Query 025016
Match_columns 259
No_of_seqs 263 out of 1040
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:32:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_H 60S ribosomal protein L 100.0 7E-114 2E-118 775.7 7.2 258 1-259 1-258 (258)
2 4a17_F RPL7A, 60S ribosomal pr 100.0 1E-109 4E-114 749.5 23.0 252 1-259 3-254 (255)
3 3izc_H 60S ribosomal protein R 100.0 2E-107 5E-112 737.2 7.1 250 1-252 1-255 (256)
4 2zkr_f 60S ribosomal protein L 100.0 3E-103 1E-107 712.9 7.8 254 6-259 9-266 (266)
5 3jyw_G 60S ribosomal protein L 100.0 2.3E-34 7.9E-39 232.6 -1.2 109 107-215 2-112 (113)
6 2lbw_A H/ACA ribonucleoprotein 100.0 3.6E-29 1.2E-33 203.1 9.2 113 101-229 4-117 (121)
7 2ale_A SNU13, NHP2/L7AE family 99.9 8.7E-28 3E-32 198.8 11.0 120 97-230 12-132 (134)
8 1xbi_A 50S ribosomal protein L 99.9 1.6E-25 5.4E-30 181.4 9.9 107 95-217 10-117 (120)
9 1rlg_A 50S ribosomal protein L 99.9 2.8E-25 9.6E-30 179.2 10.6 109 97-217 7-116 (119)
10 1vq8_F 50S ribosomal protein L 99.9 7.9E-25 2.7E-29 176.8 12.5 109 97-217 9-118 (120)
11 2xzm_U Ribosomal protein L7AE 99.9 3E-25 1E-29 181.9 7.1 105 101-216 8-125 (126)
12 2fc3_A 50S ribosomal protein L 99.9 2.1E-24 7.2E-29 175.4 12.0 108 97-216 8-116 (124)
13 3o85_A Ribosomal protein L7AE; 99.9 1.6E-23 5.6E-28 170.4 12.7 105 99-215 13-118 (122)
14 2jnb_A NHP2-like protein 1; sp 99.9 2.3E-23 8E-28 174.4 10.7 107 98-215 31-139 (144)
15 2aif_A Ribosomal protein L7A; 99.9 3.5E-22 1.2E-26 164.9 12.3 97 97-204 21-118 (135)
16 3v7q_A Probable ribosomal prot 99.9 1.4E-22 4.8E-27 159.3 8.8 89 102-202 4-92 (101)
17 3on1_A BH2414 protein; structu 99.9 2.2E-22 7.6E-27 157.9 9.9 89 102-202 3-91 (101)
18 3cpq_A 50S ribosomal protein L 99.8 5.1E-21 1.8E-25 152.5 10.3 90 103-204 7-98 (110)
19 1w41_A 50S ribosomal protein L 99.8 6.4E-21 2.2E-25 149.4 9.9 89 104-204 3-93 (101)
20 3j21_Z 50S ribosomal protein L 99.8 2.4E-20 8.4E-25 145.7 11.6 89 105-205 3-93 (99)
21 4a18_G RPL30; ribosome, eukary 99.8 6E-21 2E-25 150.7 7.7 91 102-204 7-99 (104)
22 3v7e_A Ribosome-associated pro 99.8 9.3E-21 3.2E-25 144.1 8.1 69 129-198 12-81 (82)
23 3iz5_f 60S ribosomal protein L 99.8 1.5E-20 5E-25 151.2 8.9 93 101-205 10-104 (112)
24 3u5e_c L32, RP73, YL38, 60S ri 99.8 1.8E-20 6.3E-25 148.3 7.3 93 101-205 6-100 (105)
25 3u5c_M 40S ribosomal protein S 99.8 4.2E-19 1.4E-23 148.7 7.3 102 103-216 26-141 (143)
26 3vi6_A 60S ribosomal protein L 99.7 1.7E-18 5.9E-23 141.4 4.3 92 102-205 12-105 (125)
27 2kg4_A Growth arrest and DNA-d 99.7 1.8E-16 6.2E-21 135.4 10.2 107 100-217 18-149 (165)
28 3cg6_A Growth arrest and DNA-d 99.1 8.9E-10 3E-14 92.4 11.7 103 105-218 13-132 (146)
29 3ffm_A Growth arrest and DNA-d 98.9 1.2E-08 4E-13 87.1 11.2 101 106-217 35-152 (167)
30 3ir9_A Peptide chain release f 92.7 0.48 1.6E-05 39.7 8.4 59 129-187 47-149 (166)
31 1x52_A Pelota homolog, CGI-17; 85.2 1.2 4E-05 35.6 5.0 71 128-200 38-115 (124)
32 3agk_A Peptide chain release f 85.0 6 0.0002 36.5 10.4 55 128-185 299-353 (373)
33 3e20_C Eukaryotic peptide chai 84.4 4.1 0.00014 38.9 9.3 73 128-200 305-422 (441)
34 1b93_A Protein (methylglyoxal 83.7 1.9 6.4E-05 35.9 5.7 47 132-178 70-120 (152)
35 3j15_A Protein pelota; ribosom 83.1 2.2 7.7E-05 39.5 6.6 69 129-198 281-352 (357)
36 1dt9_A ERF1, protein (eukaryot 82.2 9.8 0.00034 35.9 10.8 98 83-186 261-401 (437)
37 2qi2_A Pelota, cell division p 82.0 4.7 0.00016 37.3 8.4 110 81-201 224-337 (347)
38 3obw_A Protein pelota homolog; 81.9 4.9 0.00017 37.5 8.5 71 127-198 284-359 (364)
39 3nk6_A 23S rRNA methyltransfer 81.8 5.2 0.00018 35.7 8.4 71 127-201 34-106 (277)
40 3oby_A Protein pelota homolog; 81.2 2.6 8.8E-05 39.3 6.3 73 129-202 266-342 (352)
41 2xw6_A MGS, methylglyoxal synt 80.7 1.8 6.3E-05 35.2 4.5 46 131-176 61-110 (134)
42 1vmd_A MGS, methylglyoxal synt 80.4 2.3 7.8E-05 36.4 5.2 47 132-178 86-136 (178)
43 1gz0_A Hypothetical tRNA/RRNA 76.2 6.8 0.00023 34.4 7.2 71 128-200 13-86 (253)
44 2ohw_A YUEI protein; structura 75.3 12 0.00041 30.3 7.9 87 87-179 9-97 (133)
45 3agj_B Protein pelota homolog; 72.9 8.6 0.00029 35.5 7.3 73 128-201 272-350 (358)
46 1ipa_A RRMH, RNA 2'-O-ribose m 71.7 9.1 0.00031 34.0 7.0 69 128-198 29-100 (274)
47 3nkl_A UDP-D-quinovosamine 4-d 69.9 5.5 0.00019 30.4 4.5 54 130-183 51-104 (141)
48 2vgn_A DOM34; translation term 67.7 24 0.00084 32.8 9.2 73 127-200 296-374 (386)
49 2yvq_A Carbamoyl-phosphate syn 67.1 5.6 0.00019 31.9 4.1 43 134-176 86-130 (143)
50 3mca_B Protein DOM34, elongati 60.1 25 0.00087 32.9 7.8 69 129-199 292-367 (390)
51 1xty_A PTH, peptidyl-tRNA hydr 57.2 53 0.0018 25.6 8.1 66 138-211 48-113 (120)
52 1pjq_A CYSG, siroheme synthase 56.4 18 0.00063 34.0 6.3 78 144-225 72-153 (457)
53 3dfz_A SIRC, precorrin-2 dehyd 55.9 18 0.00061 31.3 5.6 77 144-226 91-172 (223)
54 2zv3_A PTH, peptidyl-tRNA hydr 55.0 42 0.0015 26.0 7.2 69 135-211 40-108 (115)
55 1wn2_A Peptidyl-tRNA hydrolase 54.2 65 0.0022 25.2 8.2 68 136-211 47-114 (121)
56 3cg4_A Response regulator rece 52.0 64 0.0022 23.3 9.1 87 129-216 36-125 (142)
57 3cnb_A DNA-binding response re 51.4 49 0.0017 23.8 6.8 55 129-183 39-96 (143)
58 3kht_A Response regulator; PSI 51.3 34 0.0012 25.1 5.9 55 129-183 36-93 (144)
59 1kyq_A Met8P, siroheme biosynt 49.8 41 0.0014 30.0 7.1 72 144-219 106-185 (274)
60 1rlk_A Hypothetical protein TA 49.6 80 0.0028 24.5 8.0 67 135-211 42-110 (117)
61 3cg0_A Response regulator rece 49.4 70 0.0024 22.9 7.3 53 130-182 40-93 (140)
62 1q7s_A BIT1, protein CGI-147; 45.8 87 0.003 24.3 7.6 68 135-211 42-110 (117)
63 2qzj_A Two-component response 45.5 64 0.0022 23.6 6.6 52 131-182 35-86 (136)
64 3ib7_A ICC protein; metallopho 45.0 31 0.0011 29.4 5.4 51 133-183 53-112 (330)
65 3n53_A Response regulator rece 42.5 94 0.0032 22.4 7.9 56 129-184 31-89 (140)
66 1uf3_A Hypothetical protein TT 42.4 41 0.0014 26.7 5.5 46 136-182 24-74 (228)
67 3cwc_A Putative glycerate kina 41.4 42 0.0014 31.7 6.0 100 127-230 266-376 (383)
68 2yc2_C IFT27, small RAB-relate 40.4 50 0.0017 25.7 5.5 42 144-185 96-146 (208)
69 2zay_A Response regulator rece 38.6 92 0.0031 22.6 6.6 54 129-182 37-93 (147)
70 1x7o_A Avirb, rRNA methyltrans 38.1 74 0.0025 28.3 6.9 68 128-199 41-111 (287)
71 3gkn_A Bacterioferritin comigr 37.9 1.1E+02 0.0036 23.1 7.0 45 140-189 65-110 (163)
72 3szu_A ISPH, 4-hydroxy-3-methy 37.7 98 0.0033 28.6 7.8 73 145-220 226-299 (328)
73 3drn_A Peroxiredoxin, bacterio 37.1 1.4E+02 0.0046 22.7 8.3 43 143-190 62-105 (161)
74 1k66_A Phytochrome response re 36.3 1.2E+02 0.004 21.8 6.9 54 129-182 37-103 (149)
75 3ira_A Conserved protein; meth 36.2 39 0.0013 27.8 4.4 76 146-227 74-154 (173)
76 3hv2_A Response regulator/HD d 35.6 1.3E+02 0.0045 22.1 7.4 55 129-183 43-98 (153)
77 4fbw_A DNA repair protein RAD3 35.6 51 0.0017 31.1 5.7 22 133-154 41-62 (417)
78 2f9s_A Thiol-disulfide oxidore 34.3 91 0.0031 23.1 6.0 52 144-199 59-111 (151)
79 2l5o_A Putative thioredoxin; s 34.0 1.4E+02 0.0047 22.0 6.9 52 145-199 62-114 (153)
80 3vot_A L-amino acid ligase, BL 32.9 2.4E+02 0.0083 25.2 9.6 108 142-259 3-124 (425)
81 2qr3_A Two-component system re 32.3 1.3E+02 0.0046 21.3 6.5 54 129-182 32-91 (140)
82 3dnf_A ISPH, LYTB, 4-hydroxy-3 32.3 1.7E+02 0.0058 26.6 8.3 70 144-216 209-279 (297)
83 3st8_A Bifunctional protein GL 31.5 2.1E+02 0.007 26.6 9.1 101 116-217 19-138 (501)
84 1to6_A Glycerate kinase; glyce 31.2 2E+02 0.0067 27.0 8.8 99 127-230 257-366 (371)
85 3eod_A Protein HNR; response r 30.3 93 0.0032 22.0 5.3 55 130-184 37-92 (130)
86 2dyk_A GTP-binding protein; GT 30.1 41 0.0014 24.9 3.3 42 144-185 79-122 (161)
87 3or5_A Thiol:disulfide interch 29.7 1.7E+02 0.0058 21.6 7.3 39 145-187 68-106 (165)
88 3hdg_A Uncharacterized protein 29.4 1.5E+02 0.0053 21.0 6.7 54 129-182 36-90 (137)
89 3grc_A Sensor protein, kinase; 29.3 1.6E+02 0.0054 21.1 9.3 58 129-186 35-95 (140)
90 3av0_A DNA double-strand break 29.2 67 0.0023 29.0 5.2 49 133-182 49-106 (386)
91 2ioj_A Hypothetical protein AF 28.5 81 0.0028 24.3 4.9 48 128-178 55-105 (139)
92 3del_B Arginine binding protei 28.5 2.1E+02 0.0072 22.3 7.8 93 129-239 143-239 (242)
93 1ivn_A Thioesterase I; hydrola 28.4 1.1E+02 0.0036 23.8 5.6 45 134-178 89-140 (190)
94 1s3l_A Hypothetical protein MJ 28.4 75 0.0026 25.9 4.9 44 134-182 42-86 (190)
95 3flu_A DHDPS, dihydrodipicolin 28.4 3E+02 0.01 24.1 10.1 108 102-218 60-186 (297)
96 4fbk_A DNA repair and telomere 28.4 76 0.0026 30.6 5.6 22 133-154 104-125 (472)
97 1k68_A Phytochrome response re 28.3 1.6E+02 0.0053 20.7 6.7 54 129-182 33-96 (140)
98 2pln_A HP1043, response regula 28.0 1.3E+02 0.0043 21.6 5.7 49 130-182 48-97 (137)
99 2yvt_A Hypothetical protein AQ 27.9 92 0.0032 25.5 5.4 24 133-156 21-44 (260)
100 1xky_A Dihydrodipicolinate syn 27.6 3.2E+02 0.011 24.0 9.5 106 106-219 68-192 (301)
101 3qze_A DHDPS, dihydrodipicolin 27.6 3.3E+02 0.011 24.2 10.2 141 70-219 28-203 (314)
102 1ii7_A MRE11 nuclease; RAD50, 26.9 1.2E+02 0.0042 26.5 6.4 48 133-180 29-84 (333)
103 3i8s_A Ferrous iron transport 26.8 49 0.0017 28.4 3.6 41 143-183 84-124 (274)
104 3qel_B Glutamate [NMDA] recept 26.7 2.3E+02 0.008 25.0 8.3 47 133-179 52-98 (364)
105 3tak_A DHDPS, dihydrodipicolin 26.0 3.3E+02 0.011 23.7 11.0 110 101-219 53-181 (291)
106 3d03_A Phosphohydrolase; glyce 25.9 1.4E+02 0.0046 24.4 6.1 51 133-183 28-83 (274)
107 3tho_B Exonuclease, putative; 25.9 72 0.0024 28.9 4.7 48 133-182 32-89 (379)
108 3kcm_A Thioredoxin family prot 25.8 1.6E+02 0.0055 21.6 6.1 44 145-191 62-106 (154)
109 2wji_A Ferrous iron transport 25.3 66 0.0022 24.5 3.8 40 144-184 81-121 (165)
110 3h5d_A DHDPS, dihydrodipicolin 25.1 3.5E+02 0.012 24.0 9.1 104 106-218 63-186 (311)
111 2q8u_A Exonuclease, putative; 25.1 96 0.0033 27.1 5.3 46 133-180 50-105 (336)
112 1cp2_A CP2, nitrogenase iron p 25.0 1E+02 0.0034 25.6 5.2 42 149-190 179-221 (269)
113 3ecd_A Serine hydroxymethyltra 24.9 74 0.0025 27.7 4.5 43 133-176 161-205 (425)
114 3iby_A Ferrous iron transport 24.9 55 0.0019 27.9 3.6 41 143-183 82-122 (256)
115 3fw2_A Thiol-disulfide oxidore 24.8 2E+02 0.0068 21.2 6.5 52 145-200 70-125 (150)
116 2o1e_A YCDH; alpha-beta protei 24.2 3.7E+02 0.013 23.7 9.9 25 154-179 223-247 (312)
117 3ly0_A Dipeptidase AC. metallo 24.1 63 0.0022 30.1 4.0 69 153-235 279-348 (364)
118 2j01_J 50S ribosomal protein L 24.0 2.5E+02 0.0086 22.8 7.4 108 133-246 10-128 (173)
119 3kzg_A Arginine 3RD transport 23.9 1.3E+02 0.0043 23.7 5.4 90 129-234 136-232 (237)
120 3t1o_A Gliding protein MGLA; G 23.8 59 0.002 24.8 3.3 41 144-184 97-148 (198)
121 3a5f_A Dihydrodipicolinate syn 23.7 3.6E+02 0.012 23.4 9.7 106 106-219 57-181 (291)
122 3g0t_A Putative aminotransfera 23.6 94 0.0032 27.4 5.0 44 133-176 171-220 (437)
123 3hp4_A GDSL-esterase; psychrot 23.6 1.3E+02 0.0044 22.9 5.2 43 136-178 95-144 (185)
124 3h5i_A Response regulator/sens 23.2 2.1E+02 0.0073 20.6 10.6 53 130-182 35-89 (140)
125 2j48_A Two-component sensor ki 22.9 1.8E+02 0.0061 19.5 5.7 53 130-182 31-86 (119)
126 3fkr_A L-2-keto-3-deoxyarabona 22.9 3.9E+02 0.013 23.5 9.9 107 106-219 64-192 (309)
127 3qax_A Probable ABC transporte 22.8 2.8E+02 0.0096 21.8 8.2 92 129-235 164-256 (268)
128 1qkk_A DCTD, C4-dicarboxylate 22.6 2E+02 0.007 21.0 6.1 53 130-182 33-86 (155)
129 1d2f_A MALY protein; aminotran 22.6 99 0.0034 26.8 4.8 44 133-176 151-200 (390)
130 3i6v_A Periplasmic His/Glu/Gln 22.6 2.8E+02 0.0097 21.8 7.9 92 129-237 130-222 (232)
131 3f6p_A Transcriptional regulat 22.5 2E+02 0.007 20.1 6.2 51 131-181 33-83 (120)
132 2nxf_A Putative dimetal phosph 22.4 1.3E+02 0.0046 24.8 5.5 50 134-183 41-99 (322)
133 3a1s_A Iron(II) transport prot 22.4 86 0.0029 26.7 4.3 41 143-183 82-122 (258)
134 3gbx_A Serine hydroxymethyltra 22.4 87 0.003 27.2 4.4 43 133-176 158-202 (420)
135 1rxw_A Flap structure-specific 22.2 67 0.0023 28.9 3.7 35 152-187 124-160 (336)
136 3lhk_A Putative DNA binding pr 21.9 1.8E+02 0.0061 23.0 5.9 47 132-179 54-102 (154)
137 3t1i_A Double-strand break rep 21.9 1.2E+02 0.0042 28.6 5.6 23 133-155 60-82 (431)
138 1svv_A Threonine aldolase; str 21.9 1.3E+02 0.0043 25.3 5.3 43 133-176 128-182 (359)
139 2a22_A Vacuolar protein sortin 21.8 99 0.0034 25.4 4.5 42 137-182 48-89 (215)
140 1c7n_A Cystalysin; transferase 21.7 1E+02 0.0035 26.8 4.7 44 133-176 153-202 (399)
141 2gkg_A Response regulator homo 21.5 2E+02 0.007 19.7 7.3 53 129-182 34-90 (127)
142 2y7i_A STM4351; arginine-bindi 21.0 2.8E+02 0.0097 21.2 7.0 89 130-232 139-228 (229)
143 4h5g_A Amino acid ABC superfam 20.9 2.3E+02 0.0079 22.6 6.5 23 129-151 149-171 (243)
144 3mfq_A TROA, high-affinity zin 20.7 1E+02 0.0034 27.1 4.5 24 155-179 197-220 (282)
145 2x5n_A SPRPN10, 26S proteasome 20.7 1.4E+02 0.0049 24.5 5.2 47 129-176 86-140 (192)
146 3dip_A Enolase; structural gen 20.7 4.2E+02 0.014 24.3 8.9 103 76-187 219-331 (410)
147 3gt7_A Sensor protein; structu 20.6 2.6E+02 0.0088 20.6 6.7 54 129-182 36-92 (154)
148 1upt_A ARL1, ADP-ribosylation 20.6 69 0.0024 23.9 3.0 41 144-184 74-121 (171)
149 1zd9_A ADP-ribosylation factor 20.6 59 0.002 25.3 2.7 41 144-184 90-137 (188)
150 3qq5_A Small GTP-binding prote 20.5 1.1E+02 0.0039 28.5 5.0 40 145-184 114-153 (423)
151 1zgz_A Torcad operon transcrip 20.4 2.2E+02 0.0075 19.6 7.1 52 131-182 33-84 (122)
152 1jkx_A GART;, phosphoribosylgl 20.2 1.5E+02 0.0052 25.0 5.4 47 128-178 5-57 (212)
153 1su1_A Hypothetical protein YF 20.2 89 0.0031 25.7 3.8 17 138-154 46-62 (208)
154 2h57_A ADP-ribosylation factor 20.1 69 0.0024 24.8 3.0 40 145-184 91-139 (190)
155 3pqc_A Probable GTP-binding pr 20.1 86 0.0029 23.9 3.5 40 144-183 104-145 (195)
156 1rzw_A Protein AF2095(GR4); be 20.1 1.7E+02 0.0057 23.1 5.2 55 138-197 42-96 (123)
157 2lkc_A Translation initiation 20.1 81 0.0028 23.7 3.3 39 145-184 79-120 (178)
158 1tp9_A Peroxiredoxin, PRX D (t 20.0 2.9E+02 0.01 21.0 7.2 47 139-190 65-115 (162)
No 1
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=100.00 E-value=7e-114 Score=775.73 Aligned_cols=258 Identities=90% Similarity=1.352 Sum_probs=199.2
Q ss_pred CCCCCCCCCCCCcccCCCccccCCccccCCCccccCCCCCCCCccccccccchhhHhHHhHHHHhhhccCCccccccccc
Q 025016 1 MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKT 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~k~~~~pl~ekrpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf~~~ 80 (259)
|+|+.++..++.. +.++++++|||||+|||||||||||||||||||||+||+||||||||+|||+||||||+||||+++
T Consensus 1 ~~pk~~~~~~~~~-~~~~~k~~nplfekrpknfgigqdiqpkrdltrfvkwP~yirlqrqr~il~~rlKvppainqF~~~ 79 (258)
T 3iz5_H 1 MAPKRGGRAPVPA-KKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRT 79 (258)
T ss_dssp ----------------------------------------------------------CCSCCCCHHHHSCCSCSHHHHH
T ss_pred CCCCCCCCCCCcc-ccccccccCcccccCCCccccCccCCCCcccceeeeccceeeHHHHHHHHHhcccCCCcccccCCc
Confidence 8888544444432 223368999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhH
Q 025016 81 LDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELV 160 (259)
Q Consensus 81 ld~~~a~~l~kl~~kyrPe~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv 160 (259)
||+|+|||||+|+|||||||++||++||++.|+++|+|+++|+++|++|..|+|+||++||+++|+|||||+||||+|++
T Consensus 80 ld~~tatql~kl~~KYrPEtk~ekk~rL~~~a~~ka~gk~~~~krp~~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV 159 (258)
T 3iz5_H 80 LDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELV 159 (258)
T ss_dssp HHHHHCCCCCCCCCCCCCTHHHHHHHHHHHHHHTTCCCCSSSSCCCCCEEESHHHHHHHHHTTCEEEEEEESCCSSTHHH
T ss_pred CchhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCCCCCCCCceeecccHHHHHHHHcCcceEEEEeCCCChHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHHhhhhhhHhhhhhcCCCCCCchhH
Q 025016 161 VWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 240 (259)
Q Consensus 161 ~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~y~d~y~e~~~~wgg~~lg~ks~ 240 (259)
.|||+||++||||||+|+|+++||+++|+++|+||||+|+|+||+++|++|||+|++|||||||||||||||||||+||+
T Consensus 160 ~fLPaLC~k~gVPY~iVk~KarLG~~vgrKtct~Va~t~v~~eDk~aLakLveairtnynd~y~ei~~~wGG~vlg~ks~ 239 (258)
T 3iz5_H 160 VWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQ 239 (258)
T ss_dssp HHHHHHHTTTTCCEEEESCHHHHHHHTTCSSCCSEEEEESCCSCCHHHHHHHHHHTTTSCCCCCCCCSSCCCCCCHHHHH
T ss_pred hHHHHHHHhcCCCeEEECCHHHHHHHhCCccceEEEEEecCHHHHHHHHHHHHHHHhHhhhhhHHHhhccCCCccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 025016 241 AKTKAKEKLLAKEAAQRLT 259 (259)
Q Consensus 241 ~~~~k~~k~~~~e~~~k~~ 259 (259)
++|+|+|||+++|+|+|+.
T Consensus 240 a~~ak~eka~ake~a~k~~ 258 (258)
T 3iz5_H 240 AKTKAREKLLAKEAAQRMT 258 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhHHHHhhcC
Confidence 9999999999999999974
No 2
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=100.00 E-value=1.3e-109 Score=749.46 Aligned_cols=252 Identities=56% Similarity=0.943 Sum_probs=230.1
Q ss_pred CCCCCCCCCCCCcccCCCccccCCccccCCCccccCCCCCCCCccccccccchhhHhHHhHHHHhhhccCCccccccccc
Q 025016 1 MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKT 80 (259)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~k~~~~pl~ekrpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf~~~ 80 (259)
|+|++|++. ++ ..+++|||||+|||||||||||||||||||||+||+||||||||+|||+||||||+||||+++
T Consensus 3 ~~p~~~~~~----~~--~~k~~nplfekrpknfgig~diqpkrdlt~fvkwp~yirlqrq~~il~~rlkvpp~inqf~~~ 76 (255)
T 4a17_F 3 KAPKKITKP----KK--AEKKKNPLFQAKPRSFRVGGDIQPKRDLTRFVRWPRYITLQRQKRVLLQRLKVPPQIHQFTKT 76 (255)
T ss_dssp ----------------------CCTTCCCCCCCSSSSSCCCCCCCGGGCBCCHHHHHHHHHHHHHHHSBCCHHHHGGGCC
T ss_pred CCCccCccc----cc--cccccCcccccCCCcCCcCCCCCCccccccceeccceeeHHHHHHHHHhcccCCCcccccCCC
Confidence 566654422 12 348899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhH
Q 025016 81 LDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELV 160 (259)
Q Consensus 81 ld~~~a~~l~kl~~kyrPe~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv 160 (259)
||+|+|||||+|+|||||||++||++||++.|+++|+|+++++++|.+|.+|+++|+++|++|+|+|||||+||||++++
T Consensus 77 ld~~~a~ql~kl~~kyrpetk~ekk~rl~~~a~~ka~gk~~~~k~p~~lk~GvneVtKaIekgKAqLVVIA~DvdPielv 156 (255)
T 4a17_F 77 LDKNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIENKQAKLVVIAHDVDPIELV 156 (255)
T ss_dssp CCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTTCCCCCCCCCCEEECHHHHHHHHHTSCCSEEEEESCCSSTHHH
T ss_pred CChhhHHHHHHHHHhcCccchHHHHHHHHHHHHHHhcCCCCCCCCCceeecchHHHHHHHHcCCceEEEEeCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHHhhhhhhHhhhhhcCCCCCCchhH
Q 025016 161 VWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQ 240 (259)
Q Consensus 161 ~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~y~d~y~e~~~~wgg~~lg~ks~ 240 (259)
.|||+||++||||||+|+|+++||++||+++|+||||+|+|+||+++|++|+|+|++||||| |||||||||||||+||+
T Consensus 157 ~~LPaLCee~~VPY~~V~sK~~LG~avGrKt~s~Vaitdv~~EDk~al~kLve~iktnynd~-~e~~~~wgG~~lg~ks~ 235 (255)
T 4a17_F 157 IFLPQLCRKNDVPFAFVKGKAALGKLVNKKTATAVALTEVRNEDKAKLQQFSELFKTNYNAN-DELRKTWGGGILGQKSQ 235 (255)
T ss_dssp HHHHHHHHHTTCCEEEESCHHHHHHHHTSSCCSEEEECCCCHHHHHHHHHHHHHHHHHTTTC-CHHHHCCCBCCCCHHHH
T ss_pred HHHHHHHHHcCCCEEEECCHHHHHHHhCCCcceEEEeeccCHHHHHHHHHHHHHHHhhcccc-chhhhccCCCccChhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 025016 241 AKTKAKEKLLAKEAAQRLT 259 (259)
Q Consensus 241 ~~~~k~~k~~~~e~~~k~~ 259 (259)
++|+|+|||+++|+|+|+|
T Consensus 236 a~~~k~eka~ake~a~k~~ 254 (255)
T 4a17_F 236 HKVEALAKAVQEEQIKKAK 254 (255)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhHHHHHhcC
Confidence 9999999999999999986
No 3
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=100.00 E-value=1.5e-107 Score=737.24 Aligned_cols=250 Identities=57% Similarity=0.933 Sum_probs=191.2
Q ss_pred CCCCCCCCCC---CCcccCCCccccCCccccCCCccccCCCCCCCCccccccccchhhHhHHhHHHHhhhccCCcccccc
Q 025016 1 MAPKRGGKVA---AAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQF 77 (259)
Q Consensus 1 ~~~~~~~~~~---~~~~~~~~k~~~~pl~ekrpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf 77 (259)
|+| |++++ ++.+++++++++|||||+|||||||||||||||||||||+||+||||||||+|||+||||||+||||
T Consensus 1 ~~~--~kk~~~~p~~~kk~~~kk~~nplfekrpknfgig~diqpkrdl~~fvkwp~yi~lqrq~~il~~rlkvpp~inqf 78 (256)
T 3izc_H 1 MAP--GKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQKKILSIRLKVPPTIAQF 78 (256)
T ss_dssp -------------------------------------------------------------CCSSCCCTTTTCCCSCSHH
T ss_pred CCC--CCCCCCCCcchhhhccccccCcccccCCcccccCCCCCCcccchhheeccceeeHHHHHHHHHhcccCCCchhhc
Confidence 664 56654 3778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCCC--CccCCCceeecchHHHHHHHHhCCccEEEEeCCCC
Q 025016 78 TKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT--VEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVD 155 (259)
Q Consensus 78 ~~~ld~~~a~~l~kl~~kyrPe~k~eK~~rLl~lA~kkaaGk~--~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~Dvs 155 (259)
|++||+|+|||||+|+|||||||++||++||++.|+++|+|++ +|+++|.+|..|+++|+++|++|+|+|||||+|||
T Consensus 79 ~~~ld~~~a~~l~kl~~kyrpetk~ekk~rl~~~a~~~a~gk~~~~~~k~p~~lk~G~keV~KaIekgKAkLVVIA~Dad 158 (256)
T 3izc_H 79 QYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVD 158 (256)
T ss_dssp HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHTCCCCSSCSSCCCSCCEEESHHHHHHHHHHTCCSEEEEESCCS
T ss_pred CCcCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhccHHHHHHHHHhCcceEEEEeCCCC
Confidence 9999999999999999999999999999999999999999997 78999999999999999999999999999999999
Q ss_pred chhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHHhhhhhhHhhhhhcCCCCC
Q 025016 156 PIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIM 235 (259)
Q Consensus 156 P~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~y~d~y~e~~~~wgg~~l 235 (259)
|++++.|||+||+++|||||+++|+.+||++||+++|+||||+|+|+||+++|++|+|+|++||||||||||||||||||
T Consensus 159 P~eivk~LpaLC~k~gVPy~~V~sK~eLG~A~Gkk~~s~VAItD~g~eDk~al~kLve~iktnynd~y~e~~~~wgg~~l 238 (256)
T 3izc_H 159 PIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGIL 238 (256)
T ss_dssp SGGGTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEESSCCSCCHHHHHHHHHHHHHCCCCCCCCCSSCCCCCC
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCcEEEEeecCChhhHHHHHHHHHHHHhhhhhhhhhHhhhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHH
Q 025016 236 GSKSQAKTKAKEKLLAK 252 (259)
Q Consensus 236 g~ks~~~~~k~~k~~~~ 252 (259)
|+||+++|+|+|||++.
T Consensus 239 g~ks~~~~~k~~ka~~~ 255 (256)
T 3izc_H 239 GNKAQAKMDKRAKNSDS 255 (256)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHhhc
Confidence 99999999999999863
No 4
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.4e-103 Score=712.86 Aligned_cols=254 Identities=59% Similarity=0.987 Sum_probs=117.4
Q ss_pred CCCCC-C--CcccCCCccccCCccccCCCccccCCCCCCCCccccccccchhhHhHHhHHHHhhhccCCcccccccccCC
Q 025016 6 GGKVA-A--APAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTLD 82 (259)
Q Consensus 6 ~~~~~-~--~~~~~~~k~~~~pl~ekrpknf~ig~~i~pkrdl~~fvkwp~yi~lqrq~~il~~~lkvpp~inqf~~~ld 82 (259)
|++.+ + +.+++++++++|||||+|||||||||||||||||||||+||+|||||||++||++||||||+||||+++||
T Consensus 9 ~kk~~~~~~~~k~~~~~~~~npl~ekrpknf~ig~~i~pkrdl~rfvkwp~yirlqrq~~il~~rlkvpp~inqf~~~ld 88 (266)
T 2zkr_f 9 GKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 88 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcCCCCccccccccccccCCcccccCccccccCCCcccccchHhHhccchHHHHHHHHHHHHhhccCCCchhhcccccc
Confidence 55543 3 46788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCCC-CccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHh
Q 025016 83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT-VEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVV 161 (259)
Q Consensus 83 ~~~a~~l~kl~~kyrPe~k~eK~~rLl~lA~kkaaGk~-~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~ 161 (259)
+|+|+|||+|+|||||||++||++||+..|+++|+|++ +++++|..|++|+++|+++|++|+|+|||||+|+||++++.
T Consensus 89 ~~~a~~l~~l~~kyrpe~k~ekk~rl~~~a~~~a~~~~~~~~k~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~ 168 (266)
T 2zkr_f 89 RQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVV 168 (266)
T ss_dssp ---------------CHHHHHHHHHHHHTTSSTTTCCSCCSSSSCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTT
T ss_pred chhHHHHHHHHhhcCcccHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHH
Confidence 99999999999999999999999999999999999998 78899999999999999999999999999999999999999
Q ss_pred hHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHHhhhhhhHhhhhhcCCCCCCchhHH
Q 025016 162 WLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKWGGGIMGSKSQA 241 (259)
Q Consensus 162 ~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~y~d~y~e~~~~wgg~~lg~ks~~ 241 (259)
|||+||+++|||||+++|+.+||++||+++|+||||+|.|++|+++|++|+|+|++||||+|||||+|||||+||+||++
T Consensus 169 ~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk~~s~VAItD~G~eD~~al~klve~ik~~y~d~y~e~~~~wgg~~~g~ks~~ 248 (266)
T 2zkr_f 169 FLPALCRKMGVPYCIIKGKARLGHLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVA 248 (266)
T ss_dssp HHHHHHHHHTCCEEEESCHHHHHHHHTSSCCSEEEETTCSSTTTTHHHHHHHHHC-------------------------
T ss_pred HHHHHHHhcCCCEEEECCHHHHHHHhCCCCceEEEEeecCcchHHHHHHHHHHHHHhhhhhhhHHHHhhCCCCcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 025016 242 KTKAKEKLLAKEAAQRLT 259 (259)
Q Consensus 242 ~~~k~~k~~~~e~~~k~~ 259 (259)
+++++||++++|+|+|+|
T Consensus 249 ~~~~~~k~~~~e~~~k~~ 266 (266)
T 2zkr_f 249 RIAKLEKAKAKELATKLG 266 (266)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhHHHHhhcC
Confidence 999999999999999975
No 5
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.97 E-value=2.3e-34 Score=232.58 Aligned_cols=109 Identities=60% Similarity=0.937 Sum_probs=104.9
Q ss_pred HHHHHHHHHHcCCC--CccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchh
Q 025016 107 RLLKRAQAEAEGKT--VEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLG 184 (259)
Q Consensus 107 rLl~lA~kkaaGk~--~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG 184 (259)
||++.|+++|+|++ +|+++|++|.+|+++|+++|++|+++|||||+|+||++++.|||+||+++|||||+++|+.+||
T Consensus 2 rl~~~a~~~~~~~~~~~~~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 2 RLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLG 81 (113)
T ss_dssp CCCSSCCCHHHHHHHHTCSSSSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTH
T ss_pred ccHHHHHHHhcCCCCCCCCCCCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 57777888899998 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCceEEEEEeecCcccHHHHHHHHHHH
Q 025016 185 SIVHKKTASVLCLTTVKNEDKMEFSKILEAI 215 (259)
Q Consensus 185 ~avGkk~~a~VAitd~g~eDk~~l~kLve~i 215 (259)
++||+++|++|||+|+|+||+++|++|+|+|
T Consensus 82 ~a~G~k~~a~vai~d~~~ed~~~l~~l~e~~ 112 (113)
T 3jyw_G 82 TLVNQKTSAVAALTEVRAEDEAALAKLVSTI 112 (113)
T ss_dssp HHHCSSSCCSEEEECSCSSTTTTTHHHHTTT
T ss_pred HHHCCCCcEEEEEEeCCHHhHHHHHHHHHhh
Confidence 9999999999999999999999999999876
No 6
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.96 E-value=3.6e-29 Score=203.07 Aligned_cols=113 Identities=26% Similarity=0.438 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCc
Q 025016 101 RAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK 180 (259)
Q Consensus 101 k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK 180 (259)
..+|.+++|++|.+ +|+ ++.|+++|+++|++|+|+|||||+|+||++++.+||++|++++|||++++|+
T Consensus 4 l~~ki~~~L~~a~k--~gk---------l~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk 72 (121)
T 2lbw_A 4 LNKKVLKTVKKASK--AKN---------VKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSK 72 (121)
T ss_dssp HHHHHHHHHHHHHT--TTC---------EEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCH
T ss_pred HHHHHHHHHHHHHH--cCC---------ccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCH
Confidence 46789999999988 888 9999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCCc-eEEEEEeecCcccHHHHHHHHHHHHHhhhhhhHhhhhh
Q 025016 181 SRLGSIVHKKT-ASVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKK 229 (259)
Q Consensus 181 ~eLG~avGkk~-~a~VAitd~g~eDk~~l~kLve~i~~~y~d~y~e~~~~ 229 (259)
.+||++||+++ ++|++|+|.|..+. ++|.+++||+|+|||+++.
T Consensus 73 ~eLG~a~g~k~~~s~v~I~d~g~a~~-----~~~~~~~~y~~~y~~~~~~ 117 (121)
T 2lbw_A 73 QDLGAAGATKRPTSVVFIVPGSNKKK-----DGKNKEEEYKESFNEVVKE 117 (121)
T ss_dssp HHHHHHHTCSSCCSEEEECCSCTTGG-----GCSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEEEEEcCcchHH-----HHHHHHHHHHHHHHHHHHH
Confidence 99999999876 78999999986543 2788999999999999863
No 7
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.95 E-value=8.7e-28 Score=198.79 Aligned_cols=120 Identities=19% Similarity=0.327 Sum_probs=108.9
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEE
Q 025016 97 RPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 97 rPe~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~ 176 (259)
.|+...++.+++|++|.+ +|+ ++.|+++|+++|++|+++|||||+|+||++++.+||++|+++||||++
T Consensus 12 a~~~~~~ki~~~L~lA~k--~gk---------l~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~ 80 (134)
T 2ale_A 12 ADAALTQQILDVVQQAAN--LRQ---------LKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVF 80 (134)
T ss_dssp CCHHHHHHHHHHHHHHHH--TTC---------EEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHH--cCC---------cccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 456677889999999988 888 999999999999999999999999999999999999999999999999
Q ss_pred ECCccchhhhhcCCce-EEEEEeecCcccHHHHHHHHHHHHHhhhhhhHhhhhhc
Q 025016 177 VKGKSRLGSIVHKKTA-SVLCLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKW 230 (259)
Q Consensus 177 v~sK~eLG~avGkk~~-a~VAitd~g~eDk~~l~kLve~i~~~y~d~y~e~~~~w 230 (259)
++|+.+||++||++++ +||+|+|.+. ..+.++++.++++|++.+.|-++|.
T Consensus 81 v~sk~eLG~a~G~~~~~s~vaI~d~~~---s~~~~l~~~i~~~~~~~~~~~~~~~ 132 (134)
T 2ale_A 81 VPSRVALGRACGVSRPVIAASITTNDA---SAIKTQIYAVKDKIETLLILEHHHH 132 (134)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEEECCTT---CTTHHHHHHHHHHHHHHHHSSCCCC
T ss_pred ECCHHHHHHHhCCCCCeEEEEEEcCCh---HHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 9999999999999985 7899999643 4589999999999999998876553
No 8
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.92 E-value=1.6e-25 Score=181.37 Aligned_cols=107 Identities=32% Similarity=0.487 Sum_probs=99.4
Q ss_pred cCCcccHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCE
Q 025016 95 KYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPY 174 (259)
Q Consensus 95 kyrPe~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy 174 (259)
-..||+..+|.++||++| |+ ++.|+++|+++|++|+++|||||+|+||++++.+|+.+|++++|||
T Consensus 10 ~~~p~~l~~k~~~ll~~A-----gk---------l~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~ 75 (120)
T 1xbi_A 10 FKVPEEIQKELLDAVAKA-----QK---------IKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPY 75 (120)
T ss_dssp SCCCHHHHHHHHHHHHTC-----SE---------EEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCE
T ss_pred ccCCHHHHHHHHHHHHHc-----CC---------ccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCE
Confidence 347999999999999976 66 9999999999999999999999999999999999999999999999
Q ss_pred EEECCccchhhhhcCC-ceEEEEEeecCcccHHHHHHHHHHHHH
Q 025016 175 CIVKGKSRLGSIVHKK-TASVLCLTTVKNEDKMEFSKILEAIKA 217 (259)
Q Consensus 175 ~~v~sK~eLG~avGkk-~~a~VAitd~g~eDk~~l~kLve~i~~ 217 (259)
++++|+.+||++||++ .+++|||+|.|.+|. +.++++.+++
T Consensus 76 ~~v~sk~eLG~a~G~~~~~s~vaI~d~g~a~~--l~~l~~~i~~ 117 (120)
T 1xbi_A 76 AYVASKQDLGKAAGLEVAASSVAIINEGDAEE--LKVLIEKVNV 117 (120)
T ss_dssp EEESCHHHHHHHTTCSSCCSEEEEEECSCHHH--HHHHHHHHHH
T ss_pred EEeCCHHHHHHHhCCCCCEEEEEEeccchHHH--HHHHHHHHHH
Confidence 9999999999999999 699999999997765 8899888864
No 9
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.92 E-value=2.8e-25 Score=179.20 Aligned_cols=109 Identities=37% Similarity=0.550 Sum_probs=100.6
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEE
Q 025016 97 RPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 97 rPe~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~ 176 (259)
.|++..++..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|+||++++.+|+.+|++++|||++
T Consensus 7 ~p~~l~~~i~~~L~lA~k--ag~---------l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~ 75 (119)
T 1rlg_A 7 VPEDMQNEALSLLEKVRE--SGK---------VKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIY 75 (119)
T ss_dssp CCSHHHHHHHHHHHHHHH--HSE---------EEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHH--hCC---------eeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEE
Confidence 588889999999999998 787 999999999999999999999999999999889999999999999999
Q ss_pred ECCccchhhhhcCC-ceEEEEEeecCcccHHHHHHHHHHHHH
Q 025016 177 VKGKSRLGSIVHKK-TASVLCLTTVKNEDKMEFSKILEAIKA 217 (259)
Q Consensus 177 v~sK~eLG~avGkk-~~a~VAitd~g~eDk~~l~kLve~i~~ 217 (259)
++|+.+||++||++ .+++|||+|.|.++ ..++.|+|.+++
T Consensus 76 ~~sk~eLG~a~G~~~~~~~vaI~d~g~a~-~~~~~l~~~~~~ 116 (119)
T 1rlg_A 76 VKSKNDLGRAVGIEVPCASAAIINEGELR-KELGSLVEKIKG 116 (119)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEEEECGGGH-HHHHHHHHHHHT
T ss_pred eCCHHHHHHHhCCCCCeEEEEEecCchHH-HHHHHHHHHHHH
Confidence 99999999999999 69999999998665 567788777753
No 10
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.92 E-value=7.9e-25 Score=176.82 Aligned_cols=109 Identities=27% Similarity=0.431 Sum_probs=100.7
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEE
Q 025016 97 RPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 97 rPe~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~ 176 (259)
.|++..++..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|+||++++.+|+.+|++++|||++
T Consensus 9 ~p~~l~~~i~~~L~~A~k--ag~---------l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~ 77 (120)
T 1vq8_F 9 VPADLEDDALEALEVARD--TGA---------VKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIF 77 (120)
T ss_dssp CCHHHHHHHHHHHHHHHH--SSC---------EEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEE
T ss_pred CCHHHHHHHHHHHHHHHH--cCC---------EeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEE
Confidence 588889999999999998 888 999999999999999999999999999999899999999999999999
Q ss_pred ECCccchhhhhcCC-ceEEEEEeecCcccHHHHHHHHHHHHH
Q 025016 177 VKGKSRLGSIVHKK-TASVLCLTTVKNEDKMEFSKILEAIKA 217 (259)
Q Consensus 177 v~sK~eLG~avGkk-~~a~VAitd~g~eDk~~l~kLve~i~~ 217 (259)
++|+.+||++||++ .++++||+|.|.+ +..++.|.|.+++
T Consensus 78 ~~sk~eLG~a~G~~~~~~~vaI~d~g~a-~~~~~~l~~~~~~ 118 (120)
T 1vq8_F 78 VEQQDDLGHAAGLEVGSAAAAVTDAGEA-DADVEDIADKVEE 118 (120)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEESSCSSC-HHHHHHHHHHHHH
T ss_pred ECCHHHHHHHhCCCCCeEEEEEecCchH-HHHHHHHHHHHHh
Confidence 99999999999999 6999999999865 5567888877754
No 11
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.91 E-value=3e-25 Score=181.89 Aligned_cols=105 Identities=29% Similarity=0.369 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCc
Q 025016 101 RAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK 180 (259)
Q Consensus 101 k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK 180 (259)
-..+.+.+|+.|++ +|+ ++.|+++|+++|++|+|+|||||+|+||.+++.+||+||++++|||++++|+
T Consensus 8 i~~~l~~~L~~A~~--~gk---------l~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk 76 (126)
T 2xzm_U 8 LNEVLAKVIKSSNC--QDA---------ISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKR 76 (126)
T ss_dssp HHHHHHHHHTTTTS--SSC---------EEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCS
T ss_pred HHHHHHHHHHHHHH--cCC---------EeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCH
Confidence 34567788888888 888 9999999999999999999999999999899999999999999999999999
Q ss_pred cchhhhhcC----------Cc--eEEEEEeecCcc-cHHHHHHHHHHHH
Q 025016 181 SRLGSIVHK----------KT--ASVLCLTTVKNE-DKMEFSKILEAIK 216 (259)
Q Consensus 181 ~eLG~avGk----------k~--~a~VAitd~g~e-Dk~~l~kLve~i~ 216 (259)
.+||++||+ +. |+||+|+|+|+| +.++|+.|+|+++
T Consensus 77 ~~LG~a~G~~k~d~~g~~rk~v~~s~vaI~d~g~~~~~~~~~~l~~~~~ 125 (126)
T 2xzm_U 77 ASLGEYLGHFTANAKGEIKKVKGCSSLAIRKYAPEITEDEKKIIEGALK 125 (126)
T ss_dssp HHHHHHHTCCCBCTTCCBSCCCCCCEEEESSCCTTCCHHHHHHHTTSCB
T ss_pred HHHHHHHCCCccccccCcCceeeEEEEEEEecCcccCHHHHHHHHHHhc
Confidence 999999997 54 899999999999 5559999998764
No 12
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.91 E-value=2.1e-24 Score=175.36 Aligned_cols=108 Identities=39% Similarity=0.589 Sum_probs=98.1
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEE
Q 025016 97 RPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 97 rPe~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~ 176 (259)
.|++..++..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|+||++++.+|+.+|++++|||++
T Consensus 8 ~p~~l~~~i~~~L~lA~k--agk---------l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~ 76 (124)
T 2fc3_A 8 VPEDLAEKAYEAVKRARE--TGR---------IKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVY 76 (124)
T ss_dssp CCHHHHHHHHHHHHHHHH--HSE---------EEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHH--hCC---------ccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEE
Confidence 578889999999999998 787 999999999999999999999999999999899999999999999999
Q ss_pred ECCccchhhhhcCC-ceEEEEEeecCcccHHHHHHHHHHHH
Q 025016 177 VKGKSRLGSIVHKK-TASVLCLTTVKNEDKMEFSKILEAIK 216 (259)
Q Consensus 177 v~sK~eLG~avGkk-~~a~VAitd~g~eDk~~l~kLve~i~ 216 (259)
++|+.+||++||++ .+++|||+|.|.+ +..++.|.+.++
T Consensus 77 v~sk~eLG~a~G~~~~~~~vaI~d~g~a-~~~~~~l~~~~~ 116 (124)
T 2fc3_A 77 VPSKKRLGEAAGIEVAAASVAIIEPGDA-ETLVREIVEKVK 116 (124)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEEEECGGG-HHHHHHHHHHHH
T ss_pred ECCHHHHHHHhCCCCCEEEEEEECcchH-HHHHHHHHHHHH
Confidence 99999999999999 6999999999854 345666666654
No 13
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.90 E-value=1.6e-23 Score=170.38 Aligned_cols=105 Identities=27% Similarity=0.426 Sum_probs=93.1
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEEC
Q 025016 99 EDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 99 e~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
+...+|.+++|++|++ +|+ ++.|.++|+++|++|+++|||||+|+||++++.+|+.+|++++|||++++
T Consensus 13 ~~l~~kil~~L~lA~k--agk---------lv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~ 81 (122)
T 3o85_A 13 EELSLELLNLVKHGAS--LQA---------IKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHH--TTC---------EEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHH--hCC---------EeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEEC
Confidence 4456789999999999 898 99999999999999999999999999999988999999999999999999
Q ss_pred CccchhhhhcCCc-eEEEEEeecCcccHHHHHHHHHHH
Q 025016 179 GKSRLGSIVHKKT-ASVLCLTTVKNEDKMEFSKILEAI 215 (259)
Q Consensus 179 sK~eLG~avGkk~-~a~VAitd~g~eDk~~l~kLve~i 215 (259)
|+.+||++||+++ +++++|+|.+. -+..+.++-+.|
T Consensus 82 sk~eLG~a~Gk~~~vs~vaI~d~~~-~~~~~~~~~~~i 118 (122)
T 3o85_A 82 SKNALGRACNVSVPTIVASIGKHDA-LGNVVAEIVGKV 118 (122)
T ss_dssp CHHHHHHHTTCSSCCSEEEECCCTT-THHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCCEEEEEEEcccc-hHHHHHHHHHHH
Confidence 9999999999997 67899999985 444455554444
No 14
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.89 E-value=2.3e-23 Score=174.39 Aligned_cols=107 Identities=22% Similarity=0.428 Sum_probs=93.0
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEE
Q 025016 98 PEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 98 Pe~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v 177 (259)
|+...++.+++|++|.+ +|+ ++.|+++|+++|++|+++|||||+|++|++++.+||.+|++++|||+++
T Consensus 31 ~~~l~~ki~~~L~lA~k--agk---------l~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v 99 (144)
T 2jnb_A 31 DAHLTKKLLDLVQQSCN--YKQ---------LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFV 99 (144)
T ss_dssp CHHHHHHHHHHHHHHHH--TTC---------CCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHH--cCC---------ccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 45567788999999988 888 9999999999999999999999999999989999999999999999999
Q ss_pred CCccchhhhhcCCce-EEEEEeecCccc-HHHHHHHHHHH
Q 025016 178 KGKSRLGSIVHKKTA-SVLCLTTVKNED-KMEFSKILEAI 215 (259)
Q Consensus 178 ~sK~eLG~avGkk~~-a~VAitd~g~eD-k~~l~kLve~i 215 (259)
+|+.+||++||++++ +++||+|.+.+| ...+.++.+.|
T Consensus 100 ~sk~eLG~a~Gk~~~vs~vaI~~~~~s~i~~~~~~~~~~i 139 (144)
T 2jnb_A 100 RSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSI 139 (144)
T ss_dssp SCSHHHHHHHTCSSCCSEEEEECCTTCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCceEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 999999999999985 589999987654 33344444444
No 15
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.88 E-value=3.5e-22 Score=164.93 Aligned_cols=97 Identities=24% Similarity=0.426 Sum_probs=88.9
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEE
Q 025016 97 RPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 97 rPe~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~ 176 (259)
-|....++..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|++|++++.+|+.+|++++|||++
T Consensus 21 ~~~~l~~ki~~~L~lA~k--agk---------lv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~ 89 (135)
T 2aif_A 21 ASPDLNNKIINLVQQACN--YKQ---------LRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVF 89 (135)
T ss_dssp CCSHHHHHHHHHHHHHHH--TTC---------EEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEE
T ss_pred ccHHHHHHHHHHHHHHHH--cCC---------cccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEE
Confidence 345567889999999998 898 999999999999999999999999999999889999999999999999
Q ss_pred ECCccchhhhhcCCce-EEEEEeecCccc
Q 025016 177 VKGKSRLGSIVHKKTA-SVLCLTTVKNED 204 (259)
Q Consensus 177 v~sK~eLG~avGkk~~-a~VAitd~g~eD 204 (259)
++|+.+||++||+++. +++||+|.+.+|
T Consensus 90 v~sk~eLG~a~G~~~~v~~vaI~d~~~s~ 118 (135)
T 2aif_A 90 VRSKVALGRACGVSRPVIAAAITSKDGSS 118 (135)
T ss_dssp ESCHHHHHHHTTCSSCCSEEEEECCTTCT
T ss_pred ECCHHHHHHHhCCCCcEEEEEEEcCCcHH
Confidence 9999999999999974 489999988644
No 16
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.87 E-value=1.4e-22 Score=159.28 Aligned_cols=89 Identities=24% Similarity=0.277 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCcc
Q 025016 102 AAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKS 181 (259)
Q Consensus 102 ~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
.+|..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|++|+ ...+|+.+|+.++|||++++|+.
T Consensus 4 ~~ki~~~L~la~k--agk---------~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~vp~~~~~s~~ 71 (101)
T 3v7q_A 4 GMEWFPLLGLANR--ARK---------VVSGEDLVIKEIRNARAKLVLLTEDASSN-TAKKVTDKCNYYKVPYKKVESRA 71 (101)
T ss_dssp CCTHHHHHHHHHH--TTC---------EEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHTTCCEEEESCHH
T ss_pred cchhHHHhhhhhh--hhh---------cccchhhhHHHHhcCceeEEEEecccccc-chhhhcccccccCCCeeeechHH
Confidence 4688999999999 999 99999999999999999999999999997 56779999999999999999999
Q ss_pred chhhhhcCCceEEEEEeecCc
Q 025016 182 RLGSIVHKKTASVLCLTTVKN 202 (259)
Q Consensus 182 eLG~avGkk~~a~VAitd~g~ 202 (259)
+||++||+..++++||+|.|.
T Consensus 72 eLG~A~Gk~~~~~~ai~D~g~ 92 (101)
T 3v7q_A 72 VLGRSIGKEARVVVAVTDQGF 92 (101)
T ss_dssp HHHHHTTSSCCSEEEECCHHH
T ss_pred HHHhhhCccceEEEEEeccHH
Confidence 999999999888999998873
No 17
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.87 E-value=2.2e-22 Score=157.85 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCcc
Q 025016 102 AAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKS 181 (259)
Q Consensus 102 ~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
.+|..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|++|. .+.+|+.+|++++|||++++|+.
T Consensus 3 ~~ki~~~L~la~k--agk---------~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~s~~ 70 (101)
T 3on1_A 3 EAKWLSLLGLAAR--ARQ---------LLTGEEQVVKAVQNGQVTLVILSSDAGIH-TKKKLLDKCGSYQIPVKVVGNRQ 70 (101)
T ss_dssp CCHHHHHHHHHHH--TTC---------EEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHH
T ss_pred HHHHHHHHHHHHH--HCC---------EeECHHHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCHH
Confidence 3688999999999 998 99999999999999999999999999996 56789999999999999999999
Q ss_pred chhhhhcCCceEEEEEeecCc
Q 025016 182 RLGSIVHKKTASVLCLTTVKN 202 (259)
Q Consensus 182 eLG~avGkk~~a~VAitd~g~ 202 (259)
+||++||+..++++||+|.|.
T Consensus 71 eLG~a~Gk~~~~~vai~d~g~ 91 (101)
T 3on1_A 71 MLGRAIGKHERVVIGVKDAGF 91 (101)
T ss_dssp HHHHHTTSSCCSEEEECCHHH
T ss_pred HHHHHhCCcCeEEEEEECccH
Confidence 999999999889999998873
No 18
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=5.1e-21 Score=152.47 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEE-CCcc
Q 025016 103 AKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV-KGKS 181 (259)
Q Consensus 103 eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v-~sK~ 181 (259)
++..++|++|.+ +|+ ++.|.++|+++|++|+++|||||+|+ |.+++.+|+.+|++++|||+++ +|+.
T Consensus 7 ~~i~~~L~la~k--agk---------l~~G~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~ 74 (110)
T 3cpq_A 7 MDVNKAIRTAVD--TGK---------VILGSKRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSL 74 (110)
T ss_dssp CHHHHHHHHHHH--HSE---------EEESHHHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHH
T ss_pred HHHHHHHHHHHH--cCC---------eeeCHHHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHH
Confidence 578899999998 788 99999999999999999999999999 6689999999999999998887 9999
Q ss_pred chhhhhcCCce-EEEEEeecCccc
Q 025016 182 RLGSIVHKKTA-SVLCLTTVKNED 204 (259)
Q Consensus 182 eLG~avGkk~~-a~VAitd~g~eD 204 (259)
+||++||++++ +++||+|.|..+
T Consensus 75 eLG~a~G~~~~~s~vaI~d~g~a~ 98 (110)
T 3cpq_A 75 ELGAVCGKPFPVAALLVLDEGLSN 98 (110)
T ss_dssp HHHHHTTCSSCCSEEEEEECTTCC
T ss_pred HHHHHhCCccceEEEEEecCCHHH
Confidence 99999999964 699999999654
No 19
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.84 E-value=6.4e-21 Score=149.35 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEE-CCccc
Q 025016 104 KKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV-KGKSR 182 (259)
Q Consensus 104 K~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v-~sK~e 182 (259)
...++|++|.+ +|+ ++.|.++|+++|++|+++|||||+|+ |.+++.+|+.+|++++|||+++ +|+.+
T Consensus 3 ~i~~~L~la~k--agk---------l~~G~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~vp~~~~~~s~~e 70 (101)
T 1w41_A 3 DFAFELRKAQD--TGK---------IVMGARKSIQYAKMGGAKLIIVARNA-RPDIKEDIEYYARLSGIPVYEFEGTSVE 70 (101)
T ss_dssp CHHHHHHHHHH--HSE---------EEESHHHHHHHHHHTCCSEEEEETTS-CHHHHHHHHHHHHHHTCCEEEESSCHHH
T ss_pred hHHHHHHHHHH--cCC---------EeECHHHHHHHHHcCCCcEEEEeCCC-CHHHHHHHHHHHHhcCCCEEEecCCHHH
Confidence 46789999988 788 99999999999999999999999996 5588899999999999998886 99999
Q ss_pred hhhhhcCCc-eEEEEEeecCccc
Q 025016 183 LGSIVHKKT-ASVLCLTTVKNED 204 (259)
Q Consensus 183 LG~avGkk~-~a~VAitd~g~eD 204 (259)
||++||+++ ++++||+|.|..+
T Consensus 71 LG~a~G~~~~~~~vai~d~g~a~ 93 (101)
T 1w41_A 71 LGTLLGRPHTVSALAVVDPGASR 93 (101)
T ss_dssp HHHHTTCSSCCCEEEEEECTTCC
T ss_pred HHHHhCCCCcEEEEEEecCCHHH
Confidence 999999996 5699999999654
No 20
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.83 E-value=2.4e-20 Score=145.71 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEE-CCccch
Q 025016 105 KERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV-KGKSRL 183 (259)
Q Consensus 105 ~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v-~sK~eL 183 (259)
..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|+++ +++.+|+.+|++++|||+.+ +|+.+|
T Consensus 3 i~~~L~la~k--agk---------~v~G~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eL 70 (99)
T 3j21_Z 3 LAFELRKAME--TGK---------VVLGSNETIRLAKTGGAKLIIVAKNAPK-EIKDDIYYYAKLSDIPVYEFEGTSVEL 70 (99)
T ss_dssp HHHHHHHHHH--SSC---------EEESHHHHHHHHHHTCCSEEEEECCCCH-HHHHHHHHHHHHTTCCEEEECCCSCGG
T ss_pred HHHHHHHHHH--hCC---------EeECHHHHHHHHHcCCccEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHH
Confidence 3567899998 898 9999999999999999999999999755 78899999999999998665 999999
Q ss_pred hhhhcCCc-eEEEEEeecCcccH
Q 025016 184 GSIVHKKT-ASVLCLTTVKNEDK 205 (259)
Q Consensus 184 G~avGkk~-~a~VAitd~g~eDk 205 (259)
|++||++. +++|||+|.|..|.
T Consensus 71 G~a~Gk~~~~~~vaI~d~g~a~~ 93 (99)
T 3j21_Z 71 GTLLGKPFVVASLAIVDPGESKI 93 (99)
T ss_dssp GGTTCSTTCSEEEEESSCSSCSH
T ss_pred HHHHCCCCCEEEEEEEccchHHH
Confidence 99999996 68999999997654
No 21
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.83 E-value=6e-21 Score=150.71 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEE-EECCc
Q 025016 102 AAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYC-IVKGK 180 (259)
Q Consensus 102 ~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~-~v~sK 180 (259)
.++..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|++|. ...+++.+|+.++|||+ +++|+
T Consensus 7 ~~~i~~~L~la~k--agk---------lv~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~ 74 (104)
T 4a18_G 7 QDNIQSKLALVMR--SGK---------ATLGYKSTIKAIRNGTAKLVFISNNCPTV-RKSEIEYYASLAQISIHHFVGSN 74 (104)
T ss_dssp -CHHHHHHHHHHH--HSE---------EEESHHHHHHHHHHTCCCEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSCH
T ss_pred HHHHHHHHHHHHH--hCC---------EeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEecCCH
Confidence 5688999999999 898 99999999999999999999999999996 56889999999999999 69999
Q ss_pred cchhhhhcCCc-eEEEEEeecCccc
Q 025016 181 SRLGSIVHKKT-ASVLCLTTVKNED 204 (259)
Q Consensus 181 ~eLG~avGkk~-~a~VAitd~g~eD 204 (259)
.+||++||+.. +++|||+|.|..|
T Consensus 75 ~eLG~a~Gk~~~~~~vaI~D~G~a~ 99 (104)
T 4a18_G 75 VELGTACGKYHRCSTMAILDAGDSD 99 (104)
T ss_dssp HHHHHHTTCSSCCSEEEEEECSSCG
T ss_pred HHHHHHhCCccCEEEEEEeccchHH
Confidence 99999999997 5789999999765
No 22
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.83 E-value=9.3e-21 Score=144.05 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=65.4
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCc-eEEEEEe
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKT-ASVLCLT 198 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~-~a~VAit 198 (259)
++.|+++|+++|++|+++|||||+|+|| +++.+|+++|++++|||++++|+.+||++||+++ ++++||+
T Consensus 12 ~~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~~~~~~ai~ 81 (82)
T 3v7e_A 12 IIIGTKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAII 81 (82)
T ss_dssp EEESHHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSSCCSEEEEE
T ss_pred eeEcHHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEEEEEe
Confidence 9999999999999999999999999999 7889999999999999999999999999999997 5677775
No 23
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.82 E-value=1.5e-20 Score=151.20 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEE-CC
Q 025016 101 RAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV-KG 179 (259)
Q Consensus 101 k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v-~s 179 (259)
..++..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|++| .++.+|+.+|..++|||+++ +|
T Consensus 10 ~~~~i~~~L~la~k--agk---------~~~G~~~t~kai~~gkakLVilA~D~~~-~~~~~i~~~c~~~~ipv~~~~~s 77 (112)
T 3iz5_f 10 SGENINNKLQLVMK--SGK---------YTLGYKTVLKTLRSSLGKLIILANNCPP-LRKSEIETYAMLAKISVHHFHGN 77 (112)
T ss_dssp GGGHHHHHHHHHHT--TCE---------EEESHHHHHHHHHTTCCSEEEECSCCCH-HHHHHHHHHHHHTTCCEECCCCT
T ss_pred cHHHHHHHHHHHHH--hCC---------eeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCcEEEeCCC
Confidence 36789999999999 898 9999999999999999999999999999 57788999999999999999 99
Q ss_pred ccchhhhhcCCc-eEEEEEeecCcccH
Q 025016 180 KSRLGSIVHKKT-ASVLCLTTVKNEDK 205 (259)
Q Consensus 180 K~eLG~avGkk~-~a~VAitd~g~eDk 205 (259)
+.+||++||+.. +++|||+|.|..|.
T Consensus 78 ~~eLG~A~Gk~~~v~~vaI~D~G~a~~ 104 (112)
T 3iz5_f 78 NVDLGTACGKYYRVCCLSILDPGDSDI 104 (112)
T ss_dssp TCTHHHHHCTTCSSCEEEEECCSCCSH
T ss_pred HHHHHHHhCCccceEEEEEeccchHHH
Confidence 999999999985 68899999997654
No 24
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.81 E-value=1.8e-20 Score=148.29 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEE-EECC
Q 025016 101 RAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYC-IVKG 179 (259)
Q Consensus 101 k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~-~v~s 179 (259)
..++..++|++|++ +|+ ++.|.++|+++|++|+++|||||+|++|. .+.+++.+|+.++|||+ +++|
T Consensus 6 ~~~~i~~~L~la~k--agk---------~v~G~~~v~kai~~gkaklVilA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s 73 (105)
T 3u5e_c 6 SQESINQKLALVIK--SGK---------YTLGYKSTVKSLRQGKSKLIIIAANTPVL-RKSELEYYAMLSKTKVYYFQGG 73 (105)
T ss_dssp ---CHHHHHHHHHT--TSE---------EEESHHHHHHHHHTTCCSEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSC
T ss_pred HHHHHHHHHHHHHH--hCC---------eeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCC
Confidence 46789999999998 888 99999999999999999999999999985 66889999999999999 6999
Q ss_pred ccchhhhhcCCc-eEEEEEeecCcccH
Q 025016 180 KSRLGSIVHKKT-ASVLCLTTVKNEDK 205 (259)
Q Consensus 180 K~eLG~avGkk~-~a~VAitd~g~eDk 205 (259)
+.+||++||+.. ++++||+|.|..|.
T Consensus 74 ~~eLG~A~Gk~~~~~~vaI~D~G~a~~ 100 (105)
T 3u5e_c 74 NNELGTAVGKLFRVGVVSILEAGDSDI 100 (105)
T ss_dssp HHHHHHHTTCSSCCSEEEEEECCSCCT
T ss_pred HHHHHHHhCCcccEEEEEEeccchHHH
Confidence 999999999986 56899999997664
No 25
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.77 E-value=4.2e-19 Score=148.66 Aligned_cols=102 Identities=23% Similarity=0.304 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhh--hcCCCEEEECCc
Q 025016 103 AKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCR--KMEIPYCIVKGK 180 (259)
Q Consensus 103 eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~--~~~VPy~~v~sK 180 (259)
...+.+|..|.+ +|+ |+.|+++++++|++|+++|||||.|++|.+++.++++||+ +++|||+++.|+
T Consensus 26 ~aL~~vLk~A~~--~g~---------l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~ 94 (143)
T 3u5c_M 26 DALKVVLRTALV--HDG---------LARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADA 94 (143)
T ss_dssp HHHHHHHHHHHH--TTC---------EEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCH
T ss_pred HHHHHHHHHHHH--cCC---------EeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCH
Confidence 456778888988 888 9999999999999999999999999998899999999999 999999999999
Q ss_pred cchhhhhcCC------------ceEEEEEeecCcccHHHHHHHHHHHH
Q 025016 181 SRLGSIVHKK------------TASVLCLTTVKNEDKMEFSKILEAIK 216 (259)
Q Consensus 181 ~eLG~avGkk------------~~a~VAitd~g~eDk~~l~kLve~i~ 216 (259)
.+||++||.. .|+|++|+|.|.+.+ .++-|.+.++
T Consensus 95 keLG~a~Gl~k~d~~Gk~rkVv~~s~v~I~d~G~~~~-~~~~l~~~~~ 141 (143)
T 3u5c_M 95 KQLGEWAGLGKIDREGNARKVVGASVVVVKNWGAETD-ELSMIMEHFS 141 (143)
T ss_dssp HHHHHHSSCCCCSSSSCCSCCCCCSCEEESCCCCCSH-HHHHHHHHHH
T ss_pred HHHhHHhCcCccccCCCccccceeEEEEEcccchhhH-HHHHHHHHHh
Confidence 9999999952 278999999997543 5566655554
No 26
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.72 E-value=1.7e-18 Score=141.43 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEE-EECCc
Q 025016 102 AAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYC-IVKGK 180 (259)
Q Consensus 102 ~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~-~v~sK 180 (259)
.++..++|++|++ +|+ +++|.++|+++|++|+++|||||+|++| .++.+|+.+|...++|+. +++|+
T Consensus 12 ~~~i~~~L~lA~k--aGk---------lv~G~~~v~kaIr~gkakLVIiA~Das~-~~~~ki~~~~~~~~~~V~~~~~sk 79 (125)
T 3vi6_A 12 LESINSRLQLVMK--SGK---------YVLGYKQTLKMIRQGKAKLVILANNCPA-LRKSEIEYYAMLAKTGVHHYSGNN 79 (125)
T ss_dssp SSCSHHHHHHHHH--HSE---------EEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHTTCEEEECSSCH
T ss_pred HHHHHHHHHHHHH--hCC---------eeeCHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHhCCCcEEEcCCH
Confidence 4677899999999 898 9999999999999999999999999999 577889999887777754 58999
Q ss_pred cchhhhhcCCce-EEEEEeecCcccH
Q 025016 181 SRLGSIVHKKTA-SVLCLTTVKNEDK 205 (259)
Q Consensus 181 ~eLG~avGkk~~-a~VAitd~g~eDk 205 (259)
.+||.+||+..+ +++||+|.|..|.
T Consensus 80 ~eLG~A~Gk~~~v~~vaI~D~G~a~~ 105 (125)
T 3vi6_A 80 IELGTACGKYYRVCTLAIIDPGDSDI 105 (125)
T ss_dssp HHHHHHTTCSSCCCEEEEEECTTCCC
T ss_pred HHHHHHhCCcccEEEEEEeCchhHHH
Confidence 999999999975 4899999996544
No 27
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=135.41 Aligned_cols=107 Identities=16% Similarity=0.275 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHH--HhCCccEEEEeCCCC-chhhHhhHH-----HHhhhcC
Q 025016 100 DRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI--EQNKAQLVVIAHDVD-PIELVVWLP-----ALCRKME 171 (259)
Q Consensus 100 ~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~I--ekkKAkLVVIA~Dvs-P~elv~~Lp-----aLC~~~~ 171 (259)
+...+.+.+|..|.. .++ ++.|+++++++| +++.+.|||||.|+| |..+..|+| +||.+++
T Consensus 18 ~l~~al~evLk~A~~--~~~---------l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~ 86 (165)
T 2kg4_A 18 KVGDALEEVLSKALS--QRT---------ITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCEND 86 (165)
T ss_dssp HHHHHHHHHHHHHHH--HTC---------EEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH--cCC---------eeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcC
Confidence 345677788888877 566 999999999999 999999999999997 666655655 9999999
Q ss_pred CCEEEECCccchhhhhcC---------------CceEEEEEeecCccc--HHHHHHHHHHHHH
Q 025016 172 IPYCIVKGKSRLGSIVHK---------------KTASVLCLTTVKNED--KMEFSKILEAIKA 217 (259)
Q Consensus 172 VPy~~v~sK~eLG~avGk---------------k~~a~VAitd~g~eD--k~~l~kLve~i~~ 217 (259)
|||++|.|+.+||++||. ..|+||+|+|.|.+. ..+++.|++.+++
T Consensus 87 Ip~i~V~s~k~LG~a~Gi~~~~~~~~~d~~g~~r~~scv~V~~~g~~s~~~~a~~~l~~~~~e 149 (165)
T 2kg4_A 87 INILRVSNPGRLAELLLLETDAGPAASEGAEQPPDLHCVLVTNPHSSQWKDPALSQLICFCRE 149 (165)
T ss_dssp CCEEEESCHHHHHHHHHHTTTCSSCCCCSSCCCSCSCEEEEECCSSCCCCCHHHHHHHHHHHH
T ss_pred CCEEEECCHHHHHHHHCCcccccccccccCCCcccceEEEEeccccccccchHHHHHHHHHHH
Confidence 999999999999999995 128999999999765 3567888777754
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=99.08 E-value=8.9e-10 Score=92.37 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhC--CccEEEEeCCCCc------hhhHhhHHHHhhhcCCCEEE
Q 025016 105 KERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQN--KAQLVVIAHDVDP------IELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 105 ~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~Iekk--KAkLVVIA~DvsP------~elv~~LpaLC~~~~VPy~~ 176 (259)
.+..|..|.. .+- |..|+.++.+++.+. .|.|+|+|.|++. ...+..+.+||.+++||++.
T Consensus 13 LqeVLk~Al~--~dg---------L~~Gl~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIk 81 (146)
T 3cg6_A 13 LHELLLSAQR--QGC---------LTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVR 81 (146)
T ss_dssp HHHHHHHHHH--HTC---------EEESHHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHH--hCC---------ccccHHHHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEE
Confidence 3445666665 443 999999999999997 9999999999982 24556689999999999999
Q ss_pred ECCccchhhhhcC------C-ceEEEEEeecCccc--HHHHHHHHHHHHHh
Q 025016 177 VKGKSRLGSIVHK------K-TASVLCLTTVKNED--KMEFSKILEAIKAN 218 (259)
Q Consensus 177 v~sK~eLG~avGk------k-~~a~VAitd~g~eD--k~~l~kLve~i~~~ 218 (259)
|.+..+||+++|+ . .|+||.|+|.|.++ ..+++.|.+.+++.
T Consensus 82 Vdd~kkLgew~Gk~d~~g~pr~~sCvvV~d~g~e~~~s~al~~l~~y~~e~ 132 (146)
T 3cg6_A 82 VGDVQRLAAIVGSDEEGGAPGDLHCILISNPNEDTWKDPALEKLSLFCEES 132 (146)
T ss_dssp ECCHHHHHHHC----------CCSEEEEECCC---CCCHHHHHHHHHHHHH
T ss_pred eCchhHHHHHhCCcCCCCCCCCCEEEEEecCCcccccCHHHHHHHHHHHHh
Confidence 9999999999994 1 28899999999762 44678887777653
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=98.89 E-value=1.2e-08 Score=87.11 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhC--CccEEEEeCCCC-chh-----hHhhHHHHhhhcCCCEEEE
Q 025016 106 ERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQN--KAQLVVIAHDVD-PIE-----LVVWLPALCRKMEIPYCIV 177 (259)
Q Consensus 106 ~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~Iekk--KAkLVVIA~Dvs-P~e-----lv~~LpaLC~~~~VPy~~v 177 (259)
+..|..|.. .+. |..|+.++.+++.+. .|.|+|+|.|++ +-+ .+..+.+||.+++||++.|
T Consensus 35 qeVLk~Al~--~dg---------L~~Gl~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV 103 (167)
T 3ffm_A 35 HELLLSAQR--QGC---------LTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRV 103 (167)
T ss_dssp HHHHHHHHH--TTC---------EEESHHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHH--hCC---------ccccHHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEEe
Confidence 445555655 444 999999999999995 899999999985 222 3566899999999999999
Q ss_pred CCccchhhhhcCC-------ceEEEEEeecCccc--HHHHHHHHHHHHH
Q 025016 178 KGKSRLGSIVHKK-------TASVLCLTTVKNED--KMEFSKILEAIKA 217 (259)
Q Consensus 178 ~sK~eLG~avGkk-------~~a~VAitd~g~eD--k~~l~kLve~i~~ 217 (259)
.+..+||+++|+. .|+||.|+|.|++. ..+|++|+..-.+
T Consensus 104 ~d~kkLgew~G~~~~~~k~~~csCVlVtd~ge~s~k~~AL~~l~~fCee 152 (167)
T 3ffm_A 104 GDVQRLAAIVGAGEEAGAPGDLHCILISNPNEDAWKDPALEKLSLFCEE 152 (167)
T ss_dssp SCHHHHHHHHTTSCCSSSCSCCSEEEEECSSSSCCCCHHHHHHHHHHHH
T ss_pred CCcchHHHHhCcCCCCCCCCccEEEEECCCCcccccCHHHHHHHHHHHH
Confidence 9999999999952 28999999999754 2568887766554
No 30
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=92.66 E-value=0.48 Score=39.68 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=50.9
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCch--------------------------------------------hhHhhHH
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPI--------------------------------------------ELVVWLP 164 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~--------------------------------------------elv~~Lp 164 (259)
..+|+++|.++++.|-+..++|..|..-. .++.+|.
T Consensus 47 ~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~L~ 126 (166)
T 3ir9_A 47 VAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDIVDEFS 126 (166)
T ss_dssp EEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEEEEHHHHHH
T ss_pred EEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhHHHHHHHHH
Confidence 89999999999999999999999987432 3567889
Q ss_pred HHhhhcCCCEEEECCccchhhhh
Q 025016 165 ALCRKMEIPYCIVKGKSRLGSIV 187 (259)
Q Consensus 165 aLC~~~~VPy~~v~sK~eLG~av 187 (259)
..++.+|.-+.+|.+..+-|.-+
T Consensus 127 e~~~~~G~~v~ivs~~~eeG~ql 149 (166)
T 3ir9_A 127 ELADKSNAKVVFVSTDFDEGSQL 149 (166)
T ss_dssp HHHHHTTCEEEEECSCSHHHHHH
T ss_pred HHHHhcCCEEEEECCCChhHHHH
Confidence 99999999999999998877644
No 31
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=85.18 E-value=1.2 Score=35.63 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=55.9
Q ss_pred eeecchHHHHHHHHhCCccEEEEeCCC----Cc---hhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeec
Q 025016 128 VVKYGLNHVTYLIEQNKAQLVVIAHDV----DP---IELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTV 200 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~Dv----sP---~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~ 200 (259)
...+|..+|.++++.|-+..++|..|. +| ..++. |...++.+|.-+.++.+..+-|.-+ +..-.+.||.-.
T Consensus 38 ~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G~qL-~~~gGIaAiLRy 115 (124)
T 1x52_A 38 RAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSGEQL-SQLTGVAAILRF 115 (124)
T ss_dssp GEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHHHHH-HTTTTEEEEESS
T ss_pred cEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccHHHH-hcCCCEEEEEec
Confidence 388999999999999999999999874 22 12445 7888899999999999998888666 344456666654
No 32
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=84.99 E-value=6 Score=36.47 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=49.4
Q ss_pred eeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhh
Q 025016 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGS 185 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~ 185 (259)
....|+.+|.++++.|.+..++|..| . +++..|...+..+|--+.++.+..+-|.
T Consensus 299 ~a~yG~~eV~~Al~~GaVetLlv~d~--r-d~~~~L~e~a~~~G~~V~ivs~~~~~g~ 353 (373)
T 3agk_A 299 MIVYGEKDVEAALEMGAVKTLLIHES--R-EDLEEWVEKAKSSGAQVIVVPESLAEAE 353 (373)
T ss_dssp CEEESHHHHHHHHHTTCEEEEEEETT--C-TTHHHHHHHHTTTTCEEEEECTTSTTHH
T ss_pred cEeeCHHHHHHHHHhCCccEEEEeCC--h-hHHHHHHHHHHHcCCEEEEECCCCccHH
Confidence 38899999999999999999999998 3 5778899999999999999999877773
No 33
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=84.40 E-value=4.1 Score=38.95 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=56.2
Q ss_pred eeecchHHHHHHHHhCCccEEEEeCCCCc---------------------------------------------hhhHhh
Q 025016 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVDP---------------------------------------------IELVVW 162 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~DvsP---------------------------------------------~elv~~ 162 (259)
....|..+|.++++.|-+..++|..|.+- ..++.+
T Consensus 305 ~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve~ 384 (441)
T 3e20_C 305 KYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEW 384 (441)
T ss_dssp CCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTTTCCC-----------------CCEEHHHH
T ss_pred cEEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCccccccccccccccCcccCccceecchhhHHHH
Confidence 38899999999999999999999988740 135667
Q ss_pred HHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeec
Q 025016 163 LPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTV 200 (259)
Q Consensus 163 LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~ 200 (259)
|..+++.+|.-+.+|.+..+-|.-+-+..-...||.-.
T Consensus 385 l~e~a~~~G~~v~~vs~~~~eG~ql~~~fgGIaaiLRy 422 (441)
T 3e20_C 385 LAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRY 422 (441)
T ss_dssp HHHHGGGGSCCEEEECTTSHHHHHHHHTSTTEEEECSS
T ss_pred HHHHHHHcCCEEEEECCCCHHHHHHHHcCCcEEEEEec
Confidence 89999999999999999998886542222234555443
No 34
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=83.66 E-value=1.9 Score=35.91 Aligned_cols=47 Identities=26% Similarity=0.230 Sum_probs=38.3
Q ss_pred chHHHHHHHHhCCccEEEEeCC---CCc-hhhHhhHHHHhhhcCCCEEEEC
Q 025016 132 GLNHVTYLIEQNKAQLVVIAHD---VDP-IELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~D---vsP-~elv~~LpaLC~~~~VPy~~v~ 178 (259)
|..++..+|.+|++.|||--.| ..| ..=...|...|-.++|||+.--
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~l 120 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNV 120 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSH
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCH
Confidence 6779999999999999999998 444 3334558999999999997533
No 35
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=83.07 E-value=2.2 Score=39.53 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=55.2
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCc---hhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEe
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDP---IELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLT 198 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP---~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAit 198 (259)
...|..+|.++++.|-+.-++|..|..- .+.+..|...++.+|--+.++.+..+-|.-+ ...-.++||.
T Consensus 281 a~yG~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~qL-~~lgGiaAiL 352 (357)
T 3j15_A 281 VAYGLKEVEEAVNYGAVETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSSEHEGGEKL-KALGGLAALL 352 (357)
T ss_dssp EEESTHHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSSSTTHHHH-HHHCSEEEEE
T ss_pred EEeCHHHHHHHHHhCCCcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECCCCCcchhh-hcCCcEEEEE
Confidence 8899999999999999999999977543 3467889999999999999999988877655 2222445554
No 36
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=82.17 E-value=9.8 Score=35.87 Aligned_cols=98 Identities=17% Similarity=0.270 Sum_probs=68.0
Q ss_pred hhhHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCC-------
Q 025016 83 KNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVD------- 155 (259)
Q Consensus 83 ~~~a~~l~kl~~kyrPe~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~Dvs------- 155 (259)
.+...++++.+..---+++..+..+++..-....+ +.+.....|+.+|.++++.|.+..++|..|..
T Consensus 261 ~~gl~E~l~~~~~~l~~~k~~~e~~ll~~f~~~l~------~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~r 334 (437)
T 1dt9_A 261 ENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEIS------QDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLH 334 (437)
T ss_dssp THHHHHHHHHHSSTTTSHHHHHHHHHHHHHHHHHH------SSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC-
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCCCcEEecHHHHHHHHHhCCccEEEEecCcccceEEEE
Confidence 44555666666554555555555555554332111 11233889999999999999999999998865
Q ss_pred -c-----------------------------------hhhHhhHHHHhhhcCCCEEEECCccchhhh
Q 025016 156 -P-----------------------------------IELVVWLPALCRKMEIPYCIVKGKSRLGSI 186 (259)
Q Consensus 156 -P-----------------------------------~elv~~LpaLC~~~~VPy~~v~sK~eLG~a 186 (259)
+ .+++.+|...++.+|-.+.++.+..+-|.-
T Consensus 335 ~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~ve~L~e~~~~~G~~V~ivs~~~e~G~q 401 (437)
T 1dt9_A 335 CQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQ 401 (437)
T ss_dssp --------CCCBCTTCSSCCCCCC-----------CCCBHHHHHHHTCTTTTSCEEEECSSSHHHHH
T ss_pred cCCCCceeeeeeccccccccccccCcccCccccccccccHHHHHHHHHHHcCCEEEEECCCChhHHH
Confidence 2 023556888899999999999999888854
No 37
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=81.99 E-value=4.7 Score=37.26 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=75.0
Q ss_pred CChhhHHHHHhhh--hcCCcccHHHHHHHHHHHHHHHH-cCCCCccCCCceeecchHHHHHHHHhCCccEEEEeCCCC-c
Q 025016 81 LDKNLASSLFKLL--LKYRPEDRAAKKERLLKRAQAEA-EGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVD-P 156 (259)
Q Consensus 81 ld~~~a~~l~kl~--~kyrPe~k~eK~~rLl~lA~kka-aGk~~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~Dvs-P 156 (259)
.+.+...++++.. ..---+++..+..+++..-.... .+ ...+|..+|.++++.|-+..++|..|.. .
T Consensus 224 ~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d---------~~~YG~~eV~~Ale~GAVetLlV~d~l~rr 294 (347)
T 2qi2_A 224 TDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKD---------MGVYGRDQTESALQMGALSDLIITDEMFRT 294 (347)
T ss_dssp SSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT---------CEEESHHHHHHHHHTTCEEEEEEEHHHHTS
T ss_pred CccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CEEEcHHHHHHHHHcCCCeEEEEecccccc
Confidence 3444555555544 32233444445555555433211 12 3889999999999999999999999875 3
Q ss_pred hhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecC
Q 025016 157 IELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVK 201 (259)
Q Consensus 157 ~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g 201 (259)
.+ +..|...|+.+|--+.++.+..+-|.-+ ...-..+||.-..
T Consensus 295 ~~-~~~L~e~~~~~G~~V~ivs~~~e~G~qL-~~lGGIAaiLRy~ 337 (347)
T 2qi2_A 295 ED-GRRSLSIAQTVGTRIHIVSVSNDPGQIV-KKFGGFAGILRYR 337 (347)
T ss_dssp HH-HHHHHHHHHHHTCEEEEECTTSHHHHHH-HHTTSEEEEECSC
T ss_pred hh-HHHHHHHHHHcCCEEEEECCCCcchHHH-HhcCCEEEEEecc
Confidence 33 6778999999999999999998888666 3333566676543
No 38
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=81.91 E-value=4.9 Score=37.49 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=56.0
Q ss_pred ceeecchHHHHHHHHhCCccEEEEeCCCCch-----hhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEe
Q 025016 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPI-----ELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLT 198 (259)
Q Consensus 127 ~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~-----elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAit 198 (259)
....+|.++|.++++.|-+..++|..|..-. ..+.+|...++.+|--+.++.+..+-|.-+ ...-.++||.
T Consensus 284 g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~qL-~~lGGIAAiL 359 (364)
T 3obw_A 284 ELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVPKESPIYFEL-KNLTGILAIL 359 (364)
T ss_dssp SSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEECTTSTTHHHH-HHTTTEEEEE
T ss_pred CcEEECHHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEEECCCCCCchhh-hcCCcEEEEE
Confidence 4489999999999999999999999887431 356778999999999999999998888655 2222344544
No 39
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=81.76 E-value=5.2 Score=35.73 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=50.3
Q ss_pred ceeecchHHHHHHHHhC-CccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCc-eEEEEEeecC
Q 025016 127 IVVKYGLNHVTYLIEQN-KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKT-ASVLCLTTVK 201 (259)
Q Consensus 127 ~~l~~G~n~Vtk~Iekk-KAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~-~a~VAitd~g 201 (259)
.+++.|.+.|..+++.+ ...-|+++.+.... ..+..+|...+||+..+ +.+.|-++.+..+ -.++|+.+..
T Consensus 34 ~flveG~~~V~eaL~~~~~i~~l~~~~~~~~~---~~l~~~~~~~~~~v~~v-~~~~l~~ls~~~~~qGv~a~~~~~ 106 (277)
T 3nk6_A 34 TTLIEDTEPLMECIRAGVQFIEVYGSSGTPLD---PALLDLCRQREIPVRLI-DVSIVNQLFKAERKAKVFGIARVP 106 (277)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTSCCC---HHHHHHHHHTTCCEEEE-CHHHHTTCC-----CCEEEEEECC
T ss_pred CEEEEeHHHHHHHHhCCCCeEEEEEeCCccCc---HHHHHHHHhcCCcEEEE-CHHHHHHhhCCCCCCeEEEEEecC
Confidence 47999999999999988 57778888877543 33567788899999877 5667777777554 3466666543
No 40
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=81.20 E-value=2.6 Score=39.25 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=59.1
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchh----hHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCc
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIE----LVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKN 202 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~e----lv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~ 202 (259)
..+|.++|.++++.|-+.-++|..|..-.+ .+.+|...++.+|--+.++.+..+-|.-+ ...-.++||.-..-
T Consensus 266 a~YG~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~qL-~~lGGIaAiLRy~~ 342 (352)
T 3oby_A 266 VAYGLDEVREAHNYRAIEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIMSTEFEPGKRL-MSLGGIAALLRFNV 342 (352)
T ss_dssp EEESHHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEECTTSHHHHHH-HHTTSEEEEESSCC
T ss_pred EEECHHHHHHHHHcCCceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEEcCCCcchhHH-hcCCCEEEEEecCC
Confidence 889999999999999999999998864322 56778999999999999999998877655 33336677776553
No 41
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=80.71 E-value=1.8 Score=35.21 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=36.8
Q ss_pred cchHHHHHHHHhCCccEEEEeCC--C-Cc-hhhHhhHHHHhhhcCCCEEE
Q 025016 131 YGLNHVTYLIEQNKAQLVVIAHD--V-DP-IELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~D--v-sP-~elv~~LpaLC~~~~VPy~~ 176 (259)
-|..++..+|.+|++.|||--.| - .| ..=...|...|-.++|||+.
T Consensus 61 eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T 110 (134)
T 2xw6_A 61 GGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLAT 110 (134)
T ss_dssp THHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEEC
T ss_pred CCcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEc
Confidence 47789999999999999999988 2 22 11234489999999999975
No 42
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=80.44 E-value=2.3 Score=36.41 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=38.0
Q ss_pred chHHHHHHHHhCCccEEEEeCC---CCc-hhhHhhHHHHhhhcCCCEEEEC
Q 025016 132 GLNHVTYLIEQNKAQLVVIAHD---VDP-IELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~D---vsP-~elv~~LpaLC~~~~VPy~~v~ 178 (259)
|..++..+|.+|++.|||-..| ..| ..=...|..+|-.++|||+.--
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~Tnl 136 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAITR 136 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEESSH
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEeCH
Confidence 7779999999999999999988 344 2223558999999999998644
No 43
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=76.23 E-value=6.8 Score=34.37 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=51.4
Q ss_pred eeecchHHHHHHHHhC--CccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCc-eEEEEEeec
Q 025016 128 VVKYGLNHVTYLIEQN--KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKT-ASVLCLTTV 200 (259)
Q Consensus 128 ~l~~G~n~Vtk~Iekk--KAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~-~a~VAitd~ 200 (259)
.++.|.+.|..+++.+ ...-|+++.+..... ...+..+|+..+||+..+. ...|-++.+..+ -.++|+...
T Consensus 13 ~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~-~~~l~~~~~~~~i~v~~v~-~~~l~~ls~~~~~qGv~a~~~~ 86 (253)
T 1gz0_A 13 EMIYGIHAVQALLERAPERFQEVFILKGREDKR-LLPLIHALESQGVVIQLAN-RQYLDEKSDGAVHQGIIARVKP 86 (253)
T ss_dssp EEEESHHHHHHHHHSCGGGEEEEEEESSCCCTT-THHHHHHHHHHTCEEEEEC-SHHHHHTTTSCCCTTEEEEECC
T ss_pred EEEEEHHHHHHHHhcCCCCeEEEEEECCccchh-HHHHHHHHHHCCCcEEEeC-HHHHHHHhCCCCCcEEEEEEec
Confidence 6889999999999987 477788888764322 2335667888999987765 567877777654 345666654
No 44
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=75.31 E-value=12 Score=30.31 Aligned_cols=87 Identities=9% Similarity=0.076 Sum_probs=56.8
Q ss_pred HHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCC-C-CccCCCceeecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHH
Q 025016 87 SSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGK-T-VEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLP 164 (259)
Q Consensus 87 ~~l~kl~~kyrPe~k~eK~~rLl~lA~kkaaGk-~-~~~kkp~~l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~Lp 164 (259)
..|..=++. -|+++-+-..++||-=+.+--.. . .....+. -..++.+++++...-.|+|-.+++.. ....+.
T Consensus 9 ~~l~~g~~G-~p~lkPDEqr~yLGtfrERV~lalt~~q~~~~~----~~~~~~~~l~~~~~~~l~ing~l~~~-~~~~Yi 82 (133)
T 2ohw_A 9 LYLQQGMYG-PLETKPDERHLFLGSLRERVVLALTKGQVLRSK----PYKEAEHELKNSHNVTLLINGELQYQ-SYSSYI 82 (133)
T ss_dssp HHHHTTCCS-CCSSHHHHHHHTTTCCGGGEEEEEEHHHHTSSS----CCHHHHHHHHTCSSEEEEEETTSCHH-HHHHHH
T ss_pred HHHHHhcCC-CCCCCHHHHHHhccchhhhhheeeeHHHHhchh----HHHHHHHHHhhCCCcEEEEcCCCCHH-HHHHHH
Confidence 344444554 67777766666666211100000 0 0001111 14567889999999999999999885 667799
Q ss_pred HHhhhcCCCEEEECC
Q 025016 165 ALCRKMEIPYCIVKG 179 (259)
Q Consensus 165 aLC~~~~VPy~~v~s 179 (259)
.+|.++||||.+|.+
T Consensus 83 klA~~~~i~fTiV~~ 97 (133)
T 2ohw_A 83 QMASRYGVPFKIVSD 97 (133)
T ss_dssp HHHHHTTCCEEEECC
T ss_pred HHHHHcCCCeEEecC
Confidence 999999999999987
No 45
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=72.92 E-value=8.6 Score=35.50 Aligned_cols=73 Identities=19% Similarity=0.141 Sum_probs=56.7
Q ss_pred eeecchHHHHHHHHhCCccEEEEeCCCCc------hhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecC
Q 025016 128 VVKYGLNHVTYLIEQNKAQLVVIAHDVDP------IELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVK 201 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkKAkLVVIA~DvsP------~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g 201 (259)
....|..+|.++++.|.+..++|..|..- ...+..|...++.+|-.+.++.+..+-|.-+ +..-.+.||.-..
T Consensus 272 ~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~qL-~~~gGIaAiLRy~ 350 (358)
T 3agj_B 272 TVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGERL-VSFGGVIALLRYP 350 (358)
T ss_dssp GEEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHHH-GGGTTEEEEESSC
T ss_pred cEEECHHHHHHHHHhCCceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchhhh-hcCCcEEEEEecc
Confidence 38899999999999999999999987521 1235678889999999999999999888555 3333566666543
No 46
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=71.74 E-value=9.1 Score=34.04 Aligned_cols=69 Identities=10% Similarity=0.095 Sum_probs=44.1
Q ss_pred eeecchHHHHHHHHhC-CccEEEEeCCCCchhhHhhHHHHhhhcC-CCEEEECCccchhhhhcCCc-eEEEEEe
Q 025016 128 VVKYGLNHVTYLIEQN-KAQLVVIAHDVDPIELVVWLPALCRKME-IPYCIVKGKSRLGSIVHKKT-ASVLCLT 198 (259)
Q Consensus 128 ~l~~G~n~Vtk~Iekk-KAkLVVIA~DvsP~elv~~LpaLC~~~~-VPy~~v~sK~eLG~avGkk~-~a~VAit 198 (259)
+++.|.+.|..+++.+ ...-|+++.+..... ...+..+|...+ +|+..+. .+.|-++.+..+ -.++|+.
T Consensus 29 f~veG~~~v~eal~~~~~i~~l~~~~~~~~~~-~~~l~~~~~~~~~~~v~~v~-~~~l~~ls~~~~~qGv~a~~ 100 (274)
T 1ipa_A 29 FLIEGAREIERALQAGIELEQALVWEGGLNPE-EQQVYAALGRVGRLALLEVS-EAVLKKLSVRDNPAGLIALA 100 (274)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEETTCCCHH-HHHHHHCC-----CEEEEEC-HHHHHHHCCSSSCCSEEEEE
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEEcCcccch-HHHHHHHHHhcCCccEEEeC-HHHHHHHhCCCCCCeEEEEE
Confidence 6899999999999987 577888888765422 233455677778 9886654 566777766543 2344444
No 47
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=69.94 E-value=5.5 Score=30.42 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=42.8
Q ss_pred ecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccch
Q 025016 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRL 183 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eL 183 (259)
+.|.+.....++...+..|+||-.-...+....+-..|..+++.+.++.+-.++
T Consensus 51 V~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~~~ 104 (141)
T 3nkl_A 51 IYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDDL 104 (141)
T ss_dssp EECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHHHH
T ss_pred EECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHHHH
Confidence 346788889999999999999976544445566788999999999999886654
No 48
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=67.67 E-value=24 Score=32.83 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=56.3
Q ss_pred ceeecchHHHHHHHHhCCccEEEEeCCCC----ch--hhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeec
Q 025016 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVD----PI--ELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTV 200 (259)
Q Consensus 127 ~~l~~G~n~Vtk~IekkKAkLVVIA~Dvs----P~--elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~ 200 (259)
....+|..+|.++++.|-+..++|..|.- |. ..+..|...++.+|--+.++.+..+-|.-+ ...-.++||.-.
T Consensus 296 ~~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~qL-~~lgGIAAiLRy 374 (386)
T 2vgn_A 296 DKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEEL-DQLTGIACILKY 374 (386)
T ss_dssp SSEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHHH-HHTTTEEEEESS
T ss_pred CcEEeCHHHHHHHHHcCCcEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhhH-hccCcEEEEEec
Confidence 34899999999999999999999999862 21 125678888999999999999998888655 232345666543
No 49
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=67.08 E-value=5.6 Score=31.94 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCccEEEEeCCCC--chhhHhhHHHHhhhcCCCEEE
Q 025016 134 NHVTYLIEQNKAQLVVIAHDVD--PIELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~Dvs--P~elv~~LpaLC~~~~VPy~~ 176 (259)
.++...|++|++.|||-..|-. +..=...+...|-.++|||+.
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 5799999999999999988752 222234588999999999975
No 50
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=60.05 E-value=25 Score=32.85 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=53.2
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCc----h---hhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEee
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDP----I---ELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTT 199 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP----~---elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd 199 (259)
..+|..+|.++++.|-+.-++|..|.-. . .+ ..|...++.+|--+.++.+..+-|.-+ ...-.++||.-
T Consensus 292 a~YG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~r~~~-~~L~e~~~~~Gg~V~ivs~~~~~G~qL-~~lgGiaAiLR 367 (390)
T 3mca_B 292 AWYGPNHVLKAFELGAIGELLISDSLFRSSDIATRKKW-VSLVEGVKEINCPVYIFSSLHESGKQL-DLLSGIAAILT 367 (390)
T ss_dssp EEESHHHHHHHHHTTCBSSCEEEETTCCCSCHHHHHHH-HHHHHHHHHTTCCEEEECTTSHHHHHH-HHTTSEEEEBS
T ss_pred EEECHHHHHHHHHcCCCeEEEEecccccCCChhHHHHH-HHHHHHHHhcCCEEEEECCCCCchhhh-hcCCcEEEEEe
Confidence 8899999999999999999999987631 1 23 257788999999999999988777655 22234566653
No 51
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=57.18 E-value=53 Score=25.65 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=40.2
Q ss_pred HHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHHHH
Q 025016 138 YLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKI 211 (259)
Q Consensus 138 k~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kL 211 (259)
.....|..+.|+=+.|- .++.. |...++..|||++.+.+.-.- =+--.+.+|+|| |+.+++..+++
T Consensus 48 ~W~~~g~~KiVlk~~~e--~el~~-l~~~a~~~gl~~~~i~DAG~T--ei~~gs~Tvlai---gP~~~~~vd~i 113 (120)
T 1xty_A 48 EWLHQGQPKIIVKVNSL--DEIIS-RAKKAETMNLPFSIIEDAGKT--QLEPGTITCLGI---GPAPENLVDSI 113 (120)
T ss_dssp HHHHTTCCEEEEEESSH--HHHHH-HHHHHHHTTCCEEEEECCSSS--SSCTTCEEEEEE---EEEEHHHHHHH
T ss_pred HHHHCCCcEEEEecCCH--HHHHH-HHHHHHHCCCCEEEEEcCCcc--ccCCCCeEEEEe---ccCCHHHHHHH
Confidence 34456778888888773 34533 777888999999888654210 011135788887 34444444444
No 52
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=56.45 E-value=18 Score=34.03 Aligned_cols=78 Identities=10% Similarity=0.147 Sum_probs=45.1
Q ss_pred CccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhc----CCceEEEEEeecCcccHHHHHHHHHHHHHhh
Q 025016 144 KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVH----KKTASVLCLTTVKNEDKMEFSKILEAIKANF 219 (259)
Q Consensus 144 KAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avG----kk~~a~VAitd~g~eDk~~l~kLve~i~~~y 219 (259)
.+.|||+|.|.+. +-..+-..|+..|||+..+.+ .+|+..+- ..-...|||+..|. ....-..|-+.+.+.+
T Consensus 72 ~~~lVi~at~~~~--~n~~i~~~a~~~~i~vn~~d~-~e~~~~~~pa~~~~~~l~iaIsT~Gk-sp~la~~ir~~ie~~l 147 (457)
T 1pjq_A 72 SCWLAIAATDDDT--VNQRVSDAAESRRIFCNVVDA-PKAASFIMPSIIDRSPLMVAVSSGGT-SPVLARLLREKLESLL 147 (457)
T ss_dssp TCSEEEECCSCHH--HHHHHHHHHHHTTCEEEETTC-TTSSSEECCEEEEETTEEEEEECTTS-CHHHHHHHHHHHHHHS
T ss_pred CccEEEEcCCCHH--HHHHHHHHHHHcCCEEEECCC-cccCceEeeeEEEeCCeEEEEECCCC-ChHHHHHHHHHHHHhc
Confidence 4779999988753 234467889999999755544 45553321 11234788885543 3322334445555555
Q ss_pred hhhhHh
Q 025016 220 NDKYEE 225 (259)
Q Consensus 220 ~d~y~e 225 (259)
.+.|++
T Consensus 148 ~~~~~~ 153 (457)
T 1pjq_A 148 PQHLGQ 153 (457)
T ss_dssp CTTHHH
T ss_pred chhHHH
Confidence 444443
No 53
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=55.95 E-value=18 Score=31.34 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=44.7
Q ss_pred CccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhh-----hhcCCceEEEEEeecCcccHHHHHHHHHHHHHh
Q 025016 144 KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGS-----IVHKKTASVLCLTTVKNEDKMEFSKILEAIKAN 218 (259)
Q Consensus 144 KAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~-----avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~ 218 (259)
.+.|||.|.|.+. +-..+-.+|+ .+||+..+.+. +++. .+-+. ...|||+..|.. ......|-+.+.+.
T Consensus 91 ~adLVIaAT~d~~--~N~~I~~~ak-~gi~VNvvD~p-~~~~f~~Paiv~rg-~l~iaIST~G~s-P~la~~iR~~ie~~ 164 (223)
T 3dfz_A 91 NVFFIVVATNDQA--VNKFVKQHIK-NDQLVNMASSF-SDGNIQIPAQFSRG-RLSLAISTDGAS-PLLTKRIKEDLSSN 164 (223)
T ss_dssp SCSEEEECCCCTH--HHHHHHHHSC-TTCEEEC------CCSEECCEEEEET-TEEEEEECTTSC-HHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCHH--HHHHHHHHHh-CCCEEEEeCCc-ccCeEEEeeEEEeC-CEEEEEECCCCC-cHHHHHHHHHHHHH
Confidence 3789999988654 4455677898 99998766553 3442 22232 357888877643 33334444666666
Q ss_pred hhhhhHhh
Q 025016 219 FNDKYEEL 226 (259)
Q Consensus 219 y~d~y~e~ 226 (259)
|-+.|+++
T Consensus 165 lp~~~~~~ 172 (223)
T 3dfz_A 165 YDESYTQY 172 (223)
T ss_dssp SCTHHHHH
T ss_pred ccHHHHHH
Confidence 66555544
No 54
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=54.95 E-value=42 Score=26.03 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=39.7
Q ss_pred HHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHHHH
Q 025016 135 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKI 211 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kL 211 (259)
.+......|..+.|+=+.| ..++.. |...++..|+|++.+.+...- =+--.+.+|+|| |+...+..+++
T Consensus 40 ~~~~W~~~g~~kivlk~~~--e~~l~~-l~~~a~~~gl~~~~i~DAG~T--ei~~gt~Tvlai---gP~~~~~vd~i 108 (115)
T 2zv3_A 40 AVDEWLREGQKKVVVKVNS--EKELID-IYNKARSEGLPCSIIRDAGHT--QLEPGTLTAVAI---GPEKDEKIDKI 108 (115)
T ss_dssp HHHHHHHTTCCEEEEEESS--HHHHHH-HHHHHHHHTCCEEEEEECC---------EEEEEEE---EEECHHHHHHH
T ss_pred HHHHHHHCCCeEEEEecCC--HHHHHH-HHHHHHHcCCCEEEEEeCCce--ecCCCCEEEEEe---CcCCHHHHHHH
Confidence 3444456777888887876 334533 677788999999877543110 011134678887 34444444444
No 55
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=54.19 E-value=65 Score=25.23 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=41.3
Q ss_pred HHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHHHH
Q 025016 136 VTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKI 211 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kL 211 (259)
+......|..+.|+=+.|- .++.. |...++..|+|++.+.+.-.- =+--.+.+|+|| |+...+..+++
T Consensus 47 ~~~W~~~g~~Kvvlk~~~e--~el~~-l~~~a~~~gl~~~~i~DAG~T--ei~~gt~Tvlai---gP~~~~~vd~i 114 (121)
T 1wn2_A 47 FEAWFREGQKKVVVKVESE--EELFK-LKAEAEKLGLPNALIRDAGLT--EIPPGTVTVLAV---GPAPEEIVDKV 114 (121)
T ss_dssp HHHHHHTTCCEEEEEESSH--HHHHH-HHHHHHHTTCCEEEEECTTCT--TSCTTCEEEEEE---EEEEHHHHHHH
T ss_pred HHHHHHCCCcEEEEecCCH--HHHHH-HHHHHHHCCCCEEEEEcCCcc--ccCCCCEEEEEe---ccCCHHHHHHh
Confidence 3444566778888878773 34533 677888999999888654110 011235788887 34444444444
No 56
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=51.97 E-value=64 Score=23.28 Aligned_cols=87 Identities=9% Similarity=-0.002 Sum_probs=47.8
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhh---hcCCCEEEECCccchhhhhcCCceEEEEEeecCcccH
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCR---KMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDK 205 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~---~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk 205 (259)
......+....++.....+||+-.+....+-...+..+.+ ..++|++.+.+.........--...+..+... +-+.
T Consensus 36 ~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~k-p~~~ 114 (142)
T 3cg4_A 36 SADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITK-PFDN 114 (142)
T ss_dssp EESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEES-SCCH
T ss_pred EeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeC-CCCH
Confidence 4455678888899999999999877644333343444444 35689888765543221111111234444444 2344
Q ss_pred HHHHHHHHHHH
Q 025016 206 MEFSKILEAIK 216 (259)
Q Consensus 206 ~~l~kLve~i~ 216 (259)
..|...++.+-
T Consensus 115 ~~l~~~i~~~~ 125 (142)
T 3cg4_A 115 EDLIEKTTFFM 125 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44544444443
No 57
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=51.42 E-value=49 Score=23.82 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=36.6
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhh---hcCCCEEEECCccch
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCR---KMEIPYCIVKGKSRL 183 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~---~~~VPy~~v~sK~eL 183 (259)
......+....++.....+||+-.+....+-...+..+.+ ..++|++.+.+....
T Consensus 39 ~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 96 (143)
T 3cnb_A 39 IAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTD 96 (143)
T ss_dssp EECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCH
T ss_pred EECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCH
Confidence 3455677888888889999999877644333333444444 467899887665543
No 58
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=51.28 E-value=34 Score=25.06 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=36.5
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhh---hcCCCEEEECCccch
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCR---KMEIPYCIVKGKSRL 183 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~---~~~VPy~~v~sK~eL 183 (259)
......+....++.....+||+-.+....+-...+..+-+ ..++|++.+.+....
T Consensus 36 ~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~ 93 (144)
T 3kht_A 36 FVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSD 93 (144)
T ss_dssp EESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCH
T ss_pred EECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCH
Confidence 3445677888888899999999776644333343444443 467999988765443
No 59
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=49.79 E-value=41 Score=29.96 Aligned_cols=72 Identities=8% Similarity=0.015 Sum_probs=42.4
Q ss_pred CccEEEEeCCCCchhhHhhHHHHhhhc---CCCEEEECCccchhh-----hhcCCceEEEEEeecCcccHHHHHHHHHHH
Q 025016 144 KAQLVVIAHDVDPIELVVWLPALCRKM---EIPYCIVKGKSRLGS-----IVHKKTASVLCLTTVKNEDKMEFSKILEAI 215 (259)
Q Consensus 144 KAkLVVIA~DvsP~elv~~LpaLC~~~---~VPy~~v~sK~eLG~-----avGkk~~a~VAitd~g~eDk~~l~kLve~i 215 (259)
.+.+||.|.|.+ ++-..+-.+|+.. +||+..+.+ .+|+. .+.+.....|||+..|. .......|-+.|
T Consensus 106 ~adlViaat~d~--~~n~~I~~~Ar~~f~~~i~VNvvd~-pel~~f~~Pa~~~~g~~l~IaIST~Gk-sp~lA~~ir~~i 181 (274)
T 1kyq_A 106 AWYIIMTCIPDH--PESARIYHLCKERFGKQQLVNVADK-PDLCDFYFGANLEIGDRLQILISTNGL-SPRFGALVRDEI 181 (274)
T ss_dssp CEEEEEECCSCH--HHHHHHHHHHHHHHCTTSEEEETTC-GGGBSEECCEEEEETTTEEEEEEESSS-CHHHHHHHHHHH
T ss_pred CeEEEEEcCCCh--HHHHHHHHHHHHhcCCCcEEEECCC-cccCeeEeeeEEEeCCCEEEEEECCCC-CcHHHHHHHHHH
Confidence 588999999853 2345578899999 898876654 34443 23222214788886653 332223333444
Q ss_pred HHhh
Q 025016 216 KANF 219 (259)
Q Consensus 216 ~~~y 219 (259)
.+.|
T Consensus 182 e~~l 185 (274)
T 1kyq_A 182 RNLF 185 (274)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 60
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=49.57 E-value=80 Score=24.48 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=41.2
Q ss_pred HHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCc--cchhhhhcCCceEEEEEeecCcccHHHHHHH
Q 025016 135 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK--SRLGSIVHKKTASVLCLTTVKNEDKMEFSKI 211 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK--~eLG~avGkk~~a~VAitd~g~eDk~~l~kL 211 (259)
........|..+.|+=+.|- .++.. |...++..|+|++.+.+. .++ --.+.+|+|| |+.+.+..+++
T Consensus 42 ~~~~W~~~g~~kiVlk~~~e--~~l~~-l~~~a~~~gl~~~~v~DAG~Tei----~~gt~Tvlai---gP~~~~~vd~i 110 (117)
T 1rlk_A 42 VFNEWYDEGQRKIVVKVNDL--DEIME-IKRMADSMGIVNEIVQDRGYTQV----EPGTITCIGL---GPDEEEKLDKI 110 (117)
T ss_dssp HHHHHHHTTCCEEEEEESSH--HHHHH-HHHHHHHHTCCEEEEECCCSSSS----SCCCEEEEEE---EEEEHHHHHHH
T ss_pred HHHHHHHCCCeEEEEecCCH--HHHHH-HHHHHHHCCCCEEEEEeCCccCc----CCCCEEEEEe---CcCCHHHHHHH
Confidence 34445567778888878773 34533 677788899999888654 111 1134688887 34444444444
No 61
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=49.37 E-value=70 Score=22.94 Aligned_cols=53 Identities=6% Similarity=0.023 Sum_probs=35.2
Q ss_pred ecchHHHHHHHHhCCccEEEEeCCCC-chhhHhhHHHHhhhcCCCEEEECCccc
Q 025016 130 KYGLNHVTYLIEQNKAQLVVIAHDVD-PIELVVWLPALCRKMEIPYCIVKGKSR 182 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~Dvs-P~elv~~LpaLC~~~~VPy~~v~sK~e 182 (259)
.....+....++.....+||+-.+.. ..+-...+..+.+..++|++++.+...
T Consensus 40 ~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 40 FDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQD 93 (140)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCC
T ss_pred ECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCC
Confidence 45567788888888899999987663 223233344444446899998766554
No 62
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=45.78 E-value=87 Score=24.28 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhh-hhcCCceEEEEEeecCcccHHHHHHH
Q 025016 135 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGS-IVHKKTASVLCLTTVKNEDKMEFSKI 211 (259)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~-avGkk~~a~VAitd~g~eDk~~l~kL 211 (259)
.....-..|..++|+-+.|- .++.. |...++..|||+..+-+. |+ -+--.+.+|+|| |+...+..+++
T Consensus 42 ~~~~W~~~g~~KVvlk~~~e--~~l~~-l~~~a~~~gl~~~~i~DA---G~Tqi~~gt~Tvlai---gP~~~~~vd~i 110 (117)
T 1q7s_A 42 MLKQWEYCGQPKVVVKAPDE--ETLIA-LLAHAKMLGLTVSLIQDA---GRTQIAPGSQTVLGI---GPGPADLIDKV 110 (117)
T ss_dssp HHHHHHHTTCCEEEEEESSH--HHHHH-HHHHHHHTTCCEEEEEEC---SSSSEEEEEEEEEEE---EEEEHHHHHHH
T ss_pred HHHHHHhCCCeeEEEEcCCH--HHHHH-HHHHHHHCCCCEEEEEEC---CCcccCCCCeEEEEe---ccCCHHHHHHh
Confidence 34445556777878878773 34533 777888999998776653 21 001123678887 34444444444
No 63
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=45.50 E-value=64 Score=23.55 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=34.2
Q ss_pred cchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccc
Q 025016 131 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSR 182 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~e 182 (259)
....+....++.....+||+--+....+-...+..+.+...+|++++.+...
T Consensus 35 ~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~ 86 (136)
T 2qzj_A 35 YNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINE 86 (136)
T ss_dssp SSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCC
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCC
Confidence 4456677888888899999876654333334455555545899988765543
No 64
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=45.04 E-value=31 Score=29.41 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=33.4
Q ss_pred hHHHHHHHHh--CCccEEEEeCCCCc----h---hhHhhHHHHhhhcCCCEEEECCccch
Q 025016 133 LNHVTYLIEQ--NKAQLVVIAHDVDP----I---ELVVWLPALCRKMEIPYCIVKGKSRL 183 (259)
Q Consensus 133 ~n~Vtk~Iek--kKAkLVVIA~DvsP----~---elv~~LpaLC~~~~VPy~~v~sK~eL 183 (259)
+..+...+.. .++.+||++.|+-. . .+...+..+.+..++|++.+.+.-+.
T Consensus 53 l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD~ 112 (330)
T 3ib7_A 53 LGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDD 112 (330)
T ss_dssp HHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCTTSC
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCCCCCC
Confidence 4445555665 67899999999743 1 22333444445669999988877663
No 65
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=42.54 E-value=94 Score=22.44 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=32.3
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhh---cCCCEEEECCccchh
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRK---MEIPYCIVKGKSRLG 184 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~---~~VPy~~v~sK~eLG 184 (259)
......+....++.....+||+-.+....+-...+..+-+. .++|++++.+.....
T Consensus 31 ~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 89 (140)
T 3n53_A 31 ESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKE 89 (140)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----
T ss_pred EeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHH
Confidence 33456777888888899999998766433333333333333 579999877655433
No 66
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=42.38 E-value=41 Score=26.73 Aligned_cols=46 Identities=15% Similarity=0.305 Sum_probs=28.0
Q ss_pred HHHHHHhCCccEEEEeCCCCch-----hhHhhHHHHhhhcCCCEEEECCccc
Q 025016 136 VTYLIEQNKAQLVVIAHDVDPI-----ELVVWLPALCRKMEIPYCIVKGKSR 182 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~DvsP~-----elv~~LpaLC~~~~VPy~~v~sK~e 182 (259)
+...++..++.+||++.|+... +...++..| ...++|+++|.+.-+
T Consensus 24 ~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l-~~~~~pv~~v~GNHD 74 (228)
T 1uf3_A 24 FVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRIL-SEAHLPTAYVPGPQD 74 (228)
T ss_dssp HHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHH-GGGCSCEEEECCTTS
T ss_pred HHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHH-HhcCCcEEEECCCCC
Confidence 3344455578899999997432 222333344 345789888876544
No 67
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=41.35 E-value=42 Score=31.69 Aligned_cols=100 Identities=15% Similarity=0.216 Sum_probs=59.3
Q ss_pred ceeecchHHHHHHHHh----CCccEEEEeC---CCCch--hhHhhHHHHhhhcCCCEEEECCccchhhh-hc-CCceEEE
Q 025016 127 IVVKYGLNHVTYLIEQ----NKAQLVVIAH---DVDPI--ELVVWLPALCRKMEIPYCIVKGKSRLGSI-VH-KKTASVL 195 (259)
Q Consensus 127 ~~l~~G~n~Vtk~Iek----kKAkLVVIA~---DvsP~--elv~~LpaLC~~~~VPy~~v~sK~eLG~a-vG-kk~~a~V 195 (259)
..+++|++.|..++.= ..|.|||..+ |..-. ....-+-.+|++++||++.+-+....+.- +. ....++.
T Consensus 266 a~l~~Gi~~v~~~~~l~~~l~~ADLVITGEG~~D~Qtl~GK~p~gVa~~A~~~~vPviaiaG~~~~~~~~~~~~Gi~a~f 345 (383)
T 3cwc_A 266 AQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVF 345 (383)
T ss_dssp CEEECHHHHHHHHTTHHHHHHHCSEEEECCEESCC----CHHHHHHHHHHHHTTCCEEEEEEECC--------CCCSEEE
T ss_pred CEEccHHHHHHHHhChHhhhcCCCEEEECCCCCcCcCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCChHHHHhcCCcEEE
Confidence 3588999999986622 3489999988 65432 12233567899999999987776654422 11 1234566
Q ss_pred EEeecCcccHHHHHHHHHHHHHhhhhhhHhhhhhc
Q 025016 196 CLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKW 230 (259)
Q Consensus 196 Aitd~g~eDk~~l~kLve~i~~~y~d~y~e~~~~w 230 (259)
.|++... .|++.++....|..+.-+.+.|.|
T Consensus 346 ~i~~~~~----~l~~al~~a~~~L~~~a~~i~r~~ 376 (383)
T 3cwc_A 346 SVIYTIC----TLEDALKNASENVRMTARNVAATL 376 (383)
T ss_dssp EEECCCT----TSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCC----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665432 233444445555556666677777
No 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=40.39 E-value=50 Score=25.68 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=24.2
Q ss_pred CccEEEEeCCCCch----hhHhhHHHHhhh-----cCCCEEEECCccchhh
Q 025016 144 KAQLVVIAHDVDPI----ELVVWLPALCRK-----MEIPYCIVKGKSRLGS 185 (259)
Q Consensus 144 KAkLVVIA~DvsP~----elv~~LpaLC~~-----~~VPy~~v~sK~eLG~ 185 (259)
.+..+|+.-|++.. ++..++..+... .++|++++.+|.+|-.
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 36677777777542 233444444432 5799999999888753
No 69
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=38.63 E-value=92 Score=22.63 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=36.7
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhh---hcCCCEEEECCccc
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCR---KMEIPYCIVKGKSR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~---~~~VPy~~v~sK~e 182 (259)
......+....++.....+||+-.+....+-...+..+.+ ..++|++.+.+...
T Consensus 37 ~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 37 QCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCC
T ss_pred EeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCC
Confidence 3455677788888888999999877654443344455554 46799988776554
No 70
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=38.09 E-value=74 Score=28.26 Aligned_cols=68 Identities=12% Similarity=0.225 Sum_probs=43.4
Q ss_pred eeecchHHHHHHHHhCC-ccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCC-c-eEEEEEee
Q 025016 128 VVKYGLNHVTYLIEQNK-AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKK-T-ASVLCLTT 199 (259)
Q Consensus 128 ~l~~G~n~Vtk~IekkK-AkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk-~-~a~VAitd 199 (259)
+++.|.+.|..+++.+. ..-|+++.+..... .+..++...++|+..+ +...|-++.+.. + -.++|+..
T Consensus 41 f~veG~~~V~eal~~~~~i~~l~~~~~~~~~~---~~~~l~~~~~~~v~~v-~~~~l~~ls~~~~~~qGv~a~~~ 111 (287)
T 1x7o_A 41 FLVMGVRPISLAVEHGWPVRTLLYDGQRELSK---WARELLRTVRTEQIAM-APDLLMELGEKNEAPPEVVAVVE 111 (287)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEESSCCCCH---HHHHHHHHSCSEEEEE-CHHHHTTSSCSSSCCCSEEEEEE
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEecCcccch---hHHHHHHHcCCcEEEe-CHHHHHHHhCCCCCCCcEEEEEe
Confidence 68999999999999875 77788887764311 1233444445887655 456666666654 3 23444443
No 71
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=37.90 E-value=1.1e+02 Score=23.14 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECC-ccchhhhhcC
Q 025016 140 IEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG-KSRLGSIVHK 189 (259)
Q Consensus 140 IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~s-K~eLG~avGk 189 (259)
.....+.+|.|+.| ++.+ +...++++++++.++.+ ..++.+..|.
T Consensus 65 ~~~~~~~vv~vs~d-~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~v 110 (163)
T 3gkn_A 65 FDKAGAKILGVSRD-SVKS----HDNFCAKQGFAFPLVSDGDEALCRAFDV 110 (163)
T ss_dssp HHHTTCEEEEEESS-CHHH----HHHHHHHHCCSSCEEECTTCHHHHHTTC
T ss_pred HHHCCCEEEEEeCC-CHHH----HHHHHHHhCCCceEEECCcHHHHHHhCC
Confidence 33444677888887 4543 34566778888776553 4466666665
No 72
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=37.69 E-value=98 Score=28.61 Aligned_cols=73 Identities=10% Similarity=0.108 Sum_probs=49.7
Q ss_pred ccEEEEeCC-CCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHHhhh
Q 025016 145 AQLVVIAHD-VDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFN 220 (259)
Q Consensus 145 AkLVVIA~D-vsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~y~ 220 (259)
+.++|+-.+ -|.|+ .+|-.+|++.|.|-+.|.+-++|-..-=. ...+|+||-.-+--..-..++++.++..+.
T Consensus 226 vD~miVVGg~nSSNT--~rL~eia~~~g~~ty~Ie~~~el~~~wl~-g~~~VGITAGASTP~~lieeVi~~l~~~~~ 299 (328)
T 3szu_A 226 AEVVLVVGSKNSSNS--NRLAELAQRMGKRAFLIDDAKDIQEEWVK-EVKCVGVTAGASAPDILVQNVVARLQQLGG 299 (328)
T ss_dssp CSEEEEECCTTCHHH--HHHHHHHHHTTCEEEEESSGGGCCHHHHT-TCSEEEEEECTTCCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCchH--HHHHHHHHHhCCCEEEeCChHHCCHHHhC-CCCEEEEeecCCCCHHHHHHHHHHHHHhCC
Confidence 555555544 34554 45899999999999999999998642211 245788887766555556777777766543
No 73
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=37.10 E-value=1.4e+02 Score=22.73 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=27.9
Q ss_pred CCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECC-ccchhhhhcCC
Q 025016 143 NKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG-KSRLGSIVHKK 190 (259)
Q Consensus 143 kKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~s-K~eLG~avGkk 190 (259)
..+.+|.|..| ++.+ +...++++++++.++.+ ..++....|..
T Consensus 62 ~~v~vv~vs~d-~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 105 (161)
T 3drn_A 62 YDVVVIGVSSD-DINS----HKRFKEKYKLPFILVSDPDKKIRELYGAK 105 (161)
T ss_dssp TCEEEEEEESC-CHHH----HHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred cCCEEEEEeCC-CHHH----HHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence 34667777766 3432 45677888888876654 45677777654
No 74
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=36.28 E-value=1.2e+02 Score=21.78 Aligned_cols=54 Identities=11% Similarity=0.117 Sum_probs=34.5
Q ss_pred eecchHHHHHHHHh----------CCccEEEEeCCCCchhhHhhHHHHhhh---cCCCEEEECCccc
Q 025016 129 VKYGLNHVTYLIEQ----------NKAQLVVIAHDVDPIELVVWLPALCRK---MEIPYCIVKGKSR 182 (259)
Q Consensus 129 l~~G~n~Vtk~Iek----------kKAkLVVIA~DvsP~elv~~LpaLC~~---~~VPy~~v~sK~e 182 (259)
......+....++. ....+||+-.+....+-...+..+.+. .++|++++.+...
T Consensus 37 ~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~ 103 (149)
T 1k66_A 37 RCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSN 103 (149)
T ss_dssp EECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCC
T ss_pred EECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCC
Confidence 34455777788886 778999998776443333334444443 5799988765543
No 75
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=36.19 E-value=39 Score=27.82 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=43.9
Q ss_pred cEEEEeCCCCch-hhHhhHHHHh----hhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHHhhh
Q 025016 146 QLVVIAHDVDPI-ELVVWLPALC----RKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANFN 220 (259)
Q Consensus 146 kLVVIA~DvsP~-elv~~LpaLC----~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~y~ 220 (259)
.+|+|.-|++.. ++...+...+ .-.++|..++.+.. |..+...+ .+-..+..+...|.++++.+...|.
T Consensus 74 ~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~d--G~~v~~~t----y~p~~~~~~~~~f~~~L~~v~~~~~ 147 (173)
T 3ira_A 74 AFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPG--KKPFFAGT----YIPKNTRFNQIGMLELVPRIKEIWE 147 (173)
T ss_dssp HCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTT--SCEEEEES----SCCSSCBTTBCCHHHHHHHHHHHHH
T ss_pred cCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeECCC--CCceeeee----eCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 588888898753 3332222222 34689988776543 32222100 0111122234468999999999999
Q ss_pred hhhHhhh
Q 025016 221 DKYEELR 227 (259)
Q Consensus 221 d~y~e~~ 227 (259)
++.+++.
T Consensus 148 ~~~~~~~ 154 (173)
T 3ira_A 148 QQHEEVL 154 (173)
T ss_dssp HSHHHHH
T ss_pred HHHHHHH
Confidence 9888776
No 76
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=35.63 E-value=1.3e+02 Score=22.13 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=36.6
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhh-cCCCEEEECCccch
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRK-MEIPYCIVKGKSRL 183 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~-~~VPy~~v~sK~eL 183 (259)
......+....++.....+||+-.+....+-...+..+.+. .++|++++.+..+.
T Consensus 43 ~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 98 (153)
T 3hv2_A 43 FARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDL 98 (153)
T ss_dssp EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCH
T ss_pred EECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCH
Confidence 34556778888899999999998776543333333334333 47899888776543
No 77
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=35.62 E-value=51 Score=31.12 Aligned_cols=22 Identities=9% Similarity=0.434 Sum_probs=18.0
Q ss_pred hHHHHHHHHhCCccEEEEeCCC
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDV 154 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~Dv 154 (259)
+..++..+...++.+|||+.|+
T Consensus 41 l~~lv~~~~~~~~D~VliaGDL 62 (417)
T 4fbw_A 41 FNEILEIARERDVDMILLGGDI 62 (417)
T ss_dssp HHHHHHHHHHTTCSEEEECSCC
T ss_pred HHHHHHHHHhcCCCEEEEcCcc
Confidence 4566677777889999999998
No 78
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=34.32 E-value=91 Score=23.07 Aligned_cols=52 Identities=8% Similarity=0.128 Sum_probs=29.3
Q ss_pred CccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECC-ccchhhhhcCCceEEEEEee
Q 025016 144 KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG-KSRLGSIVHKKTASVLCLTT 199 (259)
Q Consensus 144 KAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~s-K~eLG~avGkk~~a~VAitd 199 (259)
.+.+|.|..|-++.+ +..+++++++++-.+.+ ..++....|....-++.|+|
T Consensus 59 ~v~vv~v~~d~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid 111 (151)
T 2f9s_A 59 GVEIVAVNVGESKIA----VHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTFLIN 111 (151)
T ss_dssp TEEEEEEEESCCHHH----HHHHHHHHTCCSCEEEETTSHHHHHTTCCSSCEEEEEC
T ss_pred CeEEEEEECCCCHHH----HHHHHHHcCCCceEEECCchHHHHhcCCCCCCeEEEEC
Confidence 456666666655543 34556777777655433 45677777765433333443
No 79
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=33.97 E-value=1.4e+02 Score=21.95 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=31.7
Q ss_pred ccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEEC-CccchhhhhcCCceEEEEEee
Q 025016 145 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVK-GKSRLGSIVHKKTASVLCLTT 199 (259)
Q Consensus 145 AkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~-sK~eLG~avGkk~~a~VAitd 199 (259)
+.+|.|..|.++.+ .+..+++++++++-... ...+|.+..|....-++.|+|
T Consensus 62 ~~vv~v~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~lid 114 (153)
T 2l5o_A 62 FQVLAVAQPIDPIE---SVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIG 114 (153)
T ss_dssp EEEEEEECTTSCHH---HHHHHHHHTTCCSEEEECSSCHHHHHHTCCSSSEEEEEC
T ss_pred eEEEEEecCCCCHH---HHHHHHHHcCCCceEEcCchHHHHHHcCCCccCeEEEEC
Confidence 55666666655543 25667788888876544 456788888766433333444
No 80
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=32.90 E-value=2.4e+02 Score=25.24 Aligned_cols=108 Identities=8% Similarity=0.107 Sum_probs=56.9
Q ss_pred hCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCcc-chhhhhcCCce-EEEEEeecCcccHHHHHHHHHHHHHhh
Q 025016 142 QNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKS-RLGSIVHKKTA-SVLCLTTVKNEDKMEFSKILEAIKANF 219 (259)
Q Consensus 142 kkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~-eLG~avGkk~~-a~VAitd~g~eDk~~l~kLve~i~~~y 219 (259)
++.-.|+||...-. ..++-.-|+++|+..+.+.+.. .+.. +...+ .++.+ +. ..|...+-..+..+...+
T Consensus 3 ~~~k~l~Il~~~~~----~~~i~~aa~~lG~~vv~v~~~~~~~~~--~~~~~d~~~~~-~~-~~d~~~~~~~~~~~~~~~ 74 (425)
T 3vot_A 3 KRNKNLAIICQNKH----LPFIFEEAERLGLKVTFFYNSAEDFPG--NLPAVERCVPL-PL-FEDEEAAMDVVRQTFVEF 74 (425)
T ss_dssp CCCCEEEEECCCTT----CCHHHHHHHHTTCEEEEEEETTSCCCC--SCTTEEEEEEE-CT-TTCHHHHHHHHHHHHHHS
T ss_pred CCCcEEEEECCChh----HHHHHHHHHHCCCEEEEEECCCccccc--CHhhccEEEec-CC-CCCHHHHHHHHHHhhhhc
Confidence 34456777776532 2456678999999988775433 2221 11222 22322 22 234444433333332211
Q ss_pred ------------hhhhHhhhhhcCCCCCCchhHHHHHHHHHHHHHHHHhhcC
Q 025016 220 ------------NDKYEELRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRLT 259 (259)
Q Consensus 220 ------------~d~y~e~~~~wgg~~lg~ks~~~~~k~~k~~~~e~~~k~~ 259 (259)
......++.+.| +.|+...+-..-..|...++++.+.|
T Consensus 75 ~id~V~~~~e~~~~~~a~l~e~lg--lpg~~~~~~~~~~dK~~~k~~l~~~g 124 (425)
T 3vot_A 75 PFDGVMTLFEPALPFTAKAAEALN--LPGLPFTTMENCRNKNKTRSILQQNG 124 (425)
T ss_dssp CCSEEECCCGGGHHHHHHHHHHTT--CSSCCHHHHHHHHCHHHHHHHHHHTT
T ss_pred CCCEEEECCchhHHHHHHHHHHcC--CCCCCHHHHHHhhCHHHHHHHHHHCC
Confidence 122234556664 55776655555667888888877654
No 81
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=32.34 E-value=1.3e+02 Score=21.35 Aligned_cols=54 Identities=11% Similarity=0.289 Sum_probs=35.0
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCC-----chhhHhhHHHHhhh-cCCCEEEECCccc
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVD-----PIELVVWLPALCRK-MEIPYCIVKGKSR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~Dvs-----P~elv~~LpaLC~~-~~VPy~~v~sK~e 182 (259)
......+....++.....+||+-.+.. ..+-...+..+.+. .++|++++.+...
T Consensus 32 ~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 91 (140)
T 2qr3_A 32 TLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYAD 91 (140)
T ss_dssp EECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGG
T ss_pred EeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCC
Confidence 345567888889999999999987654 32323334444433 4799988766544
No 82
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=32.27 E-value=1.7e+02 Score=26.63 Aligned_cols=70 Identities=6% Similarity=0.049 Sum_probs=46.3
Q ss_pred CccEEEEeCC-CCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHH
Q 025016 144 KAQLVVIAHD-VDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIK 216 (259)
Q Consensus 144 KAkLVVIA~D-vsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~ 216 (259)
++.++|+-.+ -|.|+ .+|-.+|++.+.|-+.|.+-++|-..-=. ....|+||-.-+--..-.+++++.++
T Consensus 209 ~~D~miVVGg~nSSNT--~rL~eia~~~~~~ty~Ie~~~el~~~wl~-~~~~VGITAGASTP~~li~eVi~~l~ 279 (297)
T 3dnf_A 209 EVDVMIIIGGKNSGNT--RRLYYISKELNPNTYHIETAEELQPEWFR-GVKRVGISAGASTPDWIIEQVKSRIQ 279 (297)
T ss_dssp GSSEEEEESCTTCHHH--HHHHHHHHHHCSSEEEESSGGGCCGGGGT-TCSEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hCCEEEEECCCCCchh--HHHHHHHHhcCCCEEEeCChHHCCHHHhC-CCCEEEEeecCCCCHHHHHHHHHHHH
Confidence 4666666555 34554 45899999999999999999998643221 24578888776654444455555443
No 83
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=31.48 E-value=2.1e+02 Score=26.64 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=60.4
Q ss_pred HcCCC----CccCCCceeecc---hHHHHHHHHh-CCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhh--
Q 025016 116 AEGKT----VEAKKPIVVKYG---LNHVTYLIEQ-NKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGS-- 185 (259)
Q Consensus 116 aaGk~----~~~kkp~~l~~G---~n~Vtk~Iek-kKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~-- 185 (259)
|+|++ ..++||..-+.| +.+++..+.+ |--.++|+.+- .+..+..+|..+....++.+.++.-.+.||.
T Consensus 19 AaG~GtRm~~~~pK~l~pv~gkp~i~~~l~~~~~~g~~~i~vv~~~-~~~~i~~~~~~~~~~~~~~i~~~~q~~~lGTa~ 97 (501)
T 3st8_A 19 AAGPGTRMRSDTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGH-DHQRIAPLVGELADTLGRTIDVALQDRPLGTGH 97 (501)
T ss_dssp ECSCCGGGCCSSCGGGCEETTEEHHHHHHHHHHHHCCSEEEEEECT-THHHHHHHHHHHHHHHTSCCEEEECSSCCCHHH
T ss_pred CCcCcccCCCCCCHHHeEECChhHHHHHHHHHHhCCCCEEEEEeCC-CHHHHHHHHHHHHHhcCCcEEEEEcCCCCCcHH
Confidence 36776 235677766677 3566666554 54555555543 3446777788888888888888877788874
Q ss_pred hh-------cCCc--eEEEEEeecCcccHHHHHHHHHHHHH
Q 025016 186 IV-------HKKT--ASVLCLTTVKNEDKMEFSKILEAIKA 217 (259)
Q Consensus 186 av-------Gkk~--~a~VAitd~g~eDk~~l~kLve~i~~ 217 (259)
|+ .... ...|...|..--+...+..|++..+.
T Consensus 98 Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~ 138 (501)
T 3st8_A 98 AVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRA 138 (501)
T ss_dssp HHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhh
Confidence 32 1221 22333334333445667777766554
No 84
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=31.23 E-value=2e+02 Score=26.99 Aligned_cols=99 Identities=9% Similarity=0.138 Sum_probs=63.6
Q ss_pred ceeecchHHHHHHHH----hCCccEEEEeC---CCCch--hhHhhHHHHhhhcCCCEEEECCccchhhh-hcC-CceEEE
Q 025016 127 IVVKYGLNHVTYLIE----QNKAQLVVIAH---DVDPI--ELVVWLPALCRKMEIPYCIVKGKSRLGSI-VHK-KTASVL 195 (259)
Q Consensus 127 ~~l~~G~n~Vtk~Ie----kkKAkLVVIA~---DvsP~--elv~~LpaLC~~~~VPy~~v~sK~eLG~a-vGk-k~~a~V 195 (259)
..+++|++.|..++. =..|.|||..+ |..-. ....-+-.+|++ +||++.+-+....+.- +.. ...++.
T Consensus 257 a~l~~G~~~v~~~~~l~~~l~~ADLVITGEG~~D~QT~~GK~p~gVa~~A~~-~~PviaiaG~~~~~~~~~~~~Gi~a~f 335 (371)
T 1to6_A 257 ASIVSGIDTCLDLIDFDKKVSDVDLVIVGEGRLDRQSLAGKAPIGVAKRTPV-GVPVVAICGSLVEDLPSLPFENIQAAF 335 (371)
T ss_dssp CEEEEHHHHHHHHTTHHHHTTTCSEEEECCSEECSTTTTTCHHHHHHTTSCT-TCCEEEEESEECTTCCCSSBTTEEEEE
T ss_pred CEeccHHHHHHHhhCHHHHhcCCCEEEECCCCCCCCCCCCcHHHHHHHHHhc-CCCEEEEeCCCCCChHHHHhcCCcEEE
Confidence 358999999998762 25699999988 65432 122335667888 9999988776654422 111 123455
Q ss_pred EEeecCcccHHHHHHHHHHHHHhhhhhhHhhhhhc
Q 025016 196 CLTTVKNEDKMEFSKILEAIKANFNDKYEELRKKW 230 (259)
Q Consensus 196 Aitd~g~eDk~~l~kLve~i~~~y~d~y~e~~~~w 230 (259)
.+++... .+++.++....|..+.-+.+.|.|
T Consensus 336 ~i~~~~~----~l~~a~~~a~~~L~~~a~~i~r~~ 366 (371)
T 1to6_A 336 SILEKSE----PLEDSLKNASLYLEHTASNIGHLL 366 (371)
T ss_dssp ECCCSCC----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCC----CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554432 355666666677777777888888
No 85
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=30.29 E-value=93 Score=22.05 Aligned_cols=55 Identities=7% Similarity=0.087 Sum_probs=31.8
Q ss_pred ecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhh-cCCCEEEECCccchh
Q 025016 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRK-MEIPYCIVKGKSRLG 184 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~-~~VPy~~v~sK~eLG 184 (259)
.....+....++.....+||+-.+....+-...+..+.+. .++|++.+.+.....
T Consensus 37 ~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~ 92 (130)
T 3eod_A 37 AADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMA 92 (130)
T ss_dssp ESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCCHH
T ss_pred eCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHH
Confidence 4456677888888889999997655332222223333322 368888877655433
No 86
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=30.08 E-value=41 Score=24.91 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=28.0
Q ss_pred CccEEEEeCCCCc--hhhHhhHHHHhhhcCCCEEEECCccchhh
Q 025016 144 KAQLVVIAHDVDP--IELVVWLPALCRKMEIPYCIVKGKSRLGS 185 (259)
Q Consensus 144 KAkLVVIA~DvsP--~elv~~LpaLC~~~~VPy~~v~sK~eLG~ 185 (259)
.+..+|+.-|++. .....++..+....++|++++.+|.+|-.
T Consensus 79 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 3555666666543 23334566667778999999999988753
No 87
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=29.74 E-value=1.7e+02 Score=21.64 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=23.6
Q ss_pred ccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhh
Q 025016 145 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIV 187 (259)
Q Consensus 145 AkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~av 187 (259)
+.+|.|..|-++.. +....+++++++..+.+..++....
T Consensus 68 v~~v~v~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (165)
T 3or5_A 68 FTFVGIAVNEQLPN----VKNYMKTQGIIYPVMMATPELIRAF 106 (165)
T ss_dssp EEEEEEECSCCHHH----HHHHHHHHTCCSCEEECCHHHHHHH
T ss_pred eEEEEEECCCCHHH----HHHHHHHcCCCCceEecCHHHHHHH
Confidence 45555555544433 3455677777777666666776666
No 88
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=29.39 E-value=1.5e+02 Score=21.04 Aligned_cols=54 Identities=6% Similarity=-0.046 Sum_probs=35.5
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhh-cCCCEEEECCccc
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRK-MEIPYCIVKGKSR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~-~~VPy~~v~sK~e 182 (259)
......+....++.....+||+-.+....+-...+..+.+. .++|++++.+...
T Consensus 36 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 90 (137)
T 3hdg_A 36 SAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSE 90 (137)
T ss_dssp EESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCC
T ss_pred EECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcC
Confidence 44556778888888899999998766543333434444443 3688877766554
No 89
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=29.30 E-value=1.6e+02 Score=21.09 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=39.5
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHh---hhcCCCEEEECCccchhhh
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALC---RKMEIPYCIVKGKSRLGSI 186 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC---~~~~VPy~~v~sK~eLG~a 186 (259)
......+....++.....+||+-.+....+-...+..+. ...++|++++.+...-...
T Consensus 35 ~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~ 95 (140)
T 3grc_A 35 MVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGEL 95 (140)
T ss_dssp EECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHH
T ss_pred EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHH
Confidence 445567888889999999999987664433333344444 3468999998887655443
No 90
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=29.22 E-value=67 Score=29.02 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=30.1
Q ss_pred hHHHHHHHHhCCccEEEEeCCCCch------hh---HhhHHHHhhhcCCCEEEECCccc
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDVDPI------EL---VVWLPALCRKMEIPYCIVKGKSR 182 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvsP~------el---v~~LpaLC~~~~VPy~~v~sK~e 182 (259)
+..+...+...++.+||+|.|+-.. ++ ...|..|+. .++|++.+.+.-+
T Consensus 49 l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~-~~~pv~~v~GNHD 106 (386)
T 3av0_A 49 FKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHE-NNIKVYIVAGNHE 106 (386)
T ss_dssp HHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHH-TTCEEEECCCGGG
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHh-cCCcEEEEcCCCC
Confidence 4455666777789999999997321 11 222333322 3899888876543
No 91
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=28.50 E-value=81 Score=24.35 Aligned_cols=48 Identities=10% Similarity=0.258 Sum_probs=33.1
Q ss_pred eeec-chHHH--HHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEEC
Q 025016 128 VVKY-GLNHV--TYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 128 ~l~~-G~n~V--tk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
.++. |.++- ..+++--.+..+||+.+..|.+- +..+|+++|||++.+.
T Consensus 55 l~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~~~---i~~~A~~~~ipvl~t~ 105 (139)
T 2ioj_A 55 ALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQL---VLTKAEERGVPVILTG 105 (139)
T ss_dssp EEEEETTCHHHHHHHTTCTTEEEEEEETTCCCCHH---HHHHHHHHTCCEEECS
T ss_pred EEEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCCHH---HHHHHHHCCCeEEEEC
Confidence 3444 66543 23333145888999999888654 4588999999998766
No 92
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=28.49 E-value=2.1e+02 Score=22.31 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=50.8
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCc---eEEEEEeecCcccH
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKT---ASVLCLTTVKNEDK 205 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~---~a~VAitd~g~eDk 205 (259)
......+...+|.+|++..++....+ . ..+.++.+- +.++.. ...... ..++++... +.
T Consensus 143 ~~~~~~~~~~~L~~g~vDa~~~~~~~----~----~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~k~---~~ 204 (242)
T 3del_B 143 SFDSTLEVLMEVMHGKSPVAVLEPSI----A----QVVLKDFPA-LSTATI------DLPEDQWVLGYGIGVASD---RP 204 (242)
T ss_dssp EESSHHHHHHHHHTTSSSEEEECHHH----H----HHHGGGCTT-EEEEEE------ECCGGGCEEEEEEEEETT---CH
T ss_pred EECCHHHHHHHHHcCCCCEEEecHHH----H----HHHHHhCCC-eEEecC------ccCcccccceEEEEEeCC---CH
Confidence 45678889999999999987654321 1 122233322 333221 111111 144555544 33
Q ss_pred HHHHHHHHHHHHhh-hhhhHhhhhhcCCCCCCchh
Q 025016 206 MEFSKILEAIKANF-NDKYEELRKKWGGGIMGSKS 239 (259)
Q Consensus 206 ~~l~kLve~i~~~y-~d~y~e~~~~wgg~~lg~ks 239 (259)
..++.+-+++.... +..|++|..+|+|..--+.+
T Consensus 205 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~~ 239 (242)
T 3del_B 205 ALALKIEAAVQEIRKEGVLAELEQKWGLNNLEHHH 239 (242)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSSTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCcccc
Confidence 33444444444444 36899999999997665544
No 93
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=28.42 E-value=1.1e+02 Score=23.75 Aligned_cols=45 Identities=9% Similarity=0.214 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCccEEEEeCCCCc-------hhhHhhHHHHhhhcCCCEEEEC
Q 025016 134 NHVTYLIEQNKAQLVVIAHDVDP-------IELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvsP-------~elv~~LpaLC~~~~VPy~~v~ 178 (259)
..+++.++...+++|++..-..+ .++-..+..+|++++|+|+-+.
T Consensus 89 ~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~ 140 (190)
T 1ivn_A 89 RQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFF 140 (190)
T ss_dssp HHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCT
T ss_pred HHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccH
Confidence 34455666555777766532222 2344567889999999998764
No 94
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=28.41 E-value=75 Score=25.86 Aligned_cols=44 Identities=7% Similarity=0.119 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCccEEEEeCCC-CchhhHhhHHHHhhhcCCCEEEECCccc
Q 025016 134 NHVTYLIEQNKAQLVVIAHDV-DPIELVVWLPALCRKMEIPYCIVKGKSR 182 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~Dv-sP~elv~~LpaLC~~~~VPy~~v~sK~e 182 (259)
..+...++..++.+||++.|+ +| +....| +..++|++.|.+.-+
T Consensus 42 ~~~l~~~~~~~~D~ii~~GDl~~~-~~~~~l----~~l~~~~~~V~GNhD 86 (190)
T 1s3l_A 42 RKAIEIFNDENVETVIHCGDFVSL-FVIKEF----ENLNANIIATYGNND 86 (190)
T ss_dssp HHHHHHHHHSCCSEEEECSCCCST-HHHHHG----GGCSSEEEEECCTTC
T ss_pred HHHHHHHhhcCCCEEEECCCCCCH-HHHHHH----HhcCCCEEEEeCCCc
Confidence 344455566778999999996 44 332322 234678888776544
No 95
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=28.41 E-value=3e+02 Score=24.08 Aligned_cols=108 Identities=6% Similarity=0.116 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHH-------hCCccEEEEeCC---CCchhhHhhHHHHhhhcC
Q 025016 102 AAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE-------QNKAQLVVIAHD---VDPIELVVWLPALCRKME 171 (259)
Q Consensus 102 ~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~Ie-------kkKAkLVVIA~D---vsP~elv~~LpaLC~~~~ 171 (259)
+|+ .+++..+.+.++|+ -|.++-.|.+.+..+|+ -|=-.++++..- .++.+++.|+.++|+.-+
T Consensus 60 ~Er-~~v~~~~~~~~~gr-----vpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~ 133 (297)
T 3flu_A 60 EEH-TAVIEAVVKHVAKR-----VPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATS 133 (297)
T ss_dssp HHH-HHHHHHHHHHHTTS-----SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC
T ss_pred HHH-HHHHHHHHHHhCCC-----CcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 344 45666666555553 45555556555555554 243444455432 466789999999999999
Q ss_pred CCEEEECC---------ccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHHh
Q 025016 172 IPYCIVKG---------KSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKAN 218 (259)
Q Consensus 172 VPy~~v~s---------K~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~ 218 (259)
+|++++.- -+.+.++.. ...+++|-|.. .|-..+..+++....+
T Consensus 134 lPiilYn~P~~tg~~l~~~~~~~La~--~pnivgiKdss-gd~~~~~~~~~~~~~~ 186 (297)
T 3flu_A 134 IPMIIYNVPGRTVVSMTNDTILRLAE--IPNIVGVKEAS-GNIGSNIELINRAPEG 186 (297)
T ss_dssp SCEEEEECHHHHSSCCCHHHHHHHTT--STTEEEEEECS-CCHHHHHHHHHHSCTT
T ss_pred CCEEEEECCchhccCCCHHHHHHHHc--CCCEEEEEeCC-CCHHHHHHHHHhcCCC
Confidence 99987642 223445542 23568888764 4666666666554433
No 96
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=28.38 E-value=76 Score=30.61 Aligned_cols=22 Identities=9% Similarity=0.434 Sum_probs=18.1
Q ss_pred hHHHHHHHHhCCccEEEEeCCC
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDV 154 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~Dv 154 (259)
+..++..+...++.+|||+.|+
T Consensus 104 l~~lv~~~~~~~~D~VliaGDL 125 (472)
T 4fbk_A 104 FNEILEIARERDVDMILLGGDI 125 (472)
T ss_dssp HHHHHHHHHHTTCSEEEECSCS
T ss_pred HHHHHHHHHhcCCCEEEEcCcc
Confidence 3566777777889999999998
No 97
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=28.30 E-value=1.6e+02 Score=20.74 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=34.1
Q ss_pred eecchHHHHHHHHh-------CCccEEEEeCCCCchhhHhhHHHHhhh---cCCCEEEECCccc
Q 025016 129 VKYGLNHVTYLIEQ-------NKAQLVVIAHDVDPIELVVWLPALCRK---MEIPYCIVKGKSR 182 (259)
Q Consensus 129 l~~G~n~Vtk~Iek-------kKAkLVVIA~DvsP~elv~~LpaLC~~---~~VPy~~v~sK~e 182 (259)
......+....++. ....+||+-.+....+-...+..+.+. .++|++.+.+...
T Consensus 33 ~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 33 TVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp EECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCC
T ss_pred EECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCc
Confidence 33455677777777 678999998776443333334444443 5799988766543
No 98
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=28.00 E-value=1.3e+02 Score=21.60 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=33.0
Q ss_pred ecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhc-CCCEEEECCccc
Q 025016 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKM-EIPYCIVKGKSR 182 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~-~VPy~~v~sK~e 182 (259)
.....+....++.....+|| -.|.+..++...|... . ++|++++.+...
T Consensus 48 ~~~~~~al~~l~~~~~dlvi-~~~~~g~~~~~~l~~~---~~~~~ii~ls~~~~ 97 (137)
T 2pln_A 48 TESLEDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEK---HSSIVVLVSSDNPT 97 (137)
T ss_dssp ESCHHHHHHHHHHSCCSEEE-ECSTTHHHHHHHHHHH---STTSEEEEEESSCC
T ss_pred eCCHHHHHHHHHcCCCCEEE-EcCccHHHHHHHHHhc---CCCccEEEEeCCCC
Confidence 34456777888888889988 6666665555544443 5 789888766543
No 99
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=27.92 E-value=92 Score=25.46 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=17.9
Q ss_pred hHHHHHHHHhCCccEEEEeCCCCc
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDVDP 156 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvsP 156 (259)
+..+...++..++.+||++.|+..
T Consensus 21 ~~~~l~~~~~~~~D~vi~~GDl~~ 44 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVVGNILK 44 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCC
Confidence 345556666678999999999854
No 100
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=27.57 E-value=3.2e+02 Score=24.04 Aligned_cols=106 Identities=11% Similarity=0.245 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHH-------hCCccEEEEeCC---CCchhhHhhHHHHhhhcCCCEE
Q 025016 106 ERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE-------QNKAQLVVIAHD---VDPIELVVWLPALCRKMEIPYC 175 (259)
Q Consensus 106 ~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~Ie-------kkKAkLVVIA~D---vsP~elv~~LpaLC~~~~VPy~ 175 (259)
.+++..+.+.++|+ -|.+.-.|.+.+..+|+ .|=-.++++..- .++.++..|+.++|+.-++|++
T Consensus 68 ~~v~~~~~~~~~gr-----vpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPii 142 (301)
T 1xky_A 68 VALYRHVVSVVDKR-----VPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVM 142 (301)
T ss_dssp HHHHHHHHHHHTTS-----SCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEE
T ss_pred HHHHHHHHHHhCCC-----ceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 45666666555553 35444455544444443 233345555543 3667899999999999999988
Q ss_pred EEC---------CccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHHhh
Q 025016 176 IVK---------GKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANF 219 (259)
Q Consensus 176 ~v~---------sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~y 219 (259)
++. +-+.+.++.. ...+++|-|.. .|-..+.++++....+|
T Consensus 143 lYn~P~~tg~~l~~~~~~~La~--~pnIvgiKdss-gd~~~~~~~~~~~~~~f 192 (301)
T 1xky_A 143 LYNVPGRSIVQISVDTVVRLSE--IENIVAIKDAG-GDVLTMTEIIEKTADDF 192 (301)
T ss_dssp EEECHHHHSSCCCHHHHHHHHT--STTEEEEEECS-SCHHHHHHHHHHSCTTC
T ss_pred EEeCccccCCCCCHHHHHHHHc--CCCEEEEEcCC-CCHHHHHHHHHhcCCCe
Confidence 754 2223445542 23578888775 46666666665544333
No 101
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=27.56 E-value=3.3e+02 Score=24.19 Aligned_cols=141 Identities=11% Similarity=0.236 Sum_probs=79.9
Q ss_pred CCccccccc--ccCChhhHHHHHhhhhcC--------------CcccHHHHHHHHHHHHHHHHcCCCCccCCCceeecch
Q 025016 70 VPPALNQFT--KTLDKNLASSLFKLLLKY--------------RPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGL 133 (259)
Q Consensus 70 vpp~inqf~--~~ld~~~a~~l~kl~~ky--------------rPe~k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~ 133 (259)
+||.+--|+ ..+|...-.++.+.+-.- --=|.+|+ .+++..+.+.++|+ -|.++-.|.
T Consensus 28 ~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er-~~v~~~~v~~~~gr-----vpViaGvg~ 101 (314)
T 3qze_A 28 MVALVTPFDAQGRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEH-IQVIRRVVDQVKGR-----IPVIAGTGA 101 (314)
T ss_dssp EEECCCCBCTTSCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHH-HHHHHHHHHHHTTS-----SCEEEECCC
T ss_pred EEeeECCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCC-----CcEEEeCCC
Confidence 355555564 346666555555443210 01133444 55666666655554 455555665
Q ss_pred HHHHHHHH-------hCCccEEEEeC---CCCchhhHhhHHHHhhhcCCCEEEECC---------ccchhhhhcCCceEE
Q 025016 134 NHVTYLIE-------QNKAQLVVIAH---DVDPIELVVWLPALCRKMEIPYCIVKG---------KSRLGSIVHKKTASV 194 (259)
Q Consensus 134 n~Vtk~Ie-------kkKAkLVVIA~---DvsP~elv~~LpaLC~~~~VPy~~v~s---------K~eLG~avGkk~~a~ 194 (259)
+.+..+|+ -|=-.++++.. -.++.+++.|+.++|+.-++|++++.- -+.+.++.. ...+
T Consensus 102 ~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~--~pnI 179 (314)
T 3qze_A 102 NSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSK--VPNI 179 (314)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHT--STTE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc--CCCE
Confidence 55555554 24344445543 235678999999999999999987642 223445552 2357
Q ss_pred EEEeecCcccHHHHHHHHHHHHHhh
Q 025016 195 LCLTTVKNEDKMEFSKILEAIKANF 219 (259)
Q Consensus 195 VAitd~g~eDk~~l~kLve~i~~~y 219 (259)
++|-|.. .|-..+..+++....+|
T Consensus 180 vgiKdss-gd~~~~~~~~~~~~~~f 203 (314)
T 3qze_A 180 IGIKEAT-GDLQRAKEVIERVGKDF 203 (314)
T ss_dssp EEEEECS-CCHHHHHHHHHHSCTTS
T ss_pred EEEEcCC-CCHHHHHHHHHHcCCCe
Confidence 8888764 46666666666554433
No 102
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=26.86 E-value=1.2e+02 Score=26.45 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=27.1
Q ss_pred hHHHHHHHHhCCccEEEEeCCCC----ch--hhHhhHHHHhh--hcCCCEEEECCc
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDVD----PI--ELVVWLPALCR--KMEIPYCIVKGK 180 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~Dvs----P~--elv~~LpaLC~--~~~VPy~~v~sK 180 (259)
...+...+...++.+||+|.|+- |. .+..+...+.+ ..++|++.+.+.
T Consensus 29 ~~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~GN 84 (333)
T 1ii7_A 29 FKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGN 84 (333)
T ss_dssp HHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECCT
T ss_pred HHHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCCc
Confidence 34555666677888999999973 21 12221122222 346887777654
No 103
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=26.78 E-value=49 Score=28.43 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=22.3
Q ss_pred CCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccch
Q 025016 143 NKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRL 183 (259)
Q Consensus 143 kKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eL 183 (259)
..+.+||+--|++..+-...+.....+.++|++++.+|.+|
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl 124 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDI 124 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHH
T ss_pred cCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccc
Confidence 44555555555554433333444445556666666666655
No 104
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=26.72 E-value=2.3e+02 Score=24.95 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=33.6
Q ss_pred hHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECC
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
.+.+.+++..+.+.-||.....+...+..++..+|..++||.+.+..
T Consensus 52 ~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~a 98 (364)
T 3qel_B 52 ITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHG 98 (364)
T ss_dssp HHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEG
T ss_pred HHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeec
Confidence 56677777777776766666655434455578899999999987553
No 105
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=26.05 E-value=3.3e+02 Score=23.72 Aligned_cols=110 Identities=13% Similarity=0.202 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHH-------hCCccEEEEeC---CCCchhhHhhHHHHhhhc
Q 025016 101 RAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE-------QNKAQLVVIAH---DVDPIELVVWLPALCRKM 170 (259)
Q Consensus 101 k~eK~~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~Ie-------kkKAkLVVIA~---DvsP~elv~~LpaLC~~~ 170 (259)
.+|+ .+++..+.+.++|+ -|.+.-.|.+.+..+|+ -|=-.++++.. -.++.+++.|+.++|+.-
T Consensus 53 ~~Er-~~v~~~~~~~~~gr-----~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~ 126 (291)
T 3tak_A 53 MEEH-TQVIKEIIRVANKR-----IPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAV 126 (291)
T ss_dssp HHHH-HHHHHHHHHHHTTS-----SCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHhCCC-----CeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 3444 45666666554553 45555556555555554 24334444543 346678999999999999
Q ss_pred CCCEEEECC---------ccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHHhh
Q 025016 171 EIPYCIVKG---------KSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANF 219 (259)
Q Consensus 171 ~VPy~~v~s---------K~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~y 219 (259)
++|++++.- -+.+.++.. ...+++|-|.. .|-..+..+++....+|
T Consensus 127 ~lPiilYn~P~~tg~~l~~~~~~~La~--~pnivgiK~ss-gd~~~~~~~~~~~~~~f 181 (291)
T 3tak_A 127 ELPLILYNVPGRTGVDLSNDTAVRLAE--IPNIVGIKDAT-GDVPRGKALIDALNGKM 181 (291)
T ss_dssp CSCEEEEECHHHHSCCCCHHHHHHHTT--STTEEEEEECS-CCHHHHHHHHHHHTTSS
T ss_pred CCCEEEEecccccCCCCCHHHHHHHHc--CCCEEEEEeCC-CCHHHHHHHHHHcCCCe
Confidence 999987632 223445552 23578888764 56666777776665443
No 106
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=25.88 E-value=1.4e+02 Score=24.43 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=30.6
Q ss_pred hHHHHHHHHhC--CccEEEEeCCCCch---hhHhhHHHHhhhcCCCEEEECCccch
Q 025016 133 LNHVTYLIEQN--KAQLVVIAHDVDPI---ELVVWLPALCRKMEIPYCIVKGKSRL 183 (259)
Q Consensus 133 ~n~Vtk~Iekk--KAkLVVIA~DvsP~---elv~~LpaLC~~~~VPy~~v~sK~eL 183 (259)
+..++..+.+. ++.+||++.|.... +-...+-.+.+..++|++.+.+.-+.
T Consensus 28 l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD~ 83 (274)
T 3d03_A 28 NADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDD 83 (274)
T ss_dssp HHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCTTSC
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 34455555543 57899999997421 11123344556668998888766543
No 107
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=25.86 E-value=72 Score=28.90 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=31.1
Q ss_pred hHHHHHHHHhCCccEEEEeCCCC-c----h-----hhHhhHHHHhhhcCCCEEEECCccc
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDVD-P----I-----ELVVWLPALCRKMEIPYCIVKGKSR 182 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~Dvs-P----~-----elv~~LpaLC~~~~VPy~~v~sK~e 182 (259)
++.+...++..++.+||||.|+- . . .+..+|..|... +|++++.+.-+
T Consensus 32 l~~l~~~~~~~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~--~~v~~i~GNHD 89 (379)
T 3tho_B 32 LDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLPGNQD 89 (379)
T ss_dssp HHHHHHHHHHHTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH--SCEEECCCTTS
T ss_pred HHHHHHHHHhcCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC--CCEEEEcCCCc
Confidence 45566666777889999999986 2 1 223444555443 89888876544
No 108
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=25.81 E-value=1.6e+02 Score=21.58 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=24.9
Q ss_pred ccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEEC-CccchhhhhcCCc
Q 025016 145 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVK-GKSRLGSIVHKKT 191 (259)
Q Consensus 145 AkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~-sK~eLG~avGkk~ 191 (259)
..+|.|..|-+ +. ..+..+++.+++++.++. ...++....|...
T Consensus 62 ~~~v~v~~d~~--~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (154)
T 3kcm_A 62 FRMLCVSIDEG--GK-VAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG 106 (154)
T ss_dssp EEEEEEECCTT--HH-HHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred eEEEEEEcCCc--ch-HHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence 44555555543 11 235667777787766544 3445777777654
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=25.26 E-value=66 Score=24.50 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=25.4
Q ss_pred CccEEEEeCCCCchh-hHhhHHHHhhhcCCCEEEECCccchh
Q 025016 144 KAQLVVIAHDVDPIE-LVVWLPALCRKMEIPYCIVKGKSRLG 184 (259)
Q Consensus 144 KAkLVVIA~DvsP~e-lv~~LpaLC~~~~VPy~~v~sK~eLG 184 (259)
.+.+|++.-|++..+ ...++..+. +.++|++++.+|.+|-
T Consensus 81 ~~~~~i~v~D~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 81 KPDLVVNIVDATALERNLYLTLQLM-EMGANLLLALNKMDLA 121 (165)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHH-HTTCCEEEEEECHHHH
T ss_pred CCCEEEEEecCCchhHhHHHHHHHH-hcCCCEEEEEEchHhc
Confidence 466677777775432 333344443 3689999999988874
No 110
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=25.10 E-value=3.5e+02 Score=23.99 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHH------h-CC-ccEEEEeCC---CCchhhHhhHHHHhhhcCCCE
Q 025016 106 ERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE------Q-NK-AQLVVIAHD---VDPIELVVWLPALCRKMEIPY 174 (259)
Q Consensus 106 ~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~Ie------k-kK-AkLVVIA~D---vsP~elv~~LpaLC~~~~VPy 174 (259)
.+++..+.+.++|+ -|.+.-.|.+.+..+|+ . |- -.++++..- .++.+++.|+.++|+.-++|+
T Consensus 63 ~~v~~~~~~~~~gr-----vpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPi 137 (311)
T 3h5d_A 63 LELFAAVQKVVNGR-----VPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPI 137 (311)
T ss_dssp HHHHHHHHHHSCSS-----SCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCE
T ss_pred HHHHHHHHHHhCCC-----CcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 45666665543443 45555556555555543 2 43 234444422 356789999999999999999
Q ss_pred EEECC---------ccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHHh
Q 025016 175 CIVKG---------KSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKAN 218 (259)
Q Consensus 175 ~~v~s---------K~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~ 218 (259)
+++.- -+.+.++... ..+++|-|.. |-..+..+++....+
T Consensus 138 ilYn~P~~tg~~l~~~~~~~La~~--pnIvgiKdss--d~~~~~~~~~~~~~~ 186 (311)
T 3h5d_A 138 IIYNIPGRVVVELTPETMLRLADH--PNIIGVKECT--SLANMAYLIEHKPEE 186 (311)
T ss_dssp EEEECHHHHSSCCCHHHHHHHHTS--TTEEEEEECS--CHHHHHHHHHHCCSS
T ss_pred EEEecccccCCCCCHHHHHHHhcC--CCEEEEEeCC--CHHHHHHHHHHcCCC
Confidence 87642 2234455543 3578888875 776677776654433
No 111
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=25.08 E-value=96 Score=27.08 Aligned_cols=46 Identities=24% Similarity=0.522 Sum_probs=27.0
Q ss_pred hHHHHHHHHhCCccEEEEeCC-CC----c-hh----hHhhHHHHhhhcCCCEEEECCc
Q 025016 133 LNHVTYLIEQNKAQLVVIAHD-VD----P-IE----LVVWLPALCRKMEIPYCIVKGK 180 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~D-vs----P-~e----lv~~LpaLC~~~~VPy~~v~sK 180 (259)
++.+...++..++.+||+|.| +- | .+ +..+|..|... +|++.+.+.
T Consensus 50 l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~--~pv~~i~GN 105 (336)
T 2q8u_A 50 LDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLPGN 105 (336)
T ss_dssp HHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH--SCEEECCC-
T ss_pred HHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc--CCEEEECCC
Confidence 345555666667889999999 52 2 11 23344444433 887777654
No 112
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=25.01 E-value=1e+02 Score=25.59 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=21.9
Q ss_pred EEeCCCCchhhHhhHHHHhhhcCCCEE-EECCccchhhhhcCC
Q 025016 149 VIAHDVDPIELVVWLPALCRKMEIPYC-IVKGKSRLGSIVHKK 190 (259)
Q Consensus 149 VIA~DvsP~elv~~LpaLC~~~~VPy~-~v~sK~eLG~avGkk 190 (259)
||.+.+++..-...+..+++.+++|+. .+.....+.++....
T Consensus 179 vv~N~~~~~~~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~~~g 221 (269)
T 1cp2_A 179 IICNSRKVANEYELLDAFAKELGSQLIHFVPRSPMVTKAEINK 221 (269)
T ss_dssp EEEECCSSSCCHHHHHHHHHHHTCCEEEEECCCHHHHHHHHTT
T ss_pred EEeecCCcchhHHHHHHHHHHcCCcccccCCCCcHHHHHHHcC
Confidence 444444432222335566677777754 355556666655443
No 113
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=24.88 E-value=74 Score=27.71 Aligned_cols=43 Identities=14% Similarity=0.317 Sum_probs=30.2
Q ss_pred hHHHHHHHHhCCccEEEEeCCC--CchhhHhhHHHHhhhcCCCEEE
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDV--DPIELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~Dv--sP~elv~~LpaLC~~~~VPy~~ 176 (259)
.+.+..++...+.++|++.+-. .+.++ ..|-.+|+++|++++.
T Consensus 161 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l-~~i~~l~~~~~~~li~ 205 (425)
T 3ecd_A 161 YDQVEALAQQHKPSLIIAGFSAYPRKLDF-ARFRAIADSVGAKLMV 205 (425)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCCCSCCCH-HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHhhcCCcEEEEccccCCCcCCH-HHHHHHHHHcCCEEEE
Confidence 4667778876668888887422 22344 5588999999998763
No 114
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=24.86 E-value=55 Score=27.94 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=20.3
Q ss_pred CCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccch
Q 025016 143 NKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRL 183 (259)
Q Consensus 143 kKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eL 183 (259)
..+.+||+--|++..+-...+.....++++|++++.+|.++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl 122 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDI 122 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHH
T ss_pred CCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhc
Confidence 34555555555544333333444444555666665555544
No 115
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=24.80 E-value=2e+02 Score=21.20 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=32.5
Q ss_pred ccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCc----cchhhhhcCCceEEEEEeec
Q 025016 145 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK----SRLGSIVHKKTASVLCLTTV 200 (259)
Q Consensus 145 AkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK----~eLG~avGkk~~a~VAitd~ 200 (259)
+.+|.|..|-++.+ +....+++++++..+.+. .++....|....-.+.|+|.
T Consensus 70 ~~~v~v~~d~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~ 125 (150)
T 3fw2_A 70 IGMLGISLDVDKQQ----WKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSS 125 (150)
T ss_dssp EEEEEEECCSCHHH----HHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECT
T ss_pred eEEEEEEcCCCHHH----HHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECC
Confidence 56666666655433 455668889998877764 46777777654333445543
No 116
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=24.20 E-value=3.7e+02 Score=23.71 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=18.3
Q ss_pred CCchhhHhhHHHHhhhcCCCEEEECC
Q 025016 154 VDPIELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 154 vsP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
.+|.++ ..|..++++.+|+++|+..
T Consensus 223 ps~~~l-~~l~~~ik~~~v~~If~e~ 247 (312)
T 2o1e_A 223 PSAASL-AKLKTYAKEHNVKVIYFEE 247 (312)
T ss_dssp CCHHHH-HHHHHHTTSSCCCEEECSS
T ss_pred CCHHHH-HHHHHHHHHcCCCEEEEeC
Confidence 455555 4478889999999998764
No 117
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=24.10 E-value=63 Score=30.13 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=52.5
Q ss_pred CCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHH-hhhhhhHhhhhhcC
Q 025016 153 DVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKA-NFNDKYEELRKKWG 231 (259)
Q Consensus 153 DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~-~y~d~y~e~~~~wg 231 (259)
+++..+++.||.-+|+-.|+-.+-++|--. |-. .-.+-+|-..+..|++.+.. .|.+ ++|.+-||
T Consensus 279 ~~tl~~~~~Hi~hi~~l~G~dhVgiGsDfd-----G~~-------~p~gl~d~s~~p~L~~~L~~rG~se--~~i~ki~g 344 (364)
T 3ly0_A 279 EMGWEPVLRHLDHLIDRLGEDHVGMGSDFD-----GAT-------IPQGIADVTGLPALQAAMRAHGYDE--PLMRKLCH 344 (364)
T ss_dssp CCCSHHHHHHHHHHHHHHCTTSEEECCCBT-----TSC-------CCTTTCSGGGHHHHHHHHHHHTCCH--HHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEECCCCC-----CCC-------CCCCCCCHHHHHHHHHHHHHCCCCH--HHHHHHHh
Confidence 567788999999999999999888776543 211 22445777788888876655 5988 68999999
Q ss_pred CCCC
Q 025016 232 GGIM 235 (259)
Q Consensus 232 g~~l 235 (259)
||.|
T Consensus 345 ~N~l 348 (364)
T 3ly0_A 345 ENWY 348 (364)
T ss_dssp HHHH
T ss_pred HhHH
Confidence 9976
No 118
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=23.98 E-value=2.5e+02 Score=22.79 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=58.7
Q ss_pred hHHHHHHHHhCC-ccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhc---------CCceEEEEEeecCc
Q 025016 133 LNHVTYLIEQNK-AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVH---------KKTASVLCLTTVKN 202 (259)
Q Consensus 133 ~n~Vtk~IekkK-AkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avG---------kk~~a~VAitd~g~ 202 (259)
+.++...+++-. .-+|+=..+++-.++ ..|..-|+..|+-|..+++.- +..|++ .+-.++++|+
T Consensus 10 v~el~~~l~~~~~~v~v~~~~gltv~~~-~~LR~~lr~~g~~~~V~KNtL-~~~Al~~~~~~~~~~l~G~~a~~fs---- 83 (173)
T 2j01_J 10 LATLKENLERAQGSFFLVNYQGLPAKET-HALRQALKQNGARLFVAKNTL-IRLALKELGLPELDGLQGPSAVVFY---- 83 (173)
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCCHHHH-HHHHHHHHHCCcEEEEehhHH-HHHHHhcCCCCccccccCCEEEEEe----
Confidence 345556666655 444444455555444 447888888888777666432 222222 1224677777
Q ss_pred ccHHHHHHHHHHHHHhhh-hhhHhhhhhcCCCCCCchhHHHHHHH
Q 025016 203 EDKMEFSKILEAIKANFN-DKYEELRKKWGGGIMGSKSQAKTKAK 246 (259)
Q Consensus 203 eDk~~l~kLve~i~~~y~-d~y~e~~~~wgg~~lg~ks~~~~~k~ 246 (259)
+|..+..+++..+...+. +...=.---.+|.+++...+..++++
T Consensus 84 ~dp~~~ak~l~~f~k~~~~~~l~ikgg~~eg~~~~~~~v~~la~L 128 (173)
T 2j01_J 84 EDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTAKDVEALAEL 128 (173)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEEEECCEEcCHHHHHHHhcC
Confidence 366667777765543221 33321122345667777666666654
No 119
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=23.94 E-value=1.3e+02 Score=23.74 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=45.5
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcC-------CCEEEECCccchhhhhcCCceEEEEEeecC
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKME-------IPYCIVKGKSRLGSIVHKKTASVLCLTTVK 201 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~-------VPy~~v~sK~eLG~avGkk~~a~VAitd~g 201 (259)
......+...++.+|++..++....+ +..+..+.+ -.+.++.. .++.....++++...+
T Consensus 136 ~~~~~~~~~~~l~~G~vDa~~~~~~~--------~~~~~~~~~~~~~~l~~~l~~~~~------~~~~~~~~~~~~~k~~ 201 (237)
T 3kzg_A 136 FYELIQDMLLGLSNNQVDASLMDYEA--------AKYWMASEPYAYKLIGKKYKLIGK------KISIGEGYSIMANPDQ 201 (237)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHH--------HHHHHTTSSTTHHHHCCSEEEEEE------EEECTTCBCCEECGGG
T ss_pred EeCCHHHHHHHHHcCCCCEEEeCcHH--------HHHHHHhCCccccccCCceEEecC------ccccCccEEEEEcCCC
Confidence 44568889999999999988764321 112223322 13333322 1111112345554432
Q ss_pred cccHHHHHHHHHHHHHhhhhhhHhhhhhcCCCC
Q 025016 202 NEDKMEFSKILEAIKANFNDKYEELRKKWGGGI 234 (259)
Q Consensus 202 ~eDk~~l~kLve~i~~~y~d~y~e~~~~wgg~~ 234 (259)
.+-...+++.++.++. +..|++|..+|.|.-
T Consensus 202 ~~l~~~l~~~l~~l~~--~G~~~~i~~k~~~~~ 232 (237)
T 3kzg_A 202 FVLIKKINKILLEMEA--DGTYLRLYSEYFEGH 232 (237)
T ss_dssp HHHHHHHHHHHHHHHH--SSHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHH--CCcHHHHHHHHhCcc
Confidence 2222334444444433 357999999999864
No 120
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=23.77 E-value=59 Score=24.84 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=25.4
Q ss_pred CccEEEEeCCCC------chhhHhhHHHHhhh-----cCCCEEEECCccchh
Q 025016 144 KAQLVVIAHDVD------PIELVVWLPALCRK-----MEIPYCIVKGKSRLG 184 (259)
Q Consensus 144 KAkLVVIA~Dvs------P~elv~~LpaLC~~-----~~VPy~~v~sK~eLG 184 (259)
.+..+|+.-|++ ..+....+..+... .++|++++.+|.+|-
T Consensus 97 ~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~ 148 (198)
T 3t1o_A 97 GVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP 148 (198)
T ss_dssp TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence 467777777886 22222223333222 589999999998874
No 121
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=23.70 E-value=3.6e+02 Score=23.42 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHh-------CCccEEEEeCC---CCchhhHhhHHHHhhhcCCCEE
Q 025016 106 ERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ-------NKAQLVVIAHD---VDPIELVVWLPALCRKMEIPYC 175 (259)
Q Consensus 106 ~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~Iek-------kKAkLVVIA~D---vsP~elv~~LpaLC~~~~VPy~ 175 (259)
.+++..+.+.++|+ -|.+.-.|.+.+..+|+. |=-.++++..- .++.++..|+.++|+.-++|++
T Consensus 57 ~~v~~~~~~~~~gr-----~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPii 131 (291)
T 3a5f_A 57 KETIKFVIDKVNKR-----IPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPII 131 (291)
T ss_dssp HHHHHHHHHHHTTS-----SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEE
T ss_pred HHHHHHHHHHhCCC-----CcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 45555555544553 455555555555544432 33344455443 3667899999999999999988
Q ss_pred EEC---------CccchhhhhcCCceEEEEEeecCcccHHHHHHHHHHHHHhh
Q 025016 176 IVK---------GKSRLGSIVHKKTASVLCLTTVKNEDKMEFSKILEAIKANF 219 (259)
Q Consensus 176 ~v~---------sK~eLG~avGkk~~a~VAitd~g~eDk~~l~kLve~i~~~y 219 (259)
++. +-+.+.++.. ...+++|-|.. .|-..+.++++....+|
T Consensus 132 lYn~P~~tg~~l~~~~~~~La~--~pnivgiK~s~-gd~~~~~~~~~~~~~~f 181 (291)
T 3a5f_A 132 IYNVPGRTGLNITPGTLKELCE--DKNIVAVXEAS-GNISQIAQIKALCGDKL 181 (291)
T ss_dssp EEECHHHHSCCCCHHHHHHHTT--STTEEEEEECS-CCHHHHHHHHHHHGGGS
T ss_pred EEeCccccCCCCCHHHHHHHHc--CCCEEEEeCCC-CCHHHHHHHHHhcCCCe
Confidence 754 2223445542 23577887764 56666777776655444
No 122
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=23.63 E-value=94 Score=27.36 Aligned_cols=44 Identities=9% Similarity=0.133 Sum_probs=29.6
Q ss_pred hHHHHHHHHhCCccEEEEeCCCCch------hhHhhHHHHhhhcCCCEEE
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDVDPI------ELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvsP~------elv~~LpaLC~~~~VPy~~ 176 (259)
.+.+.+++++.+.++|+|.+=-+|. +-...|-.+|+++|+.++.
T Consensus 171 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 220 (437)
T 3g0t_A 171 REKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220 (437)
T ss_dssp HHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEE
Confidence 4556667756778899885433332 2245578899999998874
No 123
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=23.60 E-value=1.3e+02 Score=22.93 Aligned_cols=43 Identities=5% Similarity=-0.012 Sum_probs=29.1
Q ss_pred HHHHHHhCCccEEEEeCCCCc-------hhhHhhHHHHhhhcCCCEEEEC
Q 025016 136 VTYLIEQNKAQLVVIAHDVDP-------IELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 136 Vtk~IekkKAkLVVIA~DvsP-------~elv~~LpaLC~~~~VPy~~v~ 178 (259)
.++.++...+++|++..-..| .++-..+..+|+++++||+-..
T Consensus 95 ~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~ 144 (185)
T 3hp4_A 95 LVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFF 144 (185)
T ss_dssp HHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCT
T ss_pred HHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcch
Confidence 355566667788877632222 2445668899999999998654
No 124
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=23.25 E-value=2.1e+02 Score=20.55 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=34.2
Q ss_pred ecchHHHHHHHHh-CCccEEEEeCCCCc-hhhHhhHHHHhhhcCCCEEEECCccc
Q 025016 130 KYGLNHVTYLIEQ-NKAQLVVIAHDVDP-IELVVWLPALCRKMEIPYCIVKGKSR 182 (259)
Q Consensus 130 ~~G~n~Vtk~Iek-kKAkLVVIA~DvsP-~elv~~LpaLC~~~~VPy~~v~sK~e 182 (259)
.....+....+++ ....+||+-.+..+ .+-...+..+-+..++|++++.+..+
T Consensus 35 ~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~ 89 (140)
T 3h5i_A 35 ALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTE 89 (140)
T ss_dssp ESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSS
T ss_pred ecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 4455677777877 67899999876632 23333344444457899988776554
No 125
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=22.89 E-value=1.8e+02 Score=19.53 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=35.2
Q ss_pred ecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhh---cCCCEEEECCccc
Q 025016 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRK---MEIPYCIVKGKSR 182 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~---~~VPy~~v~sK~e 182 (259)
.....+....+......+||+-.+....+-...+..+.+. .++|++.+.+...
T Consensus 31 ~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 86 (119)
T 2j48_A 31 LVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPP 86 (119)
T ss_dssp ESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCC
T ss_pred ecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCC
Confidence 3455677788888889999998776544434445555554 5788887665443
No 126
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=22.85 E-value=3.9e+02 Score=23.53 Aligned_cols=107 Identities=9% Similarity=0.163 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCCCccCCCceeecchHHHHHHHHh-------CCccEEEEeC------CCCchhhHhhHHHHhhhcCC
Q 025016 106 ERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQ-------NKAQLVVIAH------DVDPIELVVWLPALCRKMEI 172 (259)
Q Consensus 106 ~rLl~lA~kkaaGk~~~~kkp~~l~~G~n~Vtk~Iek-------kKAkLVVIA~------DvsP~elv~~LpaLC~~~~V 172 (259)
.+++..+.+.++|+ -|.++-.|.+.+..+|+- |=-.++++.. -.++.+++.|+.++|+.-++
T Consensus 64 ~~v~~~~~~~~~gr-----vpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~l 138 (309)
T 3fkr_A 64 DVLTRTILEHVAGR-----VPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAI 138 (309)
T ss_dssp HHHHHHHHHHHTTS-----SCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhCCC-----CcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCC
Confidence 45666666555554 455555565555555542 3334444443 34678999999999999999
Q ss_pred CEEEECC---c-----cchhhhhc-CCceEEEEEeecCcccHHHHHHHHHHHHHhh
Q 025016 173 PYCIVKG---K-----SRLGSIVH-KKTASVLCLTTVKNEDKMEFSKILEAIKANF 219 (259)
Q Consensus 173 Py~~v~s---K-----~eLG~avG-kk~~a~VAitd~g~eDk~~l~kLve~i~~~y 219 (259)
|++++.- . +.+.++.. .. .+++|-+..+.|-..+..+++.....|
T Consensus 139 PiilYn~P~tg~~l~~~~~~~La~~~p--nIvgiK~~~~~~~~~~~~~~~~~~~~~ 192 (309)
T 3fkr_A 139 PIMVQDAPASGTALSAPFLARMAREIE--QVAYFXIETPGAANKLRELIRLGGDAI 192 (309)
T ss_dssp CEEEEECGGGCCCCCHHHHHHHHHHST--TEEEEEECSSSHHHHHHHHHHHHGGGC
T ss_pred CEEEEeCCCCCCCCCHHHHHHHHhhCC--CEEEEECCCcchHHHHHHHHHhcCCce
Confidence 9886542 1 22334442 22 467887443445556677776655443
No 127
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=22.83 E-value=2.8e+02 Score=21.81 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=47.7
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHH
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEF 208 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l 208 (259)
...+..++..++.+|++..++....+ . ..+.++.+- +.++. ..+.. .......++++... +....
T Consensus 164 ~~~~~~~~~~~l~~G~vDa~~~~~~~----~----~~~~~~~~~-~~~~~--~~~~~-~~~~~~~~~~~~k~---~~~l~ 228 (268)
T 3qax_A 164 SFDSTLEVIMEVRYGKSPVAVLEPSV----G----RVVLKDFPN-LVATR--LELPP-ECWVLGCGLGVAKD---RPEEI 228 (268)
T ss_dssp EESCHHHHHHHHHTTSSSEEEECHHH----H----HHHGGGCTT-EEEEE--EECCG-GGCBCCEEEEECTT---CHHHH
T ss_pred ecCCHHHHHHHHHcCCCCEEEecHHH----H----HHHHHhCCC-cEEec--CccCc-ccccccEEEEEeCC---CHHHH
Confidence 34578889999999999987654321 1 122233322 22222 11100 00001145665544 33333
Q ss_pred HHHHHHHHHhh-hhhhHhhhhhcCCCCC
Q 025016 209 SKILEAIKANF-NDKYEELRKKWGGGIM 235 (259)
Q Consensus 209 ~kLve~i~~~y-~d~y~e~~~~wgg~~l 235 (259)
+.+-+.+.... +..|++|..+|++...
T Consensus 229 ~~l~~~l~~l~~~g~~~~i~~k~~~~~~ 256 (268)
T 3qax_A 229 QTIQQAITDLKSEGVIQSLTKKWQLSEV 256 (268)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHcCCcc
Confidence 44444444443 3588999999998653
No 128
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.62 E-value=2e+02 Score=20.99 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=34.4
Q ss_pred ecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhh-cCCCEEEECCccc
Q 025016 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRK-MEIPYCIVKGKSR 182 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~-~~VPy~~v~sK~e 182 (259)
.....+....++.....+||+-.+....+-...+..+.+. .++|++++.+...
T Consensus 33 ~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 33 FASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp ESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred ECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 3445666677777889999998776543333444444443 4799998876554
No 129
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=22.59 E-value=99 Score=26.78 Aligned_cols=44 Identities=7% Similarity=0.327 Sum_probs=29.8
Q ss_pred hHHHHHHHHhCCccEEEEeCCCCc------hhhHhhHHHHhhhcCCCEEE
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDVDP------IELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvsP------~elv~~LpaLC~~~~VPy~~ 176 (259)
.+.+.+++...+.++|+|.+=-+| .+-...|-.+|+++|++++.
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 456777776557888888642223 22345578999999998774
No 130
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=22.57 E-value=2.8e+02 Score=21.76 Aligned_cols=92 Identities=17% Similarity=0.066 Sum_probs=51.6
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHH
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEF 208 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l 208 (259)
......+...++.+|++..++.-..+ + ..+.++.+-.+.++.. ........++++... +...+
T Consensus 130 ~~~~~~~~~~~L~~GrvDa~i~~~~~----~----~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~k~---~~~l~ 192 (232)
T 3i6v_A 130 EFATPEETIAAVRNGEADAVFADRDY----L----VPIVAESGGELMFVGD------DVPLGGGVGMGLRES---DGELR 192 (232)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHH----H----HHHHHHTTTSSEEEEE------EEECSSCEEEEECTT---CHHHH
T ss_pred EeCCHHHHHHHHHcCCcCEEEEChHH----H----HHHHHhCCCCeEEecC------CCCCCCcEEEEEeCC---CHHHH
Confidence 44577888999999999988764421 1 2233444333333321 111122345666533 33344
Q ss_pred HHHHHHHHHhhhh-hhHhhhhhcCCCCCCc
Q 025016 209 SKILEAIKANFND-KYEELRKKWGGGIMGS 237 (259)
Q Consensus 209 ~kLve~i~~~y~d-~y~e~~~~wgg~~lg~ 237 (259)
+.+-+++.....| .|++|..+|-|.-..+
T Consensus 193 ~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~ 222 (232)
T 3i6v_A 193 GKFDAAITSMKEDGTLNTMIKKWFGEDAAV 222 (232)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHCChHHHHHHHHcCCCCCc
Confidence 4444555555555 7899999997765443
No 131
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=22.50 E-value=2e+02 Score=20.09 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=35.0
Q ss_pred cchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCcc
Q 025016 131 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKS 181 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~ 181 (259)
....+....++.....+||+-.+....+-...+..+-+..++|++++.+..
T Consensus 33 ~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 33 HDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp SSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred CCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 445677888889999999998766444444445555556689988766544
No 132
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=22.40 E-value=1.3e+02 Score=24.84 Aligned_cols=50 Identities=14% Similarity=0.025 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCccEEEEeCCCCchh---------hHhhHHHHhhhcCCCEEEECCccch
Q 025016 134 NHVTYLIEQNKAQLVVIAHDVDPIE---------LVVWLPALCRKMEIPYCIVKGKSRL 183 (259)
Q Consensus 134 n~Vtk~IekkKAkLVVIA~DvsP~e---------lv~~LpaLC~~~~VPy~~v~sK~eL 183 (259)
..++..+...++.+||++.|+.... ....+-.+....++|++.+.+.=+.
T Consensus 41 ~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~ 99 (322)
T 2nxf_A 41 RDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWGNHEF 99 (322)
T ss_dssp HHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCCHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecCCCCc
Confidence 3444555567889999999985432 1122334445568999988876655
No 133
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=22.36 E-value=86 Score=26.68 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=20.7
Q ss_pred CCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccch
Q 025016 143 NKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRL 183 (259)
Q Consensus 143 kKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eL 183 (259)
..+.+||+.-|++..+-...+.....++++|++++.+|.+|
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl 122 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDE 122 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHH
T ss_pred cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCC
Confidence 44555555555543322222233334456777666666655
No 134
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=22.36 E-value=87 Score=27.18 Aligned_cols=43 Identities=5% Similarity=0.195 Sum_probs=30.3
Q ss_pred hHHHHHHHHhCCccEEEEeCCCCc--hhhHhhHHHHhhhcCCCEEE
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDVDP--IELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvsP--~elv~~LpaLC~~~~VPy~~ 176 (259)
...+.++|...+.++|++.+-..| .++ ..|-.+|+++|++++.
T Consensus 158 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l-~~l~~l~~~~~~~li~ 202 (420)
T 3gbx_A 158 YDEMAKLAKEHKPKMIIGGFSAYSGVVDW-AKMREIADSIGAYLFV 202 (420)
T ss_dssp HHHHHHHHHHHCCSEEEECCTTCCSCCCH-HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEEecCccCCccCH-HHHHHHHHHcCCEEEE
Confidence 567778888777889988542222 233 4588999999997764
No 135
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=22.21 E-value=67 Score=28.91 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=24.8
Q ss_pred CCCCchhhHhhHHHHhhhcCCCEEEECCc--cchhhhh
Q 025016 152 HDVDPIELVVWLPALCRKMEIPYCIVKGK--SRLGSIV 187 (259)
Q Consensus 152 ~DvsP~elv~~LpaLC~~~~VPy~~v~sK--~eLG~av 187 (259)
.+++| +....+..+++.+||||+...+- +.|+.+.
T Consensus 124 ~~vt~-~~~~~~~~lL~~~gi~~i~apgeAEA~lA~la 160 (336)
T 1rxw_A 124 GRVDE-YIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMA 160 (336)
T ss_dssp CCCCH-HHHHHHHHHHHHTTCCEEECSSCHHHHHHHHH
T ss_pred ccCCH-HHHHHHHHHHHhCCCCEEEcCchHHHHHHHHH
Confidence 45655 35566888889999999988873 3566655
No 136
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=21.95 E-value=1.8e+02 Score=23.03 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=32.4
Q ss_pred chHHHHHHHHhCCccEEEEeCCCCch--hhHhhHHHHhhhcCCCEEEECC
Q 025016 132 GLNHVTYLIEQNKAQLVVIAHDVDPI--ELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 132 G~n~Vtk~IekkKAkLVVIA~DvsP~--elv~~LpaLC~~~~VPy~~v~s 179 (259)
|+...+..++.|++..||+. +.|-. .....+..+|..+||.++++..
T Consensus 54 ~l~~ll~~~~~g~id~vvv~-~ldRL~R~~~~~l~~~l~~~gv~~~~~~~ 102 (154)
T 3lhk_A 54 NYKKLLKMVMNRKVEKVIIA-YPDRLTRFGFETLKEFFKSYGTEIVIINK 102 (154)
T ss_dssp HHHHHHHHHHTTCEEEEEES-SHHHHCSSCHHHHHHHHHHTTCEEEESCS
T ss_pred HHHHHHHHHHcCCCCEEEEE-eCCcccccHHHHHHHHHHHCCCEEEEEeC
Confidence 67888888999988776654 44321 1123356889999999887654
No 137
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=21.94 E-value=1.2e+02 Score=28.63 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=18.2
Q ss_pred hHHHHHHHHhCCccEEEEeCCCC
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDVD 155 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~Dvs 155 (259)
+..+...+...++.+||||.|+-
T Consensus 60 l~~ll~~~~~~~~D~VliaGDlf 82 (431)
T 3t1i_A 60 LDEILRLAQENEVDFILLGGDLF 82 (431)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCB
T ss_pred HHHHHHHHhhcCCCEEEEcCccc
Confidence 45566677778899999999984
No 138
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=21.93 E-value=1.3e+02 Score=25.33 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=30.6
Q ss_pred hHHHHHHHHhC------CccEEEEeCCCCc------hhhHhhHHHHhhhcCCCEEE
Q 025016 133 LNHVTYLIEQN------KAQLVVIAHDVDP------IELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~Iekk------KAkLVVIA~DvsP------~elv~~LpaLC~~~~VPy~~ 176 (259)
.+.+..+++.. +.++|++.+- +| .+-...|-++|+++|+.++.
T Consensus 128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (359)
T 1svv_A 128 VADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFL 182 (359)
T ss_dssp HHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEE
Confidence 56778888776 4888888753 33 22345588999999997753
No 139
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=21.82 E-value=99 Score=25.40 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccc
Q 025016 137 TYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSR 182 (259)
Q Consensus 137 tk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~e 182 (259)
...++..++.+||++.|+.+.+....|. ..++|++.|.+.-+
T Consensus 48 ~~~~~~~~~D~vi~~GDl~~~~~l~~l~----~~~~~v~~V~GNHD 89 (215)
T 2a22_A 48 RELLATDKINYVLCTGNVCSQEYVEMLK----NITKNVYIVSGDLD 89 (215)
T ss_dssp HHHHHCTTCCEEEECSCCCCHHHHHHHH----HHCSCEEECCCTTC
T ss_pred HHHHhcCCCCEEEECCCCCCHHHHHHHH----HcCCCEEEecCCCc
Confidence 3344567799999999997655544443 34578888876544
No 140
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=21.73 E-value=1e+02 Score=26.75 Aligned_cols=44 Identities=7% Similarity=0.154 Sum_probs=30.5
Q ss_pred hHHHHHHHHhCCccEEEEeCCCCc------hhhHhhHHHHhhhcCCCEEE
Q 025016 133 LNHVTYLIEQNKAQLVVIAHDVDP------IELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 133 ~n~Vtk~IekkKAkLVVIA~DvsP------~elv~~LpaLC~~~~VPy~~ 176 (259)
.+.+.++|.+.+.++|+|.+=-+| .+-...|-.+|+++|++++.
T Consensus 153 ~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 153 FQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp HHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred HHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 566777777567888888542222 22345688999999998774
No 141
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.50 E-value=2e+02 Score=19.70 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=34.8
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCC-chhhHhhHHHHhh---hcCCCEEEECCccc
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVD-PIELVVWLPALCR---KMEIPYCIVKGKSR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~Dvs-P~elv~~LpaLC~---~~~VPy~~v~sK~e 182 (259)
......+....++.....+||+-.+.. ..+-...+..+.+ ..++|++.+ +...
T Consensus 34 ~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~ 90 (127)
T 2gkg_A 34 ETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPD 90 (127)
T ss_dssp EECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGG
T ss_pred EecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCC
Confidence 344567777888888899999987664 3333333444444 368999988 6544
No 142
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=21.05 E-value=2.8e+02 Score=21.18 Aligned_cols=89 Identities=10% Similarity=0.083 Sum_probs=47.0
Q ss_pred ecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEEeecCcccHHHHH
Q 025016 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKMEFS 209 (259)
Q Consensus 130 ~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAitd~g~eDk~~l~ 209 (259)
.....+...++.+|++..++....+ +..+.+..+ .+.++... +...--......+++... +....+
T Consensus 139 ~~~~~~~~~~l~~grvDa~~~~~~~--------~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~l~~ 204 (229)
T 2y7i_A 139 YDSYLNAFTDLKNNRLEGVFGDVAA--------IGKWLKNNP-DYAIMDER--ASDPDYYGKGLGIAVRKD---NDALLQ 204 (229)
T ss_dssp ESCHHHHHHHHHTTSCSEEEEEHHH--------HHHHHTTCT-TEEECSCC--BCCTTTSCCCBCCEECTT---CHHHHH
T ss_pred cCCHHHHHHHHHcCCcCEEEechHH--------HHHHHHhCC-CeEEeccc--cccccccccceEEEEeCC---CHHHHH
Confidence 4567888999999999987765421 122334443 34443321 110000001233444433 333444
Q ss_pred HHHHHHHHhhhh-hhHhhhhhcCC
Q 025016 210 KILEAIKANFND-KYEELRKKWGG 232 (259)
Q Consensus 210 kLve~i~~~y~d-~y~e~~~~wgg 232 (259)
.+-+.+...-.+ .|++|..+|.|
T Consensus 205 ~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 205 EINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCChHHHHHHHHcC
Confidence 444555555444 78999999987
No 143
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=20.94 E-value=2.3e+02 Score=22.61 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=17.1
Q ss_pred eecchHHHHHHHHhCCccEEEEe
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIA 151 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA 151 (259)
......+...++.+|++..++.-
T Consensus 149 ~~~~~~~~~~~l~~GrvD~~~~d 171 (243)
T 4h5g_A 149 SLTNMGEAVNELQAGKIDAVHMD 171 (243)
T ss_dssp EESCHHHHHHHHHHTSCSEEEEE
T ss_pred EeCCHHHHHHHHHcCCccEEEec
Confidence 34566778889999998887653
No 144
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=20.71 E-value=1e+02 Score=27.06 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=14.7
Q ss_pred CchhhHhhHHHHhhhcCCCEEEECC
Q 025016 155 DPIELVVWLPALCRKMEIPYCIVKG 179 (259)
Q Consensus 155 sP~elv~~LpaLC~~~~VPy~~v~s 179 (259)
||.++ ..|..++++.+|+++|+..
T Consensus 197 s~~~l-~~l~~~ik~~~v~~if~e~ 220 (282)
T 3mfq_A 197 ANSDM-IETVNLIIDHNIKAIFTES 220 (282)
T ss_dssp CHHHH-HHHHHHHHHHTCCEEECBT
T ss_pred CHHHH-HHHHHHHHHcCCCEEEEeC
Confidence 44444 3366777777777777653
No 145
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=20.67 E-value=1.4e+02 Score=24.45 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=29.2
Q ss_pred eecchHHHHHHHHhCC----cc--EEEEeCCC--CchhhHhhHHHHhhhcCCCEEE
Q 025016 129 VKYGLNHVTYLIEQNK----AQ--LVVIAHDV--DPIELVVWLPALCRKMEIPYCI 176 (259)
Q Consensus 129 l~~G~n~Vtk~IekkK----Ak--LVVIA~Dv--sP~elv~~LpaLC~~~~VPy~~ 176 (259)
+-.|+......++... .+ +|++..|. ++.++.. +-..+++.||.+.+
T Consensus 86 l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~-~a~~lk~~gi~v~~ 140 (192)
T 2x5n_A 86 FGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIR-LAKRMKKNNVAIDI 140 (192)
T ss_dssp HHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHH-HHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHH-HHHHHHHCCCEEEE
Confidence 5567777777776632 33 56666665 3555433 55667888888754
No 146
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=20.66 E-value=4.2e+02 Score=24.28 Aligned_cols=103 Identities=10% Similarity=0.059 Sum_probs=64.0
Q ss_pred cccccCChhhHHHHHhhhhcCCcccHHH------HHHHHHHHHHHHHcCCCCccCCCcee---ecchHHHHHHHHhCCcc
Q 025016 76 QFTKTLDKNLASSLFKLLLKYRPEDRAA------KKERLLKRAQAEAEGKTVEAKKPIVV---KYGLNHVTYLIEQNKAQ 146 (259)
Q Consensus 76 qf~~~ld~~~a~~l~kl~~kyrPe~k~e------K~~rLl~lA~kkaaGk~~~~kkp~~l---~~G~n~Vtk~IekkKAk 146 (259)
-.++..+-++|.++.+.+..|.++--+| -...+..+.+. .+ -|... ..+......+|+.+.+.
T Consensus 219 DaN~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~~~~~~~~~l~~~--~~------iPIa~dE~~~~~~~~~~~l~~~~~d 290 (410)
T 3dip_A 219 ELHSLWGTHAAARICNALADYGVLWVEDPIAKMDNIPAVADLRRQ--TR------APICGGENLAGTRRFHEMLCADAID 290 (410)
T ss_dssp ECTTCBCHHHHHHHHHHGGGGTCSEEECCBSCTTCHHHHHHHHHH--HC------CCEEECTTCCSHHHHHHHHHTTCCS
T ss_pred ECCCCCCHHHHHHHHHHHHhcCCCEEECCCCCcccHHHHHHHHhh--CC------CCEEecCCcCCHHHHHHHHHcCCCC
Confidence 3467788899999999998885432111 12222223222 12 22222 23456788899999999
Q ss_pred EEEEeCCC-CchhhHhhHHHHhhhcCCCEEEECCccchhhhh
Q 025016 147 LVVIAHDV-DPIELVVWLPALCRKMEIPYCIVKGKSRLGSIV 187 (259)
Q Consensus 147 LVVIA~Dv-sP~elv~~LpaLC~~~~VPy~~v~sK~eLG~av 187 (259)
+|.+=-.- .-++-...+-++|+.+|||++.-.. .-+|.+.
T Consensus 291 ~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~-s~i~~aa 331 (410)
T 3dip_A 291 FVMLDLTWCGGLSEGRKIAALAETHARPLAPHXT-GPVALMA 331 (410)
T ss_dssp EEEECTTTSSCHHHHHHHHHHHHHTTCCEEECSS-CHHHHHH
T ss_pred eEeecccccCCHHHHHHHHHHHHHcCCEEeeeCc-cHHHHHH
Confidence 88773322 2234445689999999999987655 6566433
No 147
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=20.63 E-value=2.6e+02 Score=20.57 Aligned_cols=54 Identities=9% Similarity=-0.006 Sum_probs=35.3
Q ss_pred eecchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhh---hcCCCEEEECCccc
Q 025016 129 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCR---KMEIPYCIVKGKSR 182 (259)
Q Consensus 129 l~~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~---~~~VPy~~v~sK~e 182 (259)
......+....++.....+||+-.+....+-...+..+-+ ..++|++++.+...
T Consensus 36 ~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~ 92 (154)
T 3gt7_A 36 HVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSD 92 (154)
T ss_dssp EESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCS
T ss_pred EeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCC
Confidence 3455677888888899999999876544333333333433 35799988775544
No 148
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=20.61 E-value=69 Score=23.86 Aligned_cols=41 Identities=12% Similarity=0.006 Sum_probs=26.4
Q ss_pred CccEEEEeCCCCc----hhhHhhHHHHhhh---cCCCEEEECCccchh
Q 025016 144 KAQLVVIAHDVDP----IELVVWLPALCRK---MEIPYCIVKGKSRLG 184 (259)
Q Consensus 144 KAkLVVIA~DvsP----~elv~~LpaLC~~---~~VPy~~v~sK~eLG 184 (259)
.+..+|+.-|++. .+...++..+... .++|++++.+|.+|-
T Consensus 74 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 121 (171)
T 1upt_A 74 NTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 121 (171)
T ss_dssp TCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence 3566777777653 2233444444443 689999999998874
No 149
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=20.57 E-value=59 Score=25.28 Aligned_cols=41 Identities=22% Similarity=0.142 Sum_probs=26.9
Q ss_pred CccEEEEeCCCCch----hhHhhHHHHhhh---cCCCEEEECCccchh
Q 025016 144 KAQLVVIAHDVDPI----ELVVWLPALCRK---MEIPYCIVKGKSRLG 184 (259)
Q Consensus 144 KAkLVVIA~DvsP~----elv~~LpaLC~~---~~VPy~~v~sK~eLG 184 (259)
.+..+|+.-|++.. .+..++..+... .++|++++.+|.+|-
T Consensus 90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137 (188)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence 45667777777532 233445555443 689999999999874
No 150
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=20.53 E-value=1.1e+02 Score=28.52 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=28.8
Q ss_pred ccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchh
Q 025016 145 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLG 184 (259)
Q Consensus 145 AkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG 184 (259)
+..+|+--|++..+....+...+.+.++|+++|.+|.+|-
T Consensus 114 aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 114 ADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp CSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred CCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 5555666677665555556677777899999999998764
No 151
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=20.39 E-value=2.2e+02 Score=19.64 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=34.0
Q ss_pred cchHHHHHHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccc
Q 025016 131 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSR 182 (259)
Q Consensus 131 ~G~n~Vtk~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~e 182 (259)
....+....++.....+||+-.+....+-...+..+.+...+|++++.+...
T Consensus 33 ~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~ 84 (122)
T 1zgz_A 33 ASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSD 84 (122)
T ss_dssp SSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSCC
T ss_pred cCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCCC
Confidence 3446677788888899999987664433334445555556788887765443
No 152
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=20.20 E-value=1.5e+02 Score=25.00 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=29.0
Q ss_pred eeecc----hHHHHHHHHhCC--ccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEEC
Q 025016 128 VVKYG----LNHVTYLIEQNK--AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVK 178 (259)
Q Consensus 128 ~l~~G----~n~Vtk~IekkK--AkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~ 178 (259)
++.+| ...+..+++++. ..+|.+-.|-+.. .....|+++|||++.+.
T Consensus 5 vl~Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~~~~----~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 5 VLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADA----FGLERARQAGIATHTLI 57 (212)
T ss_dssp EEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCTTC----HHHHHHHHTTCEEEECC
T ss_pred EEEECCcHHHHHHHHHHHcCCCCceEEEEEeCCCch----HHHHHHHHcCCcEEEeC
Confidence 45566 455666666774 4555555443221 13578999999998754
No 153
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=20.17 E-value=89 Score=25.65 Aligned_cols=17 Identities=47% Similarity=0.470 Sum_probs=10.1
Q ss_pred HHHHhCCccEEEEeCCC
Q 025016 138 YLIEQNKAQLVVIAHDV 154 (259)
Q Consensus 138 k~IekkKAkLVVIA~Dv 154 (259)
+.++..++.+||++.|+
T Consensus 46 ~~~~~~~~d~vi~~GDl 62 (208)
T 1su1_A 46 ELFAQSGAQWLVILGDV 62 (208)
T ss_dssp HHHHHHTCSEEEECSCC
T ss_pred HHHHhcCCCEEEECCCc
Confidence 33433456677777776
No 154
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=20.13 E-value=69 Score=24.79 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=26.5
Q ss_pred ccEEEEeCCCCc----hhhHhhHHHHhhh-----cCCCEEEECCccchh
Q 025016 145 AQLVVIAHDVDP----IELVVWLPALCRK-----MEIPYCIVKGKSRLG 184 (259)
Q Consensus 145 AkLVVIA~DvsP----~elv~~LpaLC~~-----~~VPy~~v~sK~eLG 184 (259)
+..||+.-|++. .++..++..+... .++|++++.+|.+|-
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 566777777653 2233445555544 589999999999884
No 155
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=20.13 E-value=86 Score=23.89 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=26.5
Q ss_pred CccEEEEeCCCCch--hhHhhHHHHhhhcCCCEEEECCccch
Q 025016 144 KAQLVVIAHDVDPI--ELVVWLPALCRKMEIPYCIVKGKSRL 183 (259)
Q Consensus 144 KAkLVVIA~DvsP~--elv~~LpaLC~~~~VPy~~v~sK~eL 183 (259)
.+.+|++..|++.. .....+.......++|++++.+|.+|
T Consensus 104 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 104 SLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK 145 (195)
T ss_dssp TEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence 35667776675431 22233455667779999999999887
No 156
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=20.11 E-value=1.7e+02 Score=23.11 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=35.1
Q ss_pred HHHHhCCccEEEEeCCCCchhhHhhHHHHhhhcCCCEEEECCccchhhhhcCCceEEEEE
Q 025016 138 YLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSIVHKKTASVLCL 197 (259)
Q Consensus 138 k~IekkKAkLVVIA~DvsP~elv~~LpaLC~~~~VPy~~v~sK~eLG~avGkk~~a~VAi 197 (259)
.....|..+.|+=+.| +.++.. |...++..|+|++.|.+.-.-- +--.++||+||
T Consensus 42 ~W~~~G~~Kvvlk~~~--e~el~~-L~~~a~~~gl~~~~I~DAG~Te--i~pgt~Tvlai 96 (123)
T 1rzw_A 42 KWLDEGQKKVVLKVKS--LEELLG-IKHKAESLGLVTGLVQDAGLTE--VPPGTITAVVI 96 (123)
T ss_dssp HTGGGCSSEEEEECSC--HHHHHH-HHHHHHHTTCCEEEECCTTCCS--CSTTSCEEEEE
T ss_pred HHHHCCCcEEEEecCC--HHHHHH-HHHHHHHCCCCEEEEECCCCcc--cCCCCEEEEEe
Confidence 3445677888887776 444544 7778888999998886533211 11124678886
No 157
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=20.07 E-value=81 Score=23.71 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=24.4
Q ss_pred ccEEEEeCCCCc---hhhHhhHHHHhhhcCCCEEEECCccchh
Q 025016 145 AQLVVIAHDVDP---IELVVWLPALCRKMEIPYCIVKGKSRLG 184 (259)
Q Consensus 145 AkLVVIA~DvsP---~elv~~LpaLC~~~~VPy~~v~sK~eLG 184 (259)
+..+|+.-|++. .+....+. .+...++|++++.+|.+|-
T Consensus 79 ~d~~i~v~d~~~~~~~~~~~~l~-~~~~~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 79 TDIVILVVAADDGVMPQTVEAIN-HAKAANVPIIVAINKMDKP 120 (178)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHH-HHGGGSCCEEEEEETTTSS
T ss_pred CCEEEEEEECCCCCcHHHHHHHH-HHHhCCCCEEEEEECccCC
Confidence 455566666654 23333333 3345689999999998874
No 158
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=20.04 E-value=2.9e+02 Score=20.99 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=30.8
Q ss_pred HHHhCCcc-EEEEeCCCCchhhHhhHHHHhhhcCC--CEEEECC-ccchhhhhcCC
Q 025016 139 LIEQNKAQ-LVVIAHDVDPIELVVWLPALCRKMEI--PYCIVKG-KSRLGSIVHKK 190 (259)
Q Consensus 139 ~IekkKAk-LVVIA~DvsP~elv~~LpaLC~~~~V--Py~~v~s-K~eLG~avGkk 190 (259)
..+...+. +|.|+.| ++.. +.+.++++++ +|-++.+ ..++.++.|..
T Consensus 65 ~~~~~~v~~vv~Is~d-~~~~----~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 115 (162)
T 1tp9_A 65 ELKSKGVTEILCISVN-DPFV----MKAWAKSYPENKHVKFLADGSATYTHALGLE 115 (162)
T ss_dssp HHHHTTCCCEEEEESS-CHHH----HHHHHHTCTTCSSEEEEECTTSHHHHHTTCE
T ss_pred HHHHCCCCEEEEEECC-CHHH----HHHHHHhcCCCCCeEEEECCCchHHHHcCcc
Confidence 33445677 8888887 3422 4567888888 7876654 45677777653
Done!