Query 025006
Match_columns 259
No_of_seqs 160 out of 1102
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 09:12:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02622 iron superoxide dismu 100.0 1.2E-81 2.7E-86 569.9 23.9 254 6-259 1-261 (261)
2 COG0605 SodA Superoxide dismut 100.0 1.4E-78 3.1E-83 531.1 20.9 200 44-247 2-203 (204)
3 PLN02184 superoxide dismutase 100.0 6.5E-78 1.4E-82 532.0 21.5 205 39-246 4-208 (212)
4 PRK10543 superoxide dismutase; 100.0 1.5E-76 3.3E-81 516.7 20.3 191 45-243 2-192 (193)
5 PLN02685 iron superoxide dismu 100.0 5E-76 1.1E-80 540.6 22.6 208 41-249 42-264 (299)
6 PRK10925 superoxide dismutase; 100.0 5.3E-75 1.1E-79 511.5 20.3 196 45-245 2-205 (206)
7 PTZ00078 Superoxide dismutase 100.0 2E-73 4.4E-78 497.0 20.7 190 49-246 1-191 (193)
8 PLN02471 superoxide dismutase 100.0 7.1E-72 1.5E-76 498.7 20.4 196 44-246 29-230 (231)
9 KOG0876 Manganese superoxide d 100.0 3.1E-71 6.6E-76 489.7 19.6 217 29-247 11-231 (234)
10 PF02777 Sod_Fe_C: Iron/mangan 100.0 1.6E-46 3.5E-51 298.3 11.9 106 136-242 1-106 (106)
11 PF00081 Sod_Fe_N: Iron/mangan 100.0 2.1E-30 4.5E-35 197.8 4.9 82 45-131 1-82 (82)
12 PF13348 Y_phosphatase3C: Tyro 48.1 20 0.00044 25.4 2.8 19 141-159 33-51 (68)
13 PF12411 Choline_sulf_C: Choli 32.1 41 0.00088 23.9 2.2 22 216-241 27-51 (54)
14 COG4700 Uncharacterized protei 29.7 43 0.00093 30.3 2.4 21 69-89 228-248 (251)
15 TIGR02118 conserved hypothetic 27.5 52 0.0011 25.1 2.3 23 59-82 9-31 (100)
16 PF08025 Antimicrobial_3: Spid 25.3 90 0.002 20.1 2.6 26 140-165 7-32 (37)
17 PF13185 GAF_2: GAF domain; PD 21.5 2E+02 0.0044 21.8 4.7 36 153-190 4-41 (148)
18 PF12826 HHH_2: Helix-hairpin- 20.9 64 0.0014 23.0 1.6 32 140-171 13-44 (64)
19 PF07110 EthD: EthD domain; I 20.7 88 0.0019 22.8 2.4 22 60-81 1-22 (95)
No 1
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=1.2e-81 Score=569.90 Aligned_cols=254 Identities=80% Similarity=1.339 Sum_probs=227.2
Q ss_pred cCCCCCCccccc-----cCCCCCcchhhhh--hccccccccccceeccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 025006 6 CNPLAPPSTHLL-----LNPSKIPKFCHSR--RQLHGSQRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGY 78 (259)
Q Consensus 6 ~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lp~LpY~~~~LeP~iS~~tl~~H~~khh~~Y 78 (259)
||-..|.|..++ -...+.++|.+.| .+..+.+..+...+.|+||+|||++++|||+||++||++||+|||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lpY~~~aLeP~iS~~tl~~H~~kHh~~Y 80 (261)
T PLN02622 1 CNSSVPTSSCFVTDSDLSIRLKSPKLLNLRNKQRRRSLQRASKVVAYYGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGY 80 (261)
T ss_pred CCCCCCccceeeecchHHHhhcCHHHhhhccccccccccccccccccccCCCCCCCccccccccCHHHHHHHHHHHHHHH
Confidence 555555554443 2456677887633 445566666778889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCccccchhhhhhhhhhhhhcCCCCCCCCCHHHHHHHHhhcCCHHHHHH
Q 025006 79 VEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKE 158 (259)
Q Consensus 79 V~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~~fn~ag~~~NH~ffw~~L~P~~~~~P~~~L~~aI~~~FGS~d~fk~ 158 (259)
|++||+++++++++++.++++|+......+....+||+||||+||+|||++|+|++++.|++.|+++|+++|||+|+||+
T Consensus 81 V~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~vfnna~g~~NH~~Fw~~L~P~g~~~P~g~L~~aI~~~FGS~d~Fk~ 160 (261)
T PLN02622 81 VEGLNKQLAKDDILYGYTMDELVKVTYNNGNPLPEFNNAAQVWNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFRE 160 (261)
T ss_pred HHHHHHHHhCchhhhcCCHHHHHHHhhccchhHHHHHHHHhHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhcCHHHHHH
Confidence 99999999998767788999998765555545669999999999999999999988778999999999999999999999
Q ss_pred HHHHHHhcCCCceEEEEEEeCCCCeEEEEEecCCCCCCCCCCcceEEecCcchhhhhhhccChHHHHHHHHhcCCCHHHH
Q 025006 159 KFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIPIISLDMWEHAYYLDYKNDKGTYANVFMNHLVSWNAA 238 (259)
Q Consensus 159 ~F~~~A~s~fGsGWvWLv~d~~~g~L~I~~t~n~~~p~~~g~~PLL~iDvWEHAYylDY~n~R~~Yi~~~w~~vINW~~V 238 (259)
+|+++|.++|||||+|||+|+.+|+|.|++|+|+++|++.+.+|||||||||||||+||||+|++||++||+++|||++|
T Consensus 161 ~F~~aA~s~fGSGW~WLv~d~~~g~L~I~~t~N~~~Pl~~~~~PLL~lDvWEHAYYlDY~N~R~~Yv~~~w~~iInW~~v 240 (261)
T PLN02622 161 KFTEAALTLFGSGWVWLVLKREERRLEVVKTSNAINPLVWDDIPIICLDVWEHAYYLDYKNDRGKYVNAFMNHLVSWNAA 240 (261)
T ss_pred HHHHHHhhcCCceEEEEEEeCCCCeEEEEecCCCCCCccCCCEeEEEEechhhhhHHhhccChHHHHHHHHHcccCHHHH
Confidence 99999999999999999999878999999999999999999999999999999999999999999999999756999999
Q ss_pred HHHHHHHHhhhhcCCCCCCCC
Q 025006 239 MSRMARAEAFVNLGEPKIPIA 259 (259)
Q Consensus 239 ~~R~~~a~~~~~~~~~~~~~~ 259 (259)
++||.+|..+++++|||||+|
T Consensus 241 ~~R~~~~~~~~~~~~~~~~~~ 261 (261)
T PLN02622 241 MARMARAEAFVNLGEPKIPIA 261 (261)
T ss_pred HHHHHHhhcccccCCCCCCCC
Confidence 999999999999999999997
No 2
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-78 Score=531.08 Aligned_cols=200 Identities=43% Similarity=0.811 Sum_probs=188.1
Q ss_pred eccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCh-hhhcCCHHHHHHHHhcCCCCCccccchhhhhh
Q 025006 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDD-VLYGYTLDELVKVSYNSGNPLPVFNNAVQVWN 122 (259)
Q Consensus 44 ~~~~lp~LpY~~~~LeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~-~~~~~~l~~li~~~~~~~~~~~~fn~ag~~~N 122 (259)
..|+||+|||+|++|||+||++||++||+||||+||++||+++++++ ++++.++++++......+. .++||+|||+|
T Consensus 2 ~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~nn~~gh~N 79 (204)
T COG0605 2 MAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKKLAGLPA--ALFNNAGGHWN 79 (204)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHhcccH--HHHhcchhhhh
Confidence 57999999999999999999999999999999999999999999976 4889999998877643321 48999999999
Q ss_pred hhhhhhhcCCC-CCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEeCCCCeEEEEEecCCCCCCCCCCc
Q 025006 123 HDFFWESMQPG-GGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDI 201 (259)
Q Consensus 123 H~ffw~~L~P~-~~~~P~~~L~~aI~~~FGS~d~fk~~F~~~A~s~fGsGWvWLv~d~~~g~L~I~~t~n~~~p~~~g~~ 201 (259)
|+|||++|+|+ ++++|+|+|+++|+++|||||+||++|+++|.++|||||+|||+|+ .++|.|++|+||++|++.+.+
T Consensus 80 H~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~-~~kL~i~~t~n~~~p~~~~~~ 158 (204)
T COG0605 80 HSLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDP-DGKLEIVSTYNQDTPLMWGSV 158 (204)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECC-CCcEEEEeccCCCCcccCCCC
Confidence 99999999996 8889999999999999999999999999999999999999999998 679999999999999999999
Q ss_pred ceEEecCcchhhhhhhccChHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 025006 202 PIISLDMWEHAYYLDYKNDKGTYANVFMNHLVSWNAAMSRMARAEA 247 (259)
Q Consensus 202 PLL~iDvWEHAYylDY~n~R~~Yi~~~w~~vINW~~V~~R~~~a~~ 247 (259)
|||||||||||||+||||+|++||++||+ +|||++|++||+++++
T Consensus 159 PiL~lDvWEHAYYldY~N~R~~Yv~afwn-vVNW~~V~~r~~~a~~ 203 (204)
T COG0605 159 PLLGLDVWEHAYYLDYGNRRPDYVEAFWN-VVNWDEVEERFEAAKK 203 (204)
T ss_pred ceEEecchHHHHHHHhccCcHHHHHHHHH-hcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999997 8999999999998864
No 3
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=6.5e-78 Score=531.98 Aligned_cols=205 Identities=50% Similarity=0.974 Sum_probs=191.4
Q ss_pred cccceeccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCccccchh
Q 025006 39 ASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAV 118 (259)
Q Consensus 39 ~~~~~~~~~lp~LpY~~~~LeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~~fn~ag 118 (259)
.+.+++.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ +++.++++|+..++..+....+||+||
T Consensus 4 ~~~~~~~~~lp~Lpy~~~aLeP~iS~~t~~~Hh~kHh~~YV~~LN~~l~~~~-~~~~~l~~ii~~~~~~~~~~~ifnnag 82 (212)
T PLN02184 4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTE-LEGKPLEHIIHSTYNNGDLLPAFNNAA 82 (212)
T ss_pred hhhhccceeCCCCCCCcccCccccCHHHHHHHHHHHHHHHHHHHHHHhcCch-hhcCCHHHHHHHhcccchHHHHHHhHH
Confidence 3457789999999999999999999999999999999999999999999987 888999999876655544456899999
Q ss_pred hhhhhhhhhhhcCCCCCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEeCCCCeEEEEEecCCCCCCCC
Q 025006 119 QVWNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVW 198 (259)
Q Consensus 119 ~~~NH~ffw~~L~P~~~~~P~~~L~~aI~~~FGS~d~fk~~F~~~A~s~fGsGWvWLv~d~~~g~L~I~~t~n~~~p~~~ 198 (259)
||+||+|||+||+|+++++|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+ ++|.|++|.|+++|++.
T Consensus 83 g~~NH~~fw~~L~p~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~~--~~L~i~~t~n~~~P~~~ 160 (212)
T PLN02184 83 QAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSN--EKLKVVKTPNAVNPLVL 160 (212)
T ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEeecCCCCCccC
Confidence 9999999999999988789999999999999999999999999999999999999999995 79999999999999999
Q ss_pred CCcceEEecCcchhhhhhhccChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 025006 199 NDIPIISLDMWEHAYYLDYKNDKGTYANVFMNHLVSWNAAMSRMARAE 246 (259)
Q Consensus 199 g~~PLL~iDvWEHAYylDY~n~R~~Yi~~~w~~vINW~~V~~R~~~a~ 246 (259)
+.+|||||||||||||+||||+|++||++||+++|||++|++||.++.
T Consensus 161 ~~~PlL~iDvWEHAYyldY~n~r~~Yl~~~w~~~inW~~v~~r~~~~~ 208 (212)
T PLN02184 161 GSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAK 208 (212)
T ss_pred CCeeEEEEecchhhhHHHhccCHHHHHHHHHHhccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999954899999999998764
No 4
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=1.5e-76 Score=516.66 Aligned_cols=191 Identities=43% Similarity=0.811 Sum_probs=181.6
Q ss_pred ccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCccccchhhhhhhh
Q 025006 45 YYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHD 124 (259)
Q Consensus 45 ~~~lp~LpY~~~~LeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~~fn~ag~~~NH~ 124 (259)
.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ +++.++++|+... ...+||+|||++||+
T Consensus 2 ~~~lp~Lpy~~~~Lep~is~~~~~~H~~kHh~~YV~~LN~~~~~~~-~~~~~l~~ii~~~-----~~~ifnna~g~~NH~ 75 (193)
T PRK10543 2 SFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTA-FEGKSLEEIVRSS-----EGGVFNNAAQVWNHT 75 (193)
T ss_pred CCcCCCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHhcch-hhcCCHHHHHHhh-----HHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999887 8889999988543 235999999999999
Q ss_pred hhhhhcCCCCCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEeCCCCeEEEEEecCCCCCCCCCCcceE
Q 025006 125 FFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIPII 204 (259)
Q Consensus 125 ffw~~L~P~~~~~P~~~L~~aI~~~FGS~d~fk~~F~~~A~s~fGsGWvWLv~d~~~g~L~I~~t~n~~~p~~~g~~PLL 204 (259)
|||++|+|.++++|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+ +|+|.|++|+|+++|++.+.+|||
T Consensus 76 lfw~~L~p~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~~-~~~L~I~~t~n~~~p~~~~~~PlL 154 (193)
T PRK10543 76 FYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNA-DGKLAIVSTSNAGTPLTTDATPLL 154 (193)
T ss_pred HHHHhcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-CCCEEEEeccCCCCCcCCCCEeEE
Confidence 9999999987788999999999999999999999999999999999999999997 789999999999999999999999
Q ss_pred EecCcchhhhhhhccChHHHHHHHHhcCCCHHHHHHHHH
Q 025006 205 SLDMWEHAYYLDYKNDKGTYANVFMNHLVSWNAAMSRMA 243 (259)
Q Consensus 205 ~iDvWEHAYylDY~n~R~~Yi~~~w~~vINW~~V~~R~~ 243 (259)
||||||||||+||||+|++||++||+ +|||++|++||+
T Consensus 155 ~lDvWEHAYyldY~n~r~~Yv~~~w~-~inW~~v~~r~~ 192 (193)
T PRK10543 155 TVDVWEHAYYIDYRNARPGYLEHFWA-LVNWEFVAKNLA 192 (193)
T ss_pred EEecchhhhHHHhccCHHHHHHHHHh-ccCHHHHHHHhc
Confidence 99999999999999999999999998 899999999995
No 5
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=5e-76 Score=540.61 Aligned_cols=208 Identities=53% Similarity=1.025 Sum_probs=193.3
Q ss_pred cceeccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCccccchhhh
Q 025006 41 KIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQV 120 (259)
Q Consensus 41 ~~~~~~~lp~LpY~~~~LeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~~fn~ag~~ 120 (259)
...+.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ ++++++++|+..+..+.....+||+||||
T Consensus 42 ~~~~~~~Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~~LN~al~~t~-l~~~sl~eii~~~~~~~~~~~ifNnaggh 120 (299)
T PLN02685 42 VITAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVGTE-LDGMSLEDVVLITYNKGDMLPAFNNAAQA 120 (299)
T ss_pred ccccceecCCCCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHcCch-hhcCCHHHHHHHhhccchhHHHHHHHHHH
Confidence 35578999999999999999999999999999999999999999999987 88899999987766555555689999999
Q ss_pred hhhhhhhhhcCCCCCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEeC---------------CCCeEE
Q 025006 121 WNHDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKR---------------EERRLA 185 (259)
Q Consensus 121 ~NH~ffw~~L~P~~~~~P~~~L~~aI~~~FGS~d~fk~~F~~~A~s~fGsGWvWLv~d~---------------~~g~L~ 185 (259)
+||+|||+||+|++++.|++.|+++|+++|||||+||++|+++|.++|||||+|||+++ .+++|.
T Consensus 121 ~NH~fFWe~L~P~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s~fGSGWvWLV~~~~~~~~~~~~np~~~~~~~~L~ 200 (299)
T PLN02685 121 WNHEFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQFGSGWAWLAYKANRLDVGNAVNPCPSEEDKKLV 200 (299)
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEccccccccccccccccccCCcee
Confidence 99999999999988889999999999999999999999999999999999999999975 358999
Q ss_pred EEEecCCCCCCCCCCcceEEecCcchhhhhhhccChHHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q 025006 186 VVKTSNAINPLVWNDIPIISLDMWEHAYYLDYKNDKGTYANVFMNHLVSWNAAMSRMARAEAFV 249 (259)
Q Consensus 186 I~~t~n~~~p~~~g~~PLL~iDvWEHAYylDY~n~R~~Yi~~~w~~vINW~~V~~R~~~a~~~~ 249 (259)
|++|.|+++|+..+.+|||||||||||||+||||+|++||++||+++|||++|++||.++..-+
T Consensus 201 i~~t~n~d~pl~~~~~PLL~iDVWEHAYYlDY~N~Ra~Yv~afw~~vINW~~V~~R~~~a~~~~ 264 (299)
T PLN02685 201 VVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISTFMEKLVSWEAVSARLESAKARA 264 (299)
T ss_pred EEeccCCCCCccCCCEeEEEEecchhhhHHHhccChHHHHHHHHHcccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999975799999999999887644
No 6
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=5.3e-75 Score=511.53 Aligned_cols=196 Identities=40% Similarity=0.668 Sum_probs=180.2
Q ss_pred ccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCC--CCccccchhhhhh
Q 025006 45 YYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGN--PLPVFNNAVQVWN 122 (259)
Q Consensus 45 ~~~lp~LpY~~~~LeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~--~~~~fn~ag~~~N 122 (259)
.|+||+|||+|++|||+||++||++||+|||++||++||+++++++++++.++++|+......+. +..+||||||++|
T Consensus 2 ~~~lp~Lpy~~~aLep~is~~t~~~H~~kHh~~YV~~LN~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~i~nna~g~~N 81 (206)
T PRK10925 2 SYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHAN 81 (206)
T ss_pred CCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccHHhhcCCHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999876788999999866543332 2348899999999
Q ss_pred hhhhhhhcCCCCCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEeCCCCeEEEEEecCCCCCCCC----
Q 025006 123 HDFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVW---- 198 (259)
Q Consensus 123 H~ffw~~L~P~~~~~P~~~L~~aI~~~FGS~d~fk~~F~~~A~s~fGsGWvWLv~d~~~g~L~I~~t~n~~~p~~~---- 198 (259)
|+|||+||+|+ +.|++.|+++|+++|||||+||++|+++|.++|||||+|||+|+ ++|.|++|+|+++|++.
T Consensus 82 H~~fw~~L~P~--~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~~--~~L~i~~t~N~~~p~~~~~~~ 157 (206)
T PRK10925 82 HSLFWKGLKKG--TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKG--DKLAVVSTANQDSPLMGEAIS 157 (206)
T ss_pred HHHHHhccCCC--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEeC--CEEEEEeccCCCCCccccccc
Confidence 99999999994 47999999999999999999999999999999999999999984 79999999999999974
Q ss_pred --CCcceEEecCcchhhhhhhccChHHHHHHHHhcCCCHHHHHHHHHHH
Q 025006 199 --NDIPIISLDMWEHAYYLDYKNDKGTYANVFMNHLVSWNAAMSRMARA 245 (259)
Q Consensus 199 --g~~PLL~iDvWEHAYylDY~n~R~~Yi~~~w~~vINW~~V~~R~~~a 245 (259)
+.+|||||||||||||+||||+|++||++||+ +|||++|++||.++
T Consensus 158 ~~~~~PlL~iDvWEHAYyldY~n~R~~Yv~~~w~-~inW~~v~~r~~~~ 205 (206)
T PRK10925 158 GASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAK 205 (206)
T ss_pred cCCCceeEEEechHHHhHHHHccCHHHHHHHHHh-ccCHHHHHHHHHhc
Confidence 35899999999999999999999999999998 89999999999865
No 7
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=2e-73 Score=496.99 Aligned_cols=190 Identities=43% Similarity=0.805 Sum_probs=179.2
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCccccchhhhhhhhhhhh
Q 025006 49 KTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHDFFWE 128 (259)
Q Consensus 49 p~LpY~~~~LeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~~fn~ag~~~NH~ffw~ 128 (259)
|+|||+|++|||+||++||++||++||++||++||+++++++ +++.++++++... ...+||+|||++||+|||+
T Consensus 1 p~Lpy~~~~Lep~iS~~~l~~H~~~hh~~YV~~lN~~~~~~~-~~~~~~~~ii~~~-----~~~~~n~a~g~~NH~lfw~ 74 (193)
T PTZ00078 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTP-LENKTLEELIKEY-----SGAVFNNAAQIWNHNFYWL 74 (193)
T ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999988 7889999988653 1368999999999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEeCCCCeEEEEEecCCCCCCCCC-CcceEEec
Q 025006 129 SMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWN-DIPIISLD 207 (259)
Q Consensus 129 ~L~P~~~~~P~~~L~~aI~~~FGS~d~fk~~F~~~A~s~fGsGWvWLv~d~~~g~L~I~~t~n~~~p~~~g-~~PLL~iD 207 (259)
+|+|+++++|+++|+++|+++|||+|+||++|+++|.++|||||||||++. +|+|.|++|+|+++|++.+ .+||||||
T Consensus 75 ~L~p~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~~-~~~L~i~~t~n~~~p~~~~~~~PlL~lD 153 (193)
T PTZ00078 75 SMGPNGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLKN-DGKLEIVQTHDAGNPIKDNTGKPLLTCD 153 (193)
T ss_pred hcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-CCcEEEEeccCCCCCccCCCCceEEEec
Confidence 999988788999999999999999999999999999999999999999864 7999999999999999864 79999999
Q ss_pred CcchhhhhhhccChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 025006 208 MWEHAYYLDYKNDKGTYANVFMNHLVSWNAAMSRMARAE 246 (259)
Q Consensus 208 vWEHAYylDY~n~R~~Yi~~~w~~vINW~~V~~R~~~a~ 246 (259)
|||||||+||||+|++||++||+ +|||++|++||.+++
T Consensus 154 vWEHAYyldY~n~r~~Yi~~~w~-~inW~~v~~r~~~~~ 191 (193)
T PTZ00078 154 IWEHAYYIDYRNDRASYVNSWWN-KVNWDFANKNLKKLM 191 (193)
T ss_pred cchhhhHHHHccCHHHHHHHHHH-ccCHHHHHHHHHHHh
Confidence 99999999999999999999998 899999999999886
No 8
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=7.1e-72 Score=498.75 Aligned_cols=196 Identities=30% Similarity=0.525 Sum_probs=175.3
Q ss_pred eccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChh-hhcCCHHHHHHHHhcCCCCCccccchhhhhh
Q 025006 44 AYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDV-LYGYTLDELVKVSYNSGNPLPVFNNAVQVWN 122 (259)
Q Consensus 44 ~~~~lp~LpY~~~~LeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~-~~~~~l~~li~~~~~~~~~~~~fn~ag~~~N 122 (259)
+.|+||+|||+|++|||+||++||++||+|||++||++||+++++++. .+..++.+++.. ...++||+|||+|
T Consensus 29 ~~~~lp~Lpy~~~aLep~iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~~~~~~i~~~------~~~~~~n~gg~~N 102 (231)
T PLN02471 29 QTFTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEKGDASAVVKL------QSAIKFNGGGHVN 102 (231)
T ss_pred ccccCCCCCCCcccchhhcCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhcccCCHHHHHhh------hhhhhhHHHHHHh
Confidence 679999999999999999999999999999999999999999987642 234456555432 1248899999999
Q ss_pred hhhhhhhcCCC--CCCC-CCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEeCCCCeEEEEEecCCCCCCCCC
Q 025006 123 HDFFWESMQPG--GGDI-PKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWN 199 (259)
Q Consensus 123 H~ffw~~L~P~--~~~~-P~~~L~~aI~~~FGS~d~fk~~F~~~A~s~fGsGWvWLv~d~~~g~L~I~~t~n~~~p~~~g 199 (259)
|+|||++|+|. +++. |++.|+++|+++|||||+||++|+++|.++|||||+|||+|+.+|+|.|++|+|+|+|+..+
T Consensus 103 H~~fw~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d~~~~~L~i~~t~n~d~~~~~~ 182 (231)
T PLN02471 103 HSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLDKELKKLVVETTANQDPLVTKG 182 (231)
T ss_pred HHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEeCCCCeEEEEeecCCCCCcccC
Confidence 99999999985 3344 68999999999999999999999999999999999999999877999999999999887654
Q ss_pred --CcceEEecCcchhhhhhhccChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 025006 200 --DIPIISLDMWEHAYYLDYKNDKGTYANVFMNHLVSWNAAMSRMARAE 246 (259)
Q Consensus 200 --~~PLL~iDvWEHAYylDY~n~R~~Yi~~~w~~vINW~~V~~R~~~a~ 246 (259)
.+|||||||||||||+||||+|++||++||+ +|||++|++||++++
T Consensus 183 ~~~~PiL~iDvWEHAYylDY~n~R~~Yi~~~w~-~inW~~v~~r~~~~~ 230 (231)
T PLN02471 183 PSLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWK-VMNWKYASEVYEKEC 230 (231)
T ss_pred CCCceEEEeechhhHhHHHhccCHHHHHHHHHH-ccCHHHHHHHHHhhc
Confidence 5899999999999999999999999999998 899999999998764
No 9
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-71 Score=489.69 Aligned_cols=217 Identities=36% Similarity=0.712 Sum_probs=196.5
Q ss_pred hhhccccccccccceeccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCC
Q 025006 29 SRRQLHGSQRASKIIAYYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSG 108 (259)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~lp~LpY~~~~LeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~ 108 (259)
.+|+......-...+..+.||+|||+|++|||.||+++|++||+|||++||++||++++++.++.++...+++. ++..+
T Consensus 11 ~~~~~~~~~~~~~v~~~~~lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~~~~~~~~-t~~~~ 89 (234)
T KOG0876|consen 11 KKRRSLKLLFSLAVRQKATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSL-TAIAP 89 (234)
T ss_pred HhhcccceeeheeeeeeecCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhH-hccCh
Confidence 44444444444567889999999999999999999999999999999999999999999988556666655554 66677
Q ss_pred CCCccccchhhhhhhhhhhhhcCCCCCCCCCHH-HHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEeCCCCeEEEE
Q 025006 109 NPLPVFNNAVQVWNHDFFWESMQPGGGDIPKYG-VLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVV 187 (259)
Q Consensus 109 ~~~~~fn~ag~~~NH~ffw~~L~P~~~~~P~~~-L~~aI~~~FGS~d~fk~~F~~~A~s~fGsGWvWLv~d~~~g~L~I~ 187 (259)
++...||+||+++||+|||++|.|+++++|.+. |.++|+++|||+|+|+++|++++.++|||||+|||+++..++|.|+
T Consensus 90 ~~a~~Fn~~~~~~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~~~~kL~i~ 169 (234)
T KOG0876|consen 90 QPAPKFNGAGHIYNHSFFWENLAPPGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYNKELKKLFIL 169 (234)
T ss_pred hhhhhcCCccccccchhhhhhccCCCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEcCCCCeEEEE
Confidence 778899999999999999999999988899877 9999999999999999999999999999999999999966899999
Q ss_pred EecCCCCCCCCC---CcceEEecCcchhhhhhhccChHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 025006 188 KTSNAINPLVWN---DIPIISLDMWEHAYYLDYKNDKGTYANVFMNHLVSWNAAMSRMARAEA 247 (259)
Q Consensus 188 ~t~n~~~p~~~g---~~PLL~iDvWEHAYylDY~n~R~~Yi~~~w~~vINW~~V~~R~~~a~~ 247 (259)
+|+||++|+.++ .+|||||||||||||+||||+|++||++||+ +|||++|++||+++..
T Consensus 170 ~T~Na~~P~~~~t~~~vPLl~IDvWeHAYyldY~n~R~~Yi~~~wd-~inW~~v~~R~~~~k~ 231 (234)
T KOG0876|consen 170 TTYNAGDPLVWTTGQLVPLLGIDVWEHAYYLDYGNVRAEYIKAIWD-VINWKVVSERFEAAKI 231 (234)
T ss_pred ecCCCCCCeeccCCCccceEEEecchhHhHHHhccchHHHHHHHHH-HhcHHHHHHHHHHhhh
Confidence 999999999987 8999999999999999999999999999999 8999999999997654
No 10
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=100.00 E-value=1.6e-46 Score=298.29 Aligned_cols=106 Identities=43% Similarity=0.940 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCceEEEEEEeCCCCeEEEEEecCCCCCCCCCCcceEEecCcchhhhh
Q 025006 136 DIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERRLAVVKTSNAINPLVWNDIPIISLDMWEHAYYL 215 (259)
Q Consensus 136 ~~P~~~L~~aI~~~FGS~d~fk~~F~~~A~s~fGsGWvWLv~d~~~g~L~I~~t~n~~~p~~~g~~PLL~iDvWEHAYyl 215 (259)
++|++.|+++|+++|||+|+||++|.++|.++|||||+|||+|+.+++|.|++|.|+++|+..+.+|||||||||||||+
T Consensus 1 g~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~~~~L~i~~t~n~~~p~~~~~~Pll~iD~weHaY~~ 80 (106)
T PF02777_consen 1 GKPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYDPSDGKLSIISTPNHDTPIIWGLIPLLCIDVWEHAYYL 80 (106)
T ss_dssp SS-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETTTTEEEEEEEETTTBGGGGTEEEEEEEE-SGGGTHH
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeeccccceeeeeeecccccccchhhccchhhhhhHHHHHH
Confidence 47999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hhccChHHHHHHHHhcCCCHHHHHHHH
Q 025006 216 DYKNDKGTYANVFMNHLVSWNAAMSRM 242 (259)
Q Consensus 216 DY~n~R~~Yi~~~w~~vINW~~V~~R~ 242 (259)
||||+|++||++||+ +|||++|++||
T Consensus 81 dy~~~r~~Yv~~~~~-~inW~~v~~r~ 106 (106)
T PF02777_consen 81 DYGNKRADYVEAFWN-VINWEVVEKRY 106 (106)
T ss_dssp HHTTHHHHHHHHHGG-GBBHHHHHHHH
T ss_pred HHhccHHHHHHHHHH-HcCHHHHHhhC
Confidence 999999999999998 79999999998
No 11
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.96 E-value=2.1e-30 Score=197.85 Aligned_cols=82 Identities=43% Similarity=0.760 Sum_probs=69.1
Q ss_pred ccccCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHhcCCCCCccccchhhhhhhh
Q 025006 45 YYGLKTPPYKLDALEPYMSKRTLEVHWGELHRGYVEGLNKHLAKDDVLYGYTLDELVKVSYNSGNPLPVFNNAVQVWNHD 124 (259)
Q Consensus 45 ~~~lp~LpY~~~~LeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~~fn~ag~~~NH~ 124 (259)
.|+||+|||+|++|||+||++||++||+|||++||++||+++++++ +++.++++++... .+..++|||||++||+
T Consensus 1 ~f~Lp~LpY~y~aLeP~is~~t~~~H~~kHh~~YV~~lN~~~~~~~-~~~~~~~~~~~~~----~~~~~~nn~gg~~NH~ 75 (82)
T PF00081_consen 1 KFELPPLPYAYDALEPYISEETMELHHDKHHQGYVNNLNKALEKTE-LEGKSLEEIISNA----LRAALRNNAGGHYNHS 75 (82)
T ss_dssp SS-----SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHTTCH-HHTSTHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cccccchhhhhhh----hhHHHHHHcchhhhHH
Confidence 4899999999999999999999999999999999999999999996 8899999988652 2357999999999999
Q ss_pred hhhhhcC
Q 025006 125 FFWESMQ 131 (259)
Q Consensus 125 ffw~~L~ 131 (259)
|||++|+
T Consensus 76 ~fw~~ls 82 (82)
T PF00081_consen 76 FFWENLS 82 (82)
T ss_dssp HHHHTB-
T ss_pred HHHHHcC
Confidence 9999995
No 12
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=48.07 E-value=20 Score=25.44 Aligned_cols=19 Identities=26% Similarity=0.650 Sum_probs=16.1
Q ss_pred HHHHHHHhhcCCHHHHHHH
Q 025006 141 GVLEQIEKDFGSFTNFKEK 159 (259)
Q Consensus 141 ~L~~aI~~~FGS~d~fk~~ 159 (259)
...+.|++.|||+++|..+
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4678999999999999854
No 13
>PF12411 Choline_sulf_C: Choline sulfatase enzyme C terminal
Probab=32.13 E-value=41 Score=23.89 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.0
Q ss_pred hhc---cChHHHHHHHHhcCCCHHHHHHH
Q 025006 216 DYK---NDKGTYANVFMNHLVSWNAAMSR 241 (259)
Q Consensus 216 DY~---n~R~~Yi~~~w~~vINW~~V~~R 241 (259)
||+ .....||.+ | ++|+.+|.+
T Consensus 27 DyqP~~das~~YvRn---h-~~Ld~lE~~ 51 (54)
T PF12411_consen 27 DYQPPQDASQRYVRN---H-MDLDDLERR 51 (54)
T ss_pred CCCCCcCcHHHHHHc---C-CCHHHHHHH
Confidence 565 678999998 6 899999876
No 14
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=29.74 E-value=43 Score=30.29 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 025006 69 VHWGELHRGYVEGLNKHLAKD 89 (259)
Q Consensus 69 ~H~~khh~~YV~~LN~~l~~~ 89 (259)
-||.|||++.++..|..++++
T Consensus 228 ~H~rkh~reW~~~A~~~~~qs 248 (251)
T COG4700 228 PHYRKHHREWIKTANERLKQS 248 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 399999999999999988754
No 15
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=27.52 E-value=52 Score=25.12 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 025006 59 EPYMSKRTLEVHWGELHRGYVEGL 82 (259)
Q Consensus 59 eP~iS~~tl~~H~~khh~~YV~~L 82 (259)
.| +|.++++.||..+|...+.++
T Consensus 9 ~p-~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 9 QP-EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred CC-CCHHHHHHHHHhccHHHHHhC
Confidence 36 899999999999999888875
No 16
>PF08025 Antimicrobial_3: Spider antimicrobial peptide; InterPro: IPR012522 This family includes antimicrobial peptides isolated from the crude venom of the wolf spider Oxyopes kitabensis (Wolf spider). These peptides, known as oxyopinins, are the largest linear cationic amphipathic peptides chemically characterised and exhibit disrupting activities towards biological membranes [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=25.27 E-value=90 Score=20.08 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHh
Q 025006 140 YGVLEQIEKDFGSFTNFKEKFIGAAL 165 (259)
Q Consensus 140 ~~L~~aI~~~FGS~d~fk~~F~~~A~ 165 (259)
+++..+|.+-|-.+..-+++|++++.
T Consensus 7 ~kilrsiak~fkgvgk~rkqfk~asd 32 (37)
T PF08025_consen 7 SKILRSIAKFFKGVGKVRKQFKEASD 32 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 46889999999999999999998863
No 17
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=21.47 E-value=2e+02 Score=21.82 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhcCCC--ceEEEEEEeCCCCeEEEEEec
Q 025006 153 FTNFKEKFIGAALTLFG--SGYVWLVLKREERRLAVVKTS 190 (259)
Q Consensus 153 ~d~fk~~F~~~A~s~fG--sGWvWLv~d~~~g~L~I~~t~ 190 (259)
++++.+...+.+...+| .||+||+ |+ ++.+..+...
T Consensus 4 ~~ell~~~~~~~~~~~~~~~~~i~l~-d~-~~~~~~~~~~ 41 (148)
T PF13185_consen 4 LEELLQQILDALLELTGADAGAIYLY-DP-DGQLLPVAAS 41 (148)
T ss_dssp HHHHHHHHHHHHHHHHS-SEEEEEEE-ET-TSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEE-EC-CCcEEEEEEe
Confidence 45555665555555555 4777777 87 4444444433
No 18
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=20.86 E-value=64 Score=22.95 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=20.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCce
Q 025006 140 YGVLEQIEKDFGSFTNFKEKFIGAALTLFGSG 171 (259)
Q Consensus 140 ~~L~~aI~~~FGS~d~fk~~F~~~A~s~fGsG 171 (259)
..-++.+-+.|||+|++++.=.+.-..+-|-|
T Consensus 13 ~~~ak~L~~~f~sl~~l~~a~~e~L~~i~gIG 44 (64)
T PF12826_consen 13 EKTAKLLAKHFGSLEALMNASVEELSAIPGIG 44 (64)
T ss_dssp HHHHHHHHHCCSCHHHHCC--HHHHCTSTT--
T ss_pred HHHHHHHHHHcCCHHHHHHcCHHHHhccCCcC
Confidence 45788999999999998766444444444444
No 19
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=20.71 E-value=88 Score=22.76 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 025006 60 PYMSKRTLEVHWGELHRGYVEG 81 (259)
Q Consensus 60 P~iS~~tl~~H~~khh~~YV~~ 81 (259)
|.||.+.+.-||...|...|..
T Consensus 1 Pgls~eeF~~~~~~~H~pl~~~ 22 (95)
T PF07110_consen 1 PGLSPEEFHDYWREVHAPLVKR 22 (95)
T ss_dssp --S-HHHHHHHHHHTHHHHHCC
T ss_pred CCCCHHHHHHHHHHhHHHHHHH
Confidence 7899999999999989876643
Done!