0.18 4E-06 44.8 5.1 107 139-247 201-311 (498)
209 COG1419 FlhF Flagellar GTP-bin 88.7 2.4 5.3E-05 36.5 7.5 143 16-185 233-376 (407)
210 KOG2118 Predicted membrane pro 87.3 0.76 1.6E-05 41.0 3.9 127 34-200 197-328 (498)
211 KOG0476 Cl- channel CLC-2 and 86.6 0.49 1.1E-05 43.5 2.4 52 208-259 587-640 (931)
212 PRK11388 DNA-binding transcrip 83.8 4.7 0.0001 37.4 7.4 91 163-257 61-162 (638)
213 PRK11388 DNA-binding transcrip 65.1 40 0.00086 31.4 8.3 79 7-88 73-162 (638)
214 PF05198 IF3_N: Translation in 62.1 21 0.00046 23.0 4.2 30 6-35 12-41 (76)
215 PF14827 Cache_3: Sensory doma 57.0 11 0.00023 26.3 2.4 17 241-257 92-108 (116)
216 PF13365 Trypsin_2: Trypsin-li 40.9 20 0.00043 24.5 1.8 20 236-255 101-120 (120)
217 CHL00199 infC translation init 40.1 44 0.00095 25.6 3.5 34 5-38 23-56 (182)
218 PF12282 H_kinase_N: Signal tr 39.2 22 0.00048 26.1 1.8 18 240-258 106-123 (145)
219 COG3284 AcoR Transcriptional a 38.6 71 0.0015 29.4 5.1 91 163-257 76-177 (606)
220 PF02743 Cache_1: Cache domain 38.5 33 0.00071 21.8 2.4 16 242-257 18-33 (81)
221 PF14044 NETI: NETI protein 37.8 47 0.001 19.9 2.7 21 221-241 3-23 (57)
222 COG0290 InfC Translation initi 37.2 70 0.0015 24.2 4.1 29 5-33 17-45 (176)
223 COG2216 KdpB High-affinity K+ 37.0 70 0.0015 28.9 4.7 40 59-98 414-453 (681)
224 COG1956 GAF domain-containing 32.8 51 0.0011 24.6 2.8 18 74-91 118-135 (163)
225 TIGR00168 infC translation ini 31.2 54 0.0012 24.7 2.8 33 5-37 6-38 (165)
226 smart00481 POLIIIAc DNA polyme 29.1 99 0.0022 18.7 3.4 38 158-195 12-49 (67)
227 PRK00028 infC translation init 29.1 69 0.0015 24.4 3.1 34 5-38 18-51 (177)
228 PF03948 Ribosomal_L9_C: Ribos 27.4 43 0.00093 22.1 1.5 25 14-38 24-49 (87)
229 COG2216 KdpB High-affinity K+ 26.4 1.1E+02 0.0025 27.7 4.2 40 162-201 414-453 (681)
230 PF11141 DUF2914: Protein of u 25.7 84 0.0018 19.5 2.6 19 239-257 44-62 (66)
231 COG3829 RocR Transcriptional r 25.1 2.5E+02 0.0054 25.7 6.2 123 76-257 84-214 (560)
232 COG3290 CitA Signal transducti 25.0 52 0.0011 29.7 2.0 81 161-257 73-157 (537)
233 PF08275 Toprim_N: DNA primase 24.6 68 0.0015 22.9 2.3 17 242-258 80-96 (128)
234 PF10049 DUF2283: Protein of u 24.6 55 0.0012 19.0 1.5 10 246-255 35-44 (50)
235 COG0241 HisB Histidinol phosph 23.7 1.1E+02 0.0023 23.5 3.2 38 159-196 32-70 (181)
236 PF13673 Acetyltransf_10: Acet 23.4 1.4E+02 0.003 20.0 3.7 29 228-257 32-60 (117)
237 COG5428 Uncharacterized conser 21.5 65 0.0014 20.2 1.4 17 239-255 29-45 (69)
238 PF13596 PAS_10: PAS domain; P 20.9 85 0.0019 20.9 2.1 16 241-256 84-99 (106)
239 PF00944 Peptidase_S3: Alphavi 20.9 1.2E+02 0.0026 22.0 2.8 19 5-23 106-124 (158)
240 TIGR02038 protease_degS peripl 20.7 97 0.0021 26.5 2.8 21 4-24 197-217 (351)
241 PHA00673 acetyltransferase dom 20.4 2E+02 0.0044 21.4 4.1 31 226-256 40-70 (154)
No 1
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.83 E-value=5.1e-20 Score=141.65 Aligned_cols=126 Identities=21% Similarity=0.345 Sum_probs=114.2
Q ss_pred hcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHH
Q 025005 34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113 (259)
Q Consensus 34 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~ 113 (259)
...++++.++.++|+++++++++++|+++|..+|.++++++.||+|+++++|+++..|+...+..
T Consensus 165 ~m~siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~--------------- 229 (294)
T COG2524 165 KMVSIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIAN--------------- 229 (294)
T ss_pred eeeecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHc---------------
Confidence 44578889999999999999999999999999999999999999998899999999999987432
Q ss_pred hhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeeh
Q 025005 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS 192 (259)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~ 192 (259)
-....+++++|. ++++++.+++.+.||+++|..+++.+++|+| +|+++|++|+
T Consensus 230 ------------------------g~~~~kV~~~M~--k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITr 283 (294)
T COG2524 230 ------------------------GNLDAKVSDYMR--KNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITR 283 (294)
T ss_pred ------------------------CCccccHHHHhc--cCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEeh
Confidence 123556899998 7899999999999999999999999999999 9999999999
Q ss_pred HHHHHHHH
Q 025005 193 KDILMRVI 200 (259)
Q Consensus 193 ~di~~~~~ 200 (259)
.|++..+.
T Consensus 284 TDIL~~ia 291 (294)
T COG2524 284 TDILTRIA 291 (294)
T ss_pred HHHHHHhh
Confidence 99996654
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.81 E-value=2.1e-19 Score=138.30 Aligned_cols=114 Identities=25% Similarity=0.339 Sum_probs=105.9
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCC
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (259)
.+.+++++|+ ++++++.+++|+.+++.+|.+++++.+||+|+++++|++|..|+. .+++++. ....++++|.+++
T Consensus 170 Pk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~-~aia~g~--~~~kV~~~M~k~v 244 (294)
T COG2524 170 PKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIA-KAIANGN--LDAKVSDYMRKNV 244 (294)
T ss_pred Ccchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHH-HHHHcCC--ccccHHHHhccCC
Confidence 4677889998 789999999999999999999999999999988999999999997 6666653 3588999999999
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.++++++.+++|++.|.++++.+|.|+|.+|+++|+|||
T Consensus 245 itI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITr 283 (294)
T COG2524 245 ITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITR 283 (294)
T ss_pred ceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEeh
Confidence 999999999999999999999999999999999999998
No 3
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.75 E-value=7.6e-17 Score=136.05 Aligned_cols=224 Identities=20% Similarity=0.216 Sum_probs=162.9
Q ss_pred CCCcCEEEEEcC-CCeEEEEEehhHHHHHHHHhcC------CCCc---------cccccc---ccCCC-eEEeCcchHHH
Q 025005 3 ARRVDALLLTDS-NALLCGILTDKDIATRVIAREL------NLEE---------TPVSKV---MTRNP-TFVLSDTLAVE 62 (259)
Q Consensus 3 ~~~~~~~~v~~~-~~~~~g~~t~~di~~~~~~~~~------~~~~---------~~v~~~---~~~~~-~~v~~~~~l~~ 62 (259)
..+.+++|+++. ..+++|+++..|+...+...-. ++.. .++..+ -..++ +.+.+..++.+
T Consensus 96 ~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~ 175 (381)
T KOG1764|consen 96 QNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLD 175 (381)
T ss_pred hhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHH
Confidence 467789999996 4679999999999865543111 1111 111111 12334 89999999999
Q ss_pred HHHHHHhCCccEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhc
Q 025005 63 ALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMF 140 (259)
Q Consensus 63 a~~~~~~~~~~~~pV~d--~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (259)
+...+.+++++++||.| .+.++++++...+++.+-....... ...+.
T Consensus 176 ~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~-------------------------------~~~~l 224 (381)
T KOG1764|consen 176 AVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP-------------------------------LPSLL 224 (381)
T ss_pred HHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc-------------------------------cHHHh
Confidence 99999999999999998 4899999999999987544322111 00011
Q ss_pred CCCccccc-CCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccc-cccccC-
Q 025005 141 RPSLSTII-PEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTL-VEKVMT- 216 (259)
Q Consensus 141 ~~~v~~~~-~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~-v~~~~~- 216 (259)
..++.++- -...++..+..++++.++++.|...+++.+||++ .|..+|+++..|+...+........... ++.+..
T Consensus 225 ~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~ 304 (381)
T KOG1764|consen 225 SKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSH 304 (381)
T ss_pred hCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhh
Confidence 22222211 0014588999999999999999999999999999 7777999999999744444433333333 333332
Q ss_pred -----CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEe
Q 025005 217 -----PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYS 257 (259)
Q Consensus 217 -----~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvit 257 (259)
...++|.++.+|.++++.|..+++++++|||++|.++|+||
T Consensus 305 ~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvS 350 (381)
T KOG1764|consen 305 RPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVIS 350 (381)
T ss_pred cccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEee
Confidence 24588999999999999999999999999999999999997
No 4
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.74 E-value=3.5e-17 Score=116.97 Aligned_cols=121 Identities=18% Similarity=0.274 Sum_probs=104.6
Q ss_pred CcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 025005 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (259)
Q Consensus 39 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (259)
...+...+|.++++++.+++++.+++++|.+++++.+||+++++++|-|+..++.+...+.+..
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~---------------- 126 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMES---------------- 126 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccc----------------
Confidence 4578899999999999999999999999999999999999999999999999999986654211
Q ss_pred cccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHH
Q 025005 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 198 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~ 198 (259)
....+++++|. ..+.+++++.++..+.+++..+ +++.|+++|+++|+||..|+++.
T Consensus 127 --------------------i~~~~vr~vM~--e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e~G~~vGIITk~DI~k~ 182 (187)
T COG3620 127 --------------------IRSLRVREVMG--EPFPTVSPDESLNVISQLLEEH--PAVLVVENGKVVGIITKADIMKL 182 (187)
T ss_pred --------------------hhhhhHHHHhc--CCCCcCCCCCCHHHHHHHHhhC--CeEEEEeCCceEEEEeHHHHHHH
Confidence 23445788886 7899999999999999888766 56888899999999999999844
Q ss_pred H
Q 025005 199 V 199 (259)
Q Consensus 199 ~ 199 (259)
+
T Consensus 183 ~ 183 (187)
T COG3620 183 L 183 (187)
T ss_pred H
Confidence 3
No 5
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.73 E-value=3.9e-17 Score=145.92 Aligned_cols=210 Identities=18% Similarity=0.197 Sum_probs=144.1
Q ss_pred ccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 025005 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 119 (259)
Q Consensus 41 ~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (259)
.+++++|.++++++++++++.+|+++|.+++++.+||+| +|+++|+++..++...+....... ...........+.+
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i~~ 145 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENIIR 145 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHHHH
Confidence 689999999999999999999999999999999999999 699999999999998766543210 00000111111122
Q ss_pred ccCCCCCChhhHHHH-HHHh-hc---CCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCC----------
Q 025005 120 HWGTSISGPNTFIET-LRER-MF---RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN---------- 184 (259)
Q Consensus 120 ~~~~~~~~~~~~~~~-~~~~-~~---~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g---------- 184 (259)
.++..+......... .... .. ...+.+.+.+ .+++++..+..+.. .+.+.+.++++|+.+.
T Consensus 146 ~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~-~~lvi~gdr~d~~~---~ai~~~~~~lIlt~g~~~~~~v~~la 221 (546)
T PRK14869 146 TLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEE-GDIVIVGDREDIQL---AAIEAGVRLLIITGGAPVSEDVLELA 221 (546)
T ss_pred hcCcEEEecCcccccccccEEEEEcCHHHHHHhccC-CCEEEEcCcHHHHH---HHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 222211111000000 0000 00 0112223432 45666665555533 4578889999888732
Q ss_pred ---eeeEEeehHHHHHHHHhcCCCCcccccccccC-CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 185 ---KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 185 ---~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
.+.++.|..|.+..+..-. ...+++++|+ +++.++++++++.++.+.|.+++.+.+||||++|+++|+||++
T Consensus 222 ~~~~i~ii~t~~dt~~t~~~l~---~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~ 297 (546)
T PRK14869 222 KENGVTVISTPYDTFTTARLIN---QSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRY 297 (546)
T ss_pred HhCCCeEEEecccHHHHHHHhh---cCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHH
Confidence 3778999999875443322 2578999999 8999999999999999999999999999999999999999973
No 6
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.71 E-value=3e-16 Score=111.39 Aligned_cols=106 Identities=24% Similarity=0.289 Sum_probs=92.9
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
+.++.+++++.++++.|.+.+...+||++ +|++.|+++..|+++............+++++|.+++.++.+++++.+|+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 82 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVW 82 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHH
Confidence 67889999999999999999999999998 89999999999997544331223335678999998999999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.|.+++...+||+|++|+++|+|+++
T Consensus 83 ~~m~~~~~~~lpVvd~~~~~~Gvi~~~ 109 (114)
T cd04619 83 QVMKQRGLKNIPVVDENARPLGVLNAR 109 (114)
T ss_pred HHHHHcCCCeEEEECCCCcEEEEEEhH
Confidence 999999999999999889999999974
No 7
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=8.4e-16 Score=109.04 Aligned_cols=106 Identities=30% Similarity=0.302 Sum_probs=93.0
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (259)
++.++.++.++.++++.|.+.+++.+||++ + |+++|+++..|+++.+..........++.++|..++.++++++++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY 81 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence 477899999999999999989999999999 6 89999999999986555543333346788999888999999999999
Q ss_pred HHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 231 ALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++.|.+.+...+||+|+ |+++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~ 109 (114)
T cd04630 82 CARLMERTNIRRAPVVEN-NELIGIISLT 109 (114)
T ss_pred HHHHHHHcCCCEeeEeeC-CEEEEEEEHH
Confidence 999999999999999997 9999999973
No 8
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.68 E-value=4.4e-16 Score=122.37 Aligned_cols=132 Identities=20% Similarity=0.322 Sum_probs=112.3
Q ss_pred CCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 025005 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (259)
Q Consensus 37 ~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 115 (259)
...+++-.++|+++++++.+++++.+|.++|.++++..+||+| +.+++|++++.|++...-.
T Consensus 241 ~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~----------------- 303 (382)
T COG3448 241 RMGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARP----------------- 303 (382)
T ss_pred HhccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCc-----------------
Confidence 4557889999999999999999999999999999999999999 5899999999999874111
Q ss_pred hcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHH
Q 025005 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD 194 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~d 194 (259)
.+...+. .+...+++.+|+ .++.++.++++..+++-.+.+.+.+++||+| +|+++|++|+.|
T Consensus 304 --------------~p~qrlr-~~~~~~vk~imt--~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtD 366 (382)
T COG3448 304 --------------SPFQRLR-FLRPPTVKGIMT--TPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTD 366 (382)
T ss_pred --------------chHHHhh-ccCCCccccccc--CcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHH
Confidence 0111111 245677899998 7899999999999999999999999999999 999999999999
Q ss_pred HHHHHHhc
Q 025005 195 ILMRVISQ 202 (259)
Q Consensus 195 i~~~~~~~ 202 (259)
++-.++.+
T Consensus 367 liaal~r~ 374 (382)
T COG3448 367 LIAALYRN 374 (382)
T ss_pred HHHHHHHH
Confidence 99666544
No 9
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.68 E-value=1.1e-15 Score=109.45 Aligned_cols=107 Identities=13% Similarity=0.104 Sum_probs=87.2
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccc------cccCCCCceecCC
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE------KVMTPNPECATID 225 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~------~~~~~~~~~v~~~ 225 (259)
++.+++++.++.++.+.|.+.+.+.+||++ +|+++|+++.+|++..+..........++. ++|..++.+++++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD 81 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence 578899999999999999999999999998 899999999999974332222111111222 2334567899999
Q ss_pred CCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 226 TPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 226 ~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++.++++.|.+++.+.+||+|++|+++|+||++
T Consensus 82 ~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~ 115 (120)
T cd04641 82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISLS 115 (120)
T ss_pred CcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHH
Confidence 9999999999999999999999889999999974
No 10
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.67 E-value=2.4e-15 Score=123.31 Aligned_cols=173 Identities=13% Similarity=0.145 Sum_probs=131.6
Q ss_pred EEEehhHHHHHHHHhcCCCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHHHHHH
Q 025005 20 GILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYD 95 (259)
Q Consensus 20 g~~t~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~i~~~ 95 (259)
|.++..+ +.++.+-.++.+.+|.++|++ ++++++.+.++.++++.+.+++++++||++ + ++++|+++..|++..
T Consensus 48 g~l~~~e--~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~ 125 (292)
T PRK15094 48 DLIDEDT--RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 125 (292)
T ss_pred CCCCHHH--HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhH
Confidence 4555444 244455668889999999987 699999999999999999999999999998 4 789999999999853
Q ss_pred HHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCC
Q 025005 96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL 175 (259)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~ 175 (259)
.... ....++.++|. ++.++++++++.++++.|.+.+.
T Consensus 126 ~~~~---------------------------------------~~~~~l~~l~r---~~~~V~e~~~l~~~L~~m~~~~~ 163 (292)
T PRK15094 126 MRSD---------------------------------------AEAFSMDKVLR---QAVVVPESKRVDRMLKEFRSQRY 163 (292)
T ss_pred hhcc---------------------------------------CCcCCHHHHcC---CCcCcCCCCcHHHHHHHHHhcCC
Confidence 1100 00112445564 35689999999999999999999
Q ss_pred ceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccc-ccc--CCCCceecCCCCHHHHHHHHH
Q 025005 176 SSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE-KVM--TPNPECATIDTPIVDALHIMH 236 (259)
Q Consensus 176 ~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~-~~~--~~~~~~v~~~~~l~~a~~~~~ 236 (259)
+.+||+| .|.++|+||..|+++.+...-.+....... .+. ....+.++..+++.+..+.+-
T Consensus 164 ~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 164 HMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFG 228 (292)
T ss_pred EEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHhC
Confidence 9999999 789999999999998887653332221111 121 234578999999999998874
No 11
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.67 E-value=8.8e-16 Score=105.95 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=80.4
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (259)
.+.++++++++.++.+.|.+.+.+++||++ + |+++|++|..|+.+.+. +.++.+++++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------~~~v~~~~~l~~ 63 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------LVSIHPERSLFD 63 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------eEEeCCCCcHHH
Confidence 378999999999999999999999999998 4 79999999999963211 678999999999
Q ss_pred HHHHHHhCCCceeeeecCC-CceeeEEecC
Q 025005 231 ALHIMHDGKFLHLPVVDRG-DMPITCYSKK 259 (259)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~-~~~~Gvitr~ 259 (259)
|+++|.+++.+++||+|++ |+++|+||++
T Consensus 64 a~~~m~~~~~~~lpVvd~~~~~~~giit~~ 93 (98)
T cd04618 64 AALLLLKNKIHRLPVIDPSTGTGLYILTSR 93 (98)
T ss_pred HHHHHHHCCCCEeeEEECCCCCceEEeehh
Confidence 9999999999999999987 9999999974
No 12
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.66 E-value=1.6e-15 Score=107.08 Aligned_cols=103 Identities=22% Similarity=0.208 Sum_probs=89.9
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
+.++.++.++.++.+.|.+.+.+.++|++ +|+++|+++..|+.+ ... ..+...++.++|..++.++.+++++.+|+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~-~~~--~~~~~~~v~~~~~~~~~~v~~~~~l~~al 79 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLE-IGP--NDYETLKVCEVYIVPVPIVYCDSKVTDLL 79 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHh-hcc--ccccccChhheeecCCcEECCCCcHHHHH
Confidence 67899999999999999988889999999 789999999999963 321 12223568899988889999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++|.+++.+.+||+|++|+++|+||++
T Consensus 80 ~~m~~~~~~~lpVvd~~~~~~Giit~~ 106 (111)
T cd04603 80 RIFRETEPPVVAVVDKEGKLVGTIYER 106 (111)
T ss_pred HHHHHcCCCeEEEEcCCCeEEEEEEhH
Confidence 999999999999999889999999974
No 13
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=2.4e-15 Score=107.38 Aligned_cols=106 Identities=21% Similarity=0.221 Sum_probs=91.2
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCC--CCceecCCCCHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIV 229 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~ 229 (259)
++.+++++.++.++++.|..++..++||++ +|+++|+++..|+.+..... ......+++++|.+ ++.++++++++.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG-ADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-CCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 467899999999999999989999999999 79999999999998655432 22334667788874 678999999999
Q ss_pred HHHHHHHhCCCceeeeecCC---CceeeEEecC
Q 025005 230 DALHIMHDGKFLHLPVVDRG---DMPITCYSKK 259 (259)
Q Consensus 230 ~a~~~~~~~~~~~l~Vvd~~---~~~~Gvitr~ 259 (259)
+++++|.+++.+.+||||++ |+++|+||++
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~ 113 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKT 113 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhh
Confidence 99999999999999999976 7999999974
No 14
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.65 E-value=9.4e-16 Score=109.75 Aligned_cols=112 Identities=22% Similarity=0.233 Sum_probs=100.4
Q ss_pred CCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCce
Q 025005 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC 221 (259)
Q Consensus 142 ~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~ 221 (259)
.+.+.+|. .+++.+.+++++.++.++|.+++++.+||+++|+++|-||..++.+.+++...+..+..++++|....++
T Consensus 65 ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~ 142 (187)
T COG3620 65 ITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPT 142 (187)
T ss_pred EeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCc
Confidence 34577887 7899999999999999999999999999999999999999999997777765666778999999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 222 ATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++++++..+..++..++ ++.|+ ++|+++|+|||
T Consensus 143 Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk 176 (187)
T COG3620 143 VSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITK 176 (187)
T ss_pred CCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeH
Confidence 999999999999998876 47777 59999999997
No 15
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.65 E-value=6.1e-16 Score=134.58 Aligned_cols=174 Identities=18% Similarity=0.187 Sum_probs=137.4
Q ss_pred EEEEehhHHHHHHHHhcCCCCcccccccccCCCeEEeCcchHHHHHHHHHh-----CCccEeeEee-CCeEEEEEeHHHH
Q 025005 19 CGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQ-----GKFRHLPVVE-NGEVIALLDIAKC 92 (259)
Q Consensus 19 ~g~~t~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~-----~~~~~~pV~d-~~~~vGvi~~~~i 92 (259)
.+.++..+ +..+..-..+.+.+++++|++++++++++.++.++++.|.+ ++...+||+| +++++|+++..++
T Consensus 111 L~~l~~~e--r~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dL 188 (449)
T TIGR00400 111 LASSTEEE--RKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDL 188 (449)
T ss_pred HHcCCHHH--HHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHH
Confidence 34445544 23334455888999999999999999999999999999975 4456788887 6899999999998
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHH
Q 025005 93 LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE 172 (259)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~ 172 (259)
+.. ....+++++|. +++.++++++++.++++.|.+
T Consensus 189 l~a-------------------------------------------~~~~~v~~im~--~~~~~v~~~~~~~eal~~m~~ 223 (449)
T TIGR00400 189 ILA-------------------------------------------KPEEILSSIMR--SSVFSIVGVNDQEEVARLIQK 223 (449)
T ss_pred hcC-------------------------------------------CCCCcHHHHhC--CCCeeECCCCCHHHHHHHHHH
Confidence 642 11234677776 668889999999999999999
Q ss_pred cCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeee
Q 025005 173 LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVV 246 (259)
Q Consensus 173 ~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv 246 (259)
++...+||+| +|+++|++|.+|+++.+.... .+++|.....+..+++.+.++...+.+++..-++|.
T Consensus 224 ~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~-------~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~ 291 (449)
T TIGR00400 224 YDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA-------TEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL 291 (449)
T ss_pred cCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-------HHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH
Confidence 9999999999 899999999999985554432 256666555555567888999999999998887764
No 16
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.64 E-value=6.5e-15 Score=104.12 Aligned_cols=107 Identities=53% Similarity=0.745 Sum_probs=92.8
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
++.++.++.++.++.+.|.+.+.+.+||+++|+++|+++..|++..+...+......++.++|.+++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL 81 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence 46788999999999999988888899999989999999999997555554433222678899988889999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.|..++...+||++++|+++|+||++
T Consensus 82 ~~~~~~~~~~l~Vv~~~~~~~Gvvs~~ 108 (113)
T cd04587 82 HLMVQGKFRHLPVVDKSGQVVGLLDVT 108 (113)
T ss_pred HHHHHcCCCcccEECCCCCEEEEEEHH
Confidence 999999999999999889999999963
No 17
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.64 E-value=1.2e-14 Score=124.72 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=129.4
Q ss_pred HHHHhcCCCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHhh
Q 025005 30 RVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAE 105 (259)
Q Consensus 30 ~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~--~~~vGvi~~~~i~~~~~~~~~~~~~ 105 (259)
.++.+-.++.+.+++++|++ ++++++.++++.++++.+.+++++++||+++ ++++|+++..|++.....
T Consensus 180 ~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~------- 252 (408)
T TIGR03520 180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK------- 252 (408)
T ss_pred HHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------
Confidence 34445568889999999986 7899999999999999999999999999984 699999999999853110
Q ss_pred hhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CC
Q 025005 106 KGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN 184 (259)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g 184 (259)
...++.++| +++.++++++++.++++.|.+.+.+.++|+| .|
T Consensus 253 ----------------------------------~~~~l~~~~---~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G 295 (408)
T TIGR03520 253 ----------------------------------KNFDWQSLL---REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG 295 (408)
T ss_pred ----------------------------------CCCCHHHHc---CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC
Confidence 011234455 4588999999999999999999999999999 79
Q ss_pred eeeEEeehHHHHHHHHhcCCCCccccccccc---CCCCceecCCCCHHHHHHHHHh
Q 025005 185 KPRGILTSKDILMRVISQNLPADSTLVEKVM---TPNPECATIDTPIVDALHIMHD 237 (259)
Q Consensus 185 ~~~Giit~~di~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~l~~a~~~~~~ 237 (259)
...|+||..|+++.+.+.-.+... +-.+.+ ..+.+.++..+++.+..+.|.-
T Consensus 296 ~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 296 GTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred CEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCCeEEEEeccCHHHHHHHhCC
Confidence 999999999999888765433221 112222 2356889999999999999854
No 18
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.64 E-value=2.3e-15 Score=126.32 Aligned_cols=118 Identities=23% Similarity=0.274 Sum_probs=101.8
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCC
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~ 218 (259)
...+++++|.+.+++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|+. ++...+..+...+++++|.++
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~-~~~~~~~~~~~~~v~~im~~~ 278 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLR-RVFDMGIDLRQASIADVMTPG 278 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHH-HHHhcCCCcccCCHHHhcCCC
Confidence 4556889997323899999999999999999988888888888 89999999999996 455544344457899999999
Q ss_pred CceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.++.+++++.+|++.|.+++.+++||+| +|+++|+||+.
T Consensus 279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~ 318 (326)
T PRK10892 279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMH 318 (326)
T ss_pred CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhH
Confidence 99999999999999999999999999998 68999999974
No 19
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=5.2e-15 Score=106.44 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=87.8
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCC--------cccccccccCCCCcee
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA--------DSTLVEKVMTPNPECA 222 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~--------~~~~v~~~~~~~~~~v 222 (259)
++.++.++.++.++++.|.+.+++++||++ + |+++|+++..|+++.+....... ......+.|..++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 467899999999999999988899999999 6 89999999999985443321110 0012234677788999
Q ss_pred cCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 223 TIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++++++.+|++.|.+++.+.+||+|++|+++|+||++
T Consensus 82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~ 118 (123)
T cd04627 82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVT 118 (123)
T ss_pred CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHH
Confidence 9999999999999999999999999889999999974
No 20
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.63 E-value=1e-14 Score=103.15 Aligned_cols=107 Identities=31% Similarity=0.402 Sum_probs=93.1
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
++.++.++.++.++.+.|.+.+.+++||+++|+++|+++..|++......+......++.++|...+.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 81 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence 47789999999999999999899999999999999999999987445444443333458899988999999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.|.+.+.+++||+|++|+++|+|+++
T Consensus 82 ~~~~~~~~~~~~V~~~~~~~~G~it~~ 108 (113)
T cd04622 82 RLMREHQVRRLPVVDDDGRLVGIVSLG 108 (113)
T ss_pred HHHHHcCCCeeeEECCCCcEEEEEEHH
Confidence 999999999999999889999999973
No 21
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.63 E-value=2.7e-15 Score=118.03 Aligned_cols=118 Identities=25% Similarity=0.269 Sum_probs=103.1
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHh----cCCCCccccccc
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS----QNLPADSTLVEK 213 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~----~~~~~~~~~v~~ 213 (259)
....+-+++|+ +++++++.++++.++.+++.+++++.+||+| +.+++|++|++|+++..-- .-.......++.
T Consensus 242 ~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~ 319 (382)
T COG3448 242 MGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKG 319 (382)
T ss_pred hccccHHHhcC--ccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccc
Confidence 44556689998 7899999999999999999999999999999 8899999999999852211 111123578899
Q ss_pred ccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 214 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+|++...++.++++..+.+-.|.+.+.+++||+|+.|+++||||.
T Consensus 320 imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQ 364 (382)
T COG3448 320 IMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQ 364 (382)
T ss_pred cccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeH
Confidence 999999999999999999999999999999999999999999985
No 22
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.63 E-value=8.5e-15 Score=103.97 Aligned_cols=106 Identities=26% Similarity=0.376 Sum_probs=91.2
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
++.++.++.++.++.+.|.+.+.+.+||++ +|+++|+++..|+.+.+ .........++.++|..++.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~ 80 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRAL-EADEAGEPSAVDEVATPPLLTVHPDEPLAHA 80 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHH-hcccccccccHHHhccCCceEECCCCCHHHH
Confidence 466889999999999999999999999999 79999999999997433 3333223345788888889999999999999
Q ss_pred HHHHHhCCCceeeeecCC--CceeeEEecC
Q 025005 232 LHIMHDGKFLHLPVVDRG--DMPITCYSKK 259 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~--~~~~Gvitr~ 259 (259)
++.|.+++...+||+|++ |+++|+||++
T Consensus 81 l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~ 110 (115)
T cd04593 81 LDRMASRGLRQLPVVDRGNPGQVLGLLTRE 110 (115)
T ss_pred HHHHHHcCCceeeEEeCCCCCeEEEEEEhH
Confidence 999999999999999977 8999999974
No 23
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.63 E-value=8.8e-15 Score=103.34 Aligned_cols=106 Identities=32% Similarity=0.413 Sum_probs=91.9
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
++..+.++.++.++.+.|.+.+++.+||++ +|+++|+++..|+++.+..........++.++|.+++.++++++++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEA 81 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHH
Confidence 467889999999999999989999999998 7999999999999855544333333457889998888999999999999
Q ss_pred HHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 232 LHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.|.+.+.+.+||+++ |+++|+||++
T Consensus 82 l~~~~~~~~~~~~Vv~~-~~~~Gvit~~ 108 (113)
T cd04623 82 MALMTERRFRHLPVVDG-GKLVGIVSIG 108 (113)
T ss_pred HHHHHHcCCCEeEEEeC-CEEEEEEEHH
Confidence 99999999999999996 9999999863
No 24
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.62 E-value=1.9e-14 Score=101.61 Aligned_cols=106 Identities=27% Similarity=0.400 Sum_probs=91.4
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
++.+++++.++.++++.|.+.+.+.+||+++++++|+++..|+++.+..........++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 81 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA 81 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence 46788999999999999998889999999967999999999998655544322334678899988889999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.|.+++.+.+||+|++ +++|+|+++
T Consensus 82 ~~~~~~~~~~~~Vv~~~-~~~Gvi~~~ 107 (112)
T cd04802 82 KLMAKHGIKRLPVVDDD-ELVGIVTTT 107 (112)
T ss_pred HHHHHcCCCeeEEeeCC-EEEEEEEhh
Confidence 99999999999999965 999999974
No 25
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.61 E-value=1.4e-14 Score=102.49 Aligned_cols=104 Identities=23% Similarity=0.337 Sum_probs=90.8
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
+.++.++.++.++++.|.+.+.+.++|++ +|+++|+++..|+++.+. ..... ..++.++|...+.++++++++.+++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~-~~~~~-~~~v~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALL-KGLSL-DDPVSEVMNRNPITAKVGSSREEIL 81 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHh-cCCCc-CCCHHHhhcCCCEEEcCCCCHHHHH
Confidence 66789999999999999988888999998 899999999999974443 33222 3578899988889999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.|.+++.+.+||+|++|+++|+||++
T Consensus 82 ~~~~~~~~~~~~Vv~~~~~~~Gvit~~ 108 (113)
T cd04607 82 ALMRERSIRHLPILDEEGRVVGLATLD 108 (113)
T ss_pred HHHHHCCCCEEEEECCCCCEEEEEEhH
Confidence 999999999999999889999999974
No 26
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.61 E-value=1.6e-14 Score=101.92 Aligned_cols=106 Identities=26% Similarity=0.356 Sum_probs=89.9
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
.+.++.++.++.++.+.|.+.+...++|.++|+++|+++..|+++.+......+...++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 81 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR 81 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence 36789999999999999988888778777799999999999997555432222234578899988889999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++|.+++...+||+| +|+++|+||++
T Consensus 82 ~~m~~~~~~~l~Vv~-~~~~~Gvvt~~ 107 (112)
T cd04625 82 RLMVERHLRYLPVLD-GGTLLGVISFH 107 (112)
T ss_pred HHHHHcCCCeeeEEE-CCEEEEEEEHH
Confidence 999999999999999 69999999973
No 27
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=1.2e-14 Score=103.10 Aligned_cols=106 Identities=23% Similarity=0.268 Sum_probs=88.5
Q ss_pred CeeEeCCCchHHHHHHHHHHcC-CceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCC--CCHH
Q 025005 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATID--TPIV 229 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~--~~l~ 229 (259)
++.+++++.++.++++.|...+ ...++|+++|+++|+++..|+++ ...........++.++|.+++.+++++ +++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~-~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~ 80 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVR-LTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF 80 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHH-HHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence 3667899999999999998877 66778878899999999999974 443333222357888998888888887 7899
Q ss_pred HHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 230 DALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 230 ~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++++.|.+++...+||+|++|+++|+||++
T Consensus 81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~ 110 (115)
T cd04620 81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAE 110 (115)
T ss_pred HHHHHHHHhCCceEEEEcCCCCEEEEEEhH
Confidence 999999999999999999889999999974
No 28
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.61 E-value=8.3e-15 Score=127.15 Aligned_cols=129 Identities=22% Similarity=0.246 Sum_probs=109.3
Q ss_pred CCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHH
Q 025005 122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 200 (259)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~ 200 (259)
|..+.+.+-..+...+.+...++.++|. +++.+++++.++.+++++|.+.+++.+||+| +|+++|++|.+|+. ..
T Consensus 69 GiGvih~nl~~~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~-~~- 144 (479)
T PRK07807 69 GLVVLPQDIPIDVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCA-GV- 144 (479)
T ss_pred CceEeeCCCCHHHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHh-cC-
Confidence 3444444444455566667777888887 7899999999999999999999999999999 89999999999984 21
Q ss_pred hcCCCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 201 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 201 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
.. ..+++++|.+++.++++++++.+|++.|.+++.+.+||+|++|+++|+||++
T Consensus 145 ----~~-~~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~ 198 (479)
T PRK07807 145 ----DR-FTQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRT 198 (479)
T ss_pred ----cc-CCCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHH
Confidence 11 2579999999999999999999999999999999999999889999999973
No 29
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.61 E-value=1.1e-14 Score=104.71 Aligned_cols=108 Identities=24% Similarity=0.369 Sum_probs=92.6
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCC---------CCcccccccccCCCCce
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPEC 221 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~---------~~~~~~v~~~~~~~~~~ 221 (259)
+++.+++++.++.++.+.|.+.+++++||++ +|+++|+++..|++..+..... .....++.++|.+++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVT 81 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCee
Confidence 5688899999999999999999999999998 7999999999999743332211 01234688899889999
Q ss_pred ecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 222 ATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++++++.++++.|.+.+.+.+||+|++|+++|+||++
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~ 119 (124)
T cd04600 82 VRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQT 119 (124)
T ss_pred eCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhH
Confidence 99999999999999999999999999999999999974
No 30
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.61 E-value=1.2e-14 Score=126.15 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=111.7
Q ss_pred ccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHH
Q 025005 120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV 199 (259)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~ 199 (259)
..|..+.+.+-..+...+.+...++.++|. +++.++.++.++.+++++|.+.+.+.+||+++++++|++|.+|+. .
T Consensus 66 ~GGigvIh~n~~i~~qae~v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~-~- 141 (475)
T TIGR01303 66 RGGIVILPQDLPIPAVKQTVAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLL-G- 141 (475)
T ss_pred CCCEEEEeCCCCHHHHHHHHhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhh-c-
Confidence 446666666655666666677778888887 678999999999999999999999999999988999999999984 1
Q ss_pred HhcCCCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 200 ISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 200 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
.. ...+++++|.+++.++++++++.+|+++|.+++.+.+||||++|+++|+||++
T Consensus 142 ----~~-~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~ 196 (475)
T TIGR01303 142 ----VD-RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRT 196 (475)
T ss_pred ----CC-CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence 12 23679999999999999999999999999999999999999899999999973
No 31
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.60 E-value=6.7e-15 Score=123.31 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=100.4
Q ss_pred CCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCC
Q 025005 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (259)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (259)
..+++++|.+.+++.+++++.++.++.+.|...+...+||+| +|+++|+++..|+.+ ++..+.. ...+++++|.+++
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~-~~~~~~~-~~~~v~~im~~~~ 273 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRR-WLVGGGA-LTTPVNEAMTRGG 273 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHH-HHhCCCC-cCCcHHHhcCCCC
Confidence 456888897322399999999999999999888888999999 899999999999964 4333222 2356899999999
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
.++.+++++.+|++.|.+++...+||||++|+++|+||++
T Consensus 274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~ 313 (321)
T PRK11543 274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQ 313 (321)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence 9999999999999999999999999999889999999974
No 32
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.60 E-value=3.1e-14 Score=100.23 Aligned_cols=105 Identities=30% Similarity=0.390 Sum_probs=91.4
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
++.++.++.++.++.+.|.+.+...+||+++|+++|+++..|+++.. ..... ...+++++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~l 79 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLL-ASGPD-LQTPVGEVMSSPLLTVPADTSLYDAR 79 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHH-hcCCC-CCcCHHHhcCCCceEECCCCCHHHHH
Confidence 46789999999999999998888899999989999999999997433 33322 34678899988899999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.|.+.+.+.+||+|++|+++|+|+++
T Consensus 80 ~~~~~~~~~~~~Vv~~~~~~~Gvi~~~ 106 (111)
T cd04611 80 QLMREHGIRHLVVVDDDGELLGLLSQT 106 (111)
T ss_pred HHHHHcCCeEEEEECCCCcEEEEEEhH
Confidence 999999999999999889999999973
No 33
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.60 E-value=6.2e-15 Score=106.28 Aligned_cols=107 Identities=19% Similarity=0.136 Sum_probs=92.0
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHH
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (259)
+++.++.++.++.++++.|.+.+.+.+||++ +|+++|+++..|+++.+.+.... ...+++++|.+++.++.+++++.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~-~~~~v~~im~~~~~~v~~~~~~~~ 80 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQ-PSDPVSKALYKQFKRVNKNDTLGK 80 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccC-CCCcHHHHhhccceecCCCCCHHH
Confidence 4588899999999999999999999999999 79999999999998655554333 347999999999999999999999
Q ss_pred HHHHHH---------hCCCceeeeecCCCceeeEEecC
Q 025005 231 ALHIMH---------DGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 231 a~~~~~---------~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.+++. +.+.+.+||+|++|+++|+||++
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~ 118 (124)
T cd04608 81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKI 118 (124)
T ss_pred HHhhcccCCceEEEeccccccccccccccceEEEEehh
Confidence 999653 33678889999889999999984
No 34
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.60 E-value=1.5e-14 Score=102.27 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=91.2
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
+..+.++.++.++++.|.+.+.+.+||++ +|+++|+++.+|+.+.+.... .+...++.++|..++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 81 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESE-ELKDAKVREVMNSPVITIDANDSIAKAR 81 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhh-hhcCCcHHHhccCCceEECCCCcHHHHH
Confidence 67789999999999999999999999999 789999999999975444432 2234678889988899999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEec
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+.|.+++...+||+|++|+++|++++
T Consensus 82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~ 107 (113)
T cd04615 82 WLMSNNNISRLPVLDDKGKVGGIVTE 107 (113)
T ss_pred HHHHHcCCCeeeEECCCCeEEEEEEH
Confidence 99999999999999988999999996
No 35
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.60 E-value=3.1e-14 Score=100.12 Aligned_cols=104 Identities=25% Similarity=0.321 Sum_probs=91.0
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
++.++.++.++.++.+.|.+.+++.+||+++|+++|+++..|+++ ....+.. ..++.++|..++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~-~~~~~~~--~~~v~~~~~~~~~~v~~~~~~~~~~ 78 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAH-AIARGLE--LAKVKDVMTKDVITIDEDEQLYDAI 78 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHH-HHhcccc--ccCHHHHhcCCceEECCCCCHHHHH
Confidence 477899999999999999999999999999899999999999974 4443322 2578888888889999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.|.+.+.+.+||+|++|+++|+|+++
T Consensus 79 ~~~~~~~~~~~~V~~~~~~~~G~i~~~ 105 (110)
T cd04588 79 RLMNKHNVGRLIVTDDEGRPVGIITRT 105 (110)
T ss_pred HHHHhcCCCEEEEECCCCCEEEEEEhH
Confidence 999999999999999889999999974
No 36
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.60 E-value=2.2e-14 Score=98.92 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=82.8
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
++++++++.++.+|.+.|.+++++++||+| + |+++|+++..|+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~-------------------------------- 49 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI-------------------------------- 49 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence 568899999999999999999999999998 4 799999999998753
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDIL 196 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~ 196 (259)
-.+.++.+++++.++++.|.+++.+++||++ + |+++|++|.+|++
T Consensus 50 ------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~ 96 (98)
T cd04618 50 ------------------------LRLVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRIL 96 (98)
T ss_pred ------------------------eeeEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhh
Confidence 1167899999999999999999999999999 6 8999999999986
No 37
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.9e-14 Score=101.46 Aligned_cols=104 Identities=21% Similarity=0.244 Sum_probs=90.6
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
++.++.++.++.++.+.|.+.+...+||++ +|+++|+++..++.+.+.. .. ...++.++|..++.++++++++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~-~~--~~~~v~~~~~~~~~~i~~~~~~~~~ 78 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAE-GG--PDAPVRGVMRRDFPTVSPSATLDAV 78 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHh-cC--CCCcHHHHhcCCCcEECCCCcHHHH
Confidence 467889999999999999888889999999 6999999999999744433 22 2357888998889999999999999
Q ss_pred HHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 232 LHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.|.+++...+||+|++|+++|++|++
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~ 106 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLE 106 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHH
Confidence 9999999999999999889999999974
No 38
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.60 E-value=1.8e-14 Score=101.87 Aligned_cols=106 Identities=22% Similarity=0.256 Sum_probs=92.7
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
++.++.++.++.++.+.|.+.++..+||++ +|+++|+++..|+. .+..+.......++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~ 80 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIR-EILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA 80 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHH-HHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence 477899999999999999988999999999 78999999999997 4444433333367889999999999999999999
Q ss_pred HHHHHhCCCceeeeecC-CCceeeEEecC
Q 025005 232 LHIMHDGKFLHLPVVDR-GDMPITCYSKK 259 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~-~~~~~Gvitr~ 259 (259)
++.|.+.+.+.+||+|+ +|+++|+++++
T Consensus 81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~ 109 (114)
T cd04613 81 LKKFEDSDYEQLPVVDDDPGKLLGILSRS 109 (114)
T ss_pred HHHHhhCCccEeeEEeCCCCEEEEEEEhH
Confidence 99999999999999997 79999999863
No 39
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.7e-14 Score=103.88 Aligned_cols=106 Identities=29% Similarity=0.326 Sum_probs=90.9
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCC-----------cccccccccCCCC
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPA-----------DSTLVEKVMTPNP 219 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~-----------~~~~v~~~~~~~~ 219 (259)
++.++.++.++.+++++|.+.+...+||++ + |+++|+++..|+++ ++...... ...++.+++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILK-YLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV 80 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHH-HhhccchhccccccccchhhhcCHHHHhcCCc
Confidence 477889999999999999999988999999 5 99999999999974 43332211 1357888888889
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
.++++++++.++++.|.+.+.+.+||+|++|+++|+||++
T Consensus 81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~ 120 (125)
T cd04631 81 ITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTER 120 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHH
Confidence 9999999999999999999999999999889999999973
No 40
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.5e-14 Score=102.66 Aligned_cols=105 Identities=25% Similarity=0.251 Sum_probs=88.6
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCc----ccccccccCCCCceecCCCC
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD----STLVEKVMTPNPECATIDTP 227 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~----~~~v~~~~~~~~~~v~~~~~ 227 (259)
+++++.+++++.++.+.|.+.+++.+||++ +|+++|+++..|+++.+........ ..++.++|.+++.+++++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 81 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDAD 81 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCC
Confidence 377899999999999999999999999999 7999999999999754432221111 36788899988999999999
Q ss_pred HHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 228 IVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 228 l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.++++.|.+.+ .+||+|++|+++|+||++
T Consensus 82 l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~ 111 (116)
T cd04643 82 IEEILHLLIDQP--FLPVVDDDGIFIGIITRR 111 (116)
T ss_pred HHHHHHHHhcCC--ceeEEeCCCeEEEEEEHH
Confidence 999999998865 599999889999999973
No 41
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.59 E-value=2.6e-14 Score=101.28 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=87.3
Q ss_pred CeeEeCCCchHHHHHHHHHHcC-CceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCC--CCceecCCCCH
Q 025005 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPI 228 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l 228 (259)
++.+++++.++.++.+.|.+.+ .+.+||++ +|+++|+++..|+++.. .... ...++.++|.. .+.++.+++++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~-~~~~--~~~~v~~~~~~~~~~~~v~~~~~l 78 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIP-TSQW--AQTTVIQVMTPAAKLVTVLSEESL 78 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHH-Hhhc--cccchhhhhcccccceEECCCCcH
Confidence 4778999999999999997664 78899999 79999999999997543 2221 24577888864 35689999999
Q ss_pred HHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 229 VDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 229 ~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
.+|++.|.+++.+.+||+|++|+++|++|++
T Consensus 79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~ 109 (114)
T cd04801 79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEA 109 (114)
T ss_pred HHHHHHHHHCCCCeeEEEcCCCcEEEEEecc
Confidence 9999999999999999999889999999864
No 42
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.59 E-value=3.3e-14 Score=100.18 Aligned_cols=105 Identities=34% Similarity=0.441 Sum_probs=91.6
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
++.+++++.++.++.+.|.+.+.+.+||+++|+++|+++..|+++.+...+.. ...++.++|..++.++++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAEGLD-PDTPVSEVMTAPPITIPPDATVFEAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhccCCC-ccCCHHHHhCCCCeEECCCCcHHHHH
Confidence 47789999999999999998888999999999999999999997555544322 23678899988899999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.|.+++..++||+++ |+++|++|++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~Giit~~ 106 (111)
T cd04800 81 LLMLERGIHHLPVVDD-GRLVGVISAT 106 (111)
T ss_pred HHHHHcCCCeeeEeEC-CEEEEEEEHH
Confidence 9999999999999996 9999999973
No 43
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.59 E-value=3.1e-14 Score=100.12 Aligned_cols=103 Identities=33% Similarity=0.344 Sum_probs=90.4
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHH
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (259)
+++.++.++.++.++++.|.+.+.+.+||++ +|++.|+++..++++ ....+. .++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~-~~~~~~----~~~~~~~~~~~~~v~~~~~l~~ 76 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISK-AVARDK----KSVEDIMTRNVITATPDEPIDV 76 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHH-HHhhCc----cCHHHhcCCCCeEECCCCcHHH
Confidence 4678899999999999999999999999999 799999999999974 333222 3478888888999999999999
Q ss_pred HHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 231 ALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++.|.+++.+.+||++++|+++|+||++
T Consensus 77 ~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~ 105 (110)
T cd04605 77 AARKMERHNISALPVVDAENRVIGIITSE 105 (110)
T ss_pred HHHHHHHhCCCEEeEECCCCcEEEEEEHH
Confidence 99999999999999999899999999973
No 44
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=1.8e-14 Score=104.08 Aligned_cols=105 Identities=22% Similarity=0.145 Sum_probs=86.8
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcc-------------cccccccCCC
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS-------------TLVEKVMTPN 218 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~-------------~~v~~~~~~~ 218 (259)
++.++++++++.++++.|.+.+++++||+| +|+++|+++..|+++.. ..+..... ......+..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLL-LSPDDLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhh-cCcchhhcccchhhhhhhhhcccccccccCC
Confidence 477899999999999999989999999999 89999999999997433 22221111 1122456667
Q ss_pred CceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+.++++++++.+|++.|.+++.+.+||+|++|+++|+||+
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~ 120 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITL 120 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEH
Confidence 8999999999999999999999999999988999999996
No 45
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.59 E-value=2.4e-14 Score=101.28 Aligned_cols=106 Identities=27% Similarity=0.368 Sum_probs=92.0
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHH
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (259)
.++.++.++.++.++.+.|.+.+.+.+||++ +|+++|+++..++. .++.........++.++|.+++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~-~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~ 80 (114)
T cd04604 2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLR-RALEKGLDILTLPVADVMTRNPKTIDPDALAAE 80 (114)
T ss_pred CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHH-HHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence 3467789999999999999888888999998 78999999999997 444443333345789999988899999999999
Q ss_pred HHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 231 ALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++.|..++...+||+|++|+++|+|++
T Consensus 81 ~~~~~~~~~~~~~~Vv~~~~~~iG~it~ 108 (114)
T cd04604 81 ALELMEENKITALPVVDDNGRPVGVLHI 108 (114)
T ss_pred HHHHHHHcCCCEEEEECCCCCEEEEEEH
Confidence 9999999999999999988999999986
No 46
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=4e-14 Score=99.90 Aligned_cols=105 Identities=30% Similarity=0.437 Sum_probs=91.2
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
++..+.++.++.++.+.|.+.++.++||++ +|+++|+++..|+++.+.. +. +...++.++|..++.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~-~~-~~~~~v~~~~~~~~~~v~~~~~~~~~ 79 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAA-GI-DLDTPVSEIMTRDLVTVDPDEPVAEA 79 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhc-cC-CCccCHHHhccCCCEEECCCCcHHHH
Confidence 367889999999999999988999999999 7999999999999754433 32 22457888998889999999999999
Q ss_pred HHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 232 LHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.|.+++...+||+|++|+++|++|++
T Consensus 80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~ 107 (112)
T cd04624 80 AKLMRKNNIRHHLVVDKGGELVGVISIR 107 (112)
T ss_pred HHHHHHcCccEEEEEcCCCcEEEEEEHH
Confidence 9999999999999999889999999973
No 47
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=2.7e-14 Score=102.37 Aligned_cols=107 Identities=31% Similarity=0.362 Sum_probs=91.4
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCC--------CcccccccccCCCCceec
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP--------ADSTLVEKVMTPNPECAT 223 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~--------~~~~~v~~~~~~~~~~v~ 223 (259)
++.++.++.++.++.+.|.+.+++.+||++ +|+++|+++..|+++.+...... ....++.+++..++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 81 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeC
Confidence 467899999999999999999999999999 69999999999997443322111 124678888988899999
Q ss_pred CCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 224 IDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++++.++++.|.+.+.+.+||+|++|+++|+||+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~ 117 (122)
T cd04803 82 PDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRS 117 (122)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHH
Confidence 999999999999999999999999889999999963
No 48
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=2.2e-14 Score=101.59 Aligned_cols=106 Identities=25% Similarity=0.328 Sum_probs=91.1
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcC-CCCcccccccccCCCCceecCCCCHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-LPADSTLVEKVMTPNPECATIDTPIVD 230 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~-~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (259)
++.+++++.++.++.+.|.+.+.+.+||++ +|+++|+++..|+++.+.... ......++.++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 81 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVD 81 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHH
Confidence 467899999999999999888888999999 799999999999986554432 112346788999888899999999999
Q ss_pred HHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 231 ALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++.|.+++...+||+|+ |+++|+||++
T Consensus 82 ~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~ 109 (114)
T cd04629 82 LAQLMLKAKPKRYPVVDD-GKLVGQISRR 109 (114)
T ss_pred HHHHHHHhCCCccCEEEC-CEEEEEEEHH
Confidence 999999999999999996 9999999963
No 49
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.57 E-value=4.3e-14 Score=98.74 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=87.3
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
++.+++++.++.++++.|.+.+.+.++|++ +|+++|+++..|+++ .. ..++.++|.+.+..+++++++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 73 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAAR-AS-------GGCCGDHAEPFKVTVSVDDDLRIV 73 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHH-hc-------ccchhhhcccCCEEECCCCCHHHH
Confidence 467899999999999999988888999998 899999999999973 21 124678888788889999999999
Q ss_pred HHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 232 LHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.|.+++...+||+|++|+++|+|+++
T Consensus 74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~ 101 (106)
T cd04582 74 LSRMFAHDMSWLPCVDEDGRYVGEVTQR 101 (106)
T ss_pred HHHHHHCCCCeeeEECCCCcEEEEEEHH
Confidence 9999999999999999889999999973
No 50
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=6.5e-14 Score=98.52 Aligned_cols=104 Identities=20% Similarity=0.310 Sum_probs=91.7
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
+++.+++.+.++.++.+.|.+.+..++||+++|+++|+++..|+.+ ...... ...++.++|.+++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~-~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~ 78 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEK-ALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV 78 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHH-HHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence 4578899999999999999988888999999899999999999974 443332 3468889999899999999999999
Q ss_pred HHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 232 LHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++|.+++.+.+||+| +|+++|+||++
T Consensus 79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~ 105 (110)
T cd04595 79 QELMVEHDIGRVPVVE-DGRLVGIVTRT 105 (110)
T ss_pred HHHHHHcCCCeeEEEe-CCEEEEEEEhH
Confidence 9999999999999999 89999999973
No 51
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.57 E-value=4.8e-14 Score=99.34 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=87.9
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (259)
++.+++++.++.++.+.|.+.+...+||++ + |+++|+++..|+++ ....... ..++.+++. ++.++++++++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~-~~~~~~~--~~~~~~~~~-~~~~v~~~~~l~~ 77 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLR-ALAEGEE--DLDLRDLLR-PPLFVPESTPLDD 77 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHH-HHHcCCC--cCCHHHHhc-CCeecCCCCcHHH
Confidence 477899999999999999988889999998 6 89999999999975 4433221 145666664 6789999999999
Q ss_pred HHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 231 ALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++.|.+++.+.+||+|++|+++|+||++
T Consensus 78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~ 106 (111)
T cd04590 78 LLEEMRKERSHMAIVVDEYGGTAGLVTLE 106 (111)
T ss_pred HHHHHHhcCCcEEEEEECCCCEEEEeEHH
Confidence 99999999999999999889999999973
No 52
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.57 E-value=6.9e-14 Score=98.57 Aligned_cols=105 Identities=18% Similarity=0.168 Sum_probs=89.9
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
++.+++++.++.++.+.|.+.+...++|+++|++.|+++..|+++... .+......++.++|.++...+++++++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~-~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~ 80 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVL-LDGLPSSTPVGEIATFPLITVDPDDFLFNAL 80 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHH-cCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence 366789999999999999988888999998789999999999974433 3222234678899988899999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.|.+++...+||+|+ |+++|+||++
T Consensus 81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~ 106 (111)
T cd04589 81 LLMTRHRIHRVVVREG-GEVVGVLEQT 106 (111)
T ss_pred HHHHHhCccEEEEeeC-CEEEEEEEhH
Confidence 9999999999999984 9999999973
No 53
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=3.2e-14 Score=104.10 Aligned_cols=106 Identities=24% Similarity=0.377 Sum_probs=90.2
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCC----------------------ccc
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA----------------------DST 209 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~----------------------~~~ 209 (259)
++.++.++.++.++++.|.+.+.+.+||+| +|+++|+++..|+++......... ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 367889999999999999999999999999 799999999999985443221110 135
Q ss_pred ccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 210 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++++|.+++..+.+++++.++++.|.+.+.+.+||+++ |+++|+||++
T Consensus 82 ~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~ 130 (135)
T cd04621 82 VAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKT 130 (135)
T ss_pred cHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHH
Confidence 788999888899999999999999999999999999996 9999999973
No 54
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.57 E-value=3.1e-14 Score=102.88 Aligned_cols=106 Identities=19% Similarity=0.229 Sum_probs=86.8
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHH-----HHhcCCCCcccccccccCCCCcee-----
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR-----VISQNLPADSTLVEKVMTPNPECA----- 222 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~-----~~~~~~~~~~~~v~~~~~~~~~~v----- 222 (259)
+.++.++.++.++++.|.+.+.+.+||++ +|+++|+++..|+.+. +......+...+++++|.+++..+
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~ 82 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLE 82 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccHH
Confidence 67899999999999999988989999999 7999999999999742 222212233467889998665433
Q ss_pred -cCCCCHHHHHHHHHhCCCceeeeecCC-CceeeEEecC
Q 025005 223 -TIDTPIVDALHIMHDGKFLHLPVVDRG-DMPITCYSKK 259 (259)
Q Consensus 223 -~~~~~l~~a~~~~~~~~~~~l~Vvd~~-~~~~Gvitr~ 259 (259)
.+++++.++++.|.+++.+.+||+|++ |+++|+||++
T Consensus 83 ~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~ 121 (126)
T cd04640 83 ELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTS 121 (126)
T ss_pred HhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHH
Confidence 368899999999999999999999986 8999999973
No 55
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=2.5e-14 Score=98.27 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=80.3
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
++.++.++.++.++++.|.+.+.+.+||+| +|+++|+++.+|+.. .. .+.++++++++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~-~~-----------------~~~~v~~~~~l~~a 63 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIA-KS-----------------EVVTATKRTTVSEC 63 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhc-CC-----------------CcEEecCCCCHHHH
Confidence 477899999999999999989999999999 899999999999963 10 17889999999999
Q ss_pred HHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 232 LHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.|.+++.+.+||+|++|+++|+||++
T Consensus 64 ~~~m~~~~~~~lpVv~~~~~~~Giit~~ 91 (96)
T cd04614 64 AQKMKRNRIEQIPIINGNDKLIGLLRDH 91 (96)
T ss_pred HHHHHHhCCCeeeEECCCCcEEEEEEHH
Confidence 9999999999999999889999999974
No 56
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=2.4e-14 Score=104.68 Aligned_cols=107 Identities=27% Similarity=0.371 Sum_probs=91.3
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCC---------------------CCccc
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL---------------------PADST 209 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~---------------------~~~~~ 209 (259)
+++.++.++.++.++.+.|.+.+.+++||++ +|+++|+++..|+.+....... .....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 4578899999999999999999999999999 7899999999999743322100 11235
Q ss_pred ccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 210 LVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 210 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.++|.+++.++++++++.++++.|.+.+.+.+||+| +|+++|+||++
T Consensus 82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~ 130 (135)
T cd04586 82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRA 130 (135)
T ss_pred CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhH
Confidence 68888988899999999999999999999999999999 89999999974
No 57
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.57 E-value=4.5e-14 Score=99.07 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=89.6
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHH
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (259)
+++..++++.++.++.+.|.+.+..++||++ +|+++|+++..|++. .... ..+++++|...+.++++++++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~-~~~~-----~~~v~~~~~~~~~~v~~~~~~~~ 75 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQ-AYKE-----AKSLEDIMLEDVFTVQPDASLRD 75 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHH-Hhhc-----CCcHhHhhcCCceEECCCCcHHH
Confidence 3577899999999999999988999999999 789999999999963 3211 24678888888999999999999
Q ss_pred HHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 231 ALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++.|.+.+..++||+|++|+++|++|++
T Consensus 76 ~~~~~~~~~~~~~~vv~~~g~~~Gvit~~ 104 (109)
T cd04583 76 VLGLVLKRGPKYVPVVDEDGKLVGLITRS 104 (109)
T ss_pred HHHHHHHcCCceeeEECCCCeEEEEEehH
Confidence 99999999999999999889999999974
No 58
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=4.7e-14 Score=98.99 Aligned_cols=101 Identities=32% Similarity=0.270 Sum_probs=89.9
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHH
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (259)
.++.++.++.++.++.+.|.+.+.+.+||++ +|+++|+++..+++. . . ...+++++|..++.++++++++.+
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~-~-----~-~~~~v~~~~~~~~~~v~~~~~l~~ 74 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAG-K-----D-PDTTIEKVMTKNPITVNPKTSVAS 74 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhc-c-----c-ccccHHHHhcCCCeEECCCCCHHH
Confidence 3578899999999999999988888999999 899999999999962 1 1 235788999888999999999999
Q ss_pred HHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 231 ALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++.|.+++...+||+|++|+++|++|++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~ 103 (108)
T cd04596 75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQ 103 (108)
T ss_pred HHHHHHHcCCCeeeEEcCCCCEEEEEEHH
Confidence 99999999999999999999999999863
No 59
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.57 E-value=5.8e-14 Score=100.44 Aligned_cols=107 Identities=24% Similarity=0.328 Sum_probs=90.7
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCC---------cccccccccCCCCceec
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPA---------DSTLVEKVMTPNPECAT 223 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~---------~~~~v~~~~~~~~~~v~ 223 (259)
++.++.++.++.++.+.|.+.+...+||+++|+++|+++..|+.+......... ...++.++|.+++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITVS 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEeC
Confidence 467899999999999999999899999999899999999999974432211100 12567788888899999
Q ss_pred CCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 224 IDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++++.++++.|.+.+.+.+||+|++|+++|+||++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~ 117 (122)
T cd04585 82 PDASVEEAAELMLERKISGLPVVDDQGRLVGIITES 117 (122)
T ss_pred CCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHH
Confidence 999999999999999999999999889999999973
No 60
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=5.2e-14 Score=100.75 Aligned_cols=106 Identities=29% Similarity=0.308 Sum_probs=90.4
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCC---------CCcccccccccCCCCceec
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNL---------PADSTLVEKVMTPNPECAT 223 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~---------~~~~~~v~~~~~~~~~~v~ 223 (259)
++.++.++.++.++++.|.+.+.+.+||+++|+++|+++..++.+.+..... .....++.++|..++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITIE 81 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEEC
Confidence 4778999999999999999889999999999999999999999754332211 1123577888888899999
Q ss_pred CCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 224 IDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++++.+++++|.+.+.+.+||+|+ |+++|+|+++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~ 116 (121)
T cd04633 82 PDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRT 116 (121)
T ss_pred CCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHH
Confidence 9999999999999999999999997 9999999974
No 61
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=6.1e-14 Score=101.52 Aligned_cols=107 Identities=23% Similarity=0.197 Sum_probs=89.7
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcC------------CCCcccccccccCCCC
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN------------LPADSTLVEKVMTPNP 219 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~------------~~~~~~~v~~~~~~~~ 219 (259)
++.++.++.++.++++.|.+.+.+.+||++ +|+++|++|..|+.+.+.... ......++.++|..++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPV 81 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCC
Confidence 467899999999999999999999999999 799999999999974332210 0112356888998889
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeec--CCCceeeEEecC
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVD--RGDMPITCYSKK 259 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd--~~~~~~Gvitr~ 259 (259)
.++++++++.++++.|.+.+.+.+||++ ++|+++|+||++
T Consensus 82 ~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~ 123 (128)
T cd04632 82 ITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKK 123 (128)
T ss_pred ceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhH
Confidence 9999999999999999999999999984 469999999974
No 62
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=5.6e-14 Score=102.32 Aligned_cols=106 Identities=25% Similarity=0.302 Sum_probs=89.6
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCc-------------------ccccc
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPAD-------------------STLVE 212 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~-------------------~~~v~ 212 (259)
++.++.++.++.++++.|.+.+.+++||++ +|+++|+++..|+++.+........ ..++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 467899999999999999988889999999 7999999999999744432211111 12788
Q ss_pred cccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 213 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|++|++
T Consensus 82 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~ 127 (132)
T cd04636 82 EIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRG 127 (132)
T ss_pred HhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHH
Confidence 888888999999999999999999999999999997 9999999973
No 63
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=8.1e-14 Score=98.19 Aligned_cols=104 Identities=25% Similarity=0.276 Sum_probs=89.8
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
++.+++++.++.++++.|.+.+.+.+||++ +|+++|+++..|++ .+..... ....++.++|.+++.++.+++++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~-~~~~~~~-~~~~~v~~~~~~~~~~v~~~~~l~~~ 79 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDIL-DLDLFES-FLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhH-HHHhhcc-cccCcHHHHhcCCcEEEcCCCcHHHH
Confidence 467899999999999999999999999999 79999999999997 4433221 12357888898888999999999999
Q ss_pred HHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 232 LHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.|.+++...+||+|+ |+++|+||+.
T Consensus 80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~ 106 (111)
T cd04626 80 LDIMREKQIGRLPVVDD-NKLIGVVRTK 106 (111)
T ss_pred HHHHHHcCCCeeeEeEC-CEEEEEEEhH
Confidence 99999999999999997 9999999973
No 64
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=5.4e-14 Score=100.82 Aligned_cols=107 Identities=27% Similarity=0.307 Sum_probs=90.5
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcC---CC-----CcccccccccCCCCceec
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN---LP-----ADSTLVEKVMTPNPECAT 223 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~---~~-----~~~~~v~~~~~~~~~~v~ 223 (259)
++.++.++.++.++.+.|.+.+.+++||++ +|+++|+++..|+++...... .. ....++.++|.+++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVT 81 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeEC
Confidence 477899999999999999988889999999 799999999999974321110 00 123567788888899999
Q ss_pred CCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 224 IDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++++.++++.|.+++.+.+||+|++|+++|++|++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~ 117 (122)
T cd04635 82 PDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRH 117 (122)
T ss_pred CCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhH
Confidence 999999999999999999999999889999999974
No 65
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=1.2e-13 Score=97.45 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=88.9
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++++.++.+|++.|.+++.+.+||+| +++++|+++..++......
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~------------------------------ 51 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN------------------------------ 51 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc------------------------------
Confidence 457889999999999999988899999998 5899999999998753000
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
.....++.++|. .++.++.+++++.++++.|.+++.+.+||+| +|+++|++|.+|++
T Consensus 52 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~ 109 (111)
T cd04603 52 ---------DYETLKVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELL 109 (111)
T ss_pred ---------cccccChhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhh
Confidence 011234667775 5678899999999999999999999999999 79999999999986
No 66
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.54 E-value=1.4e-13 Score=95.92 Aligned_cols=99 Identities=26% Similarity=0.348 Sum_probs=87.7
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
++.++.+++++.++++.|.+.+.+.+||+++|+++|+++..|+.+ .. ...++.++|.+++.++++++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~-~~------~~~~~~~~~~~~~~~v~~~~~l~~~~ 74 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRR-AH------PNRLVADAMTREVVTISPEASLLEAK 74 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhc-cc------ccCCHHHHccCCCEEECCCCCHHHHH
Confidence 467789999999999999888888999999999999999999963 11 13468888988999999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.|.+++...+||+|+ |+++|+||++
T Consensus 75 ~~~~~~~~~~~~Vv~~-~~~~G~it~~ 100 (105)
T cd04599 75 RLMEEKKIERLPVLRE-RKLVGIITKG 100 (105)
T ss_pred HHHHHcCCCEeeEEEC-CEEEEEEEHH
Confidence 9999999999999996 9999999973
No 67
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.54 E-value=8.6e-14 Score=116.82 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=100.9
Q ss_pred CcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 025005 39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (259)
Q Consensus 39 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 115 (259)
...+++++|.+ ++++++++.++.+|++.|.+++...+||+| +|+++|+++..|+.+.....
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~---------------- 263 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG---------------- 263 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC----------------
Confidence 45679999987 899999999999999999988888878887 69999999999986531100
Q ss_pred hcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHH
Q 025005 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI 195 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di 195 (259)
......+++++|. +++.++.+++++.++++.|.+++.+.+||+++|+++|++|.+|+
T Consensus 264 ---------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~di 320 (326)
T PRK10892 264 ---------------------IDLRQASIADVMT--PGGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDL 320 (326)
T ss_pred ---------------------CCcccCCHHHhcC--CCCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHh
Confidence 0012345788887 67899999999999999999999999999999999999999999
Q ss_pred HH
Q 025005 196 LM 197 (259)
Q Consensus 196 ~~ 197 (259)
++
T Consensus 321 l~ 322 (326)
T PRK10892 321 LR 322 (326)
T ss_pred Hh
Confidence 74
No 68
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.54 E-value=6.7e-14 Score=114.37 Aligned_cols=112 Identities=24% Similarity=0.306 Sum_probs=98.1
Q ss_pred CCcccccCCCCC-eeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCC
Q 025005 142 PSLSTIIPEKSK-VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (259)
Q Consensus 142 ~~v~~~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (259)
.+++++|. ++ +.++.++.++.++++.|.+.+.+++||+| +|+++|+++..|+++ ....+. ....+++++|.+++
T Consensus 155 ~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~-~~~~~~-~~~~~v~~im~~~~ 230 (268)
T TIGR00393 155 VKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRR-ALLGGG-SLKSEVRDFMTLGP 230 (268)
T ss_pred hhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHH-HHhcCC-cccCcHHHhCCCCC
Confidence 56788887 45 88999999999999999988899999999 899999999999974 433322 23467999999999
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEe
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYS 257 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvit 257 (259)
.++++++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus 231 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 231 KTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred eEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 99999999999999999999999999998899999985
No 69
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.54 E-value=1.2e-13 Score=97.04 Aligned_cols=102 Identities=31% Similarity=0.382 Sum_probs=87.8
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecC-CCCHH
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI-DTPIV 229 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~-~~~l~ 229 (259)
+++.++..+.++.++.+.|.+.+...+||++ +|+++|+++..++++ . .....++.++|...+..+.+ ++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~-~-----~~~~~~v~~~~~~~~~~~~~~~~~l~ 75 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRF-E-----TDLDKPVSEVMTPENLLTTVEGTSLE 75 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeee-c-----ccCCCCHHHhcccCceEEecCCCCHH
Confidence 4578899999999999999988899999999 799999999999852 1 11235788888877776677 99999
Q ss_pred HHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 230 DALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 230 ~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++++.|.+.+.+.+||+|++|+++|+||++
T Consensus 76 ~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~ 105 (110)
T cd04601 76 EALELLHEHKIEKLPVVDDEGKLKGLITVK 105 (110)
T ss_pred HHHHHHHHhCCCeeeEEcCCCCEEEEEEhh
Confidence 999999999999999999889999999974
No 70
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.53 E-value=2.5e-13 Score=95.52 Aligned_cols=104 Identities=31% Similarity=0.303 Sum_probs=89.6
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
++.++.++.++.++.+.|.+.+.+.+||+++|+++|+++..|+.+ ....... ...++.+.|.+++.++.+++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~-~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 79 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRR-VPAEGRE-ATVLVGDVMTRDPVTASPDETLRDAL 79 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHH-HHhcCcc-cccCHHHhccCCCeEECCCCCHHHHH
Confidence 477899999999999999988889999998899999999999974 3333222 11356788888899999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEec
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+.|.+++.+.+||+|++|+++|+||+
T Consensus 80 ~~~~~~~~~~~~V~~~~~~~~G~it~ 105 (111)
T cd04612 80 KRMAERDIGRLPVVDDSGRLVGIVSR 105 (111)
T ss_pred HHHHhCCCCeeeEEcCCCCEEEEEEH
Confidence 99999999999999988999999986
No 71
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.53 E-value=2.1e-13 Score=95.73 Aligned_cols=104 Identities=25% Similarity=0.293 Sum_probs=87.2
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
++.++.++.++.++.+.|.+.+.+.+||+++|+++|+++..|+.+.+.... .....++.++|.+++.++++++++.++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~l~~~~ 80 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGK-AKFSLPVREVMGEPLPTVDPDAPIEELS 80 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhccc-cccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence 467899999999999999999999999999899999999999975443332 2223578888988889999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++|.+ . ..+||++++|+++|+||++
T Consensus 81 ~~~~~-~-~~~~vv~~~~~~~Gvvt~~ 105 (110)
T cd04609 81 ELLDR-G-NVAVVVDEGGKFVGIITRA 105 (110)
T ss_pred HHHHh-C-CceeEEecCCeEEEEEeHH
Confidence 99988 3 3478999889999999974
No 72
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.52 E-value=8.2e-14 Score=114.33 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=99.8
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccC
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+...+++++|++..++.+++++.++.++.+.+.+.+++++||++ + ++++|+++.+|++. ...... ...++.++|.
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~-~~~~~~--~~~~l~~l~r 140 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLP-FMRSDA--EAFSMDKVLR 140 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHh-HhhccC--CcCCHHHHcC
Confidence 46778999998655899999999999999999999999999998 4 78999999999974 332211 1234778887
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+ +.++++++++.++++.|.+++.+.+||+|+.|.++|+||++
T Consensus 141 ~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTle 182 (292)
T PRK15094 141 Q-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIE 182 (292)
T ss_pred C-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHH
Confidence 4 56899999999999999999999999999999999999963
No 73
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=2.8e-13 Score=93.04 Aligned_cols=91 Identities=25% Similarity=0.345 Sum_probs=83.0
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
+++++.++.++.+|++.|.+++++.+||+| +|+++|+++..++...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~--------------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK--------------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC---------------------------------
Confidence 567899999999999999999999999998 6999999999999753
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
..+.++.++.++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 49 -----------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~ 94 (96)
T cd04614 49 -----------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94 (96)
T ss_pred -----------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhh
Confidence 2277899999999999999999999999999 69999999999986
No 74
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.52 E-value=1.6e-13 Score=97.19 Aligned_cols=101 Identities=25% Similarity=0.285 Sum_probs=86.4
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeC----CeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecC--CC
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI--DT 226 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~--~~ 226 (259)
++.++.+++++.++.+.|.+.+...+||+|+ |+++|+++..|+. .. .. ...+++++|..++..+.. ++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~-~~-~~----~~~~v~~~~~~~~~~~~~~~~~ 76 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDID-FL-TD----SETPLSEVMTPREVLVVAPTGI 76 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhh-hh-hc----cCCCHHHhcCCCceEEECCCCC
Confidence 4678899999999999998888889999983 8999999999985 22 11 124688999887777766 99
Q ss_pred CHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 227 PIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 227 ~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.++++.|.+++...+||+|++|+++|+||++
T Consensus 77 ~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~ 109 (114)
T cd04602 77 TLEEANEILRESKKGKLPIVNDDGELVALVTRS 109 (114)
T ss_pred CHHHHHHHHHhcCCCceeEECCCCeEEEEEEHH
Confidence 999999999999999999999889999999974
No 75
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.52 E-value=3.2e-13 Score=118.63 Aligned_cols=164 Identities=20% Similarity=0.229 Sum_probs=123.6
Q ss_pred cccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccc
Q 025005 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120 (259)
Q Consensus 42 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (259)
.++++|.+++++++++.++.+++++|.+++++.+||+| +++++|+++..|+....
T Consensus 88 ~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------------------------ 143 (486)
T PRK05567 88 RSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------------------------ 143 (486)
T ss_pred hhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------------------------
Confidence 46788899999999999999999999999999999999 69999999999985320
Q ss_pred cCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHH
Q 025005 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (259)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~ 199 (259)
....++.++|.. ++++++.++.++.++++.|.+.+.+.+||+| +|+++|++|.+|+++..
T Consensus 144 ------------------~~~~~V~dim~~-~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 144 ------------------DLSQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAE 204 (486)
T ss_pred ------------------cCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhh
Confidence 012345666752 5688999999999999999999999999999 89999999999998554
Q ss_pred HhcCC--C-CcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeec-CCCceeeEE
Q 025005 200 ISQNL--P-ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD-RGDMPITCY 256 (259)
Q Consensus 200 ~~~~~--~-~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Gvi 256 (259)
..... + .....+...|..+ + + -.+..+.|.+.+.+.+ |+| .+|+..|++
T Consensus 205 ~~p~a~~d~~g~l~V~aai~~~-----~-~-~~e~a~~L~~agvdvi-vvD~a~g~~~~vl 257 (486)
T PRK05567 205 EFPNACKDEQGRLRVGAAVGVG-----A-D-NEERAEALVEAGVDVL-VVDTAHGHSEGVL 257 (486)
T ss_pred hCCCcccccCCCEEEEeecccC-----c-c-hHHHHHHHHHhCCCEE-EEECCCCcchhHH
Confidence 22111 0 0112333444322 2 1 2788888888999855 666 457665544
No 76
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.52 E-value=9.2e-14 Score=124.92 Aligned_cols=120 Identities=22% Similarity=0.228 Sum_probs=102.8
Q ss_pred HhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCccccccccc
Q 025005 137 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215 (259)
Q Consensus 137 ~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~ 215 (259)
+.+...+++++|. +++.++++++++.++.+.|.+.+.+.+||+| +|+++|+++.+|+.+.+.... .....+++++|
T Consensus 442 ~~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~-~~~~~~v~dim 518 (574)
T PRK01862 442 ERLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR-DTTDKTAADYA 518 (574)
T ss_pred hHHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc-ccccchHHHhc
Confidence 3455678899997 6688999999999999999999999999999 889999999999975444332 22236788999
Q ss_pred CCCCceecCCCCHHHHHHHHHhCCCceeeeecCC--CceeeEEecC
Q 025005 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRG--DMPITCYSKK 259 (259)
Q Consensus 216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~--~~~~Gvitr~ 259 (259)
.+++.++++++++.+++++|.+++.+.+||+|++ ++++|+|||+
T Consensus 519 ~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~ 564 (574)
T PRK01862 519 HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKT 564 (574)
T ss_pred cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHH
Confidence 9999999999999999999999999999999876 5899999974
No 77
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=3.3e-13 Score=94.36 Aligned_cols=101 Identities=27% Similarity=0.338 Sum_probs=88.9
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
+++.+++.+.++.++.+.|.+.+...+||+++|+++|+++..|++. . ....+++++|...+.++++++++.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~-~------~~~~~~~~~~~~~~~~v~~~~~l~~~ 74 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLG-K------DPDETVEEIMSKDLVVAVPEMDIMDA 74 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc-c------CccccHHHhCCCCCeEECCCCCHHHH
Confidence 4578899999999999999888888899998899999999999863 1 12356888998888999999999999
Q ss_pred HHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 232 LHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.|.+++...+||+|++|+++|+|+++
T Consensus 75 ~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~ 102 (107)
T cd04610 75 ARVMFRTGISKLPVVDENNNLVGIITNT 102 (107)
T ss_pred HHHHHHhCCCeEeEECCCCeEEEEEEHH
Confidence 9999999999999999889999999863
No 78
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=2.1e-13 Score=97.56 Aligned_cols=116 Identities=23% Similarity=0.275 Sum_probs=88.5
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
+++.+++++.++.+|++.|.+++.+.+||++ +|+++|+++..|++......... .
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~------------------------~ 56 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYN------------------------N 56 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccc------------------------c
Confidence 4678999999999999999999999999998 68999999999998642211000 0
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
. .......+ .....|. +++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 57 ~---~~~~~~~~---~~~~~~~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~ 118 (120)
T cd04641 57 L---DLTVGEAL---ERRSQDF--EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDIL 118 (120)
T ss_pred c---cCCHHHHH---hhcccCC--CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhh
Confidence 0 00000000 0122333 4578999999999999999999999999999 79999999999986
No 79
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=3.3e-13 Score=96.74 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=90.6
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcC---C------CCcccccccccCCCCceec
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN---L------PADSTLVEKVMTPNPECAT 223 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~---~------~~~~~~v~~~~~~~~~~v~ 223 (259)
++.+++++.++.++.+.|.+.+++.+||+++|+++|+++..++.+.+.... . .....++.++|..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITVS 81 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeeeC
Confidence 477899999999999999999999999999899999999999975433210 0 0013467888888899999
Q ss_pred CCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 224 IDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++++.++++.|.+++...+||+|++|+++|+++++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~ 117 (122)
T cd04637 82 PDTPVDEASKLLLENSISCLPVVDENGQLIGIITWK 117 (122)
T ss_pred CCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHH
Confidence 999999999999999999999999889999999963
No 80
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.50 E-value=2e-13 Score=114.48 Aligned_cols=118 Identities=12% Similarity=0.163 Sum_probs=100.8
Q ss_pred cccccccccCC--CeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 40 ~~~v~~~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
..+|+++|.++ +.+++++.++.+|++.|.+++...+||+| +|+++|+++..|+...+...
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~----------------- 258 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGG----------------- 258 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCC-----------------
Confidence 56899999998 99999999999999999988889999998 68999999999987542110
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di 195 (259)
.....++.++|. +++.++.+++++.++++.|.+++...+||+| +|+++|++|.+|+
T Consensus 259 ---------------------~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di 315 (321)
T PRK11543 259 ---------------------GALTTPVNEAMT--RGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDF 315 (321)
T ss_pred ---------------------CCcCCcHHHhcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 011234667886 6788999999999999999999999999999 7999999999999
Q ss_pred HH
Q 025005 196 LM 197 (259)
Q Consensus 196 ~~ 197 (259)
++
T Consensus 316 ~~ 317 (321)
T PRK11543 316 YQ 317 (321)
T ss_pred Hh
Confidence 74
No 81
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=1.6e-13 Score=97.29 Aligned_cols=94 Identities=24% Similarity=0.350 Sum_probs=80.7
Q ss_pred CCCCCcCEEEEEcCCCeEEEEEehhHHHHHHHHhcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-
Q 025005 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE- 79 (259)
Q Consensus 1 m~~~~~~~~~v~~~~~~~~g~~t~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d- 79 (259)
|.+++...+||+|++++++|++|..|+.+..........+.++.++|.++++++.+++++.+|++.|.+++...+||+|
T Consensus 19 ~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 98 (114)
T cd04619 19 LGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE 98 (114)
T ss_pred HHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC
Confidence 3567889999999899999999999997544332223446789999999999999999999999999999999999998
Q ss_pred CCeEEEEEeHHHHHH
Q 025005 80 NGEVIALLDIAKCLY 94 (259)
Q Consensus 80 ~~~~vGvi~~~~i~~ 94 (259)
+|+++|+++..+++.
T Consensus 99 ~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 99 NARPLGVLNARDALK 113 (114)
T ss_pred CCcEEEEEEhHhhcc
Confidence 589999999999864
No 82
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.50 E-value=9.6e-14 Score=118.40 Aligned_cols=113 Identities=27% Similarity=0.342 Sum_probs=103.1
Q ss_pred CCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCC
Q 025005 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (259)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (259)
...+.+++. .++++|++..++.++++.|.+.|.+++.+++ ++...|++|.+|+..+.+..+.+. ..+++++|+.++
T Consensus 148 ~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~ 224 (610)
T COG2905 148 LTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPV 224 (610)
T ss_pred HHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCc
Confidence 344566666 6799999999999999999999999888888 999999999999998888877664 489999999999
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEe
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYS 257 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvit 257 (259)
.++..++.+++|+-+|.+++++++||++ +|+++|+||
T Consensus 225 ~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt 261 (610)
T COG2905 225 ISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILT 261 (610)
T ss_pred eeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEee
Confidence 9999999999999999999999999997 899999997
No 83
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.50 E-value=7.3e-13 Score=94.09 Aligned_cols=106 Identities=30% Similarity=0.343 Sum_probs=93.7
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
+.+.++.++.++.++...|.++++..+|+.+.++++|++|.+|+.+.+....... .++.++|.+++.++.+++++.++
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~~~~~~ 84 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGKRL--LPVKEVMTKPVVTVDPDTPLEEA 84 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCCcc--ccHHHhccCCcEEECCCCCHHHH
Confidence 5689999999999999999999999999999779999999999986555443321 26889999889999999999999
Q ss_pred HHHHHh-CCCceeeeecCCC-ceeeEEecC
Q 025005 232 LHIMHD-GKFLHLPVVDRGD-MPITCYSKK 259 (259)
Q Consensus 232 ~~~~~~-~~~~~l~Vvd~~~-~~~Gvitr~ 259 (259)
.+.|.+ .+.+.+||+|+++ +++|++|+.
T Consensus 85 ~~~m~~~~~~~~lpVv~~~~~~lvGivt~~ 114 (117)
T COG0517 85 LELMVERHKIRRLPVVDDDGGKLVGIITLS 114 (117)
T ss_pred HHHHHHHcCcCeEEEEECCCCeEEEEEEHH
Confidence 999999 7999999999886 999999973
No 84
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.50 E-value=7.3e-13 Score=115.14 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=120.0
Q ss_pred CCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 38 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
+...++.++|.++++++.++.++.++++.|.+++++.+||+| +++++|+++..|+...
T Consensus 86 l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~--------------------- 144 (479)
T PRK07807 86 VAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV--------------------- 144 (479)
T ss_pred HhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---------------------
Confidence 446678899999999999999999999999999999999998 6899999999998421
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di 195 (259)
....+++++|. +++.++++++++.+++++|.+++.+.+||+| +|+++|+||.+|+
T Consensus 145 ----------------------~~~~~V~diMt--~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DI 200 (479)
T PRK07807 145 ----------------------DRFTQVRDVMS--TDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGA 200 (479)
T ss_pred ----------------------ccCCCHHHhcc--CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 01134777887 6799999999999999999999999999999 8999999999999
Q ss_pred HHHHHhcCCCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeec
Q 025005 196 LMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD 247 (259)
Q Consensus 196 ~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd 247 (259)
++.. ...... ..-+..+-... +.......+..+.|.+.+.+.+ ++|
T Consensus 201 l~~~-~~~~~~--~~~g~l~V~aa--v~~~~~~~~~a~~Lv~aGvd~i-~~D 246 (479)
T PRK07807 201 LRAT-IYTPAV--DAAGRLRVAAA--VGINGDVAAKARALLEAGVDVL-VVD 246 (479)
T ss_pred HHHh-hCCchh--hhhhccchHhh--hccChhHHHHHHHHHHhCCCEE-EEe
Confidence 8433 322110 00000111111 2223346677888888888774 556
No 85
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.50 E-value=3.6e-13 Score=117.82 Aligned_cols=108 Identities=26% Similarity=0.293 Sum_probs=94.9
Q ss_pred cccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeC----CeeeEEeehHHHHHHHHhcCCCCcccccccccCC--
Q 025005 144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-- 217 (259)
Q Consensus 144 v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~-- 217 (259)
.++.|. .++.+++++.++.++.++|.+.+++.+||+++ |+++|++|.+|+. .. .....+++++|.+
T Consensus 98 ~e~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~-~~-----~~~~~~V~diMt~~~ 169 (495)
T PTZ00314 98 FENGFI--MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID-FV-----KDKSTPVSEVMTPRE 169 (495)
T ss_pred cccccc--cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh-hc-----ccCCCCHHHhhCCcC
Confidence 455665 67899999999999999999999999999994 7999999999984 21 1234689999987
Q ss_pred CCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.++++++++.+++++|.+++...+||+|++++++|+||++
T Consensus 170 ~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~ 211 (495)
T PTZ00314 170 KLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRS 211 (495)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEeh
Confidence 789999999999999999999999999999999999999984
No 86
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=2.4e-13 Score=96.29 Aligned_cols=94 Identities=26% Similarity=0.359 Sum_probs=81.6
Q ss_pred CCCCCcCEEEEEcCC-CeEEEEEehhHHHHHHHHhcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee
Q 025005 1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE 79 (259)
Q Consensus 1 m~~~~~~~~~v~~~~-~~~~g~~t~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d 79 (259)
|.+++.+.+||++++ ++++|++|..|+++.+........+.++.++|..++.++++++++.++++.|.+++...+||++
T Consensus 19 ~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd 98 (114)
T cd04630 19 MKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE 98 (114)
T ss_pred HHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee
Confidence 345678899999986 8999999999998666554434456789999999999999999999999999999999999998
Q ss_pred CCeEEEEEeHHHHHH
Q 025005 80 NGEVIALLDIAKCLY 94 (259)
Q Consensus 80 ~~~~vGvi~~~~i~~ 94 (259)
+|+++|+++..+++.
T Consensus 99 ~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 99 NNELIGIISLTDIFL 113 (114)
T ss_pred CCEEEEEEEHHHhhc
Confidence 899999999999874
No 87
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=5e-13 Score=94.62 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=87.9
Q ss_pred CCCeEEeCcchHHHHHHHHHhCC-ccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCC
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGK-FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~-~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (259)
+++.+++++.++.+|++.|.+++ ...+||+| +++++|+++..+++......
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~--------------------------- 53 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ--------------------------- 53 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh---------------------------
Confidence 35678999999999999997764 88999998 58999999999988652110
Q ss_pred ChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....++.++|.....+.++.+++++.++++.|.+++.+.+||++ +|+++|++|.+|++
T Consensus 54 ------------~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~ 112 (114)
T cd04801 54 ------------WAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLL 112 (114)
T ss_pred ------------ccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEecccee
Confidence 01234556665323366899999999999999999999999999 69999999999986
No 88
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.49 E-value=1.4e-12 Score=113.29 Aligned_cols=160 Identities=12% Similarity=0.043 Sum_probs=119.1
Q ss_pred CCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 37 ~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
.....++.++|.++++++.+++++.+++++|.+++++.+||+|+++++|+++..|+...
T Consensus 84 ~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~--------------------- 142 (475)
T TIGR01303 84 TVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV--------------------- 142 (475)
T ss_pred HHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC---------------------
Confidence 34467788899999999999999999999999999999999998899999999997421
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di 195 (259)
....+++++|+ +++.++++++++.+++++|.+++.+.+||+| +|+++|+||.+|+
T Consensus 143 ----------------------~~~~~V~dIMt--~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DL 198 (475)
T TIGR01303 143 ----------------------DRFTQVRDIMS--TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGA 198 (475)
T ss_pred ----------------------CCCCCHHHHcc--CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHH
Confidence 01134777887 6799999999999999999999999999999 8999999999999
Q ss_pred HHHHHhcCCCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeec
Q 025005 196 LMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVD 247 (259)
Q Consensus 196 ~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd 247 (259)
++.. ...... ..+. -..--..+.......+-++.|.+.+.+.+. +|
T Consensus 199 l~~~-~~~~~~---d~~g-rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~-~D 244 (475)
T TIGR01303 199 LRAT-IYTPAT---DAAG-RLRIGAAVGINGDVGGKAKALLDAGVDVLV-ID 244 (475)
T ss_pred HHHH-hCCchh---hhcc-CceehheeeeCccHHHHHHHHHHhCCCEEE-Ee
Confidence 8433 322110 0011 000011222334456677777777776653 35
No 89
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49 E-value=6.3e-13 Score=94.81 Aligned_cols=110 Identities=22% Similarity=0.338 Sum_probs=89.5
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++++.++.+|++.|.+++...+||+| +++++|+++..++.......
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~----------------------------- 52 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG----------------------------- 52 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC-----------------------------
Confidence 568899999999999999989999999998 58999999999998753210
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C---CeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---g~~~Giit~~di~ 196 (259)
......+++++|.+..++.++.+++++.+++++|.+++.+.+||++ + |+++|++|..|++
T Consensus 53 --------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~ 116 (118)
T cd04617 53 --------ADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred --------CCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhee
Confidence 0011233455665213688999999999999999999999999999 5 6999999999985
No 90
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=8.8e-13 Score=91.81 Aligned_cols=102 Identities=25% Similarity=0.310 Sum_probs=87.6
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
++.++++++++.++++.|.+++...+||+|+++++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~~--------------------------------- 48 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRAH--------------------------------- 48 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhccc---------------------------------
Confidence 56788999999999999998888999999999999999999987530
Q ss_pred hHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
...++.++|. +++.++++++++.++++.|.+.+...+||+++|+++|++|..|++
T Consensus 49 ----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~~l~ 103 (105)
T cd04599 49 ----------PNRLVADAMT--REVVTISPEASLLEAKRLMEEKKIERLPVLRERKLVGIITKGTIA 103 (105)
T ss_pred ----------ccCCHHHHcc--CCCEEECCCCCHHHHHHHHHHcCCCEeeEEECCEEEEEEEHHHhc
Confidence 0112445554 568899999999999999999999999999999999999999985
No 91
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.48 E-value=7.9e-13 Score=92.72 Aligned_cols=105 Identities=30% Similarity=0.356 Sum_probs=89.2
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHH
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDA 231 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a 231 (259)
++.+++.+.++.++.+.|.+.+.+.+||++ +++++|+++..|++..... ........+.++|..++.++++++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAE-GGLDPLVTVGDVMTRDVVTVSPDTSLEEA 80 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHh-ccCCccccHHHHhcCCceecCCCcCHHHH
Confidence 367789999999999999988889999999 6999999999999854433 22222223667788888999999999999
Q ss_pred HHHHHhCCCceeeeecCCCceeeEEec
Q 025005 232 LHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++.|.+.+...+||+|++|+++|++++
T Consensus 81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~ 107 (113)
T cd02205 81 AELMLEHGIRRLPVVDDEGRLVGIVTR 107 (113)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEH
Confidence 999999999999999988999999986
No 92
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=1.6e-12 Score=91.39 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=90.2
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
+++.+++.+.++.++.+.|.+++...+||+|+++++|+++..++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKALRHG----------------------------- 52 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence 467889999999999999998888999999989999999999987642100
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
....++.++|. +.+.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 53 ----------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~ 108 (110)
T cd04595 53 ----------LGHAPVKDYMS--TDVVTVPPDTPLSEVQELMVEHDIGRVPVVEDGRLVGIVTRTDLL 108 (110)
T ss_pred ----------cccCcHHHHhc--CCCEEECCCCcHHHHHHHHHHcCCCeeEEEeCCEEEEEEEhHHhh
Confidence 01234556665 568899999999999999999999999999989999999999986
No 93
>PRK11573 hypothetical protein; Provisional
Probab=99.48 E-value=2.3e-12 Score=110.75 Aligned_cols=166 Identities=11% Similarity=0.141 Sum_probs=126.9
Q ss_pred HHHhcCCCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHhhh
Q 025005 31 VIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEK 106 (259)
Q Consensus 31 ~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~--~~~vGvi~~~~i~~~~~~~~~~~~~~ 106 (259)
++.+-.++.+.+++++|++ ++++++.+.++.++++.+.+++++++||+++ ++++|++...|++......
T Consensus 177 mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~------- 249 (413)
T PRK11573 177 MLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK------- 249 (413)
T ss_pred HHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc-------
Confidence 3345568889999999976 7899999999999999999999999999983 8999999999998642110
Q ss_pred hHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCe
Q 025005 107 GKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK 185 (259)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~ 185 (259)
.. .....+.+++ +++..++++.++.++++.|.+.+.+.++|+| .|.
T Consensus 250 ~~------------------------------~~~~~l~~~~---r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~ 296 (413)
T PRK11573 250 KE------------------------------FTKENMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGD 296 (413)
T ss_pred Cc------------------------------CCHHHHHhhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCC
Confidence 00 0000112233 5688999999999999999999999999999 899
Q ss_pred eeEEeehHHHHHHHHhcCCCCcccc-ccccc--CCCCceecCCCCHHHHHHHHH
Q 025005 186 PRGILTSKDILMRVISQNLPADSTL-VEKVM--TPNPECATIDTPIVDALHIMH 236 (259)
Q Consensus 186 ~~Giit~~di~~~~~~~~~~~~~~~-v~~~~--~~~~~~v~~~~~l~~a~~~~~ 236 (259)
..|+||..|+++.++..-.+..... ...+. ..+.+.++...++.+..+.+.
T Consensus 297 ~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~d~~~~l~ 350 (413)
T PRK11573 297 IQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFN 350 (413)
T ss_pred eEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeeeEHHHHHHHhC
Confidence 9999999999999987644332111 11122 234578899999999988873
No 94
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.48 E-value=3e-12 Score=110.96 Aligned_cols=174 Identities=14% Similarity=0.199 Sum_probs=136.8
Q ss_pred EEEEehhHHHHHHHHhcCCCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee--CCeEEEEEeHHHHHH
Q 025005 19 CGILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLY 94 (259)
Q Consensus 19 ~g~~t~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d--~~~~vGvi~~~~i~~ 94 (259)
.|+++..+ +.++.+-.++.+.+++++|++ ++++++.+.+..++.+.+.+++++++||++ .+.++|++..+|++.
T Consensus 186 ~g~~~~~E--~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~ 263 (429)
T COG1253 186 EGVLEEEE--REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLR 263 (429)
T ss_pred cCCcCHHH--HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHH
Confidence 57888887 577778889999999999986 788999999999999999999999999999 389999999999998
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcC
Q 025005 95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR 174 (259)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 174 (259)
.....-. .......+ +++..++++.++.++++.|++.+
T Consensus 264 ~~~~~~~---------------------------------------~~~~~~~~---~~~~~Vpet~~~~~lL~~~r~~~ 301 (429)
T COG1253 264 ALLDGQS---------------------------------------DLDLRVLV---RPPLFVPETLSLSDLLEEFREER 301 (429)
T ss_pred HHhcCcc---------------------------------------ccchhhcc---cCCeEecCCCcHHHHHHHHHHhC
Confidence 7432100 00011111 36899999999999999999999
Q ss_pred CceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcc----cccccccCCCCceecCCCCHHHHHHHHHh
Q 025005 175 LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS----TLVEKVMTPNPECATIDTPIVDALHIMHD 237 (259)
Q Consensus 175 ~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~----~~v~~~~~~~~~~v~~~~~l~~a~~~~~~ 237 (259)
.+.+.|+| .|...|++|..|+++.+...-.+... .......... +.++..+++.+..+.+--
T Consensus 302 ~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~-~~v~G~~~l~e~~~~l~~ 368 (429)
T COG1253 302 THMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDG-WLVDGRVPLEELEELLGI 368 (429)
T ss_pred CeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCc-EEEeccccHHHHHHHhCC
Confidence 99999999 89999999999999888875443321 1222222224 778899999988888764
No 95
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=4.7e-13 Score=94.03 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=83.2
Q ss_pred eCCCchHHHHHHHHHHcC-----CceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHH
Q 025005 157 ISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVD 230 (259)
Q Consensus 157 v~~~~~l~~~~~~~~~~~-----~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~ 230 (259)
+.++.++.++++.|.+.+ +..+||++ +|+++|+++.+++++ . . ...++.+++.+++..+++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~-----~-~-~~~~v~~~~~~~~~~i~~~~~~~~ 74 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLL-----A-D-PDTPVSDIMDTDVISVSADDDQEE 74 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhc-----C-C-CcchHHHHhCCCCeEEcCCCCHHH
Confidence 568889999999998776 46789998 799999999999863 1 1 235788888888999999999999
Q ss_pred HHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 231 ALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 231 a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++.|...+...+||+|++|+++|+||++
T Consensus 75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~ 103 (109)
T cd04606 75 VARLFEKYDLLALPVVDEEGRLVGIITVD 103 (109)
T ss_pred HHHHHHHcCCceeeeECCCCcEEEEEEhH
Confidence 99999999999999999889999999973
No 96
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.47 E-value=1.5e-12 Score=91.56 Aligned_cols=109 Identities=24% Similarity=0.321 Sum_probs=90.2
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
+++.+++.+.++.++.+.|.+++.+.+||+++++++|+++..++...+...
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~----------------------------- 51 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRVVAE----------------------------- 51 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHhcc-----------------------------
Confidence 356789999999999999998889999999999999999999998642210
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
......++.++|. .++.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 52 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~ 109 (111)
T cd04800 52 --------GLDPDTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDDGRLVGVISATDLL 109 (111)
T ss_pred --------CCCccCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhh
Confidence 0011233555564 568899999999999999999999999999989999999999986
No 97
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=1.2e-12 Score=94.03 Aligned_cols=119 Identities=22% Similarity=0.287 Sum_probs=92.9
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
+++.+++++.++.++.+.|.+++++.+||++ +|+++|+++..+++......... .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~-----~------------------- 57 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRR-----P------------------- 57 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccc-----h-------------------
Confidence 5678999999999999999999999999998 59999999999997642211000 0
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
............++.++|. +.+.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~ 122 (124)
T cd04600 58 ---LRGRLRGRDKPETVGDIMS--PPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLI 122 (124)
T ss_pred ---hhhhhhcccccccHHHhcc--CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhh
Confidence 0000001112335667776 6789999999999999999999999999999 99999999999986
No 98
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.47 E-value=1.1e-12 Score=91.45 Aligned_cols=96 Identities=23% Similarity=0.148 Sum_probs=84.4
Q ss_pred eEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHHHH
Q 025005 155 VTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHI 234 (259)
Q Consensus 155 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~ 234 (259)
.++.++.++.++++.|.+.+...+||+++|+++|+++..|+++ . . ..++.++|.+.+.++++++++.++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~-~-----~--~~~~~~~~~~~~~~v~~~~~l~~a~~~ 75 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIEN-A-----T--YGDVVDYIVRGIPYVRLTSTAEEAWEV 75 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhh-h-----c--ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence 4678999999999999999999999998899999999999863 1 1 134667888888999999999999999
Q ss_pred HHhCCCceeeeecCCCceeeEEecC
Q 025005 235 MHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 235 ~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
|.+++...+||+| +|+++|+||++
T Consensus 76 ~~~~~~~~~~Vv~-~~~~iGvit~~ 99 (104)
T cd04594 76 MMKNKTRWCPVVD-DGKFKGIVTLD 99 (104)
T ss_pred HHHcCcceEEEEE-CCEEEEEEEHH
Confidence 9999999999998 69999999963
No 99
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=8.8e-13 Score=92.44 Aligned_cols=103 Identities=14% Similarity=0.249 Sum_probs=87.9
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
.++.++++++++.++.+.|.+++...+||+| +|+++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD------------------------------- 50 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------------------------------
Confidence 3577899999999999999998889999998 59999999999986420
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
...++.++|. ..+.++.++.++.++++.|.+.+...+||++ +|+++|++|..|++
T Consensus 51 ------------~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~ 106 (108)
T cd04596 51 ------------PDTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVL 106 (108)
T ss_pred ------------ccccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 0123455564 5688999999999999999999999999999 89999999999986
No 100
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.46 E-value=6.4e-13 Score=107.18 Aligned_cols=131 Identities=15% Similarity=0.239 Sum_probs=110.2
Q ss_pred hHHHHHHHHhcCCCCccccccccc--CCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHH
Q 025005 25 KDIATRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARME 101 (259)
Q Consensus 25 ~di~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~ 101 (259)
.-|-+.+..+.....=..|+|+|. .+..++.+.+++.+-.++-.+.+++++||+| ..+++|+++..|+...
T Consensus 172 tmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~------ 245 (432)
T COG4109 172 TMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK------ 245 (432)
T ss_pred HHHHHHHHHhhhhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC------
Confidence 334444433333333368999998 5888999999999999999999999999999 5899999999998864
Q ss_pred HHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEe
Q 025005 102 RAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT 181 (259)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~ 181 (259)
....++..+|+ +++.++.+.++++.+.+.|...++..+||+
T Consensus 246 -------------------------------------~~~t~ieKVMt--knp~tv~~~tsVAsvaq~MiwE~iem~PVv 286 (432)
T COG4109 246 -------------------------------------KPSTTIEKVMT--KNPITVRAKTSVASVAQMMIWEGIEMLPVV 286 (432)
T ss_pred -------------------------------------CCCccHHHHhc--cCCeeecccchHHHHHHHHHhccceeeeEE
Confidence 34556778887 779999999999999999999999999999
Q ss_pred e-CCeeeEEeehHHHHHHHH
Q 025005 182 V-ENKPRGILTSKDILMRVI 200 (259)
Q Consensus 182 ~-~g~~~Giit~~di~~~~~ 200 (259)
+ +.+++|++|++|+++.+.
T Consensus 287 ~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 287 DSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred cCCceEEEEEEHHHHHHHHH
Confidence 9 999999999999996664
No 101
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=1.7e-12 Score=91.67 Aligned_cols=108 Identities=27% Similarity=0.355 Sum_probs=89.5
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.++.++.++.++++.|.+.+...+||+| +++++|+++..++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALES----------------------------- 52 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhh-----------------------------
Confidence 356889999999999999999999999998 58999999999997642211
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
+.....++.++|. +++.++.+++++.++++.|.+.+...+||++ +|+++|++|..|++
T Consensus 53 --------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~ 111 (113)
T cd04615 53 --------EELKDAKVREVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDIL 111 (113)
T ss_pred --------hhhcCCcHHHhcc--CCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhh
Confidence 0112334566675 5688999999999999999999998999999 78999999999986
No 102
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.46 E-value=3.2e-13 Score=108.91 Aligned_cols=111 Identities=25% Similarity=0.253 Sum_probs=101.7
Q ss_pred CCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCc
Q 025005 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220 (259)
Q Consensus 142 ~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 220 (259)
..++++|.+..+...+.+++++.+..++..+.+.+++||+| ..+++|++|.+|+. ... ...++..+|+++|.
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~------~~~-~~t~ieKVMtknp~ 260 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVL------DKK-PSTTIEKVMTKNPI 260 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhh------cCC-CCccHHHHhccCCe
Confidence 45688998777899999999999999999999999999999 89999999999996 222 35889999999999
Q ss_pred eecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 221 CATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.+.+++..+.++|.-.++.-+||+|++.+++|+|||.
T Consensus 261 tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~ 299 (432)
T COG4109 261 TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQ 299 (432)
T ss_pred eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHH
Confidence 999999999999999999999999999999999999984
No 103
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=2.6e-12 Score=90.28 Aligned_cols=106 Identities=27% Similarity=0.413 Sum_probs=88.7
Q ss_pred cCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCC
Q 025005 48 TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (259)
Q Consensus 48 ~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (259)
++++++++++.++.++++.|.+++...+||++ +|+++|+++..+++......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~--------------------------- 53 (110)
T cd04605 1 SRPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD--------------------------- 53 (110)
T ss_pred CCCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC---------------------------
Confidence 35778899999999999999999999999998 58999999999997542110
Q ss_pred ChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
..++.++|. +++.++.+++++.++++.|.+.+.+.+||++ +|++.|++|..|++
T Consensus 54 --------------~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~ 108 (110)
T cd04605 54 --------------KKSVEDIMT--RNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDIS 108 (110)
T ss_pred --------------ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhh
Confidence 012444554 5688899999999999999999989999999 89999999999985
No 104
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=1.8e-12 Score=94.76 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=93.5
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.++.++.++.+|++.|.+++...+||+| +++++|+++..+++........... .+..+..... .+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~-~~~~~~~~~~-----~~------ 69 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGL-PKKSIKMKRK-----AG------ 69 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhccccccc-chhhhhhhhh-----cc------
Confidence 467889999999999999999999999999 5999999999999876432100000 0000000000 00
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
............+++++|. +++..+.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 70 --~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~ 133 (135)
T cd04621 70 --QKRYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDIC 133 (135)
T ss_pred --cccccccccccccHHHhcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHh
Confidence 0000000122446778886 678899999999999999999999999999989999999999986
No 105
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.45 E-value=2.9e-12 Score=89.39 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=86.2
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++++.++.+|++.|.+++...+||++ +|+++|+++..++....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~-------------------------------- 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARAS-------------------------------- 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhc--------------------------------
Confidence 567889999999999999988899999998 69999999999997530
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
..++.++|. +.+..+.+++++.++++.|.+.+...+||++ +|+++|+++.++++
T Consensus 50 ------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~ 104 (106)
T cd04582 50 ------------GGCCGDHAE--PFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIA 104 (106)
T ss_pred ------------ccchhhhcc--cCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhh
Confidence 012445554 4577899999999999999999999999999 78999999999986
No 106
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.7e-12 Score=95.86 Aligned_cols=106 Identities=26% Similarity=0.315 Sum_probs=89.6
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCC---------------------------
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLP--------------------------- 205 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~--------------------------- 205 (259)
++.+++++.++.++.+.|.+.+++.+||+++|+++|+++..|+++.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETKR 81 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHHH
Confidence 47789999999999999999999999999989999999999997544322200
Q ss_pred ----CcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 206 ----ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 206 ----~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
....++.++|..++.++++++++.++++.|.+.+.+.+||+++ |+++|+|+++
T Consensus 82 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~ 138 (143)
T cd04634 82 ALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRG 138 (143)
T ss_pred HHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHH
Confidence 0134677788888999999999999999999999999999996 9999999963
No 107
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.7e-12 Score=91.34 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=88.4
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.++.+++++.++++.|.+.+...+||++ +|+++|+++..++.......
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEG----------------------------- 52 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhc-----------------------------
Confidence 567889999999999999888889999999 48999999999998642210
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....++.++|. .++.+++++.++.++++.|.+++...+||++ +|+++|++|..|+.
T Consensus 53 ----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~ 109 (111)
T cd04639 53 ----------GPDAPVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVG 109 (111)
T ss_pred ----------CCCCcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhh
Confidence 01123555665 5688999999999999999999999999999 69999999999985
No 108
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2e-12 Score=91.42 Aligned_cols=110 Identities=25% Similarity=0.414 Sum_probs=90.1
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++++.++.++.+.|.+++...+||++ +++++|+++..++++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~-------------------------- 55 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYH-------------------------- 55 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhc--------------------------
Confidence 567889999999999999988888999998 68999999999998754321000
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
.....++.++|. +++..+.+++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 56 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~ 112 (114)
T cd04629 56 ---------CDGVATVRDIMT--TEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVL 112 (114)
T ss_pred ---------cCCCccHHHHhc--cCceEECCCCcHHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHh
Confidence 011234556665 568889999999999999999999999999989999999999986
No 109
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.44 E-value=7.7e-13 Score=113.65 Aligned_cols=114 Identities=14% Similarity=0.110 Sum_probs=99.6
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee--CCeeeEEeehHHHHHHHHhcCCCCcccccccccC
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+...+++++|++..++++++.++++.++.+.+.+++++++||++ .++++|+++.+|++.. ... ...++.++|.
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~-~~~----~~~~l~~~~~ 262 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPH-LNK----KNFDWQSLLR 262 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhH-hcc----CCCCHHHHcC
Confidence 35778999999767899999999999999999999999999998 3689999999999743 222 1235677776
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++.++++++++.++++.|.+++.+.++|+|+.|.+.|+||.
T Consensus 263 -~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~ 303 (408)
T TIGR03520 263 -EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTL 303 (408)
T ss_pred -CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEH
Confidence 57899999999999999999999999999999999999985
No 110
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.44 E-value=8.2e-13 Score=115.47 Aligned_cols=101 Identities=27% Similarity=0.260 Sum_probs=89.7
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEeeC----CeeeEEeehHHHHHHHHhcCCCCcccccccccCC--CCceecCCCC
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTP 227 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 227 (259)
+.++++++++.++++.|.+.+++.+||+|+ |+++|++|..|+. .. ......+++++|.+ ++.+++++++
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr-~~----~~~~~~~V~dIMt~~~~~itv~~d~~ 181 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYR-IS----RMSLDTKVKDFMTPFEKLVTANEGTT 181 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhh-cc----ccCCCCCHHHHhCCCCCeEEECCCCc
Confidence 468999999999999999999999999994 7999999999984 22 12345789999996 6788999999
Q ss_pred HHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 228 IVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 228 l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.+|+++|.++++..+||||++|+++|+||++
T Consensus 182 l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~ 213 (502)
T PRK07107 182 LKEANDIIWDHKLNTLPIVDKNGNLVYLVFRK 213 (502)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhH
Confidence 99999999999999999999899999999974
No 111
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.44 E-value=1.8e-12 Score=112.80 Aligned_cols=109 Identities=29% Similarity=0.297 Sum_probs=95.9
Q ss_pred CcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C---CeeeEEeehHHHHHHHHhcCCCCcccccccccC-C
Q 025005 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P 217 (259)
Q Consensus 143 ~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~-~ 217 (259)
..++.|. +++.+++++.++.++.++|.+.+++.+||++ + ++++|+++.+|++ ... ....+++++|. .
T Consensus 81 ~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~-~~~-----~~~~~V~dvm~~~ 152 (450)
T TIGR01302 81 RAENGII--SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR-FVK-----DKGKPVSEVMTRE 152 (450)
T ss_pred cccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHh-hhh-----cCCCCHHHhhCCC
Confidence 3566665 6799999999999999999999999999999 5 6999999999996 221 12467899998 4
Q ss_pred CCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.++++++++.++++.|.+++.+.+||+|++|+++|+||++
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~ 194 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMK 194 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhH
Confidence 899999999999999999999999999999999999999974
No 112
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.44 E-value=1.2e-12 Score=93.62 Aligned_cols=105 Identities=25% Similarity=0.243 Sum_probs=88.8
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCC--------CCcccccccccCCCCceec
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL--------PADSTLVEKVMTPNPECAT 223 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~--------~~~~~~v~~~~~~~~~~v~ 223 (259)
++.+++++.++.++.+.|.+.+++.+||++ +|+++|+++..++.+....... .....++.++|..++.+++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 81 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVH 81 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEEC
Confidence 467899999999999999988888999999 7999999999999743321100 1223578888988899999
Q ss_pred CCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 224 IDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 224 ~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++++.+++++|.+++...+||+|+ |+++|++++
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~ 115 (121)
T cd04584 82 PLDTVEEAALLMREHRIGCLPVVED-GRLVGIITE 115 (121)
T ss_pred CCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEH
Confidence 9999999999999999999999996 999999986
No 113
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=3e-12 Score=90.13 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=88.8
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++++.++.++++.|.+++.+.+||++ +|+++|+++..++.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFE----------------------------- 52 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhc-----------------------------
Confidence 567889999999999999999999999998 59999999999997642110
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
.....++.++|. +++.++.+++++.++++.|.+++.+.+||+++|+++|++|..|++
T Consensus 53 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~ 109 (111)
T cd04626 53 ---------SFLEKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDDNKLIGVVRTKDIL 109 (111)
T ss_pred ---------ccccCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEhHHhc
Confidence 001123555565 668899999999999999999999999999989999999999986
No 114
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.44 E-value=3.7e-12 Score=89.53 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=89.1
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
++.+++++.++.++++.|.+++...+||.++++++|+++..++........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~~~~----------------------------- 52 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLASGP----------------------------- 52 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHhcCC-----------------------------
Confidence 467889999999999999988888999999999999999999986522100
Q ss_pred hHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....++.++|. +++.++.+++++.++++.|.+.+.+.+||++ +|++.|+++.+|++
T Consensus 53 ---------~~~~~v~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~ 109 (111)
T cd04611 53 ---------DLQTPVGEVMS--SPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLL 109 (111)
T ss_pred ---------CCCcCHHHhcC--CCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhh
Confidence 01234556664 5688899999999999999999999999999 79999999999986
No 115
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=3.9e-12 Score=89.63 Aligned_cols=109 Identities=22% Similarity=0.292 Sum_probs=89.4
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
++.+++++.++.++++.|.+.+.+.+||+++++++|+++..+++..+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKVVSRN----------------------------- 52 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHHhhcc-----------------------------
Confidence 567889999999999999998899999999779999999999987532110
Q ss_pred hHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
......++.++|. +++..+.+++++.++++.|.+.+...+||+++++++|+++..|++
T Consensus 53 -------~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~ 110 (112)
T cd04802 53 -------LKPREVPVGEVMS--TPLITIDPNASLNEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIV 110 (112)
T ss_pred -------CCcccCCHHHhcC--CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhh
Confidence 0011223556665 568889999999999999999999999999956999999999986
No 116
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.44 E-value=2.4e-12 Score=89.88 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=83.3
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEeeC----CeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCC
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP 227 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 227 (259)
+....++++.++.++.+.+.+.+...+||+++ |+++|+++..|+.+.. .. +|.+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~-~~-----------~m~~~~~~v~~~~~ 69 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL-KN-----------YIDPSPFTVSPRTS 69 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH-HH-----------hccCCCceECCCCc
Confidence 45778899999999999999888888999985 8999999999996333 22 67778889999999
Q ss_pred HHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 228 IVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 228 l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.++++.|.+++.+.+||++ +|+++|+||++
T Consensus 70 l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~ 100 (105)
T cd04591 70 LEKVHQLFRKLGLRHLLVVD-EGRLVGIITRK 100 (105)
T ss_pred HHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhh
Confidence 99999999999999999996 79999999984
No 117
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.44 E-value=9.8e-13 Score=115.20 Aligned_cols=102 Identities=25% Similarity=0.230 Sum_probs=91.6
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEeeC----CeeeEEeehHHHHHHHHhcCCCCcccccccccCCC--CceecCC
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PECATID 225 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~ 225 (259)
+++++++++.++.++.++|.+++++.+||+|+ |+++|++|.+|+. ... +...+++++|.++ +.+++++
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~-~v~-----~~~~~V~eIMt~~~~lvtv~~~ 181 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWD-FVN-----DRETKLSEVMTSDDDLVTAPAG 181 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHh-hcc-----ccCCcHHHHhccCCCcEEECCC
Confidence 67999999999999999999999999999994 7999999999994 221 2357899999976 7799999
Q ss_pred CCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 226 TPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 226 ~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++.+|++.|.+++...+||||++++++|+||++
T Consensus 182 ~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~ 215 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRT 215 (505)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHH
Confidence 9999999999999999999999999999999974
No 118
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=3.7e-12 Score=89.78 Aligned_cols=109 Identities=22% Similarity=0.302 Sum_probs=88.3
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
++.+++++.++.++++.|.+++...++|.++|+++|+++..++........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~----------------------------- 52 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAMAQHG----------------------------- 52 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHHHhcC-----------------------------
Confidence 467889999999999999888777777777899999999999986532100
Q ss_pred hHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
......++.++|. ..+.++.+++++.++++.|.+.+...+||+++|+++|++|.+|++
T Consensus 53 -------~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~ 110 (112)
T cd04625 53 -------AGVLDTTVRAIMN--PEPIVASPDDSIDEVRRLMVERHLRYLPVLDGGTLLGVISFHDVA 110 (112)
T ss_pred -------CchhcCCHHHHhC--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEECCEEEEEEEHHHhh
Confidence 0001234566675 568889999999999999999999999999999999999999986
No 119
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=2.4e-12 Score=90.94 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=88.7
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++++++++.++.++++.|.+.+...+||++ +++++|+++..++.......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~----------------------------- 53 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKG----------------------------- 53 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcC-----------------------------
Confidence 456789999999999999988899999998 68999999999987642210
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
.....++.++|. +.+.++.+++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 54 ---------LSLDDPVSEVMN--RNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred ---------CCcCCCHHHhhc--CCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 011223556665 5688999999999999999999999999999 89999999999986
No 120
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.44 E-value=3.4e-12 Score=89.82 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=89.1
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
++++++++.++.++++.|.+++...+||+|+++++|+++..++.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~------------------------------ 51 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAVLLD------------------------------ 51 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHHHcC------------------------------
Confidence 46788999999999999998888899999888999999999987642110
Q ss_pred hHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
......++.++|. +++..+++++++.++++.|.+.+...+||+++|+++|++|..|++
T Consensus 52 -------~~~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~ 109 (111)
T cd04589 52 -------GLPSSTPVGEIAT--FPLITVDPDDFLFNALLLMTRHRIHRVVVREGGEVVGVLEQTDLL 109 (111)
T ss_pred -------CCCCCCCHHHHhC--CCcEEECCCCcHHHHHHHHHHhCccEEEEeeCCEEEEEEEhHHhh
Confidence 0011233556665 578899999999999999999999999999989999999999986
No 121
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.7e-12 Score=94.85 Aligned_cols=131 Identities=21% Similarity=0.290 Sum_probs=93.8
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
+++.+++++.++.++++.|.+++.+++||+| +++++|+++..++............ ..+.... ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~---~~~~~~~-----------~~ 67 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRR---ARWLDLL-----------AG 67 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchh---hhHHHHh-----------cc
Confidence 5678899999999999999999999999999 5899999999999864321100000 0000000 00
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
... ...........++.++|. +++.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 68 ~~~-~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~ 133 (135)
T cd04586 68 AEE-LAAAFVRSHGRKVADVMT--RPVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLL 133 (135)
T ss_pred hHH-HHHHHHHhcCCCHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhh
Confidence 000 000000112345777776 678999999999999999999999999999999999999999986
No 122
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=2.7e-12 Score=92.29 Aligned_cols=120 Identities=29% Similarity=0.398 Sum_probs=91.2
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCC
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (259)
+++.++.++.++.++++.|.+.+...+||++ + |+++|+++..+++..+....... ... ...+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~--~~~----------~~~~---- 64 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFN--KIK----------TGNG---- 64 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhc--ccc----------cccc----
Confidence 3567889999999999999999999999998 4 89999999999986533210000 000 0000
Q ss_pred ChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
......++.+++. +++.++++++++.++++.|.+.+.+.+||++ +|+++|+||..|++
T Consensus 65 ----------~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~ 123 (125)
T cd04631 65 ----------LEAINEPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123 (125)
T ss_pred ----------chhhhcCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhh
Confidence 0011234556665 6699999999999999999999999999999 69999999999986
No 123
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.44 E-value=3.5e-12 Score=89.62 Aligned_cols=108 Identities=23% Similarity=0.286 Sum_probs=88.7
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
+++.+++++.++.++++.|.+.+..++||+++++++|+++..++........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~~---------------------------- 52 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVPAEGR---------------------------- 52 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHHhcCc----------------------------
Confidence 3577899999999999999988889999998899999999999976421100
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....++.++|. +++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 53 ----------~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 109 (111)
T cd04612 53 ----------EATVLVGDVMT--RDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109 (111)
T ss_pred ----------ccccCHHHhcc--CCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhh
Confidence 00012344454 6689999999999999999999999999999 69999999999986
No 124
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.44 E-value=3e-12 Score=91.49 Aligned_cols=118 Identities=27% Similarity=0.368 Sum_probs=91.7
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
++.+++++.++.++++.|.+.+...+||+++|+++|+++..++............ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~~~~~~~~~-----------------------~- 57 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLASPSKATTLD-----------------------I- 57 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhhhccccccc-----------------------c-
Confidence 5678999999999999999998999999999999999999999865221000000 0
Q ss_pred hHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
..........++.++|. +++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 58 ---~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~ 120 (122)
T cd04585 58 ---WELYYLLSKIKVSDIMT--RDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120 (122)
T ss_pred ---hhhhhhhcccCHHHhcc--CCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhh
Confidence 00000012344666775 5788999999999999999999999999999 69999999999986
No 125
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.43 E-value=4.6e-12 Score=88.99 Aligned_cols=107 Identities=20% Similarity=0.314 Sum_probs=88.9
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
+++.++.++.++.++++.|.+++++.+||+++++++|+++..++++.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~~~~----------------------------- 51 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAIARG----------------------------- 51 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhcc-----------------------------
Confidence 356788999999999999999999999999889999999999998642110
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....++.++|. ..+.+++++.++.++++.|.+.+.+.+||++ +|++.|+++..|++
T Consensus 52 ----------~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 108 (110)
T cd04588 52 ----------LELAKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDIL 108 (110)
T ss_pred ----------ccccCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhh
Confidence 00123445554 5688999999999999999999999999999 69999999999986
No 126
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.43 E-value=1.1e-12 Score=94.55 Aligned_cols=110 Identities=22% Similarity=0.331 Sum_probs=89.5
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
+++.+++++.++.++++.|.++++..+||+| +++++|+++..+++......
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~---------------------------- 53 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSG---------------------------- 53 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHh----------------------------
Confidence 4678899999999999999999999999998 58999999999998753321
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHc---------CCceEEEee-CCeeeEEeehHHHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL---------RLSSAVVTV-ENKPRGILTSKDILM 197 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~---------~~~~~~V~~-~g~~~Giit~~di~~ 197 (259)
......+++++|. +++.++.+++++.++.+++... +.+.+||++ +|+++|++|.+|+++
T Consensus 54 ---------~~~~~~~v~~im~--~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~ 122 (124)
T cd04608 54 ---------KVQPSDPVSKALY--KQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLS 122 (124)
T ss_pred ---------ccCCCCcHHHHhh--ccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhh
Confidence 0023456888887 7799999999999999865432 456677887 799999999999974
No 127
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.43 E-value=5.1e-13 Score=114.05 Aligned_cols=95 Identities=33% Similarity=0.456 Sum_probs=89.6
Q ss_pred CCCCCcCEEEEEcCCCeEEEEEehhHHHHHHHHhcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeC
Q 025005 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN 80 (259)
Q Consensus 1 m~~~~~~~~~v~~~~~~~~g~~t~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~ 80 (259)
|.+.|++++.+++.++...||+|.+|+.+..+..+.+. ..+|+++|+.++++++.++.+.+|+-.|.+++++++||.++
T Consensus 175 m~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~ 253 (610)
T COG2905 175 MKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-TQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED 253 (610)
T ss_pred HHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-ccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC
Confidence 67889999999999999999999999999888888776 89999999999999999999999999999999999999999
Q ss_pred CeEEEEEeHHHHHHHH
Q 025005 81 GEVIALLDIAKCLYDA 96 (259)
Q Consensus 81 ~~~vGvi~~~~i~~~~ 96 (259)
|+++|+++..||+...
T Consensus 254 gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 254 GQPLGILTLTDILRLF 269 (610)
T ss_pred CeeeEEeeHHHHHHhh
Confidence 9999999999999873
No 128
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.43 E-value=5.5e-12 Score=87.82 Aligned_cols=99 Identities=20% Similarity=0.177 Sum_probs=84.9
Q ss_pred eEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhH
Q 025005 52 TFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTF 131 (259)
Q Consensus 52 ~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (259)
++++++.++.++++.|.+.+...+||+++++++|+++..++....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~----------------------------------- 48 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT----------------------------------- 48 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc-----------------------------------
Confidence 467899999999999999999999999889999999999987520
Q ss_pred HHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 132 IETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 132 ~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
..++.++|. +.+.++.++.++.++++.|.+++.+.+||+++|+++|++|.+|++
T Consensus 49 ---------~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~iGvit~~dl~ 102 (104)
T cd04594 49 ---------YGDVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDDGKFKGIVTLDSIL 102 (104)
T ss_pred ---------ccchhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEECCEEEEEEEHHHhh
Confidence 012334454 557889999999999999999999999999999999999999986
No 129
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.7e-12 Score=93.38 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=94.4
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.++++++++.++++.|.+.+.+++||+| +++++|+++..++........... ...+......
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~---------------~~~~~~~~~~ 66 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLF---------------YVTLLYSVIF 66 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcc---------------cccccccccc
Confidence 567899999999999999988899999998 589999999999987532210000 0000000000
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
.. +.........++.++|. +++..+.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 67 ~~--~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~ 130 (132)
T cd04636 67 LD--ESKIKKLLGKKVEEIMT--KKVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDII 130 (132)
T ss_pred cc--hHHHHHHcCCCHHHhcc--CCceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhh
Confidence 00 11222233446778886 668899999999999999999999999999989999999999986
No 130
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.43 E-value=4e-12 Score=90.10 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=88.7
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++++.++.++.+.|.+.+...+||+| +|+++|+++..++........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---------------------------- 53 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE---------------------------- 53 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc----------------------------
Confidence 567889999999999999999999999998 599999999999986532100
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C--CeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--g~~~Giit~~di~ 196 (259)
.....++.++|. ..+.++.+++++.+++++|.+++...+||++ + |+++|++|.+|++
T Consensus 54 ---------~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~ 113 (115)
T cd04593 54 ---------AGEPSAVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVL 113 (115)
T ss_pred ---------ccccccHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhh
Confidence 001122445564 6688999999999999999999999999998 5 7999999999986
No 131
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=5.2e-12 Score=90.70 Aligned_cols=116 Identities=21% Similarity=0.164 Sum_probs=87.7
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
++.++.+++++.+|++.|.++++.++||+| + ++++|+++..|+++.............
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~-------------------- 61 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLD-------------------- 61 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchh--------------------
Confidence 567889999999999999988899999998 5 899999999999875432111000000
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di 195 (259)
... .......++|. +++.++.++.++.++++.|.+++.+.+||++ +|+++|++|.+|+
T Consensus 62 ------~~~--~~~~~~~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 62 ------PLY--PIPLRDLTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred ------hhh--hhhhhhcccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHh
Confidence 000 00011223444 6688999999999999999999999999998 7999999999998
No 132
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=8.4e-12 Score=89.36 Aligned_cols=118 Identities=28% Similarity=0.306 Sum_probs=90.5
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
++++++++.++.++++.|.++++..+||+|+|+++|+++..++.+..........+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~~~~~~~~~~~~~--------------------- 60 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAISPFLGTAGETEK--------------------- 60 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHHHHHhccccchHH---------------------
Confidence 56789999999999999999999999999999999999999998754321110000000
Q ss_pred hHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
. . .....++.++|. .++..+.+++++.++++.|.+.+...+||++ +|+++|+++..|++
T Consensus 61 ~----~--~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll 120 (122)
T cd04637 61 D----L--ATLNRRAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120 (122)
T ss_pred H----H--HHHHhHHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhh
Confidence 0 0 000112445554 5688999999999999999999999999998 79999999999986
No 133
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=5.6e-12 Score=90.11 Aligned_cols=119 Identities=24% Similarity=0.271 Sum_probs=92.6
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++++++.+++++.++.+.|.+++...+||+++|+++|+++..++............
T Consensus 1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~~~~~~~~~------------------------ 56 (121)
T cd04633 1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADALRSFRPLVR------------------------ 56 (121)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhhhhhhhccc------------------------
Confidence 35778999999999999999989999999999999999999999865321110000
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
...........++.++|. .++.++.+++++.++++.|.+.+.+.+||+++|+++|+++..|++
T Consensus 57 ---~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~ 119 (121)
T cd04633 57 ---DRHQERRIRNLPVSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDIL 119 (121)
T ss_pred ---chhhhhhhhccCHHHHcc--CCceEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhh
Confidence 000011122334566675 568899999999999999999999999999889999999999986
No 134
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2e-12 Score=91.21 Aligned_cols=93 Identities=34% Similarity=0.606 Sum_probs=79.4
Q ss_pred CCCCcCEEEEEcCCCeEEEEEehhHHHHHHHHhcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCC
Q 025005 2 AARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENG 81 (259)
Q Consensus 2 ~~~~~~~~~v~~~~~~~~g~~t~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~ 81 (259)
.+++...+||++++++++|+++..|+++.+..........++.++|..++.++.++.++.++++.|.+.+...+||++++
T Consensus 20 ~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~~ 99 (113)
T cd04623 20 AEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDGG 99 (113)
T ss_pred HHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeCC
Confidence 45678899999988899999999999865543322233568999998899999999999999999999999999999989
Q ss_pred eEEEEEeHHHHHH
Q 025005 82 EVIALLDIAKCLY 94 (259)
Q Consensus 82 ~~vGvi~~~~i~~ 94 (259)
+++|+++..+++.
T Consensus 100 ~~~Gvit~~di~~ 112 (113)
T cd04623 100 KLVGIVSIGDVVK 112 (113)
T ss_pred EEEEEEEHHHhhc
Confidence 9999999999864
No 135
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.42 E-value=2e-12 Score=116.38 Aligned_cols=124 Identities=12% Similarity=0.147 Sum_probs=102.8
Q ss_pred CCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 025005 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (259)
Q Consensus 37 ~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 115 (259)
.+...+++|+|.++..++++++++.++.+.|.+++.+.+||+| +++++|+++..|+.+......
T Consensus 443 ~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~--------------- 507 (574)
T PRK01862 443 RLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR--------------- 507 (574)
T ss_pred HHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc---------------
Confidence 3456789999999999999999999999999999999999999 589999999999986422100
Q ss_pred hcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C--CeeeEEeeh
Q 025005 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E--NKPRGILTS 192 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~--g~~~Giit~ 192 (259)
.....++.++|. +++.++++++++.++++.|.+++.+.+||+| + ++++|++|+
T Consensus 508 ----------------------~~~~~~v~dim~--~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~ 563 (574)
T PRK01862 508 ----------------------DTTDKTAADYAH--TPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYK 563 (574)
T ss_pred ----------------------ccccchHHHhcc--CCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEH
Confidence 001134566775 6688999999999999999999999999998 4 589999999
Q ss_pred HHHHHHH
Q 025005 193 KDILMRV 199 (259)
Q Consensus 193 ~di~~~~ 199 (259)
+|+++.+
T Consensus 564 ~DIl~~l 570 (574)
T PRK01862 564 TSLLDAY 570 (574)
T ss_pred HHHHHHH
Confidence 9998554
No 136
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.42 E-value=1.8e-12 Score=113.84 Aligned_cols=108 Identities=26% Similarity=0.291 Sum_probs=96.1
Q ss_pred cccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccC-CCCce
Q 025005 144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPEC 221 (259)
Q Consensus 144 v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~-~~~~~ 221 (259)
++++|. +++.+++++.++.++.+.|.+.+++.+||++ +|+++|++|.+|+.. . .....++.++|. +++.+
T Consensus 89 ~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~-~-----~~~~~~V~dim~~~~~v~ 160 (486)
T PRK05567 89 SESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF-E-----TDLSQPVSEVMTKERLVT 160 (486)
T ss_pred hhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh-c-----ccCCCcHHHHcCCCCCEE
Confidence 566776 7799999999999999999999999999999 899999999999852 1 112467899998 68899
Q ss_pred ecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 222 ATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++++++.++++.|.+++.+.+||+|++|+++|+||++
T Consensus 161 v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~ 198 (486)
T PRK05567 161 VPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVK 198 (486)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhH
Confidence 99999999999999999999999999999999999863
No 137
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=5.2e-12 Score=88.98 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=88.8
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++++.++.++.+.|.+++...+||++ +++++|+++..+++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG----------------------------- 52 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc-----------------------------
Confidence 567889999999999999998999999998 59999999999998653210
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
.....++.++|. .++.++.+++++.++++.|.+.+...+||++ +|++.|++|..|++
T Consensus 53 ---------~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~ 110 (112)
T cd04624 53 ---------IDLDTPVSEIMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLV 110 (112)
T ss_pred ---------CCCccCHHHhcc--CCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhc
Confidence 001223556665 5688999999999999999998889999999 79999999999986
No 138
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=5.3e-12 Score=88.16 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=87.3
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
+++++++.+.++.++++.|.+.+...+||+++++++|+++..+++..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~--------------------------------- 48 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK--------------------------------- 48 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc---------------------------------
Confidence 46788999999999999998888888999988999999999998742
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....++.++|. +.+.++.+++++.++++.|.+++...+||++ +|+++|+++..|++
T Consensus 49 ----------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~ 105 (107)
T cd04610 49 ----------DPDETVEEIMS--KDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVI 105 (107)
T ss_pred ----------CccccHHHhCC--CCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhh
Confidence 00123555564 5688899999999999999999989999999 89999999999986
No 139
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.41 E-value=7.8e-12 Score=87.55 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=88.3
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
+++.+++++.++.++++.|.+++...+||++ +++++|+++..++.....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~------------------------------ 51 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK------------------------------ 51 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh------------------------------
Confidence 4567889999999999999998999999998 589999999999876410
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
...++.++|. +.+.++++++++.++++.|.+.+...+||++ +|+++|++|.+|++
T Consensus 52 ------------~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~ 107 (109)
T cd04583 52 ------------EAKSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLV 107 (109)
T ss_pred ------------cCCcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhh
Confidence 0123555565 5688899999999999999999999999999 89999999999986
No 140
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.41 E-value=1.4e-12 Score=113.59 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=97.1
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHH-----cCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccc
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-----LRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE 212 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~-----~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~ 212 (259)
+...+++++|+ +++.+++++.++.++.+.|.+ .+...++|+| +|+++|+++.+|++. .. ...+++
T Consensus 128 ~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~-----a~--~~~~v~ 198 (449)
T TIGR00400 128 YSDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLIL-----AK--PEEILS 198 (449)
T ss_pred CCcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhc-----CC--CCCcHH
Confidence 35678899998 789999999999999999975 3456788888 899999999999862 11 235799
Q ss_pred cccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 213 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++|.+++.++++++++.+|++.|.+++...+||||++|+++|+||.+
T Consensus 199 ~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~ 245 (449)
T TIGR00400 199 SIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVD 245 (449)
T ss_pred HHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHH
Confidence 99998899999999999999999999999999999999999999963
No 141
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=2.3e-12 Score=91.90 Aligned_cols=107 Identities=19% Similarity=0.214 Sum_probs=86.4
Q ss_pred CeeEeCCCchHHHHHHHHHHcC-CceEEEeeCCeeeEEeehHHHHHHHHhc--CCCCcccccccccCCCCceecCCCCHH
Q 025005 153 KVVTISPTDTVLMATKKMLELR-LSSAVVTVENKPRGILTSKDILMRVISQ--NLPADSTLVEKVMTPNPECATIDTPIV 229 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~-~~~~~V~~~g~~~Giit~~di~~~~~~~--~~~~~~~~v~~~~~~~~~~v~~~~~l~ 229 (259)
++.++.+++++.++++.|...+ .+.+||+++|+++|+++..|+++.+... .......++.++|..++..+++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~ 81 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPLE 81 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCHH
Confidence 4667899999999999998776 7889999889999999999997433211 000123578899998899999999999
Q ss_pred HHHHHHHhCCCc---eeeeecCCCceeeEEecC
Q 025005 230 DALHIMHDGKFL---HLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 230 ~a~~~~~~~~~~---~l~Vvd~~~~~~Gvitr~ 259 (259)
++++.|.+++.. ..+||+++|+++|+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~ 114 (119)
T cd04598 82 EVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVK 114 (119)
T ss_pred HHHHHHHcCCcccccccEEEeeCCeEEEEEEHH
Confidence 999999998864 446888899999999963
No 142
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=3.8e-12 Score=91.86 Aligned_cols=121 Identities=20% Similarity=0.251 Sum_probs=88.1
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++++.++.+|++.|.+++...+||+| +|+++|+++..|+............ .+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~----------------------~~ 59 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLL----------------------YR 59 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhc----------------------cc
Confidence 567899999999999999999999999998 5899999999999875321100000 00
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
......... .-....+.+. +++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 60 ~~~~~~~~~--~~~~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil 124 (126)
T cd04642 60 TITFKELSE--KFTDSDGVKS--RPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDII 124 (126)
T ss_pred chhhhhhhh--hccccccccc--CCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHh
Confidence 000000000 0001112343 6688999999999999999999999999999 79999999999986
No 143
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=6.8e-12 Score=88.49 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=88.9
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
++.+++++.++.++.+.|.+++.+.+||+++|+++|+++..+++...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~~~~~~------~----------------------- 52 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVVRAVAE------G----------------------- 52 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHHHHhhc------c-----------------------
Confidence 56789999999999999999999999999999999999999986331110 0
Q ss_pred hHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
......++.++|. ..+.++.+++++.++++.|.+.+.+++||++ +|+++|+++..|++
T Consensus 53 -------~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~ 111 (113)
T cd04622 53 -------RDPDTTTVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111 (113)
T ss_pred -------CCcccCCHHHhcc--CCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhh
Confidence 0011123566665 5688899999999999999999999999998 69999999999986
No 144
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.40 E-value=8.5e-12 Score=109.16 Aligned_cols=156 Identities=10% Similarity=0.068 Sum_probs=112.5
Q ss_pred ccccccc---CCCeEEeCcchHHHHHHHHHhCCccEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 025005 42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (259)
Q Consensus 42 ~v~~~~~---~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~----~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (259)
.|+++|. ....+++++.++.+|++.|.++++..+||+|+ ++++|+++..|+....
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~------------------ 156 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR------------------ 156 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc------------------
Confidence 3555554 34568999999999999999999999999984 7999999999985310
Q ss_pred hhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehH
Q 025005 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 193 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~ 193 (259)
.....+++++|++.+++.++.++.++.+++++|.+++...+||+| +|+++|+||.+
T Consensus 157 -----------------------~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~ 213 (502)
T PRK07107 157 -----------------------MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRK 213 (502)
T ss_pred -----------------------cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhH
Confidence 022456888997545789999999999999999999999999999 89999999999
Q ss_pred HHHHHHHhcCCCCcccccccccCCC--CceecCCCCHHHHHHHHHhCCCceeee
Q 025005 194 DILMRVISQNLPADSTLVEKVMTPN--PECATIDTPIVDALHIMHDGKFLHLPV 245 (259)
Q Consensus 194 di~~~~~~~~~~~~~~~v~~~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~l~V 245 (259)
|+++.- .. .....+-..+- ...+...+ ..+-.+.+.+.+++.+.|
T Consensus 214 Dilk~~-~~-----P~a~~d~~grL~V~~av~~~~-~~~ra~~Lv~aGvd~i~v 260 (502)
T PRK07107 214 DYDSHK-EN-----PLELLDSSKRYVVGAGINTRD-YAERVPALVEAGADVLCI 260 (502)
T ss_pred HHHhcc-cC-----hhhhhhhccCeeeeeccChhh-HHHHHHHHHHhCCCeEee
Confidence 997422 11 11111111111 01222222 445566677778777654
No 145
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.9e-12 Score=89.27 Aligned_cols=111 Identities=16% Similarity=0.267 Sum_probs=87.4
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
+++++++++++.++++.|.+++.+.+||+| +++++|+++..++..........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~-------------------------- 55 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENL-------------------------- 55 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCch--------------------------
Confidence 567899999999999999999999999998 58999999999998753211000
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
.. ..+...++.++|. +.+.++.+++++.++++.|.+.+ .+||++ +|+++|++|..|++
T Consensus 56 -----~~-~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil 114 (116)
T cd04643 56 -----DL-ERLVDLKVIDVMN--TDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREIL 114 (116)
T ss_pred -----hH-HHHhCCcHHHHhc--CCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhh
Confidence 00 0012344666675 56889999999999999998764 589998 89999999999986
No 146
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=5e-12 Score=89.55 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=85.8
Q ss_pred CCeEEeCcchHHHHHHHHHhCC-ccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~-~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++++.++.++++.|.+++ ...+||.++|+++|+++..+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~~~~----------------------------- 52 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLTAIG----------------------------- 52 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHHhcC-----------------------------
Confidence 4668899999999999998877 6677777889999999999998642110
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCC--chHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPT--DTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~--~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
......++.++|. .++.++.++ +++.++++.|.+++...+||++ +|+++|++|.+|++
T Consensus 53 --------~~~~~~~i~~~~~--~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~ 113 (115)
T cd04620 53 --------KDLSDLPIGEVMT--QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIR 113 (115)
T ss_pred --------CCccccCHHHhcC--CCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhh
Confidence 0011234556665 557778776 6899999999999999999999 79999999999986
No 147
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.9e-12 Score=90.13 Aligned_cols=117 Identities=22% Similarity=0.339 Sum_probs=91.0
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeC-CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~-~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.++.++.++.++++.|.+.+++.+||+++ |+++|+++..++............ ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~------------------~~~--- 60 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNG------------------EES--- 60 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcccccccc------------------ccc---
Confidence 5678999999999999999999999999984 999999999999875321100000 000
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
.......++.+++. .++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|++
T Consensus 61 -------~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~ 120 (122)
T cd04803 61 -------LTKERDVPVAEVMK--TDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120 (122)
T ss_pred -------cccccCcCHHHhhC--CCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhh
Confidence 00112334566665 6688999999999999999999999999999 68999999999986
No 148
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.40 E-value=4.9e-12 Score=92.14 Aligned_cols=97 Identities=31% Similarity=0.333 Sum_probs=78.6
Q ss_pred CeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcc----------ccccccc------
Q 025005 153 KVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADS----------TLVEKVM------ 215 (259)
Q Consensus 153 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~----------~~v~~~~------ 215 (259)
++.++.+++++.++++.|...+...+||+| +|+++|++|..|+++.+......... ..+.++|
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 478899999999999999989999999999 79999999999998655433221100 1123344
Q ss_pred ---CCCCceecCCCCHHHHHHHHHhCCCceeeeecCC
Q 025005 216 ---TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRG 249 (259)
Q Consensus 216 ---~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~ 249 (259)
..++.++++++++.+|++.|.+++.+.+||+|++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 4578899999999999999999999999999855
No 149
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.40 E-value=6.6e-12 Score=88.58 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=89.3
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
++.++.++.++.++++.|.+++.+.+||+++++++|+++..+++...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~-------~---------------------- 52 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALRVVAQ-------G---------------------- 52 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHHHhc-------C----------------------
Confidence 56788999999999999998888999999889999999999997542210 0
Q ss_pred hHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
......++.++|. +.+.++.+++++.++++.|.+.+...+||++ +|+++|++|..|++
T Consensus 53 -------~~~~~~~v~~i~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~ 111 (113)
T cd04587 53 -------LDPESTLVERVMT--PNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLT 111 (113)
T ss_pred -------CCcCcCCHHHhcC--CCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhc
Confidence 0000134566665 5688899999999999999999999999999 79999999999985
No 150
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.40 E-value=5.8e-12 Score=88.92 Aligned_cols=108 Identities=21% Similarity=0.248 Sum_probs=89.3
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++++.++.++.+.|.+++...+||++ +++++|+++..++.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~----------------------------- 52 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDP----------------------------- 52 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcc-----------------------------
Confidence 567899999999999999998899999998 58999999999997642110
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeC--CeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE--NKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--g~~~Giit~~di~ 196 (259)
......++.++|. +++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++..|++
T Consensus 53 --------~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~ 112 (114)
T cd04613 53 --------SLYDLVVASDIMT--KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL 112 (114)
T ss_pred --------cccccEEHHHhcc--CCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence 0001134566675 66899999999999999999999999999986 8999999999986
No 151
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.40 E-value=8.9e-12 Score=87.64 Aligned_cols=105 Identities=16% Similarity=0.204 Sum_probs=86.2
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
++++++++.++.+|++.|.+.+...+||++ + ++++|+++..++.......
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~---------------------------- 53 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEG---------------------------- 53 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcC----------------------------
Confidence 467899999999999999998899999998 5 8999999999998752210
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....++..++ +++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 54 -----------~~~~~~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 109 (111)
T cd04590 54 -----------EEDLDLRDLL---RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109 (111)
T ss_pred -----------CCcCCHHHHh---cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhh
Confidence 0001233333 3477899999999999999999999999999 79999999999986
No 152
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.40 E-value=2e-11 Score=107.03 Aligned_cols=114 Identities=10% Similarity=0.149 Sum_probs=98.5
Q ss_pred cccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhc
Q 025005 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (259)
Q Consensus 42 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~----~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (259)
..++.|..++++++++.++.+++++|.+++++.+||+++ ++++|+++..|+... .
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~--~------------------- 155 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV--K------------------- 155 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc--c-------------------
Confidence 356778889999999999999999999999999999985 799999999998632 0
Q ss_pred ccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....+++++|++..+++++.++.++.+++++|.+++...+||+| +++++|+||.+|++
T Consensus 156 ---------------------~~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl 214 (495)
T PTZ00314 156 ---------------------DKSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLK 214 (495)
T ss_pred ---------------------cCCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhh
Confidence 11345778887323799999999999999999999999999999 89999999999997
Q ss_pred H
Q 025005 197 M 197 (259)
Q Consensus 197 ~ 197 (259)
+
T Consensus 215 ~ 215 (495)
T PTZ00314 215 K 215 (495)
T ss_pred h
Confidence 4
No 153
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.38 E-value=4.2e-12 Score=111.38 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=96.8
Q ss_pred HhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCccccccccc
Q 025005 137 ERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215 (259)
Q Consensus 137 ~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~ 215 (259)
..+...+++++|. +++.++.+++++.++++.|.+.+++.+||+| +|+++|+++..|+++.+.... .....++.++|
T Consensus 330 ~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-~~~~~~v~~im 406 (454)
T TIGR01137 330 DVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK-ANPDDAVSKVM 406 (454)
T ss_pred HHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC-CCcCCCHHHhc
Confidence 3356677889997 6799999999999999999988999999999 789999999999975444322 22345789999
Q ss_pred CCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
.+++.++++++++.+++++|.+++ .|||+++|+++|+||++
T Consensus 407 ~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~ 447 (454)
T TIGR01137 407 SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKI 447 (454)
T ss_pred CCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHH
Confidence 988899999999999999998864 35565589999999974
No 154
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.38 E-value=4.9e-12 Score=113.26 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=94.0
Q ss_pred ChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhc---
Q 025005 127 GPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ--- 202 (259)
Q Consensus 127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~--- 202 (259)
.+.+..+.........+++++|.+ +++.++++++++.++.+.|.+.+++.+||+| +|+++|++|.+|+++....+
T Consensus 231 t~~dt~~t~~~l~~~~~V~~iM~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iL 309 (546)
T PRK14869 231 TPYDTFTTARLINQSIPVSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVIL 309 (546)
T ss_pred ecccHHHHHHHhhcCCCHHHhccC-CCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEE
Confidence 344556666666778899999973 5699999999999999999999999999999 89999999999998432210
Q ss_pred -----------CCCC-------cccccccccCCCCcee---cCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEe
Q 025005 203 -----------NLPA-------DSTLVEKVMTPNPECA---TIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYS 257 (259)
Q Consensus 203 -----------~~~~-------~~~~v~~~~~~~~~~v---~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvit 257 (259)
+... .-.++++++..++..+ +...+..-+.++|.+.+....|++. ...+.|+++
T Consensus 310 VD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIls 384 (546)
T PRK14869 310 VDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILS 384 (546)
T ss_pred EcCccccccccchhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHH
Confidence 0000 0123445555555444 4466677888889999988888775 445666664
No 155
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.38 E-value=3.8e-11 Score=105.31 Aligned_cols=114 Identities=10% Similarity=0.070 Sum_probs=97.3
Q ss_pred cccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 025005 44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 119 (259)
Q Consensus 44 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~----~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (259)
+..|.++++++.++.++.+++++|.++++..+||+|+ ++++|+++..|+....
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~----------------------- 159 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN----------------------- 159 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-----------------------
Confidence 3447789999999999999999999999999999985 7999999999986420
Q ss_pred ccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHH
Q 025005 120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR 198 (259)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~ 198 (259)
....++.++|++...+.++.+++++.+++++|.+++...+||+| +++++|+||.+|+++.
T Consensus 160 -------------------~~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~ 220 (505)
T PLN02274 160 -------------------DRETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRV 220 (505)
T ss_pred -------------------ccCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence 12345778887433488999999999999999999999999999 8999999999999844
Q ss_pred H
Q 025005 199 V 199 (259)
Q Consensus 199 ~ 199 (259)
.
T Consensus 221 ~ 221 (505)
T PLN02274 221 K 221 (505)
T ss_pred h
Confidence 4
No 156
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=7.3e-12 Score=89.65 Aligned_cols=118 Identities=23% Similarity=0.389 Sum_probs=90.2
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
+++.+++++.++.++++.|.+.+.+.+||+| +|+++|+++..+++.........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~------------------------- 55 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSV------------------------- 55 (122)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccc-------------------------
Confidence 3567899999999999999988899999998 59999999999998641100000
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
... .........++.++|. +++..+.+++++.++++.|.+.+.+.+||++ +|++.|++|..|++
T Consensus 56 -~~~--~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~ 120 (122)
T cd04635 56 -EDQ--QRTQTKASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120 (122)
T ss_pred -cch--hhhhhhccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhh
Confidence 000 0000012334556665 6688999999999999999999999999999 79999999999986
No 157
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.8e-11 Score=88.42 Aligned_cols=121 Identities=30% Similarity=0.367 Sum_probs=90.3
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.++.++.++.+++++|.+.+.+.+||++ +++++|+++..++...+...........
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~--------------------- 60 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGD--------------------- 60 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhh---------------------
Confidence 567889999999999999999999999998 5999999999999864322100000000
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee---CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~g~~~Giit~~di~ 196 (259)
. ..........++.++|. .++.++.++.++.++++.|.+.+...+||++ +|+++|+||.+|++
T Consensus 61 --~-~~~~~~~~~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~ 126 (128)
T cd04632 61 --R-SGEKERMLDLPVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL 126 (128)
T ss_pred --h-hhhhhhhccCcHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence 0 00000112334667775 6688999999999999999999889999985 49999999999986
No 158
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=7e-12 Score=90.46 Aligned_cols=117 Identities=21% Similarity=0.251 Sum_probs=84.8
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.++.+++++.++++.|.+++...+||++ +|+++|+++..++.......... ..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~--~~---------------------- 57 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQ--EG---------------------- 57 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHH--Hc----------------------
Confidence 467889999999999999989999999998 58999999999988631100000 00
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEe----CCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTI----SPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILM 197 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v----~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~ 197 (259)
.......+++++|.+......+ .+++++.++++.|.+++.+.+||++ + |+++|++|..|+++
T Consensus 58 -------~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 58 -------GISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred -------CCCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 0001123355666521111223 3688999999999999999999999 5 79999999999863
No 159
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.37 E-value=2.1e-11 Score=103.24 Aligned_cols=171 Identities=22% Similarity=0.200 Sum_probs=126.2
Q ss_pred CCCCcCEEEEEc-CCCeEEEEEehhHHHHHHHHhcCCCC-----cccccccc---cCCCeEEeCcchHHHHHHHHHhCCc
Q 025005 2 AARRVDALLLTD-SNALLCGILTDKDIATRVIARELNLE-----ETPVSKVM---TRNPTFVLSDTLAVEALQKMVQGKF 72 (259)
Q Consensus 2 ~~~~~~~~~v~~-~~~~~~g~~t~~di~~~~~~~~~~~~-----~~~v~~~~---~~~~~~v~~~~~l~~a~~~~~~~~~ 72 (259)
.++|+..+||.| +.+.+..++|..-+++++-.....+. ..++.|.- -..+..+..++++.+|++.|.++++
T Consensus 181 ~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~i 260 (381)
T KOG1764|consen 181 IKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRI 260 (381)
T ss_pred HhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCc
Confidence 578999999998 45789999999999987765443332 23333332 2368899999999999999999999
Q ss_pred cEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCC
Q 025005 73 RHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK 151 (259)
Q Consensus 73 ~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 151 (259)
+.+||++ .|+.+|+++..|+.......--... .... +..... ....+.
T Consensus 261 s~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~----------------------~~~~----l~~~~~-----~~~~~~ 309 (381)
T KOG1764|consen 261 SALPVVDENGKKVGNYSRFDVIHLAREGTYNNL----------------------DLSC----LSEALS-----HRPIRF 309 (381)
T ss_pred CcceEEcCCCceecceehhhhhhhhhcCccCcc----------------------chhH----HHHHhh-----hccccc
Confidence 9999999 5888999999999876443100000 0000 000000 000001
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcC
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN 203 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~ 203 (259)
..+++|.++.++..++..|..++.++++|+| +|.++|++|..|++..+....
T Consensus 310 ~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p 362 (381)
T KOG1764|consen 310 EGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTP 362 (381)
T ss_pred CccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCc
Confidence 4489999999999999999999999999999 799999999999997776553
No 160
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=6.2e-12 Score=88.27 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=81.4
Q ss_pred EeCcchHHHHHHHHHhCC-----ccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 54 VLSDTLAVEALQKMVQGK-----FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 54 v~~~~~l~~a~~~~~~~~-----~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
++++.++.++++.|.+++ ...+||+| +++++|+++..+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~-------------------------------- 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA-------------------------------- 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC--------------------------------
Confidence 578899999999998776 46889998 5899999999888642
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~ 197 (259)
....++.+++. +++..+.+++++.++++.|.+.+...+||++ +|+++|++|..|+++
T Consensus 50 -----------~~~~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~ 107 (109)
T cd04606 50 -----------DPDTPVSDIMD--TDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVID 107 (109)
T ss_pred -----------CCcchHHHHhC--CCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhh
Confidence 00122445554 5688999999999999999999999999998 899999999999974
No 161
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.5e-11 Score=85.74 Aligned_cols=98 Identities=22% Similarity=0.292 Sum_probs=84.7
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
+.++..+.++.++++.|.+.+.+.+||++ +|++.|+++..+++. . . ...++.++|..++.++++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~-~--~----~~~~~~~~~~~~~~~v~~~~~l~~~~ 75 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLR-N--P----EEEQLALLMTRDPPTVSPDDDVKEAA 75 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHh-c--c----ccchHHHHhcCCCceECCCCCHHHHH
Confidence 67788999999999999988888999998 799999999999862 1 1 12356777888889999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.|.+++.+.+||+| +|+++|+||++
T Consensus 76 ~~~~~~~~~~~~Vvd-~~~~~G~it~~ 101 (106)
T cd04638 76 KLMVENNIRRVPVVD-DGKLVGIVTVA 101 (106)
T ss_pred HHHHHcCCCEEEEEE-CCEEEEEEEHH
Confidence 999999999999999 48999999963
No 162
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=2.3e-11 Score=89.77 Aligned_cols=138 Identities=18% Similarity=0.256 Sum_probs=94.2
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCC---
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI--- 125 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 125 (259)
++++++++++++.++++.|.++++..+||+++++++|+++..++...+........ .. ............
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~ 73 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLVTHDPSGN-----LW--LPSPLELIELPLREF 73 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHHhccCccc-----cc--cCCcceeeeccchhe
Confidence 35678999999999999999999999999988999999999999865432110000 00 000000000000
Q ss_pred CChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
...........+ ....++.++|. ..+.++++++++.++++.|.+.+.+.+||+++|+++|+++..|++
T Consensus 74 ~~~~~~~~~~~~-~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~ 141 (143)
T cd04634 74 INWEETKRALTD-AGKMKVRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDII 141 (143)
T ss_pred eehHHHHHHHHH-HhcCCHHHHcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 000001111111 12345667775 568999999999999999999999999999889999999999986
No 163
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.36 E-value=1.7e-11 Score=85.52 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=84.6
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCC
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 125 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~----~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (259)
....+.++.++.++...+.+.+...+||+++ |+++|+++..++......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 4567899999999999999988889999985 889999999998764110
Q ss_pred CChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
+|. +++.++++++++.++++.|.+.+.+.+||+++|+++|++|.+|++
T Consensus 56 ---------------------~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~~~~~Gvvt~~dl~ 103 (105)
T cd04591 56 ---------------------YID--PSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDEGRLVGIITRKDLL 103 (105)
T ss_pred ---------------------hcc--CCCceECCCCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEhhhhh
Confidence 343 568899999999999999999999999999999999999999986
No 164
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.34 E-value=2.7e-11 Score=86.50 Aligned_cols=117 Identities=26% Similarity=0.373 Sum_probs=89.8
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++++.++.+|++.|.+.+.+.+||+| +++++|+++..++........... ..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~--~~--------------------- 58 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTL--SE--------------------- 58 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccc--hh---------------------
Confidence 567889999999999999988889999998 599999999999875421110000 00
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
... ......++.++|. ..+.++.+++++.++++.|.+.+...+||+++|+++|+++..|++
T Consensus 59 ----~~~-~~~~~~~v~~~~~--~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~ 119 (121)
T cd04584 59 ----HEL-YLLLKMPVKEIMT--KDVITVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLL 119 (121)
T ss_pred ----hhh-hhhcCcCHHHHhh--CCCeEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhh
Confidence 000 0112334556665 568899999999999999999999999999889999999999986
No 165
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.34 E-value=2.5e-11 Score=85.88 Aligned_cols=103 Identities=16% Similarity=0.257 Sum_probs=83.8
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCC
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSI 125 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~----~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (259)
++.++.++.++.++++.|.+++...+||+|+ |+++|+++..++... .
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~--~--------------------------- 53 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL--T--------------------------- 53 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh--h---------------------------
Confidence 5678899999999999999888889999984 899999999887632 0
Q ss_pred CChhhHHHHHHHhhcCCCcccccCCCCCeeEe--CCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 126 SGPNTFIETLRERMFRPSLSTIIPEKSKVVTI--SPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v--~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....+++++|. ....++ ++++++.++++.|.+++...+||++ +|+++|++|.+|++
T Consensus 54 -------------~~~~~v~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~ 112 (114)
T cd04602 54 -------------DSETPLSEVMT--PREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112 (114)
T ss_pred -------------ccCCCHHHhcC--CCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhh
Confidence 00123556665 344555 4499999999999999999999998 79999999999986
No 166
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.34 E-value=1.5e-11 Score=107.02 Aligned_cols=115 Identities=20% Similarity=0.298 Sum_probs=98.2
Q ss_pred cccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhc
Q 025005 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (259)
Q Consensus 42 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~----~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (259)
+..+.|.+++++++++.++.+++++|.+++++.+||+|+ ++++|+++..|+....
T Consensus 81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~--------------------- 139 (450)
T TIGR01302 81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK--------------------- 139 (450)
T ss_pred cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------------------
Confidence 456778889999999999999999999999999999994 5999999999986420
Q ss_pred ccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....++.++|.+ +++.+++++.++.++++.|.+++.+.+||+| +|+++|++|..|++
T Consensus 140 ---------------------~~~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl 197 (450)
T TIGR01302 140 ---------------------DKGKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIV 197 (450)
T ss_pred ---------------------cCCCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhh
Confidence 012346677752 3799999999999999999999999999999 89999999999998
Q ss_pred HHH
Q 025005 197 MRV 199 (259)
Q Consensus 197 ~~~ 199 (259)
+..
T Consensus 198 ~~~ 200 (450)
T TIGR01302 198 KRR 200 (450)
T ss_pred hcc
Confidence 543
No 167
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.33 E-value=6e-11 Score=84.13 Aligned_cols=111 Identities=25% Similarity=0.337 Sum_probs=94.1
Q ss_pred ccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCC
Q 025005 45 KVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 124 (259)
Q Consensus 45 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (259)
++|.+.++++.++.++.+|...|.++++..+|+.+.++++|+++..|+.........
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~~~~----------------------- 59 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAAGGK----------------------- 59 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhccCC-----------------------
Confidence 345588999999999999999999999999999998899999999999987432100
Q ss_pred CCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHH-cCCceEEEee-CC-eeeEEeehHHH
Q 025005 125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE-LRLSSAVVTV-EN-KPRGILTSKDI 195 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~~~~~~V~~-~g-~~~Giit~~di 195 (259)
...++.++|. +++.++.++.++.++.+.|.+ .+.+.+||++ ++ +++|++|..|+
T Consensus 60 ---------------~~~~v~~v~~--~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 60 ---------------RLLPVKEVMT--KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred ---------------ccccHHHhcc--CCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 0004666776 578999999999999999999 6999999999 64 99999999997
No 168
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.33 E-value=1.1e-11 Score=87.46 Aligned_cols=91 Identities=36% Similarity=0.565 Sum_probs=79.1
Q ss_pred CCCcCEEEEEcCCCeEEEEEehhHHHHHHHHhcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CC
Q 025005 3 ARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NG 81 (259)
Q Consensus 3 ~~~~~~~~v~~~~~~~~g~~t~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~ 81 (259)
+++.+.+||++++++++|+++..++.+.+ .....+...++.++|..+..++.+++++.++++.|.+++...+||++ ++
T Consensus 22 ~~~~~~~~v~d~~~~~~G~v~~~~i~~~~-~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~ 100 (114)
T cd04604 22 RKGLGMTAVVDEDGRLVGIFTDGDLRRAL-EKGLDILTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNG 100 (114)
T ss_pred hcCccEEEEEcCCCCEEEEechHHHHHHH-hccCccccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC
Confidence 45678899999889999999999997544 44445555689999999999999999999999999999999999998 79
Q ss_pred eEEEEEeHHHHHH
Q 025005 82 EVIALLDIAKCLY 94 (259)
Q Consensus 82 ~~vGvi~~~~i~~ 94 (259)
+++|+++..+++.
T Consensus 101 ~~iG~it~~di~~ 113 (114)
T cd04604 101 RPVGVLHIHDLLR 113 (114)
T ss_pred CEEEEEEHHHhhc
Confidence 9999999999874
No 169
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.32 E-value=2e-11 Score=85.64 Aligned_cols=104 Identities=23% Similarity=0.359 Sum_probs=84.8
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCC
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISG 127 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (259)
+++.+++.+.++.++++.|.+++...+||+| +|+++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~------------------------------- 50 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET------------------------------- 50 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc-------------------------------
Confidence 4677899999999999999988899999998 58999999998875320
Q ss_pred hhhHHHHHHHhhcCCCcccccCCCCCeeEeCC-CchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 128 PNTFIETLRERMFRPSLSTIIPEKSKVVTISP-TDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~-~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....++.++|. ..+..+.. ++++.++++.|.+.+.+.+||++ +|+++|++|.+|++
T Consensus 51 -----------~~~~~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil 108 (110)
T cd04601 51 -----------DLDKPVSEVMT--PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIE 108 (110)
T ss_pred -----------cCCCCHHHhcc--cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhh
Confidence 01123455664 34555566 99999999999999999999999 79999999999986
No 170
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.32 E-value=1.3e-11 Score=100.84 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=94.3
Q ss_pred ccccccccCC-CeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 025005 41 TPVSKVMTRN-PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (259)
Q Consensus 41 ~~v~~~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (259)
.+++++|.++ +.++++++++.++++.|.+.+...+||+| +|+++|+++..++......
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-------------------- 214 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-------------------- 214 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc--------------------
Confidence 6789999888 99999999999999999988899999998 6999999999999764110
Q ss_pred cccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEee
Q 025005 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT 191 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit 191 (259)
......+++++|. +++.++.+++++.++++.|.+.+...+||++ +|+++|+|+
T Consensus 215 ------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 215 ------------------GGSLKSEVRDFMT--LGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ------------------CCcccCcHHHhCC--CCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 0012345777786 6688999999999999999999999999999 789999984
No 171
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.31 E-value=3e-11 Score=106.05 Aligned_cols=120 Identities=24% Similarity=0.324 Sum_probs=97.3
Q ss_pred CCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 38 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
++..++.++|.+++.++.+++++.++++.|.++++..+||+| +++++|+++..++...+...
T Consensus 332 l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------- 394 (454)
T TIGR01137 332 LKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAG----------------- 394 (454)
T ss_pred hccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhcc-----------------
Confidence 557889999999999999999999999999999999999998 58999999999998753210
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
......++.++|. +++.++++++++.++++.|.+.+ ..+|+++|+++|+||.+|++
T Consensus 395 --------------------~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~~~~~~--~~vV~~~g~liGvvt~~dll 450 (454)
T TIGR01137 395 --------------------KANPDDAVSKVMS--KKFIQIGEGEKLSDLSKFLEKNS--SAIVTEEGKPIGVVTKIDLL 450 (454)
T ss_pred --------------------CCCcCCCHHHhcC--CCCeEECCcCcHHHHHHHHHHCC--eeEEEECCEEEEEEEHHHHH
Confidence 0011234667776 66889999999999999998754 34555589999999999998
Q ss_pred HH
Q 025005 197 MR 198 (259)
Q Consensus 197 ~~ 198 (259)
+.
T Consensus 451 ~~ 452 (454)
T TIGR01137 451 SF 452 (454)
T ss_pred Hh
Confidence 54
No 172
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=5.7e-11 Score=82.85 Aligned_cols=102 Identities=26% Similarity=0.353 Sum_probs=84.5
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.++.++.++.+++..|.+.+...+||++ +++++|+++..++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~-------------------------------- 49 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP-------------------------------- 49 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc--------------------------------
Confidence 467889999999999999988889999998 58999999999987420
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
...++.++|. .++.++.+++++.++++.|.+.+.+.+||+++|+++|++|..|++
T Consensus 50 -----------~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~~~~G~it~~d~~ 104 (106)
T cd04638 50 -----------EEEQLALLMT--RDPPTVSPDDDVKEAAKLMVENNIRRVPVVDDGKLVGIVTVADIV 104 (106)
T ss_pred -----------ccchHHHHhc--CCCceECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhh
Confidence 0011333443 568889999999999999999999999999988999999999986
No 173
>PRK11573 hypothetical protein; Provisional
Probab=99.31 E-value=2.8e-11 Score=104.10 Aligned_cols=118 Identities=11% Similarity=0.032 Sum_probs=99.3
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee--CCeeeEEeehHHHHHHHHhcCCCCcccccccccC
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+...+++++|.+..+++.++.+.++.++.+.+.+.+++++||++ -+.++|++..+|++..... +......++.+++.
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~-~~~~~~~~l~~~~r 262 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE-KKEFTKENMLRAAD 262 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc-cCcCCHHHHHhhcc
Confidence 46888999999989999999999999999999999999999998 4789999999999843322 22111123334444
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++.++++++++.++++.|.+++.+-+.|+|+.|...|+||-
T Consensus 263 -~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTl 303 (413)
T PRK11573 263 -EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTV 303 (413)
T ss_pred -CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeH
Confidence 67899999999999999999999999999999999999984
No 174
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.31 E-value=4.3e-11 Score=83.87 Aligned_cols=106 Identities=24% Similarity=0.314 Sum_probs=84.3
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPN 129 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (259)
++.+++++.++.++.+.|.+++.+.+||+++++++|+++..++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~~~~~~---------------------------- 53 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDALIEGKA---------------------------- 53 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHHhcccc----------------------------
Confidence 4678899999999999999999999999988999999999999875321100
Q ss_pred hHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 130 TFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....++.++|. +++.++++++++.++.+.|.+ .. .+||++ +|+++|++|.+|++
T Consensus 54 ---------~~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~ 108 (110)
T cd04609 54 ---------KFSLPVREVMG--EPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLL 108 (110)
T ss_pred ---------ccCcCHHHHhc--CCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhh
Confidence 00123445564 568889999999999999988 33 367777 89999999999986
No 175
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.29 E-value=6.5e-11 Score=96.66 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=125.7
Q ss_pred hcCCCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHhhhhHH
Q 025005 34 RELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKA 109 (259)
Q Consensus 34 ~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~--~~~vGvi~~~~i~~~~~~~~~~~~~~~~~ 109 (259)
.-.++++.+|.|+|.+ .+..++.+++..+.++-+....+.++|++.+ ++++|++...++++.+.+...
T Consensus 193 gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-------- 264 (423)
T COG4536 193 GVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-------- 264 (423)
T ss_pred cccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc--------
Confidence 4458999999999975 6888999999999999999999999999973 789999999999988654210
Q ss_pred HHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeE
Q 025005 110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG 188 (259)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~G 188 (259)
+.+ .++++-...++.+++++++.+-+..|.+++-+...|+| .|.+.|
T Consensus 265 -----------------------------~~k---~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~G 312 (423)
T COG4536 265 -----------------------------FTK---EDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQG 312 (423)
T ss_pred -----------------------------ccH---hHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEe
Confidence 000 01111115699999999999999999999888999999 999999
Q ss_pred EeehHHHHHHHHhcCCCCcccccccccCC--CCceecCCCCHHHHHHHH
Q 025005 189 ILTSKDILMRVISQNLPADSTLVEKVMTP--NPECATIDTPIVDALHIM 235 (259)
Q Consensus 189 iit~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~ 235 (259)
++|..|+++.++..-.+.......++..+ ..+.++.+.++.+..+.|
T Consensus 313 LVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~iRdlNr~l 361 (423)
T COG4536 313 LVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVRDLNRAL 361 (423)
T ss_pred eeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcHHHHHHhc
Confidence 99999999999886554444455555442 346677777777765554
No 176
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=9.9e-11 Score=83.34 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=86.3
Q ss_pred CCeEEeCcchHHHHHHHHHhCC-ccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGK-FRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~-~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.++++++++.++++.|.+.+ +..+||+++|+++|+++..++.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~~~~~~--------------------------- 54 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELLSTPYG--------------------------- 54 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHHhchhh---------------------------
Confidence 4567899999999999998876 889999988999999999999764221100
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCc---eEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLS---SAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~---~~~V~~-~g~~~Giit~~di~ 196 (259)
.......++.++|. .++.++.+++++.++++.|.+.+.. ..+|++ +|+++|++|..|++
T Consensus 55 -------~~~~~~~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~ 117 (119)
T cd04598 55 -------RALYGKKPVSEVMD--PDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLL 117 (119)
T ss_pred -------HHHHcCCcHHHhcC--CCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHh
Confidence 00112334667776 6788999999999999999887753 345666 89999999999986
No 177
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.27 E-value=1.8e-10 Score=80.58 Aligned_cols=108 Identities=27% Similarity=0.339 Sum_probs=87.5
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeC-CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~-~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.+++.+.++.++++.|.+++...+||+++ ++++|+++..+++.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-------------------------- 55 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD-------------------------- 55 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC--------------------------
Confidence 5678899999999999999988999999984 8999999999998763321100
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....+.++|. .++..+.++.++.++++.|.+.+.+.+||++ +|+++|+++.+|++
T Consensus 56 -----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~ 111 (113)
T cd02205 56 -----------PLVTVGDVMT--RDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111 (113)
T ss_pred -----------ccccHHHHhc--CCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhh
Confidence 0000234454 5688899999999999999999999999999 79999999999986
No 178
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.20 E-value=2.4e-10 Score=99.21 Aligned_cols=116 Identities=18% Similarity=0.138 Sum_probs=99.9
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee--CCeeeEEeehHHHHHHHHhcCCCCcccccccccC
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+...+++++|+++.++..++.+.++.++.+.+.+.+++++||++ .+.++|++..+|++........ . ......+.
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~--~~~~~~~~ 279 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D--LDLRVLVR 279 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c--cchhhccc
Confidence 46888999999989999999999999999999999999999999 6789999999999965655432 1 11112222
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++.++++++++.++++.|++.+.+-..|+||.|.+.|+||-
T Consensus 280 -~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTl 320 (429)
T COG1253 280 -PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTL 320 (429)
T ss_pred -CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEH
Confidence 78999999999999999999999999999999999999984
No 179
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.13 E-value=3e-10 Score=97.49 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=97.2
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHc-----CCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccc
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE 212 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~ 212 (259)
+...++..+|+ ..++++.++.|+.+++..+++. ....+.|+| +++++|+++.++++. . .....++
T Consensus 129 y~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~-----a--~~~~~i~ 199 (451)
T COG2239 129 YPEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLT-----A--EPDELLK 199 (451)
T ss_pred CChhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhc-----C--CcHhHHH
Confidence 34667788888 7899999999999999999854 346789999 889999999999861 1 1247899
Q ss_pred cccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 213 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++|.+++.++.+++..+++.+.|.+++.-.+||||++++++|+||-
T Consensus 200 ~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~iti 245 (451)
T COG2239 200 DLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITI 245 (451)
T ss_pred HHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeH
Confidence 9999999999999999999999999999999999999999999983
No 180
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.12 E-value=4.6e-10 Score=96.37 Aligned_cols=125 Identities=20% Similarity=0.265 Sum_probs=106.4
Q ss_pred HHHHhcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhC-----CccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHH
Q 025005 30 RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERA 103 (259)
Q Consensus 30 ~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~-----~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~ 103 (259)
..+.....|++-+++.+|+.+++++.++.++.+++..+++. .+..++|+| +++++|+++..+++..
T Consensus 121 ~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a-------- 192 (451)
T COG2239 121 ARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA-------- 192 (451)
T ss_pred HHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC--------
Confidence 33445668999999999999999999999999999999853 367888999 6889999999999854
Q ss_pred hhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-
Q 025005 104 AEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV- 182 (259)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~- 182 (259)
-...++.++|. +.++++.+++.-.+++++|.+++.-.+||+|
T Consensus 193 -----------------------------------~~~~~i~~im~--~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~ 235 (451)
T COG2239 193 -----------------------------------EPDELLKDLME--DDVVSVLADDDQEEVARLFEKYDLLAVPVVDE 235 (451)
T ss_pred -----------------------------------CcHhHHHHHhc--ccceeecccCCHHHHHHHHHHhCCeecceECC
Confidence 11223567776 5699999999999999999999999999999
Q ss_pred CCeeeEEeehHHHHHHH
Q 025005 183 ENKPRGILTSKDILMRV 199 (259)
Q Consensus 183 ~g~~~Giit~~di~~~~ 199 (259)
+++++|++|..|++.-+
T Consensus 236 ~~~LiG~itiDDiidvi 252 (451)
T COG2239 236 DNRLIGIITIDDIIDVI 252 (451)
T ss_pred CCceeeeeeHHHHHHHH
Confidence 89999999999998444
No 181
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.06 E-value=7.4e-10 Score=68.10 Aligned_cols=54 Identities=30% Similarity=0.453 Sum_probs=50.8
Q ss_pred ccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHH
Q 025005 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDA 96 (259)
Q Consensus 43 v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~ 96 (259)
|+++|.++++++++++++.++++.|.+++++++||+| +|+++|+++..++++.+
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 5789999999999999999999999999999999997 79999999999999864
No 182
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.04 E-value=3.4e-09 Score=77.14 Aligned_cols=114 Identities=15% Similarity=0.028 Sum_probs=76.8
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCCh
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGP 128 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (259)
++.++.++.++.+|++.|.+++...+||+| +|+++|+++..|++........... ... ...++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~-~~~---------~~~~~~~~--- 68 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRV-QPE---------DETKQTNT--- 68 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhcccccc-ccc---------hhhccccc---
Confidence 567899999999999999999999999999 5999999999999886432100000 000 00000000
Q ss_pred hhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee
Q 025005 129 NTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV 182 (259)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~ 182 (259)
....+......+.+.|. +++.++.+++++.++++.|.+++.+.+||++
T Consensus 69 ----~~v~~i~~~~~~~~~~~--~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd 116 (133)
T cd04592 69 ----CLVSSVCTKGISYGGQE--CGLWTCTPDTDLTTAKKLMEAKGVKQLPVVK 116 (133)
T ss_pred ----ccHHHHhhhhhhhcccC--CCCEEECCCCCHHHHHHHHHHcCCCcCCEec
Confidence 00001111111222333 5688999999999999999999999999998
No 183
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.04 E-value=7.3e-10 Score=90.65 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=99.4
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee--CCeeeEEeehHHHHHHHHhcCCCCcccccccccCC
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 217 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~ 217 (259)
.+.+|.|+|.+...+..+..+++..++.+.+....+.++|+.. -+.++|++-.+|+++.+.+.+. ....+...++ .
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-~~k~d~~~~a-~ 275 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-FTKEDILRAA-D 275 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-ccHhHHHHHh-c
Confidence 5778999999888999999999999999999999999999998 3569999999999855554443 3333333333 3
Q ss_pred CCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.|+++++++++.+.+..|.+++.+...||||.|.+.|+||-
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTL 316 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTL 316 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeH
Confidence 68999999999999999999999999999999999999983
No 184
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.04 E-value=5.3e-10 Score=92.21 Aligned_cols=102 Identities=32% Similarity=0.333 Sum_probs=92.1
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEee----CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCC
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP 227 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 227 (259)
.+++.++|+.++.++++....+++..+|+++ +++++|+||.+|+- ++ ......+.++|.+++++.+.+.+
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~-f~-----~~~~~~~~~vmt~~~~~~~~gi~ 189 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQ-FL-----EDNSLLVSDVMTKNPVTGAQGIT 189 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhh-hh-----hcccchhhhhccccccccccccc
Confidence 4688899999999999999999999999997 57899999999993 44 22357899999999999999999
Q ss_pred HHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 228 IVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 228 l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.++.+++.+++...|||||++|.++.+|+|.
T Consensus 190 l~~~neiL~~~kkGkl~iv~~~gelva~~~rt 221 (503)
T KOG2550|consen 190 LKEANEILKKIKKGKLPVVDDKGELVAMLSRT 221 (503)
T ss_pred HHHHHHHHHhhhcCCcceeccCCceeeeeehh
Confidence 99999999999999999999999999999984
No 185
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.01 E-value=2.6e-08 Score=84.36 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=83.1
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHH
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDAL 232 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~ 232 (259)
.....++.+..++++.|...+.....|++ ++++.|.++..++. ...... .++.+.+.....++++++++.+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 325 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIK-QARKKA-----QGLQDVLIDDIYTVDAGTLLRETV 325 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHH-HHhhcC-----CchhhhhccCCceECCCCcHHHHH
Confidence 34456677889999999988888899999 89999999999985 333322 346677777788999999999999
Q ss_pred HHHHhCCCceeeeecCCCceeeEEecC
Q 025005 233 HIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 233 ~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
..|.+++.. +||+|++|+++|+||+.
T Consensus 326 ~~~~~~~~~-~~v~~~~~~~~g~i~~~ 351 (363)
T TIGR01186 326 RKVLKAGIK-VPVVDEDQRLVGIVTRG 351 (363)
T ss_pred HHHHhCCCC-EEEECCCCcEEEEEEHH
Confidence 999999998 99999999999999973
No 186
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.99 E-value=1.1e-09 Score=84.17 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=118.3
Q ss_pred CCCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHH
Q 025005 36 LNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIA 111 (259)
Q Consensus 36 ~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d--~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~ 111 (259)
.++++++|+|+|.+ +.++++.+.++.+.+..+.+..++++||+. ++.+.|++-.+|++..+....
T Consensus 62 m~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~----------- 130 (293)
T COG4535 62 MDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA----------- 130 (293)
T ss_pred HHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc-----------
Confidence 36778999999964 789999999999999999999999999997 488999999999998632110
Q ss_pred HHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEe
Q 025005 112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL 190 (259)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Gii 190 (259)
..-.+.+++ ++.+.++++-.+...++.|+..+.+.++|+| .|-+.|++
T Consensus 131 ----------------------------~~F~i~~lL---RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLV 179 (293)
T COG4535 131 ----------------------------EPFDIKELL---RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLV 179 (293)
T ss_pred ----------------------------ccccHHHhc---ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeE
Confidence 001123333 6688999999999999999999999999999 88899999
Q ss_pred ehHHHHHHHHhcCCCCc----ccccccccCCCCceecCCCCHHHHHHHHH
Q 025005 191 TSKDILMRVISQNLPAD----STLVEKVMTPNPECATIDTPIVDALHIMH 236 (259)
Q Consensus 191 t~~di~~~~~~~~~~~~----~~~v~~~~~~~~~~v~~~~~l~~a~~~~~ 236 (259)
|..|+++.+.+.-.+.. ...+.. .++..+.+..=+++.+-.+.|-
T Consensus 180 TIEDiLEqIVGdIEDE~Deee~~dI~~-ls~~~~~VrALT~IedFNe~F~ 228 (293)
T COG4535 180 TIEDILEQIVGDIEDEYDEEEDADIRQ-LSRHTWRVRALTEIEDFNEAFG 228 (293)
T ss_pred EHHHHHHHHhcccccccchhhhhhhHh-hcCCceEEEecccHHHHHHHhc
Confidence 99999988876533221 111111 1234456666666665555543
No 187
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.95 E-value=2.3e-09 Score=65.88 Aligned_cols=53 Identities=26% Similarity=0.357 Sum_probs=48.4
Q ss_pred ccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHH
Q 025005 145 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (259)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~ 199 (259)
+++|. +++.++++++++.++++.|.+++++++||+| +|+++|++|.+|+++.+
T Consensus 2 ~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 2 GDIMT--PPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHSB--SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred eECCc--CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 45676 6899999999999999999999999999998 99999999999998654
No 188
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.87 E-value=4.9e-09 Score=90.90 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=110.7
Q ss_pred CCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeC------CeEEEEEeHHHHHHHHHHHHHHHhhhhHHH
Q 025005 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN------GEVIALLDIAKCLYDAIARMERAAEKGKAI 110 (259)
Q Consensus 37 ~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~------~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~ 110 (259)
...+++++|+|.+++++++.-+.+....+++..+.++.+||+|+ +++.|+|-+++++..+.++...........
T Consensus 578 ~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~ 657 (762)
T KOG0474|consen 578 YMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFD 657 (762)
T ss_pred HhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccC
Confidence 34577899999999999999999999999999999999999982 478899999888877655432211111111
Q ss_pred HHHhhh-cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeE
Q 025005 111 AAAVEG-VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG 188 (259)
Q Consensus 111 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~G 188 (259)
...... -...+..+.+...+..-+..+......++.+|. +.+.++.+++++..+..+|+..+.+++.|++ ....+|
T Consensus 658 ~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n--~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~g 735 (762)
T KOG0474|consen 658 LPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMN--PSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVG 735 (762)
T ss_pred cchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccC--CCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeE
Confidence 111100 000011111111111111222233556788886 7899999999999999999999999999999 667799
Q ss_pred EeehHHHH
Q 025005 189 ILTSKDIL 196 (259)
Q Consensus 189 iit~~di~ 196 (259)
++|++|+.
T Consensus 736 ilTR~D~~ 743 (762)
T KOG0474|consen 736 ILTRKDLA 743 (762)
T ss_pred EEehhhhh
Confidence 99999997
No 189
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.72 E-value=1e-06 Score=74.75 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=104.2
Q ss_pred cCEEEEEcCCCeEEEEEehhHHHHH--------HHHhcCCCCccccccc---ccCCCeEEeCcchHHHHHHHHHhCCccE
Q 025005 6 VDALLLTDSNALLCGILTDKDIATR--------VIARELNLEETPVSKV---MTRNPTFVLSDTLAVEALQKMVQGKFRH 74 (259)
Q Consensus 6 ~~~~~v~~~~~~~~g~~t~~di~~~--------~~~~~~~~~~~~v~~~---~~~~~~~v~~~~~l~~a~~~~~~~~~~~ 74 (259)
+..+.+++ +|+++..-+..+++.. ++............++ +........++.+..++++.|...+...
T Consensus 197 ~drI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (363)
T TIGR01186 197 GDRIVIMK-AGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRMNTGPITKTADKGPRSALQLMRDERVDS 275 (363)
T ss_pred CCEEEEEe-CCEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhhhccccceeecCCCCHHHHHHHHHhcCCce
Confidence 34555665 5788888887777532 1111101111222222 3333445666778999999999988989
Q ss_pred eeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCC
Q 025005 75 LPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSK 153 (259)
Q Consensus 75 ~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 153 (259)
+.++| ++++.|.++..++..+.-. ...+.+.+. ..
T Consensus 276 ~~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------~~~~~~~~~--~~ 311 (363)
T TIGR01186 276 LYVVDRQNKLVGVVDVESIKQARKK------------------------------------------AQGLQDVLI--DD 311 (363)
T ss_pred EEEEcCCCCEEEEEeHHHHHHHhhc------------------------------------------CCchhhhhc--cC
Confidence 99998 6899999998887654110 111333343 55
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHH
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 200 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~ 200 (259)
+.++++++++.+++..|.+.+.. +||+| +|+++|+||..+++..+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 312 IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred CceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 77899999999999999999988 99999 999999999999985553
No 190
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.71 E-value=1.2e-06 Score=75.27 Aligned_cols=151 Identities=11% Similarity=0.072 Sum_probs=104.3
Q ss_pred CEEEEEcCCCeEEEEEehhHHHHH--------HHHhcCCCCcccccccccCCC---eEEeCcchHHHHHHHHHhCCccEe
Q 025005 7 DALLLTDSNALLCGILTDKDIATR--------VIARELNLEETPVSKVMTRNP---TFVLSDTLAVEALQKMVQGKFRHL 75 (259)
Q Consensus 7 ~~~~v~~~~~~~~g~~t~~di~~~--------~~~~~~~~~~~~v~~~~~~~~---~~v~~~~~l~~a~~~~~~~~~~~~ 75 (259)
..+.+++ +|+++..-+..++... ++.......-.++.++|.+.. +...++.+..+++..|...+...+
T Consensus 233 Dri~vL~-~G~i~~~g~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (400)
T PRK10070 233 DRIAIMQ-NGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYG 311 (400)
T ss_pred CEEEEEE-CCEEEecCCHHHHHhCcccHHHHHHHhccccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceE
Confidence 4455555 4677665566665421 111111111245677775432 233466789999999999999999
Q ss_pred eEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCe
Q 025005 76 PVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKV 154 (259)
Q Consensus 76 pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 154 (259)
+|+| +++++|+++..++...... ...+.+.+. ...
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------~~~~~~~~~--~~~ 347 (400)
T PRK10070 312 YVIERGNKFVGAVSIDSLKTALTQ------------------------------------------QQGLDAALI--DAP 347 (400)
T ss_pred EEEcCCCcEEEEEeHHHHHhhhhc------------------------------------------CCchhhhhc--cCC
Confidence 9998 6999999999998654110 112333332 557
Q ss_pred eEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcC
Q 025005 155 VTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN 203 (259)
Q Consensus 155 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~ 203 (259)
.++.+++++.+++..+.+.... +||+| +|+++|+||..++++.+...+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDREG 396 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhcC
Confidence 8899999999999999987766 99999 999999999999996665444
No 191
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.69 E-value=1.5e-07 Score=80.74 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=80.4
Q ss_pred eCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHHHHH
Q 025005 157 ISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIM 235 (259)
Q Consensus 157 v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~ 235 (259)
..++.+..+++..|...+...++|+| ++++.|+++..++. .....+ .++.+.+.....++.+++++.+++..+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLK-TALTQQ-----QGLDAALIDAPLAVDAQTPLSELLSHV 363 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHH-hhhhcC-----CchhhhhccCCceeCCCCCHHHHHHHH
Confidence 34666889999999999999999999 99999999999985 333221 246666777788999999999999999
Q ss_pred HhCCCceeeeecCCCceeeEEec
Q 025005 236 HDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 236 ~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
..+... +||||++|+++|+|++
T Consensus 364 ~~~~~~-~~v~~~~~~~~g~~~~ 385 (400)
T PRK10070 364 GQAPCA-VPVVDEDQQYVGIISK 385 (400)
T ss_pred HhCCCc-EEEECCCCcEEEEEEH
Confidence 998766 9999999999999997
No 192
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.65 E-value=4.7e-08 Score=84.98 Aligned_cols=117 Identities=12% Similarity=0.196 Sum_probs=97.8
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee---C---CeeeEEeehHHHHHHHHhcCCCC-------
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---E---NKPRGILTSKDILMRVISQNLPA------- 206 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~---g~~~Giit~~di~~~~~~~~~~~------- 206 (259)
.+..++++|. ++++++...+.+..+.+.+....++.+||+| . +++.|+|-++.++ .++.++...
T Consensus 580 r~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~-vlL~~~~f~~~~~~~~ 656 (762)
T KOG0474|consen 580 RNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLL-VLLKKRVFVEESRSTF 656 (762)
T ss_pred hhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHH-HHHHhhhhhccCcccc
Confidence 3455788887 7899999999999999999999999999999 2 4788999998887 444321000
Q ss_pred -------------------------------cccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeE
Q 025005 207 -------------------------------DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITC 255 (259)
Q Consensus 207 -------------------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gv 255 (259)
...++..+|++.|+++++++++..+...|+.-+.|++.||++.++++|+
T Consensus 657 ~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gi 736 (762)
T KOG0474|consen 657 DLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGI 736 (762)
T ss_pred CcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEE
Confidence 0266677888889999999999999999999999999999999999999
Q ss_pred EecC
Q 025005 256 YSKK 259 (259)
Q Consensus 256 itr~ 259 (259)
+||+
T Consensus 737 lTR~ 740 (762)
T KOG0474|consen 737 LTRK 740 (762)
T ss_pred Eehh
Confidence 9985
No 193
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.62 E-value=6e-08 Score=74.70 Aligned_cols=115 Identities=15% Similarity=0.093 Sum_probs=98.0
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee--CCeeeEEeehHHHHHHHHhcCCCCcccccccccCC
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 217 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~ 217 (259)
....++++|-+.....++..+.++.+.+..+.+..++++||+. .+.+.|++-.+|+++.+..... .-.++++..
T Consensus 65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~---~F~i~~lLR- 140 (293)
T COG4535 65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE---PFDIKELLR- 140 (293)
T ss_pred HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc---cccHHHhcc-
Confidence 4566899997778899999999999999999999999999998 6789999999999965433322 234455544
Q ss_pred CCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+.+.++++-.+...++-|+..+.+-..|||+.|-+.|.||-
T Consensus 141 Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTI 181 (293)
T COG4535 141 PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTI 181 (293)
T ss_pred cceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEH
Confidence 66889999999999999999999999999999999999984
No 194
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.27 E-value=1.5e-06 Score=61.34 Aligned_cols=50 Identities=30% Similarity=0.492 Sum_probs=46.8
Q ss_pred cccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 209 ~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.+++++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+|+.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~ 107 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITL 107 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEH
Confidence 56889998889999999999999999999999999999988999999986
No 195
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.26 E-value=2.1e-06 Score=60.55 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=50.1
Q ss_pred ccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHH
Q 025005 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLY 94 (259)
Q Consensus 41 ~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~ 94 (259)
.++.++|.+++.++++++++.++++.|.+++...+||+| +|+++|+++..++..
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 679999999999999999999999999999999999998 689999999998753
No 196
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.24 E-value=1.5e-05 Score=66.47 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=89.7
Q ss_pred CCCeEEeCcchHHHHHHHHHhCCccEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCC
Q 025005 49 RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTS 124 (259)
Q Consensus 49 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~----~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (259)
.+++++.|..++.++++....+++..+|+.++ ++++|+|+-.|+-.. +
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~--~-------------------------- 167 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL--E-------------------------- 167 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh--h--------------------------
Confidence 57788999999999999999999999999973 689999999998643 0
Q ss_pred CCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 125 ISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
.....+.++|+ ++.++.+.+.++.++-+++.+.+-..+||+| +|+++.++++.|+.
T Consensus 168 --------------~~~~~~~~vmt--~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~ 224 (503)
T KOG2550|consen 168 --------------DNSLLVSDVMT--KNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLM 224 (503)
T ss_pred --------------cccchhhhhcc--cccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhh
Confidence 12344788888 4568999999999999999998888899999 99999999999996
No 197
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.13 E-value=1.8e-05 Score=64.41 Aligned_cols=158 Identities=15% Similarity=0.206 Sum_probs=105.6
Q ss_pred ccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCC
Q 025005 47 MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (259)
Q Consensus 47 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (259)
+.+.++++.++ +.||+++ -+++.+..+|+++.+-+..+|+..-..+
T Consensus 214 l~KTIvFitHD--LdEAlri-----G~rIaimkdG~ivQ~Gtp~eIl~~PAnd--------------------------- 259 (386)
T COG4175 214 LKKTIVFITHD--LDEALRI-----GDRIAIMKDGEIVQVGTPEEILLNPAND--------------------------- 259 (386)
T ss_pred hCCeEEEEecC--HHHHHhc-----cceEEEecCCeEEEeCCHHHHHcCccHH---------------------------
Confidence 35677788887 8888886 2578899999999999999998641111
Q ss_pred ChhhHHHHH-HHh--hcCCCcccccCCCCCeeEeCCCc-hHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHh
Q 025005 127 GPNTFIETL-RER--MFRPSLSTIIPEKSKVVTISPTD-TVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS 201 (259)
Q Consensus 127 ~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~~v~~~~-~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~ 201 (259)
+.... .+. ..-.+.+++|.+ .+..+..... .-..+...+.......+.+++ .++.+|+++..+....
T Consensus 260 ----YV~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~--- 331 (386)
T COG4175 260 ----YVRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA--- 331 (386)
T ss_pred ----HHHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc---
Confidence 11111 110 011234556653 2222222222 233466666666655666666 7789999999887521
Q ss_pred cCCCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 202 QNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 202 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
.+.+.+.++..++++.+.+..+.+... .+||||++|+++|+|+|.
T Consensus 332 ------------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~ 376 (386)
T COG4175 332 ------------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRG 376 (386)
T ss_pred ------------cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHH
Confidence 344567889999999999999988775 688999999999999873
No 198
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.04 E-value=4.7e-05 Score=66.89 Aligned_cols=106 Identities=12% Similarity=0.211 Sum_probs=83.8
Q ss_pred CeeEeCCC-chHHHHHHHHHHcCCceEEEee---CCeeeEEeehHHHHHHHHhcC-CC---------------------C
Q 025005 153 KVVTISPT-DTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQN-LP---------------------A 206 (259)
Q Consensus 153 ~~~~v~~~-~~l~~~~~~~~~~~~~~~~V~~---~g~~~Giit~~di~~~~~~~~-~~---------------------~ 206 (259)
....+.++ .++.++..+|.+..++.+||+- +.+++|++.++|+...+...+ .+ .
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~ 636 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIP 636 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCC
Confidence 34555544 7999999999999888888875 678999999999985555221 00 1
Q ss_pred cccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 207 DSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 207 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
.....+++|+..|.++...++...+++++++-+.+...|. ++|++.|+||++
T Consensus 637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkk 688 (696)
T KOG0475|consen 637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKK 688 (696)
T ss_pred CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehH
Confidence 1245667778889999999999999999999999988774 599999999985
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.96 E-value=7e-05 Score=65.83 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=90.8
Q ss_pred CeEEeC-cchHHHHHHHHHhCCccEeeEee---CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCC
Q 025005 51 PTFVLS-DTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSIS 126 (259)
Q Consensus 51 ~~~v~~-~~~l~~a~~~~~~~~~~~~pV~d---~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (259)
..++.. +.++.+...+|.++..+.+||+- ..+++|++++.++...+...-.... ... ..+.
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~--~~~--------~~~~----- 622 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQS--FIV--------TTSI----- 622 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccc--cce--------eccc-----
Confidence 566655 48999999999999999999874 3789999999999887553211110 000 0000
Q ss_pred ChhhHHH-HHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHH
Q 025005 127 GPNTFIE-TLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILM 197 (259)
Q Consensus 127 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~ 197 (259)
...+..+ ..........++++|. -.+.++...++...+++++++.+.+...|.++|++.|+||.+|+++
T Consensus 623 ~f~~~~~~~~~~~~~~~~lk~il~--~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~ 692 (696)
T KOG0475|consen 623 YFNDPSPSAVAGIPSRLDLKDILD--MTPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLR 692 (696)
T ss_pred ccCCCCccccCCCCCCcCceeecc--CCcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHH
Confidence 0000000 0111122334567775 5688999999999999999999999999999999999999999984
No 200
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.80 E-value=9.4e-05 Score=42.64 Aligned_cols=44 Identities=34% Similarity=0.403 Sum_probs=39.7
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHH
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~ 197 (259)
+.++.++.++.++.+.|.+.+.+.+||++ ++++.|+++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~ 46 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIK 46 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHH
Confidence 56788999999999999999999999999 689999999999863
No 201
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.75 E-value=0.00012 Score=42.16 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=40.3
Q ss_pred CeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHH
Q 025005 51 PTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYD 95 (259)
Q Consensus 51 ~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~ 95 (259)
+.++++++++.++++.|.+++...+||++ +++++|+++..++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHh
Confidence 56789999999999999999999999998 4899999999998754
No 202
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.57 E-value=0.0017 Score=55.58 Aligned_cols=139 Identities=9% Similarity=0.045 Sum_probs=85.3
Q ss_pred CEEEEEcCCCeEEEEEehhHHHH--------HHHHhcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEe
Q 025005 7 DALLLTDSNALLCGILTDKDIAT--------RVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVV 78 (259)
Q Consensus 7 ~~~~v~~~~~~~~g~~t~~di~~--------~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~ 78 (259)
..+.+++ +|+++..-+..+++. .+........=+++.++|.+.......+.+ .+++. ++...++|+
T Consensus 233 DrI~vl~-~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~ 306 (382)
T TIGR03415 233 NRIAIME-GGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTI 306 (382)
T ss_pred CEEEEEE-CCEEEEecCHHHHhhCcchHHHHHHhcccCcccceeHHHHhcccccccccCcc--hhhhh---cccceeEee
Confidence 4455555 577887777777642 111111223335678888433322233322 34433 677888888
Q ss_pred eCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeC
Q 025005 79 ENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158 (259)
Q Consensus 79 d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~ 158 (259)
|+ |+++..+....... .....+.+ +. .+..+++
T Consensus 307 ~~----~~~~~~~~~~~~~~----------------------------------------~~~~~~~~-~~--~~~~~~~ 339 (382)
T TIGR03415 307 DK----QVRRRDAKLPVQAW----------------------------------------AAEQEVES-LE--AAPTVIN 339 (382)
T ss_pred cc----ceecccchHhHhhc----------------------------------------ccccchhh-hc--ccCcccC
Confidence 87 67765554321000 00111223 21 4577899
Q ss_pred CCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHH
Q 025005 159 PTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV 199 (259)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~ 199 (259)
+++++.+++..+.+.+.. ++|+++|+++|+|+..+++..+
T Consensus 340 ~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~ 379 (382)
T TIGR03415 340 PDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHAL 379 (382)
T ss_pred CCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHHH
Confidence 999999999998887765 7778889999999999998554
No 203
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.45 E-value=0.0021 Score=55.08 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=56.3
Q ss_pred cCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCce
Q 025005 173 LRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMP 252 (259)
Q Consensus 173 ~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~ 252 (259)
.+...+.|++. |+++..+.. .+..... ..++.+ +..+..++++++++.+++..+.+.+. .++|+|+ |++
T Consensus 298 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~ 366 (382)
T TIGR03415 298 RRDTWLFTIDK----QVRRRDAKL-PVQAWAA---EQEVES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN-GRI 366 (382)
T ss_pred cccceeEeecc----ceecccchH-hHhhccc---ccchhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeE
Confidence 66778888875 788877764 3333111 123555 55577899999999999999999885 5889995 999
Q ss_pred eeEEec
Q 025005 253 ITCYSK 258 (259)
Q Consensus 253 ~Gvitr 258 (259)
+|+|+|
T Consensus 367 ~g~~~~ 372 (382)
T TIGR03415 367 VGVIGD 372 (382)
T ss_pred EEEEeH
Confidence 999997
No 204
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.0031 Score=56.96 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=53.7
Q ss_pred CCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeC---CeEEEEEeHHHHHHHHHH
Q 025005 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIA 98 (259)
Q Consensus 37 ~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~---~~~vGvi~~~~i~~~~~~ 98 (259)
......|+++|.+++.++..+.+..|..+.+..+.++.+|++|+ --++|-+.+..+...+-.
T Consensus 584 ~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 584 SVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred ceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 44467799999999999999999999999998877999999983 469999999998877654
No 205
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0025 Score=52.26 Aligned_cols=133 Identities=11% Similarity=0.112 Sum_probs=92.9
Q ss_pred cCCCeEEEEEehhHHHHHH-------HHhcC-CCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee-CC
Q 025005 13 DSNALLCGILTDKDIATRV-------IAREL-NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NG 81 (259)
Q Consensus 13 ~~~~~~~g~~t~~di~~~~-------~~~~~-~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~ 81 (259)
-++|+++.+=|..+|+..- |-++. ...=.++.++|.. ..+.-.+...-..++..+.+.....+..++ ++
T Consensus 238 mkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 317 (386)
T COG4175 238 MKDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGN 317 (386)
T ss_pred ecCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccC
Confidence 3479999999999987422 11121 2223567788863 222223344555688888887766666666 57
Q ss_pred eEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCc
Q 025005 82 EVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTD 161 (259)
Q Consensus 82 ~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~ 161 (259)
+.+|+++..+.... .+ .+.+.+++.++
T Consensus 318 ~~~g~v~~~~~~~~---------------------------------------------------~~--~~~~~~v~~d~ 344 (386)
T COG4175 318 KFVGVVSIDSLVKA---------------------------------------------------AL--IDDVLTVDADT 344 (386)
T ss_pred ceeeEEeccchhcc---------------------------------------------------cc--cccccccCccc
Confidence 79999998877642 01 15688899999
Q ss_pred hHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHH
Q 025005 162 TVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (259)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~ 199 (259)
++.+.+..+.+.+.+ ++|+| +|+++|+++...++..+
T Consensus 345 ~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL 382 (386)
T COG4175 345 PLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEAL 382 (386)
T ss_pred hHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHH
Confidence 999999888877764 67777 99999999999998544
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.57 E-value=0.078 Score=42.50 Aligned_cols=83 Identities=18% Similarity=0.079 Sum_probs=54.7
Q ss_pred ceEEEeeCCeeeEEeehHHHH--------HHHHhcCCC----CcccccccccCCCC----ceecCCCCHHHHHHHHHhCC
Q 025005 176 SSAVVTVENKPRGILTSKDIL--------MRVISQNLP----ADSTLVEKVMTPNP----ECATIDTPIVDALHIMHDGK 239 (259)
Q Consensus 176 ~~~~V~~~g~~~Giit~~di~--------~~~~~~~~~----~~~~~v~~~~~~~~----~~v~~~~~l~~a~~~~~~~~ 239 (259)
..+.|+++|+++=+-+..+++ +.++..+.. .....+.+.+.+.. -.........+++..+...+
T Consensus 204 dri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~ 283 (309)
T COG1125 204 DRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARG 283 (309)
T ss_pred ceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcC
Confidence 356777788999888866554 444433311 11234444443211 22344555666888888889
Q ss_pred CceeeeecCCCceeeEEec
Q 025005 240 FLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 240 ~~~l~Vvd~~~~~~Gvitr 258 (259)
...+||||++|+++|.||+
T Consensus 284 ~~~~~Vvd~~g~~~G~vt~ 302 (309)
T COG1125 284 RSVLPVVDEDGRPLGTVTR 302 (309)
T ss_pred CceeEEECCCCcEeeEEEH
Confidence 9999999999999999997
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.63 E-value=0.27 Score=39.53 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=59.1
Q ss_pred EEEEEcCCCeEEEEEehhH--------HHHHHHHhc----CCCCcccccccccCCC----eEEeCcchHHHHHHHHHhCC
Q 025005 8 ALLLTDSNALLCGILTDKD--------IATRVIARE----LNLEETPVSKVMTRNP----TFVLSDTLAVEALQKMVQGK 71 (259)
Q Consensus 8 ~~~v~~~~~~~~g~~t~~d--------i~~~~~~~~----~~~~~~~v~~~~~~~~----~~v~~~~~l~~a~~~~~~~~ 71 (259)
.+.|++ +|+++.+=+..+ +++.++..+ ..+....+.+.|.... -.......-.+++..+...+
T Consensus 205 ri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~ 283 (309)
T COG1125 205 RIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARG 283 (309)
T ss_pred eEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcC
Confidence 355666 688999999555 444444333 2333455666664432 12334556667888888888
Q ss_pred ccEeeEee-CCeEEEEEeHHHHHHH
Q 025005 72 FRHLPVVE-NGEVIALLDIAKCLYD 95 (259)
Q Consensus 72 ~~~~pV~d-~~~~vGvi~~~~i~~~ 95 (259)
...+||+| +|+++|.++..+++..
T Consensus 284 ~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 284 RSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred CceeEEECCCCcEeeEEEHHHHhhh
Confidence 99999999 7999999999998753
No 208
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=93.05 E-value=0.18 Score=44.83 Aligned_cols=107 Identities=15% Similarity=0.201 Sum_probs=80.4
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHH-HHHHHHHHcCCceEEEee---CCeeeEEeehHHHHHHHHhcCCCCcccccccc
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVL-MATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKV 214 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~---~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~ 214 (259)
+....++++|++-.++..++.+..+. +......+.+++++||.+ ...+.|.+....+ .+..........++...
T Consensus 201 l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~--~~~~~~~~~~~~~v~~~ 278 (498)
T KOG2118|consen 201 LTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL--RLLQVEVPLEPLPVSES 278 (498)
T ss_pred HHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh--hhhccccccccccchhh
Confidence 34455788888777888888888876 666667789999999998 2334444544444 34333334456788888
Q ss_pred cCCCCceecCCCCHHHHHHHHHhCCCceeeeec
Q 025005 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVD 247 (259)
Q Consensus 215 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd 247 (259)
+......++.++++.+.++.+.+.+.+.+.|.+
T Consensus 279 ~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~ 311 (498)
T KOG2118|consen 279 ALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN 311 (498)
T ss_pred hccccccCCCcccHHHHHHHHhhhhceeEEEec
Confidence 888889999999999999999999999888877
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=88.73 E-value=2.4 Score=36.51 Aligned_cols=143 Identities=15% Similarity=0.101 Sum_probs=86.8
Q ss_pred CeEEEEEehhHHHHHHHHhcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHH
Q 025005 16 ALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLY 94 (259)
Q Consensus 16 ~~~~g~~t~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~ 94 (259)
++=+|++|.+.. .+...+++. +-+++|.-++..+..-..+.+|+..|.+. .+..+| -|+ +..|-..
T Consensus 233 ~~kVaiITtDtY---RIGA~EQLk--~Ya~im~vp~~vv~~~~el~~ai~~l~~~---d~ILVDTaGr-----s~~D~~~ 299 (407)
T COG1419 233 KKKVAIITTDTY---RIGAVEQLK--TYADIMGVPLEVVYSPKELAEAIEALRDC---DVILVDTAGR-----SQYDKEK 299 (407)
T ss_pred CcceEEEEeccc---hhhHHHHHH--HHHHHhCCceEEecCHHHHHHHHHHhhcC---CEEEEeCCCC-----CccCHHH
Confidence 445788887763 333333442 56788988999999999999999999886 455666 565 4444332
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcC
Q 025005 95 DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR 174 (259)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~ 174 (259)
. ..+... .........++-.+.-..+.....+...+...++..++ +.-+++..++..++.+|.+.+
T Consensus 300 i--~el~~~-------~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I-----~TKlDET~s~G~~~s~~~e~~ 365 (407)
T COG1419 300 I--EELKEL-------IDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLI-----FTKLDETTSLGNLFSLMYETR 365 (407)
T ss_pred H--HHHHHH-------HhccccceEEEEEecCcchHHHHHHHHHhccCCcceeE-----EEcccccCchhHHHHHHHHhC
Confidence 1 111111 11111222222222223334444455556666666666 556788888899999998888
Q ss_pred CceEEEeeCCe
Q 025005 175 LSSAVVTVENK 185 (259)
Q Consensus 175 ~~~~~V~~~g~ 185 (259)
.+...|+++.+
T Consensus 366 ~PV~YvT~GQ~ 376 (407)
T COG1419 366 LPVSYVTNGQR 376 (407)
T ss_pred CCeEEEeCCCC
Confidence 88888887433
No 210
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=87.30 E-value=0.76 Score=41.03 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=85.4
Q ss_pred hcCCCCcccccccccC--CCeEEeCcchHH-HHHHHHHhCCccEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHhhhhH
Q 025005 34 RELNLEETPVSKVMTR--NPTFVLSDTLAV-EALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGK 108 (259)
Q Consensus 34 ~~~~~~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~pV~d~--~~~vGvi~~~~i~~~~~~~~~~~~~~~~ 108 (259)
....+.+..++++|++ .+..++.+..+. +......+.+++++||.+. ...+|.+=....+.....
T Consensus 197 g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~---------- 266 (498)
T KOG2118|consen 197 GALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQV---------- 266 (498)
T ss_pred hhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcc----------
Confidence 3346667788999975 677778888887 4555566899999999983 334444211111111000
Q ss_pred HHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeE
Q 025005 109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRG 188 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~G 188 (259)
...+...++...+. ....-+++++++.+..+.+.+.+.+.+.|.+...-.|
T Consensus 267 ---------------------------~~~~~~~~v~~~~~--~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~~~~~~ 317 (498)
T KOG2118|consen 267 ---------------------------EVPLEPLPVSESAL--LRLPLVPENMPLLDLLNEFQKGKSHMAVVRNGHVDIF 317 (498)
T ss_pred ---------------------------ccccccccchhhhc--cccccCCCcccHHHHHHHHhhhhceeEEEecCCccee
Confidence 00123344555554 5688899999999999999998888888877667789
Q ss_pred EeehHHHHHHHH
Q 025005 189 ILTSKDILMRVI 200 (259)
Q Consensus 189 iit~~di~~~~~ 200 (259)
+++..|+ +...
T Consensus 318 ~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 318 VLTLEDL-EEVV 328 (498)
T ss_pred eEeccch-hhhc
Confidence 9999987 5555
No 211
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=86.62 E-value=0.49 Score=43.49 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=45.5
Q ss_pred ccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecC--CCceeeEEecC
Q 025005 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDR--GDMPITCYSKK 259 (259)
Q Consensus 208 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~--~~~~~Gvitr~ 259 (259)
...++++|.+++..+..++|..|..+.+....++.+|+||. +--++|-|.|+
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~ 640 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARR 640 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHH
Confidence 36788999999999999999999999999988999999983 34689988773
No 212
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=83.78 E-value=4.7 Score=37.44 Aligned_cols=91 Identities=12% Similarity=0.063 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcC----CCCcccccc----c--ccCCCCceecCCCCHHHH
Q 025005 163 VLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN----LPADSTLVE----K--VMTPNPECATIDTPIVDA 231 (259)
Q Consensus 163 l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~----~~~~~~~v~----~--~~~~~~~~v~~~~~l~~a 231 (259)
+.++.+.+...+ ..++++| +|.++.+....+++..+...+ ..|....++ . .....+..+...+...+.
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~~ 139 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQA 139 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHHh
Confidence 445555565555 5788889 999999999888875543322 222211111 0 112345666666655544
Q ss_pred HHHHHhCCCceeeeecCCCceeeEEe
Q 025005 232 LHIMHDGKFLHLPVVDRGDMPITCYS 257 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~~Gvit 257 (259)
+........||.|.+|+++|+|+
T Consensus 140 ---~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 140 ---LHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ---ccCceEEeeEEEcCCCCEEEEEE
Confidence 34445567899999999999995
No 213
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=65.13 E-value=40 Score=31.40 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=49.2
Q ss_pred CEEEEEcCCCeEEEEEehhHHHHHHHHh----cCCCCcccccc-----cc-cCCCeEEeCcchHHHHHHHHHhCCccEee
Q 025005 7 DALLLTDSNALLCGILTDKDIATRVIAR----ELNLEETPVSK-----VM-TRNPTFVLSDTLAVEALQKMVQGKFRHLP 76 (259)
Q Consensus 7 ~~~~v~~~~~~~~g~~t~~di~~~~~~~----~~~~~~~~v~~-----~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~~p 76 (259)
..+++.|++|.++.+....++++.+... +..+.+..++. .. ...++.+....=+.+ .+........|
T Consensus 73 ~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH~~~---~~~~~~c~aaP 149 (638)
T PRK11388 73 CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQHFKQ---ALHNWAFCATP 149 (638)
T ss_pred cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHhcCCceEEecHHHHHH---hccCceEEeeE
Confidence 5788899999999999988877554332 22222211111 11 245555555543433 33344567889
Q ss_pred Eee-CCeEEEEEe
Q 025005 77 VVE-NGEVIALLD 88 (259)
Q Consensus 77 V~d-~~~~vGvi~ 88 (259)
|.| +|+++|+++
T Consensus 150 I~d~~G~liGvl~ 162 (638)
T PRK11388 150 VFDSKGRLTGTIA 162 (638)
T ss_pred EEcCCCCEEEEEE
Confidence 999 699999996
No 214
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=62.07 E-value=21 Score=22.95 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=21.3
Q ss_pred cCEEEEEcCCCeEEEEEehhHHHHHHHHhc
Q 025005 6 VDALLLTDSNALLCGILTDKDIATRVIARE 35 (259)
Q Consensus 6 ~~~~~v~~~~~~~~g~~t~~di~~~~~~~~ 35 (259)
.+.+-|++++|..+|+++..+.++..-..+
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~ 41 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKG 41 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcC
Confidence 566788899999999999999875554443
No 215
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=56.96 E-value=11 Score=26.34 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=12.7
Q ss_pred ceeeeecCCCceeeEEe
Q 025005 241 LHLPVVDRGDMPITCYS 257 (259)
Q Consensus 241 ~~l~Vvd~~~~~~Gvit 257 (259)
-..||.|.+|+++|+|+
T Consensus 92 ~~~PV~d~~g~viG~V~ 108 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVS 108 (116)
T ss_dssp EEEEEE-TTS-EEEEEE
T ss_pred EEEeeECCCCcEEEEEE
Confidence 35799988999999986
No 216
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=40.91 E-value=20 Score=24.45 Aligned_cols=20 Identities=15% Similarity=-0.011 Sum_probs=16.6
Q ss_pred HhCCCceeeeecCCCceeeE
Q 025005 236 HDGKFLHLPVVDRGDMPITC 255 (259)
Q Consensus 236 ~~~~~~~l~Vvd~~~~~~Gv 255 (259)
...+...-||+|.+|+++||
T Consensus 101 ~~~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 101 TRPGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp -STTTTTSEEEETTSEEEEE
T ss_pred cCCCcEeHhEECCCCEEEeC
Confidence 34577889999999999997
No 217
>CHL00199 infC translation initiation factor 3; Provisional
Probab=40.13 E-value=44 Score=25.58 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=26.0
Q ss_pred CcCEEEEEcCCCeEEEEEehhHHHHHHHHhcCCC
Q 025005 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (259)
Q Consensus 5 ~~~~~~v~~~~~~~~g~~t~~di~~~~~~~~~~~ 38 (259)
+.+.+-|++++|...|+++..+.++.....+.++
T Consensus 23 ~~~~VrlI~~~G~~lGv~~~~eAl~~A~~~~lDL 56 (182)
T CHL00199 23 RFPKVRVIDDSGEQLGIFTSEQAIQLAANQGLDL 56 (182)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCE
Confidence 4567888999999999999999886555544443
No 218
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=39.24 E-value=22 Score=26.07 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=15.1
Q ss_pred CceeeeecCCCceeeEEec
Q 025005 240 FLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 240 ~~~l~Vvd~~~~~~Gvitr 258 (259)
...+||++ +|+++|+++|
T Consensus 106 ~~~~PI~~-~~~vIaVl~~ 123 (145)
T PF12282_consen 106 QEVVPIRR-NGRVIAVLIR 123 (145)
T ss_dssp EEEEEEEE-TTEEEEEEEE
T ss_pred EEEEEEEE-CCEEEEEEEE
Confidence 45789999 5699999986
No 219
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=38.58 E-value=71 Score=29.41 Aligned_cols=91 Identities=8% Similarity=-0.056 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCceEEEee-CCeeeEEeeh----HHHHHHHHhcCCCCccccccc------ccCCCCceecCCCCHHHH
Q 025005 163 VLMATKKMLELRLSSAVVTV-ENKPRGILTS----KDILMRVISQNLPADSTLVEK------VMTPNPECATIDTPIVDA 231 (259)
Q Consensus 163 l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~----~di~~~~~~~~~~~~~~~v~~------~~~~~~~~v~~~~~l~~a 231 (259)
+..+.+.+...++ ++.++| +|.+++..-. .+.-+.-+-.+..|....++. +....++++..++....+
T Consensus 76 L~~L~~~v~~~~~-~vLLtD~~GViL~~~G~~~~~~~~rk~gl~~Ga~WSE~~~GTNgIGTcLve~~aVtI~~~qHF~~~ 154 (606)
T COG3284 76 LDRLFQAVAGSGC-CVLLTDADGVILERRGDPRDDEDFRKAGLWLGAVWSEPREGTNGIGTCLVEGEAVTIHGDQHFIQA 154 (606)
T ss_pred HHHHHHHhcCCCe-EEEEEcCceeEEEeecChhhhhhhhhhccccccccccccccccchhhhhccCcceEEehhhhHhhc
Confidence 4455555555554 778888 8988887655 222111112233333211111 223467888888876665
Q ss_pred HHHHHhCCCceeeeecCCCceeeEEe
Q 025005 232 LHIMHDGKFLHLPVVDRGDMPITCYS 257 (259)
Q Consensus 232 ~~~~~~~~~~~l~Vvd~~~~~~Gvit 257 (259)
.. .......||-|+.|++.|++.
T Consensus 155 ~~---~lsCsAaPI~D~qG~L~gVLD 177 (606)
T COG3284 155 HH---GLSCSAAPIFDEQGELVGVLD 177 (606)
T ss_pred cc---CceeeeeccccCCCcEEEEEE
Confidence 43 334567899999999999986
No 220
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=38.54 E-value=33 Score=21.83 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=13.4
Q ss_pred eeeeecCCCceeeEEe
Q 025005 242 HLPVVDRGDMPITCYS 257 (259)
Q Consensus 242 ~l~Vvd~~~~~~Gvit 257 (259)
..||.+++|+++|++.
T Consensus 18 s~pi~~~~g~~~Gvv~ 33 (81)
T PF02743_consen 18 SVPIYDDDGKIIGVVG 33 (81)
T ss_dssp EEEEEETTTEEEEEEE
T ss_pred EEEEECCCCCEEEEEE
Confidence 4688888899999985
No 221
>PF14044 NETI: NETI protein
Probab=37.85 E-value=47 Score=19.92 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.5
Q ss_pred eecCCCCHHHHHHHHHhCCCc
Q 025005 221 CATIDTPIVDALHIMHDGKFL 241 (259)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~ 241 (259)
.+.++.|+.++++.|.+.|+.
T Consensus 3 eV~enETI~~CL~RM~~eGY~ 23 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGYM 23 (57)
T ss_pred eccCCCcHHHHHHHHHHcCCC
Confidence 477899999999999999873
No 222
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=37.24 E-value=70 Score=24.16 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=23.8
Q ss_pred CcCEEEEEcCCCeEEEEEehhHHHHHHHH
Q 025005 5 RVDALLLTDSNALLCGILTDKDIATRVIA 33 (259)
Q Consensus 5 ~~~~~~v~~~~~~~~g~~t~~di~~~~~~ 33 (259)
|++-+-+++++|.-+|+++..+.++..-.
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e 45 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEE 45 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHH
Confidence 56778899999999999999998754433
No 223
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=36.98 E-value=70 Score=28.95 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHH
Q 025005 59 LAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIA 98 (259)
Q Consensus 59 ~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~ 98 (259)
.+..+.+...+.+-.-++|+++++++|+|...|+++.-++
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ 453 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIK 453 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHH
Confidence 4666666777777677888999999999999999987554
No 224
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=32.76 E-value=51 Score=24.61 Aligned_cols=18 Identities=33% Similarity=0.785 Sum_probs=15.2
Q ss_pred EeeEeeCCeEEEEEeHHH
Q 025005 74 HLPVVENGEVIALLDIAK 91 (259)
Q Consensus 74 ~~pV~d~~~~vGvi~~~~ 91 (259)
.+|+..+|+++|+++...
T Consensus 118 VvPi~~~g~~iGvlDiDS 135 (163)
T COG1956 118 VVPIFKDGKLIGVLDIDS 135 (163)
T ss_pred EEEEEECCEEEEEEecCC
Confidence 569999999999997654
No 225
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=31.22 E-value=54 Score=24.68 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=24.9
Q ss_pred CcCEEEEEcCCCeEEEEEehhHHHHHHHHhcCC
Q 025005 5 RVDALLLTDSNALLCGILTDKDIATRVIARELN 37 (259)
Q Consensus 5 ~~~~~~v~~~~~~~~g~~t~~di~~~~~~~~~~ 37 (259)
+++.+-+++++|...|+++..+.++.....+.+
T Consensus 6 ~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lD 38 (165)
T TIGR00168 6 RFNEVRLIDENGEQLGIVSREEALEIAEEAGLD 38 (165)
T ss_pred CCCEEEEECCCCcCCCcccHHHHHHHHHHcCCc
Confidence 456788889899899999999987655544433
No 226
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=29.15 E-value=99 Score=18.74 Aligned_cols=38 Identities=16% Similarity=0.042 Sum_probs=29.8
Q ss_pred CCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHH
Q 025005 158 SPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDI 195 (259)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di 195 (259)
....++.++++...+.+++.+.++|.+.+.|.....+.
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~ 49 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKA 49 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHH
Confidence 44567889999999999999999997677776655444
No 227
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=29.14 E-value=69 Score=24.42 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=24.4
Q ss_pred CcCEEEEEcCCCeEEEEEehhHHHHHHHHhcCCC
Q 025005 5 RVDALLLTDSNALLCGILTDKDIATRVIARELNL 38 (259)
Q Consensus 5 ~~~~~~v~~~~~~~~g~~t~~di~~~~~~~~~~~ 38 (259)
+...+-|++++|..+|+++..+.++.....+.++
T Consensus 18 ~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDL 51 (177)
T PRK00028 18 RAREVRLIGDDGEQLGIVSTREALELAEEAGLDL 51 (177)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCE
Confidence 3566778888888999999999876554444333
No 228
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=27.39 E-value=43 Score=22.09 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=19.3
Q ss_pred CCCeEEEEEehhHHHHHHHHh-cCCC
Q 025005 14 SNALLCGILTDKDIATRVIAR-ELNL 38 (259)
Q Consensus 14 ~~~~~~g~~t~~di~~~~~~~-~~~~ 38 (259)
++|++.|=+|..||...+... +..+
T Consensus 24 ~~gklfGSVt~~dIa~~l~~~~g~~I 49 (87)
T PF03948_consen 24 ENGKLFGSVTSKDIAKALKEQTGIEI 49 (87)
T ss_dssp SCSSBSSEBSHHHHHHHHHHCCSSSS
T ss_pred CCcceecCcCHHHHHHHHHHhhCCeE
Confidence 468999999999999777665 4433
No 229
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=26.37 E-value=1.1e+02 Score=27.69 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHh
Q 025005 162 TVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVIS 201 (259)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~ 201 (259)
.+..+.+.....+-.-++|++++++.|+|-.+|+++.-+.
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ 453 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIK 453 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHH
Confidence 3667777777777778899999999999999999855443
No 230
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=25.73 E-value=84 Score=19.48 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=14.4
Q ss_pred CCceeeeecCCCceeeEEe
Q 025005 239 KFLHLPVVDRGDMPITCYS 257 (259)
Q Consensus 239 ~~~~l~Vvd~~~~~~Gvit 257 (259)
|.=++-|+|++|+++|.+.
T Consensus 44 G~WrV~V~~~~G~~l~~~~ 62 (66)
T PF11141_consen 44 GDWRVEVVDEDGQVLGSLR 62 (66)
T ss_pred cCEEEEEEcCCCCEEEEEE
Confidence 4446778898999998764
No 231
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=25.09 E-value=2.5e+02 Score=25.69 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred eEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCee
Q 025005 76 PVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVV 155 (259)
Q Consensus 76 pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 155 (259)
|+.+.++++|++....-........... ...
T Consensus 84 ~~~~~~~~~g~~~~~~~~~e~~~~~~~~-l~~------------------------------------------------ 114 (560)
T COG3829 84 PVDEQGRVVGVLEVFLDISEALELIEEN-LRQ------------------------------------------------ 114 (560)
T ss_pred eeecCCceeeeehhhhhhHHHHHHHHHH-HHH------------------------------------------------
Q ss_pred EeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCccccccccc-----CCCCceecCCCCHH
Q 025005 156 TISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM-----TPNPECATIDTPIV 229 (259)
Q Consensus 156 ~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~-----~~~~~~v~~~~~l~ 229 (259)
..+.++.+.+.-...+.|+| .|.++.+-..... ..-.......+.++.++. +.....+....+..
T Consensus 115 -------~~~~l~~il~~~~~~l~vvD~~G~~i~~N~~~~~--~~gl~~e~~~gk~~~~v~~~~~~s~~l~vl~~~kp~~ 185 (560)
T COG3829 115 -------LRQRLEAILDSIDDGLLVVDEDGIIIYYNKAYAK--LLGLSPEEVLGKHLLDVVSAGEDSTLLEVLRTGKPIR 185 (560)
T ss_pred -------HHHHHHHHHhhccCceEEEcCCCcEEEEcHHHHH--HhCCCHHHHcCCcHHHHHhccCCceehhhhhcCCcce
Q ss_pred HHHHHHHhCC--CceeeeecCCCceeeEEe
Q 025005 230 DALHIMHDGK--FLHLPVVDRGDMPITCYS 257 (259)
Q Consensus 230 ~a~~~~~~~~--~~~l~Vvd~~~~~~Gvit 257 (259)
.......... ....||.. +|.++|+|.
T Consensus 186 ~~~~~~~~~~~i~~~~pv~~-~g~l~G~v~ 214 (560)
T COG3829 186 DVVQTYNGNKIIVNVAPVYA-DGQLIGVVG 214 (560)
T ss_pred eeeeeecCCceeEeeccEec-CCcEEEEEE
No 232
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=25.04 E-value=52 Score=29.71 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=41.1
Q ss_pred chHHHHHHHHHH-cCCceEEEee-CCeeeEEee--hHHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHHHHHH
Q 025005 161 DTVLMATKKMLE-LRLSSAVVTV-ENKPRGILT--SKDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMH 236 (259)
Q Consensus 161 ~~l~~~~~~~~~-~~~~~~~V~~-~g~~~Giit--~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~ 236 (259)
..+..+.+.+.. .+...+.|.| +| +-+-. ...+ +......+-+..+.-........-++..++
T Consensus 73 ~~iq~~~~~i~~~t~a~fIVV~d~~g--IR~~HP~perI-------Gkp~~ggde~a~~~G~~yvS~~kGslg~s~---- 139 (537)
T COG3290 73 ARIQAIAEAIRSITDADFIVVGDMKG--IRLTHPNPERI-------GKPFQGGDEEAALAGESYVSTAKGSLGKSL---- 139 (537)
T ss_pred hhHHHHHHHHHhhcCceEEEEecCCc--ceecCCChHHh-------CCCccCCCHHHHhCCceeEEEeeccchhhh----
Confidence 456666777665 5677777777 54 11111 1111 111111221122222222322333344333
Q ss_pred hCCCceeeeecCCCceeeEEe
Q 025005 237 DGKFLHLPVVDRGDMPITCYS 257 (259)
Q Consensus 237 ~~~~~~l~Vvd~~~~~~Gvit 257 (259)
-...||.|++|+.+|+|+
T Consensus 140 ---R~~~PI~d~~g~~IGvVs 157 (537)
T COG3290 140 ---RAKVPIFDEDGKQIGVVS 157 (537)
T ss_pred ---eeecceECCCCCEEEEEE
Confidence 245799999999999997
No 233
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=24.58 E-value=68 Score=22.86 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=12.9
Q ss_pred eeeeecCCCceeeEEec
Q 025005 242 HLPVVDRGDMPITCYSK 258 (259)
Q Consensus 242 ~l~Vvd~~~~~~Gvitr 258 (259)
-+|+.|++|+++|.-.|
T Consensus 80 ifPI~d~~G~vvgF~gR 96 (128)
T PF08275_consen 80 IFPIRDERGRVVGFGGR 96 (128)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEEEEcCCCCEEEEecc
Confidence 56999999999998766
No 234
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=24.56 E-value=55 Score=18.95 Aligned_cols=10 Identities=10% Similarity=0.029 Sum_probs=7.7
Q ss_pred ecCCCceeeE
Q 025005 246 VDRGDMPITC 255 (259)
Q Consensus 246 vd~~~~~~Gv 255 (259)
+|++|+++|+
T Consensus 35 ~d~~G~ivGI 44 (50)
T PF10049_consen 35 YDEDGRIVGI 44 (50)
T ss_pred ECCCCCEEEE
Confidence 4677888886
No 235
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=23.74 E-value=1.1e+02 Score=23.53 Aligned_cols=38 Identities=26% Similarity=0.159 Sum_probs=32.6
Q ss_pred CCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 159 PTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
....+.+++..+.+.++..++|+| +|--.|..+..++.
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~ 70 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFD 70 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHH
Confidence 344577888888999999999999 99999999999875
No 236
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=23.38 E-value=1.4e+02 Score=20.01 Aligned_cols=29 Identities=10% Similarity=-0.068 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCceeeeecCCCceeeEEe
Q 025005 228 IVDALHIMHDGKFLHLPVVDRGDMPITCYS 257 (259)
Q Consensus 228 l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvit 257 (259)
.... +.+.+.+...+.|+.++|+++|.+.
T Consensus 32 ~~~~-~~~~~~~~~~~~v~~~~~~ivG~~~ 60 (117)
T PF13673_consen 32 PEDL-EEYLEEGSHTIFVAEEGGEIVGFAW 60 (117)
T ss_dssp HHHH-HHHHCTCCCEEEEEEETTEEEEEEE
T ss_pred HHHH-HHHHHhcCCEEEEEEECCEEEEEEE
Confidence 4444 4444444467778888999999874
No 237
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=21.53 E-value=65 Score=20.21 Aligned_cols=17 Identities=18% Similarity=-0.103 Sum_probs=12.2
Q ss_pred CCceeeeecCCCceeeE
Q 025005 239 KFLHLPVVDRGDMPITC 255 (259)
Q Consensus 239 ~~~~l~Vvd~~~~~~Gv 255 (259)
+-.-+.=+|++|+++|+
T Consensus 29 ~edi~Idide~GkV~Gi 45 (69)
T COG5428 29 GEDILIDIDENGKVIGI 45 (69)
T ss_pred CCcEEEEecCCCcEEEE
Confidence 44455567889999997
No 238
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=20.88 E-value=85 Score=20.95 Aligned_cols=16 Identities=13% Similarity=-0.089 Sum_probs=10.5
Q ss_pred ceeeeecCCCceeeEE
Q 025005 241 LHLPVVDRGDMPITCY 256 (259)
Q Consensus 241 ~~l~Vvd~~~~~~Gvi 256 (259)
+..|+.|++|++.|++
T Consensus 84 ~~~P~~~~~g~~~G~v 99 (106)
T PF13596_consen 84 RYRPYRDEDGEYAGAV 99 (106)
T ss_dssp EEEEEE-TTS-EEEEE
T ss_pred EEEEEECCCCCEEEEE
Confidence 4567887788888875
No 239
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=20.85 E-value=1.2e+02 Score=22.00 Aligned_cols=19 Identities=11% Similarity=0.086 Sum_probs=15.5
Q ss_pred CcCEEEEEcCCCeEEEEEe
Q 025005 5 RVDALLLTDSNALLCGILT 23 (259)
Q Consensus 5 ~~~~~~v~~~~~~~~g~~t 23 (259)
|=+.-|+.|.+|+++||+=
T Consensus 106 GDSGRpi~DNsGrVVaIVL 124 (158)
T PF00944_consen 106 GDSGRPIFDNSGRVVAIVL 124 (158)
T ss_dssp TSTTEEEESTTSBEEEEEE
T ss_pred CCCCCccCcCCCCEEEEEe
Confidence 4466799999999999973
No 240
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=20.66 E-value=97 Score=26.46 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=18.5
Q ss_pred CCcCEEEEEcCCCeEEEEEeh
Q 025005 4 RRVDALLLTDSNALLCGILTD 24 (259)
Q Consensus 4 ~~~~~~~v~~~~~~~~g~~t~ 24 (259)
.+.+.-|++|.+|+++|+.+.
T Consensus 197 ~GnSGGpl~n~~G~vIGI~~~ 217 (351)
T TIGR02038 197 AGNSGGALINTNGELVGINTA 217 (351)
T ss_pred CCCCcceEECCCCeEEEEEee
Confidence 567788999999999999985
No 241
>PHA00673 acetyltransferase domain containing protein
Probab=20.36 E-value=2e+02 Score=21.37 Aligned_cols=31 Identities=23% Similarity=0.138 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHhCCCceeeeecCCCceeeEE
Q 025005 226 TPIVDALHIMHDGKFLHLPVVDRGDMPITCY 256 (259)
Q Consensus 226 ~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvi 256 (259)
.+..++++.+....-..+.|..++|+++|.+
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~ 70 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFA 70 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEE
Confidence 6677888999988888888887789999965
Done!