BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025018
         (259 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
 pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
          Length = 296

 Score = 31.2 bits (69), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 104 VAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYN 145
           +   +F  +V+ G  +     PPET +    Y +Q  FG+YN
Sbjct: 96  ITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYN 137


>pdb|2KYT|A Chain A, Solution Struture Of The H-Rev107 N-Terminal Domain
          Length = 125

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 7  RVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSS 57
          R    E K GD I  +R    Y H  IYVG   VVH  P    + GA  +S
Sbjct: 2  RAPIPEPKPGDLIEIFRPF--YRHWAIYVGDGYVVHLAPPSE-VAGAGAAS 49


>pdb|4DOT|A Chain A, Crystal Structure Of Human Hrasls3
          Length = 140

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 12 EIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSS 57
          E K GD I  +R    Y H  IYVG   VVH  P    + GA  +S
Sbjct: 7  EPKPGDLIEIFRPF--YRHWAIYVGDGYVVHLAPPSE-VAGAGAAS 49


>pdb|4FA0|A Chain A, Crystal Structure Of Human Adpla To 2.65 A Resolution
          Length = 137

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 12 EIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSS 57
          E K GD I  +R    Y H  IYVG   VVH  P    + GA  +S
Sbjct: 10 EPKPGDLIEIFRPF--YRHWAIYVGDGYVVHLAPPSE-VAGAGAAS 52


>pdb|2LKT|A Chain A, Solution Structure Of N-Terminal Domain Of Human Tig3 In 2
           M Urea
          Length = 125

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 33/151 (21%)

Query: 11  NEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLI 70
            E K GD I  +R    Y H  +Y+G   V+H  P      GA +SS    S+L +S  +
Sbjct: 6   QEPKPGDLIEIFR--LGYEHWALYIGDGYVIHLAPPSEY-PGAGSSSVF--SVLSNSAEV 60

Query: 71  FPDCGFRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVI 130
                 R+    V+  C  C+  N SL   EY                      P E +I
Sbjct: 61  -----KRERLEDVVGGC--CYRVNNSL-DHEY-------------------QPRPVEVII 93

Query: 131 HRAMYLLQNGFGNYNVFQNNCEDFALYCRTG 161
             A  ++      Y++   NCE F    R G
Sbjct: 94  SSAKEMVGQKM-KYSIVSRNCEHFVTQLRYG 123


>pdb|4DPZ|X Chain X, Crystal Structure Of Human Hrasls2
          Length = 110

 Score = 28.5 bits (62), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 10 RNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSE 58
          R   + GD I   R  F Y+H  IYVG   VVH  P   L   A    E
Sbjct: 4  RPRPRLGDLIEISR--FGYAHWAIYVGDGYVVHLAPASALTNKAIVKKE 50


>pdb|2INY|A Chain A, Nanoporous Crystals Of Chicken Embryo Lethal Orphan (celo)
           Adenovirus Major Coat Protein, Hexon
          Length = 942

 Score = 28.5 bits (62), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 59  TQNSILPSSCLIFPDCGFRQPNSGVILSCLDCFLG 93
           TQ    P + L+ P   ++Q NSG + +C   ++G
Sbjct: 258 TQTLSYPDTVLVTPPTAYQQVNSGTMRACRPNYIG 292


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,811,713
Number of Sequences: 62578
Number of extensions: 254203
Number of successful extensions: 471
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 9
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)