Query 025007
Match_columns 259
No_of_seqs 154 out of 983
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:12:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03023 Expansin-like B1; Pro 100.0 3.7E-69 8E-74 479.1 27.3 237 3-244 8-247 (247)
2 PLN00193 expansin-A; Provision 100.0 1.3E-62 2.7E-67 439.2 26.3 209 19-243 27-256 (256)
3 PLN00050 expansin A; Provision 100.0 1.2E-61 2.5E-66 431.4 25.0 208 19-243 22-247 (247)
4 COG4305 Endoglucanase C-termin 100.0 3E-29 6.4E-34 210.2 18.7 194 22-245 30-232 (232)
5 PLN03024 Putative EG45-like do 100.0 1E-28 2.2E-33 199.8 13.6 98 23-135 22-125 (125)
6 PLN00115 pollen allergen group 99.9 5.5E-25 1.2E-29 176.0 11.5 92 143-243 24-118 (118)
7 PF01357 Pollen_allerg_1: Poll 99.9 4.3E-24 9.4E-29 161.2 10.4 81 145-228 1-82 (82)
8 smart00837 DPBB_1 Rare lipopro 99.9 1.6E-22 3.5E-27 154.2 6.9 71 55-133 1-87 (87)
9 PF03330 DPBB_1: Rare lipoprot 99.8 1.1E-18 2.4E-23 130.0 6.4 71 55-133 1-78 (78)
10 PF00967 Barwin: Barwin family 98.9 2.4E-09 5.1E-14 84.7 4.2 63 66-138 57-119 (119)
11 PF07249 Cerato-platanin: Cera 98.2 1.5E-05 3.2E-10 64.2 9.0 69 54-137 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.9 0.00013 2.9E-09 63.7 10.0 95 25-141 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.7 0.00019 4.1E-09 63.8 9.1 57 72-139 121-178 (233)
14 PRK10672 rare lipoprotein A; P 97.2 0.0033 7.2E-08 59.4 10.4 89 24-136 80-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 87.5 0.49 1.1E-05 41.5 2.8 53 55-109 70-123 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 79.5 4.1 9E-05 33.2 5.0 24 167-190 37-61 (131)
17 cd02110 SO_family_Moco_dimer S 74.9 8.3 0.00018 36.0 6.3 50 167-219 233-292 (317)
18 cd02114 bact_SorA_Moco sulfite 58.8 27 0.00058 33.4 6.3 50 168-218 286-343 (367)
19 PF15240 Pro-rich: Proline-ric 55.5 7.4 0.00016 33.6 1.7 25 3-27 4-28 (179)
20 cd02113 bact_SoxC_Moco bacteri 49.3 47 0.001 31.3 6.2 24 167-190 235-258 (326)
21 PLN00177 sulfite oxidase; Prov 48.5 55 0.0012 31.6 6.6 23 167-189 293-315 (393)
22 TIGR02588 conserved hypothetic 46.8 1E+02 0.0022 25.1 6.8 25 155-180 49-73 (122)
23 cd02859 AMPKbeta_GBD_like AMP- 46.2 79 0.0017 23.0 5.8 48 171-224 11-62 (79)
24 cd02111 eukary_SO_Moco molybdo 44.2 75 0.0016 30.3 6.8 24 167-190 273-296 (365)
25 PF04149 DUF397: Domain of unk 35.0 1E+02 0.0022 21.2 4.6 36 72-115 16-51 (56)
26 PF04620 FlaA: Flagellar filam 32.3 1.3E+02 0.0028 26.7 5.9 44 143-189 108-151 (217)
27 cd02861 E_set_proteins_like E 29.8 1.3E+02 0.0029 21.7 4.8 44 173-221 14-60 (82)
28 PF12863 DUF3821: Domain of un 29.5 2.7E+02 0.0059 24.6 7.4 52 101-173 47-98 (209)
29 cd02112 eukary_NR_Moco molybdo 29.0 1.9E+02 0.0042 27.8 6.9 21 170-190 300-320 (386)
30 PRK10301 hypothetical protein; 25.9 99 0.0021 24.8 3.7 26 124-150 96-124 (124)
31 COG2372 CopC Uncharacterized p 25.4 1.1E+02 0.0023 25.1 3.8 28 124-151 97-126 (127)
32 PLN02252 nitrate reductase [NA 25.2 2.3E+02 0.0049 30.5 7.2 24 167-190 369-392 (888)
33 cd02854 Glycogen_branching_enz 22.9 1.7E+02 0.0037 22.3 4.4 48 171-222 15-76 (99)
34 TIGR02934 nifT_nitrog probable 22.9 3.1E+02 0.0066 20.0 5.5 49 159-210 13-64 (67)
35 PF08481 GBS_Bsp-like: GBS Bsp 22.4 3.5E+02 0.0076 20.5 9.4 66 156-222 10-87 (95)
36 PF05927 Penaeidin: Penaeidin; 21.9 28 0.00061 25.4 -0.1 20 1-21 1-20 (73)
37 PF06988 NifT: NifT/FixU prote 21.8 1.1E+02 0.0024 22.0 2.9 36 171-209 25-63 (64)
38 PF10417 1-cysPrx_C: C-termina 21.8 51 0.0011 21.2 1.1 10 226-235 11-20 (40)
39 PF04234 CopC: CopC domain; I 21.8 1.1E+02 0.0023 23.1 3.1 26 124-150 69-97 (97)
No 1
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=3.7e-69 Score=479.08 Aligned_cols=237 Identities=39% Similarity=0.784 Sum_probs=216.3
Q ss_pred hhHHHHHHHhhhhhcCCCCceeeEEEEeCCCCCC--CCcccCCCCCCCCCCCCeEEEeChhhhcCCccCCceEEEEEeCC
Q 025007 3 ILLCFLFFLLSSATACDHCVHQSKVSYFSKTSAL--SKGACGYGSLALGLGSGHIAAAVPSIYKNGAACGGTCFQVRCKN 80 (259)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~g~aT~Y~~~~~~--~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~~C~~V~c~~ 80 (259)
|||+++|++++ +..|+ +|++++|||||++++. ++|||||+++..+.++.++||+| +||++|++|| +||||+|.+
T Consensus 8 ~~~~~~~~~~~-~~~~~-~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CG-aCy~irC~~ 83 (247)
T PLN03023 8 CFLCVIVLLPL-LCKSQ-DFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCG-ACYQVRCKA 83 (247)
T ss_pred HHHHHHHHhhh-hhhcC-CcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhc-ccEEeecCC
Confidence 45555555555 44555 4999999999998754 78999999988888899999998 9999999999 999999999
Q ss_pred CCcccCCCeEEEEccCCCCCCCceeeCHHHHHHHHccCCchhhccCceEEEEEEEEeeecCCceEEEEEecCCCCCceeE
Q 025007 81 RALCSRKGTRVIVTDLNHNNKTDMVLSRRAFRALANKGMDNEILKQRAVDVEYIRVPCEYKHHNLAVRVEESSKNPNYLA 160 (259)
Q Consensus 81 ~~~C~~~~v~V~VtD~Cp~~~~~~DLs~~AF~~ia~~g~~~~l~~~G~v~v~~r~V~C~~~g~ni~~~v~~gS~n~~w~a 160 (259)
+++|++++|+|+|||.||.++.|||||.+||.+||.||++++|++.|+|+|+||||+|.++|++|+|+|+++|.+|+|++
T Consensus 84 ~~~C~~~~v~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~ 163 (247)
T PLN03023 84 PNLCSDDGVNVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLA 163 (247)
T ss_pred CCccCCCCeEEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999984499999
Q ss_pred EEEEeecCCcceEEEEEEECCCCCeEEccccCCcEEEeCCCCCCceEEEEEEEeCCCc-eEEEEccccCCCCCCCeEEec
Q 025007 161 IKVLYQGGKTEILGVVLSEYGSPVRIDMRRKFGAVWETDRAPKGPLQFGFPIVQGFDV-KWIWAKNPVPADWKIGVTYDA 239 (259)
Q Consensus 161 v~v~n~gg~~~I~sVev~~~g~~~W~~m~r~~g~~W~~~~~~~~pl~~Rvt~t~~~~G-~~vv~~~vip~~w~~G~~y~t 239 (259)
++|.|++|.++|++||||+.++..|++|+|+||++|++++++++||+||++++. .+| ++|+++||||++|++|++|++
T Consensus 164 vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~Gp~slrf~v~~-~~g~~~vva~nViPa~Wk~G~TY~s 242 (247)
T PLN03023 164 IVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSG-SAGQTWVQAKNVIPSDWKAGVAYDS 242 (247)
T ss_pred EEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCCceeEEEEEEe-CCCcEEEEECceeCCCCCCCCEEec
Confidence 999999999999999999987789999999999999999899999999998876 566 558999999999999999999
Q ss_pred Ccccc
Q 025007 240 GVQIT 244 (259)
Q Consensus 240 ~~QF~ 244 (259)
.+||+
T Consensus 243 ~vq~~ 247 (247)
T PLN03023 243 NIQLD 247 (247)
T ss_pred ccccC
Confidence 99995
No 2
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=1.3e-62 Score=439.24 Aligned_cols=209 Identities=22% Similarity=0.460 Sum_probs=191.1
Q ss_pred CCCceeeEEEEeCCCCCC--CCcccCCCCCCCCCCCCeEEEeChhhhcCCccCCceEEEEEeC---CCCcccCC-CeEEE
Q 025007 19 DHCVHQSKVSYFSKTSAL--SKGACGYGSLALGLGSGHIAAAVPSIYKNGAACGGTCFQVRCK---NRALCSRK-GTRVI 92 (259)
Q Consensus 19 ~~~~~~g~aT~Y~~~~~~--~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~~C~~V~c~---~~~~C~~~-~v~V~ 92 (259)
+.+|++|+||||+++++. ++|||||+++...+++.++||+|++||++|++|| +||||+|. ++++|.++ +|+|+
T Consensus 27 ~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CG-aCyev~C~~~~~~~~C~~g~sV~Vt 105 (256)
T PLN00193 27 PSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCG-QCYRIMCDYQADSRWCIKGASVTIT 105 (256)
T ss_pred CCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCcccc-CeEEEECCCCCCCccccCCCeEEEE
Confidence 446999999999987653 6899999998888899999999999999999999 99999994 56789654 79999
Q ss_pred EccCCCC--------------CCCceeeCHHHHHHHHccCCchhhccCceEEEEEEEEeeecCCceEEEEEecCCCCCce
Q 025007 93 VTDLNHN--------------NKTDMVLSRRAFRALANKGMDNEILKQRAVDVEYIRVPCEYKHHNLAVRVEESSKNPNY 158 (259)
Q Consensus 93 VtD~Cp~--------------~~~~~DLs~~AF~~ia~~g~~~~l~~~G~v~v~~r~V~C~~~g~ni~~~v~~gS~n~~w 158 (259)
|||+||+ ++.|||||++||.+||. ++.|+|+|+||||+|+++| +|+|++++ |+||
T Consensus 106 ~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVpC~~~G-~i~f~v~g---n~y~ 174 (256)
T PLN00193 106 ATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-GVRFTING---RDYF 174 (256)
T ss_pred EecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEeccccCC-CcEEEEcC---CccE
Confidence 9999996 46899999999999998 6799999999999999998 99999983 6899
Q ss_pred eEEEEEeecCCcceEEEEEEECCCCCeEEccccCCcEEEeCCCCCC-ceEEEEEEEeCCCceEEEEccccCCCCCCCeEE
Q 025007 159 LAIKVLYQGGKTEILGVVLSEYGSPVRIDMRRKFGAVWETDRAPKG-PLQFGFPIVQGFDVKWIWAKNPVPADWKIGVTY 237 (259)
Q Consensus 159 ~av~v~n~gg~~~I~sVev~~~g~~~W~~m~r~~g~~W~~~~~~~~-pl~~Rvt~t~~~~G~~vv~~~vip~~w~~G~~y 237 (259)
++++|.|++|.++|++|||++.+ ..|++|+|+||++|+++.++.+ ||+|||| + .+|+++++.||||++|++|++|
T Consensus 175 ~~vlv~nv~G~gdV~~v~Ik~~~-~~W~~M~R~wGa~W~~~~~l~g~plsfRvt--s-~~G~~~~~~~viPa~W~~G~ty 250 (256)
T PLN00193 175 ELVLISNVGGAGSIQSVSIKGSK-TGWMAMSRNWGANWQSNAYLDGQSLSFKVT--T-TDGQTRFFLNVVPANWGFGQTF 250 (256)
T ss_pred EEEEEEEeCCCccEEEEEEecCC-CCeeECcccccceeEecCCCCCCCEEEEEE--E-cCCeEEEECceeCCCCCCCCeE
Confidence 99999999999999999999865 4899999999999999987655 9999999 4 6799999999999999999999
Q ss_pred ecCccc
Q 025007 238 DAGVQI 243 (259)
Q Consensus 238 ~t~~QF 243 (259)
++.+||
T Consensus 251 ~s~vqf 256 (256)
T PLN00193 251 SSSVQF 256 (256)
T ss_pred ecCccC
Confidence 999998
No 3
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=1.2e-61 Score=431.43 Aligned_cols=208 Identities=24% Similarity=0.477 Sum_probs=190.2
Q ss_pred CCCceeeEEEEeCCCCCC--CCcccCCCCCCCCCCCCeEEEeChhhhcCCccCCceEEEEEeCCC-CcccCCCeEEEEcc
Q 025007 19 DHCVHQSKVSYFSKTSAL--SKGACGYGSLALGLGSGHIAAAVPSIYKNGAACGGTCFQVRCKNR-ALCSRKGTRVIVTD 95 (259)
Q Consensus 19 ~~~~~~g~aT~Y~~~~~~--~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~~C~~V~c~~~-~~C~~~~v~V~VtD 95 (259)
..+|..++|||||++++. ++|||||+++..++++.++||+|+++|++|++|| +||||+|.+. ++|.+++|+|+|||
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CG-aCyeV~C~~~~~~C~~gsV~V~itd 100 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCG-ACFEIKCVNDNIWCLPGSIIITATN 100 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCcccc-ceEEEEcCCCCcccCCCcEEEEEec
Confidence 457999999999987654 6899999998888899999999999999999999 9999999654 57998899999999
Q ss_pred CCCC--------------CCCceeeCHHHHHHHHccCCchhhccCceEEEEEEEEeeecCCceEEEEEecCCCCCceeEE
Q 025007 96 LNHN--------------NKTDMVLSRRAFRALANKGMDNEILKQRAVDVEYIRVPCEYKHHNLAVRVEESSKNPNYLAI 161 (259)
Q Consensus 96 ~Cp~--------------~~~~~DLs~~AF~~ia~~g~~~~l~~~G~v~v~~r~V~C~~~g~ni~~~v~~gS~n~~w~av 161 (259)
+||+ ++.|||||++||.+||. ++.|+|+|+||||+|.++| ||+|+++++ +||+++
T Consensus 101 ~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g~---sy~~~v 169 (247)
T PLN00050 101 FCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTINGH---SYFNLV 169 (247)
T ss_pred CCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcCC---ceeEEE
Confidence 9996 46899999999999998 6799999999999999998 999999864 599999
Q ss_pred EEEeecCCcceEEEEEEECCCCCeEEccccCCcEEEeCCCCCC-ceEEEEEEEeCCCceEEEEccccCCCCCCCeEEecC
Q 025007 162 KVLYQGGKTEILGVVLSEYGSPVRIDMRRKFGAVWETDRAPKG-PLQFGFPIVQGFDVKWIWAKNPVPADWKIGVTYDAG 240 (259)
Q Consensus 162 ~v~n~gg~~~I~sVev~~~g~~~W~~m~r~~g~~W~~~~~~~~-pl~~Rvt~t~~~~G~~vv~~~vip~~w~~G~~y~t~ 240 (259)
+|.|++|.++|++|+|++.+ ..|++|+|+||++|++++++.+ ||+|||| + .+|+++++.||||++|++|++|++.
T Consensus 170 lv~nv~G~gdi~~V~ikg~~-~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt--~-~~G~~~~~~~V~Pa~W~~G~ty~~~ 245 (247)
T PLN00050 170 LITNVGGAGDIVAVSIKGSK-SNWQAMSRNWGQNWQSNSYLNGQALSFKVT--T-SDGRTVISNNAAPSNWAFGQTYTGM 245 (247)
T ss_pred EEEEcCCCccEEEEEEecCC-CCeeECccccCceeEccCCCCCCcEEEEEE--e-cCCcEEEECceeCCCCCCCCeEecC
Confidence 99999999999999999865 4899999999999999887655 9999999 4 6799999999999999999999995
Q ss_pred ccc
Q 025007 241 VQI 243 (259)
Q Consensus 241 ~QF 243 (259)
||
T Consensus 246 -~f 247 (247)
T PLN00050 246 -QF 247 (247)
T ss_pred -cC
Confidence 88
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3e-29 Score=210.23 Aligned_cols=194 Identities=23% Similarity=0.247 Sum_probs=163.0
Q ss_pred ceeeEEEEeCCCCCCCCcccCCCCCCCCCCCCeEEEeChhhhcCC----ccCCceEEEEEeCCCCcccCCCeEEEEccCC
Q 025007 22 VHQSKVSYFSKTSALSKGACGYGSLALGLGSGHIAAAVPSIYKNG----AACGGTCFQVRCKNRALCSRKGTRVIVTDLN 97 (259)
Q Consensus 22 ~~~g~aT~Y~~~~~~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g----~~CG~~C~~V~c~~~~~C~~~~v~V~VtD~C 97 (259)
-+.|.|||-+.++ .+||-.... .+....|.|+|++.-|-| +.-| +.++|. +| .+..+|.|||+-
T Consensus 30 ~f~G~ATyTgsGY--sGGAflLDP---I~sd~eITAlNPaqlNlGGipAAmAG-aYLrVq--GP----KG~TTVYVTDlY 97 (232)
T COG4305 30 LFEGYATYTGSGY--SGGAFLLDP---IPSDMEITALNPAQLNLGGIPAAMAG-AYLRVQ--GP----KGKTTVYVTDLY 97 (232)
T ss_pred ccceeEEEecccc--cCceEEecC---cCCcceeeecCHHHcccCCchhhhcc-ceEEEE--CC----CCceEEEEeccc
Confidence 5689999988765 578875443 345678999999888766 4578 999998 54 345899999999
Q ss_pred CCC-CCceeeCHHHHHHHHccCCchhhccCceEEEEEEEEeeecCCceEEEEEecCCCCCceeEEEEEeecCCcceEEEE
Q 025007 98 HNN-KTDMVLSRRAFRALANKGMDNEILKQRAVDVEYIRVPCEYKHHNLAVRVEESSKNPNYLAIKVLYQGGKTEILGVV 176 (259)
Q Consensus 98 p~~-~~~~DLs~~AF~~ia~~g~~~~l~~~G~v~v~~r~V~C~~~g~ni~~~v~~gS~n~~w~av~v~n~gg~~~I~sVe 176 (259)
|+. ...+|||+.||.+|++ +.+|+|+|+||.|+-+.+| |+.+|+|||| +.||-++||+|| +.+|.++|
T Consensus 98 PegasGaLDLSpNAFakIGn-------m~qGrIpvqWrvv~aPvtG-N~~YRiKeGS-s~WWAAIQVRnH--~yPV~KlE 166 (232)
T COG4305 98 PEGASGALDLSPNAFAKIGN-------MKQGRIPVQWRVVKAPVTG-NFTYRIKEGS-SRWWAAIQVRNH--KYPVMKLE 166 (232)
T ss_pred ccccccccccChHHHhhhcc-------hhcCccceeEEEecccccc-cEEEEEecCC-ccceeeeeeecc--cCceEEEE
Confidence 985 7899999999999999 7899999999999999998 9999999999 899999999977 89999999
Q ss_pred EEECCCCCeEEccccCCcEEEeCCCCCCceEEEEEEEeCCCceEEEEccccCCCCCCC--e--EEecCccccc
Q 025007 177 LSEYGSPVRIDMRRKFGAVWETDRAPKGPLQFGFPIVQGFDVKWIWAKNPVPADWKIG--V--TYDAGVQITD 245 (259)
Q Consensus 177 v~~~g~~~W~~m~r~~g~~W~~~~~~~~pl~~Rvt~t~~~~G~~vv~~~vip~~w~~G--~--~y~t~~QF~~ 245 (259)
+.++ +.|..|.+.+||+|.-.+...+||.+|+| + +.|+.++.. +|.--+.+ + +..+.+||++
T Consensus 167 ~~qd--g~WinlpK~dYNhFVgT~LG~~pL~~RmT--D-IRG~~l~Dt--lP~Lpk~asSKaY~V~G~VQFsE 232 (232)
T COG4305 167 YEQD--GKWINLPKMDYNHFVGTNLGTGPLKVRMT--D-IRGKVLKDT--LPKLPKSASSKAYTVPGHVQFSE 232 (232)
T ss_pred EecC--CeEeeccccccceeeccccCCCceEEEEe--e-cccceeecc--cccccccccCCceeecceeecCC
Confidence 9986 49999999999999888888999999998 6 999998754 33322433 2 3368899975
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=1e-28 Score=199.83 Aligned_cols=98 Identities=30% Similarity=0.525 Sum_probs=86.4
Q ss_pred eeeEEEEeCCCCCCCCcccCCCCCCCCCCCCeEEEeChhhhcCCccCCceEEEEEeCCC-----CcccCCCeEEEEccCC
Q 025007 23 HQSKVSYFSKTSALSKGACGYGSLALGLGSGHIAAAVPSIYKNGAACGGTCFQVRCKNR-----ALCSRKGTRVIVTDLN 97 (259)
Q Consensus 23 ~~g~aT~Y~~~~~~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~~C~~V~c~~~-----~~C~~~~v~V~VtD~C 97 (259)
.+|+||||+++ ..||| |++ ..++.++||+|+.+|++|+.|| +||||+|.++ .+|++++|+|+|+|+|
T Consensus 22 ~~G~AT~Y~~~---~~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG-~c~~V~C~~~~~~~~~~c~gksV~V~VtD~C 93 (125)
T PLN03024 22 TPGIATFYTSY---TPSAC-YRG---TSFGVMIAAASDSLWNNGRVCG-KMFTVKCKGPRNAVPHPCTGKSVTVKIVDHC 93 (125)
T ss_pred cceEEEEeCCC---CCccc-cCC---CCCCCEeEEeCHHHcCCCcccC-ceEEEEECCCCccccccccCCeEEEEEEcCC
Confidence 47999999975 46899 544 2467899999999999999999 9999999765 3799999999999999
Q ss_pred C-CCCCceeeCHHHHHHHHccCCchhhccCceEEEEEEE
Q 025007 98 H-NNKTDMVLSRRAFRALANKGMDNEILKQRAVDVEYIR 135 (259)
Q Consensus 98 p-~~~~~~DLs~~AF~~ia~~g~~~~l~~~G~v~v~~r~ 135 (259)
| .|..|||||++||.+||+ .+.|+|+|+|.+
T Consensus 94 P~~C~~~~DLS~~AF~~iA~-------~~aG~v~V~y~~ 125 (125)
T PLN03024 94 PSGCASTLDLSREAFAQIAN-------PVAGIINIDYIP 125 (125)
T ss_pred CCCCCCceEcCHHHHHHhcC-------ccCCEEEEEEeC
Confidence 9 588899999999999999 468999999974
No 6
>PLN00115 pollen allergen group 3; Provisional
Probab=99.92 E-value=5.5e-25 Score=176.05 Aligned_cols=92 Identities=21% Similarity=0.391 Sum_probs=83.9
Q ss_pred ceEEEEEecCCCCCceeEEEEEeecCCcceEEEEEEECCCCCeE-EccccCCcEEEeCC--CCCCceEEEEEEEeCCCce
Q 025007 143 HNLAVRVEESSKNPNYLAIKVLYQGGKTEILGVVLSEYGSPVRI-DMRRKFGAVWETDR--APKGPLQFGFPIVQGFDVK 219 (259)
Q Consensus 143 ~ni~~~v~~gS~n~~w~av~v~n~gg~~~I~sVev~~~g~~~W~-~m~r~~g~~W~~~~--~~~~pl~~Rvt~t~~~~G~ 219 (259)
.+|+|+|+++| ||+||++++ | ++|.+|||++.++..|+ +|+|+||++|++++ +++|||+||+| + .+|+
T Consensus 24 ~~v~F~V~~gS-np~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t--~-~~G~ 94 (118)
T PLN00115 24 TEVTFKVGKGS-SSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFL--V-KGGG 94 (118)
T ss_pred CceEEEECCCC-CcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEE--E-eCCC
Confidence 59999999999 899998765 3 37999999999888999 99999999999874 67999999999 4 6789
Q ss_pred EEEEccccCCCCCCCeEEecCccc
Q 025007 220 WIWAKNPVPADWKIGVTYDAGVQI 243 (259)
Q Consensus 220 ~vv~~~vip~~w~~G~~y~t~~QF 243 (259)
+++++||||++|++|++|++++||
T Consensus 95 ~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 95 YRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred EEEECceECCCCCCCCEEeccccC
Confidence 999999999999999999999997
No 7
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.91 E-value=4.3e-24 Score=161.25 Aligned_cols=81 Identities=38% Similarity=0.625 Sum_probs=68.3
Q ss_pred EEEEEecCCCCCceeEEEEEeecCCcceEEEEEEECCCCCeEEccccCCcEEEeC-CCCCCceEEEEEEEeCCCceEEEE
Q 025007 145 LAVRVEESSKNPNYLAIKVLYQGGKTEILGVVLSEYGSPVRIDMRRKFGAVWETD-RAPKGPLQFGFPIVQGFDVKWIWA 223 (259)
Q Consensus 145 i~~~v~~gS~n~~w~av~v~n~gg~~~I~sVev~~~g~~~W~~m~r~~g~~W~~~-~~~~~pl~~Rvt~t~~~~G~~vv~ 223 (259)
|+|+|+++| |+|||+++|.|++|.++|++|||++.++..|++|+|+||++|+++ +++++||+|||| +..+|+++++
T Consensus 1 v~f~V~~gS-~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~pls~Rvt--s~~~G~~vv~ 77 (82)
T PF01357_consen 1 VRFTVKGGS-NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGGPLSFRVT--SGDSGQTVVA 77 (82)
T ss_dssp EEEEE-TT--BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--SSEEEEEE--ETTTSEEEEE
T ss_pred CEEEECCCC-CCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCCCEEEEEE--EcCCCeEEEE
Confidence 689999999 999999999999999999999999999889999999999999998 788999999998 4244999999
Q ss_pred ccccC
Q 025007 224 KNPVP 228 (259)
Q Consensus 224 ~~vip 228 (259)
+||||
T Consensus 78 ~nViP 82 (82)
T PF01357_consen 78 DNVIP 82 (82)
T ss_dssp EEEE-
T ss_pred ecccC
Confidence 99998
No 8
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.87 E-value=1.6e-22 Score=154.22 Aligned_cols=71 Identities=30% Similarity=0.598 Sum_probs=64.0
Q ss_pred EEEeChhhhcCCccCCceEEEEEeC-CCCcccCC-CeEEEEccCCCC--------------CCCceeeCHHHHHHHHccC
Q 025007 55 IAAAVPSIYKNGAACGGTCFQVRCK-NRALCSRK-GTRVIVTDLNHN--------------NKTDMVLSRRAFRALANKG 118 (259)
Q Consensus 55 ~aA~s~~~~~~g~~CG~~C~~V~c~-~~~~C~~~-~v~V~VtD~Cp~--------------~~~~~DLs~~AF~~ia~~g 118 (259)
+||+|++||++|++|| +||||+|. +++.|.++ +|+|+|||+||+ ++.|||||++||.+||+
T Consensus 1 taA~s~~lf~~G~~CG-~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~-- 77 (87)
T smart00837 1 TAALSTALFNNGASCG-ACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ-- 77 (87)
T ss_pred CcccCHHHccCCcccc-ceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh--
Confidence 4899999999999999 99999996 56679874 899999999996 26899999999999999
Q ss_pred CchhhccCceEEEEE
Q 025007 119 MDNEILKQRAVDVEY 133 (259)
Q Consensus 119 ~~~~l~~~G~v~v~~ 133 (259)
++.|+|+|+|
T Consensus 78 -----~~~Gvi~v~y 87 (87)
T smart00837 78 -----YKAGIVPVKY 87 (87)
T ss_pred -----hcCCEEeeEC
Confidence 5799999987
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.76 E-value=1.1e-18 Score=130.04 Aligned_cols=71 Identities=38% Similarity=0.620 Sum_probs=60.0
Q ss_pred EEEeChhhhcCCccCCceEEEEEeC--CCCc--ccC--CCeEEEEccCCCCC-CCceeeCHHHHHHHHccCCchhhccCc
Q 025007 55 IAAAVPSIYKNGAACGGTCFQVRCK--NRAL--CSR--KGTRVIVTDLNHNN-KTDMVLSRRAFRALANKGMDNEILKQR 127 (259)
Q Consensus 55 ~aA~s~~~~~~g~~CG~~C~~V~c~--~~~~--C~~--~~v~V~VtD~Cp~~-~~~~DLs~~AF~~ia~~g~~~~l~~~G 127 (259)
+||++..+|++|.+|| +||+++|. .+.. |.. ++|+|+|+|+||++ ..|||||+.||++|+. ++.|
T Consensus 1 t~a~~~~~y~~g~~cG-~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~-------~~~G 72 (78)
T PF03330_consen 1 TAAGSATWYDNGTACG-QCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALAD-------PDAG 72 (78)
T ss_dssp EEEE-HHHHGGGTTTT--EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBS-------TTCS
T ss_pred CeEEEhhhcCCCCcCC-CeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCC-------CCce
Confidence 5899999999999999 99999993 2333 776 89999999999985 6899999999999998 5799
Q ss_pred eEEEEE
Q 025007 128 AVDVEY 133 (259)
Q Consensus 128 ~v~v~~ 133 (259)
+++|+|
T Consensus 73 ~i~V~w 78 (78)
T PF03330_consen 73 VIPVEW 78 (78)
T ss_dssp SEEEEE
T ss_pred EEEEEC
Confidence 999999
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.85 E-value=2.4e-09 Score=84.72 Aligned_cols=63 Identities=24% Similarity=0.440 Sum_probs=45.4
Q ss_pred CccCCceEEEEEeCCCCcccCCCeEEEEccCCCCCCCceeeCHHHHHHHHccCCchhhccCceEEEEEEEEee
Q 025007 66 GAACGGTCFQVRCKNRALCSRKGTRVIVTDLNHNNKTDMVLSRRAFRALANKGMDNEILKQRAVDVEYIRVPC 138 (259)
Q Consensus 66 g~~CG~~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~~~~DLs~~AF~~ia~~g~~~~l~~~G~v~v~~r~V~C 138 (259)
-..|| +|++|+-+. ++.+++|+|+|+|+.+ +|||.+.+|.+|-..|++ ...|.+.|.|++|+|
T Consensus 57 q~~CG-kClrVTNt~----tga~~~~RIVDqCsnG--GLDld~~vF~~iDtdG~G---~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 57 QDSCG-KCLRVTNTA----TGAQVTVRIVDQCSNG--GLDLDPTVFNQIDTDGQG---YAQGHLIVDYEFVDC 119 (119)
T ss_dssp GGGTT--EEEEE-TT----T--EEEEEEEEE-SSS--SEES-SSSHHHH-SSSHH---HHHTEEEEEEEEE--
T ss_pred ccccc-ceEEEEecC----CCcEEEEEEEEcCCCC--CcccChhHHhhhccCCcc---cccceEEEEEEEEcC
Confidence 36799 999999543 3567999999999988 999999999999754422 468999999999998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.16 E-value=1.5e-05 Score=64.24 Aligned_cols=69 Identities=25% Similarity=0.399 Sum_probs=48.5
Q ss_pred eEEEeChh-hhcCCccCCceEEEEEeCCCCcccCCCeEEEEccCCCCCCCceeeCHHHHHHHHccCCchhhccCceEEEE
Q 025007 54 HIAAAVPS-IYKNGAACGGTCFQVRCKNRALCSRKGTRVIVTDLNHNNKTDMVLSRRAFRALANKGMDNEILKQRAVDVE 132 (259)
Q Consensus 54 ~~aA~s~~-~~~~g~~CG~~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~~~~DLs~~AF~~ia~~g~~~~l~~~G~v~v~ 132 (259)
+|.+.... -| |...|| .|+|++-. ++++.|..+|.-+ ..|+|+.+||+.|.+. ++ ...|+|+++
T Consensus 44 ~IGg~~~V~gW-nS~~CG-tC~~lty~------g~si~vlaID~a~---~gfnis~~A~n~LT~g-~a---~~lG~V~a~ 108 (119)
T PF07249_consen 44 YIGGAPAVAGW-NSPNCG-TCWKLTYN------GRSIYVLAIDHAG---GGFNISLDAMNDLTNG-QA---VELGRVDAT 108 (119)
T ss_dssp SEEEETT--ST-T-TTTT--EEEEEET------TEEEEEEEEEE-S---SSEEE-HHHHHHHHTS--C---CCC-EEE-E
T ss_pred eeccccccccC-CCCCCC-CeEEEEEC------CeEEEEEEEecCC---CcccchHHHHHHhcCC-cc---cceeEEEEE
Confidence 57777654 46 558899 99999963 5789999999854 3599999999999872 22 356999999
Q ss_pred EEEEe
Q 025007 133 YIRVP 137 (259)
Q Consensus 133 ~r~V~ 137 (259)
|++|+
T Consensus 109 ~~qV~ 113 (119)
T PF07249_consen 109 YTQVD 113 (119)
T ss_dssp EEEE-
T ss_pred EEEcC
Confidence 99997
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.85 E-value=0.00013 Score=63.73 Aligned_cols=95 Identities=16% Similarity=0.063 Sum_probs=68.3
Q ss_pred eEEEEeCCCCCCCCcccCCCCCCCCCCCCeEEEeChhhhcCCccCCceEEEEEeCCCCcccCCCeEEEEccCCCC-CCCc
Q 025007 25 SKVSYFSKTSALSKGACGYGSLALGLGSGHIAAAVPSIYKNGAACGGTCFQVRCKNRALCSRKGTRVIVTDLNHN-NKTD 103 (259)
Q Consensus 25 g~aT~Y~~~~~~~~GaCGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~~C~~V~c~~~~~C~~~~v~V~VtD~Cp~-~~~~ 103 (259)
|.|+|||..-.....|.|-.-. ...++||-.+ | ..| ...+|+... ++++|+|+|.|++|. ...-
T Consensus 1 G~ASwYg~~f~G~~TAnGe~y~----~~~~tAAHkt-L-----Plg-T~V~VtNl~----ngrsviVrVnDRGPf~~gRi 65 (208)
T TIGR00413 1 GLASWYGPKFHGRKTANGEVYN----MKALTAAHKT-L-----PFN-TYVKVTNLH----NNRSVIVRINDRGPFSDDRI 65 (208)
T ss_pred CEEeEeCCCCCCCcCCCCeecC----CCcccccccc-C-----CCC-CEEEEEECC----CCCEEEEEEeCCCCCCCCCE
Confidence 6899999742112344443210 1124555432 2 577 989999654 368899999999997 5679
Q ss_pred eeeCHHHHHHHHccCCchhhccCceEEEEEEEEeeecC
Q 025007 104 MVLSRRAFRALANKGMDNEILKQRAVDVEYIRVPCEYK 141 (259)
Q Consensus 104 ~DLs~~AF~~ia~~g~~~~l~~~G~v~v~~r~V~C~~~ 141 (259)
+|||+.|+.+|+- ...|+.+|+.+.+.....
T Consensus 66 IDLS~aAA~~Lg~-------~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 66 IDLSHAAAREIGL-------ISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred EECCHHHHHHcCC-------CcCceEEEEEEEEecCCC
Confidence 9999999999987 578999999999987654
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=0.00019 Score=63.83 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=49.3
Q ss_pred eEEEEEeCCCCcccCCCeEEEEccCCCC-CCCceeeCHHHHHHHHccCCchhhccCceEEEEEEEEeee
Q 025007 72 TCFQVRCKNRALCSRKGTRVIVTDLNHN-NKTDMVLSRRAFRALANKGMDNEILKQRAVDVEYIRVPCE 139 (259)
Q Consensus 72 ~C~~V~c~~~~~C~~~~v~V~VtD~Cp~-~~~~~DLs~~AF~~ia~~g~~~~l~~~G~v~v~~r~V~C~ 139 (259)
.-.+|+-.+ ++++|+|+|.|++|- ....||||..|+++|+- .+.|+.+|+.+++.+.
T Consensus 121 t~v~VtNl~----NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l~~-------~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 121 TYVRVTNLD----NGRSVVVRINDRGPFVSGRIIDLSKAAADKLGM-------IRSGVAKVRIEVLGVA 178 (233)
T ss_pred CEEEEEEcc----CCcEEEEEEeCCCCCCCCcEeEcCHHHHHHhCC-------ccCceEEEEEEEeccc
Confidence 678898665 378999999999997 56799999999999997 5789999999999876
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.17 E-value=0.0033 Score=59.39 Aligned_cols=89 Identities=17% Similarity=0.066 Sum_probs=60.6
Q ss_pred eeEEEEeCCCCCCCCcccCCCCCCCCCCC--CeEEEeChhhhcCCccCCceEEEEEeCCCCcccCCCeEEEEccCCCC-C
Q 025007 24 QSKVSYFSKTSALSKGACGYGSLALGLGS--GHIAAAVPSIYKNGAACGGTCFQVRCKNRALCSRKGTRVIVTDLNHN-N 100 (259)
Q Consensus 24 ~g~aT~Y~~~~~~~~GaCGyg~~~~~~~~--~~~aA~s~~~~~~g~~CG~~C~~V~c~~~~~C~~~~v~V~VtD~Cp~-~ 100 (259)
.|.|+|||........|-|- .|. .++||-.+- .-| ...+|+... ++++|+|+|.|++|. .
T Consensus 80 ~G~ASwYg~~f~G~~TA~Ge------~~~~~~~tAAH~tL------Plp-s~vrVtNl~----ngrsvvVrVnDRGP~~~ 142 (361)
T PRK10672 80 AGLAAIYDAEAGSNLTASGE------RFDPNALTAAHPTL------PIP-SYVRVTNLA----NGRMIVVRINDRGPYGP 142 (361)
T ss_pred EEEEEEeCCccCCCcCcCce------eecCCcCeeeccCC------CCC-CEEEEEECC----CCcEEEEEEeCCCCCCC
Confidence 58888888742101122221 222 245554332 356 889999655 478999999999997 5
Q ss_pred CCceeeCHHHHHHHHccCCchhhccCceEEEEEEEE
Q 025007 101 KTDMVLSRRAFRALANKGMDNEILKQRAVDVEYIRV 136 (259)
Q Consensus 101 ~~~~DLs~~AF~~ia~~g~~~~l~~~G~v~v~~r~V 136 (259)
..-||||..|+++|+- ...+.|.|+.-.|
T Consensus 143 gRiiDLS~aAA~~Lg~-------~~~~~V~ve~i~v 171 (361)
T PRK10672 143 GRVIDLSRAAADRLNT-------SNNTKVRIDPIIV 171 (361)
T ss_pred CCeeEcCHHHHHHhCC-------CCCceEEEEEEee
Confidence 6799999999999987 3457778877766
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=87.47 E-value=0.49 Score=41.45 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=31.5
Q ss_pred EEEeChhhhcCCccCCceEEEEEeCCCCcccCCCeEEEEccCCCC-CCCceeeCHH
Q 025007 55 IAAAVPSIYKNGAACGGTCFQVRCKNRALCSRKGTRVIVTDLNHN-NKTDMVLSRR 109 (259)
Q Consensus 55 ~aA~s~~~~~~g~~CG~~C~~V~c~~~~~C~~~~v~V~VtD~Cp~-~~~~~DLs~~ 109 (259)
+||.+-.-......|+ +|||++=++. .-.+|...|+||+.--+ ..+||||.-+
T Consensus 70 faA~~~~G~~e~~~Cc-~Cy~LtFt~g-~l~GKkmiVQ~tNtG~dlg~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCC-ACYELTFTSG-PLKGKKMIVQVTNTGGDLGSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT--EEEEEE-SS-TTTT-EEEEEEEEE-TTTTTTEEEEE-T
T ss_pred eeeeeecCCCCCCccc-ceEEEEEcCC-CcCCCEeEEEecccCCCCCCCeEEEEeC
Confidence 5666522111226799 9999997652 23467889999988765 6789998654
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=79.47 E-value=4.1 Score=33.15 Aligned_cols=24 Identities=21% Similarity=0.154 Sum_probs=17.2
Q ss_pred cCCc-ceEEEEEEECCCCCeEEccc
Q 025007 167 GGKT-EILGVVLSEYGSPVRIDMRR 190 (259)
Q Consensus 167 gg~~-~I~sVev~~~g~~~W~~m~r 190 (259)
.|.+ +|.+|||+.+++.+|++.+.
T Consensus 37 ~g~g~~I~rVEVS~DgG~tW~~A~l 61 (131)
T PF03404_consen 37 SGGGRGIARVEVSTDGGKTWQEATL 61 (131)
T ss_dssp -STT--EEEEEEESSTTSSEEE-EE
T ss_pred eCCCcceEEEEEEeCCCCCcEEeEe
Confidence 3345 89999999999889986653
No 17
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=74.90 E-value=8.3 Score=35.97 Aligned_cols=50 Identities=24% Similarity=0.205 Sum_probs=31.1
Q ss_pred cCCcceEEEEEEECCCCCeEEccccCC-------cEEEeC-CCCCCc--eEEEEEEEeCCCce
Q 025007 167 GGKTEILGVVLSEYGSPVRIDMRRKFG-------AVWETD-RAPKGP--LQFGFPIVQGFDVK 219 (259)
Q Consensus 167 gg~~~I~sVev~~~g~~~W~~m~r~~g-------~~W~~~-~~~~~p--l~~Rvt~t~~~~G~ 219 (259)
+|...|++|||+.+++.+|++..-... -.|+++ .+..+. +.+|.+ + ..|.
T Consensus 233 ~g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~--D-~~g~ 292 (317)
T cd02110 233 SGGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARAT--D-STGN 292 (317)
T ss_pred cCCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEE--C-CCCC
Confidence 344679999999999889987654321 145555 223454 445554 5 5663
No 18
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=58.75 E-value=27 Score=33.37 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCcceEEEEEEECCCCCeEEcc--ccCCc----EEEeC-CC-CCCceEEEEEEEeCCCc
Q 025007 168 GKTEILGVVLSEYGSPVRIDMR--RKFGA----VWETD-RA-PKGPLQFGFPIVQGFDV 218 (259)
Q Consensus 168 g~~~I~sVev~~~g~~~W~~m~--r~~g~----~W~~~-~~-~~~pl~~Rvt~t~~~~G 218 (259)
|...|++|||+.+++.+|++.. ...+. .|++. .+ ..+.+.|.+--++ ..|
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D-~~G 343 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATN-NDG 343 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEc-CCC
Confidence 4468999999999988998654 22222 35554 22 2455544444335 555
No 19
>PF15240 Pro-rich: Proline-rich
Probab=55.55 E-value=7.4 Score=33.58 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=20.3
Q ss_pred hhHHHHHHHhhhhhcCCCCceeeEE
Q 025007 3 ILLCFLFFLLSSATACDHCVHQSKV 27 (259)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~g~a 27 (259)
|||++.||.++||...+.|+.....
T Consensus 4 VLLSvALLALSSAQ~~dEdv~~e~~ 28 (179)
T PF15240_consen 4 VLLSVALLALSSAQSTDEDVSQEES 28 (179)
T ss_pred HHHHHHHHHhhhccccccccccccC
Confidence 7899999999999989888655433
No 20
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=49.31 E-value=47 Score=31.27 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=19.3
Q ss_pred cCCcceEEEEEEECCCCCeEEccc
Q 025007 167 GGKTEILGVVLSEYGSPVRIDMRR 190 (259)
Q Consensus 167 gg~~~I~sVev~~~g~~~W~~m~r 190 (259)
.|.++|.+|||+.+++.+|+...-
T Consensus 235 sG~~~I~rVEVS~DgG~tW~~A~l 258 (326)
T cd02113 235 SGRGRIRRVDVSFDGGRTWQDARL 258 (326)
T ss_pred CCCCCEEEEEEEcCCCCCceECcc
Confidence 345679999999998889986654
No 21
>PLN00177 sulfite oxidase; Provisional
Probab=48.46 E-value=55 Score=31.62 Aligned_cols=23 Identities=26% Similarity=0.318 Sum_probs=18.4
Q ss_pred cCCcceEEEEEEECCCCCeEEcc
Q 025007 167 GGKTEILGVVLSEYGSPVRIDMR 189 (259)
Q Consensus 167 gg~~~I~sVev~~~g~~~W~~m~ 189 (259)
||..+|++|||+.+|+.+|+...
T Consensus 293 ggg~~I~rVEVS~DgG~tW~~A~ 315 (393)
T PLN00177 293 GGGRGIERVDISVDGGKTWVEAS 315 (393)
T ss_pred CCCccEEEEEEEcCCCCCceeee
Confidence 34347999999999988998664
No 22
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=46.75 E-value=1e+02 Score=25.09 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.3
Q ss_pred CCceeEEEEEeecCCcceEEEEEEEC
Q 025007 155 NPNYLAIKVLYQGGKTEILGVVLSEY 180 (259)
Q Consensus 155 n~~w~av~v~n~gg~~~I~sVev~~~ 180 (259)
.+||..|.|.|.|| ...++|+|.+.
T Consensus 49 gqyyVpF~V~N~gg-~TAasV~V~ge 73 (122)
T TIGR02588 49 GQYYVPFAIHNLGG-TTAAAVNIRGE 73 (122)
T ss_pred CEEEEEEEEEeCCC-cEEEEEEEEEE
Confidence 46999999999876 57999999864
No 23
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=46.18 E-value=79 Score=22.99 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=32.6
Q ss_pred ceEEEEEEECCCCCeE---EccccCCcEEEeCC-CCCCceEEEEEEEeCCCceEEEEc
Q 025007 171 EILGVVLSEYGSPVRI---DMRRKFGAVWETDR-APKGPLQFGFPIVQGFDVKWIWAK 224 (259)
Q Consensus 171 ~I~sVev~~~g~~~W~---~m~r~~g~~W~~~~-~~~~pl~~Rvt~t~~~~G~~vv~~ 224 (259)
+-++|+|.++= ..|+ +|.|..+. |+..- .+.+.+.+|+. .||+|+...
T Consensus 11 ~a~~V~v~G~F-~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~----Vdg~w~~d~ 62 (79)
T cd02859 11 GGKEVYVTGSF-DNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFI----VDGEWRHSP 62 (79)
T ss_pred CCcEEEEEEEc-CCCCccccceECCCC-cEEEEEcCCCCEEEEEE----ECCEEEeCC
Confidence 45788888742 3565 58877655 76653 45678888887 568888643
No 24
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=44.18 E-value=75 Score=30.34 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=19.2
Q ss_pred cCCcceEEEEEEECCCCCeEEccc
Q 025007 167 GGKTEILGVVLSEYGSPVRIDMRR 190 (259)
Q Consensus 167 gg~~~I~sVev~~~g~~~W~~m~r 190 (259)
+|...|++|||+.+++.+|+...-
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l 296 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAEL 296 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCc
Confidence 444579999999999889987653
No 25
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=35.01 E-value=1e+02 Score=21.23 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=28.1
Q ss_pred eEEEEEeCCCCcccCCCeEEEEccCCCCCCCceeeCHHHHHHHH
Q 025007 72 TCFQVRCKNRALCSRKGTRVIVTDLNHNNKTDMVLSRRAFRALA 115 (259)
Q Consensus 72 ~C~~V~c~~~~~C~~~~v~V~VtD~Cp~~~~~~DLs~~AF~~ia 115 (259)
.|+||.-. +. .|-|-|.=......|.+++.+|..+-
T Consensus 16 ~CVEva~~------~~--~v~vRDSk~p~~~~L~~t~~eW~aFl 51 (56)
T PF04149_consen 16 NCVEVARL------PG--GVAVRDSKDPDGPVLTFTPAEWAAFL 51 (56)
T ss_pred CcEEEEee------cc--eEEEecCCCCCCCEEEeCHHHHHHHH
Confidence 89999742 22 38888887667889999999998774
No 26
>PF04620 FlaA: Flagellar filament outer layer protein Flaa; InterPro: IPR006714 Periplasmic flagella are the organelles of spirochete mobility, and are structurally different from the flagella of other motile bacteria. They reside inside the cell within the periplasmic space, and confer mobility in viscous gel-like media such as connective tissue []. The flagella are composed of an outer sheath of FlaA proteins and a core filament of FlaB proteins. Each species usually has several FlaA protein species [].; GO: 0001539 ciliary or flagellar motility, 0030288 outer membrane-bounded periplasmic space
Probab=32.29 E-value=1.3e+02 Score=26.73 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=33.7
Q ss_pred ceEEEEEecCCCCCceeEEEEEeecCCcceEEEEEEECCCCCeEEcc
Q 025007 143 HNLAVRVEESSKNPNYLAIKVLYQGGKTEILGVVLSEYGSPVRIDMR 189 (259)
Q Consensus 143 ~ni~~~v~~gS~n~~w~av~v~n~gg~~~I~sVev~~~g~~~W~~m~ 189 (259)
+.|.+.|-... ++|+|.++++.. .+.+..+.+=.-+-..|+.|+
T Consensus 108 k~I~vWV~G~n-~~h~L~v~lrD~--~G~~~~l~~G~L~f~GWK~L~ 151 (217)
T PF04620_consen 108 KSISVWVYGDN-YPHWLEVLLRDA--KGEVHQLPLGSLNFDGWKNLT 151 (217)
T ss_pred EEEEEEEECCC-CCceEEEEEEcC--CCCEEEEEeeeecCCceeEEE
Confidence 47888887654 899999999976 556777777555556899885
No 27
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=29.76 E-value=1.3e+02 Score=21.71 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=28.6
Q ss_pred EEEEEEECCCCCe--EEccccCCcEEEeCC-CCCCceEEEEEEEeCCCceEE
Q 025007 173 LGVVLSEYGSPVR--IDMRRKFGAVWETDR-APKGPLQFGFPIVQGFDVKWI 221 (259)
Q Consensus 173 ~sVev~~~g~~~W--~~m~r~~g~~W~~~~-~~~~pl~~Rvt~t~~~~G~~v 221 (259)
++|+|.++= ..| .+|+|.....|++.- .+.+.+.+|+. .+|++.
T Consensus 14 ~~V~v~G~f-n~W~~~~m~~~~~G~w~~~~~l~~G~y~Ykf~----vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSF-NNWNAIPMEREGDGLWVVTVELRPGRYEYKFV----VDGEWV 60 (82)
T ss_pred CEEEEEeEC-CCCCcccCEECCCCcEEEEEeCCCCcEEEEEE----ECCEEe
Confidence 778888642 356 468887656787653 34566777776 457765
No 28
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=29.54 E-value=2.7e+02 Score=24.58 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=34.4
Q ss_pred CCceeeCHHHHHHHHccCCchhhccCceEEEEEEEEeeecCCceEEEEEecCCCCCceeEEEEEeecCCcceE
Q 025007 101 KTDMVLSRRAFRALANKGMDNEILKQRAVDVEYIRVPCEYKHHNLAVRVEESSKNPNYLAIKVLYQGGKTEIL 173 (259)
Q Consensus 101 ~~~~DLs~~AF~~ia~~g~~~~l~~~G~v~v~~r~V~C~~~g~ni~~~v~~gS~n~~w~av~v~n~gg~~~I~ 173 (259)
+.+|.++|.+|..= .|. |..-+=...+ .+.|.|++-| ++|.|.+..-..+|.
T Consensus 47 p~~FyV~P~~f~~~-----------tG~----WY~~~~~~~~-~~aF~V~~Ps-----l~l~v~d~~t~~dvt 98 (209)
T PF12863_consen 47 PTNFYVSPAAFGGK-----------TGN----WYQWNGTPKG-DVAFYVQDPS-----LSLKVWDANTDKDVT 98 (209)
T ss_pred CcCEEEChHHhCCc-----------ccc----eEecCCCCCc-ceEEEEeCCc-----eEEEEEecccccccc
Confidence 77999999999752 232 3332222233 8999999887 889998765444443
No 29
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=28.96 E-value=1.9e+02 Score=27.82 Aligned_cols=21 Identities=10% Similarity=-0.175 Sum_probs=17.7
Q ss_pred cceEEEEEEECCCCCeEEccc
Q 025007 170 TEILGVVLSEYGSPVRIDMRR 190 (259)
Q Consensus 170 ~~I~sVev~~~g~~~W~~m~r 190 (259)
.+|++|||+.+|+.+|+...-
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~L 320 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLASI 320 (386)
T ss_pred CcEEEEEEEcCCCCCceeCCC
Confidence 379999999999889986643
No 30
>PRK10301 hypothetical protein; Provisional
Probab=25.86 E-value=99 Score=24.80 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=19.3
Q ss_pred ccCceEEEEEEEEeeec---CCceEEEEEe
Q 025007 124 LKQRAVDVEYIRVPCEY---KHHNLAVRVE 150 (259)
Q Consensus 124 ~~~G~v~v~~r~V~C~~---~g~ni~~~v~ 150 (259)
+..|.+.|+||-|+=+- .| .+.|.|+
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G-~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKG-HYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCC-eEEEEEC
Confidence 56899999999999653 34 6666654
No 31
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=25.40 E-value=1.1e+02 Score=25.14 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=22.1
Q ss_pred ccCceEEEEEEEEeeec--CCceEEEEEec
Q 025007 124 LKQRAVDVEYIRVPCEY--KHHNLAVRVEE 151 (259)
Q Consensus 124 ~~~G~v~v~~r~V~C~~--~g~ni~~~v~~ 151 (259)
+..|.+.++||.|+=+- .++.+.|.|+.
T Consensus 97 L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~~ 126 (127)
T COG2372 97 LKAGVYTVDWRVVSSDGHVVKGSISFSVGA 126 (127)
T ss_pred CCCCcEEEEEEEEecCCcEeccEEEEEecC
Confidence 78999999999999863 22388888764
No 32
>PLN02252 nitrate reductase [NADPH]
Probab=25.23 E-value=2.3e+02 Score=30.50 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=19.5
Q ss_pred cCCcceEEEEEEECCCCCeEEccc
Q 025007 167 GGKTEILGVVLSEYGSPVRIDMRR 190 (259)
Q Consensus 167 gg~~~I~sVev~~~g~~~W~~m~r 190 (259)
||...|++|||+.+++.+|+....
T Consensus 369 ggg~~I~rVEVS~DgG~tW~~a~l 392 (888)
T PLN02252 369 GGGRKVTRVEVSLDGGETWRLCDL 392 (888)
T ss_pred CCCCceEEEEEEcCCCCcceeCcc
Confidence 444579999999999889987654
No 33
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=22.91 E-value=1.7e+02 Score=22.34 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=30.4
Q ss_pred ceEEEEEEECCCCCeE----EccccCCcEEEeCCC---------CC-CceEEEEEEEeCCCceEEE
Q 025007 171 EILGVVLSEYGSPVRI----DMRRKFGAVWETDRA---------PK-GPLQFGFPIVQGFDVKWIW 222 (259)
Q Consensus 171 ~I~sVev~~~g~~~W~----~m~r~~g~~W~~~~~---------~~-~pl~~Rvt~t~~~~G~~vv 222 (259)
.-++|+|.++- ..|. +|.|...-+|++.-+ .. ..+++||+ . .+|+++.
T Consensus 15 ~A~~V~l~GdF-n~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~--~-~~G~~~~ 76 (99)
T cd02854 15 NAEEVYLIGDF-NNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMV--T-PSGEWID 76 (99)
T ss_pred CCCEEEEEccC-CCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEE--e-CCCCEEE
Confidence 34567777532 3564 588877778976522 23 47899998 3 5687754
No 34
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=22.87 E-value=3.1e+02 Score=19.96 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=27.9
Q ss_pred eEEEEEeecCCcceEEEEEEECCCCCeEEccccCCcEEEeCC---CCCCceEEEE
Q 025007 159 LAIKVLYQGGKTEILGVVLSEYGSPVRIDMRRKFGAVWETDR---APKGPLQFGF 210 (259)
Q Consensus 159 ~av~v~n~gg~~~I~sVev~~~g~~~W~~m~r~~g~~W~~~~---~~~~pl~~Rv 210 (259)
+.+.|.--.-..+|.++| +....+.|..|.+.| .+.++. .+.-|++||.
T Consensus 13 l~~YvpKKDLEE~Vv~~e-~~~~WGG~v~L~NGw--~l~lp~l~~~~~LPiTveA 64 (67)
T TIGR02934 13 LSAYVPKKDLEEVIVSVE-KEELWGGWVTLANGW--RLELPEIPDDTRLPITVEA 64 (67)
T ss_pred EEEEEECCcchhheeeee-cCccccCEEEECCcc--EEEeCCCCCCCCCCEEEEE
Confidence 444454333346788888 443446788886653 455543 2345777765
No 35
>PF08481 GBS_Bsp-like: GBS Bsp-like repeat; InterPro: IPR013688 This repeat is found in a number of Streptococcus proteins including some hypothetical proteins and Bsp. Bsp is a protein of group B Streptococcus (GBS) which might control cell morphology [].
Probab=22.44 E-value=3.5e+02 Score=20.48 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=43.6
Q ss_pred CceeEEEEEeecCCcceEEEEEEE---CC-C--CCeEEccccCCcEEEeC----C--CCCCceEEEEEEEeCCCceEEE
Q 025007 156 PNYLAIKVLYQGGKTEILGVVLSE---YG-S--PVRIDMRRKFGAVWETD----R--APKGPLQFGFPIVQGFDVKWIW 222 (259)
Q Consensus 156 ~~w~av~v~n~gg~~~I~sVev~~---~g-~--~~W~~m~r~~g~~W~~~----~--~~~~pl~~Rvt~t~~~~G~~vv 222 (259)
..-|.+.+.|+.....|++|++.- .+ . -.|....+.....|+.. + ...|.+.+-+..+. .+|+.+-
T Consensus 10 ~g~~~v~v~~~~~~~~i~~V~~aVWSe~nGQdDL~WY~a~k~~dg~y~~~i~~~nH~~~~G~Y~vhvY~~~-~~G~~~~ 87 (95)
T PF08481_consen 10 NGTFTVTVTNVSSPKGIKSVKFAVWSEENGQDDLKWYTATKQSDGSYSVTIDLSNHKNETGTYHVHVYITD-ADGKMIG 87 (95)
T ss_pred CCeEEEEEEeccCCCCeeEEEEEEEcCCCCCCccEEEEeeecCCCcEEEEEeHHHCCCCccEEEEEEEEEc-CCCcEEE
Confidence 455788999887777899888852 22 2 26988866555556554 1 23477777777545 7786654
No 36
>PF05927 Penaeidin: Penaeidin; InterPro: IPR009226 This family consists of several isoforms of the penaeidin protein, which is specific to shrimps. Penaeidins, a unique family of antimicrobial peptides (AMPs) with both proline and cysteine-rich domains, were initially identified in the hemolymph of the Pacific white shrimp, Penaeus vannamei [].; GO: 0008061 chitin binding, 0005737 cytoplasm; PDB: 1UEO_A 1XV3_A.
Probab=21.94 E-value=28 Score=25.38 Aligned_cols=20 Identities=40% Similarity=0.745 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHhhhhhcCCCC
Q 025007 1 MAILLCFLFFLLSSATACDHC 21 (259)
Q Consensus 1 ~~~l~~~~~~~~~~~~~~~~~ 21 (259)
|+|++| |.++.+.|..|.+.
T Consensus 1 MRLVVC-LVFLaSFALVCQG~ 20 (73)
T PF05927_consen 1 MRLVVC-LVFLASFALVCQGQ 20 (73)
T ss_dssp ---------------------
T ss_pred CeEEEe-hHHHHHHHHhccCc
Confidence 899999 45556667888655
No 37
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=21.84 E-value=1.1e+02 Score=22.04 Aligned_cols=36 Identities=3% Similarity=-0.026 Sum_probs=16.0
Q ss_pred ceEEEEEEECCCCCeEEccccCCcEEEeCC---CCCCceEEE
Q 025007 171 EILGVVLSEYGSPVRIDMRRKFGAVWETDR---APKGPLQFG 209 (259)
Q Consensus 171 ~I~sVev~~~g~~~W~~m~r~~g~~W~~~~---~~~~pl~~R 209 (259)
+|.++| +....+.|..|.+.| .|.++. .++-|++||
T Consensus 25 ~Vv~~E-~~~~wGG~v~L~NGw--~l~lp~~~~~~~lPiTve 63 (64)
T PF06988_consen 25 PVVSME-KPELWGGEVTLANGW--ELYLPPLPADTRLPITVE 63 (64)
T ss_dssp EEEEES-SSSS-SSEEEETTS---EEE----SSS-SS-EEE-
T ss_pred ceeeee-ccCccCCEEEECCcC--EEEeCCCCCCCCCCeEee
Confidence 455554 333445778886654 566553 234576665
No 38
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=21.80 E-value=51 Score=21.23 Aligned_cols=10 Identities=50% Similarity=1.032 Sum_probs=8.9
Q ss_pred ccCCCCCCCe
Q 025007 226 PVPADWKIGV 235 (259)
Q Consensus 226 vip~~w~~G~ 235 (259)
+.|+||++|.
T Consensus 11 ~tPanW~pGd 20 (40)
T PF10417_consen 11 ATPANWKPGD 20 (40)
T ss_dssp BBCTTTCTTS
T ss_pred ccCcCCCCCC
Confidence 7899999985
No 39
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=21.78 E-value=1.1e+02 Score=23.14 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=16.7
Q ss_pred ccCceEEEEEEEEeeec---CCceEEEEEe
Q 025007 124 LKQRAVDVEYIRVPCEY---KHHNLAVRVE 150 (259)
Q Consensus 124 ~~~G~v~v~~r~V~C~~---~g~ni~~~v~ 150 (259)
+..|.+.|+||-|+=+- .| .+.|.||
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G-~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSG-SFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEE-EEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCC-EEEEEEC
Confidence 56899999999999432 23 5555553
Done!