BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025008
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5EA37|CC130_BOVIN Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130
PE=2 SV=1
Length = 400
Score = 174 bits (440), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 129/211 (61%), Gaps = 8/211 (3%)
Query: 1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
MP+NIWC GC + I GVR+NAEKK+VGNYY+T I+ F MK C + I +QTDP NC+Y
Sbjct: 50 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109
Query: 61 VIISGAQRKTEEFDVEDAETLELPADEERGKLS-DPFYRLEHQEADLQKKKEAEPRLVQI 119
VI+SGAQRK E +D+ED E + E++ KL D +RLEH EAD K+A P L I
Sbjct: 110 VIVSGAQRKEERWDMEDNEQVLTTEHEKKQKLEMDAMFRLEHGEADRSTLKKALPTLSHI 169
Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
Q + DD+ALN LR + R ++K + EEE A K L + L+P T++D A
Sbjct: 170 QEAQSA-WKDDFALNSMLRKRFREKKKAMQEEEERDQALQAKASLAIPLVPETEDDRRLA 228
Query: 176 AHVKFSS--KFEKNRKDKRALINAASIFSGS 204
A +KF + +E +K KR I + S F +
Sbjct: 229 ALLKFHTLDSYEDKQKLKRTEIISRSWFPST 259
>sp|P13994|CC130_HUMAN Coiled-coil domain-containing protein 130 OS=Homo sapiens
GN=CCDC130 PE=1 SV=2
Length = 396
Score = 172 bits (435), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 128/208 (61%), Gaps = 8/208 (3%)
Query: 1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
MP+NIWC GC + I GVR+NAEKK+VGNYY+T I+ F MK C + I +QTDP NC+Y
Sbjct: 50 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109
Query: 61 VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
VI+SGAQRK E +D+ D E + E++ KL +D +RLEH EAD K+A P L I
Sbjct: 110 VIVSGAQRKEERWDMADNEQVLTTEHEKKQKLETDAMFRLEHGEADRSTLKKALPTLSHI 169
Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
Q + DD+ALN LR + R ++K + EEE A K L + L+P T++D A
Sbjct: 170 QEAQSA-WKDDFALNSMLRRRFREKKKAIQEEEERDQALQAKASLTIPLVPETEDDRKLA 228
Query: 176 AHVKFSS--KFEKNRKDKRALINAASIF 201
A +KF + +E +K KR I + S F
Sbjct: 229 ALLKFHTLDSYEDKQKLKRTEIISRSWF 256
>sp|Q32PZ9|CC130_RAT Coiled-coil domain-containing protein 130 OS=Rattus norvegicus
GN=Ccdc130 PE=2 SV=1
Length = 385
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 132/220 (60%), Gaps = 11/220 (5%)
Query: 1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
MP+NIWC GC + I GVR+NAEKK+VGNYY+T I+ F MK C + I +QTDP NC+Y
Sbjct: 50 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109
Query: 61 VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
VI+SGA RK E +D+ED E + E++ KL +D +RLEH EAD K+A P L I
Sbjct: 110 VIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHI 169
Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
Q + + DD+ALN LR R ++K + EEE A K L + L+P +++D A
Sbjct: 170 QEAQNA-WKDDFALNSMLRRHFREKKKAMQEEEEKDQALQAKANLAIPLVPESEDDRRLA 228
Query: 176 AHVKFSS--KFEKNRKDKRALINAASIFS---GSSISSSK 210
A ++ + +E ++ KR I S F G S SSSK
Sbjct: 229 ALLRLHTLDSYEDKQRMKRTEIIHRSWFPSAQGPSTSSSK 268
>sp|Q9D516|CC130_MOUSE Coiled-coil domain-containing protein 130 OS=Mus musculus
GN=Ccdc130 PE=2 SV=1
Length = 385
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 126/208 (60%), Gaps = 8/208 (3%)
Query: 1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
MP+NIWC GC + I GVR+NAEKK+VGNYY+T I+ F MK C + I +QTDP NC+Y
Sbjct: 50 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDY 109
Query: 61 VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
VI+SGA RK E +D+ED E + E++ KL +D +RLEH EAD K+A P L I
Sbjct: 110 VIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHI 169
Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
Q + + DD+ALN LR R ++K + EEE A K L + L+P +++D A
Sbjct: 170 QEAQNA-WKDDFALNSMLRRHFREKKKAMQEEEEKDQALQAKASLAIPLVPESEDDRRLA 228
Query: 176 AHVKFSS--KFEKNRKDKRALINAASIF 201
A ++ + +E ++ KR I S F
Sbjct: 229 ALLRLHTLDSYEDKQRMKRTEIIHRSWF 256
>sp|Q66I85|CC130_DANRE Coiled-coil domain-containing protein 130 homolog OS=Danio rerio
GN=ccdc130 PE=2 SV=1
Length = 390
Score = 164 bits (416), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 129/209 (61%), Gaps = 8/209 (3%)
Query: 1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
MP+NIWC GC + I GVR+NAEKK+VGNYY+T I+ F MK C + I +QTDP C+Y
Sbjct: 50 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPATCDY 109
Query: 61 VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
VI+SGAQRK E +D+ + E + E+ KL +D Y+L+H D +K + A P L ++
Sbjct: 110 VIVSGAQRKEERWDMAENEQILTTERNEKEKLETDAMYKLDHGGKDKEKLRAAIPSLNEL 169
Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTEEE----AASRKLGLGLRLLPSTKEDACAA 175
Q G + DD+ LN ALR K R+++K + EEE A + GL + L+P +ED A
Sbjct: 170 QEHQSG-WKDDFQLNSALRRKFRTEKKVIAEEEEKDNAVRLRTGLSIPLVPEREEDKKLA 228
Query: 176 AHVKFSS--KFEKNRKDKRALINAASIFS 202
+ + F S +E ++ KR I++ S F+
Sbjct: 229 SLLTFQSPDSYEDKKQWKRQEISSRSWFN 257
>sp|Q6DJK9|CC130_XENLA Coiled-coil domain-containing protein 130 OS=Xenopus laevis
GN=ccdc130 PE=2 SV=1
Length = 384
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/209 (43%), Positives = 133/209 (63%), Gaps = 8/209 (3%)
Query: 1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
MP+NIWC GC + I GVR+NAEKK+VGNYY+T I+ F MK C + I +QTDP +C+Y
Sbjct: 50 MPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPASCDY 109
Query: 61 VIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQI 119
VI+SGAQRK E +D++D E + E++ +L +D +RLEH D K + A P L ++
Sbjct: 110 VIVSGAQRKEERWDMQDNEQILTTEHEQKQRLETDSMFRLEHGVQDKAKLQRAAPSLSEL 169
Query: 120 QRISDGRFSDDYALNKALRAKLRSQRKRVTE----EEAASRKLGLGLRLLPSTKEDACAA 175
Q + + DD+A+N LR+K R ++K++ E ++A K L L+L+P +ED A
Sbjct: 170 QEVQSA-WKDDFAINSLLRSKFREEKKQIKEEEERDQALLTKASLDLKLVPEVEEDKKIA 228
Query: 176 AHVKFSS--KFEKNRKDKRALINAASIFS 202
A +K+ S +E+ +K KR+ I S FS
Sbjct: 229 ALLKYRSLESYEQKQKKKRSEICNRSWFS 257
>sp|Q7K0F0|CC130_DROME Coiled-coil domain-containing protein 130 homolog OS=Drosophila
melanogaster GN=CG15084 PE=2 SV=1
Length = 316
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 12/228 (5%)
Query: 1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
MP+NIWC GC + I GVR+NAEK +VG YY+T ++ F MK C + IQTDP N +Y
Sbjct: 49 MPYNIWCDGCKNHIGMGVRYNAEKTKVGMYYTTPVFKFRMKCHLCDNHFEIQTDPGNLDY 108
Query: 61 VIISGAQRKTEEFDVEDAETLELPADEERGK--LSDPFYRLEHQEADLQKKKEAEPRLVQ 118
VI+SGA+R+ +D E + +P +E K D Y+LEHQ D + +A P L +
Sbjct: 109 VILSGARRQENRWDPLQNEQV-VPETKEVQKRLFDDAMYKLEHQAKDAKAGADARPVLQK 167
Query: 119 IQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKL----GLGLRLLPSTKEDACA 174
+ + + D Y N LRA+ R Q+K + ++ R+L L + LLP T +D
Sbjct: 168 LVERNMSVWDDSYMANSRLRAEFRQQKKEINGQQELDRQLLAKSSLDIALLPETTQDREM 227
Query: 175 AAHVKFSSKFEKNRK-DKRALINAASIFSGSSISSSKQLELEAKRRKI 221
AA +K +K R+ ++R + G+++++ L KR+K+
Sbjct: 228 AALMKLQTKSALERESEQRLELLMRPALPGATVTTFGGL----KRQKV 271
>sp|Q54TR4|CC130_DICDI Coiled-coil domain-containing protein 130 homolog OS=Dictyostelium
discoideum GN=DDB_G0281599 PE=3 SV=1
Length = 325
Score = 127 bits (319), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 22/223 (9%)
Query: 1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
MPF++WC GC I GVRFNAEKK V Y+++ I+SF MK C +Q IQ DPKN +Y
Sbjct: 49 MPFSVWCLGCECHIGMGVRFNAEKKTVDKYFTSNIYSFKMKCHQCSNQFEIQNDPKNTDY 108
Query: 61 VIISGAQRKTEEFDVEDAETLELPAD--------------EERGKLSDPFYRLEHQEADL 106
+ISG +++ E+F+ ED+ ELP+ +D +LE+++ D+
Sbjct: 109 KLISGLKKRIEQFNPEDS---ELPSSFIIKYDDNNNNNNNNNNNDNNDTLLKLENKKLDI 165
Query: 107 QKKKEAEPRLVQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKLGLGLRLLP 166
+K K+ +L ++Q I R +DY L+ +R R ++K E + G+ + LL
Sbjct: 166 EKGKKESTQLEKLQEIMTNRTINDYQLSSIMRKSFREKKKEDQIELERQKSKGIMIPLLK 225
Query: 167 STKEDACAAAHVKFSS-----KFEKNRKDKRALINAASIFSGS 204
++D A + F+S K +++ K KR LI SI +
Sbjct: 226 ENQDDIDTAKDIDFNSNSLKRKLDESNKLKRELIKNESILKST 268
>sp|Q09651|CC130_CAEEL Coiled-coil domain-containing protein 130 homolog OS=Caenorhabditis
elegans GN=ZK1307.9 PE=1 SV=1
Length = 369
Score = 123 bits (308), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 104/180 (57%), Gaps = 13/180 (7%)
Query: 1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
MPFNIWC GC++ + GVR+NAEKK++G YY+T + F MK C + VI+TDPKN +Y
Sbjct: 50 MPFNIWCLGCHNHVGMGVRYNAEKKKIGMYYTTPLHEFRMKCHLCDNYYVIRTDPKNFDY 109
Query: 61 VIISGAQRKTEEFDVEDAETLELPADEERG---KL-SDPFYRLEHQEADLQKKKEAEPRL 116
++ G R+ FD D + +RG KL +D ++ EH+ D K E R+
Sbjct: 110 ELVEGCSRQELRFDPTDIAQI---GAVDRGFTQKLAADAMFKKEHEAEDKDKAATEEGRV 166
Query: 117 VQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAAS----RKLGLG-LRLLPSTKED 171
+++ I + R DD+ N LRA+ R+++K + E A KL +G +LLP T+ED
Sbjct: 167 DKLEWIQE-RMRDDFTANSFLRAQFRNEKKSLNETRARDANLRDKLSIGTTQLLPETEED 225
>sp|O60141|CWC16_SCHPO Protein saf4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=saf4 PE=3 SV=2
Length = 299
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 15/212 (7%)
Query: 1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
MPF +WC C ++I +G RFNA KK++G+YY+TKIWSF++K C + I + TDPKN EY
Sbjct: 32 MPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEY 91
Query: 61 VIISGAQRKTEEFDVEDAETLELPADEERGK--LSDPFYRLEHQEADLQKKKEAEPRLVQ 118
++ SG +RK E D+ E PA E + SD LE Q + +K +
Sbjct: 92 IVASGGRRKIEPQDIN-----ERPAKAENDEKVPSDAIEALETQLTQQKSEKHNSSVINF 146
Query: 119 IQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKL----GLGLRLLPSTKEDACA 174
I ++ +SD + ++ LR + R ++K ++EA L L + +LP + D
Sbjct: 147 IYEKNERLWSDPFVSSQRLRKQFRERKKIEKKQEAKDLSLKNRAALDIDILPPSSSDKDK 206
Query: 175 AAHVKFS----SKFEKNRKDKRALINAASIFS 202
A + + +KF + +R L+ ++ FS
Sbjct: 207 ALLLLDNELGKNKFIRKLDYRRTLMPSSRTFS 238
>sp|Q54WR5|CCD94_DICDI Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium
discoideum GN=ccdc94 PE=3 SV=1
Length = 324
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 1 MPFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNC 58
+P +I C C I +G +FNA+K+ V N Y KI+ F ++ C ++ I+TDPKN
Sbjct: 37 LPMSIRCNTCGEYIGRGTKFNAKKETVQNEDYLGIKIYRFFLRCKKCAAELTIKTDPKNS 96
Query: 59 EYVIISGAQRKTEEFDVEDAE 79
EYV SGA R E + D E
Sbjct: 97 EYVCESGATRNYEPWKETDEE 117
>sp|Q9D6J3|CCD94_MOUSE Coiled-coil domain-containing protein 94 OS=Mus musculus GN=Ccdc94
PE=1 SV=1
Length = 314
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 2 PFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNCE 59
PFN+ C C I KG +FNA K+ V N Y I+ F +K C +I +TDP+N +
Sbjct: 38 PFNMRCKTCGEYIYKGKKFNARKETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTD 97
Query: 60 YVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQI 119
Y + GA R + + + E + + E +L++P LE++ D + + E L +
Sbjct: 98 YTMEHGATRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENRTKDSKLEMEV---LENL 154
Query: 120 QRISD 124
Q + D
Sbjct: 155 QELKD 159
>sp|Q9BW85|CCD94_HUMAN Coiled-coil domain-containing protein 94 OS=Homo sapiens GN=CCDC94
PE=1 SV=1
Length = 323
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 2 PFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNCE 59
PFN+ C C I KG +FNA K+ V N Y I+ F +K C +I +TDP+N +
Sbjct: 38 PFNMRCKTCGEYIYKGKKFNARKETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTD 97
Query: 60 YVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQI 119
Y + GA R + + + E + + E +L++P LE++ D + + E L +
Sbjct: 98 YTMEHGATRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENRTKDSKLEMEV---LENL 154
Query: 120 QRISD 124
Q + D
Sbjct: 155 QELKD 159
>sp|Q9P7C5|CWF16_SCHPO Pre-mRNA-splicing factor cwf16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf16 PE=1 SV=2
Length = 270
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 2 PFNIWCGGCNSMIAKGVRFNAEKKQVGN-YYSTKIWSFTMKSPCCKHQIVIQTDPKNCEY 60
PF++ C C I KG +FNA K++ G Y+S I F ++ C +I TDPK+ +Y
Sbjct: 43 PFSMRCHTCGEYIYKGKKFNARKEKTGEKYFSIDILRFYIRCTRCAAEITFITDPKHADY 102
Query: 61 VIISGAQRKTEEF---------DVEDAETLELPADEERGKL 92
SGA R E + + E AE ++P ++E KL
Sbjct: 103 AAESGASRNYEPWHEKRLQEYEENELAERNDIPEEDEMEKL 143
>sp|P28320|CWC16_YEAST Protein CWC16 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YJU2 PE=1 SV=1
Length = 278
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 2 PFNIWCGGCNSMIAKGVRFNAEKKQVGNYY--STKIWSFTMKSPCCKHQIVIQTDPKNCE 59
PF++ C CN I K +FN +K+ + Y S KI+ T+ P C + I +TDP N +
Sbjct: 46 PFSMRCLECNEYIPKSRKFNGKKELLKEKYLDSIKIYRLTISCPRCANSIAFRTDPGNSD 105
Query: 60 YVIISGAQR 68
YV+ G R
Sbjct: 106 YVMEVGGVR 114
>sp|Q6LUX5|IDI_PHOPR Isopentenyl-diphosphate Delta-isomerase OS=Photobacterium profundum
GN=idi PE=3 SV=1
Length = 180
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 15 AKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFD 74
+G+ F +++ +G Y+S +W+ T CC H P+ E + +G +R TEE
Sbjct: 44 TQGIEFLMQQRALGKYHSGGLWTNT----CCSH-------PRQGETLEQAGLRRLTEEMG 92
Query: 75 VEDAETLE 82
+ E+L+
Sbjct: 93 IVGLESLD 100
>sp|Q5QY15|SYV_IDILO Valine--tRNA ligase OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=valS PE=3 SV=1
Length = 949
Score = 35.4 bits (80), Expect = 0.43, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 56 KNCEYVIISGAQRKTEEF-DVEDAETLELPADEERGKLSDPFYRLEHQEADLQK-KKEAE 113
+N E + S A+ ++ EF + +D + A + KL P L +EA+LQ+ +K E
Sbjct: 836 QNNESFLSSLAKLESIEFIESDDDAPASMTALVDTLKLHIPMAGLIDKEAELQRLQKSIE 895
Query: 114 PRLVQIQRISDGRFSDDYALNKALRAKLRSQRKRVTEEEAASRKL 158
+ QR+ +G+ S+D ++KA A + +R++++E E ++L
Sbjct: 896 KANKEWQRL-NGKLSNDNFVSKAPEAVIAKEREKLSEAETTLKQL 939
>sp|Q8CS80|ENGB_STAES Probable GTP-binding protein EngB OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=engB PE=3 SV=1
Length = 195
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 96 FYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYAL---NKALRAKLRSQRKRVTEEE 152
FY ++ Q + ++ ++QR G+ ++Y N L +L R + TE++
Sbjct: 66 FYNIDEQLIFVDVPGYGYAKVSKVQREKFGKMIEEYITQRENLKLVIQLVDLRHQPTEDD 125
Query: 153 AASRKLGLGL---RLLPSTKEDACAAAHVKFSSKFEKNRKDKRALINAASIFSGSSISSS 209
L+ TKED A V+ K K KDK L + +I S SSI +S
Sbjct: 126 VLMYNYLKHFDIPTLVICTKEDKIAKGKVQ---KHIKRIKDKLELESGDNIISYSSIKNS 182
Query: 210 KQLEL 214
KQ E+
Sbjct: 183 KQQEI 187
>sp|Q5HNN0|ENGB_STAEQ Probable GTP-binding protein EngB OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=engB PE=3 SV=1
Length = 195
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 96 FYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYAL---NKALRAKLRSQRKRVTEEE 152
FY ++ Q + ++ ++QR G+ ++Y N L +L R + TE++
Sbjct: 66 FYNIDEQLIFVDVPGYGYAKVSKVQREKFGKMIEEYITQRENLKLVIQLVDLRHQPTEDD 125
Query: 153 AASRKLGLGL---RLLPSTKEDACAAAHVKFSSKFEKNRKDKRALINAASIFSGSSISSS 209
L+ TKED A V+ K K KDK L + +I S SSI +S
Sbjct: 126 VLMYNYLKHFDIPTLVICTKEDKIAKGKVQ---KHIKRIKDKLELESGDNIISYSSIKNS 182
Query: 210 KQLEL 214
KQ E+
Sbjct: 183 KQQEI 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,982,542
Number of Sequences: 539616
Number of extensions: 3346486
Number of successful extensions: 11567
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 11425
Number of HSP's gapped (non-prelim): 185
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)