Query 025014
Match_columns 259
No_of_seqs 152 out of 221
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cw9_A Translocase of inner mi 99.8 1.7E-20 5.8E-25 162.6 12.3 108 143-259 34-144 (194)
2 3qk9_A Mitochondrial import in 99.7 2.4E-18 8.1E-23 153.0 9.3 109 144-259 58-169 (222)
3 3dmc_A NTF2-like protein; stru 71.3 0.84 2.9E-05 35.7 0.0 32 164-195 10-41 (134)
4 3en8_A Uncharacterized NTF-2 l 46.6 4.3 0.00015 31.2 0.1 30 166-195 5-34 (128)
5 3fgy_A Uncharacterized NTF2-li 45.3 6 0.00021 29.5 0.8 29 167-195 6-34 (135)
6 3h3h_A Uncharacterized snoal-l 44.0 6.5 0.00022 29.3 0.7 30 166-195 8-37 (122)
7 3f40_A Uncharacterized NTF2-li 43.1 6.8 0.00023 29.6 0.7 28 168-195 8-35 (114)
8 1ohp_A Steroid delta-isomerase 39.7 7.3 0.00025 27.9 0.4 30 166-195 5-34 (125)
9 1tuh_A BAL32A, hypothetical pr 39.0 9.1 0.00031 29.7 0.9 29 167-195 30-58 (156)
10 1oh0_A Steroid delta-isomerase 37.7 10 0.00034 27.9 0.9 30 166-195 7-36 (131)
11 3dm8_A Uncharacterized protein 36.3 8.2 0.00028 29.8 0.2 28 168-195 6-33 (143)
12 3fh1_A Uncharacterized NTF2-li 36.2 9.3 0.00032 28.7 0.5 30 166-195 17-46 (129)
13 3i0y_A Putative polyketide cyc 35.8 9.1 0.00031 28.6 0.4 28 168-195 10-37 (140)
14 3ec9_A Uncharacterized NTF2-li 34.9 9.5 0.00033 28.8 0.4 28 168-195 14-41 (140)
15 3flj_A Uncharacterized protein 34.9 3.7 0.00013 33.9 -2.1 33 163-195 15-47 (155)
16 3sxm_A Transcriptional regulat 34.6 1E+02 0.0036 22.8 6.4 41 163-203 94-134 (140)
17 3ebt_A Uncharacterized NTF2-li 34.5 11 0.00036 28.0 0.6 28 168-195 5-32 (132)
18 2bng_A MB2760; epoxide hydrola 34.3 12 0.00041 28.7 0.9 29 167-195 16-44 (149)
19 1nww_A Limonene-1,2-epoxide hy 33.1 13 0.00044 28.2 0.9 27 169-195 25-51 (149)
20 2r4i_A Uncharacterized protein 32.7 15 0.00051 26.6 1.1 30 166-195 6-35 (123)
21 3mso_A Steroid delta-isomerase 32.6 6.7 0.00023 30.9 -0.9 30 166-195 9-38 (143)
22 1z1s_A Hypothetical protein PA 31.8 13 0.00044 29.3 0.7 29 168-196 25-53 (163)
23 1s5a_A Hypothetical protein YE 29.8 14 0.00048 27.8 0.6 29 167-195 11-39 (150)
24 3d9r_A Ketosteroid isomerase-l 29.8 18 0.00062 26.5 1.2 29 167-195 12-40 (135)
25 3f8x_A Putative delta-5-3-keto 29.5 8.3 0.00028 31.0 -0.8 31 165-195 19-49 (148)
26 3u7d_B Protein HEG homolog 1; 29.2 20 0.00069 21.2 1.1 18 47-64 2-19 (26)
27 3g8z_A Protein of unknown func 29.1 14 0.00046 28.7 0.4 29 167-195 21-49 (148)
28 2r25_A Phosphorelay intermedia 28.5 66 0.0023 26.9 4.6 31 161-191 32-63 (167)
29 3f7x_A Putative polyketide cyc 28.3 14 0.00049 28.8 0.4 30 167-196 21-50 (151)
30 4hyz_A Uncharacterized protein 27.2 2E+02 0.007 21.7 10.3 89 157-256 9-109 (114)
31 3ihu_A Transcriptional regulat 26.3 1.8E+02 0.0061 23.8 7.0 39 161-199 175-213 (222)
32 3ff2_A Uncharacterized cystati 26.2 17 0.00057 26.7 0.4 27 169-195 5-31 (117)
33 2rcd_A Uncharacterized protein 26.0 41 0.0014 25.1 2.7 30 165-194 13-42 (129)
34 2f86_B Hypothetical protein K1 25.4 21 0.00072 28.3 0.9 29 167-195 13-41 (143)
35 3fsd_A NTF2-like protein of un 25.2 24 0.00081 26.8 1.1 29 167-195 15-43 (134)
36 2k54_A Protein ATU0742; protei 24.8 21 0.00072 26.2 0.8 28 168-195 5-32 (123)
37 2ux0_A Calcium-calmodulin depe 24.2 31 0.0011 25.9 1.7 29 166-194 13-41 (143)
38 2w9y_A CE-FAR-7, fatty acid/re 24.1 74 0.0025 26.1 4.0 47 157-205 78-129 (140)
39 3f14_A Uncharacterized NTF2-li 23.4 9.2 0.00032 28.3 -1.5 24 172-195 6-29 (112)
40 2gex_A SNOL; alpha+beta barrel 22.9 24 0.00081 27.1 0.7 29 167-195 5-33 (152)
41 3hx8_A MLR2180 protein, putati 22.5 24 0.00083 25.4 0.7 30 166-195 6-35 (129)
42 3f7s_A Uncharacterized NTF2-li 22.2 25 0.00086 26.5 0.7 30 166-195 8-37 (142)
43 3g16_A Uncharacterized protein 21.8 25 0.00087 28.7 0.7 29 168-196 12-40 (156)
44 2a15_A Hypothetical protein RV 21.4 28 0.00096 25.9 0.9 29 167-195 8-36 (139)
45 2a0b_A HPT domain; sensory tra 21.4 1.2E+02 0.004 22.9 4.5 28 162-189 34-61 (125)
46 3sxy_A Transcriptional regulat 21.3 2E+02 0.0067 23.5 6.2 43 162-204 168-210 (218)
47 2hs5_A Putative transcriptiona 20.8 2.6E+02 0.009 23.3 7.1 39 163-201 189-227 (239)
48 2gey_A ACLR protein; alpha+bet 20.1 26 0.00089 27.2 0.4 28 167-194 5-32 (158)
No 1
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=99.83 E-value=1.7e-20 Score=162.63 Aligned_cols=108 Identities=15% Similarity=0.210 Sum_probs=101.5
Q ss_pred HhhhhHHHHHHHHc--CCCChhhhHHHHHHH-HHHHHHHHhcCCHHHHHHhhhHHHHHHHHHHHHhhhccCCeEEEEEec
Q 025014 143 LELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE 219 (259)
Q Consensus 143 ~~~ks~~al~kIrk--~~F~~~~Fl~gA~~a-Y~~I~~AfA~GDr~~Lr~LvTe~vy~~f~~~Ik~Re~~~etv~w~fVe 219 (259)
.+...+.+|++|++ |+||++.|+++|+++ |.+|++|+++||.+.|+++||++||+.|+.+|++|+.+|.+.++++|
T Consensus 34 ~~s~~~~~l~~i~~~dp~Fd~~~Fl~~ak~~iy~~Iq~A~~~gD~~~Lr~~~t~~~~~~~~~~i~~r~~~g~~~~~~~v- 112 (194)
T 2cw9_A 34 SKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRIL- 112 (194)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEEE-
T ss_pred CCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhcCHHHHHHHHHHHHHHHHCCCccccEEE-
Confidence 46678899999999 999999999999998 99999999999999999999999999999999999999999999998
Q ss_pred ccccceEEEEEEeecccCCCCCeEEEEEEEEEeeEeeccC
Q 025014 220 PIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQVNCPY 259 (259)
Q Consensus 220 sIe~~rVV~ARl~~~~~kd~~n~~AQVTVRf~S~Q~~AiY 259 (259)
.|+.++|++|++.+ ..++|||||+++|+.++|
T Consensus 113 ~i~~~el~~a~~~~--------~~~~itV~f~~~~i~~~r 144 (194)
T 2cw9_A 113 DIDNVDLAMGKMVE--------QGPVLIITFQAQLVMVVR 144 (194)
T ss_dssp EEEEEEEEEEEEET--------TEEEEEEEEEEEEECEEE
T ss_pred EecccEEEEEEEeC--------CeeEEEEEEEEEEEEEEE
Confidence 79999999999863 359999999999998875
No 2
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=99.75 E-value=2.4e-18 Score=152.99 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=96.3
Q ss_pred hhhhHHHHHHHHc--CCCChhhhHHHHHHH-HHHHHHHHhcCCHHHHHHhhhHHHHHHHHHHHHhhhccCCeEEEEEecc
Q 025014 144 ELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEP 220 (259)
Q Consensus 144 ~~ks~~al~kIrk--~~F~~~~Fl~gA~~a-Y~~I~~AfA~GDr~~Lr~LvTe~vy~~f~~~Ik~Re~~~etv~w~fVes 220 (259)
....+.+|+.|++ |+|++.+|+++|+.+ |.||++||++||.+.|+++|++++|..|..+|++|+++|.+.+.++| .
T Consensus 58 ~te~a~~l~~Ik~~DPsF~~~~Fl~~a~~ai~p~Il~Af~~GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~d~~il-~ 136 (222)
T 3qk9_A 58 ETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRIL-D 136 (222)
T ss_dssp --CCHHHHTTCC-----CCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEECCEEE-E
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEeeeeEe-e
Confidence 3445688999999 999999999999999 56899999999999999999999999999999999999999999998 8
Q ss_pred cccceEEEEEEeecccCCCCCeEEEEEEEEEeeEeeccC
Q 025014 221 IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQVNCPY 259 (259)
Q Consensus 221 Ie~~rVV~ARl~~~~~kd~~n~~AQVTVRf~S~Q~~AiY 259 (259)
|+...|++|++.+ .+..+.|||||.++|+.+++
T Consensus 137 I~~vdI~~a~~~~------~~~~p~itV~f~aq~i~~~r 169 (222)
T 3qk9_A 137 IRGVEIVSAKLLA------PQDIPVLVVGCRAQEINLYR 169 (222)
T ss_dssp EEEEEEEEEEECS------SSCCEEEEEEEEEEEECCEE
T ss_pred ecceEEEEEEEec------CCCceEEEEEEEEEEEEEEE
Confidence 9999999999853 35789999999999998864
No 3
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=71.29 E-value=0.84 Score=35.68 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 164 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 164 Fl~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
=.+.++++++....|++.||.+.|.+|++|++
T Consensus 10 ~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~ 41 (134)
T 3dmc_A 10 TLKVAHQGFEFFTQGLATGEWQKFLDMLTEDF 41 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCE
Confidence 35678999999999999999999999998754
No 4
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=46.61 E-value=4.3 Score=31.24 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 166 TEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 166 ~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
+..+++...-..||++||.+.|..|++|++
T Consensus 5 ~~~~~~v~~~~~a~~~~D~~~l~~llaeD~ 34 (128)
T 3en8_A 5 EKIREALNAHWQASAAGDFDAEHDIYDDDA 34 (128)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhcCCCE
Confidence 346677788889999999999999999876
No 5
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=45.29 E-value=6 Score=29.55 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
..+++.+...+|+.+||.+.|..|+++++
T Consensus 6 ~~~~~v~~~~~a~~~~d~~~~~~l~a~D~ 34 (135)
T 3fgy_A 6 ENVQIVKDFFAAMGRGDKKGLLAVSAEDI 34 (135)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHTEEEEE
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHhcCCCe
Confidence 45677788888999999999999988774
No 6
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=44.01 E-value=6.5 Score=29.30 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 166 TEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 166 ~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
+.++++...-.+|+.++|.+.|..|++|++
T Consensus 8 ~~~~~~~~~~~~a~n~~D~~~l~~l~a~D~ 37 (122)
T 3h3h_A 8 AFAQQFSREWIDAWNAHDLDAILSHYADGF 37 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHhcCCCE
Confidence 456788888899999999999999987654
No 7
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=43.05 E-value=6.8 Score=29.61 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 168 AVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 168 A~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
++++-+.-..|+..||.+.|..||++++
T Consensus 8 ~~~~v~~f~~A~~~gD~~~l~~lla~Dv 35 (114)
T 3f40_A 8 TRDLVLEFIHALNTENFPAAKKRLNENF 35 (114)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCe
Confidence 3455555678999999999999999875
No 8
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=39.69 E-value=7.3 Score=27.86 Aligned_cols=30 Identities=7% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 166 TEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 166 ~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
+..+++.+....|+.+||.+.|..|++|++
T Consensus 5 ~~~~~~v~~~~~a~~~~D~~~~~~l~a~D~ 34 (125)
T 1ohp_A 5 EHMTAVVQRYVAALNAGDLDGIVALFADDA 34 (125)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHcCCCe
Confidence 345667777788999999999999999874
No 9
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=38.99 E-value=9.1 Score=29.67 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
..+++.+...+|+.+||.+.|..|+++++
T Consensus 30 ~~~~~v~~~~~a~~~gD~~~l~~l~a~D~ 58 (156)
T 1tuh_A 30 QNAETVRRGYAAFNSGDMKTLTELFDENA 58 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHhcCCCE
Confidence 34566677778999999999999988763
No 10
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=37.68 E-value=10 Score=27.88 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 166 TEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 166 ~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
+..+++......|+.+||.+.|..|+++++
T Consensus 7 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~ 36 (131)
T 1oh0_A 7 QEVQGLMARYIELVDVGDIEAIVQMYADDA 36 (131)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHcCCCE
Confidence 345667777788999999999999999875
No 11
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=36.33 E-value=8.2 Score=29.78 Aligned_cols=28 Identities=4% Similarity=0.215 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 168 AVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 168 A~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
++++.+...+|+++||.+.|..|+++++
T Consensus 6 ~~~~v~~~~~a~~~gD~~~l~~l~a~Dv 33 (143)
T 3dm8_A 6 LWRFSRALHRALNDRQTEELATIIDDNI 33 (143)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHCCCHHHHHHhcCCCe
Confidence 4556677778999999999999987765
No 12
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=36.19 E-value=9.3 Score=28.71 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 166 TEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 166 ~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
+..+++.+...+|+.+||.+.|..|+++++
T Consensus 17 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~ 46 (129)
T 3fh1_A 17 EQTAEIMRRFNDVFQLHDPAALPELIAEEC 46 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHEEEEE
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHhcCCCE
Confidence 345667777778999999999999998765
No 13
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=35.78 E-value=9.1 Score=28.64 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 168 AVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 168 A~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
++++.+...+|+.+||.+.|..|+++++
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~ 37 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDV 37 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcE
Confidence 5567777789999999999999998875
No 14
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=34.92 E-value=9.5 Score=28.76 Aligned_cols=28 Identities=4% Similarity=0.105 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 168 AVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 168 A~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
.+++.+...+|+.+||.+.|..|+++++
T Consensus 14 ~~~~v~~~~~a~~~gD~~~~~~l~a~D~ 41 (140)
T 3ec9_A 14 PYQIVADHYAASDRHDPAAMMADIAPAI 41 (140)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCe
Confidence 3566677778999999999999998875
No 15
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=34.88 E-value=3.7 Score=33.89 Aligned_cols=33 Identities=12% Similarity=0.339 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 163 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 163 ~Fl~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
-+.+|+++.-+.-++|++.||.+.|.+|++|+|
T Consensus 15 ~~~~~~~~~v~~f~~A~~~gD~~aL~~LlA~Dv 47 (155)
T 3flj_A 15 LYFQGMHPTIARMQEVVAKGDESLIHALLAEDV 47 (155)
T ss_dssp CTTTTCCHHHHHHHHHHTTTCHHHHHTTEEEEE
T ss_pred hhhhhHHHHHHHHHHHHHhCCHHHHHHhcCCCE
Confidence 355677888888899999999999999998764
No 16
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=34.56 E-value=1e+02 Score=22.79 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHhhhHHHHHHHHHHH
Q 025014 163 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 203 (259)
Q Consensus 163 ~Fl~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~vy~~f~~~I 203 (259)
.....+.+-...|++|+.+||.+..+.++.+++-.....-+
T Consensus 94 ~~~~~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl~~~~~~~~ 134 (140)
T 3sxm_A 94 ERYVVSNREHKELIERIISGDKEGAIEKLKEHLKNVEAETI 134 (140)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566777899999999999999999999998876555443
No 17
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=34.49 E-value=11 Score=27.96 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 168 AVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 168 A~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
.+++.+...+|+.+||.+.+..|+++++
T Consensus 5 ~~~~v~~~~~a~~~~d~~~~~~l~a~D~ 32 (132)
T 3ebt_A 5 NMQTVRESYEAFHRRDLPGVLAALAPDV 32 (132)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHhccCHHHHHHhcCCCE
Confidence 4667777888999999999999999885
No 18
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=34.35 E-value=12 Score=28.73 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
..+++.+...+|+.+||.+.|..|++|++
T Consensus 16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D~ 44 (149)
T 2bng_A 16 EAIRAVEAFLNALQNEDFDTVDAALGDDL 44 (149)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHcCCCE
Confidence 45667777788999999999999999874
No 19
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=33.12 E-value=13 Score=28.22 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 169 VDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 169 ~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
+++.+...+|+.+||.+.|..|++|++
T Consensus 25 ~~~v~~~~~a~~~~D~~~l~~l~a~D~ 51 (149)
T 1nww_A 25 EKIVLEFMDALTSNDAAKLIEYFAEDT 51 (149)
T ss_dssp HHHHHHHHHHGGGCCHHHHHTTBCSSC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHhCCCE
Confidence 445566677889999999999998874
No 20
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=32.67 E-value=15 Score=26.59 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 166 TEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 166 ~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
++..++.+...+|+.+||.+.|..|+++++
T Consensus 6 ~~i~~l~~~~~~A~~~~D~~~l~~l~~~d~ 35 (123)
T 2r4i_A 6 DVILDCEKKLLTAIQNNDVESLEVLLHDDL 35 (123)
T ss_dssp HHHTHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhhCcCe
Confidence 456677888899999999999999998763
No 21
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=32.58 E-value=6.7 Score=30.92 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 166 TEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 166 ~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
+.+++.++.-++|+..||.+.|..|++|++
T Consensus 9 ~~~~~~~~~~~~a~~~~D~~~l~~l~a~D~ 38 (143)
T 3mso_A 9 ANAAATLAEWHGLIARRDLSGLPRLLHPDA 38 (143)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTGGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCE
Confidence 456788899999999999999999998754
No 22
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=31.75 E-value=13 Score=29.28 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhhHHHH
Q 025014 168 AVDLYKEINTLMANGDKTSLRKAVTEKMY 196 (259)
Q Consensus 168 A~~aY~~I~~AfA~GDr~~Lr~LvTe~vy 196 (259)
.+++.+...+|+.+||.+.|..|++|++.
T Consensus 25 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~v 53 (163)
T 1z1s_A 25 AKEILVHSLRLLENGDARGWCDLFHPEGV 53 (163)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCEE
Confidence 45677778889999999999999999864
No 23
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=29.82 E-value=14 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
..+++.+....|+.+||.+.|..|++|++
T Consensus 11 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~ 39 (150)
T 1s5a_A 11 KACETLRKFMAYMLEKDMKSWTELWDENA 39 (150)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHhCCCCE
Confidence 45667778888999999999999998875
No 24
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=29.80 E-value=18 Score=26.47 Aligned_cols=29 Identities=10% Similarity=-0.069 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
..+++...-..|+..||.+.+..|.+|++
T Consensus 12 ~i~~~~~~~~~a~~~~D~~~~~~l~a~D~ 40 (135)
T 3d9r_A 12 VIEAAAIAYLTAFNRADIPAVIATYTDDG 40 (135)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCCE
Confidence 45666777788999999999999988763
No 25
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=29.46 E-value=8.3 Score=31.00 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 165 YTEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 165 l~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
.+.++++.+.-++|++.||.+.|..|++|+|
T Consensus 19 ~~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dv 49 (148)
T 3f8x_A 19 NAAVQSGLQEWHRIIAEADWERLPDLLAEDV 49 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTCGGGSGGGEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHhCCCE
Confidence 4567777888889999999999999998654
No 26
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=29.23 E-value=20 Score=21.19 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=15.0
Q ss_pred ccccccccCCCCCCcccc
Q 025014 47 ISSCLCKDHGALPWTRGS 64 (259)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~ 64 (259)
-|||.|-++||+.|-...
T Consensus 2 rhsciypgqynpsfisdd 19 (26)
T 3u7d_B 2 RHSCIFPGQYNPSFISDE 19 (26)
T ss_pred cccccccCccCcccccCc
Confidence 489999999999997643
No 27
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=29.08 E-value=14 Score=28.74 Aligned_cols=29 Identities=21% Similarity=0.420 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
..+++.+...+|+.+||.+.|.+|+++++
T Consensus 21 ~n~~~v~~~~~a~~~gD~~~l~~l~a~D~ 49 (148)
T 3g8z_A 21 NTIDIAKSYITAIQTGDHATLGSIISPDV 49 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHcCCCE
Confidence 34667777778899999999999998875
No 28
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=28.45 E-value=66 Score=26.94 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHHHHHHHh-cCCHHHHHHhh
Q 025014 161 KQKFYTEAVDLYKEINTLMA-NGDKTSLRKAV 191 (259)
Q Consensus 161 ~~~Fl~gA~~aY~~I~~AfA-~GDr~~Lr~Lv 191 (259)
...|++.|...+..|..|++ .+|.+.|+.+.
T Consensus 32 V~~F~edse~~l~~L~~AL~~~~D~~~L~~~a 63 (167)
T 2r25_A 32 IIQFIDQAQTTFAQMQRQLDGEKNLTELDNLG 63 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhcccCHHHHHHHH
Confidence 35899999999999999999 99999888654
No 29
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=28.31 E-value=14 Score=28.84 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHHHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEKMY 196 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~vy 196 (259)
+++++.+...+|+.+||.+.|..|+++++-
T Consensus 21 ~~~~lv~~~~~a~~~~D~~~l~~l~a~D~v 50 (151)
T 3f7x_A 21 TATELVNAYYAAFNAGDMPAFLALLSEDVI 50 (151)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhcCCCEE
Confidence 456777777889999999999999988763
No 30
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=27.24 E-value=2e+02 Score=21.74 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=49.8
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHhcCCHHHHHHhhhHHHHH-----HHHHHHHhhhccCC----eEEEEEe---cccccc
Q 025014 157 SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYS-----ALKNEIKQRESMWS----SVNWELI---EPIIKM 224 (259)
Q Consensus 157 ~~F~~~~Fl~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~vy~-----~f~~~Ik~Re~~~e----tv~w~fV---esIe~~ 224 (259)
..|+.+.-.+.|+ ++.+.|.+||-+.++.++++++-+ .|. ..+.-...++ ...|++. .+-...
T Consensus 9 ~~fde~~v~~~A~----~~I~~l~~~dy~~i~~~~~~~lk~~Lt~e~l~-~~~~~~~~~G~f~s~~~~~~~~~~~~~~~y 83 (114)
T 4hyz_A 9 EGFDKETVRKQAM----EDIEIAQSKDYESWKSRFTKDLQSSLTEESYD-SYLKILEKQGEFKEFGKCTYLGQIKDNKKY 83 (114)
T ss_dssp TTCCHHHHHHHHH----HHHHHHHTTCHHHHHTTBCHHHHTTCCHHHHH-HHHHHHHTTCSEEEEEEEEEEEEEETTEEE
T ss_pred hhhhHHHHHHHHH----HHHHHHHhCCHHHHHHHhCHHHHhhCCHHHHH-HHHHHHHhcCCceeeeceeeeeeccCCCce
Confidence 4566665555555 667788889988888887777732 223 2222222232 2344422 233444
Q ss_pred eEEEEEEeecccCCCCCeEEEEEEEEEeeEee
Q 025014 225 RTLRARLIGVDRNDLNKVFVQLTLEFLAKQVN 256 (259)
Q Consensus 225 rVV~ARl~~~~~kd~~n~~AQVTVRf~S~Q~~ 256 (259)
.||...|.- +|.-.++||=|..+..+
T Consensus 84 ~vv~~~~~y------e~~~~~f~i~Fd~d~kl 109 (114)
T 4hyz_A 84 GGVIIVVKY------EEGNVNYSLAYDEDMNL 109 (114)
T ss_dssp EEEEEEEEE------TTEEEEEEEEECTTSCE
T ss_pred EEEEEEEEE------eccceEEEEEECCCCcE
Confidence 566666644 56667777766555443
No 31
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=26.33 E-value=1.8e+02 Score=23.80 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCHHHHHHhhhHHHHHHH
Q 025014 161 KQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSAL 199 (259)
Q Consensus 161 ~~~Fl~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~vy~~f 199 (259)
.........+-+..|++|+.+||.+..+.++.+++-...
T Consensus 175 ~~~~~~~~~~eH~~I~~Ai~~~d~~~A~~~~~~Hl~~~~ 213 (222)
T 3ihu_A 175 LASLRQMRLDDYRRIATAVLAGEPDAAEAAGAAHVKNVR 213 (222)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 344556667788999999999999999999998875543
No 32
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=26.20 E-value=17 Score=26.69 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 169 VDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 169 ~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
+++.+...+|+++||.+.+..++++++
T Consensus 5 ~~~v~~~~~a~n~~D~~~~~~~~a~D~ 31 (117)
T 3ff2_A 5 LETAKAMIAAYNAQDVDTYVSYMTDDA 31 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHcccCHHHHHHhcCCcE
Confidence 456677788999999999999998876
No 33
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=26.01 E-value=41 Score=25.11 Aligned_cols=30 Identities=7% Similarity=0.140 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhhhHH
Q 025014 165 YTEAVDLYKEINTLMANGDKTSLRKAVTEK 194 (259)
Q Consensus 165 l~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~ 194 (259)
..++.++|.....|+..||.+.|..+.+++
T Consensus 13 ~~ei~~~~~~y~~A~~~~D~~~l~~lf~~d 42 (129)
T 2rcd_A 13 LADVTAAFYRYEKALTGNDVAVLDELFWHD 42 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHBCCS
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhccCC
Confidence 467888899999999999999999999877
No 34
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=25.39 E-value=21 Score=28.29 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
+-.++-+..++|+.+||.+.+..|+++++
T Consensus 13 eI~~~~~~~~~Ai~~gD~~~~~~l~~~dv 41 (143)
T 2f86_B 13 DIVRVTQTLLDAISCKDFETYTRLCDTSM 41 (143)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHccCHHHHHHhcCCCE
Confidence 34456678889999999999998887764
No 35
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=25.17 E-value=24 Score=26.76 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
+-.++++...+|+.+||.+.|..|+++++
T Consensus 15 ~I~~l~~~~~~A~~~~D~~~l~~L~~~d~ 43 (134)
T 3fsd_A 15 DIAFYEERLRAAMLTGDLKGLETLLADDL 43 (134)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhhcCCCE
Confidence 35667888889999999999999998764
No 36
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=24.81 E-value=21 Score=26.21 Aligned_cols=28 Identities=4% Similarity=-0.177 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 168 AVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 168 A~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
++++-....+|++.||.+.+..++++++
T Consensus 5 ~~~~v~~~~~a~n~~D~~~~~~~~a~D~ 32 (123)
T 2k54_A 5 IELPVQKQLEAYNARDIDAFMAWWADDC 32 (123)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHhcCHHHHHhhcCCce
Confidence 4556666778999999999999999885
No 37
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=24.16 E-value=31 Score=25.95 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhhhHH
Q 025014 166 TEAVDLYKEINTLMANGDKTSLRKAVTEK 194 (259)
Q Consensus 166 ~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~ 194 (259)
++.+++....+.|+.+||.+.+..+.+++
T Consensus 13 ~~I~~l~~~~~~A~~~~D~~~~~~l~a~d 41 (143)
T 2ux0_A 13 QEIIKITEQLIEAINNGDFEAYTKICDPG 41 (143)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence 45677788899999999999999998877
No 38
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=24.06 E-value=74 Score=26.05 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=39.8
Q ss_pred CCCCh--hhhHHHHHHHHHHHHHHHhcC---CHHHHHHhhhHHHHHHHHHHHHh
Q 025014 157 SGYSK--QKFYTEAVDLYKEINTLMANG---DKTSLRKAVTEKMYSALKNEIKQ 205 (259)
Q Consensus 157 ~~F~~--~~Fl~gA~~aY~~I~~AfA~G---Dr~~Lr~LvTe~vy~~f~~~Ik~ 205 (259)
.+-+| +.|..+....++.++...-+| |.+.|+.++ +.|.++..+.++
T Consensus 78 ~~L~Peak~Fv~kli~~~r~l~~~~~~G~k~~~~~lK~~~--~~ykaLS~~aK~ 129 (140)
T 2w9y_A 78 DGLSPAAVEYAKKLIHMVTTTLCSLTVGKPIDDADAKRLH--QEFQSLSSEDQA 129 (140)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCTHHHHHHH--HHHHTSCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHcCCHHHHH
Confidence 66675 699999999999999999888 678899987 888888777665
No 39
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=23.37 E-value=9.2 Score=28.26 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 172 YKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 172 Y~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
-+...+||++||.+.+..++++++
T Consensus 6 v~~~~~a~~~gD~~~~~~~ladDv 29 (112)
T 3f14_A 6 HYSIAQHFSSGDFPAVYACFNDII 29 (112)
T ss_dssp HHHHHHHHHTTCGGGTGGGEEEEE
T ss_pred HHHHHHHHHcCCHHHHHHhcCCce
Confidence 345668999999999999999874
No 40
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=22.91 E-value=24 Score=27.09 Aligned_cols=29 Identities=7% Similarity=-0.028 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
..+++.+...+|+..||.+.+.+++++++
T Consensus 5 ~~~~~v~~~~~a~~~~d~~~~~~~~a~D~ 33 (152)
T 2gex_A 5 ANKERCLEMVAAWNRWDVSGVVAHWAPDV 33 (152)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCe
Confidence 45667777778889999999999988753
No 41
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=22.52 E-value=24 Score=25.45 Aligned_cols=30 Identities=3% Similarity=0.009 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 166 TEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 166 ~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
+.-+++...-..|+.+||.+.|..|.++++
T Consensus 6 ~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da 35 (129)
T 3hx8_A 6 EAIEAANADFVKAYNSKDAAGVASKYMDDA 35 (129)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhCCCe
Confidence 455677777888999999999999998764
No 42
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=22.20 E-value=25 Score=26.47 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 166 TEAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 166 ~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
++.+++......|+++||.+.+..+.++++
T Consensus 8 ~~I~~l~~~~~~A~~~~D~~~~~~l~a~D~ 37 (142)
T 3f7s_A 8 SEIRQLIERWMQAVRDRDIPGIIAPYADDI 37 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCE
Confidence 345677888899999999999999988863
No 43
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=21.84 E-value=25 Score=28.75 Aligned_cols=29 Identities=3% Similarity=0.019 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhhHHHH
Q 025014 168 AVDLYKEINTLMANGDKTSLRKAVTEKMY 196 (259)
Q Consensus 168 A~~aY~~I~~AfA~GDr~~Lr~LvTe~vy 196 (259)
.+++.....+|++.||.+.|.+|++|+|-
T Consensus 12 ~~~~v~ry~~A~n~gD~d~l~~l~aeD~v 40 (156)
T 3g16_A 12 MEKVIRTYYDGCNEADEAKMIACFVPEAV 40 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEE
Confidence 34555666679999999999999987654
No 44
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=21.45 E-value=28 Score=25.92 Aligned_cols=29 Identities=7% Similarity=0.018 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEKM 195 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~v 195 (259)
.++++...-..|+..||.+.|..|.++++
T Consensus 8 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D~ 36 (139)
T 2a15_A 8 PALIASQSSWRCVQAHDREGWLALMADDV 36 (139)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhcCCCE
Confidence 35566777788999999999999998874
No 45
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=21.43 E-value=1.2e+02 Score=22.86 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHH
Q 025014 162 QKFYTEAVDLYKEINTLMANGDKTSLRK 189 (259)
Q Consensus 162 ~~Fl~gA~~aY~~I~~AfA~GDr~~Lr~ 189 (259)
..|++++.+....+..|+.++|.+.++.
T Consensus 34 ~~F~~e~~~~l~~L~~a~~~~d~~~~~~ 61 (125)
T 2a0b_A 34 AVFEKMMPGYVSVLESNLTAQDKKGIVE 61 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHcCCHHHHHH
Confidence 4789999999999999999999876553
No 46
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=21.30 E-value=2e+02 Score=23.47 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHhhhHHHHHHHHHHHH
Q 025014 162 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIK 204 (259)
Q Consensus 162 ~~Fl~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~vy~~f~~~Ik 204 (259)
........+-...|++|+.+||.+..+.++.+++......-++
T Consensus 168 ~~~~~~~~~~H~~i~~ai~~~d~~~A~~~~~~Hl~~~~~~~~~ 210 (218)
T 3sxy_A 168 NERYVVSNREHKELIERIISGDKEGAIEKLKEHLKNVEAETIK 210 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778999999999999999999999988766554443
No 47
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=20.83 E-value=2.6e+02 Score=23.30 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHhhhHHHHHHHHH
Q 025014 163 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKN 201 (259)
Q Consensus 163 ~Fl~gA~~aY~~I~~AfA~GDr~~Lr~LvTe~vy~~f~~ 201 (259)
.......+-...|++|+.+||.+..+.++.+++-.....
T Consensus 189 ~~~~~~~~eH~~I~~Ai~~~D~~~A~~~m~~Hl~~~~~~ 227 (239)
T 2hs5_A 189 RFHGPYLTRNHEIYDALAAGNTEAAGQLLKTYLEDAEAQ 227 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 445566677899999999999999999999987655443
No 48
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=20.06 E-value=26 Score=27.18 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhhHH
Q 025014 167 EAVDLYKEINTLMANGDKTSLRKAVTEK 194 (259)
Q Consensus 167 gA~~aY~~I~~AfA~GDr~~Lr~LvTe~ 194 (259)
..+++.+...+|+..||.+.+.++++++
T Consensus 5 ~~~~~v~~~~~a~~~~D~~~~~~~~a~D 32 (158)
T 2gey_A 5 ERKALCLEMVAAWNRWDLSGIIKHWSPD 32 (158)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcCCC
Confidence 4566777778899999999999999875
Done!