BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025014
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4QQQ4|RM45_XENTR 39S ribosomal protein L45, mitochondrial OS=Xenopus tropicalis
GN=mrpl45 PE=2 SV=1
Length = 309
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
++I+ I++PY P E +++G ++ + S AI K+++ S ++
Sbjct: 76 INIACTAGIFDPYIPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A +L+ + + D+ L VTE+ Y + R + + ++ W +E I
Sbjct: 135 KTFPEKAQELFIAAHQCLTKFDRHELHTLVTERCYPEMV-----RGNRYRTIQWSFVESI 189
Query: 222 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQ 254
R ++ R V + +L + Q+T+ KQ
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQ 220
>sp|Q9D0Q7|RM45_MOUSE 39S ribosomal protein L45, mitochondrial OS=Mus musculus GN=Mrpl45
PE=2 SV=1
Length = 306
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
+ ++ I++PY P E +++G + + + S AI K+R+ + +
Sbjct: 76 IHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQRTERLRKNAASQLAIRKIREFDANFKT 134
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A D++ E + + N D L VTE + + ++K + +V W +E +
Sbjct: 135 KDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWDLK-----YKTVRWGFVESL 189
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQ 254
+ + R G+ + + ++ Q+T+ +Q
Sbjct: 190 EPAQVVHVRCSGL--VNQSNMYGQVTVRLHTRQ 220
>sp|P59480|RM45_XENLA 39S ribosomal protein L45, mitochondrial OS=Xenopus laevis
GN=mrpl45 PE=2 SV=1
Length = 309
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 104 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 161
++I+ I +PY P E +++G ++ + S AI K+++ S ++
Sbjct: 76 INIACTAGILDPYVPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134
Query: 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 221
+ F +A +++ + + N D+ L VTE+ Y + R + + ++ W +E I
Sbjct: 135 KTFPEKAQEIFITAHKYLTNFDRHKLHTLVTERCYPEMV-----RGNRYRTIRWSFVESI 189
Query: 222 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQ 254
R ++ R V + +L + Q+T+ KQ
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQ 220
>sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168)
GN=yuxL PE=3 SV=3
Length = 657
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 4 LRRLLTNHALNRTVGVSESAYLLGSSRS--YSSGVSIVPEIYSQNISSCLCKDHGALPWT 61
+++L+T + V V++ Y +R+ S V+ + Y+ NI K G++PWT
Sbjct: 1 MKKLITADDITAIVSVTDPQYAPDGTRAAYVKSQVNQEKDSYTSNIWIYETKTGGSVPWT 60
Query: 62 RGSTMTLRSSLAP--KSLLYLNEKRFATAQ----PKAPAQARQMGALKVSISSP 109
G + +P ++L +++++ AQ +AR++ + +S P
Sbjct: 61 HGEKRSTDPRWSPDGRTLAFISDREGDAAQLYIMSTEGGEARKLTDIPYGVSKP 114
>sp|Q3T142|RM45_BOVIN 39S ribosomal protein L45, mitochondrial OS=Bos taurus GN=MRPL45
PE=2 SV=1
Length = 306
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 129 FTRDGWRRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTS 186
+++G + + + + S +I ++++S + + F +A D++ E + + N D
Sbjct: 100 LSKEGLAQRTERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDR 159
Query: 187 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEP--IIKMR 225
L VTE + + +IK + WS V E +EP ++++R
Sbjct: 160 LHTLVTENCFPDMVWDIKYKTVSWSFV--ESLEPPQVVQVR 198
>sp|B3QUY6|TRPD_CHLT3 Anthranilate phosphoribosyltransferase OS=Chloroherpeton thalassium
(strain ATCC 35110 / GB-78) GN=trpD PE=3 SV=1
Length = 344
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 176 NTLMANGDKTSLRKAVTEKMYS--------------ALKNEIKQRESMWSSVNWELIEPI 221
+ L A G K L K TE+++ A+KN R+ + + ++ P+
Sbjct: 122 DVLEAMGFKIDLPKKETEELFKETGFVFLFAPIFHKAMKNVAPVRKELGLRTIFNMLGPL 181
Query: 222 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQ 254
I + ++IGV DL +F Q+ +F AK
Sbjct: 182 INPARTQRQIIGVYSKDLTGMFAQVLRQFDAKH 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,487,211
Number of Sequences: 539616
Number of extensions: 3269590
Number of successful extensions: 9026
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 9019
Number of HSP's gapped (non-prelim): 23
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)