BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025007
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 8/186 (4%)
Query: 62 IYKNGAACGGTCFQVRCKNRALCSRKGTRVIVTDLNHNN--KTDMVLSRRAFRALANKGM 119
I+K+G CG +C++VRCK + CS V +TD+N+ LS +AF +LA G+
Sbjct: 63 IFKDGKGCG-SCYEVRCKEKPECSGNPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGL 121
Query: 120 DNEILKQRAVDVEYIRVPCEYKHHNLAVRVEESSKNPNYLAIKVLYQGGKTEILGVVLSE 179
+++I +DVE+ RV C+Y V E NPNYLA+ V Y +I+ + + +
Sbjct: 122 NDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 181
Query: 180 YGSPVRIDMRRKFGAVWETD--RAPKGPLQFGFPIVQGFDVKWIWAKNPVPADWKIGVTY 237
S M+ +GA+W D +A KGP G K + AK+ +PA+W+ Y
Sbjct: 182 KLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESG---KKVIAKDVIPANWRPDAVY 238
Query: 238 DAGVQI 243
+ VQ
Sbjct: 239 TSNVQF 244
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 8/182 (4%)
Query: 62 IYKNGAACGGTCFQVRCKNRALCSRKGTRVIVTDLNHNN--KTDMVLSRRAFRALANKGM 119
I+K+G CG +CF+++C CS + V +TD N LS AF A+A KG
Sbjct: 63 IFKSGRGCG-SCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGD 121
Query: 120 DNEILKQRAVDVEYIRVPCEYKHHNLAVRVEESSKNPNYLAIKVLYQGGKTEILGVVLSE 179
+ ++ +++++ RV C+Y E NPNYLA+ V Y G +++ V + E
Sbjct: 122 EQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKE 181
Query: 180 YGSPVRIDMRRKFGAVWETDRAPK--GPLQFGFPIVQGFDVKWIWAKNPVPADWKIGVTY 237
G I+++ +GA+W D K GP + G + A++ +P WK +Y
Sbjct: 182 KGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTE---AEDVIPEGWKADTSY 238
Query: 238 DA 239
++
Sbjct: 239 ES 240
>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The
Solution Structure Of Phl Pii From Timothy Grass Pollen,
Nmr, 38 Structures
pdb|1WHO|A Chain A, Allergen Phl P 2
pdb|1WHP|A Chain A, Allergen Phl P 2
pdb|2VXQ|A Chain A, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 96
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 151 ESSKNPNYLAIKVLYQGGKTEILGVVLSEYGSPVRIDMRRKFGAVW--ETDRAPKGPLQF 208
E N +LA+ V Y+G + V L E+GS + M + G VW +++ +GP F
Sbjct: 9 EKGSNEKHLAVLVKYEGDT--MAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNF 66
Query: 209 GFPIVQG----FDVKWIWAKNPVPADWKIGVTY 237
F +G FD + VP + IG TY
Sbjct: 67 RFLTEKGMKNVFD-------DVVPEKYTIGATY 92
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 206 LQFGFPIVQGFDVKWIWAKNPVPADWK-IGVTYDA 239
L+ GF +VQ DV + A NPVP W + TYDA
Sbjct: 459 LEGGFAVVQAEDVPDVKATNPVPQAWSDLCPTYDA 493
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 206 LQFGFPIVQGFDVKWIWAKNPVPADWK-IGVTYDA 239
L+ GF +VQ DV + A NPVP W + TYDA
Sbjct: 459 LEGGFAVVQAEDVPDVKATNPVPQAWSDLCPTYDA 493
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 206 LQFGFPIVQGFDVKWIWAKNPVPADWK-IGVTYDA 239
L+ GF +V D+ + A NPVP W + TYDA
Sbjct: 456 LEAGFAVVMAEDIPEVAATNPVPQAWSDLCPTYDA 490
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 206 LQFGFPIVQGFDVKWIWAKNPVPADWK-IGVTYDA 239
L+ GF +V D+ + A NPVP W + TYDA
Sbjct: 456 LEAGFAVVMAEDIPDVAATNPVPQAWSDLCPTYDA 490
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 206 LQFGFPIVQGFDVKWIWAKNPVPADWK-IGVTYDA 239
L+ GF +V D+ + A NPVP W + TYDA
Sbjct: 456 LEAGFAVVMAEDIPDVAATNPVPQAWSDLCPTYDA 490
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,229,864
Number of Sequences: 62578
Number of extensions: 289714
Number of successful extensions: 521
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 11
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)