Query 025012
Match_columns 259
No_of_seqs 177 out of 1481
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 2.7E-48 9.2E-53 342.3 23.6 219 4-237 10-230 (306)
2 2w96_A G1/S-specific cyclin-D1 100.0 2.4E-46 8.1E-51 325.1 21.0 213 10-236 3-215 (271)
3 2f2c_A Cyclin homolog, V-cycli 100.0 1.6E-44 5.6E-49 310.7 22.9 190 41-236 21-210 (254)
4 1g3n_C V-cyclin; cyclin-depend 100.0 1.9E-44 6.4E-49 310.9 21.8 192 40-237 19-210 (257)
5 1f5q_B Gamma herpesvirus cycli 100.0 1E-44 3.5E-49 310.9 15.4 189 40-238 21-209 (252)
6 2cch_B Cyclin A2, cyclin-A; co 100.0 7.9E-43 2.7E-47 301.2 22.4 195 37-240 4-201 (260)
7 2b9r_A Human cyclin B1; cell c 100.0 3.8E-42 1.3E-46 298.3 20.8 189 37-236 4-192 (269)
8 1w98_B Cyclin E, G1/S-specific 100.0 1.9E-41 6.4E-46 295.8 22.0 190 38-233 16-213 (283)
9 2i53_A Cyclin K; cell cycle, t 100.0 1.5E-34 5.3E-39 248.9 16.3 166 67-236 34-209 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 6E-33 2E-37 238.9 20.0 177 69-254 26-218 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 2E-31 6.9E-36 232.6 19.0 171 70-254 39-222 (285)
12 2pk2_A Cyclin-T1, protein TAT; 100.0 3.3E-32 1.1E-36 244.2 12.0 177 69-254 33-225 (358)
13 1zp2_A RNA polymerase II holoe 100.0 1.8E-30 6.1E-35 220.7 20.2 156 74-237 28-189 (235)
14 1jkw_A Cyclin H; cell cycle, c 100.0 4.4E-29 1.5E-33 221.3 18.1 161 71-236 54-224 (323)
15 1c9b_A General transcription f 99.9 2.4E-23 8.3E-28 173.3 18.6 155 72-237 3-157 (207)
16 1ais_B TFB TFIIB, protein (tra 99.8 3.9E-19 1.3E-23 147.0 18.0 156 71-237 6-163 (200)
17 3k7a_M Transcription initiatio 99.6 1.7E-16 5.8E-21 141.6 5.8 152 74-236 126-289 (345)
18 4bbr_M Transcription initiatio 99.3 1.1E-11 3.9E-16 110.2 9.7 151 75-236 127-289 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.7 1.7E-07 5.8E-12 80.5 11.8 108 77-188 77-184 (293)
20 1ais_B TFB TFIIB, protein (tra 96.7 0.011 3.7E-07 47.8 10.1 89 79-174 110-198 (200)
21 1c9b_A General transcription f 94.9 0.13 4.3E-06 41.6 8.8 86 78-170 103-188 (207)
22 2i53_A Cyclin K; cell cycle, t 90.0 1.5 5.3E-05 36.3 9.0 88 79-170 153-250 (258)
23 1zp2_A RNA polymerase II holoe 90.0 0.65 2.2E-05 38.2 6.5 84 79-170 136-219 (235)
24 2ivx_A Cyclin-T2; transcriptio 89.3 3.1 0.00011 34.4 10.3 87 79-169 148-238 (257)
25 3rgf_B Cyclin-C; protein kinas 87.3 1.6 5.3E-05 37.1 7.2 83 79-170 159-241 (285)
26 2pk2_A Cyclin-T1, protein TAT; 83.1 2.7 9.4E-05 36.9 6.9 88 79-170 155-246 (358)
27 2f2c_A Cyclin homolog, V-cycli 82.5 7.1 0.00024 32.2 9.0 85 79-169 154-246 (254)
28 1g3n_C V-cyclin; cyclin-depend 81.2 7.3 0.00025 32.2 8.6 86 78-169 152-246 (257)
29 2cch_B Cyclin A2, cyclin-A; co 79.6 6.1 0.00021 32.7 7.6 85 78-169 140-226 (260)
30 2b9r_A Human cyclin B1; cell c 77.3 4.2 0.00014 34.0 6.0 82 79-167 140-221 (269)
31 3h4c_A Transcription factor TF 76.4 16 0.00056 29.3 8.6 148 76-234 14-169 (260)
32 3k7a_M Transcription initiatio 74.2 0.64 2.2E-05 40.7 0.0 55 79-136 237-291 (345)
33 3g33_B CCND3 protein; Ser/Thr 71.7 16 0.00054 31.1 8.3 72 96-173 194-269 (306)
34 2w96_A G1/S-specific cyclin-D1 70.7 14 0.00048 30.7 7.6 90 79-173 159-259 (271)
35 1jkw_A Cyclin H; cell cycle, c 69.7 20 0.00069 30.7 8.6 75 92-170 185-260 (323)
36 4bbr_M Transcription initiatio 60.5 25 0.00087 30.4 7.4 57 176-236 127-183 (345)
37 2qdj_A Retinoblastoma-associat 48.2 85 0.0029 26.7 8.5 63 81-147 6-72 (304)
38 3m03_A ORC6, origin recognitio 38.9 96 0.0033 21.5 9.4 78 81-167 6-89 (95)
39 1w98_B Cyclin E, G1/S-specific 34.7 1.3E+02 0.0046 24.8 7.7 40 118-168 200-239 (283)
40 2wh0_Q Pkcev3, protein kinase 31.2 40 0.0014 17.6 2.3 18 155-172 12-29 (31)
41 1f5q_B Gamma herpesvirus cycli 24.2 1.8E+02 0.0062 23.6 6.5 81 80-169 152-240 (252)
42 1hji_B NUN-protein; bacterioph 22.2 86 0.0029 15.7 2.8 21 68-88 3-23 (26)
43 3v7d_A Suppressor of kinetocho 22.0 1.3E+02 0.0043 23.0 4.8 39 119-159 119-157 (169)
44 3o0g_D Cyclin-dependent kinase 21.8 2.5E+02 0.0085 20.8 6.8 103 75-185 28-142 (149)
45 2p1m_A SKP1-like protein 1A; F 21.0 1.3E+02 0.0044 22.6 4.6 39 119-159 111-149 (160)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-48 Score=342.33 Aligned_cols=219 Identities=25% Similarity=0.386 Sum_probs=182.9
Q ss_pred CCCCCcccccccc--ccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHH
Q 025012 4 TCSGSFPDLLCGE--DSGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWI 81 (259)
Q Consensus 4 ~~~~~~~~l~c~e--~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lvdwl 81 (259)
+.||.| +|+|+| +......+| |... +++|++++|+++|.++.|+++|++..| +++++.+|.++++||
T Consensus 10 ~~~~~~-~l~~~e~~~~~~~a~~d-p~l~--------~~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lvdwl 78 (306)
T 3g33_B 10 SPGGSM-ELLCCEGTRHAPRAGPD-PRLL--------GDQRVLQSLLRLEERYVPRASYFQCVQ-REIKPHMRKMLAYWM 78 (306)
T ss_dssp -------------------------------------CHHHHHHHHHHHGGGGSCSSCCTTTST-TTCCHHHHHHHHHHH
T ss_pred CCCCCc-ceeeecccccccccCCC-Cccc--------chHHHHHHHHHHHHHhCCCcHHHhhcC-ccCCHHHHHHHHHHH
Confidence 467775 699999 333445444 5554 889999999999999999999998655 579999999999999
Q ss_pred HHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHHHHH
Q 025012 82 LKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRM 161 (259)
Q Consensus 82 ~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i~~~ 161 (259)
++|+..|+++++|+++||+|||||+++.++.+. ++|++|+||||||+|+||..||.+.+++.. +++.|++++|++|
T Consensus 79 ~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~~~---~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~-~~~~~~~~~i~~m 154 (306)
T 3g33_B 79 LEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKA---QLQLLGAVCMLLASKLRETTPLTIEKLCIY-TDHAVSPRQLRDW 154 (306)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHHHHHHHCCCCGG---GHHHHHHHHHHHHHHHHCSSCCCTTHHHHH-TTTSSCHHHHHHH
T ss_pred HHHHHHhCCcHhHHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHHhccCCCCCHHHHHHH-hccCccHHHHHHH
Confidence 999999999999999999999999999999887 899999999999999999999999999765 7789999999999
Q ss_pred HHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcchhccCccHHHHHHHHHHHHHhcCC
Q 025012 162 ELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIP 237 (259)
Q Consensus 162 E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d~~~~~~~PS~iAaAai~la~~~~~ 237 (259)
|+.||++|+|++++|||++|+.+|++.++...+....+...+.++++.++.++.|+.|+||+||+|||++|++.++
T Consensus 155 E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~ 230 (306)
T 3g33_B 155 EVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG 230 (306)
T ss_dssp HHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988877666667778899999999999999999999999999999999886
No 2
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=2.4e-46 Score=325.09 Aligned_cols=213 Identities=24% Similarity=0.384 Sum_probs=183.2
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhC
Q 025012 10 PDLLCGEDSGIFAGESSPACSSSDLESSASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYN 89 (259)
Q Consensus 10 ~~l~c~e~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lvdwl~~v~~~~~ 89 (259)
.+|+|+|+..+..+.++|... ++|++++|+++|.++.|+++|+...| +++++.+|.++++||.+++.+++
T Consensus 3 ~~l~c~e~~~~~~~~~dp~~~---------~~~i~~~l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lv~wl~~v~~~~~ 72 (271)
T 2w96_A 3 HQLLCCEVETIRRAYPDANLL---------NDRVLRAMLKAEETCAPSVSYFKCVQ-KEVLPSMRKIVATWMLEVCEEQK 72 (271)
T ss_dssp ---CCCSSSCC--------------------CHHHHHHHHHHHHTCCCTTHHHHTC-SSCCHHHHHHHHHHHHHHHHHTT
T ss_pred cceeeCCCCccccCCCCCccc---------HHHHHHHHHHHHHHhCCCchHHHhcC-CcCCHHHHHHHHHHHHHHHHHHC
Confidence 369999966655544445432 45899999999999999999997655 57999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHHHHHHHHHHHHc
Q 025012 90 FLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVL 169 (259)
Q Consensus 90 l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i~~~E~~IL~~L 169 (259)
++++|+++|++|+|||+++.++.+. ++|++|+||||||+|+||..||.+++++.. +++.|++++|.+||+.||++|
T Consensus 73 l~~~tl~lAv~~lDRfls~~~v~~~---~lqlv~~acL~iAsK~EE~~p~~~~~~~~~-~~~~~~~~eI~~mE~~IL~~L 148 (271)
T 2w96_A 73 CEEEVFPLAMNYLDRFLSLEPVKKS---RLQLLGATCMFVASKMKETIPLTAEKLCIY-TDNSIRPEELLQMELLLVNKL 148 (271)
T ss_dssp CCTTHHHHHHHHHHHHHTTSCCCTT---THHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTTSSCHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHhCCcCCcCHH---HHHHHHHHHHHHHHHHhhcCCCCHHHHHHH-hcCCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999888 799999999999999999999999999764 678899999999999999999
Q ss_pred CCccccCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcchhccCccHHHHHHHHHHHHHhcC
Q 025012 170 DWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEI 236 (259)
Q Consensus 170 ~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d~~~~~~~PS~iAaAai~la~~~~ 236 (259)
+|++++|||++|+.+|++.++.+++....+...+.++++.++.|+.|++|+||.||+|||++|++++
T Consensus 149 ~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l 215 (271)
T 2w96_A 149 KWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGL 215 (271)
T ss_dssp TTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998887655444456778999999999999999999999999999998765
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.6e-44 Score=310.72 Aligned_cols=190 Identities=16% Similarity=0.232 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchH
Q 025012 41 EESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQ 120 (259)
Q Consensus 41 ~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lq 120 (259)
+|+++ |+++|.++.|+++|++.. ++++++++|.+++|||++++..|+++++|+++||+|+|||+++..+.+. ++|
T Consensus 21 ~~i~~-l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~~---~lq 95 (254)
T 2f2c_A 21 PRVLN-NLKLRELLLPKFTSLWEI-QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKK---TLQ 95 (254)
T ss_dssp HHHHH-HHHHHHTTSCCCSSTTTT-CSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTT---THH
T ss_pred HHHHH-HHHHHHhhCCCchhhhhc-CccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCHH---Hcc
Confidence 89999 999999999999999743 4679999999999999999999999999999999999999999999888 799
Q ss_pred HHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChHHHHH
Q 025012 121 LLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLI 200 (259)
Q Consensus 121 L~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~ 200 (259)
++|+||||||+|+||..||.+++++.. +++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.+.+....+.
T Consensus 96 Lv~~acl~iA~K~eE~~~p~~~d~~~~-~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~ 174 (254)
T 2f2c_A 96 KIGAACVLIGSKIRTVKPMTVSKLTYL-SCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLY 174 (254)
T ss_dssp HHHHHHHHHHHHHHCSSCCCHHHHSTT-C---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHH-hCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHH
Confidence 999999999999999999999999754 7788999999999999999999999999999999999998887766656667
Q ss_pred HHHHHHHHHHhcchhccCccHHHHHHHHHHHHHhcC
Q 025012 201 SRATKIILSNIQEASFLEYRPSSIAAAAILCAANEI 236 (259)
Q Consensus 201 ~~a~~~l~~~l~d~~~~~~~PS~iAaAai~la~~~~ 236 (259)
..|.++++.++.|+.|++|+||.||+||+++|++..
T Consensus 175 ~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~ 210 (254)
T 2f2c_A 175 EAASTTICKALIQPNIALLSPGLICAGGLLTTIETD 210 (254)
T ss_dssp HHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999875
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.9e-44 Score=310.88 Aligned_cols=192 Identities=22% Similarity=0.259 Sum_probs=178.5
Q ss_pred hHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCch
Q 025012 40 IEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPW 119 (259)
Q Consensus 40 ~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~l 119 (259)
++|++ +|+++|.++.|+++|+... ++++++++|.+++|||++++..|+++++|+++||+|+|||+++..+.+. ++
T Consensus 19 ~~~i~-~l~~~E~~~~p~~~y~~~~-q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~~~---~l 93 (257)
T 1g3n_C 19 DRIFY-NILEIEPRFLTSDSVFGTF-QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKE---HF 93 (257)
T ss_dssp HHHHH-HHHHHGGGGCCCGGGHHHH-TSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCCHH---HH
T ss_pred HHHHH-HHHHHHHHhCCChhHHHhc-CccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCCHH---HH
Confidence 37899 9999999999999998644 4679999999999999999999999999999999999999999999888 89
Q ss_pred HHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChHHHH
Q 025012 120 QLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFL 199 (259)
Q Consensus 120 qL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~ 199 (259)
|++|+||||||+|+||..||.+++++.. +++.|++++|.+||+.||++|+|++++|||++|+.+|++.++.+.+....+
T Consensus 94 qLv~~acl~iA~K~eE~~~p~~~d~~~~-~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~ 172 (257)
T 1g3n_C 94 QKTGSACLLVASKLRSLTPISTSSLCYA-AADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFW 172 (257)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHH
T ss_pred HHHHHHHHHHHHHHccccCCCHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHH
Confidence 9999999999999999999999999765 678899999999999999999999999999999999999888776665666
Q ss_pred HHHHHHHHHHHhcchhccCccHHHHHHHHHHHHHhcCC
Q 025012 200 ISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIP 237 (259)
Q Consensus 200 ~~~a~~~l~~~l~d~~~~~~~PS~iAaAai~la~~~~~ 237 (259)
...+.++++.++.|+.|++|+||.||+|||++|++.++
T Consensus 173 ~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~ 210 (257)
T 1g3n_C 173 HHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANV 210 (257)
T ss_dssp HHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhC
Confidence 77899999999999999999999999999999988764
No 5
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1e-44 Score=310.87 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCch
Q 025012 40 IEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPW 119 (259)
Q Consensus 40 ~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~l 119 (259)
.++++++|+++|.++.| .. . ++++++.+|.++||||++|+..|+++++|+++||+|+|||+++.++.+. ++
T Consensus 21 ~d~i~~~l~~~E~~~~p----~~-~-q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~~~---~l 91 (252)
T 1f5q_B 21 RQMIYRSEREHDARMVG----VN-V-DQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRE---NY 91 (252)
T ss_dssp HHHHHHHHHHHHHHHSS----SS-H-HHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCCGG---GH
T ss_pred HHHHHHHHHHHHHHhCc----Cc-c-CCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcCHH---HH
Confidence 45899999999999988 12 2 3568999999999999999999999999999999999999999999888 89
Q ss_pred HHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChHHHH
Q 025012 120 QLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFL 199 (259)
Q Consensus 120 qL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~ 199 (259)
||+|+|||+||+|+||..||.+++++.. +++.|++++|++||+.||++|+|+++.|||++|+++|++.++.+.+....+
T Consensus 92 qLvg~tcl~iAsK~eE~~p~~~~~l~~~-~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~ 170 (252)
T 1f5q_B 92 QSTAAVALHIAGKVRAYMPIKATQLAYL-CGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNI 170 (252)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHH-HCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHH-hCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHH
Confidence 9999999999999999999999999764 788999999999999999999999999999999999999887765555567
Q ss_pred HHHHHHHHHHHhcchhccCccHHHHHHHHHHHHHhcCCC
Q 025012 200 ISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEIPN 238 (259)
Q Consensus 200 ~~~a~~~l~~~l~d~~~~~~~PS~iAaAai~la~~~~~~ 238 (259)
...+.++++.++.|+.|+.|+||+||+||+.+++...+.
T Consensus 171 ~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~ 209 (252)
T 1f5q_B 171 YNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYD 209 (252)
T ss_dssp HHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCC
Confidence 788999999999999999999999999998777755443
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=7.9e-43 Score=301.20 Aligned_cols=195 Identities=28% Similarity=0.354 Sum_probs=180.2
Q ss_pred CCchHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCC
Q 025012 37 SASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNG 116 (259)
Q Consensus 37 ~~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~ 116 (259)
++|.+|++..|.+.|.++.|+++|++. ++++++.+|.+++|||.+++..|+++++|+++|++|+|||+++.++++.
T Consensus 4 ~eY~~di~~~l~~~E~~~~p~~~y~~~--q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~-- 79 (260)
T 2cch_B 4 PDYHEDIHTYLREMEVKCKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRG-- 79 (260)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCTTGGGG--CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHH--
T ss_pred HhHHHHHHHHHHHHHhhcCCCchhhhc--CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHH--
Confidence 569999999999999999999999997 7899999999999999999999999999999999999999999999888
Q ss_pred CchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChH
Q 025012 117 WPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFM 196 (259)
Q Consensus 117 ~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~ 196 (259)
++|++|+||||||+|+||..||.+++++.. +++.|++++|.+||+.||++|+|++++|||++|+.+|++.++.++
T Consensus 80 -~lqlv~~acl~iA~K~ee~~~~~~~d~~~i-~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~--- 154 (260)
T 2cch_B 80 -KLQLVGTAAMLLASKFEEIYPPEVAEFVYI-TDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN--- 154 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC---
T ss_pred -HHhHHHHHHHHHHHHhcccCCCCHHHHHHH-HcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh---
Confidence 899999999999999999999999999864 677899999999999999999999999999999999998877543
Q ss_pred HHHHHHHHHHHHHHhcchh-ccCccHHHHHHHHHHHHHhcC--CCCC
Q 025012 197 GFLISRATKIILSNIQEAS-FLEYRPSSIAAAAILCAANEI--PNLS 240 (259)
Q Consensus 197 ~~~~~~a~~~l~~~l~d~~-~~~~~PS~iAaAai~la~~~~--~~~~ 240 (259)
..+...|.++++.++.|+. +++|+||.||+|||++|++.+ +.|.
T Consensus 155 ~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~ 201 (260)
T 2cch_B 155 CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWP 201 (260)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcch
Confidence 2466779999999999999 999999999999999998654 4453
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=3.8e-42 Score=298.26 Aligned_cols=189 Identities=23% Similarity=0.334 Sum_probs=173.9
Q ss_pred CCchHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCC
Q 025012 37 SASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNG 116 (259)
Q Consensus 37 ~~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~ 116 (259)
++|.+|++++|+++|.++.|+++|++. + ++++++|..+++||.+++..++++++|+++|++|+|||+++.++++.
T Consensus 4 ~eY~~di~~~l~~~E~~~~~~~~y~~~--q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~-- 78 (269)
T 2b9r_A 4 SEYVKDIYAYLRQLEAAQAVRPKYLLG--R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKK-- 78 (269)
T ss_dssp ---CCTTTTTHHHHHHTTCCCTTTTSS--S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGG--
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccccC--C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHH--
Confidence 357788999999999999999999986 5 89999999999999999999999999999999999999999999888
Q ss_pred CchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChH
Q 025012 117 WPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFM 196 (259)
Q Consensus 117 ~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~ 196 (259)
++|++|+||||||+|+||..||.+++++.. +++.|++++|.+||+.||++|+|+++.|||++|+.+|.+..+.+
T Consensus 79 -~lqlv~~acL~iA~K~eE~~~p~~~d~~~~-~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~---- 152 (269)
T 2b9r_A 79 -MLQLVGVTAMFIASKYEEMYPPEIGDFAFV-TDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD---- 152 (269)
T ss_dssp -GHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-TCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC----
T ss_pred -HhhHHHHHHHHHHHhcccccCccHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC----
Confidence 899999999999999999999999999865 77889999999999999999999999999999999998876543
Q ss_pred HHHHHHHHHHHHHHhcchhccCccHHHHHHHHHHHHHhcC
Q 025012 197 GFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEI 236 (259)
Q Consensus 197 ~~~~~~a~~~l~~~l~d~~~~~~~PS~iAaAai~la~~~~ 236 (259)
..+...|.++++.++.++.+++|+||.||+|||++|++.+
T Consensus 153 ~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l 192 (269)
T 2b9r_A 153 VEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKIL 192 (269)
T ss_dssp HHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHh
Confidence 3456779999999999999999999999999999998755
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.9e-41 Score=295.84 Aligned_cols=190 Identities=21% Similarity=0.351 Sum_probs=171.1
Q ss_pred CchHHHHHHHHHHHHhhCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcC-CccCCCCC
Q 025012 38 ASIEESIAGFIEDERNFVPGFDYLTRFQTHSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYS-RRLPDNNG 116 (259)
Q Consensus 38 ~~~~e~l~~ll~~E~~~~~~~~y~~~~q~~~i~~~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~-~~i~~~~~ 116 (259)
++.+|++++|+++|.++.|+++|++. ++++++++|.++++||.+++.+++++++|+++|++|+|||+++ ..+.+.
T Consensus 16 ~y~~~i~~~l~~~E~~~~~~~~y~~~--q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~~~-- 91 (283)
T 1w98_B 16 ANREEVWKIMLNKEKTYLRDQHFLEQ--HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKT-- 91 (283)
T ss_dssp SCHHHHHHHHHHHTTTSCCCTTGGGG--CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCCGG--
T ss_pred cCHHHHHHHHHHHHHHhCCCchhhcc--CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCCHH--
Confidence 57889999999999999999999997 7899999999999999999999999999999999999999998 577766
Q ss_pred CchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCCh-
Q 025012 117 WPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTF- 195 (259)
Q Consensus 117 ~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~- 195 (259)
++|++|+||||||+|+||..||.+++++.. +++.|++++|.+||+.||++|+|++++|||++|+.+|++.++.++..
T Consensus 92 -~lqlv~~acL~iA~K~eE~~~p~l~~~~~i-~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~ 169 (283)
T 1w98_B 92 -LLQLIGISSLFIAAKLEEIYPPKLHQFAYV-TDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHE 169 (283)
T ss_dssp -GHHHHHHHHHHHHHHHHCSSCCCHHHHHHT-TTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCC
T ss_pred -HHHHHHHHHHHHHHHhcccCCCcHHHHHHH-HcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhh
Confidence 899999999999999999999999999764 77889999999999999999999999999999999999876543221
Q ss_pred ------HHHHHHHHHHHHHHHhcchhccCccHHHHHHHHHHHHH
Q 025012 196 ------MGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAA 233 (259)
Q Consensus 196 ------~~~~~~~a~~~l~~~l~d~~~~~~~PS~iAaAai~la~ 233 (259)
.......+.++++.++.|+.|++|+||.||+|||++|.
T Consensus 170 ~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~ 213 (283)
T 1w98_B 170 VLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS 213 (283)
T ss_dssp SSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH
Confidence 11223346789999999999999999999999999984
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.5e-34 Score=248.93 Aligned_cols=166 Identities=21% Similarity=0.285 Sum_probs=148.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhh
Q 025012 67 HSLDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQV 146 (259)
Q Consensus 67 ~~i~~~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~ 146 (259)
++.+..+|..+++||.+++..++++++|+++|++|||||+++.++.+. ++|++|+||||||+|+||. ++.+++++.
T Consensus 34 ~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~---~~qlv~~acL~lA~K~eE~-~~~l~d~~~ 109 (258)
T 2i53_A 34 PATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQF---PRYVTGACCLFLAGKVEET-PKKCKDIIK 109 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhc---CHHHHHHHHHHHHHccccc-cccHHHHHH
Confidence 357789999999999999999999999999999999999999999887 7999999999999999995 889999874
Q ss_pred h----ccCccc------cHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcchhc
Q 025012 147 E----GAKYIF------ETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASF 216 (259)
Q Consensus 147 ~----~~~~~~------s~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d~~~ 216 (259)
. .+++.| ++++|.+||+.||++|+|+++++||++|+..|++.++.+.+....+...|.++++.++.++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~ 189 (258)
T 2i53_A 110 TARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLS 189 (258)
T ss_dssp HHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGG
T ss_pred HHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCch
Confidence 2 123334 489999999999999999999999999999999988776544457888999999999999999
Q ss_pred cCccHHHHHHHHHHHHHhcC
Q 025012 217 LEYRPSSIAAAAILCAANEI 236 (259)
Q Consensus 217 ~~~~PS~iAaAai~la~~~~ 236 (259)
+.|+||.||+|||++|.+..
T Consensus 190 l~~~Ps~IAaAai~lA~~~~ 209 (258)
T 2i53_A 190 LQWEPEIIAVAVMYLAGRLC 209 (258)
T ss_dssp GTSCHHHHHHHHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHh
Confidence 99999999999999998744
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=6e-33 Score=238.94 Aligned_cols=177 Identities=19% Similarity=0.235 Sum_probs=149.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhc
Q 025012 69 LDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG 148 (259)
Q Consensus 69 i~~~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~ 148 (259)
....+|..+++||.+++..|+++++|+++|++|||||+++.++.+. ++|++|+||||||+|+||. |+.+++++...
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~---~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~ 101 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKF---NKNIISSTALFLAAKVEEQ-ARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhh---CHHHHHHHHHHHHhccccC-CcCHHHHHHHH
Confidence 4568999999999999999999999999999999999999999887 7999999999999999999 89999986321
Q ss_pred -------------cCcccc--HHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhc-
Q 025012 149 -------------AKYIFE--TKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQ- 212 (259)
Q Consensus 149 -------------~~~~~s--~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~- 212 (259)
++..|+ +++|++||+.||++|+|+++++||+.|+..|++.++.+ ..+...|.++++.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~----~~~~~~A~~~~~~sl~~ 177 (257)
T 2ivx_A 102 HACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS----KDLAQTSYFMATNSLHL 177 (257)
T ss_dssp HHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC----cHHHHHHHHHHHhhhhc
Confidence 233455 99999999999999999999999999999999888654 3466779999988885
Q ss_pred chhccCccHHHHHHHHHHHHHhcCCCCCCCCCCchhhHhhhh
Q 025012 213 EASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDGL 254 (259)
Q Consensus 213 d~~~~~~~PS~iAaAai~la~~~~~~~~~~~~~~~~~w~~~l 254 (259)
+..++.|+||.||+|||++|.+..+. ......++..|++.+
T Consensus 178 ~~~~l~~~Ps~IAaAai~lA~~~~~~-~~p~~~~~~~W~~~~ 218 (257)
T 2ivx_A 178 TTFCLQYKPTVIACVCIHLACKWSNW-EIPVSTDGKHWWEYV 218 (257)
T ss_dssp CCGGGTSCHHHHHHHHHHHHHHHHTC-CCCCCTTCCCGGGGT
T ss_pred ccHHHcCCHHHHHHHHHHHHHHHhCC-CCCCCCCCchHHHHh
Confidence 45589999999999999999876531 122222344577654
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.98 E-value=2e-31 Score=232.59 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhc-
Q 025012 70 DASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG- 148 (259)
Q Consensus 70 ~~~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~- 148 (259)
..++|..+++||.+++..++++++|+++|++|||||+++..+.+. ++|++|+||||||+|+||..+|.+++++...
T Consensus 39 e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~---~~~lva~acLfLA~K~EE~~~~~~~di~~~~~ 115 (285)
T 3rgf_B 39 YWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSI---DPVLMAPTCVFLASKVEEFGVVSNTRLIAAAT 115 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTS---CHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhc---CHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence 357899999999999999999999999999999999999999888 7999999999999999999888888876321
Q ss_pred ------------cCccccHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcchhc
Q 025012 149 ------------AKYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASF 216 (259)
Q Consensus 149 ------------~~~~~s~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d~~~ 216 (259)
..+.+++++|++||+.||++|+|++.++||+.|+..|++.++.. ..+...|.++++.++.+..+
T Consensus 116 ~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~----~~~~~~A~~~l~~sl~t~~~ 191 (285)
T 3rgf_B 116 SVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE----DMLLPLAWRIVNDTYRTDLC 191 (285)
T ss_dssp HHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH----HHHHHHHHHHHHHHTTSSHH
T ss_pred HHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHccChh
Confidence 13347899999999999999999999999999999999888752 46778899999999999999
Q ss_pred cCccHHHHHHHHHHHHHhcCCCCCCCCCCchhhHhhhh
Q 025012 217 LEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDGL 254 (259)
Q Consensus 217 ~~~~PS~iAaAai~la~~~~~~~~~~~~~~~~~w~~~l 254 (259)
+.|+||.||+|||++|.+..+. ....|++.+
T Consensus 192 l~~~Ps~IAaAaiylA~~~~~~-------~~~~W~~~~ 222 (285)
T 3rgf_B 192 LLYPPFMIALACLHVACVVQQK-------DARQWFAEL 222 (285)
T ss_dssp HHSCHHHHHHHHHHHHHHHTTC-------CCHHHHHTS
T ss_pred hccCHHHHHHHHHHHHHHHcCC-------ChhhHHHHH
Confidence 9999999999999999987753 224576654
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.97 E-value=3.3e-32 Score=244.21 Aligned_cols=177 Identities=18% Similarity=0.220 Sum_probs=148.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhc
Q 025012 69 LDASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG 148 (259)
Q Consensus 69 i~~~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~ 148 (259)
....+|..+++||.+++..|+++++|+++|++|||||+++..+.+. ++|++|+||||||+|+||. |+.+++++...
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~---~~qlva~acLfLA~K~EE~-p~~l~d~v~v~ 108 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRF---PGNSVAPAALFLAAKVEEQ-PKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccc---cHHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999999887 7999999999999999999 88999987321
Q ss_pred -------------cCcccc--HHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcc
Q 025012 149 -------------AKYIFE--TKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQE 213 (259)
Q Consensus 149 -------------~~~~~s--~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d 213 (259)
.+..|+ +++|++||+.||++|+|++.++||+.||..|++.++.. ..+...|.++++.++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~----~~l~~~A~~ll~~sl~~ 184 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS----KDLAQTSYFMATNSLHL 184 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC----HHHHHHHHHHHHHHTTT
T ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhc
Confidence 123454 89999999999999999999999999999999887653 34677899999999854
Q ss_pred -hhccCccHHHHHHHHHHHHHhcCCCCCCCCCCchhhHhhhh
Q 025012 214 -ASFLEYRPSSIAAAAILCAANEIPNLSLVNPEHAESWCDGL 254 (259)
Q Consensus 214 -~~~~~~~PS~iAaAai~la~~~~~~~~~~~~~~~~~w~~~l 254 (259)
..++.|+||.||+|||++|++..+ +..........|++.+
T Consensus 185 t~l~l~y~Ps~IAaAAI~lA~~~l~-~~~p~~~~~~~W~~~~ 225 (358)
T 2pk2_A 185 TTFSLQYTPPVVACVCIHLACKWSN-WEIPVSTDGKHWWEYV 225 (358)
T ss_dssp SCGGGTSCHHHHTTTTTTTHHHHTT-CCCCCCSSSCCTTTTS
T ss_pred CcchhccCHHHHHHHHHHHHHHHhC-CCCCCCccccchHHHH
Confidence 447999999999999999988764 1222222334576654
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.8e-30 Score=220.67 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCC-CCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhcc---
Q 025012 74 REESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPD-NNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGA--- 149 (259)
Q Consensus 74 R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~-~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~--- 149 (259)
|...++||.+++..++++++|+++|++|||||+++..+.+ . ++|++|+||||||+|+||. |+.+++++....
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~---~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~ 103 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGF---SLEALVATCIYLSCKVEEC-PVHIRTICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCC---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccccc---CHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999988 6 7999999999999999995 788999875421
Q ss_pred --CccccHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcchhccCccHHHHHHH
Q 025012 150 --KYIFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAA 227 (259)
Q Consensus 150 --~~~~s~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d~~~~~~~PS~iAaA 227 (259)
...+++++|.+||+.||++|+|++.++||+.|+..|++.++.+ ..+...|.++++.++.+..++.|+||.||+|
T Consensus 104 ~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~----~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaA 179 (235)
T 1zp2_A 104 SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN----QKQLEFAWSIVNDSYASSLCLMAHPHQLAYA 179 (235)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC----HHHHHHHHHHHHHHTTTTGGGTSCHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHcCCchhccCHHHHHHH
Confidence 1357999999999999999999999999999999999876443 3467889999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 025012 228 AILCAANEIP 237 (259)
Q Consensus 228 ai~la~~~~~ 237 (259)
||++|.+..+
T Consensus 180 ai~lA~~~~~ 189 (235)
T 1zp2_A 180 ALLISCCNDE 189 (235)
T ss_dssp HHHHHHTSCT
T ss_pred HHHHHHHhcC
Confidence 9999998765
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.96 E-value=4.4e-29 Score=221.27 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhc
Q 025012 71 ASAREESVAWILKVQAYYN--FLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEG 148 (259)
Q Consensus 71 ~~~R~~lvdwl~~v~~~~~--l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~ 148 (259)
..+|...++||.+++..|+ ++++|+++|++|||||+++.++.+. ++|++|+||||||+|+||. ++.+++++...
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~---~~~lva~acLfLA~K~EE~-~~~l~d~v~~~ 129 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEY---HPRIIMLTCAFLACKVDEF-NVSSPQFVGNL 129 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhc---CHHHHHHHHHHHHHhhhcC-CCCHHHHHHHh
Confidence 4578889999999999999 9999999999999999999999888 7999999999999999998 67899987543
Q ss_pred cCc----cccHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcC----CCCChHHHHHHHHHHHHHHHhcchhccCcc
Q 025012 149 AKY----IFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLD----PTGTFMGFLISRATKIILSNIQEASFLEYR 220 (259)
Q Consensus 149 ~~~----~~s~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~----~~~~~~~~~~~~a~~~l~~~l~d~~~~~~~ 220 (259)
... .+++++|++||+.||++|+|++.++||+.|+..|+..+. ..+ ....+...|.++++.++.+..++.|+
T Consensus 130 ~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~-~~~~l~~~A~~~l~~sl~t~~~l~~~ 208 (323)
T 1jkw_A 130 RESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILE-NPEILRKTADDFLNRIALTDAYLLYT 208 (323)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCC-CHHHHHHHHHHHHHHHTTSTHHHHSC
T ss_pred ccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhccHHHcCC
Confidence 222 367899999999999999999999999999999986541 111 23467788999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q 025012 221 PSSIAAAAILCAANEI 236 (259)
Q Consensus 221 PS~iAaAai~la~~~~ 236 (259)
||.||+|||++|....
T Consensus 209 Ps~IAaAai~lA~~~~ 224 (323)
T 1jkw_A 209 PSQIALTAILSSASRA 224 (323)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999998643
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.91 E-value=2.4e-23 Score=173.33 Aligned_cols=155 Identities=20% Similarity=0.181 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCc
Q 025012 72 SAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKY 151 (259)
Q Consensus 72 ~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~ 151 (259)
+......++|.+++..+++++.|..+|+.||+||+.+..+... +.+++++||+|+|+|+||. |++++++... .+
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~---~~~~v~aaclylAcK~ee~-p~~l~di~~~-~~- 76 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGR---ANDAIASACLYIACRQEGV-PRTFKEICAV-SR- 76 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHT-SS-
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCC---CHHHHHHHHHHHHHHhcCC-CCCHHHHHHH-HC-
Confidence 3467788999999999999999999999999999999988777 7999999999999999998 8899999754 33
Q ss_pred cccHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcchhccCccHHHHHHHHHHH
Q 025012 152 IFETKTIRRMELLVLSVLDWRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILC 231 (259)
Q Consensus 152 ~~s~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d~~~~~~~PS~iAaAai~l 231 (259)
+++++|.++|+.|++.|+|++.+++|+.|+..|.+.++.++ .+...|.++++.+..+.-+.+++|+.||+||||+
T Consensus 77 -~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~----~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiyl 151 (207)
T 1c9b_A 77 -ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK----QVQMAATHIARKAVELDLVPGRSPISVAAAAIYM 151 (207)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHH
Confidence 88999999999999999999999999999999999888753 4667799999999888888999999999999999
Q ss_pred HHhcCC
Q 025012 232 AANEIP 237 (259)
Q Consensus 232 a~~~~~ 237 (259)
|.+..+
T Consensus 152 A~~~~~ 157 (207)
T 1c9b_A 152 ASQASA 157 (207)
T ss_dssp HHHTSS
T ss_pred HHHHHC
Confidence 987653
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.83 E-value=3.9e-19 Score=147.02 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccC
Q 025012 71 ASAREESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAK 150 (259)
Q Consensus 71 ~~~R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~ 150 (259)
.+......++|.+++..+++++.+...|..+++|++.+..+... ..+.++++|+|+|+|.++ .|..++++... .+
T Consensus 6 er~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr---~~~~vaaAclylAcr~~~-~p~~l~di~~~-~~ 80 (200)
T 1ais_B 6 ERNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGR---SIESVMAACVYAACRLLK-VPRTLDEIADI-AR 80 (200)
T ss_dssp --CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTC---CHHHHHHHHHHHHHHHHT-CCCCHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCC---CHHHHHHHHHHHHHHHcC-CCCCHHHHHHH-HC
Confidence 34467899999999999999999999999999999999877666 699999999999999988 58899999754 33
Q ss_pred ccccHHHHHHHHHHHHHHcCCcccc--CCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcchhccCccHHHHHHHH
Q 025012 151 YIFETKTIRRMELLVLSVLDWRLRS--VTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAA 228 (259)
Q Consensus 151 ~~~s~~~i~~~E~~IL~~L~f~l~~--~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d~~~~~~~PS~iAaAa 228 (259)
++..+|.++++.|++.|+|++.. ++|..|+..|.+.++.++ .+...|.++++.+..+..+.+++|+.||+||
T Consensus 81 --v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~----~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAa 154 (200)
T 1ais_B 81 --VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE----KVRRRAIEILDEAYKRGLTSGKSPAGLVAAA 154 (200)
T ss_dssp --SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH----HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHcCcccCCCHHHHHHHH
Confidence 78999999999999999999999 999999999999998753 4667899999999988888999999999999
Q ss_pred HHHHHhcCC
Q 025012 229 ILCAANEIP 237 (259)
Q Consensus 229 i~la~~~~~ 237 (259)
||+|.+..+
T Consensus 155 ly~A~~~~~ 163 (200)
T 1ais_B 155 LYIASLLEG 163 (200)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 999977553
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.7e-16 Score=141.60 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccc
Q 025012 74 REESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIF 153 (259)
Q Consensus 74 R~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~ 153 (259)
.......|.+++..++++..+.-.|..||.|++....+... ..+.++++|+|||+|.++. |..+.++... .+ +
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr---~~~~vaaAclyiAcR~e~~-prtl~ei~~~-~~--v 198 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGK---SMESIMAASILIGCRRAEV-ARTFKEIQSL-IH--V 198 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCC---CSHHHHTTTTTTTSBTTBS-SCCHHHHHHS-SS--C
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCC---cHHHHHHHHHHHHHHHcCC-CccHHHHHHH-HC--C
Confidence 45778899999999999999999999999999999888766 6999999999999998776 8899998754 33 7
Q ss_pred cHHHHHHHHHHHHHHcC------------CccccCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcchhccCccH
Q 025012 154 ETKTIRRMELLVLSVLD------------WRLRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRP 221 (259)
Q Consensus 154 s~~~i~~~E~~IL~~L~------------f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d~~~~~~~P 221 (259)
++++|.++++.|++.|+ +++.+++|..|+..|.+.++.+. .+...|.++++.+..+.-+..++|
T Consensus 199 ~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~----~v~~~A~~i~~~~~~~~l~~Gr~P 274 (345)
T 3k7a_M 199 KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEIAGKSP 274 (345)
T ss_dssp CSHHHHHHHHHHHHHHTCC-------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhchhcCCCH
Confidence 89999999999999999 99999999999999999887753 466778999999988888889999
Q ss_pred HHHHHHHHHHHHhcC
Q 025012 222 SSIAAAAILCAANEI 236 (259)
Q Consensus 222 S~iAaAai~la~~~~ 236 (259)
+.||+||||+|.+..
T Consensus 275 ~~IAaAaIylAa~~~ 289 (345)
T 3k7a_M 275 ITIAVVSIYLNILLF 289 (345)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999997543
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.27 E-value=1.1e-11 Score=110.22 Aligned_cols=151 Identities=11% Similarity=0.086 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCcccc
Q 025012 75 EESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFE 154 (259)
Q Consensus 75 ~~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s 154 (259)
......|.+++..++++..+.-.|..++.++.....+... ....++++|+|+|+|.++. |.++.++... .+ .+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGr---s~e~vaAAclYiACR~~~~-prtl~eI~~~-~~--v~ 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGK---SMESIMAASILIGCRRAEV-ARTFKEIQSL-IH--VK 199 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTC---CHHHHHHHHHHHHHHHTCC-BCCHHHHHHH-HT--CC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCC---CHHHHHHHHHHHHHHhcCC-CccHHHHHHH-hC--CC
Confidence 5566778999999999999999999999999998877666 6999999999999998765 7888888754 22 68
Q ss_pred HHHHHHHHHHHHHHcCCc------------cccCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcchhccCccHH
Q 025012 155 TKTIRRMELLVLSVLDWR------------LRSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPS 222 (259)
Q Consensus 155 ~~~i~~~E~~IL~~L~f~------------l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d~~~~~~~PS 222 (259)
+++|.+..+.|.+.|+.. +...+|.+|+..|.+.++.+. .+...|..+++.+..+.-....+|+
T Consensus 200 ~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~----~v~~~A~~i~~~~~~~~i~~GR~P~ 275 (345)
T 4bbr_M 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEIAGKSPI 275 (345)
T ss_dssp TTHHHHHHHHHHHCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH----HHHHHHHHHHHHHHhcccccCCChH
Confidence 899999999999999974 677899999999999888754 3556678888777776666789999
Q ss_pred HHHHHHHHHHHhcC
Q 025012 223 SIAAAAILCAANEI 236 (259)
Q Consensus 223 ~iAaAai~la~~~~ 236 (259)
.||+||||+|.+..
T Consensus 276 ~IAAAaIylAa~l~ 289 (345)
T 4bbr_M 276 TIAVVSIYLNILLF 289 (345)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999996543
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.68 E-value=1.7e-07 Score=80.46 Aligned_cols=108 Identities=8% Similarity=0.008 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHH
Q 025012 77 SVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETK 156 (259)
Q Consensus 77 lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~ 156 (259)
+-+|+.++.+.-+++.+++-.|+.|+||+..+.+-..-++...+-+-++|+.+|+|+-+........+... +.++.+
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV---gGisl~ 153 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV---GGVRCH 153 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH---HTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc---cCcCHH
Confidence 66789999999999999999999999999885432221233689999999999999988877777777654 347999
Q ss_pred HHHHHHHHHHHHcCCccccCCHHHHHHHHHHh
Q 025012 157 TIRRMELLVLSVLDWRLRSVTPFSFIYFFACK 188 (259)
Q Consensus 157 ~i~~~E~~IL~~L~f~l~~~tp~~fl~~~l~~ 188 (259)
++..||+..|..|+|+|.+.. ..|..+++..
T Consensus 154 ELN~LE~eFL~lLdf~L~V~~-ee~~~cy~E~ 184 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPRD-HNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCCT-THHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCceeeCH-HHHHHHHHHH
Confidence 999999999999999997764 4566666654
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.74 E-value=0.011 Score=47.76 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHH
Q 025012 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTI 158 (259)
Q Consensus 79 dwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i 158 (259)
++|.+.+..++++.++...|..++.+.....-.... ....++++|+|+|++.... +.+.+++... ++ .+..+|
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr---~P~~iAaAaly~A~~~~~~-~~t~~ei~~~-~~--vs~~ti 182 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGK---SPAGLVAAALYIASLLEGE-KRTQREVAEV-AR--VTEVTV 182 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTS---CHHHHHHHHHHHHHHHTTC-CCCHHHHHHH-HT--CCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCC---CHHHHHHHHHHHHHHHhCC-CCCHHHHHHH-hC--CCHHHH
Confidence 567888999999999999999999999876555444 6999999999999998764 4567777643 33 688999
Q ss_pred HHHHHHHHHHcCCccc
Q 025012 159 RRMELLVLSVLDWRLR 174 (259)
Q Consensus 159 ~~~E~~IL~~L~f~l~ 174 (259)
.+.=+.+.+.|+.++.
T Consensus 183 ~~~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 183 RNRYKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999986553
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.93 E-value=0.13 Score=41.63 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHH
Q 025012 78 VAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKT 157 (259)
Q Consensus 78 vdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~ 157 (259)
.++|.+.+..++++.++...|..++..-+...-.... ....+|++|+++|++..+. +...+++... . ..+..+
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~---~P~~IAaAaiylA~~~~~~-~~~~~~i~~~-~--~v~~~t 175 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGR---SPISVAAAAIYMASQASAE-KRTQKEIGDI-A--GVADVT 175 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTC---CHHHHHHHHHHHHHHTSSS-CCCHHHHHHH-H--TCCHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCC---ChHHHHHHHHHHHHHHHCC-CCCHHHHHHH-h--CCCHHH
Confidence 3567788899999999999999999998875444344 6999999999999998764 3455666433 2 367888
Q ss_pred HHHHHHHHHHHcC
Q 025012 158 IRRMELLVLSVLD 170 (259)
Q Consensus 158 i~~~E~~IL~~L~ 170 (259)
|.+.=+.+.+.++
T Consensus 176 I~~~~~~l~~~l~ 188 (207)
T 1c9b_A 176 IRQSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888777777655
No 22
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=90.04 E-value=1.5 Score=36.27 Aligned_cols=88 Identities=9% Similarity=0.039 Sum_probs=60.9
Q ss_pred HHHHHHHHHhCCch----hHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCch------hhhhhhc
Q 025012 79 AWILKVQAYYNFLP----LTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSL------LDLQVEG 148 (259)
Q Consensus 79 dwl~~v~~~~~l~~----~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~------~~l~~~~ 148 (259)
+++......++.+. ++...|..+++..+.....-.. ....+|++|+++|++......+.. ...-..
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~---~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~- 228 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQW---EPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQ- 228 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTS---CHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGG-
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhcc---ChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHH-
Confidence 46677777777776 5778888899887766555455 689999999999999865432211 111110
Q ss_pred cCccccHHHHHHHHHHHHHHcC
Q 025012 149 AKYIFETKTIRRMELLVLSVLD 170 (259)
Q Consensus 149 ~~~~~s~~~i~~~E~~IL~~L~ 170 (259)
-...++.++|...-..|++...
T Consensus 229 ~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 229 FVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp TSSSCCHHHHHHHHHHHHTTTS
T ss_pred hccCCCHHHHHHHHHHHHHHHh
Confidence 0124789999999998887654
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=89.99 E-value=0.65 Score=38.18 Aligned_cols=84 Identities=10% Similarity=-0.061 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHH
Q 025012 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTI 158 (259)
Q Consensus 79 dwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i 158 (259)
+++......++++.++...|..++..-+.....-.. ....+|++|+++|++......|. +-... . .++.++|
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~---~Ps~IAaAai~lA~~~~~~~~~~--~~~~~-~--~~~~~~i 207 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMA---HPHQLAYAALLISCCNDENTIPK--LLDLI-K--STDAFKV 207 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTS---CHHHHHHHHHHHHHTSCTTHHHH--HHHHC-C--HHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhcc---CHHHHHHHHHHHHHHhcCCCCCC--Ccchh-h--cCCHHHH
Confidence 345556667788999999999999987765554444 68999999999999985532221 11111 1 4678888
Q ss_pred HHHHHHHHHHcC
Q 025012 159 RRMELLVLSVLD 170 (259)
Q Consensus 159 ~~~E~~IL~~L~ 170 (259)
...=..|++...
T Consensus 208 ~~~~~~i~~ly~ 219 (235)
T 1zp2_A 208 ILCVQRIISIYY 219 (235)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 888888877543
No 24
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=89.32 E-value=3.1 Score=34.39 Aligned_cols=87 Identities=11% Similarity=0.026 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHhc-CCccCCCCCCchHHHHHHHHHHHHHhhcccCCchh---hhhhhccCcccc
Q 025012 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLY-SRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLL---DLQVEGAKYIFE 154 (259)
Q Consensus 79 dwl~~v~~~~~l~~~t~~~Av~l~DRfl~-~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~---~l~~~~~~~~~s 154 (259)
+++......++.+.++...|..++..-+. ..-.-.. ....+|++|+++|++......|... ..... -...++
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~---~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~-~~~~~~ 223 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQY---KPTVIACVCIHLACKWSNWEIPVSTDGKHWWEY-VDPTVT 223 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTS---CHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGG-TCSSCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcC---CHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHH-hCCCCC
Confidence 45666677788888888889888865542 2223333 5899999999999999665433211 12111 122378
Q ss_pred HHHHHHHHHHHHHHc
Q 025012 155 TKTIRRMELLVLSVL 169 (259)
Q Consensus 155 ~~~i~~~E~~IL~~L 169 (259)
.++|...-..|++.+
T Consensus 224 ~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 224 LELLDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
No 25
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=87.32 E-value=1.6 Score=37.08 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHH
Q 025012 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTI 158 (259)
Q Consensus 79 dwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i 158 (259)
+++.+....++.+.++..+|..++..-+.....-.. ....+|++|+++|++...... ..... ...++.++|
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~---~Ps~IAaAaiylA~~~~~~~~---~~W~~---~~~~~~~~l 229 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLY---PPFMIALACLHVACVVQQKDA---RQWFA---ELSVDMEKI 229 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHS---CHHHHHHHHHHHHHHHTTCCC---HHHHH---TSCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhcc---CHHHHHHHHHHHHHHHcCCCh---hhHHH---HHCCCHHHH
Confidence 466677778888888999999999887655444344 588999999999999865432 22221 124788999
Q ss_pred HHHHHHHHHHcC
Q 025012 159 RRMELLVLSVLD 170 (259)
Q Consensus 159 ~~~E~~IL~~L~ 170 (259)
..+-..|++...
T Consensus 230 ~~~~~~il~ly~ 241 (285)
T 3rgf_B 230 LEIIRVILKLYE 241 (285)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888887654
No 26
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=83.08 E-value=2.7 Score=36.87 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=59.7
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHhcCCc-cCCCCCCchHHHHHHHHHHHHHhhcccCCchh---hhhhhccCcccc
Q 025012 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRR-LPDNNGWPWQLLSVACLSLAAKMEETVVPSLL---DLQVEGAKYIFE 154 (259)
Q Consensus 79 dwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~-i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~---~l~~~~~~~~~s 154 (259)
+++......++.+.++..+|..++..-+.... .-.. ....||++|+++|+++.....|... .... .....++
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y---~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~-~~~~~vt 230 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQY---TPPVVACVCIHLACKWSNWEIPVSTDGKHWWE-YVDATVT 230 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTS---CHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTT-TSCSSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhcc---CHHHHHHHHHHHHHHHhCCCCCCCccccchHH-HHhccCC
Confidence 35566667788888888999988866553222 2333 5889999999999999764433211 1211 1122468
Q ss_pred HHHHHHHHHHHHHHcC
Q 025012 155 TKTIRRMELLVLSVLD 170 (259)
Q Consensus 155 ~~~i~~~E~~IL~~L~ 170 (259)
.++|...-..|++.++
T Consensus 231 ~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 231 LELLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998763
No 27
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=82.47 E-value=7.1 Score=32.21 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=53.6
Q ss_pred HHHHHHHHHhCCchhHH----HHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCc----hhhhhhhccC
Q 025012 79 AWILKVQAYYNFLPLTS----YLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPS----LLDLQVEGAK 150 (259)
Q Consensus 79 dwl~~v~~~~~l~~~t~----~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~----~~~l~~~~~~ 150 (259)
+|+......++.+.++. ..|..+++.-+.....-.. ....+|++|+++|.+.....+.. ...+.. .+
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~---~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~-~t- 228 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALL---SPGLICAGGLLTTIETDNTNCRPWTCYLEDLSS-IL- 228 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTS---CHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHH-HH-
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhcc---CHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH-HH-
Confidence 34555555666666542 3567777766655455445 68999999999999985222222 333432 23
Q ss_pred ccccHHHHHHHHHHHHHHc
Q 025012 151 YIFETKTIRRMELLVLSVL 169 (259)
Q Consensus 151 ~~~s~~~i~~~E~~IL~~L 169 (259)
.++.++|...=..|.+.+
T Consensus 229 -g~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 229 -NFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp -TCCHHHHHHHHHHHHHHH
T ss_pred -CcCHHHHHHHHHHHHHHH
Confidence 368889888877776654
No 28
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=81.22 E-value=7.3 Score=32.19 Aligned_cols=86 Identities=8% Similarity=-0.106 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhCCchhH----HHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccC----C-chhhhhhhc
Q 025012 78 VAWILKVQAYYNFLPLT----SYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVV----P-SLLDLQVEG 148 (259)
Q Consensus 78 vdwl~~v~~~~~l~~~t----~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~----p-~~~~l~~~~ 148 (259)
.+|+......++.+.++ ...|..+++..+.....-.. ....+|++|+++|.+.-...+ + -...+.. .
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~---~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~-~ 227 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSL---PASIISAAGCALLVPANVIPQDTHSGGVVPQLAS-I 227 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGS---CHHHHHHHHHHHHCCGGGSCC-----CHHHHHHH-H
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCc---CHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHH-H
Confidence 35666666677776654 34577777766655544444 688999999999999866421 1 2223322 2
Q ss_pred cCccccHHHHHHHHHHHHHHc
Q 025012 149 AKYIFETKTIRRMELLVLSVL 169 (259)
Q Consensus 149 ~~~~~s~~~i~~~E~~IL~~L 169 (259)
+ .++.++|...=..|.+.+
T Consensus 228 t--~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 228 L--GCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp H--TCCHHHHHHHHHHHHHHH
T ss_pred H--CcCHHHHHHHHHHHHHHH
Confidence 2 368888888777776653
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=79.62 E-value=6.1 Score=32.74 Aligned_cols=85 Identities=7% Similarity=-0.084 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCch-hHHHHHHHHHHHHhcCCc-cCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccH
Q 025012 78 VAWILKVQAYYNFLP-LTSYLSVNYMDRFLYSRR-LPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFET 155 (259)
Q Consensus 78 vdwl~~v~~~~~l~~-~t~~~Av~l~DRfl~~~~-i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~ 155 (259)
.+|+......++.+. .+..+|..+++.-+.... .-.. ....+|++|+++|.+.-+. ++....+... + .++.
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~---~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~-~--g~~~ 212 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKY---LPSVIAGAAFHLALYTVTG-QSWPESLIRK-T--GYTL 212 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTS---CHHHHHHHHHHHHHHHHHS-CCSCHHHHHH-H--CCCH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCC---CHHHHHHHHHHHHHHHhCC-CcchHHHHHH-h--CcCH
Confidence 356666677777665 667778778777554444 4444 5889999999999998654 3333344322 3 3688
Q ss_pred HHHHHHHHHHHHHc
Q 025012 156 KTIRRMELLVLSVL 169 (259)
Q Consensus 156 ~~i~~~E~~IL~~L 169 (259)
++|...=..|.+.+
T Consensus 213 ~~i~~~~~~l~~~~ 226 (260)
T 2cch_B 213 ESLKPCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777654
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=77.27 E-value=4.2 Score=33.97 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=54.1
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHH
Q 025012 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTI 158 (259)
Q Consensus 79 dwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i 158 (259)
+|+...+...+.+.++..+|..+++.-+.....-.. ....+|++|+++|.+.-+.. +....+... ++ ++.++|
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~---~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~-tg--~~~~~l 212 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHF---PPSQIAAGAFSLALKILDNG-EWTPTLQHY-LS--YTEESL 212 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSS---CTTHHHHHHHHHHHHHHTCC-CSCTTHHHH-SC--CCSSTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcC---CHHHHHHHHHHHHHHHhCCC-CCCHHHHHH-HC--CCHHHH
Confidence 566677777788888888898999887766555555 57899999999999986543 222333221 22 455555
Q ss_pred HHHHHHHHH
Q 025012 159 RRMELLVLS 167 (259)
Q Consensus 159 ~~~E~~IL~ 167 (259)
...=..|.+
T Consensus 213 ~~~~~~l~~ 221 (269)
T 2b9r_A 213 LPVMQHLAK 221 (269)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
No 31
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=76.40 E-value=16 Score=29.35 Aligned_cols=148 Identities=11% Similarity=0.077 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCCc---cCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCcc
Q 025012 76 ESVAWILKVQAYYNFLPLTSYLSVNYMDRFLYSRR---LPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYI 152 (259)
Q Consensus 76 ~lvdwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~---i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~ 152 (259)
.+.+-|+.++++-+++.-++--||-+--.|--... .... +-+-++++|++||+.- -..|..+.++-.. +..
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE---~q~dVAAAc~miAae~-~~~PiplaE~r~l--D~s 87 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVE---RQPDVAAACLMIAAEE-AQQPLPLAEVRCL--DSS 87 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCC---CHHHHHHHHHHHHHHH-TTCCCCHHHHHHH--CTT
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhccccc---ccHHHHHHHHHHHHHH-cCCCccHHHHHHH--hhh
Confidence 34556789999999999999999999988876532 3334 6899999999999973 3456667666432 222
Q ss_pred ccHHHHHHHHHHHHHHcCCcc-----ccCCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcchhccCccHHHHHHH
Q 025012 153 FETKTIRRMELLVLSVLDWRL-----RSVTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAA 227 (259)
Q Consensus 153 ~s~~~i~~~E~~IL~~L~f~l-----~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d~~~~~~~PS~iAaA 227 (259)
.. +|.--=..|++.++-.= ...-.-..+.+|+..++.+- ..-.-.+..+++..-.-..+..+---.--.-
T Consensus 88 L~--Dvelrr~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~---s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~ 162 (260)
T 3h4c_A 88 LG--DVELRRADIVRELHLEDSERRLRDTFADNLLVKYILKLGLQV---SLYLPHCKRLLTALGRVEALAGLTVADRVTT 162 (260)
T ss_dssp CC--CHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHHTCGGGTTCCHHHHHHH
T ss_pred hh--HHHHHHHHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccch---hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33 33333334556665421 11122234445555555531 1112234444443333333444443333344
Q ss_pred HHHHHHh
Q 025012 228 AILCAAN 234 (259)
Q Consensus 228 ai~la~~ 234 (259)
|+++|+.
T Consensus 163 AlLLArT 169 (260)
T 3h4c_A 163 ALLLART 169 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5556653
No 32
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=74.20 E-value=0.64 Score=40.70 Aligned_cols=55 Identities=5% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcc
Q 025012 79 AWILKVQAYYNFLPLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEET 136 (259)
Q Consensus 79 dwl~~v~~~~~l~~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~ 136 (259)
++|.+.+..++++.++...|..++.+.....-.... ...-+|++|+|+|+++...
T Consensus 237 ~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr---~P~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGK---SPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCC---CHHHHHHHHHHHHHHHHCC
Confidence 566677777777777788888887776654333333 5788999999999998654
No 33
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=71.69 E-value=16 Score=31.11 Aligned_cols=72 Identities=11% Similarity=-0.031 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCch----hhhhhhccCccccHHHHHHHHHHHHHHcCC
Q 025012 96 YLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPSL----LDLQVEGAKYIFETKTIRRMELLVLSVLDW 171 (259)
Q Consensus 96 ~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~----~~l~~~~~~~~~s~~~i~~~E~~IL~~L~f 171 (259)
..|.++++..+....+-.. ....+|++|+++|.+.-+..++.. ..+.. .+ .++.++|..+-..|++.+.=
T Consensus 194 ~~a~~~l~lsl~d~~~l~~---~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~-~t--g~~~~~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 194 KHAQTFLALCATDYTFAMY---PPSMIATGSIGAAVQGLGACSMSGDELTELLAG-IT--GTEVDCLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHCGGGTTS---CHHHHHHHHHHHHHHTCC---CCHHHHHHHHHH-HH--TCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhhccC---CHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHH-HH--CCCHHHHHHHHHHHHHHHHH
Confidence 4455666655554444444 688999999999999876544332 22222 22 37889999888888877664
Q ss_pred cc
Q 025012 172 RL 173 (259)
Q Consensus 172 ~l 173 (259)
.+
T Consensus 268 ~l 269 (306)
T 3g33_B 268 SL 269 (306)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=70.75 E-value=14 Score=30.68 Aligned_cols=90 Identities=9% Similarity=0.033 Sum_probs=53.1
Q ss_pred HHHHHHHHHhCCchhHH----HHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhccc----CC---chhhhhhh
Q 025012 79 AWILKVQAYYNFLPLTS----YLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETV----VP---SLLDLQVE 147 (259)
Q Consensus 79 dwl~~v~~~~~l~~~t~----~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~----~p---~~~~l~~~ 147 (259)
+|+......++.+.++. ..|..+++..+....+-.. ....+|++|+++|.+.-+.. ++ ...+.+..
T Consensus 159 ~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~---~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~ 235 (271)
T 2w96_A 159 DFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISN---PPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSR 235 (271)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHS---CHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhcc---CHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHH
Confidence 45555566666665543 3455666654433333233 57889999999999875431 11 11112222
Q ss_pred ccCccccHHHHHHHHHHHHHHcCCcc
Q 025012 148 GAKYIFETKTIRRMELLVLSVLDWRL 173 (259)
Q Consensus 148 ~~~~~~s~~~i~~~E~~IL~~L~f~l 173 (259)
.+ .++.++|...=..|++.++=.+
T Consensus 236 ~~--~v~~~~l~~c~~~i~~l~~~~~ 259 (271)
T 2w96_A 236 VI--KCDPDCLRACQEQIEALLESSL 259 (271)
T ss_dssp HH--TSCHHHHHHHHHHHHHHHTTTT
T ss_pred HH--CcCHHHHHHHHHHHHHHHHHHH
Confidence 23 3688899888888888776544
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=69.68 E-value=20 Score=30.68 Aligned_cols=75 Identities=5% Similarity=-0.023 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCc-hhhhhhhccCccccHHHHHHHHHHHHHHcC
Q 025012 92 PLTSYLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPS-LLDLQVEGAKYIFETKTIRRMELLVLSVLD 170 (259)
Q Consensus 92 ~~t~~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~-~~~l~~~~~~~~~s~~~i~~~E~~IL~~L~ 170 (259)
......|..++..-+.....-.. ....+|++|+++|++......+. ...+. ......++.++|...=+.|+..+.
T Consensus 185 ~~l~~~A~~~l~~sl~t~~~l~~---~Ps~IAaAai~lA~~~~~~~~~~w~~~l~-~~~~~~~~~~~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 185 EILRKTADDFLNRIALTDAYLLY---TPSQIALTAILSSASRAGITMESYLSESL-MLKENRTCLSQLLDIMKSMRNLVK 260 (323)
T ss_dssp HHHHHHHHHHHHHHTTSTHHHHS---CHHHHHHHHHHHHHHHHSCCCTTHHHHHT-TSCSSSCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHcC---CHHHHHHHHHHHHHHHcCCChHHHHHHHh-ccccccccHHHHHHHHHHHHHHHH
Confidence 44557777777765544333333 58899999999999987654333 22221 111234677888877777766554
No 36
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=60.52 E-value=25 Score=30.43 Aligned_cols=57 Identities=18% Similarity=0.104 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcchhccCccHHHHHHHHHHHHHhcC
Q 025012 176 VTPFSFIYFFACKLDPTGTFMGFLISRATKIILSNIQEASFLEYRPSSIAAAAILCAANEI 236 (259)
Q Consensus 176 ~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~~~l~d~~~~~~~PS~iAaAai~la~~~~ 236 (259)
...+..|..+...++.++ .+...|..+...+.....+-..+...+||||||+|.+.-
T Consensus 127 ~~a~~~I~~~~~~L~Lp~----~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~ 183 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPK----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRA 183 (345)
T ss_dssp THHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhc
Confidence 456677777878888763 466778888877776555666889999999999997654
No 37
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=48.18 E-value=85 Score=26.68 Aligned_cols=63 Identities=10% Similarity=-0.040 Sum_probs=45.3
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHHhcC----CccCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhh
Q 025012 81 ILKVQAYYNFLPLTSYLSVNYMDRFLYS----RRLPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVE 147 (259)
Q Consensus 81 l~~v~~~~~l~~~t~~~Av~l~DRfl~~----~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~ 147 (259)
..++|+.++++..|.-.|...+.+.-+. ...... -+..-.+|||+|++-.+....++.+++..
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~----~~~~w~acLY~a~~~~~~n~vsLt~LLr~ 72 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK----KKELWGICIFIAAVDLDEMSFTFTELQKN 72 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------C----HHHHHHHHHHHHHHHHTCCCSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc----hHHHHHHhHHHHhhccCCCcCcHHHHHHH
Confidence 4578889999999999999999997664 123333 45555566999998777777788777653
No 38
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=38.95 E-value=96 Score=21.54 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=53.7
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHHhcCCc------cCCCCCCchHHHHHHHHHHHHHhhcccCCchhhhhhhccCcccc
Q 025012 81 ILKVQAYYNFLPLTSYLSVNYMDRFLYSRR------LPDNNGWPWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFE 154 (259)
Q Consensus 81 l~~v~~~~~l~~~t~~~Av~l~DRfl~~~~------i~~~~~~~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s 154 (259)
+.++|..|++.. ..-.|-.++++|=..-+ ++- .-..+.++|+|.|+|..-..+...+ +... ++ .+
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~----s~P~f~aaA~~~acr~~K~kVdK~K-L~~~-s~--lk 76 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDL----SRPLFTSAALLSACKILKLKVDKNK-MVAT-SG--VK 76 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCT----TSHHHHHHHHHHHHHHTTCCCCHHH-HHHT-TC--BC
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccc----cccHHHHHHHHHHHHHHccCCCHHH-HHHH-HC--CC
Confidence 457888898876 77788899999986643 222 3566778899999999887664433 3221 22 56
Q ss_pred HHHHHHHHHHHHH
Q 025012 155 TKTIRRMELLVLS 167 (259)
Q Consensus 155 ~~~i~~~E~~IL~ 167 (259)
+.++-+.+..+-+
T Consensus 77 ~~~f~~l~~~~e~ 89 (95)
T 3m03_A 77 KAIFDRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766544
No 39
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=34.72 E-value=1.3e+02 Score=24.77 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHHHHHHHHHHHH
Q 025012 118 PWQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIRRMELLVLSV 168 (259)
Q Consensus 118 ~lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i~~~E~~IL~~ 168 (259)
..-.+|++|+++|+. ...+.. .++ ++.++|...-..|+..
T Consensus 200 ~PS~iAaAai~la~~--------~~~l~~-~tg--~~~~~i~~c~~~l~~~ 239 (283)
T 1w98_B 200 PYGILAASALYHFSS--------SELMQK-VSG--YQWCDIENCVKWMVPF 239 (283)
T ss_dssp CHHHHHHHHHHHTSC--------HHHHHH-HSC--CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--------hHHHHH-HhC--CCHHHHHHHHHHHHHH
Confidence 466788999999864 122222 233 6778887766666543
No 40
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=31.21 E-value=40 Score=17.59 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 025012 155 TKTIRRMELLVLSVLDWR 172 (259)
Q Consensus 155 ~~~i~~~E~~IL~~L~f~ 172 (259)
.++|..+|..|-+.|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 589999999999999886
No 41
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=24.17 E-value=1.8e+02 Score=23.65 Aligned_cols=81 Identities=12% Similarity=0.032 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCchhHH----HHHHHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHhhcccCCc----hhhhhhhccCc
Q 025012 80 WILKVQAYYNFLPLTS----YLSVNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKMEETVVPS----LLDLQVEGAKY 151 (259)
Q Consensus 80 wl~~v~~~~~l~~~t~----~~Av~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~eE~~~p~----~~~l~~~~~~~ 151 (259)
|+......++.+.+.. ..|..+++..+....+-.. ..-.+|++|+..+.+ . ..+. ...+. ..+
T Consensus 152 FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l~d~~~l~~---~PS~iAaaa~~~~l~--~-~~~~~~~~~~~L~-~~t-- 222 (252)
T 1f5q_B 152 LICYILHIMHAPREDYLNIYNLCRPKIFCALCDGRSAMK---RPVLITLACMHLTMN--Q-KYDYYENRIDGVC-KSL-- 222 (252)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHCHHHHTS---CHHHHHHHHHHHHHT--T-TCHHHHHHHHHHH-HHT--
T ss_pred HHHHHHHHcCCCcchHHHHHHHHHHHHHHHHhchhhhcc---CHHHHHHHHHHHHhc--c-CCCchhhHHHHHH-HHH--
Confidence 4444444445444321 2344444444443333333 467788888655542 1 1222 12222 122
Q ss_pred cccHHHHHHHHHHHHHHc
Q 025012 152 IFETKTIRRMELLVLSVL 169 (259)
Q Consensus 152 ~~s~~~i~~~E~~IL~~L 169 (259)
.++.+++..+-..|.+.+
T Consensus 223 ~~~~~~l~~C~~~i~~~l 240 (252)
T 1f5q_B 223 YITKEELHQCCDLVDIAI 240 (252)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 367888888877777665
No 42
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=22.24 E-value=86 Score=15.65 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHh
Q 025012 68 SLDASAREESVAWILKVQAYY 88 (259)
Q Consensus 68 ~i~~~~R~~lvdwl~~v~~~~ 88 (259)
.++...|+++..|--.++..+
T Consensus 3 gltsrdrrriarwekriayal 23 (26)
T 1hji_B 3 GLTSRDRRRIARWEKRIAYAL 23 (26)
T ss_dssp SSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHH
Confidence 478899999999988887654
No 43
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=22.04 E-value=1.3e+02 Score=23.01 Aligned_cols=39 Identities=13% Similarity=0.030 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHHH
Q 025012 119 WQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIR 159 (259)
Q Consensus 119 lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i~ 159 (259)
-.|+-++|-.+|.++....|-.++.+.... +-||+++-.
T Consensus 119 k~Lldl~c~~vA~~ikgktpeeiR~~f~I~--nd~t~eEe~ 157 (169)
T 3v7d_A 119 KPLLDAGCKVVAEMIRGRSPEEIRRTFNIV--NDFTPEEEA 157 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCC--CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCCC--CCCCHHHHH
Confidence 578888999999999887776666664432 337776543
No 44
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=21.76 E-value=2.5e+02 Score=20.80 Aligned_cols=103 Identities=18% Similarity=0.252 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHh---CCchhHHHHH-----HHHHHHHhcCCccCCCCCCchHHHHHHHHHHHHHh--hcccCCchhhh
Q 025012 75 EESVAWILKVQAYY---NFLPLTSYLS-----VNYMDRFLYSRRLPDNNGWPWQLLSVACLSLAAKM--EETVVPSLLDL 144 (259)
Q Consensus 75 ~~lvdwl~~v~~~~---~l~~~t~~~A-----v~l~DRfl~~~~i~~~~~~~lqL~a~acL~IAsK~--eE~~~p~~~~l 144 (259)
..+|-|+..|-+.+ |.....+..- ++++=|=.-...+.... ++|-+.+|||++|--+ .|+-.|.-.-+
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~se~--eLqa~~lTCLYlsYSYmGNEISYPLKPFl 105 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDH--ELQAVLLTCLYLSYSYMGNEISYPLKPFL 105 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCCSHH--HHHHHHHHHHHHHHHHHCSSSCCCSGGGC
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccCCHH--HHHHHHHHHHHHHHHHhcccccccCcchh
Confidence 46888998888775 2222222111 23333333333344332 7999999999999888 55554433333
Q ss_pred hhhccCccccHHHHHHHHHHHHHHcCCcccc--CCHHHHHHHH
Q 025012 145 QVEGAKYIFETKTIRRMELLVLSVLDWRLRS--VTPFSFIYFF 185 (259)
Q Consensus 145 ~~~~~~~~~s~~~i~~~E~~IL~~L~f~l~~--~tp~~fl~~~ 185 (259)
.. . +++.+-+-=..|++.+.=++-. ..|..|-+.|
T Consensus 106 -v~--~---~k~~FW~rcl~iin~~S~~ML~iN~dp~~Ftevf 142 (149)
T 3o0g_D 106 -VE--S---CKEAFWDRCLSVINLMSSKMLQINADPHYFTQVF 142 (149)
T ss_dssp -CC--S---CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred -hc--c---cHHHHHHHHHHHHHhhchhhheecCCccHHHHHH
Confidence 22 1 3455544444455444433322 3455555544
No 45
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=20.99 E-value=1.3e+02 Score=22.62 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHhhcccCCchhhhhhhccCccccHHHHH
Q 025012 119 WQLLSVACLSLAAKMEETVVPSLLDLQVEGAKYIFETKTIR 159 (259)
Q Consensus 119 lqL~a~acL~IAsK~eE~~~p~~~~l~~~~~~~~~s~~~i~ 159 (259)
-.|+-++|-++|.++....|-.++...... +-||+++-.
T Consensus 111 ~~Lldl~c~~vA~~ikgkt~eeir~~f~I~--nd~t~eEe~ 149 (160)
T 2p1m_A 111 KNLLDLTCQTVADMIKGKTPEEIRTTFNIK--NDFTPEEEE 149 (160)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCC--CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCCC--CCCCHHHHH
Confidence 467888999999999877666666665432 237766543
Done!