Query 025013
Match_columns 259
No_of_seqs 188 out of 1357
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:15:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1.9E-73 4.1E-78 526.5 14.9 217 36-259 93-324 (324)
2 cd00693 secretory_peroxidase H 100.0 2.5E-68 5.5E-73 490.0 16.6 216 36-258 73-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 6.4E-52 1.4E-56 378.3 15.8 178 38-255 75-256 (289)
4 cd00691 ascorbate_peroxidase A 100.0 2.2E-49 4.8E-54 357.0 14.9 171 37-244 73-251 (253)
5 PF00141 peroxidase: Peroxidas 100.0 3.8E-50 8.3E-55 357.6 7.6 171 38-223 55-230 (230)
6 PLN02879 L-ascorbate peroxidas 100.0 4.7E-49 1E-53 353.8 13.9 167 38-244 78-248 (251)
7 PLN02364 L-ascorbate peroxidas 100.0 8.9E-49 1.9E-53 352.2 13.6 168 37-244 76-248 (250)
8 cd00692 ligninase Ligninase an 100.0 1.7E-48 3.8E-53 361.4 15.6 176 40-259 88-287 (328)
9 cd00649 catalase_peroxidase_1 100.0 6.9E-47 1.5E-51 356.6 18.4 209 25-249 111-401 (409)
10 TIGR00198 cat_per_HPI catalase 100.0 1.5E-44 3.3E-49 359.7 17.9 203 26-245 122-404 (716)
11 cd00314 plant_peroxidase_like 100.0 3.8E-42 8.2E-47 309.6 14.0 169 38-240 63-255 (255)
12 PRK15061 catalase/hydroperoxid 100.0 8.6E-41 1.9E-45 331.5 18.0 205 25-246 123-411 (726)
13 cd08201 plant_peroxidase_like_ 100.0 3.1E-35 6.7E-40 264.7 12.9 157 53-240 97-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 4.4E-31 9.5E-36 240.7 13.3 178 23-242 69-296 (297)
15 TIGR00198 cat_per_HPI catalase 99.9 4.5E-27 9.7E-32 234.9 13.4 171 25-243 491-710 (716)
16 PRK15061 catalase/hydroperoxid 99.9 8.2E-27 1.8E-31 232.1 14.3 176 26-243 499-722 (726)
17 COG0376 KatG Catalase (peroxid 99.9 5.6E-23 1.2E-27 197.5 13.1 193 41-242 143-416 (730)
18 COG0376 KatG Catalase (peroxid 99.5 2.6E-14 5.6E-19 138.2 7.6 174 25-243 508-726 (730)
19 PTZ00411 transaldolase-like pr 73.4 29 0.00063 33.0 9.5 60 77-136 180-252 (333)
20 PF11895 DUF3415: Domain of un 72.5 3.4 7.3E-05 31.3 2.4 19 226-244 2-20 (80)
21 TIGR00874 talAB transaldolase. 57.4 98 0.0021 29.3 9.6 61 76-136 167-240 (317)
22 PRK05269 transaldolase B; Prov 53.2 1.4E+02 0.0031 28.1 10.1 61 76-136 169-242 (318)
23 PRK12346 transaldolase A; Prov 51.7 1.5E+02 0.0033 28.0 10.0 60 76-136 168-241 (316)
24 PRK12309 transaldolase/EF-hand 50.5 2.1E+02 0.0045 27.8 10.9 59 77-136 174-246 (391)
25 KOG0400 40S ribosomal protein 49.3 7.8 0.00017 32.2 0.8 35 106-140 29-64 (151)
26 cd00957 Transaldolase_TalAB Tr 40.0 1.4E+02 0.003 28.1 7.8 59 77-136 168-240 (313)
27 PF12493 DUF3709: Protein of u 33.6 19 0.0004 22.5 0.6 19 4-22 9-27 (33)
28 PF08097 Toxin_26: Conotoxin T 33.0 14 0.0003 17.5 -0.0 9 4-12 2-10 (11)
29 PF00043 GST_C: Glutathione S- 27.8 82 0.0018 22.7 3.4 30 28-63 35-64 (95)
30 PF04225 OapA: Opacity-associa 26.5 59 0.0013 24.5 2.4 24 111-134 11-34 (85)
31 PF09349 OHCU_decarbox: OHCU d 24.2 83 0.0018 26.4 3.1 34 105-138 31-67 (159)
32 PLN02161 beta-amylase 23.7 86 0.0019 31.7 3.5 33 217-253 235-272 (531)
33 PF12637 TSCPD: TSCPD domain; 23.2 66 0.0014 24.7 2.2 29 35-63 54-90 (95)
34 PF08069 Ribosomal_S13_N: Ribo 22.2 32 0.00069 24.7 0.2 29 102-130 25-53 (60)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.9e-73 Score=526.46 Aligned_cols=217 Identities=33% Similarity=0.590 Sum_probs=205.1
Q ss_pred hhchhhhhhccC---CCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhccccCCCCCCCCCHHH
Q 025013 36 ILKSPILTIIKS---PACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSA 112 (259)
Q Consensus 36 ~~~~~vi~~~k~---~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~ 112 (259)
+.++++||.||+ ++||++|||||||||| +++||+++|||.|+|++||||+++|.+++++ +||+|+.++++
T Consensus 93 l~Gf~~i~~iK~~~e~~CPg~VSCADilalA------arDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~ 165 (324)
T PLN03030 93 LRGYDVIDDAKTQLEAACPGVVSCADILALA------ARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDV 165 (324)
T ss_pred cchHHHHHHHHHHHHhhCCCcccHHHHHHHH------hhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHH
Confidence 578999999999 7899999999999996 8999999999999999999999999877775 89999999999
Q ss_pred HHHHHHHcCCChHHHHHHhcCcccccccccccCccccC--------CCCCCHHHHHHhhccCCCCCCCCccccCCCCCCc
Q 025013 113 LISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN--------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPT 184 (259)
Q Consensus 113 l~~~F~~~Gls~~d~VaLsGaHTiG~~hc~~f~~Rl~~--------dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~ 184 (259)
|++.|+++||+.+|||+|+||||||++||.+|.+|||| ||+||+.|+..|+..||..+.+.+.+++|+.||.
T Consensus 166 l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~ 245 (324)
T PLN03030 166 QKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSN 245 (324)
T ss_pred HHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCc
Confidence 99999999999999999999999999999999999995 8999999999999999964433346889999999
Q ss_pred ccchHHHHHhhcccccccchhhhhcCcchHHHHHHHhhCH----HHHHHHHHHHHHHhhcCCCCCCCCCcccccCccCC
Q 025013 185 CFDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASI----SVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKIN 259 (259)
Q Consensus 185 ~FDn~Yy~~ll~~~glL~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~KM~~lgvltG~~GeIR~~C~~vN 259 (259)
+|||+||+||+.++|+|+|||+|+.|++|+.+|++||.|+ +.|+++|++||+|||+|+|+||.+||||++|+.+|
T Consensus 246 ~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 246 RFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred ccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 9999999999999999999999999999999999999874 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.5e-68 Score=489.96 Aligned_cols=216 Identities=44% Similarity=0.782 Sum_probs=204.9
Q ss_pred hhchhhhhhccC---CCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhccccCCCCCCCCCHHH
Q 025013 36 ILKSPILTIIKS---PACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSA 112 (259)
Q Consensus 36 ~~~~~vi~~~k~---~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~ 112 (259)
+.++++||.||+ +.||++|||||||||| +++||+++|||.|+|++||+|+++|.+.++ +.||+|+.++++
T Consensus 73 l~g~~~i~~iK~~~e~~cp~~VScADiialA------ar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~ 145 (298)
T cd00693 73 LRGFDVIDDIKAALEAACPGVVSCADILALA------ARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQ 145 (298)
T ss_pred cchhHHHHHHHHHHHhhCCCcccHHHHHHHh------hhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHH
Confidence 457889999998 6899999999999996 899999999999999999999998877665 689999999999
Q ss_pred HHHHHHHcCCChHHHHHHhcCcccccccccccCccccC-------CCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcc
Q 025013 113 LISSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN-------DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTC 185 (259)
Q Consensus 113 l~~~F~~~Gls~~d~VaLsGaHTiG~~hc~~f~~Rl~~-------dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~ 185 (259)
|++.|+++||+++|||+|+||||||++||.+|.+|||+ ||+||+.|+..|++.||..+.+.+.+++|+.||.+
T Consensus 146 l~~~F~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~ 225 (298)
T cd00693 146 LISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNT 225 (298)
T ss_pred HHHHHHHcCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCc
Confidence 99999999999999999999999999999999999984 89999999999999999765556778999999999
Q ss_pred cchHHHHHhhcccccccchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccCccC
Q 025013 186 FDNLYYKNLLNKKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINCRKI 258 (259)
Q Consensus 186 FDn~Yy~~ll~~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgvltG~~GeIR~~C~~v 258 (259)
|||+||+||+.++|+|+||++|+.|++|+.+|++||+|++.|+++|++||+||++|+|+||.+||||++|+.|
T Consensus 226 FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 226 FDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cccHHHHHHHhcccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=6.4e-52 Score=378.28 Aligned_cols=178 Identities=28% Similarity=0.399 Sum_probs=160.4
Q ss_pred chhhhhhccCCCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhccccCCCCCCCCCHHHHHHHH
Q 025013 38 KSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSF 117 (259)
Q Consensus 38 ~~~vi~~~k~~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F 117 (259)
+.++||.||.+ + ++|||||||+|| +++||+++|||.|+|++||+|+++++ ++++||+|+.+++++++.|
T Consensus 75 g~~vid~iK~~-~-~~VScADilalA------ardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F 143 (289)
T PLN02608 75 AIDLCEPVKAK-H-PKITYADLYQLA------GVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVF 143 (289)
T ss_pred HHHHHHHHHHH-c-CCcCHHHHHHHH------HHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHH
Confidence 57788888885 3 489999999996 89999999999999999999999985 4568999999999999999
Q ss_pred HHcCCChHHHHHHhcCcccccccccccCccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccchHHHHHhhcc
Q 025013 118 SAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNK 197 (259)
Q Consensus 118 ~~~Gls~~d~VaLsGaHTiG~~hc~~f~~Rl~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~ll~~ 197 (259)
+++|||++|||+|+||||||++||. |+ +..+ +++ .||.+|||+||+|++.+
T Consensus 144 ~~~Gl~~~D~VaLsGAHTiG~ahc~----r~---------------------g~~g---~~~-~Tp~~FDN~Yy~~ll~~ 194 (289)
T PLN02608 144 YRMGLSDKDIVALSGGHTLGRAHPE----RS---------------------GFDG---PWT-KEPLKFDNSYFVELLKG 194 (289)
T ss_pred HHcCCCHHHHhhhcccccccccccc----CC---------------------CCCC---CCC-CCCCccChHHHHHHHcC
Confidence 9999999999999999999999994 43 0011 123 69999999999999998
Q ss_pred --ccc--ccchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccC
Q 025013 198 --KGL--LHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINC 255 (259)
Q Consensus 198 --~gl--L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgvltG~~GeIR~~C 255 (259)
+|+ |+||++|+.|++|+.+|+.||.|++.|+++|++||+||++|+|+||++||+.+.-
T Consensus 195 ~~~gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 195 ESEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred CcCCccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 788 7999999999999999999999999999999999999999999999999998754
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=2.2e-49 Score=356.99 Aligned_cols=171 Identities=25% Similarity=0.395 Sum_probs=155.1
Q ss_pred hchhhhhhccCCCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhccccCCCCCCCCCHHHHHHH
Q 025013 37 LKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISS 116 (259)
Q Consensus 37 ~~~~vi~~~k~~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~ 116 (259)
.+.++||.||++ +| +|||||||||| +++||+.+|||.|+|++||+|+.+|....++.+||.|+.++++|++.
T Consensus 73 ~~~~~i~~iK~~-~~-~VScADilalA------ar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~ 144 (253)
T cd00691 73 IARKLLEPIKKK-YP-DISYADLWQLA------GVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDV 144 (253)
T ss_pred HHHHHHHHHHHH-cC-CCCHHHHHHHH------HHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHH
Confidence 467889999985 45 89999999996 89999999999999999999999998777788899999999999999
Q ss_pred HHHcCCChHHHHHHhcCcccccccccccCccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccchHHHHHhhc
Q 025013 117 FSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLN 196 (259)
Q Consensus 117 F~~~Gls~~d~VaLsGaHTiG~~hc~~f~~Rl~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~ll~ 196 (259)
|+++|||++|||+|+||||||++||..+ . ..+.+ + .||.+|||+||+||+.
T Consensus 145 F~~~Gls~~d~VaLsGaHTiG~a~c~~~--~-----------------------~~g~~---~-~tp~~FDn~Yy~~ll~ 195 (253)
T cd00691 145 FYRMGFNDQEIVALSGAHTLGRCHKERS--G-----------------------YDGPW---T-KNPLKFDNSYFKELLE 195 (253)
T ss_pred HHhcCCCHHHHHHhcccceeecccccCC--C-----------------------CCCCC---C-CCCCcccHHHHHHHhc
Confidence 9999999999999999999999999421 0 00111 2 5999999999999999
Q ss_pred ccc--------cccchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 025013 197 KKG--------LLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPL 244 (259)
Q Consensus 197 ~~g--------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgvl 244 (259)
++| +|+||++|+.|++|+.+|+.||+|+++|+++|++||+||++|+|.
T Consensus 196 ~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 196 EDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred CCCccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999 999999999999999999999999999999999999999999986
No 5
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=3.8e-50 Score=357.58 Aligned_cols=171 Identities=43% Similarity=0.723 Sum_probs=151.5
Q ss_pred chhhhhhccC---CCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhccccCCCCCCCCCHHHHH
Q 025013 38 KSPILTIIKS---PACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALI 114 (259)
Q Consensus 38 ~~~vi~~~k~---~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~ 114 (259)
+.++|+.||. ..||++|||||||+|| +++||+.+|||.|+|++||+|+++++..++ .+||.|+.++++|+
T Consensus 55 ~~~~i~~ik~~~~~~cp~~VS~ADiialA------a~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~ 127 (230)
T PF00141_consen 55 GFDVIDPIKAKLEAACPGVVSCADIIALA------ARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLL 127 (230)
T ss_dssp HHHHHHHHHHHHCHHSTTTS-HHHHHHHH------HHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHH
T ss_pred eeechhhHHhhhcccccCCCCHHHHHHHH------hhhccccccccccccccccccccccccccc-ccccccccccchhh
Confidence 4566777777 5799999999999996 899999999999999999999999998777 68999999999999
Q ss_pred HHHHHcCCChHHHHHHhcCcccccccccccCccccC--CCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccchHHHH
Q 025013 115 SSFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYN--DSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYK 192 (259)
Q Consensus 115 ~~F~~~Gls~~d~VaLsGaHTiG~~hc~~f~~Rl~~--dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~ 192 (259)
+.|+++|||++|||||+||||||++||.+|. |||. ||.||+.|+.. .| ..+.+. .+++| ||.+|||+||+
T Consensus 128 ~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~-rl~~~~dp~~d~~~~~~---~C-~~~~~~-~~~~d--tp~~fDN~Yy~ 199 (230)
T PF00141_consen 128 AFFARKGLSAEEMVALSGAHTIGRAHCSSFS-RLYFPPDPTMDPGYAGQ---NC-NSGGDN-GVPLD--TPTVFDNSYYK 199 (230)
T ss_dssp HHHHHTT--HHHHHHHHGGGGSTEESGGCTG-GTSCSSGTTSTHHHHHH---SS-STSGCT-CEESS--STTS-SSHHHH
T ss_pred hhhhccccchhhhcceecccccccceecccc-cccccccccccccccee---cc-CCCccc-ccccc--CCCcchhHHHH
Confidence 9999999999999999999999999999999 9995 89999999987 89 433333 78899 99999999999
Q ss_pred HhhcccccccchhhhhcCcchHHHHHHHhhC
Q 025013 193 NLLNKKGLLHSDQELFNGNSADFLVKRYAAS 223 (259)
Q Consensus 193 ~ll~~~glL~SD~~L~~d~~t~~~V~~yA~d 223 (259)
++++++|+|+||++|++|++|+.+|++||+|
T Consensus 200 ~ll~~~gll~SD~~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 200 NLLNGRGLLPSDQALLNDPETRPIVERYAQD 230 (230)
T ss_dssp HHHHTEEEEHHHHHHHHSTTHHHHHHHHHHT
T ss_pred HHhcCCCcCHHHHHHhcCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999986
No 6
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=4.7e-49 Score=353.79 Aligned_cols=167 Identities=28% Similarity=0.467 Sum_probs=149.9
Q ss_pred chhhhhhccCCCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhccccCCCCCCCCCHHHHHHHH
Q 025013 38 KSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSF 117 (259)
Q Consensus 38 ~~~vi~~~k~~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F 117 (259)
+.++|++||++. ++|||||||||| +++||+++|||.|+|++||+|++++. ++++||+|+.++++|++.|
T Consensus 78 ~~~~i~~iK~~~--~~VScADilalA------a~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F 146 (251)
T PLN02879 78 AVRLLDPIKELF--PILSYADFYQLA------GVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVF 146 (251)
T ss_pred HHHHHHHHHHHc--CCcCHHHHHHHH------HHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHH
Confidence 456788888853 589999999996 89999999999999999999999875 4568999999999999999
Q ss_pred HHcCCChHHHHHHhcCcccccccccccCccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccchHHHHHhhcc
Q 025013 118 SAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNK 197 (259)
Q Consensus 118 ~~~Gls~~d~VaLsGaHTiG~~hc~~f~~Rl~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~ll~~ 197 (259)
+++|||++|||||+||||||++||. |. +.++. +| .||.+|||+||++|+.+
T Consensus 147 ~~~Gl~~~dlVALsGaHTiG~ah~~----r~---------------------g~~g~---~d-~tp~~FDN~Yy~~ll~~ 197 (251)
T PLN02879 147 GRMGLNDKDIVALSGGHTLGRCHKE----RS---------------------GFEGA---WT-PNPLIFDNSYFKEILSG 197 (251)
T ss_pred HHcCCCHHHHeeeeccccccccccc----cc---------------------cCCCC---CC-CCccceeHHHHHHHHcC
Confidence 9999999999999999999999994 21 11122 44 69999999999999999
Q ss_pred --ccc--ccchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 025013 198 --KGL--LHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPL 244 (259)
Q Consensus 198 --~gl--L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgvl 244 (259)
+|+ |+||++|+.|++|+++|++||+||++|+++|++||+||++||+.
T Consensus 198 ~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 198 EKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred CcCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 898 67999999999999999999999999999999999999999975
No 7
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=8.9e-49 Score=352.24 Aligned_cols=168 Identities=29% Similarity=0.458 Sum_probs=148.3
Q ss_pred hchhhhhhccCCCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhccccCCCCCCCCCHHHHHHH
Q 025013 37 LKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISS 116 (259)
Q Consensus 37 ~~~~vi~~~k~~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~ 116 (259)
.+.++|+.||++. ++|||||||+|| +++||+++|||.|+|++||+|+++++ +++.||.|+.++++|++.
T Consensus 76 ~~~~~i~~ik~~~--~~VScADilalA------ardAV~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~ 144 (250)
T PLN02364 76 IALRLLDPIREQF--PTISFADFHQLA------GVVAVEVTGGPDIPFHPGREDKPQPP---PEGRLPDATKGCDHLRDV 144 (250)
T ss_pred HHHHHHHHHHHHc--CCcCHHHHHHHH------HHHHHHhcCCCeeCCCCCCCCccccc---ccCCCCCCCcCHHHHHHH
Confidence 3456788888853 589999999996 89999999999999999999999986 356799999999999999
Q ss_pred HHH-cCCChHHHHHHhcCcccccccccccCccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccchHHHHHhh
Q 025013 117 FSA-QGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLL 195 (259)
Q Consensus 117 F~~-~Gls~~d~VaLsGaHTiG~~hc~~f~~Rl~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~ll 195 (259)
|++ +|||++|||+|+||||||++|| +|+ +..+. ++ .||.+|||+||++|+
T Consensus 145 F~~~~Gl~~~d~VaLsGaHTiG~~hc----~r~---------------------~~~g~---~~-~tp~~fDn~Yy~~ll 195 (250)
T PLN02364 145 FAKQMGLSDKDIVALSGAHTLGRCHK----DRS---------------------GFEGA---WT-SNPLIFDNSYFKELL 195 (250)
T ss_pred HHHhcCCCHHHheeeecceeeccccC----CCC---------------------CCCCC---CC-CCCCccchHHHHHHh
Confidence 997 5999999999999999999999 332 00111 23 689999999999999
Q ss_pred cc--ccccc--chhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 025013 196 NK--KGLLH--SDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPL 244 (259)
Q Consensus 196 ~~--~glL~--SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgvl 244 (259)
.+ +|+|. ||++|+.|++|+.+|++||.|++.|+++|++||+||++|++-
T Consensus 196 ~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 196 SGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred cCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99 89865 999999999999999999999999999999999999999973
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.7e-48 Score=361.36 Aligned_cols=176 Identities=20% Similarity=0.329 Sum_probs=156.0
Q ss_pred hhhhhccC---CCCCCCCChhhHHHHhhcccchhhhhhh-hcCCCCccccCCCCCCccchhccccCCCCCCCCCHHHHHH
Q 025013 40 PILTIIKS---PACTNLSTCFNYYYYFFFGWGNVSLAQL-QFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALIS 115 (259)
Q Consensus 40 ~vi~~~k~---~~cp~~vS~ADiiala~~~~aa~~~AV~-~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~ 115 (259)
++|+.||+ +.| |||||||||| +++||+ +.|||.|+|++||+|++++. +++.||.|+.++++|++
T Consensus 88 ~vvd~lk~~~e~~c---VScADiialA------a~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~ 155 (328)
T cd00692 88 EIVEALRPFHQKHN---VSMADFIQFA------GAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILA 155 (328)
T ss_pred HHHHHHHHHHHhcC---cCHHHHHHHH------HHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHH
Confidence 67777777 445 9999999996 899998 67999999999999999986 45689999999999999
Q ss_pred HHHHcCCChHHHHHHhcCcccccccccccCccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccchHHHHHhh
Q 025013 116 SFSAQGLSLKNMVALAGGHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLL 195 (259)
Q Consensus 116 ~F~~~Gls~~d~VaLsGaHTiG~~hc~~f~~Rl~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~ll 195 (259)
.|+++|||++|||+|+||||||++|. .||+++ .+++| .||.+|||+||+|++
T Consensus 156 ~F~~~Gf~~~E~VaLsGAHTiG~a~~--------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~ll 207 (328)
T cd00692 156 RFADAGFSPDELVALLAAHSVAAQDF--------VDPSIA-------------------GTPFD-STPGVFDTQFFIETL 207 (328)
T ss_pred HHHHcCCCHHHHhhhcccccccccCC--------CCCCCC-------------------CCCCC-CCcchhcHHHHHHHH
Confidence 99999999999999999999999982 266664 25788 699999999999988
Q ss_pred -cccc-------------------cccchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccC
Q 025013 196 -NKKG-------------------LLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIKPLTGSAGQIRINC 255 (259)
Q Consensus 196 -~~~g-------------------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lgvltG~~GeIR~~C 255 (259)
.+++ +|+||++|+.|++|+.+|++||+||++|+++|++||+||++|||. ...+.+|
T Consensus 208 ~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dc 283 (328)
T cd00692 208 LKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDC 283 (328)
T ss_pred HcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccC
Confidence 4555 499999999999999999999999999999999999999999986 3367799
Q ss_pred ccCC
Q 025013 256 RKIN 259 (259)
Q Consensus 256 ~~vN 259 (259)
+.|+
T Consensus 284 s~v~ 287 (328)
T cd00692 284 SDVI 287 (328)
T ss_pred cccC
Confidence 9875
No 9
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=6.9e-47 Score=356.61 Aligned_cols=209 Identities=22% Similarity=0.281 Sum_probs=180.6
Q ss_pred chHHHHHHHHHhhchhhhhhccCCCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhc-------
Q 025013 25 PLVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRA------- 97 (259)
Q Consensus 25 ~~~~~~~~~~~~~~~~vi~~~k~~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~------- 97 (259)
-|.+++..|++|++ .+|..||+||+|+|| +..||+.+|||.|+|.+||.|...+...
T Consensus 111 gL~~a~~~L~pik~----------k~~~~iS~ADL~~La------G~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~ 174 (409)
T cd00649 111 NLDKARRLLWPIKQ----------KYGNKISWADLMILA------GNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEK 174 (409)
T ss_pred hHHHHHHHHHHHHH----------HcCCCccHHHHHHHH------HHHHHHHcCCCcccccCCCCccCCCccccccCcch
Confidence 36667777766664 356679999999996 8999999999999999999999764310
Q ss_pred ----------------------------cccC--CCCCCCCCHHHHHHHHHHcCCChHHHHHH-hcCcccccccccccCc
Q 025013 98 ----------------------------AANT--SIPPPTSNLSALISSFSAQGLSLKNMVAL-AGGHTVGKARCTSFRG 146 (259)
Q Consensus 98 ----------------------------~a~~--~LP~p~~~~~~l~~~F~~~Gls~~d~VaL-sGaHTiG~~hc~~f~~ 146 (259)
.+++ .||+|..++++|++.|++||||++||||| +||||||++||..|.+
T Consensus 175 ~~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~ 254 (409)
T cd00649 175 EWLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPAS 254 (409)
T ss_pred hcccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccc
Confidence 1223 69999999999999999999999999999 5999999999999999
Q ss_pred cccCCCCCCHHHHHHhh--ccCCCCCC-CCccccCC---CCCCcccchHHHHHhhc------------------------
Q 025013 147 HIYNDSNIDTSFARSLQ--QRCPRRGN-DNVLANLD---RQTPTCFDNLYYKNLLN------------------------ 196 (259)
Q Consensus 147 Rl~~dp~ld~~~~~~L~--~~Cp~~~~-~~~~~~lD---~~Tp~~FDn~Yy~~ll~------------------------ 196 (259)
||..||.+++.|++.|+ ..||...+ +...+.+| ..||.+|||+||++|+.
T Consensus 255 rlg~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~ 334 (409)
T cd00649 255 HVGPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGEN 334 (409)
T ss_pred cCCCCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccc
Confidence 99999999999999995 89996432 23345677 47999999999999998
Q ss_pred ------------ccccccchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 025013 197 ------------KKGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKM--GNIKPLTGSAG 249 (259)
Q Consensus 197 ------------~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM--~~lgvltG~~G 249 (259)
+.++|+||++|+.|++|+++|++||+|+++|+++|++||+|| +.+||++--.|
T Consensus 335 ~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 335 TVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 458999999999999999999999999999999999999999 68999886544
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.5e-44 Score=359.73 Aligned_cols=203 Identities=23% Similarity=0.268 Sum_probs=175.9
Q ss_pred hHHHHHHHHHhhchhhhhhccCCCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccch----------
Q 025013 26 LVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTAS---------- 95 (259)
Q Consensus 26 ~~~~~~~~~~~~~~~vi~~~k~~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~---------- 95 (259)
|.+++..|..|++ .||++|||||||+|| +++||+.+|||.|+|.+||+|+..+.
T Consensus 122 Ldka~~lL~pIk~----------kyp~~VS~ADLivLA------G~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~ 185 (716)
T TIGR00198 122 LDKARRLLWPIKK----------KYGNKLSWADLIILA------GTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKE 185 (716)
T ss_pred HHHHHHHHHHHHH----------HCCCceeHHHHHHHH------HHHHHHHhCCCccCCCCCCCCCCCcccccccccccc
Confidence 5666666666664 699999999999996 89999999999999999999995432
Q ss_pred ---------------------------hccccCCCCCCCCCHHHHHHHHHHcCCChHHHHHHh-cCcccccccccccCcc
Q 025013 96 ---------------------------RAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALA-GGHTVGKARCTSFRGH 147 (259)
Q Consensus 96 ---------------------------~~~a~~~LP~p~~~~~~l~~~F~~~Gls~~d~VaLs-GaHTiG~~hc~~f~~R 147 (259)
+..+ ..+|+|..++++|++.|+++|||++|||||+ ||||||++||.+|.+|
T Consensus 186 ~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~-~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~r 264 (716)
T TIGR00198 186 WLTSSREDRESLENPLAATEMGLIYVNPEGP-DGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAEL 264 (716)
T ss_pred hhhccccccccccccchhhhccccccCcccc-cCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCccccc
Confidence 0111 2699999999999999999999999999995 9999999999999999
Q ss_pred ccCCCCCCHHHHHHhhccCCCC---CCCCccccCC---CCCCcccchHHHHHhhcc------------------------
Q 025013 148 IYNDSNIDTSFARSLQQRCPRR---GNDNVLANLD---RQTPTCFDNLYYKNLLNK------------------------ 197 (259)
Q Consensus 148 l~~dp~ld~~~~~~L~~~Cp~~---~~~~~~~~lD---~~Tp~~FDn~Yy~~ll~~------------------------ 197 (259)
|-.||.+++.|++.|+.+||.. +.+...+.+| ..||.+|||+||+||+..
T Consensus 265 lg~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p 344 (716)
T TIGR00198 265 IGPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIP 344 (716)
T ss_pred CCCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccc
Confidence 9889999999999999999852 2222245676 479999999999999974
Q ss_pred ----------cccccchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhhc--CCCCC
Q 025013 198 ----------KGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGN--IKPLT 245 (259)
Q Consensus 198 ----------~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~--lgvlt 245 (259)
.++|+||++|..|++++++|+.||.|++.|+++|++||+||++ +|++.
T Consensus 345 ~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 345 DVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred cccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 6899999999999999999999999999999999999999994 55544
No 11
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=3.8e-42 Score=309.57 Aligned_cols=169 Identities=36% Similarity=0.473 Sum_probs=149.4
Q ss_pred chhhhhhccCC--CCCCCCChhhHHHHhhcccchhhhhhhhc--CCCCccccCCCCCCccch--hccccCCCCCCCCCHH
Q 025013 38 KSPILTIIKSP--ACTNLSTCFNYYYYFFFGWGNVSLAQLQF--GGPSWKVRLGRRDSTTAS--RAAANTSIPPPTSNLS 111 (259)
Q Consensus 38 ~~~vi~~~k~~--~cp~~vS~ADiiala~~~~aa~~~AV~~~--GGP~~~v~~GR~D~~~s~--~~~a~~~LP~p~~~~~ 111 (259)
..++|+.||.+ . |++|||||||+|| +++||+.+ |||.|+|++||+|++++. ...+.+.+|.|+.+++
T Consensus 63 ~~~~l~~ik~~~~~-~~~vS~ADlialA------a~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~ 135 (255)
T cd00314 63 ALRALEPIKSAYDG-GNPVSRADLIALA------GAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSAT 135 (255)
T ss_pred HHHHHHHHHHHcCC-CCcccHHHHHHHH------HHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHH
Confidence 34466666662 2 7899999999996 89999999 999999999999999774 3445667888899999
Q ss_pred HHHHHHHHcCCChHHHHHHh-cCccc-ccccccccCccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccchH
Q 025013 112 ALISSFSAQGLSLKNMVALA-GGHTV-GKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNL 189 (259)
Q Consensus 112 ~l~~~F~~~Gls~~d~VaLs-GaHTi-G~~hc~~f~~Rl~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~ 189 (259)
++++.|+++||+++|||||+ ||||| |++||..|..|+ | .+|..||.+|||+
T Consensus 136 ~~~~~F~~~Gl~~~e~VAL~~GaHti~G~~~~~~~~~~~-----------------~----------~~~~~tp~~fDN~ 188 (255)
T cd00314 136 ELRDKFKRMGLSPSELVALSAGAHTLGGKNHGDLLNYEG-----------------S----------GLWTSTPFTFDNA 188 (255)
T ss_pred HHHHHHHHcCCCHHHHHhhccCCeeccCcccCCCCCccc-----------------C----------CCCCCCCCccchH
Confidence 99999999999999999999 99999 999998877663 1 2344799999999
Q ss_pred HHHHhhccc----------------ccccchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 025013 190 YYKNLLNKK----------------GLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGN 240 (259)
Q Consensus 190 Yy~~ll~~~----------------glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~ 240 (259)
||++++.++ ++|+||++|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 189 yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 189 YFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred HHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 999999988 899999999999999999999999999999999999999984
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=8.6e-41 Score=331.53 Aligned_cols=205 Identities=21% Similarity=0.295 Sum_probs=175.2
Q ss_pred chHHHHHHHHHhhchhhhhhccCCCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchh--------
Q 025013 25 PLVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASR-------- 96 (259)
Q Consensus 25 ~~~~~~~~~~~~~~~~vi~~~k~~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~-------- 96 (259)
-|.+++..|..|++ .++..||.||+|+|| +..||+.+|||.|+|.+||.|...+..
T Consensus 123 gL~ka~~~L~pik~----------ky~~~iS~ADLi~La------G~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~ 186 (726)
T PRK15061 123 NLDKARRLLWPIKQ----------KYGNKISWADLMILA------GNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEK 186 (726)
T ss_pred hHHHHHHHHHHHHH----------HhCCCccHHHHHHHH------HHHHHHHcCCCccCcCCCCCCCcCCccccccCccc
Confidence 46667777766664 356679999999996 899999999999999999999875432
Q ss_pred -------------------------------ccccCCCCCCCCCHHHHHHHHHHcCCChHHHHHHh-cCccccccccccc
Q 025013 97 -------------------------------AAANTSIPPPTSNLSALISSFSAQGLSLKNMVALA-GGHTVGKARCTSF 144 (259)
Q Consensus 97 -------------------------------~~a~~~LP~p~~~~~~l~~~F~~~Gls~~d~VaLs-GaHTiG~~hc~~f 144 (259)
+.+ ..+|+|..++.+|++.|++||||++|||||+ ||||||++||..|
T Consensus 187 ~~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp-~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~ 265 (726)
T PRK15061 187 EWLGGDERYSGERDLENPLAAVQMGLIYVNPEGP-NGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGD 265 (726)
T ss_pred cccccccccccccccccchhhhhccceecCCCCC-CCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCc
Confidence 111 2389999999999999999999999999995 9999999999999
Q ss_pred CccccCCCCCCHHHHHHhh--ccCCCC-CCCCccccCC---CCCCcccchHHHHHhhcc---------------------
Q 025013 145 RGHIYNDSNIDTSFARSLQ--QRCPRR-GNDNVLANLD---RQTPTCFDNLYYKNLLNK--------------------- 197 (259)
Q Consensus 145 ~~Rl~~dp~ld~~~~~~L~--~~Cp~~-~~~~~~~~lD---~~Tp~~FDn~Yy~~ll~~--------------------- 197 (259)
.+||..||.+++.+++.|+ ..||.+ +.+...+.+| ..||.+|||+||++|+.+
T Consensus 266 ~~rlgpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~ 345 (726)
T PRK15061 266 ASHVGPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAA 345 (726)
T ss_pred ccccCCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccc
Confidence 9999889999999999984 899963 2233345577 479999999999999985
Q ss_pred ---------------cccccchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhh--cCCCCCC
Q 025013 198 ---------------KGLLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMG--NIKPLTG 246 (259)
Q Consensus 198 ---------------~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~--~lgvltG 246 (259)
.++|+||++|..|++++++|++||+|+++|+++|++||+||. .+|+++-
T Consensus 346 ~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 346 EDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred cccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhh
Confidence 489999999999999999999999999999999999999994 4666543
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3.1e-35 Score=264.75 Aligned_cols=157 Identities=26% Similarity=0.353 Sum_probs=133.7
Q ss_pred CCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchhccccCCCCCCCCCHHHHHHHHHHcCCChHHHHHHhc
Q 025013 53 LSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASRAAANTSIPPPTSNLSALISSFSAQGLSLKNMVALAG 132 (259)
Q Consensus 53 ~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gls~~d~VaLsG 132 (259)
+|||||||||| +++||+.+|||.|+|++||+|++++.. . .||.|+.++++|++.|+++||+++|||+|+|
T Consensus 97 ~VScADiialA------a~~AV~~~GGP~i~v~~GR~Da~~s~~---~-glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsg 166 (264)
T cd08201 97 RSSMADLIAMG------VVTSVASCGGPVVPFRAGRIDATEAGQ---A-GVPEPQTDLGTTTESFRRQGFSTSEMIALVA 166 (264)
T ss_pred ccCHHHHHHHH------HHHHHHHcCCCeecccccCCCcccccc---c-cCCCCccCHHHHHHHHHHcCCChHHHheeec
Confidence 69999999996 899999999999999999999998864 2 4999999999999999999999999999995
Q ss_pred -CcccccccccccCccccCCCCCCHHHHHHhhccCCCCCCCCccccCCCCCCcccchHHHHHhhccc--c--------cc
Q 025013 133 -GHTVGKARCTSFRGHIYNDSNIDTSFARSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKK--G--------LL 201 (259)
Q Consensus 133 -aHTiG~~hc~~f~~Rl~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~ll~~~--g--------lL 201 (259)
|||||++||..|.+++ +|.. ..+...++| .||.+|||+||.+++.+. + .+
T Consensus 167 gaHTiG~ahc~~f~~~~--~~g~----------------~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~ 227 (264)
T cd08201 167 CGHTLGGVHSEDFPEIV--PPGS----------------VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTT 227 (264)
T ss_pred CCeeeeecccccchhhc--CCcc----------------ccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCc
Confidence 9999999999887764 1100 001245788 699999999999999864 2 46
Q ss_pred cchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 025013 202 HSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGN 240 (259)
Q Consensus 202 ~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~ 240 (259)
.||..+++....+ .++++| +++.|.+..+..++||.+
T Consensus 228 ~sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 228 NSDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred cchhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 8999999866554 577887 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.97 E-value=4.4e-31 Score=240.69 Aligned_cols=178 Identities=20% Similarity=0.219 Sum_probs=139.7
Q ss_pred ccc--hHHHHHHHHHhhchhhhhhccCCCCCCCCChhhHHHHhhcccchhhhhhhhcCC-----CCccccCCCCCCccch
Q 025013 23 KLP--LVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGG-----PSWKVRLGRRDSTTAS 95 (259)
Q Consensus 23 ~~~--~~~~~~~~~~~~~~~vi~~~k~~~cp~~vS~ADiiala~~~~aa~~~AV~~~GG-----P~~~v~~GR~D~~~s~ 95 (259)
+-| |.++|..|++|++...... .=...||.||+|+|| +..||+.+|| |.|++.+||.|.+.+.
T Consensus 69 N~~~~L~~~~~~Le~ik~~~~~~~----~~~~~vS~ADLivLa------G~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~ 138 (297)
T cd08200 69 NEPEELAKVLAVLEGIQKEFNESQ----SGGKKVSLADLIVLG------GCAAVEKAAKDAGVDIKVPFTPGRTDATQEQ 138 (297)
T ss_pred cCcHHHHHHHHHHHHHHHHhcccc----cCCccccHHHHHHHH------hHHHHHHHHhccCCCceeccCCCCCCcccCC
Confidence 457 9999999999986321000 001269999999996 7899999999 9999999999998763
Q ss_pred hccccC---CCCCCC------------CCHHHHHHHHHHcCCChHHHHHHhcCc-ccccccccccCccccCCCCCCHHHH
Q 025013 96 RAAANT---SIPPPT------------SNLSALISSFSAQGLSLKNMVALAGGH-TVGKARCTSFRGHIYNDSNIDTSFA 159 (259)
Q Consensus 96 ~~~a~~---~LP~p~------------~~~~~l~~~F~~~Gls~~d~VaLsGaH-TiG~~hc~~f~~Rl~~dp~ld~~~~ 159 (259)
+++++ .+|.+. ...+.|++.|.++|||++|||||+||| ++|+.|-.+
T Consensus 139 -td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s---------------- 201 (297)
T cd08200 139 -TDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS---------------- 201 (297)
T ss_pred -CCcccccccCCCCcccccccccCCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCC----------------
Confidence 22221 345332 234789999999999999999999998 688877311
Q ss_pred HHhhccCCCCCCCCccccCCCCCCcccchHHHHHhhcc--------------------cc-----cccchhhhhcCcchH
Q 025013 160 RSLQQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNK--------------------KG-----LLHSDQELFNGNSAD 214 (259)
Q Consensus 160 ~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~ll~~--------------------~g-----lL~SD~~L~~d~~t~ 214 (259)
+.+.|+ .+|.+|||.||+||++. .| .+.+|.+|.+|++.+
T Consensus 202 -----------~~G~wT----~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R 266 (297)
T cd08200 202 -----------KHGVFT----DRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELR 266 (297)
T ss_pred -----------CCCCCc----CCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHH
Confidence 123344 58999999999999951 02 267899999999999
Q ss_pred HHHHHHhhC--HHHHHHHHHHHHHHhhcCC
Q 025013 215 FLVKRYAAS--ISVFFKDFARGMIKMGNIK 242 (259)
Q Consensus 215 ~~V~~yA~d--~~~F~~~Fa~Am~KM~~lg 242 (259)
++|+.||.| +++|++||++||+||+++.
T Consensus 267 ~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 267 AVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 999999998 9999999999999999875
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.94 E-value=4.5e-27 Score=234.94 Aligned_cols=171 Identities=22% Similarity=0.235 Sum_probs=136.2
Q ss_pred chHHHHHHHHHhhchhhhhhccCCCCC-CCCChhhHHHHhhcccchhhhhhhhc---CCC--CccccCCCCCCccchhcc
Q 025013 25 PLVSMLIILMKILKSPILTIIKSPACT-NLSTCFNYYYYFFFGWGNVSLAQLQF---GGP--SWKVRLGRRDSTTASRAA 98 (259)
Q Consensus 25 ~~~~~~~~~~~~~~~~vi~~~k~~~cp-~~vS~ADiiala~~~~aa~~~AV~~~---GGP--~~~v~~GR~D~~~s~~~~ 98 (259)
-|.++|..|++|++. .| ..||.||+|+|| +..||+.+ ||| .+++.+||.|++... ++
T Consensus 491 gL~~vl~~Le~Ik~~----------f~~~~vS~ADLivLa------G~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~-td 553 (716)
T TIGR00198 491 RLAKVLAVLEKIQAE----------FAKGPVSLADLIVLG------GGAAVEKAALDAGISVNVPFLPGRVDATQAM-TD 553 (716)
T ss_pred HHHHHHHHHHHHHHH----------cCCCcccHHHHHHHH------HHHHHHHHHHhCCCCcccCcCCCCCccccCC-CC
Confidence 378899999988864 23 269999999996 78899888 898 589999999998764 23
Q ss_pred ccCCCC-----C----------CCCCHHHHHHHHHHcCCChHHHHHHhcC-cccccccccccCccccCCCCCCHHHHHHh
Q 025013 99 ANTSIP-----P----------PTSNLSALISSFSAQGLSLKNMVALAGG-HTVGKARCTSFRGHIYNDSNIDTSFARSL 162 (259)
Q Consensus 99 a~~~LP-----~----------p~~~~~~l~~~F~~~Gls~~d~VaLsGa-HTiG~~hc~~f~~Rl~~dp~ld~~~~~~L 162 (259)
+++..| + .....+.|+++|..+|||++|||||+|| |++|+.|-.+
T Consensus 554 ~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s------------------- 614 (716)
T TIGR00198 554 AESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS------------------- 614 (716)
T ss_pred ccccccCCCCCcccchhccccccCCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCC-------------------
Confidence 333222 1 1224567999999999999999999998 5999988421
Q ss_pred hccCCCCCCCCccccCCCCCCcccchHHHHHhhccc--------------------c---c--ccchhhhhcCcchHHHH
Q 025013 163 QQRCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNKK--------------------G---L--LHSDQELFNGNSADFLV 217 (259)
Q Consensus 163 ~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~ll~~~--------------------g---l--L~SD~~L~~d~~t~~~V 217 (259)
..+.|+ .+|.+|||.||+||++.. | + ..+|.+|.+|++.+++|
T Consensus 615 --------~~G~~T----~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~a 682 (716)
T TIGR00198 615 --------KHGVFT----DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVA 682 (716)
T ss_pred --------CCCCCc----CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHH
Confidence 123343 489999999999999721 2 2 27799999999999999
Q ss_pred HHHhhCH--HHHHHHHHHHHHHhhcCCC
Q 025013 218 KRYAASI--SVFFKDFARGMIKMGNIKP 243 (259)
Q Consensus 218 ~~yA~d~--~~F~~~Fa~Am~KM~~lgv 243 (259)
+.||.|+ ++|++||++||.|+++++-
T Consensus 683 E~YA~dd~~~~F~~DF~~Aw~Klm~ldr 710 (716)
T TIGR00198 683 EVYAQDDAREKFVKDFVAAWTKVMNLDR 710 (716)
T ss_pred HHHhcccccchHHHHHHHHHHHHHhCCC
Confidence 9999997 8999999999999999974
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.94 E-value=8.2e-27 Score=232.14 Aligned_cols=176 Identities=21% Similarity=0.235 Sum_probs=138.7
Q ss_pred hHHHHHHHHHhhchhhhhhccCCCCCCCCChhhHHHHhhcccchhhhhhhhc---CC--CCccccCCCCCCccchhcccc
Q 025013 26 LVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQF---GG--PSWKVRLGRRDSTTASRAAAN 100 (259)
Q Consensus 26 ~~~~~~~~~~~~~~~vi~~~k~~~cp~~vS~ADiiala~~~~aa~~~AV~~~---GG--P~~~v~~GR~D~~~s~~~~a~ 100 (259)
|.++|..|++|++...-.. .-...||.||+|+|| +..||+.+ || |.+++.+||.|++... ++++
T Consensus 499 L~~vl~~LE~Ik~~f~~~~----~~~~~vS~ADLivLa------G~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~-td~e 567 (726)
T PRK15061 499 LAKVLAVLEGIQAEFNAAQ----SGGKKVSLADLIVLG------GNAAVEQAAKAAGHDVTVPFTPGRTDATQEQ-TDVE 567 (726)
T ss_pred HHHHHHHHHHHHHHHhhcc----CCCCceeHHHHHHHH------HHHHHHHHHHhCCCCcccCcCCCCCCcccCC-CCcc
Confidence 7899999999987543211 112369999999996 78889888 68 9999999999998753 3443
Q ss_pred C---CCCCCC------------CCHHHHHHHHHHcCCChHHHHHHhcCc-ccccccccccCccccCCCCCCHHHHHHhhc
Q 025013 101 T---SIPPPT------------SNLSALISSFSAQGLSLKNMVALAGGH-TVGKARCTSFRGHIYNDSNIDTSFARSLQQ 164 (259)
Q Consensus 101 ~---~LP~p~------------~~~~~l~~~F~~~Gls~~d~VaLsGaH-TiG~~hc~~f~~Rl~~dp~ld~~~~~~L~~ 164 (259)
+ .+|.+. ...+.|+++|.++|||+.|||||+||| ++|..|-.+
T Consensus 568 sf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S--------------------- 626 (726)
T PRK15061 568 SFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS--------------------- 626 (726)
T ss_pred cccccCCCCccccccccccCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCC---------------------
Confidence 2 456532 234889999999999999999999997 678777311
Q ss_pred cCCCCCCCCccccCCCCCCcccchHHHHHhhcc----------c----------c---c--ccchhhhhcCcchHHHHHH
Q 025013 165 RCPRRGNDNVLANLDRQTPTCFDNLYYKNLLNK----------K----------G---L--LHSDQELFNGNSADFLVKR 219 (259)
Q Consensus 165 ~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~ll~~----------~----------g---l--L~SD~~L~~d~~t~~~V~~ 219 (259)
..+.|+ .+|.+|||.||+||++- . | + +.+|..|.+|++.+++|+.
T Consensus 627 ------~~G~~T----~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEv 696 (726)
T PRK15061 627 ------KHGVFT----DRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEV 696 (726)
T ss_pred ------CCCCCc----CCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHH
Confidence 122333 48999999999999951 1 1 1 4789999999999999999
Q ss_pred HhhC--HHHHHHHHHHHHHHhhcCCC
Q 025013 220 YAAS--ISVFFKDFARGMIKMGNIKP 243 (259)
Q Consensus 220 yA~d--~~~F~~~Fa~Am~KM~~lgv 243 (259)
||.| +++|++||++||.|+++++-
T Consensus 697 YA~dd~~~kF~~DF~~Aw~Kvmeldr 722 (726)
T PRK15061 697 YASDDAKEKFVRDFVAAWTKVMNLDR 722 (726)
T ss_pred HhcccchhHHHHHHHHHHHHHHhCCC
Confidence 9998 99999999999999999974
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.89 E-value=5.6e-23 Score=197.53 Aligned_cols=193 Identities=20% Similarity=0.267 Sum_probs=151.5
Q ss_pred hhhhccCCCCCCCCChhhHHHHhhcccchhhhhhhhcCCCCccccCCCCCCccchh------------------------
Q 025013 41 ILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGPSWKVRLGRRDSTTASR------------------------ 96 (259)
Q Consensus 41 vi~~~k~~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP~~~v~~GR~D~~~s~~------------------------ 96 (259)
++-+||- .++..||.||+|+|| +..|++.+|++.+.+..||.|-..+..
T Consensus 143 LLWPIKk-KYG~kiSWaDL~iLa------GnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~ 215 (730)
T COG0376 143 LLWPIKK-KYGRKISWADLIILA------GNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLEN 215 (730)
T ss_pred HhhhHhH-hhcccccHhHhhhhh------chhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccC
Confidence 3445554 478899999999995 889999999999999999999988764
Q ss_pred --------------ccccCCCCCCCCCHHHHHHHHHHcCCChHHHHHHh-cCcccccccccccCccccCCCCCCHHHHHH
Q 025013 97 --------------AAANTSIPPPTSNLSALISSFSAQGLSLKNMVALA-GGHTVGKARCTSFRGHIYNDSNIDTSFARS 161 (259)
Q Consensus 97 --------------~~a~~~LP~p~~~~~~l~~~F~~~Gls~~d~VaLs-GaHTiG~~hc~~f~~Rl~~dp~ld~~~~~~ 161 (259)
.++ +..|+|-.+..+++..|++++++.+|.|||+ ||||+|.+|-..-.+.+-.+|.-.+--.+-
T Consensus 216 PlaavqMGLIYVNPEGp-ng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qG 294 (730)
T COG0376 216 PLAAVQMGLIYVNPEGP-NGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQG 294 (730)
T ss_pred chhhheeeeEEeCCCCC-CCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhc
Confidence 223 4589999999999999999999999999997 699999999765444444466544444444
Q ss_pred hh--ccCCCC-CCCCc----cccCCCCCCcccchHHHHHhhccc-----------------------------------c
Q 025013 162 LQ--QRCPRR-GNDNV----LANLDRQTPTCFDNLYYKNLLNKK-----------------------------------G 199 (259)
Q Consensus 162 L~--~~Cp~~-~~~~~----~~~lD~~Tp~~FDn~Yy~~ll~~~-----------------------------------g 199 (259)
|. ..+-.+ |.+.- -+.+. .||.+|||+||.+|+... .
T Consensus 295 lGW~~~~g~G~G~dtitsGlE~~Wt-~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~ 373 (730)
T COG0376 295 LGWANTYGSGKGPDTITSGLEGAWT-TTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPM 373 (730)
T ss_pred cccccccCCCcCcccccccccccCC-CCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCce
Confidence 42 233221 11111 12233 589999999999999731 3
Q ss_pred cccchhhhhcCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCC
Q 025013 200 LLHSDQELFNGNSADFLVKRYAASISVFFKDFARGMIKMGNIK 242 (259)
Q Consensus 200 lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~KM~~lg 242 (259)
+|.+|.+|--||..+++.++|.+|++.|.+.|++||-||..-+
T Consensus 374 MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 374 MLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred eeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 7999999999999999999999999999999999999998654
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.51 E-value=2.6e-14 Score=138.22 Aligned_cols=174 Identities=24% Similarity=0.280 Sum_probs=126.1
Q ss_pred chHHHHHHHHHhhchhhhhhccCCCCCCCCChhhHHHHhhcccchhhhhhhhcCCC--CccccCCCCCCccchhccccC-
Q 025013 25 PLVSMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYFFFGWGNVSLAQLQFGGP--SWKVRLGRRDSTTASRAAANT- 101 (259)
Q Consensus 25 ~~~~~~~~~~~~~~~~vi~~~k~~~cp~~vS~ADiiala~~~~aa~~~AV~~~GGP--~~~v~~GR~D~~~s~~~~a~~- 101 (259)
-|.+||.+|++|+++.. ..||.||+|+|| +.||...|.. .+|- .+++.+||.|++... +++..
T Consensus 508 ~l~kvl~~le~iq~~fn----------kkvSlADlIVL~--G~a~ie~AAk-~aG~~v~VPF~pGR~DA~qeq-tDv~sf 573 (730)
T COG0376 508 ELAKVLAVLEKIQKEFN----------KKVSLADLIVLG--GNAAVEKAAK-AAGFSVTVPFAPGRTDASQEQ-TDVESF 573 (730)
T ss_pred HHHHHHHHHHHHHHHhc----------CccchhHheeec--chHHHHHHHH-hcCceeeeccCCCCcccchhh-cchhhh
Confidence 38899999999998652 469999999997 5544444444 3454 478899999998653 33322
Q ss_pred CCCCC--------------CCCHHHHHHHHHHcCCChHHHHHHhcCccc-ccccccccCccccCCCCCCHHHHHHhhccC
Q 025013 102 SIPPP--------------TSNLSALISSFSAQGLSLKNMVALAGGHTV-GKARCTSFRGHIYNDSNIDTSFARSLQQRC 166 (259)
Q Consensus 102 ~LP~p--------------~~~~~~l~~~F~~~Gls~~d~VaLsGaHTi-G~~hc~~f~~Rl~~dp~ld~~~~~~L~~~C 166 (259)
.+-.| ..+-+-|+++-+-.+||..||++|.||-.+ |.-+
T Consensus 574 ~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~LtapemtVLiGGlRvLg~n~-------------------------- 627 (730)
T COG0376 574 AVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAPEMTVLIGGLRVLGANY-------------------------- 627 (730)
T ss_pred hcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCccceEEEcceEeeccCC--------------------------
Confidence 11111 123456888888899999999999998643 2211
Q ss_pred CCCCCCCccccCCCCCCcccchHHHHHhhcc----------ccc---------------ccchhhhhcCcchHHHHHHHh
Q 025013 167 PRRGNDNVLANLDRQTPTCFDNLYYKNLLNK----------KGL---------------LHSDQELFNGNSADFLVKRYA 221 (259)
Q Consensus 167 p~~~~~~~~~~lD~~Tp~~FDn~Yy~~ll~~----------~gl---------------L~SD~~L~~d~~t~~~V~~yA 221 (259)
++....+..| .|.++.|.||.||++- +++ -..|..+-+++..+.+.+.||
T Consensus 628 ---g~s~~GVfT~--~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa 702 (730)
T COG0376 628 ---GGSKHGVFTD--RPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYA 702 (730)
T ss_pred ---CCCccceecc--CcccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHh
Confidence 2223344444 6899999999999972 111 256888888999999999999
Q ss_pred hC--HHHHHHHHHHHHHHhhcCCC
Q 025013 222 AS--ISVFFKDFARGMIKMGNIKP 243 (259)
Q Consensus 222 ~d--~~~F~~~Fa~Am~KM~~lgv 243 (259)
.+ ++.|.+||.+||.|..++.-
T Consensus 703 ~dda~ekFv~DFvaaw~kVMn~DR 726 (730)
T COG0376 703 SDDAKEKFVKDFVAAWTKVMNLDR 726 (730)
T ss_pred ccchHHHHHHHHHHHHHHHhcccc
Confidence 75 79999999999999998863
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=73.38 E-value=29 Score=32.99 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=38.6
Q ss_pred cCCCCccccCCCCCCccchhccccCCCC---CCCCCHHHHHHHHHHcCC----------ChHHHHHHhcCccc
Q 025013 77 FGGPSWKVRLGRRDSTTASRAAANTSIP---PPTSNLSALISSFSAQGL----------SLKNMVALAGGHTV 136 (259)
Q Consensus 77 ~GGP~~~v~~GR~D~~~s~~~~a~~~LP---~p~~~~~~l~~~F~~~Gl----------s~~d~VaLsGaHTi 136 (259)
+|-..+..+.||.|.+.-.........+ ++-..+.++.+.|+..|+ +.+|+..|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 5767789999998665322111111111 112357788888888886 46888999998865
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=72.47 E-value=3.4 Score=31.32 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 025013 226 VFFKDFARGMIKMGNIKPL 244 (259)
Q Consensus 226 ~F~~~Fa~Am~KM~~lgvl 244 (259)
.+.++|..||.||+.||.-
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 4678999999999999763
No 21
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=57.37 E-value=98 Score=29.25 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=39.5
Q ss_pred hcCCCCccccCCCCCCccchhccccC---CCCCCCCCHHHHHHHHHHcCCC----------hHHHHHHhcCccc
Q 025013 76 QFGGPSWKVRLGRRDSTTASRAAANT---SIPPPTSNLSALISSFSAQGLS----------LKNMVALAGGHTV 136 (259)
Q Consensus 76 ~~GGP~~~v~~GR~D~~~s~~~~a~~---~LP~p~~~~~~l~~~F~~~Gls----------~~d~VaLsGaHTi 136 (259)
.+|-..+..+.||-|-+.-....... ..-++-..+.++.+.|++.|+. .+|+.+|.|+|.+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~~ 240 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDRL 240 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCeE
Confidence 35778899999998775322111000 1112335678888899888874 6788888888864
No 22
>PRK05269 transaldolase B; Provisional
Probab=53.18 E-value=1.4e+02 Score=28.06 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=38.9
Q ss_pred hcCCCCccccCCCCCCccchhccccC---CCCCCCCCHHHHHHHHHHcCCC----------hHHHHHHhcCccc
Q 025013 76 QFGGPSWKVRLGRRDSTTASRAAANT---SIPPPTSNLSALISSFSAQGLS----------LKNMVALAGGHTV 136 (259)
Q Consensus 76 ~~GGP~~~v~~GR~D~~~s~~~~a~~---~LP~p~~~~~~l~~~F~~~Gls----------~~d~VaLsGaHTi 136 (259)
.+|-..+..+.||-|...-...+... .--++-..+.++.+.|+..|+. ..++..|.|+|++
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 35777899999999865322110000 0112334678888899888874 5778888888865
No 23
>PRK12346 transaldolase A; Provisional
Probab=51.74 E-value=1.5e+02 Score=27.97 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=40.0
Q ss_pred hcCCCCccccCCCCCCccchhccccCCCCC----CCCCHHHHHHHHHHcCC----------ChHHHHHHhcCccc
Q 025013 76 QFGGPSWKVRLGRRDSTTASRAAANTSIPP----PTSNLSALISSFSAQGL----------SLKNMVALAGGHTV 136 (259)
Q Consensus 76 ~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~----p~~~~~~l~~~F~~~Gl----------s~~d~VaLsGaHTi 136 (259)
.+|-..+..+.||.|.+.-..... ..++. +-..+.++.+.|++.|+ +.+|+.+|.|.|.+
T Consensus 168 ~AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 168 EAGVFLISPFVGRIYDWYQARKPM-DPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred HcCCCEEEecccHHHHhhhhcccc-ccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 367788999999998754321111 11211 23457888888988886 36888899998865
No 24
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=50.48 E-value=2.1e+02 Score=27.84 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=39.4
Q ss_pred cCCCCccccCCCCCCccchhccccCCCCCCC----CCHHHHHHHHHHcCCC----------hHHHHHHhcCccc
Q 025013 77 FGGPSWKVRLGRRDSTTASRAAANTSIPPPT----SNLSALISSFSAQGLS----------LKNMVALAGGHTV 136 (259)
Q Consensus 77 ~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~----~~~~~l~~~F~~~Gls----------~~d~VaLsGaHTi 136 (259)
+|-..+..+.||.|.+.-..... ..+|... ..+.++.+.|+..|+. ..++..|+|+|.+
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~-~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGR-DSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCC-CccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHHHHHHHHCCCee
Confidence 57778999999988754322111 1244332 2578888888887763 6788888888864
No 25
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=49.28 E-value=7.8 Score=32.17 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHcCCChHHHHH-HhcCccccccc
Q 025013 106 PTSNLSALISSFSAQGLSLKNMVA-LAGGHTVGKAR 140 (259)
Q Consensus 106 p~~~~~~l~~~F~~~Gls~~d~Va-LsGaHTiG~~h 140 (259)
-.+++.+.+-.|++|||++.++-+ |--+|-||+++
T Consensus 29 ~~ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 29 TADDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred CHHHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 345677778899999999998754 45899999886
No 26
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=40.02 E-value=1.4e+02 Score=28.12 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=37.9
Q ss_pred cCCCCccccCCCCCCccchhccccCCCC----CCCCCHHHHHHHHHHcCCC----------hHHHHHHhcCccc
Q 025013 77 FGGPSWKVRLGRRDSTTASRAAANTSIP----PPTSNLSALISSFSAQGLS----------LKNMVALAGGHTV 136 (259)
Q Consensus 77 ~GGP~~~v~~GR~D~~~s~~~~a~~~LP----~p~~~~~~l~~~F~~~Gls----------~~d~VaLsGaHTi 136 (259)
+|-..+..+.||.|-+.-..... ...+ ++-..+.++.+.|+..|+. ..|+..|.|+|.+
T Consensus 168 AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn~~~v~~laG~d~~ 240 (313)
T cd00957 168 AGVTLISPFVGRILDWYKKHSGD-KAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILALAGCDYL 240 (313)
T ss_pred cCCCEEEeecchHHHhhhhcccc-ccCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCeE
Confidence 56677899999998653221110 0111 1224578888889888874 6788888888754
No 27
>PF12493 DUF3709: Protein of unknown function (DUF3709); InterPro: IPR022178 This domain family is found in bacteria, and is approximately 30 amino acids in length. There are two conserved sequence motifs: RCLMK and LIEL.
Probab=33.62 E-value=19 Score=22.53 Aligned_cols=19 Identities=42% Similarity=1.382 Sum_probs=13.1
Q ss_pred eeeeecccccccCcccccc
Q 025013 4 CCFVCRYSCHCRTRFSCCC 22 (259)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (259)
|+.-|.+.|||-...+|-|
T Consensus 9 cv~rckfq~~CLIel~~~c 27 (33)
T PF12493_consen 9 CVCRCKFQCHCLIELSCPC 27 (33)
T ss_pred eEEEEeeeehhhHhhccce
Confidence 5566777777777766665
No 28
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=33.02 E-value=14 Score=17.51 Aligned_cols=9 Identities=67% Similarity=1.685 Sum_probs=7.4
Q ss_pred eeeeecccc
Q 025013 4 CCFVCRYSC 12 (259)
Q Consensus 4 ~~~~~~~~~ 12 (259)
||.|=||-|
T Consensus 2 ccpvirycc 10 (11)
T PF08097_consen 2 CCPVIRYCC 10 (11)
T ss_pred Ccchhheec
Confidence 888888876
No 29
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=27.83 E-value=82 Score=22.66 Aligned_cols=30 Identities=20% Similarity=0.015 Sum_probs=18.0
Q ss_pred HHHHHHHHhhchhhhhhccCCCCCCCCChhhHHHHh
Q 025013 28 SMLIILMKILKSPILTIIKSPACTNLSTCFNYYYYF 63 (259)
Q Consensus 28 ~~~~~~~~~~~~~vi~~~k~~~cp~~vS~ADiiala 63 (259)
+.|..|++.++ =+...+...+|.|||..+.
T Consensus 35 ~~l~~le~~l~------~~~~l~G~~~t~ADi~~~~ 64 (95)
T PF00043_consen 35 RYLEVLEKRLK------GGPYLVGDKLTIADIALFP 64 (95)
T ss_dssp HHHHHHHHHHH------TSSSSSBSS-CHHHHHHHH
T ss_pred HHHHHHHHHHc------CCCeeeccCCchhHHHHHH
Confidence 44555555554 1224567799999998774
No 30
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=26.52 E-value=59 Score=24.48 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCChHHHHHHhcCc
Q 025013 111 SALISSFSAQGLSLKNMVALAGGH 134 (259)
Q Consensus 111 ~~l~~~F~~~Gls~~d~VaLsGaH 134 (259)
+.|-..|.+.||+..||-.|+.+.
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEAD 34 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHG
T ss_pred CcHHHHHHHcCCCHHHHHHHHhcc
Confidence 678889999999999999998655
No 31
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=24.23 E-value=83 Score=26.37 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHH--cCCChHHHHHHhcCc-cccc
Q 025013 105 PPTSNLSALISSFSA--QGLSLKNMVALAGGH-TVGK 138 (259)
Q Consensus 105 ~p~~~~~~l~~~F~~--~Gls~~d~VaLsGaH-TiG~ 138 (259)
.|+.++++|++.+.. .+++.+|.+.++.+| .||.
T Consensus 31 rPf~s~~~L~~a~~~~~~~~~~~~~~~~l~aHP~lg~ 67 (159)
T PF09349_consen 31 RPFASVDALIAAADEAVRSLSEEDKLEALRAHPRLGE 67 (159)
T ss_dssp GS-SSHHHHHHHHHHHHHCS-HHHHHHHHHTS--TTS
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHhCccccc
Confidence 589999999999975 699999999999999 3443
No 32
>PLN02161 beta-amylase
Probab=23.70 E-value=86 Score=31.68 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=22.4
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhh-----cCCCCCCCCCcccc
Q 025013 217 VKRYAASISVFFKDFARGMIKMG-----NIKPLTGSAGQIRI 253 (259)
Q Consensus 217 V~~yA~d~~~F~~~Fa~Am~KM~-----~lgvltG~~GeIR~ 253 (259)
++.|. .|+..|...|.-.. +|.|=-|+.||.|=
T Consensus 235 lq~Y~----Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GELRY 272 (531)
T PLN02161 235 VQCYE----DFMLSFSTKFEPYIGNVIEEISIGLGPSGELRY 272 (531)
T ss_pred HHHHH----HHHHHHHHHHHHHhcCceEEEEeccccCccccC
Confidence 67785 36777777766653 45555689999983
No 33
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=23.24 E-value=66 Score=24.68 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=20.5
Q ss_pred HhhchhhhhhccCCCCCCCC--------ChhhHHHHh
Q 025013 35 KILKSPILTIIKSPACTNLS--------TCFNYYYYF 63 (259)
Q Consensus 35 ~~~~~~vi~~~k~~~cp~~v--------S~ADiiala 63 (259)
++--++||+.++...|+... ||+|.|+-+
T Consensus 54 G~~~~~ii~~L~gi~~~~~~~~~~~~~~S~~D~Ia~~ 90 (95)
T PF12637_consen 54 GVPPEEIIDQLRGIRCGPSGTVGGSRVTSCPDAIAKA 90 (95)
T ss_pred CCCHHHHHHHhcCCCCCCCCccCCCccCcHHHHHHHH
Confidence 34456788888886665544 999999763
No 34
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=22.22 E-value=32 Score=24.67 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=20.0
Q ss_pred CCCCCCCCHHHHHHHHHHcCCChHHHHHH
Q 025013 102 SIPPPTSNLSALISSFSAQGLSLKNMVAL 130 (259)
Q Consensus 102 ~LP~p~~~~~~l~~~F~~~Gls~~d~VaL 130 (259)
.+--....+.+++-.++++|+++.++=+.
T Consensus 25 W~~~~~~eVe~~I~klakkG~tpSqIG~i 53 (60)
T PF08069_consen 25 WLKYSPEEVEELIVKLAKKGLTPSQIGVI 53 (60)
T ss_dssp T--S-HHHHHHHHHHHCCTTHCHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHcCCCHHHhhhh
Confidence 33333456788888999999999886444
Done!