BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>025018
MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ
NSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTT
ATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSVI
GAPLAAILSSPLKLLMPSPVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGWL
SRHEETSEENKSSNQLIAM

High Scoring Gene Products

Symbol, full name Information P value
AT1G01225 protein from Arabidopsis thaliana 4.1e-88
AT4G00905 protein from Arabidopsis thaliana 4.5e-82
AT3G02700 protein from Arabidopsis thaliana 8.6e-56
AT5G06370 protein from Arabidopsis thaliana 1.3e-54
AT5G16360 protein from Arabidopsis thaliana 1.6e-49
AT5G16330 protein from Arabidopsis thaliana 3.7e-44

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  025018
        (259 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006091 - symbol:AT1G01225 species:3702 "Ara...   880  4.1e-88   1
TAIR|locus:504955372 - symbol:AT4G00905 "AT4G00905" speci...   823  4.5e-82   1
TAIR|locus:2076964 - symbol:AT3G02700 "AT3G02700" species...   575  8.6e-56   1
TAIR|locus:2164260 - symbol:AT5G06370 "AT5G06370" species...   564  1.3e-54   1
TAIR|locus:2171387 - symbol:AT5G16360 "AT5G16360" species...   444  1.6e-49   2
TAIR|locus:2171347 - symbol:AT5G16330 "AT5G16330" species...   429  3.7e-44   2


>TAIR|locus:505006091 [details] [associations]
            symbol:AT1G01225 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0010089 "xylem development"
            evidence=RCA] [GO:0044036 "cell wall macromolecule metabolic
            process" evidence=RCA] EMBL:CP002684 GenomeReviews:CT485782_GR
            InterPro:IPR007053 Pfam:PF04970 EMBL:BT024776 IPI:IPI00522787
            RefSeq:NP_563621.1 UniGene:At.42658 ProteinModelPortal:Q29PY0
            SMR:Q29PY0 PaxDb:Q29PY0 PRIDE:Q29PY0 EnsemblPlants:AT1G01225.1
            GeneID:839358 KEGG:ath:AT1G01225 TAIR:At1g01225 eggNOG:NOG287992
            HOGENOM:HOG000241343 InParanoid:Q29PY0 OMA:VHRAMYL PhylomeDB:Q29PY0
            ProtClustDB:CLSN2686151 Genevestigator:Q29PY0 Uniprot:Q29PY0
        Length = 260

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 168/256 (65%), Positives = 198/256 (77%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
             MGLLTN++ER E+K GDHIYTYRA+FAYSHHGI+VGGSKVVHFRPE N +  + TSS + 
Sbjct:     1 MGLLTNKIEREELKPGDHIYTYRAIFAYSHHGIFVGGSKVVHFRPEHNPM-DSSTSSISS 59

Query:    61 NSILPSSCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTT 120
             +S     C IFPDCGFRQP+SGV+LSCLDCFL NGSLYCFEYGV+PSVFL KVRGGTCTT
Sbjct:    60 SSS-EDICSIFPDCGFRQPDSGVVLSCLDCFLKNGSLYCFEYGVSPSVFLTKVRGGTCTT 118

Query:   121 ATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRXXXXXXXXXXXXX 180
             A SD  ++VIHRAMYLLQNGFGNY++F+NNCEDFALYC+TGLLI+D+             
Sbjct:   119 AQSDTTDSVIHRAMYLLQNGFGNYDIFKNNCEDFALYCKTGLLIMDKLGVGRSGQASSIV 178

Query:   181 XXPLAAIXXXXXXXXXXXXVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLG-- 238
               PLAA+            +G+ATVTAGMYCMSRYATDIGVRSDVIKV+VEDLA+NL   
Sbjct:   179 GAPLAALLSSPFKLLIPSPIGVATVTAGMYCMSRYATDIGVRSDVIKVSVEDLALNLDVK 238

Query:   239 WLSRHEETSEENKSSN 254
              + + EE  E+ +  +
Sbjct:   239 TIEQGEEEEEDEEEDS 254


>TAIR|locus:504955372 [details] [associations]
            symbol:AT4G00905 "AT4G00905" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161472
            InterPro:IPR007053 Pfam:PF04970 HOGENOM:HOG000241343
            ProtClustDB:CLSN2686151 IPI:IPI00524982 RefSeq:NP_680550.1
            UniGene:At.45468 ProteinModelPortal:Q3EAE0 SMR:Q3EAE0
            EnsemblPlants:AT4G00905.1 GeneID:827986 KEGG:ath:AT4G00905
            TAIR:At4g00905 eggNOG:NOG259933 InParanoid:Q3EAE0 OMA:DSSEAPC
            PhylomeDB:Q3EAE0 Genevestigator:Q3EAE0 Uniprot:Q3EAE0
        Length = 263

 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 159/246 (64%), Positives = 189/246 (76%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVG--AETSSE 58
             MG+LTN+VER+E+K GDHIYTYRAVFAYSHHG++VGG KVVHF+PE +LI    A +SS 
Sbjct:     1 MGVLTNKVERDELKPGDHIYTYRAVFAYSHHGVFVGGCKVVHFKPEHSLISPTLASSSSS 60

Query:    59 TQNSILP---SS---CLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAK 112
             + +S+     SS   C  +PDCG+++P SGV+LSCLDCFL  GSLY F+YGV+ S+FL +
Sbjct:    61 SSSSVSEVNDSSEAPCPTYPDCGYKRPKSGVVLSCLDCFLKKGSLYRFDYGVSSSIFLTR 120

Query:   113 VRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRXXXXX 172
              RGGTCTTA SDP +TVIHRAM+LLQNGFGNYNVFQNNCEDFALYC+TGLLI+D+     
Sbjct:   121 FRGGTCTTAPSDPLQTVIHRAMHLLQNGFGNYNVFQNNCEDFALYCKTGLLILDKNGVGR 180

Query:   173 XXXXXXXXXXPLAAIXXXXXXXXXXXXVGMATVTAGMYCMSRYATDIGVRSDVIKVAVED 232
                       PLAA+            VG+ATVTAGMYCMSRYATDIGVR+DVIKV VED
Sbjct:   181 SGQASSIIGAPLAALLSSPLTLLIPNPVGVATVTAGMYCMSRYATDIGVRNDVIKVPVED 240

Query:   233 LAVNLG 238
             LA+NLG
Sbjct:   241 LALNLG 246


>TAIR|locus:2076964 [details] [associations]
            symbol:AT3G02700 "AT3G02700" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:AC021640 EMBL:CP002686
            InterPro:IPR007053 Pfam:PF04970 UniGene:At.18824 UniGene:At.75116
            ProtClustDB:CLSN2686151 EMBL:BT006225 EMBL:AK117161 IPI:IPI00548769
            RefSeq:NP_566181.1 ProteinModelPortal:Q9M872 SMR:Q9M872
            EnsemblPlants:AT3G02700.1 GeneID:820843 KEGG:ath:AT3G02700
            TAIR:At3g02700 InParanoid:Q9M872 OMA:HFTRGAG PhylomeDB:Q9M872
            Genevestigator:Q9M872 Uniprot:Q9M872
        Length = 252

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 122/262 (46%), Positives = 158/262 (60%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSET- 59
             MG L+N++ R+++K GDHIY++R  + Y+HHGIYVG  +V HF   R    G ET + T 
Sbjct:     1 MGFLSNKISRDDVKPGDHIYSWRQAYIYAHHGIYVGNGQVNHFT--RG--DGQETGTGTF 56

Query:    60 -QNSILPSS-------CLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLA 111
               N I+ SS       C   PDCG R    GVI SCL+CFL  G LY FEY V+P++FLA
Sbjct:    57 LDNIIVSSSHNHGDNPC---PDCGDRSNLGGVISSCLECFLAGGDLYVFEYSVSPAIFLA 113

Query:   112 KVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRXXXX 171
             K RGG CT A+SDPPE VI+RA +LLQNGFG YNVF+NNCEDFA+YC+TGLL+ +     
Sbjct:   114 KPRGGVCTIASSDPPEEVIYRANFLLQNGFGVYNVFKNNCEDFAIYCKTGLLVANTDVGR 173

Query:   172 XXXXXXXXXXXPLAAIXXXXXXXXXXXXVGMATVTAGMYCMSRYATDIGVRSDVIKVAVE 231
                          A++             G+A    GMYC SR  +DIG+R DV KV VE
Sbjct:   174 SGQAASIVAA---ASVLLSSPLRFVAGFGGLAVAGYGMYCTSRLVSDIGMRWDVSKVPVE 230

Query:   232 DLAVNLGWLSRHEETSEENKSS 253
              L  ++  +S  E   E+ K++
Sbjct:   231 RLVADVACMSDMEAKPEDEKTT 252


>TAIR|locus:2164260 [details] [associations]
            symbol:AT5G06370 "AT5G06370" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0006635 "fatty acid
            beta-oxidation" evidence=RCA] [GO:0007165 "signal transduction"
            evidence=RCA] [GO:0009755 "hormone-mediated signaling pathway"
            evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR
            InterPro:IPR007053 Pfam:PF04970 HOGENOM:HOG000241343
            ProtClustDB:CLSN2686151 EMBL:AF380637 EMBL:AY054134 EMBL:AK226465
            IPI:IPI00538028 RefSeq:NP_568167.1 UniGene:At.7283 UniGene:At.74071
            ProteinModelPortal:Q93V51 SMR:Q93V51 IntAct:Q93V51 STRING:Q93V51
            PaxDb:Q93V51 PRIDE:Q93V51 EnsemblPlants:AT5G06370.1 GeneID:830525
            KEGG:ath:AT5G06370 TAIR:At5g06370 eggNOG:NOG324094
            InParanoid:Q93V51 OMA:LNCFLAG PhylomeDB:Q93V51
            Genevestigator:Q93V51 Uniprot:Q93V51
        Length = 259

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 114/239 (47%), Positives = 145/239 (60%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSET- 59
             MGLL+NR++R+ +K GDHIY++R  + Y+HHGIYVG  +V+HF   R   VG  T  +  
Sbjct:     1 MGLLSNRIDRSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFT-RRGQEVGTGTVLDLI 59

Query:    60 QNSILPS-SCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTC 118
               S  PS +    P C       GV+ SCL+CFL  G LY FEY V  + FL K RGGTC
Sbjct:    60 LVSSGPSRNHTHCPTCVPPNEGHGVVSSCLNCFLAGGVLYRFEYSVNAAHFLVKARGGTC 119

Query:   119 TTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRXXXXXXXXXXX 178
             T A +DP E V+HRA +LLQNGFG Y+VF+NNCEDFA+YC+T LL+++            
Sbjct:   120 TLAVADPNEIVVHRAKHLLQNGFGCYDVFKNNCEDFAIYCKTALLVLEGRTMGQSGQAVS 179

Query:   179 XXXXPLAAIXXXXXXXXXXXXVGMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNL 237
                 P+AA+             GMA    G+YC SRYATDIG+R+DV KV  EDL   L
Sbjct:   180 IIGGPIAAVLSTPMRLLTTNVYGMAATAIGVYCASRYATDIGMRADVAKVEAEDLTRRL 238


>TAIR|locus:2171387 [details] [associations]
            symbol:AT5G16360 "AT5G16360" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB005242
            InterPro:IPR007053 Pfam:PF04970 HOGENOM:HOG000241343
            ProtClustDB:CLSN2686151 EMBL:BT002837 EMBL:BT004369 IPI:IPI00535688
            RefSeq:NP_197140.1 UniGene:At.31683 UniGene:At.67082
            ProteinModelPortal:Q9FFE7 SMR:Q9FFE7 PaxDb:Q9FFE7 PRIDE:Q9FFE7
            EnsemblPlants:AT5G16360.1 GeneID:831497 KEGG:ath:AT5G16360
            TAIR:At5g16360 eggNOG:NOG291165 InParanoid:Q9FFE7 OMA:ISSTVKY
            PhylomeDB:Q9FFE7 Genevestigator:Q9FFE7 Uniprot:Q9FFE7
        Length = 283

 Score = 444 (161.4 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 87/173 (50%), Positives = 117/173 (67%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQ 60
             MGL ++++ R+++K GDHIY++R  + YSHHG+YVG  KV+HF     L  G  T  +  
Sbjct:     1 MGLFSHKISRDDLKPGDHIYSWRNAYIYSHHGVYVGDEKVIHFTRGGGLEFGTGTVLDKI 60

Query:    61 NSI-LPS------SCLIFPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKV 113
               I +P+       C+   DCG +    GVI SCLDCFL  G+L+ FEY  +PS+FLAK 
Sbjct:    61 IDISIPNHGRRDKKCI---DCGDQSNLGGVISSCLDCFLAGGNLHLFEYSASPSIFLAK- 116

Query:   114 RGGTCTTATSDPPETVIHRAMYLL-QNGFGNYNVFQNNCEDFALYCRTGLLIV 165
             RGGTCT A+SDP + VI RA +LL QNGFG Y++  NNCEDFA+YC+TGL ++
Sbjct:   117 RGGTCTIASSDPCDEVISRAKFLLLQNGFGEYDLLDNNCEDFAIYCKTGLFVL 169

 Score = 89 (36.4 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query:   201 GMATVTAGMYCMSRYATDIGVRSDVIKVAVEDLAVNLGWLSRHEETSEENKSSN 254
             G+A    G YC+ R   DIGVR D  KV+VE+L   +G     ++   E K SN
Sbjct:   234 GLALAEYGNYCIGRLFYDIGVRKDACKVSVEELVAFVG----AKQNILEGKKSN 283


>TAIR|locus:2171347 [details] [associations]
            symbol:AT5G16330 "AT5G16330" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB005242
            InterPro:IPR007053 Pfam:PF04970 HOGENOM:HOG000241343
            ProtClustDB:CLSN2686151 IPI:IPI00538367 RefSeq:NP_197137.1
            UniGene:At.54864 ProteinModelPortal:Q9FFF0 SMR:Q9FFF0
            EnsemblPlants:AT5G16330.1 GeneID:831494 KEGG:ath:AT5G16330
            TAIR:At5g16330 eggNOG:NOG272845 InParanoid:Q9FFF0 OMA:LENNCED
            PhylomeDB:Q9FFF0 Genevestigator:Q9FFF0 Uniprot:Q9FFF0
        Length = 242

 Score = 429 (156.1 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 82/168 (48%), Positives = 114/168 (67%)

Query:     1 MGLLTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETS-SET 59
             +G ++N++ R+++K GDHIY++R  + YSHHGIY+G  KV+HF     L  G  T   + 
Sbjct:     9 IGFISNQISRDKLKPGDHIYSWRNAYIYSHHGIYIGDEKVIHFTCGGGLETGTGTFLDKI 68

Query:    60 QNSILPSSCLIFP--DCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGT 117
               S++P+     P  +C  +    GVI SCLDCFL  G++Y FEY V+P+ F+AK R GT
Sbjct:    69 VVSVIPNHKGDNPCSNCEEQLNLEGVISSCLDCFLAGGNIYLFEYSVSPAAFIAKPRRGT 128

Query:   118 CTTATSDPPETVIHRAMYLL-QNGFGNYNVFQNNCEDFALYCRTGLLI 164
             CT A SDP + VI RA YLL +NGFG+Y+  +NNCEDFA+YC+T LL+
Sbjct:   129 CTIAPSDPCDEVISRAKYLLLRNGFGDYHALENNCEDFAIYCKTSLLV 176

 Score = 53 (23.7 bits), Expect = 3.7e-44, Sum P(2) = 3.7e-44
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query:   218 DIGVRSDVIKVAVEDL 233
             DIG+R D IKV VE L
Sbjct:   213 DIGMRKDAIKVPVESL 228


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      259       232   0.00085  113 3  11 22  0.38    33
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.19u 0.10s 17.29t   Elapsed:  00:00:01
  Total cpu time:  17.19u 0.10s 17.29t   Elapsed:  00:00:01
  Start:  Sat May 11 12:02:32 2013   End:  Sat May 11 12:02:33 2013

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