BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025018
         (259 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9JI60|LRAT_MOUSE Lecithin retinol acyltransferase OS=Mus musculus GN=Lrat PE=1 SV=1
          Length = 231

 Score = 40.4 bits (93), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 43/199 (21%)

Query: 16  GDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCG 75
           GD +   R  F   H+GIY+G ++V H  P+  +++      E    ++ +  L+     
Sbjct: 48  GDVLEVSRTHFI--HYGIYLGENRVAHLMPD--ILLALTNDKERTQKVVSNKRLLL---- 99

Query: 76  FRQPNSGVILSCLDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMY 135
                 GVI  C    +   ++  F YG      L     GT     S   E V  RA  
Sbjct: 100 ------GVI--CKVASIRVDTVEDFAYGAD---ILVNHLDGTLKKK-SLLNEEVARRAEQ 147

Query: 136 LLQNGFGNYNVFQNNCEDFALYCRTG---------------LLIVDRQGVGSSGQASSVI 180
             Q G   Y++  NNCE F  YCR G               ++I D++    S  AS+V+
Sbjct: 148 --QLGLTPYSLLWNNCEHFVTYCRYGSRISPQAEKFYDTVKIIIRDQR----SSLASAVL 201

Query: 181 GAPLAAILSSPLKLLMPSP 199
           G  LA+I+ + L   M  P
Sbjct: 202 G--LASIVYTGLASYMTLP 218


>sp|O95237|LRAT_HUMAN Lecithin retinol acyltransferase OS=Homo sapiens GN=LRAT PE=1 SV=2
          Length = 230

 Score = 40.0 bits (92), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 20/133 (15%)

Query: 29  SHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSCL 88
           +H+GIY+G ++V H  P+  L+   +    TQ  ++ +  LI           GVI+   
Sbjct: 59  THYGIYLGDNRVAHMMPDI-LLALTDDMGRTQK-VVSNKRLIL----------GVIVKVA 106

Query: 89  DCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQ 148
              +   ++  F YG   ++ +  +       A  +  E V  RA  LL  GF  Y++  
Sbjct: 107 SIRVD--TVEDFAYGA--NILVNHLDESLQKKALLN--EEVARRAEKLL--GFTPYSLLW 158

Query: 149 NNCEDFALYCRTG 161
           NNCE F  YCR G
Sbjct: 159 NNCEHFVTYCRYG 171


>sp|Q9BGL2|LRAT_BOVIN Lecithin retinol acyltransferase OS=Bos taurus GN=LRAT PE=1 SV=1
          Length = 230

 Score = 36.6 bits (83), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 24/135 (17%)

Query: 29  SHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSCL 88
           +H+GIY+G ++V H  P+  L+   +    TQ  +                N  +IL  +
Sbjct: 59  THYGIYLGDNRVAHMMPD-ILLALTDDKGRTQKVV---------------SNKRLILGVI 102

Query: 89  D--CFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNV 146
                +   ++  F YG    + +  +       A  +  E V  RA  LL  G   Y++
Sbjct: 103 GRVASIRVDTVEDFAYGA--EILVNHLDRSLKKKALLN--EEVAQRAEKLL--GITPYSL 156

Query: 147 FQNNCEDFALYCRTG 161
             NNCE F  YCR G
Sbjct: 157 LWNNCEHFVTYCRYG 171


>sp|A7IAP7|IF2P_METB6 Probable translation initiation factor IF-2 OS=Methanoregula boonei
           (strain 6A8) GN=infB PE=3 SV=1
          Length = 591

 Score = 35.4 bits (80), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 17  DHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGF 76
           D +YT   VF  S   IY    + V +R E+  I      ++ ++ ++P+   + PDC F
Sbjct: 421 DPLYTQVKVF--SGQVIYQLIDQYVAWRDEQKRIA---EKAQFEHVMMPAKIRLLPDCVF 475

Query: 77  RQPNSGVI 84
           RQ N  V+
Sbjct: 476 RQSNPAVV 483


>sp|P53817|HRSL3_RAT HRAS-like suppressor 3 OS=Rattus norvegicus GN=Pla2g16 PE=2 SV=2
          Length = 160

 Score = 31.6 bits (70), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 12 EIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRP 45
          E K GD I  +R +  YSH  IYVG   V+H  P
Sbjct: 5  EPKPGDLIEIFRPM--YSHWAIYVGDGYVIHLAP 36


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,167,831
Number of Sequences: 539616
Number of extensions: 4052376
Number of successful extensions: 8624
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8619
Number of HSP's gapped (non-prelim): 9
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)