Query 025005
Match_columns 259
No_of_seqs 151 out of 2710
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 18:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kh5_A Protein MJ1225; AMPK, A 100.0 3.3E-33 1.1E-37 228.2 18.2 218 1-258 30-272 (280)
2 3ddj_A CBS domain-containing p 100.0 1.3E-32 4.4E-37 226.7 14.5 215 1-258 46-276 (296)
3 2yzq_A Putative uncharacterize 100.0 1.5E-31 5.1E-36 218.8 17.3 213 1-259 27-271 (282)
4 3t4n_C Nuclear protein SNF4; C 100.0 2.4E-31 8.2E-36 221.7 17.3 222 1-258 58-311 (323)
5 2qrd_G Protein C1556.08C; AMPK 100.0 1.6E-29 5.4E-34 211.7 19.5 222 1-258 50-306 (334)
6 2v8q_E 5'-AMP-activated protei 100.0 6E-29 2.1E-33 207.9 18.3 226 1-258 63-314 (330)
7 3ddj_A CBS domain-containing p 99.9 4E-26 1.4E-30 187.9 14.3 192 34-258 13-205 (296)
8 2yzq_A Putative uncharacterize 99.9 1.7E-25 6E-30 182.7 12.6 172 42-258 2-175 (282)
9 3kh5_A Protein MJ1225; AMPK, A 99.9 2E-24 7E-29 176.0 17.8 187 44-258 7-196 (280)
10 3t4n_C Nuclear protein SNF4; C 99.9 5.1E-23 1.7E-27 171.3 18.2 198 39-259 28-240 (323)
11 2v8q_E 5'-AMP-activated protei 99.9 1.7E-23 5.9E-28 174.7 14.5 196 40-259 34-243 (330)
12 2qrd_G Protein C1556.08C; AMPK 99.9 1.2E-21 4E-26 163.9 17.4 199 40-258 21-234 (334)
13 4esy_A CBS domain containing m 99.9 5.9E-22 2E-26 149.9 8.3 147 38-201 15-162 (170)
14 3k6e_A CBS domain protein; str 99.8 2.4E-20 8E-25 139.0 11.2 118 140-259 13-134 (156)
15 3lv9_A Putative transporter; C 99.8 1E-19 3.5E-24 134.3 14.4 137 20-201 4-145 (148)
16 4esy_A CBS domain containing m 99.8 8.3E-21 2.8E-25 143.5 8.6 120 136-258 12-153 (170)
17 3lv9_A Putative transporter; C 99.8 1.7E-19 5.9E-24 133.1 11.5 115 139-258 20-136 (148)
18 3lhh_A CBS domain protein; str 99.8 4.3E-19 1.5E-23 134.4 13.1 142 16-202 19-165 (172)
19 3i8n_A Uncharacterized protein 99.8 1.3E-19 4.6E-24 130.7 9.4 116 139-258 3-120 (130)
20 3l2b_A Probable manganase-depe 99.8 1.3E-18 4.3E-23 139.2 16.0 210 40-259 6-236 (245)
21 3hf7_A Uncharacterized CBS-dom 99.8 6.8E-20 2.3E-24 132.3 7.7 114 143-258 3-118 (130)
22 3lhh_A CBS domain protein; str 99.8 3.8E-19 1.3E-23 134.6 11.0 115 139-258 39-155 (172)
23 2ef7_A Hypothetical protein ST 99.8 9.9E-19 3.4E-23 126.5 12.7 114 141-258 3-116 (133)
24 3gby_A Uncharacterized protein 99.8 3.6E-19 1.2E-23 128.1 10.0 114 141-258 4-117 (128)
25 1vr9_A CBS domain protein/ACT 99.8 6E-19 2E-23 138.1 11.9 162 38-250 10-174 (213)
26 3kpb_A Uncharacterized protein 99.8 5E-19 1.7E-23 126.1 10.4 109 143-258 2-111 (122)
27 1pbj_A Hypothetical protein; s 99.8 1E-18 3.5E-23 125.0 11.3 112 143-258 2-113 (125)
28 2yzi_A Hypothetical protein PH 99.8 1.2E-18 4.2E-23 126.8 11.7 115 140-258 5-120 (138)
29 3fv6_A YQZB protein; CBS domai 99.8 1.6E-18 5.5E-23 129.5 12.5 121 134-258 9-135 (159)
30 3k2v_A Putative D-arabinose 5- 99.8 1.2E-18 4.1E-23 128.7 11.6 116 141-258 27-143 (149)
31 3nqr_A Magnesium and cobalt ef 99.8 1.7E-19 5.7E-24 129.7 6.5 113 142-258 3-117 (127)
32 2rc3_A CBS domain; in SITU pro 99.8 7.2E-19 2.5E-23 127.6 9.9 115 143-258 7-122 (135)
33 3lfr_A Putative metal ION tran 99.8 2.3E-19 8E-24 130.5 7.1 114 142-258 3-118 (136)
34 3i8n_A Uncharacterized protein 99.8 9.8E-19 3.4E-23 126.2 10.3 123 37-201 2-129 (130)
35 2rih_A Conserved protein with 99.8 3E-18 1E-22 125.3 13.0 112 142-258 5-119 (141)
36 3kpb_A Uncharacterized protein 99.8 2.2E-18 7.4E-23 122.8 11.9 116 41-199 1-118 (122)
37 2ef7_A Hypothetical protein ST 99.8 4E-18 1.4E-22 123.3 13.4 123 39-201 2-125 (133)
38 3ocm_A Putative membrane prote 99.8 4.4E-18 1.5E-22 128.8 13.6 140 17-202 14-158 (173)
39 3ctu_A CBS domain protein; str 99.8 2E-18 6.7E-23 128.5 11.4 119 139-259 12-134 (156)
40 3fhm_A Uncharacterized protein 99.8 5.8E-18 2E-22 127.2 13.9 129 35-201 18-150 (165)
41 1pbj_A Hypothetical protein; s 99.8 3.9E-18 1.3E-22 121.9 12.5 120 42-200 2-121 (125)
42 1y5h_A Hypothetical protein RV 99.8 5.8E-19 2E-23 127.8 8.1 114 142-258 8-122 (133)
43 3fhm_A Uncharacterized protein 99.8 9.4E-19 3.2E-23 131.5 9.5 119 139-258 21-141 (165)
44 3oco_A Hemolysin-like protein 99.8 7.5E-19 2.6E-23 130.4 8.7 115 139-258 17-134 (153)
45 3gby_A Uncharacterized protein 99.8 1.7E-18 5.7E-23 124.6 10.2 121 39-199 3-124 (128)
46 3lqn_A CBS domain protein; csg 99.8 9.6E-19 3.3E-23 129.3 8.8 118 139-258 12-134 (150)
47 3jtf_A Magnesium and cobalt ef 99.8 6.3E-19 2.1E-23 127.0 7.6 112 141-258 4-117 (129)
48 3jtf_A Magnesium and cobalt ef 99.8 1.5E-18 5E-23 125.1 9.5 119 39-201 3-126 (129)
49 2p9m_A Hypothetical protein MJ 99.8 3.6E-18 1.2E-22 124.4 11.5 116 139-258 5-127 (138)
50 1pvm_A Conserved hypothetical 99.8 4.3E-18 1.5E-22 130.2 12.3 116 141-258 8-124 (184)
51 3k6e_A CBS domain protein; str 99.8 3.9E-18 1.3E-22 126.9 11.6 125 40-201 14-142 (156)
52 3oi8_A Uncharacterized protein 99.8 7.3E-19 2.5E-23 130.9 7.2 115 139-258 35-151 (156)
53 3ocm_A Putative membrane prote 99.8 3.3E-18 1.1E-22 129.5 10.8 114 139-258 33-148 (173)
54 2nyc_A Nuclear protein SNF4; b 99.8 3.5E-18 1.2E-22 125.2 10.6 116 141-258 7-132 (144)
55 2o16_A Acetoin utilization pro 99.8 4.1E-18 1.4E-22 127.4 11.2 115 141-258 4-126 (160)
56 3oco_A Hemolysin-like protein 99.8 3.6E-18 1.2E-22 126.7 10.7 123 37-202 16-144 (153)
57 4fry_A Putative signal-transdu 99.8 1.4E-18 4.7E-23 129.5 8.4 115 143-258 8-126 (157)
58 2rc3_A CBS domain; in SITU pro 99.8 1E-17 3.5E-22 121.5 12.7 122 42-201 7-131 (135)
59 3nqr_A Magnesium and cobalt ef 99.8 9E-19 3.1E-23 125.8 6.6 119 40-200 2-125 (127)
60 2o16_A Acetoin utilization pro 99.8 1.5E-17 5.1E-22 124.3 13.4 130 40-200 4-134 (160)
61 3kxr_A Magnesium transporter, 99.8 1E-17 3.6E-22 130.1 12.8 124 34-202 47-175 (205)
62 4fry_A Putative signal-transdu 99.8 1.3E-17 4.6E-22 124.1 12.6 137 41-216 7-149 (157)
63 1o50_A CBS domain-containing p 99.8 6.3E-18 2.1E-22 125.9 10.7 117 139-258 13-144 (157)
64 1o50_A CBS domain-containing p 99.8 1.4E-17 4.8E-22 124.0 12.6 141 36-201 11-153 (157)
65 3hf7_A Uncharacterized CBS-dom 99.8 9.2E-18 3.1E-22 121.1 11.2 121 41-201 2-127 (130)
66 4gqw_A CBS domain-containing p 99.8 2.9E-18 1E-22 126.7 8.7 118 141-258 4-134 (152)
67 2yzi_A Hypothetical protein PH 99.7 1.9E-17 6.4E-22 120.5 12.8 124 37-200 3-128 (138)
68 3fv6_A YQZB protein; CBS domai 99.7 2.6E-17 8.8E-22 122.9 13.7 126 38-201 14-144 (159)
69 2rih_A Conserved protein with 99.7 2.4E-17 8.4E-22 120.4 13.2 118 40-198 4-125 (141)
70 3lfr_A Putative metal ION tran 99.7 2E-18 6.9E-23 125.5 7.1 121 40-201 2-127 (136)
71 2uv4_A 5'-AMP-activated protei 99.7 1.5E-17 5.3E-22 123.1 11.7 115 140-258 21-142 (152)
72 2p9m_A Hypothetical protein MJ 99.7 1.3E-17 4.3E-22 121.4 10.7 123 38-200 5-135 (138)
73 3sl7_A CBS domain-containing p 99.7 2E-18 6.7E-23 131.4 6.2 117 142-258 4-147 (180)
74 3kxr_A Magnesium transporter, 99.7 2.9E-17 9.8E-22 127.7 12.9 111 139-258 51-165 (205)
75 2pfi_A Chloride channel protei 99.7 3.3E-17 1.1E-21 122.7 12.6 132 37-201 9-147 (164)
76 2emq_A Hypothetical conserved 99.7 1.7E-17 5.8E-22 123.5 10.8 118 139-258 8-130 (157)
77 3lqn_A CBS domain protein; csg 99.7 1.8E-17 6.1E-22 122.4 10.5 128 38-201 12-143 (150)
78 3oi8_A Uncharacterized protein 99.7 3.1E-18 1E-22 127.5 6.1 119 35-196 32-155 (156)
79 2d4z_A Chloride channel protei 99.7 2.4E-16 8.1E-21 125.6 17.2 160 37-199 9-244 (250)
80 4gqw_A CBS domain-containing p 99.7 2.3E-17 7.7E-22 121.9 10.5 137 40-202 4-144 (152)
81 3k2v_A Putative D-arabinose 5- 99.7 4.3E-17 1.5E-21 120.3 11.9 118 40-196 27-147 (149)
82 1yav_A Hypothetical protein BS 99.7 1.2E-17 4E-22 124.7 8.2 118 139-258 11-133 (159)
83 2j9l_A Chloride channel protei 99.7 2.2E-17 7.7E-22 126.1 9.8 119 139-258 8-156 (185)
84 2nyc_A Nuclear protein SNF4; b 99.7 4.5E-17 1.5E-21 119.2 10.6 128 38-201 5-141 (144)
85 2emq_A Hypothetical conserved 99.7 1E-16 3.4E-21 119.3 12.6 130 37-202 7-140 (157)
86 3ctu_A CBS domain protein; str 99.7 9.5E-17 3.2E-21 119.3 11.6 128 38-202 12-143 (156)
87 2j9l_A Chloride channel protei 99.7 1.4E-16 4.7E-21 121.7 12.7 150 38-202 8-166 (185)
88 1y5h_A Hypothetical protein RV 99.7 2.1E-17 7.2E-22 119.5 7.7 121 40-198 7-128 (133)
89 3sl7_A CBS domain-containing p 99.7 2.5E-17 8.5E-22 125.3 8.5 150 40-201 3-156 (180)
90 1pvm_A Conserved hypothetical 99.7 2.8E-16 9.6E-21 120.1 12.8 120 40-197 8-129 (184)
91 2pfi_A Chloride channel protei 99.7 8.6E-17 2.9E-21 120.4 9.6 116 140-258 11-138 (164)
92 1yav_A Hypothetical protein BS 99.7 1.2E-16 4.2E-21 119.1 9.9 129 37-201 10-142 (159)
93 1vr9_A CBS domain protein/ACT 99.7 2.2E-16 7.4E-21 123.5 11.5 109 141-258 12-121 (213)
94 2uv4_A 5'-AMP-activated protei 99.7 3.3E-16 1.1E-20 115.9 11.4 125 37-199 19-149 (152)
95 2oux_A Magnesium transporter; 99.7 2.4E-16 8.3E-21 128.7 11.2 123 34-201 130-259 (286)
96 2yvy_A MGTE, Mg2+ transporter 99.7 6.8E-16 2.3E-20 125.6 12.6 121 36-201 130-257 (278)
97 2yvy_A MGTE, Mg2+ transporter 99.7 4.6E-16 1.6E-20 126.6 11.3 110 140-258 133-248 (278)
98 2oux_A Magnesium transporter; 99.7 2.3E-16 8E-21 128.8 8.9 110 140-258 135-250 (286)
99 2d4z_A Chloride channel protei 99.6 6.3E-16 2.1E-20 123.2 10.3 117 140-259 11-238 (250)
100 3org_A CMCLC; transporter, tra 99.6 7.3E-16 2.5E-20 138.6 6.7 119 140-259 451-617 (632)
101 2zy9_A Mg2+ transporter MGTE; 99.6 8.8E-15 3E-19 127.2 12.6 123 34-201 148-277 (473)
102 3pc3_A CG1753, isoform A; CBS, 99.6 7.6E-15 2.6E-19 129.5 11.4 124 38-202 381-512 (527)
103 2zy9_A Mg2+ transporter MGTE; 99.6 6.9E-15 2.4E-19 127.9 10.8 112 139-259 152-269 (473)
104 3pc3_A CG1753, isoform A; CBS, 99.6 5.4E-15 1.8E-19 130.5 9.8 113 141-258 383-502 (527)
105 3org_A CMCLC; transporter, tra 99.5 1.3E-14 4.3E-19 130.6 8.5 156 39-196 451-620 (632)
106 3usb_A Inosine-5'-monophosphat 99.5 6E-14 2.1E-18 122.7 11.2 159 43-250 115-279 (511)
107 3usb_A Inosine-5'-monophosphat 99.5 6.4E-14 2.2E-18 122.6 10.9 107 144-258 115-225 (511)
108 4fxs_A Inosine-5'-monophosphat 99.5 1.6E-14 5.5E-19 125.9 6.5 108 144-259 91-201 (496)
109 3ghd_A A cystathionine beta-sy 99.5 1.3E-13 4.3E-18 87.7 8.1 69 154-222 2-70 (70)
110 3l2b_A Probable manganase-depe 99.5 3E-13 1E-17 107.8 12.3 168 1-197 33-240 (245)
111 4af0_A Inosine-5'-monophosphat 99.5 2.4E-15 8.2E-20 128.7 -2.4 101 152-259 146-250 (556)
112 1me8_A Inosine-5'-monophosphat 99.4 2.3E-14 8E-19 125.4 2.9 163 43-251 98-266 (503)
113 4avf_A Inosine-5'-monophosphat 99.4 1E-14 3.5E-19 127.0 0.3 108 144-259 90-199 (490)
114 1zfj_A Inosine monophosphate d 99.4 8.5E-13 2.9E-17 115.6 12.0 107 144-258 92-202 (491)
115 1me8_A Inosine-5'-monophosphat 99.4 1.1E-14 3.8E-19 127.4 -0.3 105 148-259 103-213 (503)
116 4fxs_A Inosine-5'-monophosphat 99.4 3.4E-13 1.2E-17 117.5 7.8 115 41-197 89-205 (496)
117 1vrd_A Inosine-5'-monophosphat 99.4 2.4E-14 8.1E-19 125.5 0.2 108 144-259 97-207 (494)
118 1zfj_A Inosine monophosphate d 99.4 1.3E-11 4.5E-16 108.1 16.0 116 42-200 91-210 (491)
119 4avf_A Inosine-5'-monophosphat 99.4 3E-13 1E-17 117.9 5.2 116 41-198 88-204 (490)
120 1jcn_A Inosine monophosphate d 99.3 8.4E-14 2.9E-18 122.5 -0.4 111 143-259 109-225 (514)
121 1vrd_A Inosine-5'-monophosphat 99.3 6.2E-13 2.1E-17 116.5 4.8 156 42-245 96-255 (494)
122 2cu0_A Inosine-5'-monophosphat 99.3 3.8E-13 1.3E-17 117.4 0.3 105 145-259 96-200 (486)
123 4af0_A Inosine-5'-monophosphat 99.3 1.8E-12 6.3E-17 111.1 3.9 109 44-197 141-254 (556)
124 2cu0_A Inosine-5'-monophosphat 99.3 8.9E-13 3E-17 115.1 1.4 157 43-254 95-255 (486)
125 1jcn_A Inosine monophosphate d 99.2 1E-12 3.5E-17 115.6 -0.3 116 42-197 109-229 (514)
126 3fio_A A cystathionine beta-sy 99.2 1E-10 3.5E-15 74.2 8.1 69 154-222 2-70 (70)
127 3ghd_A A cystathionine beta-sy 99.1 1.4E-10 4.6E-15 73.5 4.6 46 50-95 1-46 (70)
128 3fio_A A cystathionine beta-sy 98.5 2.8E-07 9.5E-12 58.0 7.1 46 50-95 1-46 (70)
129 1tif_A IF3-N, translation init 68.9 11 0.00036 23.6 4.7 32 5-36 12-43 (78)
130 1p0z_A Sensor kinase CITA; tra 44.9 14 0.00049 25.1 2.6 26 162-187 36-63 (131)
131 3by8_A Sensor protein DCUS; hi 44.0 15 0.0005 25.5 2.6 26 161-186 41-68 (142)
132 1tif_A IF3-N, translation init 42.2 45 0.0016 20.7 4.3 31 175-205 13-44 (78)
133 3tjo_A Serine protease HTRA1; 35.0 20 0.00069 27.3 2.3 20 239-258 187-206 (231)
134 2w5e_A Putative serine proteas 33.8 25 0.00086 25.2 2.5 23 236-258 122-144 (163)
135 3lgi_A Protease DEGS; stress-s 32.8 22 0.00074 27.2 2.1 22 237-258 172-193 (237)
136 1svj_A Potassium-transporting 30.8 55 0.0019 23.2 3.9 34 163-196 121-154 (156)
137 3fan_A Non-structural protein; 29.6 23 0.0008 26.6 1.7 24 4-27 124-147 (213)
138 3lgi_A Protease DEGS; stress-s 29.4 29 0.001 26.4 2.4 22 3-24 172-193 (237)
139 3sti_A Protease DEGQ; serine p 29.1 29 0.00098 26.8 2.3 21 238-258 184-204 (245)
140 1svj_A Potassium-transporting 27.1 51 0.0017 23.4 3.1 33 60-92 121-153 (156)
141 2qkp_A Uncharacterized protein 25.6 34 0.0012 23.9 2.0 16 241-256 109-124 (151)
142 2as9_A Serine protease; trypsi 25.5 39 0.0013 25.1 2.4 21 238-258 155-175 (210)
143 2vid_A Serine protease SPLB; h 25.2 38 0.0013 24.7 2.3 20 239-258 155-174 (204)
144 1qtf_A Exfoliative toxin B; se 25.2 38 0.0013 25.9 2.3 22 237-258 182-203 (246)
145 3fan_A Non-structural protein; 24.9 43 0.0015 25.2 2.4 21 238-258 124-144 (213)
146 3k6y_A Serine protease, possib 24.8 43 0.0015 25.3 2.6 21 238-258 180-200 (237)
147 2w7s_A Serine protease SPLA; h 22.8 51 0.0017 24.0 2.6 21 238-258 151-171 (200)
148 3sti_A Protease DEGQ; serine p 21.8 48 0.0016 25.5 2.3 22 4-25 184-205 (245)
149 1pm3_A MTH1895; unknown functi 21.5 35 0.0012 22.1 1.2 26 232-257 18-44 (97)
150 1agj_A Epidermolytic toxin A; 21.4 47 0.0016 25.1 2.2 21 238-258 192-212 (242)
151 1l1j_A Heat shock protease HTR 21.4 43 0.0015 25.6 1.9 22 237-258 179-200 (239)
No 1
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=100.00 E-value=3.3e-33 Score=228.24 Aligned_cols=218 Identities=19% Similarity=0.234 Sum_probs=183.5
Q ss_pred CCCCCcCEEEEEcC-CCeEEEEEehhHHHHHHHH-------hcC------CCCcccccccccCCCeEEeCcchHHHHHHH
Q 025005 1 MAARRVDALLLTDS-NALLCGILTDKDIATRVIA-------REL------NLEETPVSKVMTRNPTFVLSDTLAVEALQK 66 (259)
Q Consensus 1 m~~~~~~~~~v~~~-~~~~~g~~t~~di~~~~~~-------~~~------~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~ 66 (259)
|.+++++++||+++ +++++|++|..|+++.+.. ... ...+.+++++|.++++++++++++.+|++.
T Consensus 30 m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~ 109 (280)
T 3kh5_A 30 MNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIET 109 (280)
T ss_dssp HHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBCSCCCEETTCBHHHHHHH
T ss_pred HHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHHhcCCCCEEECCCCCHHHHHHH
Confidence 56789999999997 7899999999999864411 000 112568999999999999999999999999
Q ss_pred HHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcc
Q 025005 67 MVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLS 145 (259)
Q Consensus 67 ~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 145 (259)
|.+++++++||+| +|+++|+++..|++..+.. ......+++
T Consensus 110 ~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~--------------------------------------~~~~~~~v~ 151 (280)
T 3kh5_A 110 FLTKNVGGAPIVNDENQLISLITERDVIRALLD--------------------------------------KIDENEVID 151 (280)
T ss_dssp HHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGG--------------------------------------GSCTTCBSG
T ss_pred HHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhh--------------------------------------cCCCCCCHH
Confidence 9999999999998 6999999999999865221 011234688
Q ss_pred cccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcC----------CCCccccccccc
Q 025005 146 TIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQN----------LPADSTLVEKVM 215 (259)
Q Consensus 146 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~----------~~~~~~~v~~~~ 215 (259)
++|. +++.++++++++.++++.|.+.+.+.+||+++|+++|++|.+|+++.+.... ......+++++|
T Consensus 152 ~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m 229 (280)
T 3kh5_A 152 DYIT--RDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIM 229 (280)
T ss_dssp GGCB--CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHHS
T ss_pred HHhC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHHh
Confidence 8887 6799999999999999999999999999999999999999999985543211 001247899999
Q ss_pred CCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.+++.++++++++.+|++.|.+++++++||+|++|+++|+||+
T Consensus 230 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~ 272 (280)
T 3kh5_A 230 KRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITE 272 (280)
T ss_dssp BSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEH
T ss_pred cCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeH
Confidence 9999999999999999999999999999999999999999997
No 2
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=100.00 E-value=1.3e-32 Score=226.74 Aligned_cols=215 Identities=20% Similarity=0.209 Sum_probs=183.1
Q ss_pred CCCCCcCEEEEEcCCCeEEEEEehhHHHHHHHHhc---------CCCCcccccccccCCCeEEeCcchHHHHHHHHHhCC
Q 025005 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARE---------LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGK 71 (259)
Q Consensus 1 m~~~~~~~~~v~~~~~~~~g~~t~~di~~~~~~~~---------~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~ 71 (259)
|.+++++++||++ ++++|++|..||++.+.... ....+.+++++|.++++++.+++++.+|++.|.+++
T Consensus 46 m~~~~~~~~~V~d--~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~ 123 (296)
T 3ddj_A 46 INEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRN 123 (296)
T ss_dssp TTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHT
T ss_pred HHHCCCceEEEEC--CeEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcC
Confidence 7889999999999 89999999999986542110 112367899999999999999999999999999999
Q ss_pred ccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCC
Q 025005 72 FRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPE 150 (259)
Q Consensus 72 ~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 150 (259)
++++||+| +|+++|+++..|++..+. ......+++++|.
T Consensus 124 ~~~lpVvd~~~~lvGivt~~dl~~~~~---------------------------------------~~~~~~~v~~~m~- 163 (296)
T 3ddj_A 124 FGSLPVVDINDKPVGIVTEREFLLLYK---------------------------------------DLDEIFPVKVFMS- 163 (296)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHGGGGG---------------------------------------GSCCCCBHHHHSB-
T ss_pred CCEEEEEcCCCcEEEEEeHHHHHHhhh---------------------------------------cccccccHHHhhc-
Confidence 99999998 689999999999986411 0122346778886
Q ss_pred CCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcC-----CCCcccccccccCCCCceecC
Q 025005 151 KSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN-----LPADSTLVEKVMTPNPECATI 224 (259)
Q Consensus 151 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~-----~~~~~~~v~~~~~~~~~~v~~ 224 (259)
+++.++.+++++.++++.|.+.+.+++||+| +|+++|++|..|+++.+.... ......+++++|.+++.++.+
T Consensus 164 -~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~ 242 (296)
T 3ddj_A 164 -TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDE 242 (296)
T ss_dssp -CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBCCCCBCCT
T ss_pred -CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHhCCCCeEECC
Confidence 6799999999999999999999999999999 999999999999986554211 011247899999999999999
Q ss_pred CCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 225 DTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 225 ~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++++.+|++.|.+++.+++||+|++|+++|+||+
T Consensus 243 ~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~ 276 (296)
T 3ddj_A 243 LASVNRAAAEMIVKRIGSLLILNKDNTIRGIITE 276 (296)
T ss_dssp TSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred CCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcH
Confidence 9999999999999999999999999999999997
No 3
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.98 E-value=1.5e-31 Score=218.76 Aligned_cols=213 Identities=18% Similarity=0.204 Sum_probs=169.5
Q ss_pred CCCCCcCEEEEEcCCCeEEEEEehhHHHHHHHHhcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-
Q 025005 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE- 79 (259)
Q Consensus 1 m~~~~~~~~~v~~~~~~~~g~~t~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d- 79 (259)
|.+++++.+||++++|+++|++|..|+++. +.+.+++++|.+++.++++++++.+|++.|.+++.+.+||+|
T Consensus 27 ~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~-------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~ 99 (282)
T 2yzq_A 27 FKKYKVRSFPVVNKEGKLVGIISVKRILVN-------PDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS 99 (282)
T ss_dssp -----CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred HHHcCCCeEEEEcCCCcEEEEEEHHHHHhh-------hccCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 567899999999988999999999999743 236789999999999999999999999999999999999999
Q ss_pred CCeEEEEEeHHHHHH-HHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeC
Q 025005 80 NGEVIALLDIAKCLY-DAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTIS 158 (259)
Q Consensus 80 ~~~~vGvi~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~ 158 (259)
+|+++|+++..|++. .+... ......+++++|. +++.+++
T Consensus 100 ~~~~~Giit~~di~~~~~~~~-------------------------------------~~~~~~~v~~~m~--~~~~~v~ 140 (282)
T 2yzq_A 100 KGKPVGILTVGDIIRRYFAKS-------------------------------------EKYKGVEIEPYYQ--RYVSIVW 140 (282)
T ss_dssp TSCEEEEEEHHHHHHHTTTTC-------------------------------------SGGGGCBSTTTSB--SCCCCEE
T ss_pred CCEEEEEEEHHHHHHHHHhcc-------------------------------------CCcccCcHHHHhC--CCCEEEC
Confidence 589999999999986 41100 0012446788886 6789999
Q ss_pred CCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH------HHHH------hc-----------------CCCCcc
Q 025005 159 PTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL------MRVI------SQ-----------------NLPADS 208 (259)
Q Consensus 159 ~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~------~~~~------~~-----------------~~~~~~ 208 (259)
++.++.++++.|.+++.+++||++ +|+++|++|..|++ +.+. .. ......
T Consensus 141 ~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (282)
T 2yzq_A 141 EGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPN 220 (282)
T ss_dssp TTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------------------CC
T ss_pred CCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhcc
Confidence 999999999999999999999999 89999999999997 3221 00 011235
Q ss_pred cccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 209 TLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 209 ~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
.+++++|.+++.++.+++++.+|+++|.+++++++||+|++|+++|+||++
T Consensus 221 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~ 271 (282)
T 2yzq_A 221 KPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDF 271 (282)
T ss_dssp CBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHH
T ss_pred CCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHH
Confidence 789999999999999999999999999999999999999888999999973
No 4
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.97 E-value=2.4e-31 Score=221.75 Aligned_cols=222 Identities=14% Similarity=0.140 Sum_probs=176.7
Q ss_pred CCCCCcCEEEEEcCC-CeEEEEEehhHHHHHHHHh---cC------CCCcccc------cccccCCCeEEeCcchHHHHH
Q 025005 1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIAR---EL------NLEETPV------SKVMTRNPTFVLSDTLAVEAL 64 (259)
Q Consensus 1 m~~~~~~~~~v~~~~-~~~~g~~t~~di~~~~~~~---~~------~~~~~~v------~~~~~~~~~~v~~~~~l~~a~ 64 (259)
|.+++++++||++++ ++++|++|..|++..+... .. .+....+ .++|.++++++++++++.+|+
T Consensus 58 m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~ 137 (323)
T 3t4n_C 58 LLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEAC 137 (323)
T ss_dssp HHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHH
T ss_pred HHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHH
Confidence 567899999999975 4999999999998655321 10 1111223 334578899999999999999
Q ss_pred HHHHhCCccEeeEee-CCe-----EEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHh
Q 025005 65 QKMVQGKFRHLPVVE-NGE-----VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRER 138 (259)
Q Consensus 65 ~~~~~~~~~~~pV~d-~~~-----~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (259)
+.|.+++++++||+| ++. ++|+++..|++..+...... ..
T Consensus 138 ~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~----------------------------------~~ 183 (323)
T 3t4n_C 138 LKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE----------------------------------TH 183 (323)
T ss_dssp HHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG----------------------------------GG
T ss_pred HHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc----------------------------------hh
Confidence 999999999999998 453 99999999999864322100 11
Q ss_pred hcCCCcccc---cCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccc
Q 025005 139 MFRPSLSTI---IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV 214 (259)
Q Consensus 139 ~~~~~v~~~---~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~ 214 (259)
....+++++ |. +++.++.+++++.++++.|.+++++++||+| +|+++|++|.+|+++.+..........+++++
T Consensus 184 ~~~~~v~~~~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~ 261 (323)
T 3t4n_C 184 FLKIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEA 261 (323)
T ss_dssp GCCSBGGGTTCSBC--TTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTTSBHHHH
T ss_pred hhhCcHHHcCCCCC--CCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhccCCHHHH
Confidence 334567888 75 6799999999999999999999999999999 89999999999998554432212335789999
Q ss_pred cCC------CCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 215 MTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 215 ~~~------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
|.+ ++.++++++++.+|++.|.+++++++||+|++|+++|+||+
T Consensus 262 m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~ 311 (323)
T 3t4n_C 262 LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTL 311 (323)
T ss_dssp GGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEH
T ss_pred HhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEH
Confidence 997 78999999999999999999999999999999999999996
No 5
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.97 E-value=1.6e-29 Score=211.68 Aligned_cols=222 Identities=15% Similarity=0.158 Sum_probs=176.8
Q ss_pred CCCCCcCEEEEEcCC-CeEEEEEehhHHHHHHHHh------cC---CCCcccccc-------cccCCC--eEEeCcchHH
Q 025005 1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIAR------EL---NLEETPVSK-------VMTRNP--TFVLSDTLAV 61 (259)
Q Consensus 1 m~~~~~~~~~v~~~~-~~~~g~~t~~di~~~~~~~------~~---~~~~~~v~~-------~~~~~~--~~v~~~~~l~ 61 (259)
|.+++++++||++++ ++++|++|..|++..+... .. .+...++.. +|.+++ +++.++.++.
T Consensus 50 ~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~ 129 (334)
T 2qrd_G 50 LTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLM 129 (334)
T ss_dssp HHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHH
T ss_pred HHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHH
Confidence 456789999999976 7999999999998655321 11 111333333 366666 9999999999
Q ss_pred HHHHHHHhCCccEeeEeeC--Ce----EEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHH
Q 025005 62 EALQKMVQGKFRHLPVVEN--GE----VIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETL 135 (259)
Q Consensus 62 ~a~~~~~~~~~~~~pV~d~--~~----~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (259)
+|++.|.+++++++||+|+ ++ ++|+++..|++..+.....
T Consensus 130 ~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~---------------------------------- 175 (334)
T 2qrd_G 130 DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK---------------------------------- 175 (334)
T ss_dssp HHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG----------------------------------
T ss_pred HHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc----------------------------------
Confidence 9999999999999999983 34 9999999999876432100
Q ss_pred HHhhcCCCcccc---cCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCccccc
Q 025005 136 RERMFRPSLSTI---IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLV 211 (259)
Q Consensus 136 ~~~~~~~~v~~~---~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v 211 (259)
.......+++++ |. +++.++.+++++.++++.|.+++.+++||+| +|+++|++|.+|+++.+..........++
T Consensus 176 ~~~~~~~~v~~l~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v 253 (334)
T 2qrd_G 176 ETAMLRVPLNQMTIGTW--SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSV 253 (334)
T ss_dssp GGGGCCCBGGGSSCSBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGGGSBH
T ss_pred chhhhhCcHHHhCCccc--CCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccccccccCcH
Confidence 000124456774 65 6789999999999999999999999999999 89999999999998544332222345788
Q ss_pred ccccCC------CCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 212 EKVMTP------NPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 212 ~~~~~~------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++|.+ ++.++.+++++.+|++.|.+++.+++||||++|+++|+||+
T Consensus 254 ~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~ 306 (334)
T 2qrd_G 254 GEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSL 306 (334)
T ss_dssp HHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEH
T ss_pred HHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeH
Confidence 999984 78999999999999999999999999999999999999996
No 6
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.96 E-value=6e-29 Score=207.85 Aligned_cols=226 Identities=17% Similarity=0.181 Sum_probs=175.9
Q ss_pred CCCCCcCEEEEEcCC-CeEEEEEehhHHHHHHHHhc-------CCCCccc-------ccccccCCCeEEeCcchHHHHHH
Q 025005 1 MAARRVDALLLTDSN-ALLCGILTDKDIATRVIARE-------LNLEETP-------VSKVMTRNPTFVLSDTLAVEALQ 65 (259)
Q Consensus 1 m~~~~~~~~~v~~~~-~~~~g~~t~~di~~~~~~~~-------~~~~~~~-------v~~~~~~~~~~v~~~~~l~~a~~ 65 (259)
|.+++++++||++++ ++++|++|..|+++.+.... ..+...+ ++++|.++++++.++.++.+|++
T Consensus 63 ~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~ 142 (330)
T 2v8q_E 63 LVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVS 142 (330)
T ss_dssp HHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHH
T ss_pred HHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHH
Confidence 456789999999986 78999999999986554311 1111222 34678899999999999999999
Q ss_pred HHHhCCccEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCC
Q 025005 66 KMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPS 143 (259)
Q Consensus 66 ~~~~~~~~~~pV~d--~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (259)
.|.+++++++||+| +|+++|+++..|++..+...... .. .. .....+
T Consensus 143 ~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~--------------------~~-~~----------~~~~~~ 191 (330)
T 2v8q_E 143 SLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE--------------------FP-KP----------EFMSKS 191 (330)
T ss_dssp HHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCS--------------------SS-CC----------GGGGSB
T ss_pred HHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhc--------------------cC-ch----------hhhcCC
Confidence 99999999999998 58999999999998764321000 00 00 001122
Q ss_pred cccc--cCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCccccccccc-----
Q 025005 144 LSTI--IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVM----- 215 (259)
Q Consensus 144 v~~~--~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~----- 215 (259)
++++ |. .+++.++.+++++.++++.|.+.+.+++||++ +|+++|++|..|+++.+..........+++++|
T Consensus 192 v~~~~v~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~~~ 270 (330)
T 2v8q_E 192 LEELQIGT-YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSH 270 (330)
T ss_dssp HHHHTCSB-CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCS
T ss_pred HHHhcccC-cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhcccc
Confidence 3333 32 15688999999999999999999999999999 899999999999985443332222357888888
Q ss_pred -CCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 216 -TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 216 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.+++.++++++++.+|++.|.+++.+++||+|++|+++|+||+
T Consensus 271 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~ 314 (330)
T 2v8q_E 271 YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSL 314 (330)
T ss_dssp CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred ccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeH
Confidence 4788999999999999999999999999999988999999996
No 7
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.94 E-value=4e-26 Score=187.89 Aligned_cols=192 Identities=18% Similarity=0.248 Sum_probs=160.4
Q ss_pred hcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHH
Q 025005 34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113 (259)
Q Consensus 34 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~ 113 (259)
...+....+|+|+|+++++++++++++.+|++.|.+++++++||+| ++++|+++..|++..+.....
T Consensus 13 ~~~~~~~~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-~~l~GivT~~Di~~~~~~~~~------------ 79 (296)
T 3ddj_A 13 ENLYFQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-EKIEGLLTTRDLLSTVESYCK------------ 79 (296)
T ss_dssp -CCTTCCSSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-SSEEEEEEHHHHHGGGTTCC-------------
T ss_pred hhhhhcccCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-CeEEEEEeHHHHHHHhccccc------------
Confidence 4556778999999999999999999999999999999999999999 999999999999975321000
Q ss_pred hhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeeh
Q 025005 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS 192 (259)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~ 192 (259)
. ......+. .....+++++|. +++.++.+++++.++++.|.+++++++||+| +|+++|++|.
T Consensus 80 -------------~-~~~~~~~~-~~~~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~ 142 (296)
T 3ddj_A 80 -------------D-SCSQGDLY-HISTTPIIDYMT--PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTE 142 (296)
T ss_dssp ----------------CCHHHHH-HHHTSBGGGTSE--ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred -------------c-cccchhhH-HHhcccHHHhcc--CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeH
Confidence 0 00011111 123567899998 6789999999999999999999999999998 8999999999
Q ss_pred HHHHHHHHhcCCCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 193 KDILMRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 193 ~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+|+++ .+.... ...+++++|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||+
T Consensus 143 ~dl~~-~~~~~~--~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~ 205 (296)
T 3ddj_A 143 REFLL-LYKDLD--EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTV 205 (296)
T ss_dssp HHHGG-GGGGSC--CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred HHHHH-hhhccc--ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEH
Confidence 99974 333322 2468999999999999999999999999999999999999999999999996
No 8
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.93 E-value=1.7e-25 Score=182.66 Aligned_cols=172 Identities=26% Similarity=0.337 Sum_probs=134.7
Q ss_pred cccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccc
Q 025005 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120 (259)
Q Consensus 42 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (259)
+++++|.++++++++++++.+|++.|.+++++++||+| +|+++|+++..|++...
T Consensus 2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~~~~~Giv~~~dl~~~~------------------------ 57 (282)
T 2yzq_A 2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP------------------------ 57 (282)
T ss_dssp BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC----------------------------
T ss_pred chHHhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhhh------------------------
Confidence 68899999999999999999999999999999999999 79999999999987531
Q ss_pred cCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHH
Q 025005 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (259)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~ 199 (259)
...+++++|. +++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|+++..
T Consensus 58 -------------------~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~ 116 (282)
T 2yzq_A 58 -------------------DEEQLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY 116 (282)
T ss_dssp -------------------------CCCB--SCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred -------------------ccCCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHH
Confidence 1245778887 5688999999999999999999999999999 78999999999998524
Q ss_pred HhcCCCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 200 ISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 200 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+..+......+++++|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||+
T Consensus 117 ~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~ 175 (282)
T 2yzq_A 117 FAKSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDE 175 (282)
T ss_dssp TTTCSGGGGCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEG
T ss_pred HhccCCcccCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEH
Confidence 43322223568899999899999999999999999999999999999989999999996
No 9
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.93 E-value=2e-24 Score=176.03 Aligned_cols=187 Identities=19% Similarity=0.253 Sum_probs=150.9
Q ss_pred cccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccc
Q 025005 44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW 121 (259)
Q Consensus 44 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d--~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (259)
..+|+++++++++++++.+|+++|.+++++++||+| +|+++|+++..|++..+.... ..... ....
T Consensus 7 ~~i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~-----~~~~~-------~~~~ 74 (280)
T 3kh5_A 7 KIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGS-----KYNLI-------REKH 74 (280)
T ss_dssp GTSCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSG-----GGHHH-------HTTS
T ss_pred HHhcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccc-----hhhhh-------hhcc
Confidence 446778999999999999999999999999999999 599999999999997531100 00000 0000
Q ss_pred CCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHH
Q 025005 122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVI 200 (259)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~ 200 (259)
... +. .....+++++|. +++.+++++.++.++++.|.+++++++||+| +|+++|++|.+|+++.+.
T Consensus 75 ------~~~----~~-~~~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 141 (280)
T 3kh5_A 75 ------ERN----FL-AAINEPVREIME--ENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALL 141 (280)
T ss_dssp ------TTC----HH-HHTTSBGGGTSB--CSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHG
T ss_pred ------ccc----hh-HHhhhhHHHhcC--CCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHh
Confidence 000 00 012567899998 6799999999999999999999999999999 899999999999985544
Q ss_pred hcCCCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 201 SQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 201 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.... ...+++++|.+++.++++++++.++++.|.+++.+++||+ ++|+++|+||+
T Consensus 142 ~~~~--~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~ 196 (280)
T 3kh5_A 142 DKID--ENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITS 196 (280)
T ss_dssp GGSC--TTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEH
T ss_pred hcCC--CCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEH
Confidence 3322 2358999999999999999999999999999999999999 58999999996
No 10
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.91 E-value=5.1e-23 Score=171.32 Aligned_cols=198 Identities=17% Similarity=0.227 Sum_probs=151.6
Q ss_pred CcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 025005 39 EETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (259)
Q Consensus 39 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~--~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (259)
.+.++.|+|.. ++++++.+.++.+|++.|.+++++++||+|+ ++++|+++..|++..+...+.... ..
T Consensus 28 ~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~-~~------- 99 (323)
T 3t4n_C 28 NSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPD-KF------- 99 (323)
T ss_dssp HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGG-GG-------
T ss_pred HhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcc-hh-------
Confidence 57899999975 6789999999999999999999999999993 699999999999986543221100 00
Q ss_pred hhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCe-----eeE
Q 025005 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENK-----PRG 188 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~-----~~G 188 (259)
..+.. . ....+.+.. ....+|. +++++++++.++.++++.|.+++++++||++ ++. ++|
T Consensus 100 ~~l~~-~---------~~~~v~~i~---~~~~~~~--~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~G 164 (323)
T 3t4n_C 100 ELVDK-L---------QLDGLKDIE---RALGVDQ--LDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVS 164 (323)
T ss_dssp GGGGG-C---------BHHHHHHHH---HHTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEE
T ss_pred HHHHH-H---------HHHHHHHHH---HHhCCCC--CCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEE
Confidence 00000 0 001111111 1234454 6788999999999999999999999999999 664 999
Q ss_pred EeehHHHHHHHHhcC--CCCcccccccc---cCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 189 ILTSKDILMRVISQN--LPADSTLVEKV---MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 189 iit~~di~~~~~~~~--~~~~~~~v~~~---~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++|.+|+++.+.... ......+++++ |.+++.++.+++++.+|++.|.+++++++||+|++|+++|+||++
T Consensus 165 ivt~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~ 240 (323)
T 3t4n_C 165 VLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAY 240 (323)
T ss_dssp EEEHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETT
T ss_pred EecHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHH
Confidence 999999986655332 22234688999 888999999999999999999999999999999999999999974
No 11
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.90 E-value=1.7e-23 Score=174.73 Aligned_cols=196 Identities=20% Similarity=0.171 Sum_probs=151.3
Q ss_pred cccccccc--cCCCeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 025005 40 ETPVSKVM--TRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (259)
Q Consensus 40 ~~~v~~~~--~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 115 (259)
+.+++++| .++++++++++++.+|++.|.+++++++||++ + ++++|+++..|++..+........ .
T Consensus 34 ~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~----------~ 103 (330)
T 2v8q_E 34 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL----------V 103 (330)
T ss_dssp HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT----------T
T ss_pred cCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc----------c
Confidence 57999999 77899999999999999999999999999999 4 789999999999976543221100 0
Q ss_pred hcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee--CCeeeEEeehH
Q 025005 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSK 193 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~g~~~Giit~~ 193 (259)
... .. . ........ .++.++|. +++.+++++.++.++++.|.+++.+++||++ +|+++|++|..
T Consensus 104 ----~~~-~l-~-~~~~~~~~-----~~~~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~ 169 (330)
T 2v8q_E 104 ----QIY-EL-E-EHKIETWR-----EVYLQDSF--KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHK 169 (330)
T ss_dssp ----TCC-CG-G-GCBHHHHH-----HHHSSSSC--CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHH
T ss_pred ----chh-HH-h-hccHHHHH-----HHHhhccc--CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHH
Confidence 000 00 0 00011111 12456676 6799999999999999999999999999999 68999999999
Q ss_pred HHHHHHHhcCCC-----Ccccccccc--cC-CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 194 DILMRVISQNLP-----ADSTLVEKV--MT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 194 di~~~~~~~~~~-----~~~~~v~~~--~~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
|+++.+...... ....+++++ |. +++.++.+++++.++++.|.+++.+++||+|++|+++|+||++
T Consensus 170 dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~ 243 (330)
T 2v8q_E 170 RILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKF 243 (330)
T ss_dssp HHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGG
T ss_pred HHHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHH
Confidence 998655443211 122445554 44 6889999999999999999999999999999899999999963
No 12
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.88 E-value=1.2e-21 Score=163.86 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=148.9
Q ss_pred cccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 025005 40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (259)
Q Consensus 40 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~--~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 115 (259)
+.++.++|++ +++++++++++.+|++.|.+++++++||+++ ++++|+++..|++..+...+....... ...
T Consensus 21 ~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~-----~~~ 95 (334)
T 2qrd_G 21 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPE-----AIA 95 (334)
T ss_dssp HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGG-----GGG
T ss_pred cCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCcc-----HHH
Confidence 5899999975 5788999999999999999999999999994 799999999999976543211000000 000
Q ss_pred hcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C-Ce----eeEE
Q 025005 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NK----PRGI 189 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~----~~Gi 189 (259)
... ......+.+.+ +++|.+..++.++.++.++.++++.|.+.+.+++||++ + ++ ++|+
T Consensus 96 ~~~----------~~~~~~i~~~l-----~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Gi 160 (334)
T 2qrd_G 96 EID----------KFRLLGLREVE-----RKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSV 160 (334)
T ss_dssp GGG----------SCBHHHHHHHH-----HHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEE
T ss_pred HHh----------hhchhhHHHHH-----HhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEE
Confidence 000 00011111111 23454222338999999999999999999999999998 4 44 9999
Q ss_pred eehHHHHHHHHhcC--CCCccccccc---ccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 190 LTSKDILMRVISQN--LPADSTLVEK---VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 190 it~~di~~~~~~~~--~~~~~~~v~~---~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+|..|+++.+.... ......++++ +|.+++.++++++++.+|++.|.+++.+++||+|++|+++|+||+
T Consensus 161 vt~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~ 234 (334)
T 2qrd_G 161 LTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYES 234 (334)
T ss_dssp EEHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEET
T ss_pred eeHHHHHHHHHhhccchhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEH
Confidence 99999986554321 1122467888 488899999999999999999999999999999988999999996
No 13
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.86 E-value=5.9e-22 Score=149.88 Aligned_cols=147 Identities=22% Similarity=0.306 Sum_probs=114.6
Q ss_pred CCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 38 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
+.+.+|+|+|+++++++++++++.+|++.|.+++++++||+| +|+++|+++..|+++............ .
T Consensus 15 l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~---------~ 85 (170)
T 4esy_A 15 IRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASE---------I 85 (170)
T ss_dssp HHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHH---------H
T ss_pred HcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhh---------h
Confidence 447899999999999999999999999999999999999998 699999999999986532211000000 0
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
. ....+..............+++++|+ +++.++++++++.+++++|.+++++++||+++|+++|+||.+|++
T Consensus 86 ~------~~~~~~~~~~~~~~~~~~~~v~~im~--~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil 157 (170)
T 4esy_A 86 L------SRAIPAPEVEHLFETGRKLTASAVMT--QPVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLL 157 (170)
T ss_dssp H------TTTSCHHHHHHHHHHHTTCBHHHHCB--CCSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHT
T ss_pred h------hhccchhhHHhhhccccccchhhhcc--cCcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHH
Confidence 0 00011112223334455678899998 789999999999999999999999999999999999999999998
Q ss_pred HHHHh
Q 025005 197 MRVIS 201 (259)
Q Consensus 197 ~~~~~ 201 (259)
+.++.
T Consensus 158 ~~l~~ 162 (170)
T 4esy_A 158 KLLLL 162 (170)
T ss_dssp TTSCC
T ss_pred HHHHh
Confidence 55543
No 14
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.83 E-value=2.4e-20 Score=138.98 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=103.4
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCC---ccccccccc
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPA---DSTLVEKVM 215 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~---~~~~v~~~~ 215 (259)
...+++++|.+..++.++.++.|+.+|+++|.+++++++||+| +|+++|++|.+|+++.+....... ...+++++|
T Consensus 13 l~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im 92 (156)
T 3k6e_A 13 LLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMT 92 (156)
T ss_dssp HHTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTC
T ss_pred hhccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhh
Confidence 3456889998778899999999999999999999999999999 899999999999987666554321 357899999
Q ss_pred CCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
.+++.++++++++.+|++.|.++++ +||||++|+++|+||++
T Consensus 93 ~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~ 134 (156)
T 3k6e_A 93 KTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRK 134 (156)
T ss_dssp BCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHH
T ss_pred cCCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHH
Confidence 9999999999999999999998764 99999999999999973
No 15
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.83 E-value=1e-19 Score=134.31 Aligned_cols=137 Identities=18% Similarity=0.336 Sum_probs=109.2
Q ss_pred EEEehhHHHHHHHHhcCCCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEeeC--CeEEEEEeHHHHHHH
Q 025005 20 GILTDKDIATRVIARELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYD 95 (259)
Q Consensus 20 g~~t~~di~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~--~~~vGvi~~~~i~~~ 95 (259)
|.++..+ +..+.....+.+.+++++|++ +++++++++++.+|++.|.+++++++||+|+ |+++|+++..|++..
T Consensus 4 g~l~~~e--~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~ 81 (148)
T 3lv9_A 4 GLIDESE--QRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQ 81 (148)
T ss_dssp ----------------CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHH
T ss_pred CccCHHH--HHHHHHHhccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence 5666555 344555567888999999998 9999999999999999999999999999994 899999999999876
Q ss_pred HHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCC
Q 025005 96 AIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRL 175 (259)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~ 175 (259)
.... ...+++++| +++.++++++++.++++.|.+++.
T Consensus 82 ~~~~----------------------------------------~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~ 118 (148)
T 3lv9_A 82 KINE----------------------------------------NKIELEEIL---RDIIYISENLTIDKALERIRKEKL 118 (148)
T ss_dssp HHHH----------------------------------------SCCCGGGTC---BCCEEEETTSBHHHHHHHHHHHTC
T ss_pred HhcC----------------------------------------CCccHHHhc---CCCeEECCCCCHHHHHHHHHhcCC
Confidence 3221 145688888 348899999999999999999999
Q ss_pred ceEEEee-CCeeeEEeehHHHHHHHHh
Q 025005 176 SSAVVTV-ENKPRGILTSKDILMRVIS 201 (259)
Q Consensus 176 ~~~~V~~-~g~~~Giit~~di~~~~~~ 201 (259)
+.+||+| +|+++|++|..|+++.++.
T Consensus 119 ~~l~Vvd~~g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 119 QLAIVVDEYGGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp SEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred eEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 9999999 7999999999999977654
No 16
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.83 E-value=8.3e-21 Score=143.55 Aligned_cols=120 Identities=23% Similarity=0.271 Sum_probs=103.5
Q ss_pred HHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcC-----------
Q 025005 136 RERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN----------- 203 (259)
Q Consensus 136 ~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~----------- 203 (259)
...+...+++++|+ ++++++.+++++.++++.|.+++++++||+| +|+++|++|.+|+++......
T Consensus 12 ~~~l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~ 89 (170)
T 4esy_A 12 ARAIRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRA 89 (170)
T ss_dssp HHHHHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTT
T ss_pred HHHHcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhc
Confidence 33456778999998 7899999999999999999999999999999 999999999999974322110
Q ss_pred ----------CCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 204 ----------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 204 ----------~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
......+++++|++++.++.+++++.+|+++|.+++++++||+| +|+++|+||+
T Consensus 90 ~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~ 153 (170)
T 4esy_A 90 IPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTR 153 (170)
T ss_dssp SCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEH
T ss_pred cchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEH
Confidence 00124688999999999999999999999999999999999999 6999999997
No 17
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.81 E-value=1.7e-19 Score=133.09 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=103.5
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccC
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+...+++++|.+..++.++++++++.++++.|.+++++++||++ + |+++|++|.+|+++.+.... ..+++++|
T Consensus 20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m- 94 (148)
T 3lv9_A 20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN----KIELEEIL- 94 (148)
T ss_dssp GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----CCCGGGTC-
T ss_pred cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC----CccHHHhc-
Confidence 45778999998434899999999999999999999999999999 5 89999999999986554443 47899999
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++.++++++++.+|++.|.+++.+.+||+|++|+++|+||+
T Consensus 95 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~ 136 (148)
T 3lv9_A 95 RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTI 136 (148)
T ss_dssp BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEH
T ss_pred CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEH
Confidence 789999999999999999999999999999999999999996
No 18
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.81 E-value=4.3e-19 Score=134.36 Aligned_cols=142 Identities=14% Similarity=0.246 Sum_probs=104.5
Q ss_pred CeEEEEEehhHHHHHHHHhcCCCCccccccccc--CCCeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHH
Q 025005 16 ALLCGILTDKDIATRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAK 91 (259)
Q Consensus 16 ~~~~g~~t~~di~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~ 91 (259)
+.-.|.++..+ +..+.....+.+.+++++|+ ++++++++++++.+|++.|.+++++++||++ + ++++|+++..|
T Consensus 19 ~~~~g~l~~~e--~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~d 96 (172)
T 3lhh_A 19 GSSAGVIEHNE--HAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQ 96 (172)
T ss_dssp --------------------------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHH
T ss_pred HHHcCCCCHHH--HHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHH
Confidence 34567777655 24444455788899999999 7889999999999999999999999999999 4 89999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHH
Q 025005 92 CLYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKML 171 (259)
Q Consensus 92 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~ 171 (259)
++..... -...+++++| +++.++.+++++.++++.|.
T Consensus 97 l~~~~~~----------------------------------------~~~~~v~~im---~~~~~v~~~~~l~~a~~~m~ 133 (172)
T 3lhh_A 97 LLSESIA----------------------------------------GERLELVDLV---KNCNFVPNSLSGMELLEHFR 133 (172)
T ss_dssp HHHHHHT----------------------------------------TCCCCGGGGC---BCCEEEETTCCHHHHHHHHH
T ss_pred HHHHHhh----------------------------------------cCcccHHHHh---cCCeEeCCCCCHHHHHHHHH
Confidence 9875221 1145688888 45889999999999999999
Q ss_pred HcCCceEEEee-CCeeeEEeehHHHHHHHHhc
Q 025005 172 ELRLSSAVVTV-ENKPRGILTSKDILMRVISQ 202 (259)
Q Consensus 172 ~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~ 202 (259)
+++.+.+||+| +|+++|++|..|+++.+...
T Consensus 134 ~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~ 165 (172)
T 3lhh_A 134 TTGSQMVFVVDEYGDLKGLVTLQDMMDALTGE 165 (172)
T ss_dssp HHTCSEEEEECTTSCEEEEEEHHHHHHHHHTT
T ss_pred HcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCC
Confidence 99999999999 79999999999999776653
No 19
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.80 E-value=1.3e-19 Score=130.74 Aligned_cols=116 Identities=13% Similarity=0.109 Sum_probs=99.9
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccC
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+...+++++|.+...++++++++++.++++.|.+++++++||++ + |+++|++|.+|+++.+.... ...+++++|.
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~---~~~~v~~~m~ 79 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS---GQKQLGAVMR 79 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT---TTSBHHHHSE
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC---CcCCHHHHhc
Confidence 34567999998656678999999999999999999999999999 5 89999999999985544332 2578999995
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++.++++++++.+|++.|.+++.+.+||+|++|+++|+||+
T Consensus 80 -~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~ 120 (130)
T 3i8n_A 80 -PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTL 120 (130)
T ss_dssp -ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEH
T ss_pred -CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEH
Confidence 68899999999999999999999999999999999999997
No 20
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.80 E-value=1.3e-18 Score=139.23 Aligned_cols=210 Identities=17% Similarity=0.180 Sum_probs=137.8
Q ss_pred cccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHH-----HhhhhHHHHHH
Q 025005 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMER-----AAEKGKAIAAA 113 (259)
Q Consensus 40 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~-----~~~~~~~~~~~ 113 (259)
..+++++|.++++++++++++.+|+++|.+++++++||+| +|+++|+++..|+++.+...... ...........
T Consensus 6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~~~ 85 (245)
T 3l2b_A 6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDT 85 (245)
T ss_dssp CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHHHH
T ss_pred cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHHHH
Confidence 6799999999999999999999999999999999999999 59999999999999876431100 00000000000
Q ss_pred hhhcccccCCCCCChhhHHHH-HHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCC--------
Q 025005 114 VEGVEKHWGTSISGPNTFIET-LRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN-------- 184 (259)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g-------- 184 (259)
..... ..+..... ..... ....+....+.+.+.+ .+++.+.. -.++...+.+.+.++++++++.
T Consensus 86 l~~~~-l~~~~~~~--~~~g~~~i~a~~~~~~~~~~~~-~~ivIvgd---r~~~~~~~i~~~~~~liit~~~~~~~~v~~ 158 (245)
T 3l2b_A 86 LSAEA-QNINEERK--VFPGKVVVAAMQAESLKEFISE-GDIAIAGD---RAEIQAELIELKVSLLIVTGGHTPSKEIIE 158 (245)
T ss_dssp TTCEE-EECCTTCC--CCCSCEEECCSCGGGGGGTCCT-TCEEEECS---CHHHHHHHHHTTCSEEEECTTCCCCHHHHH
T ss_pred hCCEE-EeccCCcc--eeeeeEEEEeCChHHHHhcCCC-CCEEEECC---CHHHHHHHHHcCCCEEEECCCCCCCHHHHH
Confidence 00000 00000000 00000 0000011122333432 45666644 3566777788999988888522
Q ss_pred -----eeeEEeehHHHHHHHHhcCCCCcccccccccC-CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 185 -----KPRGILTSKDILMRVISQNLPADSTLVEKVMT-PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 185 -----~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~-~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.+..+.|..|... ..... ....+++++|. +++.++++++++.+|+++|.+++++++||+|++|+++|+||+
T Consensus 159 ~a~~~~~~~i~t~~d~~~-~~~~~--~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~ 235 (245)
T 3l2b_A 159 LAKKNNITVITTPHDSFT-ASRLI--VQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIAR 235 (245)
T ss_dssp HHHHHTCEEEECSSCHHH-HHHHG--GGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEC
T ss_pred HHHHcCCeEEEeCCChHH-HHHHH--hcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEH
Confidence 2344666666542 22111 12468999999 899999999999999999999999999999999999999997
Q ss_pred C
Q 025005 259 K 259 (259)
Q Consensus 259 ~ 259 (259)
+
T Consensus 236 ~ 236 (245)
T 3l2b_A 236 F 236 (245)
T ss_dssp C
T ss_pred H
Confidence 4
No 21
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.80 E-value=6.8e-20 Score=132.35 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=99.0
Q ss_pred CcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee--CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCc
Q 025005 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220 (259)
Q Consensus 143 ~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 220 (259)
+++++|.+.+++.+++++.++.++++.|.+++++++||++ +|+++|++|.+|+++ .+..+......+++++| +++.
T Consensus 3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~-~~~~~~~~~~~~v~~~m-~~~~ 80 (130)
T 3hf7_A 3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR-LMTEKKEFTKEIMLRAA-DEIY 80 (130)
T ss_dssp BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHH-HHTSSSCCCHHHHHHHS-BCCC
T ss_pred CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHH-HHhccCccchhhHHHhc-cCCe
Confidence 4677886435789999999999999999999999999996 489999999999984 44443333346889999 5788
Q ss_pred eecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 221 CATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++++++++.+|++.|.+++.+.+||+|++|+++|+||+
T Consensus 81 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~ 118 (130)
T 3hf7_A 81 FVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTV 118 (130)
T ss_dssp EEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEH
T ss_pred EeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeH
Confidence 99999999999999999999999999999999999997
No 22
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.80 E-value=3.8e-19 Score=134.63 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=100.6
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccC
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+...+++++|.+.++++++++++++.++++.|.+++++++||++ + |+++|++|.+|+++.+... . ..+++++|
T Consensus 39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-~---~~~v~~im- 113 (172)
T 3lhh_A 39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG-E---RLELVDLV- 113 (172)
T ss_dssp ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT-C---CCCGGGGC-
T ss_pred cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc-C---cccHHHHh-
Confidence 45678999997545789999999999999999999999999999 5 9999999999998554433 2 47899999
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++.++++++++.+|++.|.+++.+.+||+|++|+++|+||+
T Consensus 114 ~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~ 155 (172)
T 3lhh_A 114 KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTL 155 (172)
T ss_dssp BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeH
Confidence 899999999999999999999999999999999999999997
No 23
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.80 E-value=9.9e-19 Score=126.53 Aligned_cols=114 Identities=28% Similarity=0.354 Sum_probs=101.8
Q ss_pred CCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCc
Q 025005 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220 (259)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 220 (259)
..+++++|. +++.+++++.++.++++.|.+.+.+.+||+++|+++|++|.+|++ .++..+.. ...+++++|.+++.
T Consensus 3 ~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~-~~~~~~~~-~~~~v~~~~~~~~~ 78 (133)
T 2ef7_A 3 EEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIV-KAIGKGKS-LETKAEEFMTASLI 78 (133)
T ss_dssp CCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHH-HHHHTTCC-TTCBGGGTSEECCC
T ss_pred cccHHHhcc--CCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHH-HHHhcCCC-cccCHHHHcCCCCE
Confidence 456889997 679999999999999999999999999999999999999999997 44444332 24789999998999
Q ss_pred eecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 221 CATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++++++++.++++.|.+++.+++||+|++|+++|+||+
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~ 116 (133)
T 2ef7_A 79 TIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISI 116 (133)
T ss_dssp CEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEH
Confidence 99999999999999999999999999989999999996
No 24
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.79 E-value=3.6e-19 Score=128.11 Aligned_cols=114 Identities=11% Similarity=0.038 Sum_probs=101.2
Q ss_pred CCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCc
Q 025005 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220 (259)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 220 (259)
..+++++|. +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|+++ .+..+.. ...+++++|.+++.
T Consensus 4 s~~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~-~~~~~~~-~~~~v~~~m~~~~~ 79 (128)
T 3gby_A 4 SVTFSYLAE--TDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLE-GRKGWPT-VKEKLGEELLETVR 79 (128)
T ss_dssp TCBGGGGCB--CCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHT-TCSSSCC-TTCBCCGGGCBCCC
T ss_pred ceEHHHhhc--CCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHH-HHhhCCc-ccCcHHHHccCCCc
Confidence 456889998 6799999999999999999999999999999999999999999973 3332221 23679999999999
Q ss_pred eecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 221 CATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++++++++.++++.|.+++.+.+||+|++|+++|+||+
T Consensus 80 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~ 117 (128)
T 3gby_A 80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSR 117 (128)
T ss_dssp CBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEH
T ss_pred EECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEH
Confidence 99999999999999999999999999999999999997
No 25
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.79 E-value=6e-19 Score=138.15 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=104.6
Q ss_pred CCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 38 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
....+++++|.++++++.++.++.+|+++|.+++++++||+| +++++|+++..|+...
T Consensus 10 ~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~--------------------- 68 (213)
T 1vr9_A 10 HHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL--------------------- 68 (213)
T ss_dssp ---CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS---------------------
T ss_pred ccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhh---------------------
Confidence 335688999999999999999999999999999999999999 7999999999998743
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di 195 (259)
....+++++|. +++.++++++++.+++++|.+++++.+||+| +|+++|++|.+|+
T Consensus 69 ----------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Di 124 (213)
T 1vr9_A 69 ----------------------DLDSSVFNKVS--LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDF 124 (213)
T ss_dssp ----------------------CTTSBSGGGCB--CTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHH
T ss_pred ----------------------cCCCcHHHHcc--CCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHH
Confidence 11346889997 6789999999999999999999999999999 6999999999999
Q ss_pred HHHHHhcCCCCcccccccccCCC-CceecCCCCHHHHHHHHHhCCCceeeeecCCC
Q 025005 196 LMRVISQNLPADSTLVEKVMTPN-PECATIDTPIVDALHIMHDGKFLHLPVVDRGD 250 (259)
Q Consensus 196 ~~~~~~~~~~~~~~~v~~~~~~~-~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~ 250 (259)
++.+..... ..+.+.+- +.+.....++.++.+.|.+++.+.++|++.+|
T Consensus 125 l~~~~~~~~------~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~ 174 (213)
T 1vr9_A 125 LEALIEALA------MDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRS 174 (213)
T ss_dssp HHHHHHSCC-----------------------------------------------
T ss_pred HHHHHHHhc------CCCCcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence 865543221 11222211 11223444599999999999999999986544
No 26
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.79 E-value=5e-19 Score=126.13 Aligned_cols=109 Identities=22% Similarity=0.243 Sum_probs=98.2
Q ss_pred CcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCce
Q 025005 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC 221 (259)
Q Consensus 143 ~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~ 221 (259)
+++++|. +++.+++++.++.++++.|.+++.+.+||++ +|+++|++|..|+++.+.. +. .+++++|.+++.+
T Consensus 2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~-~~----~~v~~~~~~~~~~ 74 (122)
T 3kpb_A 2 LVKDILS--KPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ-NK----KTIEEIMTRNVIT 74 (122)
T ss_dssp BHHHHCC--SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT-TC----CBGGGTSBSSCCC
T ss_pred chHHhhC--CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh-cc----cCHHHHhcCCCeE
Confidence 4567787 6789999999999999999999999999999 9999999999999854433 22 3899999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 222 ATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++++++.++++.|.+++.+++||+|++|+++|+||+
T Consensus 75 v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~ 111 (122)
T 3kpb_A 75 AHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTS 111 (122)
T ss_dssp EETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEH
T ss_pred ECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeH
Confidence 9999999999999999999999999988999999996
No 27
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.79 E-value=1e-18 Score=124.98 Aligned_cols=112 Identities=23% Similarity=0.196 Sum_probs=100.0
Q ss_pred CcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCcee
Q 025005 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA 222 (259)
Q Consensus 143 ~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v 222 (259)
+++++|. +++.++++++++.++++.|.+.+.+.+||+|+|+++|++|.+|++ .++..+......+++++|.+++.++
T Consensus 2 ~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~-~~~~~~~~~~~~~v~~~m~~~~~~v 78 (125)
T 1pbj_A 2 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVL-EAIAEGDDLAEVKVWEVMERDLVTI 78 (125)
T ss_dssp CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHH-HHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred CHHHhcC--CCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHH-HHHhcCCcccccCHHHHcCCCCeEE
Confidence 3567786 679999999999999999999999999999999999999999998 4544444334678999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 223 TIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 223 ~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++++++.++++.|.+++.+++||+|+ |+++|+||+
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~ 113 (125)
T 1pbj_A 79 SPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISA 113 (125)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEH
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEH
Confidence 99999999999999999999999997 999999996
No 28
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.79 E-value=1.2e-18 Score=126.85 Aligned_cols=115 Identities=24% Similarity=0.436 Sum_probs=103.3
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCC
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~ 218 (259)
...+++++|. +++.+++++.++.++++.|.+++.+++||+| +|+++|++|..|+++.++..+. ....+++++|.++
T Consensus 5 ~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~~~ 81 (138)
T 2yzi_A 5 MKAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTRN 81 (138)
T ss_dssp TTSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBCS
T ss_pred hhhhHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-cccCCHHHHhhCC
Confidence 4567889997 6799999999999999999999999999999 8999999999999755555443 3457899999999
Q ss_pred CceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+.++++++++.+|++.|.+++.+++ |+|++|+++|+||+
T Consensus 82 ~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~ 120 (138)
T 2yzi_A 82 LITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTL 120 (138)
T ss_dssp CCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEH
T ss_pred CeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEH
Confidence 9999999999999999999999999 99989999999996
No 29
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.78 E-value=1.6e-18 Score=129.45 Aligned_cols=121 Identities=21% Similarity=0.217 Sum_probs=106.1
Q ss_pred HHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccc
Q 025005 134 TLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE 212 (259)
Q Consensus 134 ~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~ 212 (259)
.+...+...+++++|. + ++++.+++++.++++.|.+.+++++||+| +|+++|++|.+|+++.++.. ......+++
T Consensus 9 ~l~~~l~~~~v~~im~--~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-~~~~~~~v~ 84 (159)
T 3fv6_A 9 LLADKLKKLQVKDFQS--I-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQ-QELTSVPVH 84 (159)
T ss_dssp HHHHHHTTCBGGGSCB--C-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSC-SCTTTCBGG
T ss_pred HHHHHHhhCCHHHHcC--C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhcc-CcccCcCHH
Confidence 3455567788999997 4 55999999999999999999999999999 89999999999998555443 333467999
Q ss_pred cccCC--CCceecCCCCHHHHHHHHHhCCCceeeeecCCC---ceeeEEec
Q 025005 213 KVMTP--NPECATIDTPIVDALHIMHDGKFLHLPVVDRGD---MPITCYSK 258 (259)
Q Consensus 213 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~---~~~Gvitr 258 (259)
++|.+ ++.++.+++++.+|++.|.+++.+++||+|++| +++|+||+
T Consensus 85 ~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~ 135 (159)
T 3fv6_A 85 IIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTK 135 (159)
T ss_dssp GTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEH
T ss_pred HHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEH
Confidence 99998 889999999999999999999999999999888 99999996
No 30
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.78 E-value=1.2e-18 Score=128.72 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=103.4
Q ss_pred CCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCC
Q 025005 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (259)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (259)
..+++++|.+..++.++++++++.++++.|.+++++.+||+| +|+++|++|..|++ .++..+......+++++|.+++
T Consensus 27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~-~~~~~~~~~~~~~v~~~m~~~~ 105 (149)
T 3k2v_A 27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLR-RVFDTGVDMRDASIADVMTRGG 105 (149)
T ss_dssp TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHH-HHHCSSSCCTTCBHHHHSEESC
T ss_pred ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHH-HHHhcCCCcccCcHHHHcCCCC
Confidence 457999998322899999999999999999999999999999 89999999999997 5555554445689999999999
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.++.+++++.+|++.|.+++.+.+||+|++ +++|+||+
T Consensus 106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~ 143 (149)
T 3k2v_A 106 IRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHM 143 (149)
T ss_dssp CEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEH
T ss_pred eEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEH
Confidence 999999999999999999999999999965 99999996
No 31
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.78 E-value=1.7e-19 Score=129.69 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=97.8
Q ss_pred CCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccCCCC
Q 025005 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (259)
Q Consensus 142 ~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (259)
.+++++|.+..++.++++++++.++++.|.+++++++||++ + |+++|++|.+|+++.+... . ...+++++|.+ +
T Consensus 3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~-~--~~~~v~~~m~~-~ 78 (127)
T 3nqr_A 3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD-A--EAFSMDKVLRT-A 78 (127)
T ss_dssp CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTT-C--CCCCHHHHCBC-C
T ss_pred cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcc-C--CCCCHHHHcCC-C
Confidence 35678887434588999999999999999999999999999 5 8999999999997433222 2 35789999965 7
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.++++++++.+|++.|.+++.+.+||+|++|+++|+||+
T Consensus 79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~ 117 (127)
T 3nqr_A 79 VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTI 117 (127)
T ss_dssp CEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEH
T ss_pred eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEH
Confidence 899999999999999999999999999999999999997
No 32
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.78 E-value=7.2e-19 Score=127.63 Aligned_cols=115 Identities=27% Similarity=0.406 Sum_probs=101.4
Q ss_pred CcccccCCC-CCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCce
Q 025005 143 SLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPEC 221 (259)
Q Consensus 143 ~v~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~ 221 (259)
+++++|.+. +++.++++++++.++++.|.+++.+++||+++|+++|++|.+|+++.+...+......+++++|.+++.+
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~ 86 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVAY 86 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCCC
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCCeE
Confidence 456677411 4688999999999999999999999999999999999999999985566655444568999999999999
Q ss_pred ecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 222 ATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++++++.+|++.|.+++.+++||+| +|+++|+||+
T Consensus 87 v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~ 122 (135)
T 2rc3_A 87 VDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSI 122 (135)
T ss_dssp BCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEH
T ss_pred ECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEH
Confidence 99999999999999999999999999 7999999996
No 33
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.78 E-value=2.3e-19 Score=130.52 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=98.9
Q ss_pred CCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccCCCC
Q 025005 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (259)
Q Consensus 142 ~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (259)
.+++++|.+.+++.+++++.++.++++.|.+++++++||++ + |+++|++|.+|+++.+ ..+. ....+++++|.+ +
T Consensus 3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~-~~~~-~~~~~v~~~m~~-~ 79 (136)
T 3lfr_A 3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLI-LKAD-GDSDDVKKLLRP-A 79 (136)
T ss_dssp CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGG-GSSS-GGGCCGGGTCBC-C
T ss_pred CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHH-Hhcc-CCCcCHHHHcCC-C
Confidence 35678887445689999999999999999999999999999 5 8999999999997443 3221 235789999975 8
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.++++++++.+|++.|.+++.+.+||+|++|+++|+||+
T Consensus 80 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~ 118 (136)
T 3lfr_A 80 TFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTI 118 (136)
T ss_dssp CEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEH
T ss_pred eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEH
Confidence 999999999999999999999999999999999999996
No 34
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.78 E-value=9.8e-19 Score=126.17 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=101.5
Q ss_pred CCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHH
Q 025005 37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAA 112 (259)
Q Consensus 37 ~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~ 112 (259)
++.+.+++++|++ +++++++++++.+|++.|.+++++++||+| + |+++|+++..|++......
T Consensus 2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~------------- 68 (130)
T 3i8n_A 2 NAQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSG------------- 68 (130)
T ss_dssp -----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTT-------------
T ss_pred CcCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcC-------------
Confidence 3567899999984 567999999999999999999999999998 4 8999999999998753210
Q ss_pred HhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEee
Q 025005 113 AVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILT 191 (259)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit 191 (259)
....+++++|. ++.++.+++++.++++.|.+++.+.+||+| +|+++|++|
T Consensus 69 --------------------------~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt 119 (130)
T 3i8n_A 69 --------------------------SGQKQLGAVMR---PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVT 119 (130)
T ss_dssp --------------------------TTTSBHHHHSE---ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEE
T ss_pred --------------------------CCcCCHHHHhc---CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEE
Confidence 11345677774 478999999999999999999999999999 899999999
Q ss_pred hHHHHHHHHh
Q 025005 192 SKDILMRVIS 201 (259)
Q Consensus 192 ~~di~~~~~~ 201 (259)
..|+++.++.
T Consensus 120 ~~dil~~l~g 129 (130)
T 3i8n_A 120 LEDIFEHLVG 129 (130)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 9999976653
No 35
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.78 E-value=3e-18 Score=125.31 Aligned_cols=112 Identities=21% Similarity=0.273 Sum_probs=100.1
Q ss_pred CCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CC--eeeEEeehHHHHHHHHhcCCCCcccccccccCCC
Q 025005 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN--KPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218 (259)
Q Consensus 142 ~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g--~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~ 218 (259)
.+++++|. +++.++++++++.++++.|.+++.+.+||+| +| +++|++|.+|+++. +..+.. ...+++++|.++
T Consensus 5 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~-~~~~~~-~~~~v~~~m~~~ 80 (141)
T 2rih_A 5 IRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRA-VAQRLD-LDGPAMPIANSP 80 (141)
T ss_dssp CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHH-HHTTCC-TTSBSGGGCBCC
T ss_pred eEHHHHhc--CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHH-HhcCCC-CCCCHHHHcCCC
Confidence 46888997 6799999999999999999999999999999 66 99999999999854 433322 257899999999
Q ss_pred CceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+.+++++ ++.+|++.|.+++.+++||+|++|+++|+||+
T Consensus 81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~ 119 (141)
T 2rih_A 81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSI 119 (141)
T ss_dssp CEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred CeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEH
Confidence 9999999 99999999999999999999989999999996
No 36
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.78 E-value=2.2e-18 Score=122.81 Aligned_cols=116 Identities=22% Similarity=0.325 Sum_probs=103.4
Q ss_pred ccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 025005 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 119 (259)
Q Consensus 41 ~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (259)
++++++|.+++.++++++++.+|++.|.+++.+.+||+| +|+++|+++..+++..+..
T Consensus 1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~--------------------- 59 (122)
T 3kpb_A 1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ--------------------- 59 (122)
T ss_dssp CBHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHT---------------------
T ss_pred CchHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHh---------------------
Confidence 468999999999999999999999999999999999999 7999999999999875321
Q ss_pred ccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHH
Q 025005 120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR 198 (259)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~ 198 (259)
...+++++|. +++.++++++++.++++.|.+.+.+.+||+| +|+++|++|..|+++.
T Consensus 60 --------------------~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~ 117 (122)
T 3kpb_A 60 --------------------NKKTIEEIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRL 117 (122)
T ss_dssp --------------------TCCBGGGTSB--SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred --------------------cccCHHHHhc--CCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHH
Confidence 1236888887 6789999999999999999999999999999 6999999999999854
Q ss_pred H
Q 025005 199 V 199 (259)
Q Consensus 199 ~ 199 (259)
+
T Consensus 118 l 118 (122)
T 3kpb_A 118 F 118 (122)
T ss_dssp H
T ss_pred h
Confidence 4
No 37
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.78 E-value=4e-18 Score=123.32 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=106.9
Q ss_pred CcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 025005 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (259)
Q Consensus 39 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (259)
.+.+++++|.+++.+++++.++.+|++.|.+++.+++||+|+|+++|+++..+++..+...
T Consensus 2 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~------------------- 62 (133)
T 2ef7_A 2 EEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKG------------------- 62 (133)
T ss_dssp CCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTT-------------------
T ss_pred CcccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhcC-------------------
Confidence 4679999999999999999999999999999999999999999999999999998652210
Q ss_pred cccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHH
Q 025005 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~ 197 (259)
.....+++++|. +++.++++++++.++++.|.+.+.+.+||++ +|+++|++|..|+++
T Consensus 63 -------------------~~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~ 121 (133)
T 2ef7_A 63 -------------------KSLETKAEEFMT--ASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITR 121 (133)
T ss_dssp -------------------CCTTCBGGGTSE--ECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred -------------------CCcccCHHHHcC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHH
Confidence 012356888886 5789999999999999999999999999999 899999999999986
Q ss_pred HHHh
Q 025005 198 RVIS 201 (259)
Q Consensus 198 ~~~~ 201 (259)
.+..
T Consensus 122 ~~~~ 125 (133)
T 2ef7_A 122 AIDD 125 (133)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 38
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.78 E-value=4.4e-18 Score=128.82 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=113.5
Q ss_pred eEEEEEehhHHHHHHHHhcCCCCccccccccc--CCCeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHHH
Q 025005 17 LLCGILTDKDIATRVIARELNLEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKC 92 (259)
Q Consensus 17 ~~~g~~t~~di~~~~~~~~~~~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~i 92 (259)
.--|.++..+ +..+..-..+.+.+++++|+ +++++++++.++.+|++.|.+++++++||++ + ++++|+++..|+
T Consensus 14 ~~~g~l~~~e--~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl 91 (173)
T 3ocm_A 14 PAVPAFGVEE--RNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDL 91 (173)
T ss_dssp ----CCCHHH--HHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHH
T ss_pred HhcCCcCHHH--HHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHH
Confidence 3458888766 34444445677899999997 4689999999999999999999999999998 4 799999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHH
Q 025005 93 LYDAIARMERAAEKGKAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLE 172 (259)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~ 172 (259)
+...... ...+++ ++ +++.++++++++.++++.|.+
T Consensus 92 ~~~~~~~----------------------------------------~~~~v~-~~---~~~~~v~~~~~l~~al~~m~~ 127 (173)
T 3ocm_A 92 VADLITE----------------------------------------GRVRRN-RL---RDPIIVHESIGILRLMDTLKR 127 (173)
T ss_dssp HHHHHHH----------------------------------------SSCCGG-GS---BCCCEECGGGCHHHHHHHHHH
T ss_pred HHHHhcC----------------------------------------CcchhH-hc---CCCeEECCCCcHHHHHHHHHH
Confidence 8763210 123455 44 458899999999999999999
Q ss_pred cCCceEEEee-CCeeeEEeehHHHHHHHHhc
Q 025005 173 LRLSSAVVTV-ENKPRGILTSKDILMRVISQ 202 (259)
Q Consensus 173 ~~~~~~~V~~-~g~~~Giit~~di~~~~~~~ 202 (259)
++.+.+||+| +|+++|+||..|+++.+...
T Consensus 128 ~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~ 158 (173)
T 3ocm_A 128 SRGQLVLVADEFGAIEGLVTPIDVFEAIAGE 158 (173)
T ss_dssp STTCCEEEECTTCCEEEEECHHHHHHHHHCC
T ss_pred cCCeEEEEEeCCCCEEEEEeHHHHHHHHhCc
Confidence 9999999998 89999999999999777653
No 39
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.78 E-value=2e-18 Score=128.52 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=102.8
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCC---Ccccccccc
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP---ADSTLVEKV 214 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~---~~~~~v~~~ 214 (259)
+...+++++|.+.+++.++++++++.++++.|.+++++++||+| +|+++|++|..|+++.+...... ....+++++
T Consensus 12 l~~~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~v~~~ 91 (156)
T 3ctu_A 12 FLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHM 91 (156)
T ss_dssp HHHTTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGG
T ss_pred HHHHHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHhccccccccccCcHHHh
Confidence 45567899998556799999999999999999999999999999 89999999999998655543321 125789999
Q ss_pred cCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 215 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
|.+++.++.+++++.+|++.|.+++ ++||+|++|+++|+||++
T Consensus 92 m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~ 134 (156)
T 3ctu_A 92 TKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRK 134 (156)
T ss_dssp CBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETT
T ss_pred ccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHH
Confidence 9999999999999999999999987 699999999999999974
No 40
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.77 E-value=5.8e-18 Score=127.22 Aligned_cols=129 Identities=18% Similarity=0.162 Sum_probs=111.0
Q ss_pred cCCCCcccccccccC---CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHH
Q 025005 35 ELNLEETPVSKVMTR---NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAI 110 (259)
Q Consensus 35 ~~~~~~~~v~~~~~~---~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~ 110 (259)
...+...+++++|.+ +++++++++++.+|++.|.+++++.+||+| +|+++|+++..+++..+....
T Consensus 18 ~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~---------- 87 (165)
T 3fhm_A 18 YFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQG---------- 87 (165)
T ss_dssp CCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHG----------
T ss_pred hHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcC----------
Confidence 346668899999985 799999999999999999999999999999 689999999999987643210
Q ss_pred HHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEe
Q 025005 111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGIL 190 (259)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Gii 190 (259)
......+++++|. +++.++.+++++.++++.|.+.+.+.+||+|+|+++|++
T Consensus 88 --------------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Gii 139 (165)
T 3fhm_A 88 --------------------------AASLQQSVSVAMT--KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGII 139 (165)
T ss_dssp --------------------------GGGGTSBGGGTSB--SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEE
T ss_pred --------------------------CccccCCHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEE
Confidence 0123567889997 679999999999999999999999999999999999999
Q ss_pred ehHHHHHHHHh
Q 025005 191 TSKDILMRVIS 201 (259)
Q Consensus 191 t~~di~~~~~~ 201 (259)
|..|+++.+..
T Consensus 140 t~~dil~~~~~ 150 (165)
T 3fhm_A 140 SIGDVVKARIG 150 (165)
T ss_dssp EHHHHHHHTTC
T ss_pred EHHHHHHHHHH
Confidence 99999855443
No 41
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.77 E-value=3.9e-18 Score=121.93 Aligned_cols=120 Identities=19% Similarity=0.244 Sum_probs=104.1
Q ss_pred cccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccc
Q 025005 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW 121 (259)
Q Consensus 42 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (259)
+++++|.+++.++++++++.+|++.|.+++.+.+||+|+|+++|+++..|++..+...
T Consensus 2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~~~~---------------------- 59 (125)
T 1pbj_A 2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEG---------------------- 59 (125)
T ss_dssp CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHT----------------------
T ss_pred CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHHhcC----------------------
Confidence 6789999999999999999999999999999999999999999999999998653210
Q ss_pred CCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHH
Q 025005 122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVI 200 (259)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~ 200 (259)
......++.++|. +++.++++++++.++++.|.+.+.+.+||+++|+++|++|..|+++.+.
T Consensus 60 ---------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l~ 121 (125)
T 1pbj_A 60 ---------------DDLAEVKVWEVME--RDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKM 121 (125)
T ss_dssp ---------------CCTTTSBHHHHCB--CGGGEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHC
T ss_pred ---------------CcccccCHHHHcC--CCCeEECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHHH
Confidence 0012445777886 6799999999999999999999999999999999999999999986553
No 42
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.77 E-value=5.8e-19 Score=127.77 Aligned_cols=114 Identities=15% Similarity=0.304 Sum_probs=101.7
Q ss_pred CCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCc
Q 025005 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPE 220 (259)
Q Consensus 142 ~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~ 220 (259)
.+++++|. +++.++++++++.++++.|.+++.+.+||+| +|+++|++|.+|+++.++..+......+++++|.+++.
T Consensus 8 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~ 85 (133)
T 1y5h_A 8 TTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIY 85 (133)
T ss_dssp CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCC
T ss_pred cCHHHHhc--CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcCCCE
Confidence 46788887 6788999999999999999999999999998 89999999999997445555444345789999999999
Q ss_pred eecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 221 CATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++++++++.++++.|.+++.+++||+|+ |+++|+||+
T Consensus 86 ~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~ 122 (133)
T 1y5h_A 86 YVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTE 122 (133)
T ss_dssp CEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEH
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEH
Confidence 9999999999999999999999999997 999999996
No 43
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.77 E-value=9.4e-19 Score=131.54 Aligned_cols=119 Identities=23% Similarity=0.284 Sum_probs=105.2
Q ss_pred hcCCCcccccCCC-CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccC
Q 025005 139 MFRPSLSTIIPEK-SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 139 ~~~~~v~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+...+++++|.+. .++.++.+++++.++++.|.+.+.+.+||+| +|+++|++|.+|+++.+..........+++++|.
T Consensus 21 l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~ 100 (165)
T 3fhm_A 21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMT 100 (165)
T ss_dssp SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTSB
T ss_pred hhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHHhc
Confidence 4567788888731 3689999999999999999999999999999 8999999999999866665443344688999999
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++.++.+++++.+|++.|.+++.+++||+|+ |+++|+||+
T Consensus 101 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~ 141 (165)
T 3fhm_A 101 KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISI 141 (165)
T ss_dssp SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEH
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEH
Confidence 99999999999999999999999999999998 999999996
No 44
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.77 E-value=7.5e-19 Score=130.41 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=101.8
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEe-e--CCeeeEEeehHHHHHHHHhcCCCCccccccccc
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVT-V--ENKPRGILTSKDILMRVISQNLPADSTLVEKVM 215 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~-~--~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~ 215 (259)
+...+++++|.+..++.++++++++.++++.|.+++++++||+ + +|+++|++|.+|+++.+.... ..+++++|
T Consensus 17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m 92 (153)
T 3oco_A 17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD----KAKISTIM 92 (153)
T ss_dssp HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT----TSBGGGTC
T ss_pred cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC----CCcHHHHh
Confidence 3456789999732379999999999999999999999999999 5 489999999999986555443 47899999
Q ss_pred CCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 216 TPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 216 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++.++++++++.+|++.|.+++.+.+||+|++|+++|+||+
T Consensus 93 -~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~ 134 (153)
T 3oco_A 93 -RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITD 134 (153)
T ss_dssp -BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECH
T ss_pred -CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeH
Confidence 799999999999999999999999999999999999999996
No 45
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.77 E-value=1.7e-18 Score=124.59 Aligned_cols=121 Identities=11% Similarity=0.168 Sum_probs=105.5
Q ss_pred CcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 025005 39 EETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (259)
Q Consensus 39 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (259)
.+.+++++|.+++.++++++++.+|++.|.+++++++||+|+|+++|+++..|+......
T Consensus 3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~-------------------- 62 (128)
T 3gby_A 3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKG-------------------- 62 (128)
T ss_dssp TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSS--------------------
T ss_pred cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhh--------------------
Confidence 468999999999999999999999999999999999999999999999999999853100
Q ss_pred cccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHH
Q 025005 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~ 197 (259)
. .....+++++|. +++.++.+++++.++++.|.+++.+.+||+| +|+++|++|..|+++
T Consensus 63 -~-----------------~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~ 122 (128)
T 3gby_A 63 -W-----------------PTVKEKLGEELL--ETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILG 122 (128)
T ss_dssp -S-----------------CCTTCBCCGGGC--BCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHH
T ss_pred -C-----------------CcccCcHHHHcc--CCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHH
Confidence 0 011245888997 6789999999999999999999999999998 899999999999985
Q ss_pred HH
Q 025005 198 RV 199 (259)
Q Consensus 198 ~~ 199 (259)
.+
T Consensus 123 ~l 124 (128)
T 3gby_A 123 FL 124 (128)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 46
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.77 E-value=9.6e-19 Score=129.32 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=101.6
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcC----CCCccccccc
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN----LPADSTLVEK 213 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~----~~~~~~~v~~ 213 (259)
+...+++++|.+..++.++++++++.++++.|.+++++++||+| +|+++|++|..|+++.+.... ......++++
T Consensus 12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~ 91 (150)
T 3lqn_A 12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ 91 (150)
T ss_dssp HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG
T ss_pred hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH
Confidence 44567889997434689999999999999999999999999999 999999999999985443211 1123578999
Q ss_pred ccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 214 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+|.+++.++++++++.+|++.|.+++. +||+|++|+++|+||+
T Consensus 92 ~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~ 134 (150)
T 3lqn_A 92 VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTR 134 (150)
T ss_dssp TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEH
T ss_pred HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEH
Confidence 999999999999999999999999987 9999999999999996
No 47
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.77 E-value=6.3e-19 Score=127.04 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=97.1
Q ss_pred CCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccCCC
Q 025005 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218 (259)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~ 218 (259)
..+++++|.+.+++.+++++.++.++++.|.+++++++||++ + |+++|++|.+|+++.+ .. ...+++++|. +
T Consensus 4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~-~~----~~~~v~~~m~-~ 77 (129)
T 3jtf_A 4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYM-LE----PALDIRSLVR-P 77 (129)
T ss_dssp CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGG-TC----TTSCGGGGCB-C
T ss_pred CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHh-cc----CCcCHHHHhC-C
Confidence 456788887545688999999999999999999999999999 4 8999999999997433 22 2467899996 4
Q ss_pred CceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+.++++++++.+|++.|.+++.+.+||+|++|+++|+||+
T Consensus 78 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~ 117 (129)
T 3jtf_A 78 AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTM 117 (129)
T ss_dssp CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEH
T ss_pred CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEH
Confidence 7899999999999999999999999999989999999997
No 48
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.77 E-value=1.5e-18 Score=125.09 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=102.8
Q ss_pred Cccccccccc--CCCeEEeCcchHHHHHHHHHhCCccEeeEeeC--CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 025005 39 EETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN--GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (259)
Q Consensus 39 ~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~--~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (259)
.+.+++++|+ +++++++++.++.+|++.|.+++++++||+++ ++++|+++..|++....
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~----------------- 65 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML----------------- 65 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT-----------------
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc-----------------
Confidence 4679999998 67899999999999999999999999999984 89999999999876410
Q ss_pred hhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehH
Q 025005 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 193 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~ 193 (259)
....+++++|. ++.++.+++++.++++.|.+++.+.+||+| +|+++|++|..
T Consensus 66 ------------------------~~~~~v~~~m~---~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~ 118 (129)
T 3jtf_A 66 ------------------------EPALDIRSLVR---PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTME 118 (129)
T ss_dssp ------------------------CTTSCGGGGCB---CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHH
T ss_pred ------------------------cCCcCHHHHhC---CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHH
Confidence 12345788885 378999999999999999999999999999 79999999999
Q ss_pred HHHHHHHh
Q 025005 194 DILMRVIS 201 (259)
Q Consensus 194 di~~~~~~ 201 (259)
|+++.++.
T Consensus 119 Dil~~l~g 126 (129)
T 3jtf_A 119 DVLEQIVG 126 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99977654
No 49
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.77 E-value=3.6e-18 Score=124.35 Aligned_cols=116 Identities=28% Similarity=0.358 Sum_probs=102.0
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHH-HHHHHhcCCCCcccccccccC
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI-LMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di-~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+...+++++|. +++.++.+++++.++++.|.+.+.+.+||+| +|+++|++|.+|+ ++ ++..+. ....+++++|.
T Consensus 5 l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~-~~~~~~-~~~~~v~~~m~ 80 (138)
T 2p9m_A 5 LKNIKVKDVMT--KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYN-LIRDKY-TLETTIGDVMT 80 (138)
T ss_dssp CTTCBGGGTSB--CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHH-HTTTCC-CSSCBHHHHSC
T ss_pred cccCCHHHhhc--CCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHH-HHhhcc-cCCcCHHHHhC
Confidence 44667899997 6799999999999999999999999999999 8999999999999 74 443332 23578999999
Q ss_pred CCCceecCCCCHHHHHHHHHhCC-----CceeeeecCCCceeeEEec
Q 025005 217 PNPECATIDTPIVDALHIMHDGK-----FLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~-----~~~l~Vvd~~~~~~Gvitr 258 (259)
+++.++++++++.++++.|.+++ .+++||+|++|+++|+||+
T Consensus 81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~ 127 (138)
T 2p9m_A 81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISD 127 (138)
T ss_dssp SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEH
T ss_pred CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEH
Confidence 99999999999999999999999 9999999989999999996
No 50
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.77 E-value=4.3e-18 Score=130.22 Aligned_cols=116 Identities=22% Similarity=0.213 Sum_probs=103.5
Q ss_pred CCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCC
Q 025005 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (259)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (259)
..+++++|. +++.++.+++++.+++++|.+++++.+||++ +|+++|++|.+|+++.+..........+++++|.+++
T Consensus 8 ~~~v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~ 85 (184)
T 1pvm_A 8 FMRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI 85 (184)
T ss_dssp CCBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred ccCHHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCC
Confidence 356889997 6799999999999999999999999999998 8999999999999855443333344578999999999
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.++++++++.+|++.|.+++.+.+||+|++|+++|+||+
T Consensus 86 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~ 124 (184)
T 1pvm_A 86 PKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTL 124 (184)
T ss_dssp CEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEH
T ss_pred cEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEH
Confidence 999999999999999999999999999988999999996
No 51
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.77 E-value=3.9e-18 Score=126.93 Aligned_cols=125 Identities=19% Similarity=0.205 Sum_probs=104.0
Q ss_pred cccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 40 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
..+++++|++ +++++.+++++.+|+++|.+++++++||+| +|+++|+++..|++..+.....
T Consensus 14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~--------------- 78 (156)
T 3k6e_A 14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL--------------- 78 (156)
T ss_dssp HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC---------------
T ss_pred hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhccc---------------
Confidence 4578999974 799999999999999999999999999998 5999999999999876443100
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di 195 (259)
........+++++|. +++.++++++++.++++.|.+++ .+||+| +|+++|+||..|+
T Consensus 79 ------------------~~~~~~~~~v~~im~--~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Di 136 (156)
T 3k6e_A 79 ------------------SQEIMADTDIVHMTK--TDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSI 136 (156)
T ss_dssp ------------------CHHHHTTSBGGGTCB--CSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHH
T ss_pred ------------------ccccccccCHHHhhc--CCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHH
Confidence 011234567899998 78999999999999999998775 499999 8999999999999
Q ss_pred HHHHHh
Q 025005 196 LMRVIS 201 (259)
Q Consensus 196 ~~~~~~ 201 (259)
++.+..
T Consensus 137 l~~~~~ 142 (156)
T 3k6e_A 137 LKAVNA 142 (156)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 966643
No 52
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.76 E-value=7.3e-19 Score=130.93 Aligned_cols=115 Identities=13% Similarity=0.142 Sum_probs=101.3
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccC
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+...+++++|.+..++++++++.++.++++.|.+++++++||++ + |+++|++|.+|+++ .+..+ ...+++++|.
T Consensus 35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~-~~~~~---~~~~v~~im~ 110 (156)
T 3oi8_A 35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLK-YMFNP---EQFHLKSILR 110 (156)
T ss_dssp HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGG-GSSCG---GGCCHHHHCB
T ss_pred cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH-HHHcC---CcccHHHHcC
Confidence 56788999998434799999999999999999999999999999 5 59999999999974 33222 3578999997
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+ +.++++++++.+|++.|.+++.+.+||+|++|+++|+||+
T Consensus 111 ~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~ 151 (156)
T 3oi8_A 111 P-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTF 151 (156)
T ss_dssp C-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEH
T ss_pred C-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEH
Confidence 5 8899999999999999999999999999999999999997
No 53
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.76 E-value=3.3e-18 Score=129.51 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=100.3
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C-CeeeEEeehHHHHHHHHhcCCCCcccccccccC
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E-NKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+...+++++|++.+++++++++.++.++++.|.+++++.+||++ + |+++|++|.+|+++.+.... ..+++ |.
T Consensus 33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~----~~~v~--~~ 106 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG----RVRRN--RL 106 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----SCCGG--GS
T ss_pred cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC----cchhH--hc
Confidence 56788999997545789999999999999999999999999998 5 89999999999985554432 35666 45
Q ss_pred CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 217 PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++.++++++++.+|+++|.+++.+.+||+|++|+++|+||+
T Consensus 107 ~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~ 148 (173)
T 3ocm_A 107 RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTP 148 (173)
T ss_dssp BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECH
T ss_pred CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeH
Confidence 688999999999999999999999999999999999999996
No 54
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.76 E-value=3.5e-18 Score=125.22 Aligned_cols=116 Identities=12% Similarity=0.080 Sum_probs=97.4
Q ss_pred CCCccc---ccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccC
Q 025005 141 RPSLST---IIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 141 ~~~v~~---~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~ 216 (259)
..++++ +|. +++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|+++.+..........+++++|.
T Consensus 7 ~~~v~~~~~~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~ 84 (144)
T 2nyc_A 7 KIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM 84 (144)
T ss_dssp GSBGGGSSCCBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHH
T ss_pred hcchhhcCCCCC--CCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHHHh
Confidence 445666 665 6799999999999999999999999999999 8999999999999855443222233578999887
Q ss_pred C------CCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 217 P------NPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ~------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+ ++.++++++++.++++.|.+++.+++||+|++|+++|+||+
T Consensus 85 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~ 132 (144)
T 2nyc_A 85 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTL 132 (144)
T ss_dssp HCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred cCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEH
Confidence 5 67899999999999999999999999999989999999996
No 55
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.76 E-value=4.1e-18 Score=127.38 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=100.4
Q ss_pred CCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhc-------CCCCcccccc
Q 025005 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ-------NLPADSTLVE 212 (259)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~-------~~~~~~~~v~ 212 (259)
..+++++|. +++.++.++.++.+++++|.+.+.+.+||+| +|+++|++|..|+++.+... .......+++
T Consensus 4 ~~~v~dim~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~ 81 (160)
T 2o16_A 4 MIKVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLF 81 (160)
T ss_dssp CCBGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHH
T ss_pred cCcHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHH
Confidence 356888997 6799999999999999999999999999999 89999999999998555431 1122357899
Q ss_pred cccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 213 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
++|.+++.++++++++.+|++.|.+++.+++||+|+ |+++|+||+
T Consensus 82 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~ 126 (160)
T 2o16_A 82 EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITD 126 (160)
T ss_dssp HHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECH
T ss_pred HHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEH
Confidence 999999999999999999999999999999999997 999999996
No 56
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.76 E-value=3.6e-18 Score=126.71 Aligned_cols=123 Identities=20% Similarity=0.290 Sum_probs=106.7
Q ss_pred CCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEe-e--CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHH
Q 025005 37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVV-E--NGEVIALLDIAKCLYDAIARMERAAEKGKAIA 111 (259)
Q Consensus 37 ~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~-d--~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~ 111 (259)
.+.+.+++++|++ ++++++++.++.+|++.|.+++++++||+ + +|+++|+++..+++..+...
T Consensus 16 ~l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~------------ 83 (153)
T 3oco_A 16 EMNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID------------ 83 (153)
T ss_dssp HHHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH------------
T ss_pred ccCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC------------
Confidence 4567899999986 89999999999999999999999999999 5 38999999999998763321
Q ss_pred HHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEe
Q 025005 112 AAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL 190 (259)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Gii 190 (259)
...+++++| +++.++.+++++.++++.|.+++.+.+||++ +|+++|++
T Consensus 84 ----------------------------~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGiv 132 (153)
T 3oco_A 84 ----------------------------DKAKISTIM---RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGII 132 (153)
T ss_dssp ----------------------------TTSBGGGTC---BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEE
T ss_pred ----------------------------CCCcHHHHh---CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEe
Confidence 134578888 3588999999999999999999999999999 79999999
Q ss_pred ehHHHHHHHHhc
Q 025005 191 TSKDILMRVISQ 202 (259)
Q Consensus 191 t~~di~~~~~~~ 202 (259)
|..|+++.+...
T Consensus 133 t~~dil~~l~~~ 144 (153)
T 3oco_A 133 TDKDVYEELFGN 144 (153)
T ss_dssp CHHHHHHHHHC-
T ss_pred eHHHHHHHHhcc
Confidence 999999766653
No 57
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.76 E-value=1.4e-18 Score=129.49 Aligned_cols=115 Identities=26% Similarity=0.366 Sum_probs=101.6
Q ss_pred CcccccCCC----CCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCC
Q 025005 143 SLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN 218 (259)
Q Consensus 143 ~v~~~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~ 218 (259)
+++++|.+. +++.++.+++++.++++.|.+++++.+||.++|+++|++|..|+++.+..........+++++|.++
T Consensus 8 ~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~ 87 (157)
T 4fry_A 8 TVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQERSSKATRVEEIMTAK 87 (157)
T ss_dssp BHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBSS
T ss_pred HHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCCC
Confidence 466677532 4579999999999999999999999999977999999999999986666555444568999999999
Q ss_pred CceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 219 PECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 219 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+.++++++++.+|++.|.+++.+++||+| +|+++|+||+
T Consensus 88 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~ 126 (157)
T 4fry_A 88 VRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISI 126 (157)
T ss_dssp CCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEH
T ss_pred CcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEH
Confidence 99999999999999999999999999999 7999999996
No 58
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.76 E-value=1e-17 Score=121.51 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=105.3
Q ss_pred ccccccc---CCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 025005 42 PVSKVMT---RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (259)
Q Consensus 42 ~v~~~~~---~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (259)
+++++|. ++++++++++++.+|++.|.+++++.+||+|+|+++|+++..|++..+...
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~------------------- 67 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL------------------- 67 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHGGGS-------------------
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHHHHHc-------------------
Confidence 8999999 899999999999999999999999999999999999999999998642110
Q ss_pred cccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHH
Q 025005 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 198 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~ 198 (259)
+ ......++.++|. +++.++++++++.++++.|.+++.+.+||+|+|+++|++|..|+++.
T Consensus 68 ---~--------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~ 128 (135)
T 2rc3_A 68 ---D--------------KPVKDTQVKEIMT--RQVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKD 128 (135)
T ss_dssp ---S--------------SCGGGSBGGGTSB--CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred ---C--------------CCcccCCHHHhcc--CCCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHH
Confidence 0 0023456888997 67999999999999999999999999999999999999999999865
Q ss_pred HHh
Q 025005 199 VIS 201 (259)
Q Consensus 199 ~~~ 201 (259)
+..
T Consensus 129 ~~~ 131 (135)
T 2rc3_A 129 AIS 131 (135)
T ss_dssp HHC
T ss_pred HHh
Confidence 543
No 59
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.76 E-value=9e-19 Score=125.83 Aligned_cols=119 Identities=17% Similarity=0.205 Sum_probs=101.0
Q ss_pred cccccccccCC--CeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 025005 40 ETPVSKVMTRN--PTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (259)
Q Consensus 40 ~~~v~~~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 115 (259)
+.+++++|.++ ++++++++++.+|++.|.+++++++||++ + |+++|+++..|++..+..
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~----------------- 64 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS----------------- 64 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST-----------------
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc-----------------
Confidence 56899999954 99999999999999999999999999999 4 799999999998864110
Q ss_pred hcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHH
Q 025005 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD 194 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~d 194 (259)
.....+++++|. + +.++++++++.++++.|.+++.+.+||+| +|+++|++|..|
T Consensus 65 ----------------------~~~~~~v~~~m~--~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~d 119 (127)
T 3nqr_A 65 ----------------------DAEAFSMDKVLR--T-AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIED 119 (127)
T ss_dssp ----------------------TCCCCCHHHHCB--C-CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHH
T ss_pred ----------------------cCCCCCHHHHcC--C-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence 012445777885 3 67899999999999999999999999999 899999999999
Q ss_pred HHHHHH
Q 025005 195 ILMRVI 200 (259)
Q Consensus 195 i~~~~~ 200 (259)
+++.++
T Consensus 120 ll~~l~ 125 (127)
T 3nqr_A 120 ILELIV 125 (127)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 986543
No 60
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.76 E-value=1.5e-17 Score=124.34 Aligned_cols=130 Identities=21% Similarity=0.319 Sum_probs=107.2
Q ss_pred cccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 025005 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (259)
Q Consensus 40 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (259)
..+++++|.++++++.+++++.+|++.|.+++++.+||+| +|+++|+++..+++......+....
T Consensus 4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~-------------- 69 (160)
T 2o16_A 4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSA-------------- 69 (160)
T ss_dssp CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC-----------------
T ss_pred cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccc--------------
Confidence 5789999999999999999999999999999999999999 6999999999999876443110000
Q ss_pred cccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHH
Q 025005 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 198 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~ 198 (259)
.........++.++|. +++.++.+++++.++++.|.+.+.+.+||+|+|+++|+||..|+++.
T Consensus 70 ---------------~~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~ 132 (160)
T 2o16_A 70 ---------------QGDSLAFETPLFEVMH--TDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTI 132 (160)
T ss_dssp ---------------------CCCBHHHHSC--SCEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHH
T ss_pred ---------------cccchhcccCHHHHhc--CCCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHH
Confidence 0001123556788887 67999999999999999999999999999999999999999999865
Q ss_pred HH
Q 025005 199 VI 200 (259)
Q Consensus 199 ~~ 200 (259)
+.
T Consensus 133 ~~ 134 (160)
T 2o16_A 133 AI 134 (160)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 61
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.75 E-value=1e-17 Score=130.12 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=109.4
Q ss_pred hcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhC---CccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHH
Q 025005 34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG---KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKA 109 (259)
Q Consensus 34 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~---~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~ 109 (259)
....+.+.+++++|++++++++++.++.+|++.|.++ +++.+||+| +++++|+++..+++..
T Consensus 47 ~~l~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-------------- 112 (205)
T 3kxr_A 47 LYDQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH-------------- 112 (205)
T ss_dssp HHHHSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS--------------
T ss_pred HHhCCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC--------------
Confidence 3447888999999999999999999999999999987 789999999 6999999999998742
Q ss_pred HHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeE
Q 025005 110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG 188 (259)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~G 188 (259)
....+++++|. +++.++++++++.++++.|.+++.+.+||+| +|+++|
T Consensus 113 -----------------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvG 161 (205)
T 3kxr_A 113 -----------------------------EPHEPLISLLS--EDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIG 161 (205)
T ss_dssp -----------------------------CTTSBGGGGCC--SSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEE
T ss_pred -----------------------------CCcchHHHHhc--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEE
Confidence 12346889997 6789999999999999999999999999999 899999
Q ss_pred EeehHHHHHHHHhc
Q 025005 189 ILTSKDILMRVISQ 202 (259)
Q Consensus 189 iit~~di~~~~~~~ 202 (259)
+||..|++..+...
T Consensus 162 iIT~~Dil~~i~~e 175 (205)
T 3kxr_A 162 RVTLRAATALVREH 175 (205)
T ss_dssp EEEHHHHHHHHHHH
T ss_pred EEEHHHHHHHHHHH
Confidence 99999999666543
No 62
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.75 E-value=1.3e-17 Score=124.10 Aligned_cols=137 Identities=17% Similarity=0.237 Sum_probs=107.3
Q ss_pred cccccccc------CCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 025005 41 TPVSKVMT------RNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (259)
Q Consensus 41 ~~v~~~~~------~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (259)
.+++++|. ++++++++++++.+|++.|.+++++.+||.++|+++|+++..|++..+...
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~~~--------------- 71 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVVLQ--------------- 71 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSGGG---------------
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHHhc---------------
Confidence 57999998 556999999999999999999999999997789999999999998753210
Q ss_pred hhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHH
Q 025005 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKD 194 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~d 194 (259)
. ......+++++|. +++.++.+++++.+++++|.+++.+.+||+|+|+++|++|..|
T Consensus 72 -----~----------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~d 128 (157)
T 4fry_A 72 -----E----------------RSSKATRVEEIMT--AKVRYVEPSQSTDECMALMTEHRMRHLPVLDGGKLIGLISIGD 128 (157)
T ss_dssp -----T----------------CCSSSCBHHHHSB--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHH
T ss_pred -----c----------------CCccccCHHHHcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHH
Confidence 0 0013456788887 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccccccccC
Q 025005 195 ILMRVISQNLPADSTLVEKVMT 216 (259)
Q Consensus 195 i~~~~~~~~~~~~~~~v~~~~~ 216 (259)
+++.+...... ....+++++.
T Consensus 129 il~~l~~~~~~-~~~~~~~~i~ 149 (157)
T 4fry_A 129 LVKSVIADQQF-TISQLEHYIH 149 (157)
T ss_dssp HHHHHHTTCCC-CCC-------
T ss_pred HHHHHHHHHHh-hHHHHHhhcc
Confidence 99666554332 2344455444
No 63
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.75 E-value=6.3e-18 Score=125.94 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=101.3
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCce-EEEeeCCeeeEEeehHHHHHHHHhc--------------C
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSS-AVVTVENKPRGILTSKDILMRVISQ--------------N 203 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~-~~V~~~g~~~Giit~~di~~~~~~~--------------~ 203 (259)
+...+++++|. +++.++.+++++.++++.|.+.+.+. +||+|+++++|++|..|+++.+... .
T Consensus 13 ~~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~ 90 (157)
T 1o50_A 13 MKVKDVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSM 90 (157)
T ss_dssp CBHHHHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CC
T ss_pred hccccHhhccc--CCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHH
Confidence 34455788997 67999999999999999999999999 9999944999999999998554311 1
Q ss_pred CCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 204 LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 204 ~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
......+++++|.+ +.++++++++.+|++.|.+++.+++||+|++|+++|+||+
T Consensus 91 ~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~ 144 (157)
T 1o50_A 91 KRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNS 144 (157)
T ss_dssp CCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEH
T ss_pred HHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEH
Confidence 12345789999999 9999999999999999999999999999989999999996
No 64
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.75 E-value=1.4e-17 Score=124.02 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=110.3
Q ss_pred CCCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccE-eeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 025005 36 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRH-LPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (259)
Q Consensus 36 ~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~-~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (259)
..+...+++++|.++++++.+++++.+|++.|.+++++. +||+|+++++|+++..|++.......
T Consensus 11 ~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~~~~~-------------- 76 (157)
T 1o50_A 11 HHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF-------------- 76 (157)
T ss_dssp TTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH--------------
T ss_pred hhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHHhhhH--------------
Confidence 467788999999999999999999999999999999999 99999559999999999987643211
Q ss_pred hhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehH
Q 025005 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 193 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~ 193 (259)
.. ... .... ...........+++++|. + +.++++++++.++++.|.+.+.+.+||+| +|+++|++|..
T Consensus 77 ~~---~~~----~~~~-~~~~~~~~~~~~v~~im~--~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~ 145 (157)
T 1o50_A 77 FG---FIP----KEEL-IRSSMKRLIAKNASEIML--D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSL 145 (157)
T ss_dssp HC---CCC------------CCCCCSSCBHHHHCB--C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHH
T ss_pred Hh---hhc----cHHH-HHHHHHHHcCCcHHHHcC--C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHH
Confidence 00 000 0000 000001123456788887 6 89999999999999999999999999999 99999999999
Q ss_pred HHHHHHHh
Q 025005 194 DILMRVIS 201 (259)
Q Consensus 194 di~~~~~~ 201 (259)
|+++.+..
T Consensus 146 dll~~l~~ 153 (157)
T 1o50_A 146 EILLALWK 153 (157)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99865543
No 65
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.75 E-value=9.2e-18 Score=121.08 Aligned_cols=121 Identities=9% Similarity=0.126 Sum_probs=99.8
Q ss_pred ccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 41 TPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 41 ~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d--~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
.+++++|++ ++++++++.++.+|++.|.+++++++||++ +++++|+++..|++...... .
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~-------~--------- 65 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK-------K--------- 65 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS-------S---------
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc-------C---------
Confidence 578999964 789999999999999999999999999996 38999999999998763210 0
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di 195 (259)
. ....+++++| +++.++++++++.++++.|.+++.+.+||+| +|+++|++|..|+
T Consensus 66 -------~--------------~~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Di 121 (130)
T 3hf7_A 66 -------E--------------FTKEIMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDI 121 (130)
T ss_dssp -------C--------------CCHHHHHHHS---BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHH
T ss_pred -------c--------------cchhhHHHhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHH
Confidence 0 0011245556 3478899999999999999999999999998 8999999999999
Q ss_pred HHHHHh
Q 025005 196 LMRVIS 201 (259)
Q Consensus 196 ~~~~~~ 201 (259)
++.+..
T Consensus 122 l~~l~g 127 (130)
T 3hf7_A 122 LEEIVG 127 (130)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 976654
No 66
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.75 E-value=2.9e-18 Score=126.75 Aligned_cols=118 Identities=25% Similarity=0.324 Sum_probs=99.3
Q ss_pred CCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhc------------CCCCc
Q 025005 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQ------------NLPAD 207 (259)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~------------~~~~~ 207 (259)
..+++++|.+..++.++.++.++.++++.|.+++++++||++ +|+++|++|..|+++.+... .....
T Consensus 4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 83 (152)
T 4gqw_A 4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTN 83 (152)
T ss_dssp CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----
T ss_pred eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhc
Confidence 346788997433799999999999999999999999999999 79999999999996321100 01123
Q ss_pred ccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 208 STLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 208 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
..+++++|.+++.++++++++.+|++.|.+++.+++||+|++|+++|+||+
T Consensus 84 ~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~ 134 (152)
T 4gqw_A 84 GKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITR 134 (152)
T ss_dssp CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEH
T ss_pred cccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEH
Confidence 478999999989999999999999999999999999999999999999996
No 67
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.75 E-value=1.9e-17 Score=120.54 Aligned_cols=124 Identities=21% Similarity=0.235 Sum_probs=107.0
Q ss_pred CCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 025005 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (259)
Q Consensus 37 ~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 115 (259)
.+...+++++|.++++++++++++.+|++.|.+++++++||+| +|+++|+++..+++......
T Consensus 3 ~l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~---------------- 66 (138)
T 2yzi_A 3 MDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVP---------------- 66 (138)
T ss_dssp CCTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT----------------
T ss_pred chhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhc----------------
Confidence 5667899999999999999999999999999999999999999 79999999999997531110
Q ss_pred hcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHH
Q 025005 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD 194 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~d 194 (259)
......++.++|. +++.++++++++.++++.|.+.+.+++ |++ +|+++|++|..|
T Consensus 67 ---------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~d 122 (138)
T 2yzi_A 67 ---------------------GLPYDIPVERIMT--RNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSD 122 (138)
T ss_dssp ---------------------CCCTTSBGGGTCB--CSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHH
T ss_pred ---------------------CCcccCCHHHHhh--CCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHH
Confidence 0012456888897 679999999999999999999999999 999 999999999999
Q ss_pred HHHHHH
Q 025005 195 ILMRVI 200 (259)
Q Consensus 195 i~~~~~ 200 (259)
+++.+.
T Consensus 123 il~~~~ 128 (138)
T 2yzi_A 123 LLEASR 128 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 985554
No 68
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.75 E-value=2.6e-17 Score=122.89 Aligned_cols=126 Identities=16% Similarity=0.252 Sum_probs=107.1
Q ss_pred CCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 38 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
+...+++++|.+ ++++.+++++.+|++.|.+++++.+||+| +|+++|+++..|++..+...
T Consensus 14 l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------- 75 (159)
T 3fv6_A 14 LKKLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQ----------------- 75 (159)
T ss_dssp HTTCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSC-----------------
T ss_pred HhhCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhcc-----------------
Confidence 456799999987 55999999999999999999999999999 69999999999998753110
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CC---eeeEEeeh
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-EN---KPRGILTS 192 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g---~~~Giit~ 192 (259)
......+++++|.+.+++.++.+++++.++++.|.+.+.+.+||+| +| +++|++|.
T Consensus 76 --------------------~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~ 135 (159)
T 3fv6_A 76 --------------------QELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTK 135 (159)
T ss_dssp --------------------SCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEH
T ss_pred --------------------CcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEH
Confidence 0123557889997323789999999999999999999999999999 77 99999999
Q ss_pred HHHHHHHHh
Q 025005 193 KDILMRVIS 201 (259)
Q Consensus 193 ~di~~~~~~ 201 (259)
.|+++.+..
T Consensus 136 ~dil~~l~~ 144 (159)
T 3fv6_A 136 TNMTKILVS 144 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999966654
No 69
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.75 E-value=2.4e-17 Score=120.43 Aligned_cols=118 Identities=15% Similarity=0.209 Sum_probs=102.7
Q ss_pred cccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeC-C--eEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN-G--EVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 40 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~-~--~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
..+++++|.++++++.+++++.+|++.|.+++++++||+|+ + +++|+++..|++..+...
T Consensus 4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~----------------- 66 (141)
T 2rih_A 4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQR----------------- 66 (141)
T ss_dssp -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTT-----------------
T ss_pred ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcC-----------------
Confidence 46899999999999999999999999999999999999995 6 899999999998753210
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di 195 (259)
.....++.++|. +++.+++++ ++.++++.|.+.+.+.+||+| +|+++|++|..|+
T Consensus 67 ---------------------~~~~~~v~~~m~--~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dl 122 (141)
T 2rih_A 67 ---------------------LDLDGPAMPIAN--SPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDL 122 (141)
T ss_dssp ---------------------CCTTSBSGGGCB--CCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred ---------------------CCCCCCHHHHcC--CCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHH
Confidence 012456888987 679999999 999999999999999999999 8999999999999
Q ss_pred HHH
Q 025005 196 LMR 198 (259)
Q Consensus 196 ~~~ 198 (259)
++.
T Consensus 123 l~~ 125 (141)
T 2rih_A 123 CFE 125 (141)
T ss_dssp HSC
T ss_pred HHH
Confidence 743
No 70
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.75 E-value=2e-18 Score=125.54 Aligned_cols=121 Identities=12% Similarity=0.180 Sum_probs=102.4
Q ss_pred ccccccccc--CCCeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 025005 40 ETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (259)
Q Consensus 40 ~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 115 (259)
+.+++++|+ +++++++++.++.+|++.|.+++++++||++ + ++++|+++..|++..+..
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~----------------- 64 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILK----------------- 64 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGS-----------------
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHh-----------------
Confidence 568999998 6789999999999999999999999999999 4 799999999999864210
Q ss_pred hcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHH
Q 025005 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKD 194 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~d 194 (259)
......+++++|. + +.++.+++++.++++.|.+++.+.+||+| +|+++|++|..|
T Consensus 65 ---------------------~~~~~~~v~~~m~--~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~D 120 (136)
T 3lfr_A 65 ---------------------ADGDSDDVKKLLR--P-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIED 120 (136)
T ss_dssp ---------------------SSGGGCCGGGTCB--C-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHH
T ss_pred ---------------------ccCCCcCHHHHcC--C-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHH
Confidence 0023456888995 3 89999999999999999999999999999 899999999999
Q ss_pred HHHHHHh
Q 025005 195 ILMRVIS 201 (259)
Q Consensus 195 i~~~~~~ 201 (259)
+++.+..
T Consensus 121 il~~l~~ 127 (136)
T 3lfr_A 121 VLEQIVG 127 (136)
T ss_dssp HHTTC--
T ss_pred HHHHHhC
Confidence 9855443
No 71
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.74 E-value=1.5e-17 Score=123.14 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=98.5
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccC--
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-- 216 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~-- 216 (259)
...+++++ +++.++.+++++.++++.|.+.+.+.+||+| +|+++|++|..|+++.+..........++.++|.
T Consensus 21 ~~~~v~~~----~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~~~~~~~~~v~~~m~~~ 96 (152)
T 2uv4_A 21 EELQIGTY----ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHR 96 (152)
T ss_dssp HHHTCSBC----SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCSSCCCTTSBGGGGGGTC
T ss_pred HHccCCcc----CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcchhhhhhcchHHHHHhhh
Confidence 34446665 3588899999999999999999999999999 8999999999999855443322233578899996
Q ss_pred ----CCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 217 ----PNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 217 ----~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+++.++.+++++.+|++.|.+++.+++||+|++|+++|+||+
T Consensus 97 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~ 142 (152)
T 2uv4_A 97 SHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSL 142 (152)
T ss_dssp CHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred hcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEEEH
Confidence 688999999999999999999999999999988999999996
No 72
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.74 E-value=1.3e-17 Score=121.42 Aligned_cols=123 Identities=26% Similarity=0.350 Sum_probs=104.8
Q ss_pred CCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHH-HHHHHHHHHHHhhhhHHHHHHhh
Q 025005 38 LEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKC-LYDAIARMERAAEKGKAIAAAVE 115 (259)
Q Consensus 38 ~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i-~~~~~~~~~~~~~~~~~~~~~~~ 115 (259)
+.+.+++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|+++..++ +..+..
T Consensus 5 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------- 67 (138)
T 2p9m_A 5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRD----------------- 67 (138)
T ss_dssp CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTT-----------------
T ss_pred cccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhh-----------------
Confidence 457899999999999999999999999999999999999999 6999999999999 654110
Q ss_pred hcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcC-----CceEEEee-CCeeeEE
Q 025005 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELR-----LSSAVVTV-ENKPRGI 189 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~-----~~~~~V~~-~g~~~Gi 189 (259)
......+++++|. +++.++++++++.++++.|.+.+ .+.+||+| +|+++|+
T Consensus 68 ---------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Gi 124 (138)
T 2p9m_A 68 ---------------------KYTLETTIGDVMT--KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGI 124 (138)
T ss_dssp ---------------------CCCSSCBHHHHSC--SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEE
T ss_pred ---------------------cccCCcCHHHHhC--CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEE
Confidence 0123445777886 67899999999999999999999 99999999 9999999
Q ss_pred eehHHHHHHHH
Q 025005 190 LTSKDILMRVI 200 (259)
Q Consensus 190 it~~di~~~~~ 200 (259)
+|..|+++.+.
T Consensus 125 it~~dll~~~~ 135 (138)
T 2p9m_A 125 ISDGDIIRTIS 135 (138)
T ss_dssp EEHHHHHHHHH
T ss_pred EEHHHHHHHHH
Confidence 99999985543
No 73
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.74 E-value=2e-18 Score=131.43 Aligned_cols=117 Identities=21% Similarity=0.290 Sum_probs=98.8
Q ss_pred CCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcC-----------------
Q 025005 142 PSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN----------------- 203 (259)
Q Consensus 142 ~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~----------------- 203 (259)
.+++++|.+..++.++.+++++.+++++|.+++++++||++ +|+++|++|.+|+++.....+
T Consensus 4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (180)
T 3sl7_A 4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWK 83 (180)
T ss_dssp CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCC
T ss_pred eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhh
Confidence 35677887322799999999999999999999999999999 899999999999973211100
Q ss_pred ---------CCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 204 ---------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 204 ---------~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
......+++++|.+++.++++++++.+|+++|.+++.+++||+|++|+++|+||+
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~ 147 (180)
T 3sl7_A 84 TFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTR 147 (180)
T ss_dssp SHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEH
T ss_pred hhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEH
Confidence 0123578999999999999999999999999999999999999999999999997
No 74
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.74 E-value=2.9e-17 Score=127.66 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=100.7
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHc---CCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccc
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL---RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKV 214 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~---~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~ 214 (259)
+...+++++|+ +++++++++.++.++++.|.+. +++.+||++ +|+++|++|.+|++. . ....+++++
T Consensus 51 ~~~~~v~~iM~--~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~------~-~~~~~v~~i 121 (205)
T 3kxr_A 51 YSENEIGRYTD--HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFK------H-EPHEPLISL 121 (205)
T ss_dssp SCTTCGGGGCB--CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTT------S-CTTSBGGGG
T ss_pred CCcchHHhhcc--CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHh------C-CCcchHHHH
Confidence 45678999998 6799999999999999999986 788999999 899999999999862 1 235789999
Q ss_pred cCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 215 MTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 215 ~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
|.+++.++++++++.+|++.|.+++.+.+||||++|+++|+||+
T Consensus 122 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~ 165 (205)
T 3kxr_A 122 LSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTL 165 (205)
T ss_dssp CCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEH
T ss_pred hcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEH
Confidence 99999999999999999999999999999999999999999996
No 75
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=122.72 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=103.9
Q ss_pred CCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee---CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHH
Q 025005 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113 (259)
Q Consensus 37 ~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d---~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~ 113 (259)
...+.+++++|.++++++++++++.+|++.|.+++++++||+| +|+++|+++..+++..........
T Consensus 9 ~~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~---------- 78 (164)
T 2pfi_A 9 GSHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSR---------- 78 (164)
T ss_dssp -CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------------
T ss_pred cccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcccc----------
Confidence 4557899999999999999999999999999999999999998 489999999999987532110000
Q ss_pred hhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCC----CCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEE
Q 025005 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGI 189 (259)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Gi 189 (259)
......++.++|... ..+.++.+++++.++++.|.+.+.+++||+++|+++|+
T Consensus 79 -----------------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Gi 135 (164)
T 2pfi_A 79 -----------------------APGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGC 135 (164)
T ss_dssp -------------------------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEE
T ss_pred -----------------------CCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEE
Confidence 000122344444311 11688999999999999999999999999999999999
Q ss_pred eehHHHHHHHHh
Q 025005 190 LTSKDILMRVIS 201 (259)
Q Consensus 190 it~~di~~~~~~ 201 (259)
+|..|+++.+..
T Consensus 136 it~~dil~~~~~ 147 (164)
T 2pfi_A 136 VSWVEMKKAISN 147 (164)
T ss_dssp EEHHHHHHHHHH
T ss_pred EEHHHHHHHHHh
Confidence 999999966554
No 76
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.73 E-value=1.7e-17 Score=123.48 Aligned_cols=118 Identities=14% Similarity=0.211 Sum_probs=100.0
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcC----CCCccccccc
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQN----LPADSTLVEK 213 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~----~~~~~~~v~~ 213 (259)
+...+++++|.+.+++.++.++.++.++++.|.+++++.+||++ +|+++|++|..|+++.+.... ......++++
T Consensus 8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~ 87 (157)
T 2emq_A 8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEE 87 (157)
T ss_dssp --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGG
T ss_pred HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHH
Confidence 45677899997323799999999999999999999999999999 899999999999974332211 1123578999
Q ss_pred ccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 214 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+|.+++.++++++++.+|++.|.+++. +||+|++|+++|+||+
T Consensus 88 ~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~ 130 (157)
T 2emq_A 88 VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTR 130 (157)
T ss_dssp TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEH
T ss_pred HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEH
Confidence 999999999999999999999999987 9999989999999997
No 77
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.73 E-value=1.8e-17 Score=122.41 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=105.9
Q ss_pred CCccccccccc--CCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 025005 38 LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (259)
Q Consensus 38 ~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (259)
+.+.+++++|. .+++++.+++++.+|++.|.+++++++||+| +|+++|+++..+++..+...
T Consensus 12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~--------------- 76 (150)
T 3lqn_A 12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGL--------------- 76 (150)
T ss_dssp HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCS---------------
T ss_pred hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhh---------------
Confidence 44789999999 4699999999999999999999999999998 79999999999998762210
Q ss_pred hhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehH
Q 025005 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 193 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~ 193 (259)
.+. ........+++++|. +++.++.+++++.++++.|.++++ +||++ +|+++|++|..
T Consensus 77 ------~~~-----------~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~ 135 (150)
T 3lqn_A 77 ------ERI-----------EFERLEEMKVEQVMK--QDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRR 135 (150)
T ss_dssp ------SSB-----------CGGGGGGCBGGGTCB--SSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHH
T ss_pred ------ccc-----------chhHHhcCCHHHHhc--CCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHH
Confidence 000 001123567889997 678999999999999999999886 99999 89999999999
Q ss_pred HHHHHHHh
Q 025005 194 DILMRVIS 201 (259)
Q Consensus 194 di~~~~~~ 201 (259)
|+++.+..
T Consensus 136 dil~~l~~ 143 (150)
T 3lqn_A 136 AILKLLNK 143 (150)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99965544
No 78
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.73 E-value=3.1e-18 Score=127.55 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=102.6
Q ss_pred cCCCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee-C-CeEEEEEeHHHHHHHHHHHHHHHhhhhHHH
Q 025005 35 ELNLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-N-GEVIALLDIAKCLYDAIARMERAAEKGKAI 110 (259)
Q Consensus 35 ~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~-~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~ 110 (259)
-..+.+.+++++|++ +++++++++++.+|++.|.+++++++||++ + ++++|+++..|++.....
T Consensus 32 ~~~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~------------ 99 (156)
T 3oi8_A 32 VLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN------------ 99 (156)
T ss_dssp HHHHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC------------
T ss_pred HhccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc------------
Confidence 346778999999986 799999999999999999999999999998 4 599999999999864110
Q ss_pred HHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEE
Q 025005 111 AAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGI 189 (259)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Gi 189 (259)
-...+++++|. + +.++++++++.++++.|.+++.+.+||+| +|+++|+
T Consensus 100 ----------------------------~~~~~v~~im~--~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Gi 148 (156)
T 3oi8_A 100 ----------------------------PEQFHLKSILR--P-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGL 148 (156)
T ss_dssp ----------------------------GGGCCHHHHCB--C-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEE
T ss_pred ----------------------------CCcccHHHHcC--C-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEE
Confidence 02345777885 3 88999999999999999999999999999 8999999
Q ss_pred eehHHHH
Q 025005 190 LTSKDIL 196 (259)
Q Consensus 190 it~~di~ 196 (259)
+|..|++
T Consensus 149 vt~~Dil 155 (156)
T 3oi8_A 149 VTFEDII 155 (156)
T ss_dssp EEHHHHC
T ss_pred EEHHHhc
Confidence 9999985
No 79
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.73 E-value=2.4e-16 Score=125.65 Aligned_cols=160 Identities=15% Similarity=0.142 Sum_probs=109.9
Q ss_pred CCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeC---CeEEEEEeHHHHHHHHHHHHHHHhhh-------
Q 025005 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN---GEVIALLDIAKCLYDAIARMERAAEK------- 106 (259)
Q Consensus 37 ~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~---~~~vGvi~~~~i~~~~~~~~~~~~~~------- 106 (259)
...+.+|+|+|+++++++.+++++.+|.++|.+++++++||+|+ ++++|+|+..|++..+..........
T Consensus 9 ~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~ 88 (250)
T 2d4z_A 9 NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA 88 (250)
T ss_dssp CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred ccCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence 44578999999999999999999999999999999999999984 58999999999998755432111100
Q ss_pred ----------------hHHHHHHhhhcc-----cc-----c-------------------------------------CC
Q 025005 107 ----------------GKAIAAAVEGVE-----KH-----W-------------------------------------GT 123 (259)
Q Consensus 107 ----------------~~~~~~~~~~~~-----~~-----~-------------------------------------~~ 123 (259)
............ +. . ..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (250)
T 2d4z_A 89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE 168 (250)
T ss_dssp CCC---------------------------------------------------------------------------CC
T ss_pred cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence 000000000000 00 0 00
Q ss_pred CCCChhhHHHHHHHhhcCCCc--c-cccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHH
Q 025005 124 SISGPNTFIETLRERMFRPSL--S-TIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRV 199 (259)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~v--~-~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~ 199 (259)
-...+++... ........++ . .+|. +.++++.+++++.++..+|...+.+++||++.|+++|+||++|+++.+
T Consensus 169 ~~i~~~~~~~-~~~~~l~~~Vdl~~~~md--~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai 244 (250)
T 2d4z_A 169 EMLTLEEIYR-WEQREKNVVVNFETCRID--QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAI 244 (250)
T ss_dssp SCCBHHHHHH-HHHHHTTCBCCTTSSCEE--CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred cccChhhhhh-HHHHhcCceecccccccc--CCCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHH
Confidence 0001111111 1111233444 3 3676 789999999999999999999999999999999999999999998544
No 80
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.73 E-value=2.3e-17 Score=121.92 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=105.4
Q ss_pred cccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 40 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
..+++++|.+ +++++++++++.+|++.|.+++++++||+| +++++|+++..+++........ ..
T Consensus 4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~-----~~-------- 70 (152)
T 4gqw_A 4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDST-----WK-------- 70 (152)
T ss_dssp CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----C-----CH--------
T ss_pred eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCc-----cc--------
Confidence 5789999988 899999999999999999999999999999 5899999999999754211000 00
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di 195 (259)
...............++.++|. +++.++.+++++.++++.|.+.+.+.+||++ +|+++|++|..|+
T Consensus 71 -----------~~~~~~~~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~di 137 (152)
T 4gqw_A 71 -----------TFNAVQKLLSKTNGKLVGDLMT--PAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNV 137 (152)
T ss_dssp -----------HHHHHHTC-----CCBHHHHSE--ESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHH
T ss_pred -----------chHHHHHHHHHhccccHHHhcC--CCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHH
Confidence 0000000001123456788887 5688999999999999999999999999999 8999999999999
Q ss_pred HHHHHhc
Q 025005 196 LMRVISQ 202 (259)
Q Consensus 196 ~~~~~~~ 202 (259)
++.+...
T Consensus 138 l~~~~~~ 144 (152)
T 4gqw_A 138 VRAALQI 144 (152)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 9666543
No 81
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.73 E-value=4.3e-17 Score=120.33 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=102.5
Q ss_pred cccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 40 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
..+++++|.+ +++++++++++.+|++.|.+++++++||+| +|+++|+++..|++..+...
T Consensus 27 ~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~----------------- 89 (149)
T 3k2v_A 27 LLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTG----------------- 89 (149)
T ss_dssp TSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSS-----------------
T ss_pred ccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcC-----------------
Confidence 3599999999 999999999999999999999999999999 69999999999998752110
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
......+++++|. +++.++.+++++.++++.|.+++.+.+||+|+++++|++|..|++
T Consensus 90 --------------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil 147 (149)
T 3k2v_A 90 --------------------VDMRDASIADVMT--RGGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLL 147 (149)
T ss_dssp --------------------SCCTTCBHHHHSE--ESCCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHT
T ss_pred --------------------CCcccCcHHHHcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhh
Confidence 0013456778886 668999999999999999999999999999966999999999986
No 82
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.72 E-value=1.2e-17 Score=124.70 Aligned_cols=118 Identities=14% Similarity=0.231 Sum_probs=100.6
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCC----CCccccccc
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNL----PADSTLVEK 213 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~----~~~~~~v~~ 213 (259)
+...+++++|.+..++.++.++.++.++++.|.+++++.+||+| +|+++|++|..|+++.+..... .....++++
T Consensus 11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~ 90 (159)
T 1yav_A 11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE 90 (159)
T ss_dssp CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHH
Confidence 34567888997222799999999999999999999999999999 8999999999999854433221 023578999
Q ss_pred ccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 214 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+|.+++.++.+++++.+|++.|.++++ +||+|++|+++|+||+
T Consensus 91 ~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~ 133 (159)
T 1yav_A 91 VMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTR 133 (159)
T ss_dssp HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEH
T ss_pred hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEH
Confidence 999999999999999999999999987 9999989999999997
No 83
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.72 E-value=2.2e-17 Score=126.13 Aligned_cols=119 Identities=13% Similarity=0.149 Sum_probs=101.6
Q ss_pred hcCCCcccccCCCCC--eeEe--CCCchHHHHHHHHHHcCCceEEEe--e-CCeeeEEeehHHHHHHHHhcC--------
Q 025005 139 MFRPSLSTIIPEKSK--VVTI--SPTDTVLMATKKMLELRLSSAVVT--V-ENKPRGILTSKDILMRVISQN-------- 203 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~--~~~v--~~~~~l~~~~~~~~~~~~~~~~V~--~-~g~~~Giit~~di~~~~~~~~-------- 203 (259)
....+++++|.+..+ +.++ .++.++.++++.|.+++++.+||+ | +|+++|++|..|+++.+....
T Consensus 8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~ 87 (185)
T 2j9l_A 8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS 87 (185)
T ss_dssp -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence 456778999974221 7788 999999999999999999999999 6 899999999999986554321
Q ss_pred ---------------CCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 204 ---------------LPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 204 ---------------~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
......+++++|.+++.++++++++.+|++.|.+++.+++||+| +|+++|+||+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~ 156 (185)
T 2j9l_A 88 TSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITK 156 (185)
T ss_dssp TCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEH
T ss_pred cceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEH
Confidence 11235789999998999999999999999999999999999999 8999999997
No 84
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.71 E-value=4.5e-17 Score=119.23 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=102.3
Q ss_pred CCcccccc---cccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHH
Q 025005 38 LEETPVSK---VMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113 (259)
Q Consensus 38 ~~~~~v~~---~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~ 113 (259)
+.+.++++ +|.++++++.+++++.+|++.|.+++++.+||+| +|+++|+++..+++..+....
T Consensus 5 ~~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~------------- 71 (144)
T 2nyc_A 5 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGI------------- 71 (144)
T ss_dssp GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC--------------
T ss_pred hhhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccc-------------
Confidence 34677888 8889999999999999999999999999999999 699999999999987532100
Q ss_pred hhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCC----CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeE
Q 025005 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG 188 (259)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~G 188 (259)
......++.++|.+. +++.++++++++.++++.|.+.+.+.+||+| +|+++|
T Consensus 72 -----------------------~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~G 128 (144)
T 2nyc_A 72 -----------------------YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVG 128 (144)
T ss_dssp --------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEE
T ss_pred -----------------------cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEE
Confidence 001123455555421 1588999999999999999999999999999 899999
Q ss_pred EeehHHHHHHHHh
Q 025005 189 ILTSKDILMRVIS 201 (259)
Q Consensus 189 iit~~di~~~~~~ 201 (259)
++|..|+++.+..
T Consensus 129 iit~~dil~~l~~ 141 (144)
T 2nyc_A 129 VLTLSDILKYILL 141 (144)
T ss_dssp EEEHHHHHHHHHH
T ss_pred EEEHHHHHHHHHh
Confidence 9999999866654
No 85
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.71 E-value=1e-16 Score=119.26 Aligned_cols=130 Identities=13% Similarity=0.228 Sum_probs=105.3
Q ss_pred CCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHH
Q 025005 37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113 (259)
Q Consensus 37 ~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~ 113 (259)
.+.+.+++++|.+ +++++.++.++.+|++.|.+++++++||+| +|+++|+++..+++......
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~-------------- 72 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGL-------------- 72 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCS--------------
T ss_pred hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcc--------------
Confidence 4567899999986 899999999999999999999999999999 69999999999998652100
Q ss_pred hhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeeh
Q 025005 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS 192 (259)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~ 192 (259)
..+. .......++.++|. +++.++++++++.++++.|.+.++ +||++ +|+++|++|.
T Consensus 73 -----~~~~-------------~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~ 130 (157)
T 2emq_A 73 -----ERIE-------------FERLETMKVEEVMN--RNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTR 130 (157)
T ss_dssp -----SSBC-------------GGGGGTCBGGGTCB--CCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEH
T ss_pred -----cccc-------------hHHhcCCcHHHHhC--CCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEH
Confidence 0000 01133567888997 679999999999999999999887 99999 8999999999
Q ss_pred HHHHHHHHhc
Q 025005 193 KDILMRVISQ 202 (259)
Q Consensus 193 ~di~~~~~~~ 202 (259)
.|+++.+...
T Consensus 131 ~dil~~~~~~ 140 (157)
T 2emq_A 131 REVLKQLNKQ 140 (157)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999655543
No 86
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.71 E-value=9.5e-17 Score=119.33 Aligned_cols=128 Identities=19% Similarity=0.204 Sum_probs=105.9
Q ss_pred CCccccccccc--CCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 025005 38 LEETPVSKVMT--RNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (259)
Q Consensus 38 ~~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (259)
+...+++++|. ++++++++++++.+|++.|.+++++++||+| +|+++|+++..|++........
T Consensus 12 l~~~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~------------- 78 (156)
T 3ctu_A 12 FLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDL------------- 78 (156)
T ss_dssp HHHTTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCCCEEEEEEcHHHHHHHHHhccc-------------
Confidence 34678999999 6899999999999999999999999999998 6999999999999876432100
Q ss_pred hhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehH
Q 025005 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSK 193 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~ 193 (259)
........+++++|. +++.++.+++++.++++.|.+++ .+||++ +|+++|++|..
T Consensus 79 --------------------~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~ 134 (156)
T 3ctu_A 79 --------------------SQEIMADTDIVHMTK--TDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRK 134 (156)
T ss_dssp --------------------CHHHHTTSBGGGGCB--CSCCCBCSSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETT
T ss_pred --------------------cccccccCcHHHhcc--CCceeeCCCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHH
Confidence 001123567889997 67899999999999999999876 699999 89999999999
Q ss_pred HHHHHHHhc
Q 025005 194 DILMRVISQ 202 (259)
Q Consensus 194 di~~~~~~~ 202 (259)
|+++.+...
T Consensus 135 dil~~l~~~ 143 (156)
T 3ctu_A 135 SILKAVNAL 143 (156)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999665543
No 87
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.71 E-value=1.4e-16 Score=121.72 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=109.1
Q ss_pred CCcccccccccCC----CeEE--eCcchHHHHHHHHHhCCccEeeEe--e-CCeEEEEEeHHHHHHHHHHHHHHHhhhhH
Q 025005 38 LEETPVSKVMTRN----PTFV--LSDTLAVEALQKMVQGKFRHLPVV--E-NGEVIALLDIAKCLYDAIARMERAAEKGK 108 (259)
Q Consensus 38 ~~~~~v~~~~~~~----~~~v--~~~~~l~~a~~~~~~~~~~~~pV~--d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~ 108 (259)
..+.+++++|.+. ++++ .++.++.+|++.|.+++++++||+ | +|+++|+|+..+++........... .
T Consensus 8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~-~-- 84 (185)
T 2j9l_A 8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQD-G-- 84 (185)
T ss_dssp -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCS-C--
T ss_pred hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCC-C--
Confidence 3478999999887 7888 999999999999999999999999 5 6999999999999876443110000 0
Q ss_pred HHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeE
Q 025005 109 AIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRG 188 (259)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~G 188 (259)
........+... .. .. ........++.++|. +++.++.+++++.++++.|.+.+.+++||+++|+++|
T Consensus 85 ----~~~~~~~~~~~~-~~-~~----~~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vG 152 (185)
T 2j9l_A 85 ----VVSTSIIYFTEH-SP-PL----PPYTPPTLKLRNILD--LSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLG 152 (185)
T ss_dssp ----CCTTCEEECSSS-CC-CC----CTTCCCCEECGGGEE--SSCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEE
T ss_pred ----ccccceeecccC-Cc-cc----ccccccCccHHHhhC--cCCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEE
Confidence 000000000000 00 00 001123456788887 6799999999999999999999999999999999999
Q ss_pred EeehHHHHHHHHhc
Q 025005 189 ILTSKDILMRVISQ 202 (259)
Q Consensus 189 iit~~di~~~~~~~ 202 (259)
+||..|+++.+...
T Consensus 153 iit~~dll~~l~~~ 166 (185)
T 2j9l_A 153 IITKKDVLKHIAQM 166 (185)
T ss_dssp EEEHHHHHHHHHHH
T ss_pred EEEHHHHHHHHHHh
Confidence 99999999666544
No 88
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.71 E-value=2.1e-17 Score=119.47 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=102.1
Q ss_pred cccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 025005 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (259)
Q Consensus 40 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (259)
-.+++++|.+++.++++++++.+|++.|.+++.+++||+| +|+++|+++..+++......
T Consensus 7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~------------------- 67 (133)
T 1y5h_A 7 MTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA------------------- 67 (133)
T ss_dssp -CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG-------------------
T ss_pred hcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhc-------------------
Confidence 4689999999999999999999999999999999999997 79999999999998421100
Q ss_pred cccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHH
Q 025005 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMR 198 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~ 198 (259)
+ ......++.++|. +++.++++++++.++++.|.+.+.+.+||+++|+++|++|..|+++.
T Consensus 68 ---~--------------~~~~~~~v~~~m~--~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~~ 128 (133)
T 1y5h_A 68 ---G--------------LDPNTATAGELAR--DSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARH 128 (133)
T ss_dssp ---T--------------CCTTTSBHHHHHT--TCCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHT
T ss_pred ---C--------------CCccccCHHHHhc--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHH
Confidence 0 0012345777786 67899999999999999999999999999999999999999999843
No 89
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.71 E-value=2.5e-17 Score=125.27 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=108.9
Q ss_pred cccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 025005 40 ETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEG 116 (259)
Q Consensus 40 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 116 (259)
..+++++|.+ +++++.+++++.+|+++|.+++++++||+| +++++|+++..+++............ ..
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~---------~~ 73 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQND---------TN 73 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC---------------------
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCc---------cc
Confidence 3588999998 899999999999999999999999999999 69999999999998532110000000 00
Q ss_pred cccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHH
Q 025005 117 VEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDI 195 (259)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di 195 (259)
+....+..... ..............+++++|. +++.++.+++++.+++++|.+.+++.+||++ +|+++|+||..|+
T Consensus 74 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~di 150 (180)
T 3sl7_A 74 LFPDVDSTWKT-FNELQKLISKTYGKVVGDLMT--PSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNV 150 (180)
T ss_dssp -------CCCS-HHHHHHHHHTTTTCBHHHHSE--ESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHH
T ss_pred ccccccchhhh-hHHHHHHHhccccccHHHHhC--CCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHH
Confidence 00000000001 111112222345667899997 6688999999999999999999999999999 9999999999999
Q ss_pred HHHHHh
Q 025005 196 LMRVIS 201 (259)
Q Consensus 196 ~~~~~~ 201 (259)
++.+..
T Consensus 151 l~~~~~ 156 (180)
T 3sl7_A 151 VRAALQ 156 (180)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 976654
No 90
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.69 E-value=2.8e-16 Score=120.09 Aligned_cols=120 Identities=20% Similarity=0.193 Sum_probs=104.2
Q ss_pred cccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 025005 40 ETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (259)
Q Consensus 40 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (259)
..+++++|.++++++.+++++.+|+++|.+++++++||+| +|+++|+++..+++......
T Consensus 8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~------------------- 68 (184)
T 1pvm_A 8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPR------------------- 68 (184)
T ss_dssp CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGG-------------------
T ss_pred ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc-------------------
Confidence 5799999999999999999999999999999999999998 69999999999998652110
Q ss_pred cccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHH
Q 025005 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~ 197 (259)
.......+++++|. +++.++.+++++.++++.|.+++.+.+||+| +|+++|++|..|+++
T Consensus 69 -----------------~~~~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~ 129 (184)
T 1pvm_A 69 -----------------NKKPDEVPIRLVMR--KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSR 129 (184)
T ss_dssp -----------------CCCGGGSBGGGTSB--SSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTT
T ss_pred -----------------ccCcccCCHHHHhC--CCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHH
Confidence 00122456888897 6789999999999999999999999999999 699999999999973
No 91
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.69 E-value=8.6e-17 Score=120.42 Aligned_cols=116 Identities=9% Similarity=0.115 Sum_probs=98.2
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee---CCeeeEEeehHHHHHHHHhcCCC---Cccccccc
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLP---ADSTLVEK 213 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~g~~~Giit~~di~~~~~~~~~~---~~~~~v~~ 213 (259)
...+++++|. +++.++.+++++.++++.|.+++++++||+| +|+++|++|..|+++.+...... ....++.+
T Consensus 11 ~~~~v~dim~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~ 88 (164)
T 2pfi_A 11 HHVRVEHFMN--HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQD 88 (164)
T ss_dssp CSCBHHHHCB--CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHH
T ss_pred cCCCHHHHcC--CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhh
Confidence 3566888997 6799999999999999999999999999998 48999999999998544332111 12367888
Q ss_pred ccCCC------CceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 214 VMTPN------PECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 214 ~~~~~------~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+|.++ +.++.+++++.+|++.|.+++.+++||+| +|+++|+||+
T Consensus 89 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~ 138 (164)
T 2pfi_A 89 ILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSW 138 (164)
T ss_dssp HHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEH
T ss_pred hhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEH
Confidence 88866 78999999999999999999999999999 8999999997
No 92
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.69 E-value=1.2e-16 Score=119.14 Aligned_cols=129 Identities=14% Similarity=0.199 Sum_probs=105.3
Q ss_pred CCCcccccccccC--CCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHH
Q 025005 37 NLEETPVSKVMTR--NPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAA 113 (259)
Q Consensus 37 ~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~ 113 (259)
.+...+++++|.+ +++++.+++++.+|++.|.+++++.+||+| +|+++|+++..+++......
T Consensus 10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~-------------- 75 (159)
T 1yav_A 10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGL-------------- 75 (159)
T ss_dssp -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCS--------------
T ss_pred HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhh--------------
Confidence 5667899999988 899999999999999999999999999999 68999999999998652110
Q ss_pred hhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeeh
Q 025005 114 VEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTS 192 (259)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~ 192 (259)
..+ -.......++.++|. +++.++.+++++.++++.|.+.++ +||++ +|+++|++|.
T Consensus 76 -----~~~-------------~~~~~~~~~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~ 133 (159)
T 1yav_A 76 -----ERI-------------EFEKLDQITVEEVML--TDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTR 133 (159)
T ss_dssp -----SSB-------------CGGGTTTSBHHHHSB--CSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEH
T ss_pred -----ccc-------------chhhhccCCHHHhcC--CCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEH
Confidence 000 000123456788887 678999999999999999998876 99999 8999999999
Q ss_pred HHHHHHHHh
Q 025005 193 KDILMRVIS 201 (259)
Q Consensus 193 ~di~~~~~~ 201 (259)
.|+++.+..
T Consensus 134 ~dil~~~~~ 142 (159)
T 1yav_A 134 RVVLKELNK 142 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999865543
No 93
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.68 E-value=2.2e-16 Score=123.53 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=97.7
Q ss_pred CCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCC
Q 025005 141 RPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNP 219 (259)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~ 219 (259)
..+..++|. +++.++.++.++.+++++|.+.+.+.+||+| +|+++|++|.+|+.+ .. ...+++++|.+++
T Consensus 12 ~~~~~~~~~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~-~~------~~~~v~~im~~~~ 82 (213)
T 1vr9_A 12 HMKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLD-LD------LDSSVFNKVSLPD 82 (213)
T ss_dssp -CBGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTT-SC------TTSBSGGGCBCTT
T ss_pred ccCHHHhhc--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHh-hc------CCCcHHHHccCCC
Confidence 345677787 7799999999999999999999999999999 899999999999963 21 1468999999999
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.++++++++.+|++.|.+++++++||+|++|+++|+||+
T Consensus 83 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~ 121 (213)
T 1vr9_A 83 FFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSL 121 (213)
T ss_dssp CCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEH
T ss_pred EEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEH
Confidence 999999999999999999999999999988999999996
No 94
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.68 E-value=3.3e-16 Score=115.94 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=102.0
Q ss_pred CCCcccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 025005 37 NLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVE 115 (259)
Q Consensus 37 ~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 115 (259)
.+.+.+++++ ++++++.+++++.+|++.|.+++++.+||+| +|+++|+++..|++......
T Consensus 19 ~l~~~~v~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~vGivt~~dl~~~~~~~---------------- 80 (152)
T 2uv4_A 19 SLEELQIGTY--ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEK---------------- 80 (152)
T ss_dssp BHHHHTCSBC--SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEHHHHHHHHHCS----------------
T ss_pred hHHHccCCcc--CCceEeCCCCcHHHHHHHHHHcCCceEeEECCCCcEEEEEeHHHHHHHhcch----------------
Confidence 4456778887 8889999999999999999999999999999 69999999999998652210
Q ss_pred hcccccCCCCCChhhHHHHHHHhhcCCCcccccCCC----CCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEe
Q 025005 116 GVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEK----SKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGIL 190 (259)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Gii 190 (259)
.. .....++.++|... +++.++.+++++.++++.|.+.+.+.+||+| +|+++|++
T Consensus 81 ----~~----------------~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGii 140 (152)
T 2uv4_A 81 ----TY----------------NNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIV 140 (152)
T ss_dssp ----SC----------------CCTTSBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEE
T ss_pred ----hh----------------hhhcchHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCCCeEEEEE
Confidence 00 01123466777421 4688999999999999999999999999999 79999999
Q ss_pred ehHHHHHHH
Q 025005 191 TSKDILMRV 199 (259)
Q Consensus 191 t~~di~~~~ 199 (259)
|..|+++.+
T Consensus 141 t~~dil~~l 149 (152)
T 2uv4_A 141 SLSDILQAL 149 (152)
T ss_dssp EHHHHHHHH
T ss_pred EHHHHHHHH
Confidence 999998654
No 95
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.68 E-value=2.4e-16 Score=128.67 Aligned_cols=123 Identities=14% Similarity=0.221 Sum_probs=108.1
Q ss_pred hcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhC-----CccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhh
Q 025005 34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKG 107 (259)
Q Consensus 34 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~-----~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~ 107 (259)
.-..+.+.+++++|++++++++++.++.+|++.|.++ +++++||+| +|+++|+++..+++..
T Consensus 130 ~ll~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~------------ 197 (286)
T 2oux_A 130 ELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN------------ 197 (286)
T ss_dssp HHTTSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS------------
T ss_pred HHhcCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC------------
Confidence 3447788999999999999999999999999999987 788899999 6999999999998752
Q ss_pred HHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCee
Q 025005 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP 186 (259)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~ 186 (259)
....+++++|. +++.++++++++.++++.|.+++.+++||+| +|++
T Consensus 198 -------------------------------~~~~~v~~im~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~l 244 (286)
T 2oux_A 198 -------------------------------DDDTLIADILN--ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHL 244 (286)
T ss_dssp -------------------------------CTTSBHHHHSB--SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBE
T ss_pred -------------------------------CCCCcHHHHcC--CCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeE
Confidence 12345777886 6789999999999999999999999999999 8999
Q ss_pred eEEeehHHHHHHHHh
Q 025005 187 RGILTSKDILMRVIS 201 (259)
Q Consensus 187 ~Giit~~di~~~~~~ 201 (259)
+|+||..|++..+..
T Consensus 245 vGiIT~~Dil~~i~~ 259 (286)
T 2oux_A 245 LGIVTVDDIIDVIDD 259 (286)
T ss_dssp EEEEEHHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHH
Confidence 999999999965543
No 96
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.66 E-value=6.8e-16 Score=125.59 Aligned_cols=121 Identities=20% Similarity=0.222 Sum_probs=106.3
Q ss_pred CCCCcccccccccCCCeEEeCcchHHHHHHHHHhC-----CccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHH
Q 025005 36 LNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKA 109 (259)
Q Consensus 36 ~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~-----~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~ 109 (259)
..+.+.+++++|++++++++++.++.+|++.|.++ ++..+||+| +|+++|+++..+++..
T Consensus 130 l~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-------------- 195 (278)
T 2yvy_A 130 ARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------------- 195 (278)
T ss_dssp HHSCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS--------------
T ss_pred HCCCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC--------------
Confidence 35678899999999999999999999999999986 789999999 6999999999998752
Q ss_pred HHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeE
Q 025005 110 IAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRG 188 (259)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~G 188 (259)
....+++++|. +++.++++++++.++++.|.+++.+.+||+| +|+++|
T Consensus 196 -----------------------------~~~~~v~~im~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvG 244 (278)
T 2yvy_A 196 -----------------------------DPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVG 244 (278)
T ss_dssp -----------------------------CTTCBSTTTSB--SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEE
T ss_pred -----------------------------CCCCcHHHHhC--CCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEE
Confidence 12456889997 6799999999999999999999999999999 899999
Q ss_pred EeehHHHHHHHHh
Q 025005 189 ILTSKDILMRVIS 201 (259)
Q Consensus 189 iit~~di~~~~~~ 201 (259)
+||..|+++.+..
T Consensus 245 ivT~~Dil~~i~~ 257 (278)
T 2yvy_A 245 IVTVDDVLDVLEA 257 (278)
T ss_dssp EEEHHHHHHHC--
T ss_pred EEEHHHHHHHHHH
Confidence 9999999854433
No 97
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.66 E-value=4.6e-16 Score=126.58 Aligned_cols=110 Identities=19% Similarity=0.245 Sum_probs=100.0
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHc-----CCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCccccccc
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK 213 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~ 213 (259)
...+++++|. ++++++.++.++.++++.|.+. ++.++||++ +|+++|++|.+|++.. ....++++
T Consensus 133 ~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~-------~~~~~v~~ 203 (278)
T 2yvy_A 133 EEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------DPRTRVAE 203 (278)
T ss_dssp CTTBGGGTCB--SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS-------CTTCBSTT
T ss_pred CcchHHhhcC--CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC-------CCCCcHHH
Confidence 4677899998 6799999999999999999987 689999999 8999999999999731 13578999
Q ss_pred ccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 214 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+|.+++.++++++++.++++.|.+++.+.+||||++|+++|+||+
T Consensus 204 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~ 248 (278)
T 2yvy_A 204 IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTV 248 (278)
T ss_dssp TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEH
Confidence 999899999999999999999999999999999999999999996
No 98
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.66 E-value=2.3e-16 Score=128.77 Aligned_cols=110 Identities=20% Similarity=0.289 Sum_probs=99.7
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHc-----CCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCccccccc
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEK 213 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~ 213 (259)
...+++++|. +++++++++.++.++++.|.++ +++++||+| +|+++|++|.+|++.. ....++++
T Consensus 135 ~~~~v~~iM~--~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~-------~~~~~v~~ 205 (286)
T 2oux_A 135 EDETAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN-------DDDTLIAD 205 (286)
T ss_dssp CTTBHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS-------CTTSBHHH
T ss_pred ChHHHHHhCC--CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC-------CCCCcHHH
Confidence 4667889998 6799999999999999999987 788899999 8999999999999631 23578999
Q ss_pred ccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 214 VMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 214 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
+|.+++.++++++++.+|++.|.+++.+.+||||++|+++|+||+
T Consensus 206 im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~ 250 (286)
T 2oux_A 206 ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTV 250 (286)
T ss_dssp HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEH
T ss_pred HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEH
Confidence 999999999999999999999999999999999999999999996
No 99
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.65 E-value=6.3e-16 Score=123.19 Aligned_cols=117 Identities=12% Similarity=0.037 Sum_probs=96.7
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeC---CeeeEEeehHHHHHHHHhc----CCC--C----
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE---NKPRGILTSKDILMRVISQ----NLP--A---- 206 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---g~~~Giit~~di~~~~~~~----~~~--~---- 206 (259)
...+++++|. ++++++.+++++.++.++|.+++++.+||+++ |+++|+||+.|+++.+... ... +
T Consensus 11 ~~~~v~diMt--~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~ 88 (250)
T 2d4z_A 11 YNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA 88 (250)
T ss_dssp SSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred CCCChHHhcC--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence 4567899998 78999999999999999999999999999992 6899999999998544321 000 0
Q ss_pred --------------------------------------------------------------------------------
Q 025005 207 -------------------------------------------------------------------------------- 206 (259)
Q Consensus 207 -------------------------------------------------------------------------------- 206 (259)
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (250)
T 2d4z_A 89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE 168 (250)
T ss_dssp CCC---------------------------------------------------------------------------CC
T ss_pred cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence
Q ss_pred ---------------ccccc--c-cccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 207 ---------------DSTLV--E-KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 207 ---------------~~~~v--~-~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
...++ . .+|.+.|+++.++++|.++..+|.+.|++++||++ .|+|+|||||+
T Consensus 169 ~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrk 238 (250)
T 2d4z_A 169 EMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALA 238 (250)
T ss_dssp SCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHH
T ss_pred cccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHH
Confidence 01122 2 36788899999999999999999999999999998 79999999984
No 100
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.60 E-value=7.3e-16 Score=138.59 Aligned_cols=119 Identities=8% Similarity=-0.079 Sum_probs=98.4
Q ss_pred cCCCcccccCCCCCeeEeCCCchHHHHHHHHH-HcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCC------------
Q 025005 140 FRPSLSTIIPEKSKVVTISPTDTVLMATKKML-ELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLP------------ 205 (259)
Q Consensus 140 ~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~-~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~------------ 205 (259)
...+++++|.+.+++.++++++++.++.+.|. +++++.+||+| +|+++|++|.+|+++.+.....+
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~ 530 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV 530 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence 34567899986578999999999999999999 79999999999 89999999999997433221000
Q ss_pred ----------------------------------CcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCc
Q 025005 206 ----------------------------------ADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDM 251 (259)
Q Consensus 206 ----------------------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~ 251 (259)
....+++++|++++.++++++++.++.+.|.+++.+++||+ ++|+
T Consensus 531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~ 609 (632)
T 3org_A 531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGK 609 (632)
T ss_dssp ----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTE
T ss_pred ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCE
Confidence 00013788999999999999999999999999999999999 6899
Q ss_pred eeeEEecC
Q 025005 252 PITCYSKK 259 (259)
Q Consensus 252 ~~Gvitr~ 259 (259)
++|+||++
T Consensus 610 lvGIVT~~ 617 (632)
T 3org_A 610 LVGIVERE 617 (632)
T ss_dssp EEEEEEGG
T ss_pred EEEEEehh
Confidence 99999984
No 101
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.59 E-value=8.8e-15 Score=127.20 Aligned_cols=123 Identities=20% Similarity=0.210 Sum_probs=108.5
Q ss_pred hcCCCCcccccccccCCCeEEeCcchHHHHHHHHHhC-----CccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhh
Q 025005 34 RELNLEETPVSKVMTRNPTFVLSDTLAVEALQKMVQG-----KFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKG 107 (259)
Q Consensus 34 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~-----~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~ 107 (259)
+-..+.+.+++++|++++++++++.++.+|++.|.++ ++.++||+| +++++|+++..|++..
T Consensus 148 ~~l~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~------------ 215 (473)
T 2zy9_A 148 ALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA------------ 215 (473)
T ss_dssp HHHTSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS------------
T ss_pred HHhcCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC------------
Confidence 3447788999999999999999999999999999985 579999999 6899999999998752
Q ss_pred HHHHHHhhhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCee
Q 025005 108 KAIAAAVEGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKP 186 (259)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~ 186 (259)
....+++++|. +++.++++++++.++++.|.+++.+.+||+| +|++
T Consensus 216 -------------------------------~~~~~v~dim~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~l 262 (473)
T 2zy9_A 216 -------------------------------DPRTRVAEIMN--PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRL 262 (473)
T ss_dssp -------------------------------CTTSBGGGTSB--SSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBE
T ss_pred -------------------------------CCCCcHHHHhC--CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEE
Confidence 12456889997 6799999999999999999999999999999 8999
Q ss_pred eEEeehHHHHHHHHh
Q 025005 187 RGILTSKDILMRVIS 201 (259)
Q Consensus 187 ~Giit~~di~~~~~~ 201 (259)
+|++|..|+++.+..
T Consensus 263 vGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 263 VGIVTVDDVLDVLEA 277 (473)
T ss_dssp EEEEEHHHHHHHHHH
T ss_pred EEEEehHhhHHHHHH
Confidence 999999999965543
No 102
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.58 E-value=7.6e-15 Score=129.54 Aligned_cols=124 Identities=12% Similarity=0.201 Sum_probs=105.9
Q ss_pred CCcccccccccCCCeEEeCc-chHHHHHHHHHhCCccEeeEee--CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 025005 38 LEETPVSKVMTRNPTFVLSD-TLAVEALQKMVQGKFRHLPVVE--NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAV 114 (259)
Q Consensus 38 ~~~~~v~~~~~~~~~~v~~~-~~l~~a~~~~~~~~~~~~pV~d--~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (259)
+.+.+|+++|+++++++.++ +++.+|+++|.+++++++||+| +++++|+|+..|+++.+...
T Consensus 381 l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~--------------- 445 (527)
T 3pc3_A 381 WWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSM--------------- 445 (527)
T ss_dssp TTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHH---------------
T ss_pred ccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhc---------------
Confidence 44689999999999999999 9999999999999999999999 68999999999999764321
Q ss_pred hhcccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeC-----CeeeEE
Q 025005 115 EGVEKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE-----NKPRGI 189 (259)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----g~~~Gi 189 (259)
......+++++|. +++.++++++++.+++++|.+.++ +||+|+ |+++|+
T Consensus 446 ----------------------~~~~~~~V~~im~--~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGI 499 (527)
T 3pc3_A 446 ----------------------NRQQSDPAIKALN--KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKAL 499 (527)
T ss_dssp ----------------------CCCTTSBGGGGEE--TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEE
T ss_pred ----------------------cCcCCCcHHHHhc--CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEE
Confidence 0123556899997 779999999999999999977654 699984 999999
Q ss_pred eehHHHHHHHHhc
Q 025005 190 LTSKDILMRVISQ 202 (259)
Q Consensus 190 it~~di~~~~~~~ 202 (259)
||..|+++.+...
T Consensus 500 VT~~Dll~~l~~~ 512 (527)
T 3pc3_A 500 ATKLDVTTFIAAG 512 (527)
T ss_dssp EEHHHHHHHHHTC
T ss_pred EEHHHHHHHHHhc
Confidence 9999999666544
No 103
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.58 E-value=6.9e-15 Score=127.88 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=100.5
Q ss_pred hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHc-----CCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccc
Q 025005 139 MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLEL-----RLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVE 212 (259)
Q Consensus 139 ~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~-----~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~ 212 (259)
+...+++++|. +++++++++.++.++++.|.+. ++..+||+| +++++|++|.+|++.. ....+++
T Consensus 152 ~~~~~v~~iM~--~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~-------~~~~~v~ 222 (473)
T 2zy9_A 152 YEEDEAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA-------DPRTRVA 222 (473)
T ss_dssp SCTTBSTTTCB--SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS-------CTTSBGG
T ss_pred CCCCCHHHhCC--CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC-------CCCCcHH
Confidence 35677899998 6899999999999999999986 478999999 8999999999999731 1357899
Q ss_pred cccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 213 KVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 213 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++|.+++.++++++++.++++.|.+++.+.+||||++|+++|+||++
T Consensus 223 dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~ 269 (473)
T 2zy9_A 223 EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVD 269 (473)
T ss_dssp GTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred HHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehH
Confidence 99998999999999999999999999999999999999999999963
No 104
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.57 E-value=5.4e-15 Score=130.50 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=100.4
Q ss_pred CCCcccccCCCCCeeEeCCC-chHHHHHHHHHHcCCceEEEee--CCeeeEEeehHHHHHHHHhcCCCCcccccccccCC
Q 025005 141 RPSLSTIIPEKSKVVTISPT-DTVLMATKKMLELRLSSAVVTV--ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP 217 (259)
Q Consensus 141 ~~~v~~~~~~~~~~~~v~~~-~~l~~~~~~~~~~~~~~~~V~~--~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~ 217 (259)
..+++++|. ++++++.++ +++.+++++|.+++++++||+| +|+++|+||.+|+++.+..... ....+++++|.+
T Consensus 383 ~~~V~diM~--~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~-~~~~~V~~im~~ 459 (527)
T 3pc3_A 383 SLAIAELEL--PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNR-QQSDPAIKALNK 459 (527)
T ss_dssp TSBGGGGCC--CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCC-CTTSBGGGGEET
T ss_pred CCcHHHhCc--CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccC-cCCCcHHHHhcC
Confidence 567899998 679999999 9999999999999999999999 7999999999999876665433 345799999999
Q ss_pred CCceecCCCCHHHHHHHHHhCCCceeeeecCC----CceeeEEec
Q 025005 218 NPECATIDTPIVDALHIMHDGKFLHLPVVDRG----DMPITCYSK 258 (259)
Q Consensus 218 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~----~~~~Gvitr 258 (259)
++.++++++++.+++++|.++++ +||||++ |+++|+||+
T Consensus 460 ~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~ 502 (527)
T 3pc3_A 460 RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATK 502 (527)
T ss_dssp TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEH
T ss_pred CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEH
Confidence 99999999999999999987775 7999974 999999997
No 105
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.53 E-value=1.3e-14 Score=130.57 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=102.6
Q ss_pred Cccccccccc--CCCeEEeCcchHHHHHHHHH-hCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHH--
Q 025005 39 EETPVSKVMT--RNPTFVLSDTLAVEALQKMV-QGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAA-- 112 (259)
Q Consensus 39 ~~~~v~~~~~--~~~~~v~~~~~l~~a~~~~~-~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~-- 112 (259)
.+.+++|+|+ ++++++++++++.++.+.|. +++++++||+| +++++|+++..|+.+.+........+.......
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~ 530 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV 530 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence 5789999999 89999999999999999999 79999999999 699999999999987643211000000000000
Q ss_pred --HhhhcccccCCCCCC-hh----hHHHHHHHh-hcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCC
Q 025005 113 --AVEGVEKHWGTSISG-PN----TFIETLRER-MFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVEN 184 (259)
Q Consensus 113 --~~~~~~~~~~~~~~~-~~----~~~~~~~~~-~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g 184 (259)
......+........ +. ...+..... ....+++++|+ +++.++++++++.++++.|.+++.+.+||+++|
T Consensus 531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt--~~pitV~~~~~l~ea~~~M~~~~i~~lpVve~G 608 (632)
T 3org_A 531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCD--VSPIVVTSYSLVRQLHFLFVMLMPSMIYVTERG 608 (632)
T ss_dssp ----------------------------------------CCSCC--CCCCEEETTCBHHHHHHHHHHTCCSEEEEEETT
T ss_pred ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhc--CCCceecCCCcHHHHHHHHHhcCCCEEEEEECC
Confidence 000000000000000 00 000000000 11224788998 778999999999999999999999999999999
Q ss_pred eeeEEeehHHHH
Q 025005 185 KPRGILTSKDIL 196 (259)
Q Consensus 185 ~~~Giit~~di~ 196 (259)
+++|++|.+|++
T Consensus 609 ~lvGIVT~~Dll 620 (632)
T 3org_A 609 KLVGIVEREDVA 620 (632)
T ss_dssp EEEEEEEGGGTE
T ss_pred EEEEEEehhhHH
Confidence 999999999997
No 106
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.52 E-value=6e-14 Score=122.73 Aligned_cols=159 Identities=11% Similarity=0.148 Sum_probs=124.0
Q ss_pred ccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee---CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 025005 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 119 (259)
Q Consensus 43 v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d---~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (259)
.++.|..+++++++++++.+++++|.+++++++||+| +++++|+++..|+...
T Consensus 115 ~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~------------------------ 170 (511)
T 3usb_A 115 SESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI------------------------ 170 (511)
T ss_dssp SSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC------------------------
T ss_pred cccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh------------------------
Confidence 4567788999999999999999999999999999998 5799999999998531
Q ss_pred ccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHH
Q 025005 120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR 198 (259)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~ 198 (259)
.....+++++|++ .++++++++.++.+++++|.+++.+.+||+| +|+++|++|..|+++.
T Consensus 171 ------------------~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~ 231 (511)
T 3usb_A 171 ------------------QDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKV 231 (511)
T ss_dssp ------------------CCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred ------------------ccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHh
Confidence 0234567888873 3899999999999999999999999999999 9999999999999855
Q ss_pred HHhcCCCCcccccccccCCCC--ceecCCCCHHHHHHHHHhCCCceeeeecCCC
Q 025005 199 VISQNLPADSTLVEKVMTPNP--ECATIDTPIVDALHIMHDGKFLHLPVVDRGD 250 (259)
Q Consensus 199 ~~~~~~~~~~~~v~~~~~~~~--~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~ 250 (259)
+.. . ....+.+.+.. ..+.......+.++.+.+.+.+.+.|-..++
T Consensus 232 ~~~-p-----~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g 279 (511)
T 3usb_A 232 IEF-P-----NSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDTAHG 279 (511)
T ss_dssp HHC-T-----TCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred hhc-c-----cchhhhccceeeeeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence 432 1 12223333222 2333344456667788888998887765555
No 107
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.51 E-value=6.4e-14 Score=122.55 Aligned_cols=107 Identities=25% Similarity=0.283 Sum_probs=96.3
Q ss_pred cccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee---CCeeeEEeehHHHHHHHHhcCCCCcccccccccCC-CC
Q 025005 144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NP 219 (259)
Q Consensus 144 v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~-~~ 219 (259)
.++.|. .++++++++.++.++.++|.+++++.+||++ +|+++|++|.+|+.. ......+++++|.+ ++
T Consensus 115 ~~~~m~--~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~------~~~~~~~V~~vM~~~~~ 186 (511)
T 3usb_A 115 SESGVI--SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF------IQDYSIKISDVMTKEQL 186 (511)
T ss_dssp SSSCSS--SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT------CCCSSSBHHHHCCCCCC
T ss_pred cccccc--cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh------hccCCCcHHHhcccCCC
Confidence 445665 6789999999999999999999999999999 579999999999952 22346889999998 89
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.++++++++.+++++|.+++.+.+||||++|+++|+||+
T Consensus 187 vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~ 225 (511)
T 3usb_A 187 ITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITI 225 (511)
T ss_dssp CCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccH
Confidence 999999999999999999999999999999999999996
No 108
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.50 E-value=1.6e-14 Score=125.90 Aligned_cols=108 Identities=18% Similarity=0.149 Sum_probs=88.5
Q ss_pred cccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccC-C-CCc
Q 025005 144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P-NPE 220 (259)
Q Consensus 144 v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~-~-~~~ 220 (259)
.+++|. .+++++++++++.++.++|.+++++.+||++ +|+++|+||.+|+. .......+++++|. + ++.
T Consensus 91 ~~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~------~~~~~~~~v~diM~p~~~~v 162 (496)
T 4fxs_A 91 FEAGVV--THPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVR------FVTDLTKSVAAVMTPKERLA 162 (496)
T ss_dssp CCC--C--BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHT------TCCCTTSBGGGTSEEGGGCC
T ss_pred cccccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHh------hcccCCCcHHHHhcCCCCCE
Confidence 466776 6799999999999999999999999999999 89999999999984 12234578999999 4 589
Q ss_pred eecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 221 CATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++++++++.+++++|.+++.+.+||||++|+++|+||++
T Consensus 163 tv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~ 201 (496)
T 4fxs_A 163 TVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAK 201 (496)
T ss_dssp EEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHh
Confidence 999999999999999999999999999999999999974
No 109
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.49 E-value=1.3e-13 Score=87.68 Aligned_cols=69 Identities=30% Similarity=0.415 Sum_probs=63.5
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCcee
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA 222 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v 222 (259)
++++++++++.+++++|.+++++++||+++|+++|++|.+|++++++..+.+....+++++|++++.++
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV 70 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI 70 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence 689999999999999999999999999999999999999999888888877777789999999988764
No 110
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.49 E-value=3e-13 Score=107.85 Aligned_cols=168 Identities=17% Similarity=0.192 Sum_probs=106.3
Q ss_pred CCCCCcCEEEEEcCCCeEEEEEehhHHHHHHHHhcCC---------------------------------------CCcc
Q 025005 1 MAARRVDALLLTDSNALLCGILTDKDIATRVIARELN---------------------------------------LEET 41 (259)
Q Consensus 1 m~~~~~~~~~v~~~~~~~~g~~t~~di~~~~~~~~~~---------------------------------------~~~~ 41 (259)
|.+++++.+||+|++|+++|++|..|+++.+...... ....
T Consensus 33 m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~ 112 (245)
T 3l2b_A 33 MRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAE 112 (245)
T ss_dssp HHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGG
T ss_pred HHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChH
Confidence 5678999999999889999999999998766432100 0001
Q ss_pred cccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhccccc
Q 025005 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHW 121 (259)
Q Consensus 42 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (259)
.+.+.+....+.+-.+ -.++...+.+.+...+++..+..+ ..++... ... ..
T Consensus 113 ~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~-----~~~v~~~-a~~--------------------~~ 164 (245)
T 3l2b_A 113 SLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTP-----SKEIIEL-AKK--------------------NN 164 (245)
T ss_dssp GGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCC-----CHHHHHH-HHH--------------------HT
T ss_pred HHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCC-----CHHHHHH-HHH--------------------cC
Confidence 1122222333333332 366777777888887777653221 1111111 000 00
Q ss_pred CCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHH
Q 025005 122 GTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (259)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~ 197 (259)
...+..+.+............+++++|++ +++.++++++++.+++++|.+++++.+||+| +|+++|++|.+|+++
T Consensus 165 ~~~i~t~~d~~~~~~~~~~~~~v~~im~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~ 240 (245)
T 3l2b_A 165 ITVITTPHDSFTASRLIVQSLPVDYVMTK-DNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIS 240 (245)
T ss_dssp CEEEECSSCHHHHHHHGGGGSBHHHHSBC-TTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC----
T ss_pred CeEEEeCCChHHHHHHHhcCCceeeEecC-CccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhc
Confidence 01111223333444445566779999975 6799999999999999999999999999999 899999999999974
No 111
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.45 E-value=2.4e-15 Score=128.68 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCeeEeCCCchHHHHHHHHHHcCCceEEEee----CCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecCCCC
Q 025005 152 SKVVTISPTDTVLMATKKMLELRLSSAVVTV----ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATIDTP 227 (259)
Q Consensus 152 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~ 227 (259)
.+++++.++.++.++.++|.+++++.+||++ +|+++|++|.+|+. . . ....+++++|.+++++++++.+
T Consensus 146 ~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r-f-----~-d~~~~V~evMT~~lvt~~~~~~ 218 (556)
T 4af0_A 146 TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ-F-----Q-DAETPIKSVMTTEVVTGSSPIT 218 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc-c-----c-ccceEhhhhcccceEEecCCCC
Confidence 5699999999999999999999999999998 46899999999983 2 1 2357899999999999999999
Q ss_pred HHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 228 IVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 228 l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+.+|.++|.++++..|||||++|+++|+||++
T Consensus 219 leeA~~iL~~~kieklpVVd~~g~LvGlIT~k 250 (556)
T 4af0_A 219 LEKANSLLRETKKGKLPIVDSNGHLVSLVARS 250 (556)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHccccceeEEccCCcEEEEEEec
Confidence 99999999999999999999999999999974
No 112
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.44 E-value=2.3e-14 Score=125.40 Aligned_cols=163 Identities=14% Similarity=0.113 Sum_probs=23.4
Q ss_pred cccc-ccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhc
Q 025005 43 VSKV-MTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (259)
Q Consensus 43 v~~~-~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~----~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (259)
..+. |.++++++++++++.+++++|.+++++++||+|+ ++++|+|+..|+... .
T Consensus 98 ~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~------------------- 156 (503)
T 1me8_A 98 NFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L------------------- 156 (503)
T ss_dssp TTTC----------------------------------------------------------------------------
T ss_pred hcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h-------------------
Confidence 3445 8899999999999999999999999999999984 799999999998742 0
Q ss_pred ccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
.....+++++|.+..++.++++++++.+++++|.+++.+.+||+| +|+++|+||.+|++
T Consensus 157 --------------------~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil 216 (503)
T 1me8_A 157 --------------------TQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYD 216 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------ccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHH
Confidence 012345888897333499999999999999999999999999999 89999999999998
Q ss_pred HHHHhcCCCCcccccccccCCCCceecCCCCHHHHHHHHHhCCCceeeeecCCCc
Q 025005 197 MRVISQNLPADSTLVEKVMTPNPECATIDTPIVDALHIMHDGKFLHLPVVDRGDM 251 (259)
Q Consensus 197 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~ 251 (259)
+.+..... . ..+.+.++. ...+.. ....+..+.|.+.+.+.++|-..+|.
T Consensus 217 ~~~~~~~~-~-~d~~~~l~v--~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~ 266 (503)
T 1me8_A 217 RSQVCHNE-L-VDSQKRYLV--GAGINT-RDFRERVPALVEAGADVLCIDSSDGF 266 (503)
T ss_dssp -----CCC-C-BCTTSCBCC--EEEECS-SSHHHHHHHHHHHTCSEEEECCSCCC
T ss_pred Hhhhcccc-h-hcccccccc--ccccCc-hhHHHHHHHHHhhhccceEEecccCc
Confidence 65543221 1 111112221 123344 55667788888888887655223343
No 113
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.44 E-value=1e-14 Score=127.04 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=1.9
Q ss_pred cccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccC-C-CCce
Q 025005 144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMT-P-NPEC 221 (259)
Q Consensus 144 v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~-~-~~~~ 221 (259)
++++|. .++++++++.++.+++++|.+++++.+||+++|+++|++|.+|+. .. .....+++++|. + ++.+
T Consensus 90 ~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~-~~-----~~~~~~V~~vMtp~~~~vt 161 (490)
T 4avf_A 90 HETAIV--RDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLR-VK-----PNAGDTVAAIMTPKDKLVT 161 (490)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred cccCcc--cCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhh-hc-----cccCCcHHHHhccCCCCEE
Confidence 566776 678899999999999999999999999999999999999999984 21 123578999999 4 6899
Q ss_pred ecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 222 ATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++++++.+++++|.+++.+.+||||++|+++|+||++
T Consensus 162 v~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~ 199 (490)
T 4avf_A 162 AREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFR 199 (490)
T ss_dssp --------------------------------------
T ss_pred ECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehH
Confidence 99999999999999999999999999999999999974
No 114
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.43 E-value=8.5e-13 Score=115.61 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=96.3
Q ss_pred cccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee---CCeeeEEeehHHHHHHHHhcCCCCcccccccccCC-CC
Q 025005 144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV---ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP-NP 219 (259)
Q Consensus 144 v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~-~~ 219 (259)
+.++|. +++.++.++.++.++++.|.+.+++.+||++ +++++|++|.+|++. . .....+++++|.+ ++
T Consensus 92 ~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~-~-----~~~~~~v~~im~~~~~ 163 (491)
T 1zfj_A 92 SENGVI--IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF-I-----SDYNAPISEHMTSEHL 163 (491)
T ss_dssp HTTTTS--SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH-C-----SCSSSBTTTSCCCSCC
T ss_pred HHhcCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh-h-----ccCCCcHHHHcCCCCC
Confidence 356787 6789999999999999999999999999997 789999999999963 2 1235789999998 88
Q ss_pred ceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEec
Q 025005 220 ECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 220 ~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.++++++++.++++.|.+++.+.+||||++|+++|+||+
T Consensus 164 ~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~ 202 (491)
T 1zfj_A 164 VTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITI 202 (491)
T ss_dssp CCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEH
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEH
Confidence 999999999999999999999999999999999999996
No 115
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.42 E-value=1.1e-14 Score=127.45 Aligned_cols=105 Identities=22% Similarity=0.209 Sum_probs=0.0
Q ss_pred cCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-C---CeeeEEeehHHHHHHHHhcCCCCcccccccccCCC--Cce
Q 025005 148 IPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-E---NKPRGILTSKDILMRVISQNLPADSTLVEKVMTPN--PEC 221 (259)
Q Consensus 148 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~---g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~--~~~ 221 (259)
|. ++++++++++++.+++++|.+++++.+||+| + |+++|+||.+|+++ . ......+++++|.++ +.+
T Consensus 103 M~--~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~-~----~~~~~~~V~diM~~~~~~~t 175 (503)
T 1me8_A 103 FV--VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPI-D----LTQTETKVSDMMTPFSKLVT 175 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc--cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHh-h----hccccCcHHHHhCCCCCCEE
Confidence 76 6799999999999999999999999999999 5 89999999999963 2 123457899999987 999
Q ss_pred ecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 222 ATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 222 v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
+++++++.+|+++|.+++.+.+||||++|+++|+||++
T Consensus 176 v~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~ 213 (503)
T 1me8_A 176 AHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRK 213 (503)
T ss_dssp --------------------------------------
T ss_pred EcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEec
Confidence 99999999999999999999999999999999999974
No 116
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.41 E-value=3.4e-13 Score=117.53 Aligned_cols=115 Identities=18% Similarity=0.275 Sum_probs=88.8
Q ss_pred ccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 025005 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 119 (259)
Q Consensus 41 ~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (259)
.+++++|..+++++++++++.+++++|.+++++++||+| +++++|+|+..|+...
T Consensus 89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~------------------------ 144 (496)
T 4fxs_A 89 KIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV------------------------ 144 (496)
T ss_dssp HHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC------------------------
T ss_pred cccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc------------------------
Confidence 355788999999999999999999999999999999999 6999999999998621
Q ss_pred ccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHH
Q 025005 120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (259)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~ 197 (259)
.....+++++|++..++++++++.++.+++++|.+++.+.+||+| +|+++|+||..|+++
T Consensus 145 ------------------~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~ 205 (496)
T 4fxs_A 145 ------------------TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHK 205 (496)
T ss_dssp ------------------CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC----
T ss_pred ------------------ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHH
Confidence 012456888996213689999999999999999999999999999 999999999999974
No 117
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.40 E-value=2.4e-14 Score=125.49 Aligned_cols=108 Identities=25% Similarity=0.313 Sum_probs=0.5
Q ss_pred cccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHhcCCCCcccccccccCC--CCc
Q 025005 144 LSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVISQNLPADSTLVEKVMTP--NPE 220 (259)
Q Consensus 144 v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~--~~~ 220 (259)
++++|. +++.++.++.++.+++++|.+++++.+||+| +|+++|+||.+|+.+ . .....+++++|.+ ++.
T Consensus 97 ~~~iM~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~-~-----~~~~~~v~~im~~~~~~~ 168 (494)
T 1vrd_A 97 TENGII--YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRF-E-----KNLSKKIKDLMTPREKLI 168 (494)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HhhcCc--cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHh-h-----cCCCCcHHHHhCCCCCCe
Confidence 567787 6799999999999999999999999999999 889999999999963 2 1235789999998 899
Q ss_pred eecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 221 CATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 221 ~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++++++++.+++++|.+++.+.+||||++|+++|+||++
T Consensus 169 ~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~ 207 (494)
T 1vrd_A 169 VAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIK 207 (494)
T ss_dssp ---------------------------------------
T ss_pred EECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHH
Confidence 999999999999999999999999999999999999974
No 118
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.38 E-value=1.3e-11 Score=108.06 Aligned_cols=116 Identities=17% Similarity=0.249 Sum_probs=101.7
Q ss_pred cccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee---CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 025005 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE---NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVE 118 (259)
Q Consensus 42 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d---~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (259)
.+.++|.++++++++++++.++++.|.+++++++||+| +++++|+++..|++..
T Consensus 91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~----------------------- 147 (491)
T 1zfj_A 91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI----------------------- 147 (491)
T ss_dssp HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----------------------
T ss_pred hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-----------------------
Confidence 35789999999999999999999999999999999998 5899999999998742
Q ss_pred cccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHH
Q 025005 119 KHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (259)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~ 197 (259)
.....+++++|.+ .++.++++++++.++++.|.+++.+.+||+| +|+++|++|..|+++
T Consensus 148 -------------------~~~~~~v~~im~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~ 207 (491)
T 1zfj_A 148 -------------------SDYNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEK 207 (491)
T ss_dssp -------------------SCSSSBTTTSCCC-SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred -------------------ccCCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHH
Confidence 0124568899972 2789999999999999999999999999999 999999999999985
Q ss_pred HHH
Q 025005 198 RVI 200 (259)
Q Consensus 198 ~~~ 200 (259)
.+.
T Consensus 208 ~~~ 210 (491)
T 1zfj_A 208 VIE 210 (491)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 119
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.37 E-value=3e-13 Score=117.85 Aligned_cols=116 Identities=24% Similarity=0.295 Sum_probs=3.3
Q ss_pred ccccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccc
Q 025005 41 TPVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120 (259)
Q Consensus 41 ~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (259)
.+++++|..++++++++.++.+++++|.+++++.+||+|+++++|+++..|+....
T Consensus 88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~------------------------ 143 (490)
T 4avf_A 88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKP------------------------ 143 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhcc------------------------
Confidence 35788899999999999999999999999999999999999999999999985320
Q ss_pred cCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHH
Q 025005 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMR 198 (259)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~ 198 (259)
....+++++|++..++.+++++.++.+++++|.+++.+.+||+| +|+++|+||..|+++.
T Consensus 144 ------------------~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~ 204 (490)
T 4avf_A 144 ------------------NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKA 204 (490)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ------------------ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhh
Confidence 12345888887313699999999999999999999999999999 9999999999999843
No 120
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.34 E-value=8.4e-14 Score=122.48 Aligned_cols=111 Identities=25% Similarity=0.313 Sum_probs=64.7
Q ss_pred CcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeC----CeeeEEeehHHHHHHHHhcCCCCcccccccccCC-
Q 025005 143 SLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVE----NKPRGILTSKDILMRVISQNLPADSTLVEKVMTP- 217 (259)
Q Consensus 143 ~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~- 217 (259)
++.++|. ++++++.++.++.+++++|.+++++.+||+|+ |+++|++|.+|+.+ ... .....+++++|.+
T Consensus 109 ~~~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~-~~~---~~~~~~v~~vm~~~ 182 (514)
T 1jcn_A 109 NFEQGFI--TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDF-LAE---KDHTTLLSEVMTPR 182 (514)
T ss_dssp TCCTTSC--SSCCCCCC-----------------CEESCC--------CCEECTTTTC--------------------CC
T ss_pred hhhhccc--cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHh-hhh---ccCCCCHHHHhCCC
Confidence 4678887 67889999999999999999999999999994 89999999999853 211 1235789999998
Q ss_pred -CCceecCCCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 218 -NPECATIDTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 218 -~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++.++++++++.+++++|.+++.+.+||||++|+++|+||++
T Consensus 183 ~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~ 225 (514)
T 1jcn_A 183 IELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIART 225 (514)
T ss_dssp BCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CC
T ss_pred CCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHH
Confidence 899999999999999999999999999999999999999974
No 121
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.33 E-value=6.2e-13 Score=116.49 Aligned_cols=156 Identities=16% Similarity=0.238 Sum_probs=21.2
Q ss_pred cccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEee-CCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccc
Q 025005 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVE-NGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKH 120 (259)
Q Consensus 42 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d-~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (259)
++.++|.++++++++++++.+|+++|.+++++.+||+| +++++|+|+..|+... .
T Consensus 96 ~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~--~---------------------- 151 (494)
T 1vrd_A 96 KTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFE--K---------------------- 151 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhh--c----------------------
Confidence 46788999999999999999999999999999999999 6899999999998742 0
Q ss_pred cCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHH
Q 025005 121 WGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRV 199 (259)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~ 199 (259)
....++.++|.+..++.++++++++.+++++|.+++.+.+||+| +|+++|++|..|+++.+
T Consensus 152 ------------------~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~ 213 (494)
T 1vrd_A 152 ------------------NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVI 213 (494)
T ss_dssp ---------------------------------------------------------------------------CHHHH
T ss_pred ------------------CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhh
Confidence 01245788887212799999999999999999999999999999 99999999999998554
Q ss_pred HhcCCCCcccccccccCCCC--ceecCCCCHHHHHHHHHhCCCceeee
Q 025005 200 ISQNLPADSTLVEKVMTPNP--ECATIDTPIVDALHIMHDGKFLHLPV 245 (259)
Q Consensus 200 ~~~~~~~~~~~v~~~~~~~~--~~v~~~~~l~~a~~~~~~~~~~~l~V 245 (259)
... .. .++...+-. ..+.......+..+.+.+.++..+.+
T Consensus 214 ~~~-~~-----~~D~~~~l~vga~ig~~~~~~~~a~~l~~aGvd~v~i 255 (494)
T 1vrd_A 214 EHP-NA-----ARDEKGRLLVGAAVGTSPETMERVEKLVKAGVDVIVI 255 (494)
T ss_dssp TCT-TC-----CBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEE
T ss_pred ccc-cc-----cccchhhhccccccCcCHhHHHHHHHHHHhCCCEEEE
Confidence 322 10 011000000 01223345566777777777776654
No 122
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.28 E-value=3.8e-13 Score=117.44 Aligned_cols=105 Identities=29% Similarity=0.359 Sum_probs=0.5
Q ss_pred ccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCceecC
Q 025005 145 STIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECATI 224 (259)
Q Consensus 145 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v~~ 224 (259)
.+.|. .++++++++.++.++.+.|.+.+++.+||+++++++|+++.+|++. ....+++++|.+++.++++
T Consensus 96 ~~~m~--~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~--------~~~~~v~~im~~~~~~v~~ 165 (486)
T 2cu0_A 96 ERLIV--EDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAA--------REGKLVKELMTKEVITVPE 165 (486)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhcc--------CCCCCHHHHccCCCeEECC
Confidence 45665 6799999999999999999999999999999899999999999963 1347899999988999999
Q ss_pred CCCHHHHHHHHHhCCCceeeeecCCCceeeEEecC
Q 025005 225 DTPIVDALHIMHDGKFLHLPVVDRGDMPITCYSKK 259 (259)
Q Consensus 225 ~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Gvitr~ 259 (259)
++++.+++++|.+++.+.+||||++|+++|+||++
T Consensus 166 ~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~ 200 (486)
T 2cu0_A 166 SIEVEEALKIMIENRIDRLPVVDERGKLVGLITMS 200 (486)
T ss_dssp -----------------------------------
T ss_pred cCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHH
Confidence 99999999999999999999999999999999974
No 123
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.27 E-value=1.8e-12 Score=111.05 Aligned_cols=109 Identities=14% Similarity=0.197 Sum_probs=0.8
Q ss_pred cccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 025005 44 SKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEK 119 (259)
Q Consensus 44 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~----~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (259)
+..|..+++++.|+.++.+|+++|.+++++.+||+++ ++++|+++..|+-..
T Consensus 141 e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~------------------------ 196 (556)
T 4af0_A 141 ENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ------------------------ 196 (556)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc------------------------
Confidence 3456778999999999999999999999999999984 689999999997432
Q ss_pred ccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHH
Q 025005 120 HWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILM 197 (259)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~ 197 (259)
....+++++|+ +++++++++.++.++.++|.+++...+||+| +|+++|+||.+|+.+
T Consensus 197 -------------------d~~~~V~evMT--~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k 254 (556)
T 4af0_A 197 -------------------DAETPIKSVMT--TEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLK 254 (556)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred -------------------ccceEhhhhcc--cceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhh
Confidence 12346889998 6799999999999999999999999999999 999999999999973
No 124
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.25 E-value=8.9e-13 Score=115.11 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=20.9
Q ss_pred ccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccccC
Q 025005 43 VSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKHWG 122 (259)
Q Consensus 43 v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (259)
..+.|..++++++++.++.+++++|.+++++++||+|+++++|+++..|+.. .
T Consensus 95 ~~~~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~~~lvGivt~~Dl~~---~------------------------ 147 (486)
T 2cu0_A 95 AERLIVEDVITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAA---R------------------------ 147 (486)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred hhhccccCceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHhcc---C------------------------
Confidence 3567889999999999999999999999999999999899999999999863 0
Q ss_pred CCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHHHHHHh
Q 025005 123 TSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDILMRVIS 201 (259)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~~~~~~ 201 (259)
...+++++|. +++.++++++++.++++.|.+++.+.+||+| +|+++|++|..|+++. ..
T Consensus 148 -----------------~~~~v~~im~--~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~-~~ 207 (486)
T 2cu0_A 148 -----------------EGKLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVAR-KK 207 (486)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -----------------CCCCHHHHcc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHh-hh
Confidence 0124777786 5788999999999999999999999999999 8999999999999843 32
Q ss_pred cCCCCcccccccccCCC--CceecCCCCHHHHHHHHHhCCCceeeeec-CCCceee
Q 025005 202 QNLPADSTLVEKVMTPN--PECATIDTPIVDALHIMHDGKFLHLPVVD-RGDMPIT 254 (259)
Q Consensus 202 ~~~~~~~~~v~~~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~G 254 (259)
... ..++.+..- ...+...+ .+....+.+.+.+.+ |++ .+|...+
T Consensus 208 ~~~-----~~~~~~g~~~v~~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~ 255 (486)
T 2cu0_A 208 YKN-----AVRDENGELLVAAAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLK 255 (486)
T ss_dssp CTT-----CCBCTTSCBCCEEEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHH
T ss_pred ccc-----cccccCCceeecceechhh--HHHHHHHHHhcCCce-EEEecCCcEee
Confidence 211 111111110 01233333 555677888888876 455 4555433
No 125
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.21 E-value=1e-12 Score=115.62 Aligned_cols=116 Identities=11% Similarity=0.183 Sum_probs=68.1
Q ss_pred cccccccCCCeEEeCcchHHHHHHHHHhCCccEeeEeeC----CeEEEEEeHHHHHHHHHHHHHHHhhhhHHHHHHhhhc
Q 025005 42 PVSKVMTRNPTFVLSDTLAVEALQKMVQGKFRHLPVVEN----GEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGV 117 (259)
Q Consensus 42 ~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~----~~~vGvi~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (259)
+++++|.++++++.+++++.+|+++|.+++++.+||+|+ ++++|+|+..|+.... .
T Consensus 109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~-~------------------- 168 (514)
T 1jcn_A 109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLA-E------------------- 168 (514)
T ss_dssp TCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC------------------------
T ss_pred hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhh-h-------------------
Confidence 678999999999999999999999999999999999985 7999999999986420 0
Q ss_pred ccccCCCCCChhhHHHHHHHhhcCCCcccccCCCCCeeEeCCCchHHHHHHHHHHcCCceEEEee-CCeeeEEeehHHHH
Q 025005 118 EKHWGTSISGPNTFIETLRERMFRPSLSTIIPEKSKVVTISPTDTVLMATKKMLELRLSSAVVTV-ENKPRGILTSKDIL 196 (259)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~g~~~Giit~~di~ 196 (259)
.....+++++|.+..++.++.+++++.+++++|.+.+.+.+||+| +|+++|++|..|++
T Consensus 169 --------------------~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll 228 (514)
T 1jcn_A 169 --------------------KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLK 228 (514)
T ss_dssp --------------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCS
T ss_pred --------------------ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHH
Confidence 012345788887212799999999999999999999999999999 99999999999997
Q ss_pred H
Q 025005 197 M 197 (259)
Q Consensus 197 ~ 197 (259)
+
T Consensus 229 ~ 229 (514)
T 1jcn_A 229 K 229 (514)
T ss_dssp S
T ss_pred H
Confidence 3
No 126
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=99.18 E-value=1e-10 Score=74.19 Aligned_cols=69 Identities=30% Similarity=0.415 Sum_probs=59.1
Q ss_pred eeEeCCCchHHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHHHHHHhcCCCCcccccccccCCCCcee
Q 025005 154 VVTISPTDTVLMATKKMLELRLSSAVVTVENKPRGILTSKDILMRVISQNLPADSTLVEKVMTPNPECA 222 (259)
Q Consensus 154 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~~~~~~~~~~~~~~~v~~~~~~~~~~v 222 (259)
+.++.+++++.++++.|.+++++++||+++|+++|++|.+|+++.+...+......+++++|.+++.++
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~~~l~Givt~~dl~~~~~~~~~~~~~~~v~~im~~~~~~v 70 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI 70 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHcCCCcccCCHHHhcCCCCeEC
Confidence 678999999999999999999999999999999999999999866655554445688999999876553
No 127
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.07 E-value=1.4e-10 Score=73.54 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=43.3
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHH
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYD 95 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~ 95 (259)
+++++.+++++.+|+++|.+++++++||+|+|+++|+++..|+++.
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~ 46 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDK 46 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHH
Confidence 3579999999999999999999999999999999999999999875
No 128
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.54 E-value=2.8e-07 Score=57.95 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=43.1
Q ss_pred CCeEEeCcchHHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHHHHH
Q 025005 50 NPTFVLSDTLAVEALQKMVQGKFRHLPVVENGEVIALLDIAKCLYD 95 (259)
Q Consensus 50 ~~~~v~~~~~l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i~~~ 95 (259)
+++++++++++.+|++.|.+++++.+||+|+|+++|+++..|+++.
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~~~l~Givt~~dl~~~ 46 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDK 46 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHH
Confidence 3578999999999999999999999999999999999999999976
No 129
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=68.89 E-value=11 Score=23.57 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=24.9
Q ss_pred CcCEEEEEcCCCeEEEEEehhHHHHHHHHhcC
Q 025005 5 RVDALLLTDSNALLCGILTDKDIATRVIAREL 36 (259)
Q Consensus 5 ~~~~~~v~~~~~~~~g~~t~~di~~~~~~~~~ 36 (259)
+.+-+-+++++|..+|+++..+.++..-..+.
T Consensus 12 r~~eVrli~~~Ge~lGv~~~~eAl~~A~e~~L 43 (78)
T 1tif_A 12 RAREVRLIDQNGDQLGIKSKQEALEIAARRNL 43 (78)
T ss_dssp CCSEEEEECTTSCEEEEEEHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCcCCCcccHHHHHHHHHHcCC
Confidence 45668899999999999999998865544443
No 130
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=44.87 E-value=14 Score=25.11 Aligned_cols=26 Identities=8% Similarity=-0.125 Sum_probs=17.3
Q ss_pred hHHHHHHHHH-HcCCceEEEee-CCeee
Q 025005 162 TVLMATKKML-ELRLSSAVVTV-ENKPR 187 (259)
Q Consensus 162 ~l~~~~~~~~-~~~~~~~~V~~-~g~~~ 187 (259)
.+...++.+. ..+...+.|+| +|..+
T Consensus 36 ~l~~~~~~~~~~~~~~~i~v~d~~G~~~ 63 (131)
T 1p0z_A 36 RIKALIDPMRSFSDATYITVGDASGQRL 63 (131)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEETTSBEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCcEE
Confidence 4555565555 46778899999 77553
No 131
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=43.95 E-value=15 Score=25.54 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=17.8
Q ss_pred chHHHHHHHHHH-cCCceEEEee-CCee
Q 025005 161 DTVLMATKKMLE-LRLSSAVVTV-ENKP 186 (259)
Q Consensus 161 ~~l~~~~~~~~~-~~~~~~~V~~-~g~~ 186 (259)
..+...++.+.+ .+...+.|+| +|..
T Consensus 41 ~~l~~~~~~~~~~~~~~~i~v~d~~G~~ 68 (142)
T 3by8_A 41 SGIQAIAEAVRKRNDLLFIVVTDMQSLR 68 (142)
T ss_dssp CSHHHHHHHHHHHTTCSEEEEEETTCBB
T ss_pred HHHHHHHHHHHhhcCCcEEEEECCCCcE
Confidence 346666666654 6778899999 7643
No 132
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=42.18 E-value=45 Score=20.66 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=23.1
Q ss_pred CceEEEee-CCeeeEEeehHHHHHHHHhcCCC
Q 025005 175 LSSAVVTV-ENKPRGILTSKDILMRVISQNLP 205 (259)
Q Consensus 175 ~~~~~V~~-~g~~~Giit~~di~~~~~~~~~~ 205 (259)
.+.+=+++ +|..+|+++..+.++.+-..+.+
T Consensus 13 ~~eVrli~~~Ge~lGv~~~~eAl~~A~e~~LD 44 (78)
T 1tif_A 13 AREVRLIDQNGDQLGIKSKQEALEIAARRNLD 44 (78)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHHHHHTTCE
T ss_pred CCEEEEECCCCcCCCcccHHHHHHHHHHcCCC
Confidence 34566788 99999999999998555455443
No 133
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=35.00 E-value=20 Score=27.27 Aligned_cols=20 Identities=15% Similarity=-0.034 Sum_probs=17.4
Q ss_pred CCceeeeecCCCceeeEEec
Q 025005 239 KFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 239 ~~~~l~Vvd~~~~~~Gvitr 258 (259)
+-..-|++|.+|+++||++-
T Consensus 187 G~SGGPLv~~~G~vVGI~s~ 206 (231)
T 3tjo_A 187 GNAGGPLVNLDGEVIGINTL 206 (231)
T ss_dssp TTTTSEEECTTSCEEEEEEE
T ss_pred CCchhHeecCCCeEEEEEeE
Confidence 66788999989999999873
No 134
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=33.85 E-value=25 Score=25.22 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=19.4
Q ss_pred HhCCCceeeeecCCCceeeEEec
Q 025005 236 HDGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 236 ~~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
...+-+.-|++|.+|+++||.+.
T Consensus 122 i~pGnSGGPl~n~~G~VVGI~~~ 144 (163)
T 2w5e_A 122 TQDGMSGAPVCDKYCRVLAVHQT 144 (163)
T ss_dssp CSSCCTTCEEECTTSCEEEEEEE
T ss_pred eCCCCchhhEEcCCCEEEEEEcc
Confidence 45677899999999999999863
No 135
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=32.75 E-value=22 Score=27.16 Aligned_cols=22 Identities=5% Similarity=-0.210 Sum_probs=18.3
Q ss_pred hCCCceeeeecCCCceeeEEec
Q 025005 237 DGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 237 ~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
..+-..-|++|.+|+++||++.
T Consensus 172 ~~G~SGGPlv~~~G~vvGI~s~ 193 (237)
T 3lgi_A 172 NHGNSGGALVNSLGELMGINTL 193 (237)
T ss_dssp CTTCTTCEEECTTCCEEEEECC
T ss_pred CCCCchHHeeCCCCeEEEEEee
Confidence 3466788999999999999874
No 136
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=30.76 E-value=55 Score=23.22 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCceEEEeeCCeeeEEeehHHHH
Q 025005 163 VLMATKKMLELRLSSAVVTVENKPRGILTSKDIL 196 (259)
Q Consensus 163 l~~~~~~~~~~~~~~~~V~~~g~~~Giit~~di~ 196 (259)
+.+.++.+...+...+.|..+|+++|+|...|.+
T Consensus 121 ~~~~~~~la~~G~T~v~VA~d~~l~GvIalaD~i 154 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVEGSRVLGVIALKDIV 154 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTEEEEEEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEEECCEEEEEEEEecCC
Confidence 6666777777887777777799999999988753
No 137
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=29.60 E-value=23 Score=26.60 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=18.5
Q ss_pred CCcCEEEEEcCCCeEEEEEehhHH
Q 025005 4 RRVDALLLTDSNALLCGILTDKDI 27 (259)
Q Consensus 4 ~~~~~~~v~~~~~~~~g~~t~~di 27 (259)
-|-+.-||+|.+|+++|+-|..|=
T Consensus 124 pGdSGsPVvn~dG~VIGVHt~s~~ 147 (213)
T 3fan_A 124 CGDSGSPVITEAGELVGVHTGSNK 147 (213)
T ss_dssp CCSTTCEEEETTSCEEEEEEC---
T ss_pred CCCCCCccCCCCCcEEEEEeccCC
Confidence 356778999999999999999994
No 138
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=29.42 E-value=29 Score=26.38 Aligned_cols=22 Identities=27% Similarity=0.075 Sum_probs=18.5
Q ss_pred CCCcCEEEEEcCCCeEEEEEeh
Q 025005 3 ARRVDALLLTDSNALLCGILTD 24 (259)
Q Consensus 3 ~~~~~~~~v~~~~~~~~g~~t~ 24 (259)
..|.+.-|++|.+|+++|+++.
T Consensus 172 ~~G~SGGPlv~~~G~vvGI~s~ 193 (237)
T 3lgi_A 172 NHGNSGGALVNSLGELMGINTL 193 (237)
T ss_dssp CTTCTTCEEECTTCCEEEEECC
T ss_pred CCCCchHHeeCCCCeEEEEEee
Confidence 3567788999989999999975
No 139
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=29.11 E-value=29 Score=26.76 Aligned_cols=21 Identities=5% Similarity=-0.179 Sum_probs=18.1
Q ss_pred CCCceeeeecCCCceeeEEec
Q 025005 238 GKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 238 ~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.+-..-|++|.+|+++||.|.
T Consensus 184 ~G~SGGPLvn~~G~vVGI~s~ 204 (245)
T 3sti_A 184 RGNSGGALLNLNGELIGINTA 204 (245)
T ss_dssp TTTTTSEEECTTSCEEEEEEC
T ss_pred CCcchhHeecCCCeEEEEEEe
Confidence 477889999999999999874
No 140
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=27.08 E-value=51 Score=23.42 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCccEeeEeeCCeEEEEEeHHHH
Q 025005 60 AVEALQKMVQGKFRHLPVVENGEVIALLDIAKC 92 (259)
Q Consensus 60 l~~a~~~~~~~~~~~~pV~d~~~~vGvi~~~~i 92 (259)
+.+.++.+.+.+-..+.|..+++++|+|...|-
T Consensus 121 ~~~~~~~la~~G~T~v~VA~d~~l~GvIalaD~ 153 (156)
T 1svj_A 121 VDQKVDQVARQGATPLVVVEGSRVLGVIALKDI 153 (156)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTEEEEEEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEEECCEEEEEEEEecC
Confidence 555666677777777777789999999977653
No 141
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=25.60 E-value=34 Score=23.92 Aligned_cols=16 Identities=13% Similarity=-0.122 Sum_probs=12.8
Q ss_pred ceeeeecCCCceeeEE
Q 025005 241 LHLPVVDRGDMPITCY 256 (259)
Q Consensus 241 ~~l~Vvd~~~~~~Gvi 256 (259)
.+.||.|++|+++|++
T Consensus 109 ~~~Pi~d~~G~~~G~v 124 (151)
T 2qkp_A 109 TYAAVRDQAGDFQGVL 124 (151)
T ss_dssp EEEEEECTTCCEEEEE
T ss_pred EEEEEECCCCCEEEEE
Confidence 3568888889999987
No 142
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}
Probab=25.53 E-value=39 Score=25.06 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=17.8
Q ss_pred CCCceeeeecCCCceeeEEec
Q 025005 238 GKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 238 ~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.+-..-|+++.+|+++||++.
T Consensus 155 ~GdSGGPlv~~~g~lvGI~s~ 175 (210)
T 2as9_A 155 PGNSGSPVLNSNNEVIGVVYG 175 (210)
T ss_dssp TTCTTCEEECTTSCEEEEECC
T ss_pred CCCccCcEECCCCeEEEEEec
Confidence 466788999988999999974
No 143
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Probab=25.17 E-value=38 Score=24.70 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=16.5
Q ss_pred CCceeeeecCCCceeeEEec
Q 025005 239 KFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 239 ~~~~l~Vvd~~~~~~Gvitr 258 (259)
+-..-|+++.+|+++||++.
T Consensus 155 GdSGGPl~~~~g~lvGI~s~ 174 (204)
T 2vid_A 155 GNSGSPVLNSNNELVGIHFA 174 (204)
T ss_dssp GGTTCEEECTTSCEEEEEEE
T ss_pred CCccCcEECCCCeEEEEEec
Confidence 45668999988999999974
No 144
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Probab=25.16 E-value=38 Score=25.87 Aligned_cols=22 Identities=9% Similarity=-0.200 Sum_probs=17.6
Q ss_pred hCCCceeeeecCCCceeeEEec
Q 025005 237 DGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 237 ~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
-.+-..-|+++.+|+++||++-
T Consensus 182 ~~GdSGGPlv~~~g~lvGI~s~ 203 (246)
T 1qtf_A 182 EVGNSGSGIFNLKGELIGIHSG 203 (246)
T ss_dssp CGGGTTCEEECTTCCEEEEEEE
T ss_pred CCCCchhheECCCCEEEEEEec
Confidence 3455678999988999999973
No 145
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=24.86 E-value=43 Score=25.17 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=18.2
Q ss_pred CCCceeeeecCCCceeeEEec
Q 025005 238 GKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 238 ~~~~~l~Vvd~~~~~~Gvitr 258 (259)
-+-+.-||+|.+|+++||-+.
T Consensus 124 pGdSGsPVvn~dG~VIGVHt~ 144 (213)
T 3fan_A 124 CGDSGSPVITEAGELVGVHTG 144 (213)
T ss_dssp CCSTTCEEEETTSCEEEEEEC
T ss_pred CCCCCCccCCCCCcEEEEEec
Confidence 467889999999999999875
No 146
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Probab=24.77 E-value=43 Score=25.33 Aligned_cols=21 Identities=10% Similarity=-0.078 Sum_probs=18.0
Q ss_pred CCCceeeeecCCCceeeEEec
Q 025005 238 GKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 238 ~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.+-..-|++|.+|+++||++.
T Consensus 180 ~GdSGGPLv~~~G~vvGI~s~ 200 (237)
T 3k6y_A 180 QGDSGGPLIDLNGQVLGVVFG 200 (237)
T ss_dssp TTCTTCEEECTTSCEEEEEEE
T ss_pred CCccHHHEECCCCEEEEEEEe
Confidence 467788999988999999974
No 147
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A
Probab=22.83 E-value=51 Score=24.00 Aligned_cols=21 Identities=14% Similarity=-0.031 Sum_probs=17.6
Q ss_pred CCCceeeeecCCCceeeEEec
Q 025005 238 GKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 238 ~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.+-..-|+++.+|+++||++.
T Consensus 151 ~GdSGGPl~~~~g~lvGI~s~ 171 (200)
T 2w7s_A 151 PGNSGSPVLNSKHELIGILYA 171 (200)
T ss_dssp TTCTTCEEECTTSCEEEEEEE
T ss_pred CCCccCeEECcCCEEEEEEec
Confidence 466788999988999999974
No 148
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=21.76 E-value=48 Score=25.48 Aligned_cols=22 Identities=32% Similarity=0.181 Sum_probs=18.6
Q ss_pred CCcCEEEEEcCCCeEEEEEehh
Q 025005 4 RRVDALLLTDSNALLCGILTDK 25 (259)
Q Consensus 4 ~~~~~~~v~~~~~~~~g~~t~~ 25 (259)
.|.+.-|++|.+|+++||.|..
T Consensus 184 ~G~SGGPLvn~~G~vVGI~s~~ 205 (245)
T 3sti_A 184 RGNSGGALLNLNGELIGINTAI 205 (245)
T ss_dssp TTTTTSEEECTTSCEEEEEECC
T ss_pred CCcchhHeecCCCeEEEEEEeE
Confidence 4677889999899999998864
No 149
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=21.49 E-value=35 Score=22.05 Aligned_cols=26 Identities=15% Similarity=0.000 Sum_probs=19.4
Q ss_pred HHHHHh-CCCceeeeecCCCceeeEEe
Q 025005 232 LHIMHD-GKFLHLPVVDRGDMPITCYS 257 (259)
Q Consensus 232 ~~~~~~-~~~~~l~Vvd~~~~~~Gvit 257 (259)
-..|.. +.+...+|++.+|+-+|.|.
T Consensus 18 ~~~Mr~~seL~Gk~Vin~dG~~LG~V~ 44 (97)
T 1pm3_A 18 GSHMRIVEEMVGKEVLDSSAKVIGKVK 44 (97)
T ss_dssp --CEETTTTSSSCEEECTTSCEEEEEE
T ss_pred CeEEEeehhCCCCEeECCCCCEEeEEE
Confidence 345666 68888899998899988874
No 150
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A
Probab=21.39 E-value=47 Score=25.14 Aligned_cols=21 Identities=5% Similarity=-0.165 Sum_probs=17.1
Q ss_pred CCCceeeeecCCCceeeEEec
Q 025005 238 GKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 238 ~~~~~l~Vvd~~~~~~Gvitr 258 (259)
.+-..-|+++.+|+++||+|.
T Consensus 192 ~GdSGGPl~~~~g~lvGI~s~ 212 (242)
T 1agj_A 192 PGNSGSGIFNSNGELVGIHSS 212 (242)
T ss_dssp GGGTTCEEECTTSEEEEEEEE
T ss_pred CCCCchHhcccCCEEEEEEec
Confidence 455678999888999999974
No 151
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=21.36 E-value=43 Score=25.61 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=18.1
Q ss_pred hCCCceeeeecCCCceeeEEec
Q 025005 237 DGKFLHLPVVDRGDMPITCYSK 258 (259)
Q Consensus 237 ~~~~~~l~Vvd~~~~~~Gvitr 258 (259)
..+-..-|++|.+|+++||++.
T Consensus 179 ~~G~SGGPLv~~~G~vvGI~s~ 200 (239)
T 1l1j_A 179 NPGNSGGPLLNIHGEVIGINTA 200 (239)
T ss_dssp CTTTTTSEEECSSSEEEEEECC
T ss_pred CCCCccHHhccCCCeEEEEEee
Confidence 3456788999989999999874
Done!