Query 025018
Match_columns 259
No_of_seqs 193 out of 1004
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 18:34:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lkt_A Retinoic acid receptor 100.0 6E-36 2.1E-40 242.5 10.5 122 8-162 3-124 (125)
2 4dot_A Group XVI phospholipase 100.0 9E-33 3.1E-37 230.4 10.4 131 8-179 3-133 (140)
3 4dpz_X HRAS-like suppressor 2; 100.0 9.7E-32 3.3E-36 223.4 10.4 128 9-177 4-131 (137)
4 2k1g_A Lipoprotein SPR; soluti 98.7 1.9E-08 6.4E-13 82.9 5.5 42 4-46 59-100 (135)
5 2jyx_A Lipoprotein SPR; soluti 98.5 1.6E-07 5.3E-12 76.8 6.0 42 4-46 59-100 (136)
6 2if6_A Hypothetical protein YI 98.4 9.2E-07 3.2E-11 75.1 9.2 37 9-45 1-51 (186)
7 3pbi_A Invasion protein; pepti 98.4 4.3E-07 1.5E-11 80.1 5.9 42 4-47 150-191 (214)
8 3gt2_A Putative uncharacterize 98.3 3.4E-07 1.2E-11 75.2 4.1 38 4-43 81-118 (142)
9 3ne0_A Resuscitation promoting 98.3 4.2E-07 1.4E-11 80.2 4.7 42 4-47 150-191 (214)
10 3kw0_A Cysteine peptidase; str 98.2 4.8E-06 1.6E-10 72.9 9.3 51 10-94 37-101 (214)
11 2hbw_A NLP/P60 protein; NLP/P6 98.1 2.2E-06 7.5E-11 76.3 4.9 42 4-46 152-193 (235)
12 3h41_A NLP/P60 family protein; 98.1 2.7E-06 9.3E-11 77.9 5.5 44 4-47 241-286 (311)
13 3npf_A Putative dipeptidyl-pep 98.0 5.6E-06 1.9E-10 75.1 5.8 42 4-45 208-258 (306)
14 4hpe_A Putative cell WALL hydr 97.9 8E-06 2.7E-10 75.1 4.4 40 4-43 240-282 (308)
15 4fdy_A Similar to lipoprotein, 97.8 1.3E-05 4.3E-10 74.2 4.9 39 5-43 245-286 (313)
16 2wp7_A PPPDE peptidase domain- 95.4 0.01 3.4E-07 50.5 3.6 58 125-192 80-140 (168)
17 3m1u_A Putative gamma-D-glutam 94.3 0.0038 1.3E-07 60.0 -2.0 42 4-45 328-381 (434)
18 2p1g_A Putative xylanase; stru 90.6 0.46 1.6E-05 42.6 6.4 37 11-47 170-211 (249)
19 2im9_A Hypothetical protein; s 64.5 7.1 0.00024 36.3 4.8 37 11-47 239-288 (333)
20 4h4j_A Hypothetical protein; P 48.8 17 0.00059 32.0 4.4 38 11-48 169-211 (240)
21 1o9y_A HRCQ2; secretory protei 41.8 30 0.001 25.2 4.1 30 11-42 34-63 (84)
22 4diq_A Lysine-specific demethy 37.0 16 0.00054 35.6 2.4 34 10-46 229-262 (489)
23 1vrb_A Putative asparaginyl hy 36.6 15 0.00051 33.5 2.1 33 11-46 220-252 (342)
24 1o6a_A Putative flagellar moto 34.8 34 0.0012 25.6 3.5 31 11-43 38-68 (96)
25 3uep_A YSCQ-C, type III secret 34.2 39 0.0013 25.4 3.8 30 11-42 38-67 (96)
26 2xdv_A MYC-induced nuclear ant 26.3 30 0.001 32.9 2.3 34 10-46 200-234 (442)
27 2l34_A TYRO protein tyrosine k 25.1 28 0.00097 21.6 1.3 19 197-215 15-33 (33)
28 3a2z_A Bifunctional glutathion 23.8 61 0.0021 27.7 3.6 27 10-36 109-137 (197)
29 3vpi_A Type VI secretion expor 20.7 50 0.0017 27.6 2.3 30 9-38 90-119 (174)
30 3aqy_A Beta-1,3-glucan-binding 20.2 44 0.0015 25.8 1.8 19 7-25 63-81 (106)
31 2hc8_A PACS, cation-transporti 20.1 78 0.0027 24.1 3.2 19 7-25 24-42 (113)
No 1
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=100.00 E-value=6e-36 Score=242.47 Aligned_cols=122 Identities=24% Similarity=0.360 Sum_probs=94.5
Q ss_pred cCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCCCccccccccccccccCCCCcccCCCCcCccCCCCceEEcc
Q 025018 8 VERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSC 87 (259)
Q Consensus 8 v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~cg~~~~~~gVv~s~ 87 (259)
.+.+++||||||+++|.+ |+|||||+|+|+|||+.+..+....+..+.. ........|+.++
T Consensus 3 ~~~~ep~pGDlI~~~r~~--Y~H~gIYvGdg~ViH~~~~~~~~~~~~~~~~----------------~~~~~~~~V~~~~ 64 (125)
T 2lkt_A 3 SPHQEPKPGDLIEIFRLG--YEHWALYIGDGYVIHLAPPSEYPGAGSSSVF----------------SVLSNSAEVKRER 64 (125)
T ss_dssp SSSCCCCTTCEEEEECSS--SCEEEEEEETTEEEEEECSBCCSCCCBTTBS----------------SCCBCCEEEEEEE
T ss_pred CCCCCCCCCCEEEEeCCC--ccEEEEEeCCCeEEEEcccccccccccccee----------------ccccCCceEEEEE
Confidence 367889999999999988 8999999999999999987653221111111 1112234688899
Q ss_pred chhhcCCCceEEEeeccCcceeeehccCCcccccCCCCHHHHHHHHHHHhhcCCcccccccCchhHHHHHhhhCc
Q 025018 88 LDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGL 162 (259)
Q Consensus 88 L~~Fl~G~~l~~f~Y~vs~~~flak~rggtC~~~~~~p~eeVV~RA~~~L~~G~g~YnL~~NNCEHFA~~CktGl 162 (259)
|++|+.|+.+++ ++.. +...+|+|+++||+||+++|++++ +||||+|||||||+|||||.
T Consensus 65 l~~~~~g~~~~v-----~~~~---------d~~~~p~~~~~iv~rA~~~lg~~~-~Y~l~~nNCEHFa~~cryG~ 124 (125)
T 2lkt_A 65 LEDVVGGCCYRV-----NNSL---------DHEYQPRPVEVIISSAKEMVGQKM-KYSIVSRNCEHFVTQLRYGK 124 (125)
T ss_dssp HHHHHTTCEEEE-----CCHH---------HHHTCCCCHHHHHHHHHHHTTCEE-CSSCHHHHHHHHHHHHHCSC
T ss_pred HHHhcCCCeEEE-----EEcc---------CCCcCCCCHHHHHHHHHHHcCCCC-CcCCCccCHHHHHhhhhccC
Confidence 999999986554 4331 256789999999999999996543 89999999999999999984
No 2
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=99.98 E-value=9e-33 Score=230.39 Aligned_cols=131 Identities=29% Similarity=0.349 Sum_probs=88.3
Q ss_pred cCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCCCccccccccccccccCCCCcccCCCCcCccCCCCceEEcc
Q 025018 8 VERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSC 87 (259)
Q Consensus 8 v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~cg~~~~~~gVv~s~ 87 (259)
..+.+++|||+|+|++.. |+|||||+|+|+|||++++.+. .+.++. ++.+ .......|..+.
T Consensus 3 ~~~~~~~pGDlv~~~~~~--~~H~gIYvG~g~viH~~~~~~~-~~~~~~--~~~s-------------~~~~~a~V~~~~ 64 (140)
T 4dot_A 3 APIPEPKPGDLIEIFRPF--YRHWAIYVGDGYVVHLAPPSEV-AGAGAA--SVMS-------------ALTDKAIVKKEL 64 (140)
T ss_dssp ---CCCCTTCEEEEEETT--EEEEEEEEETTEEEEEECC----------------------------------CEEEEEE
T ss_pred ccccCCCCCCEEEEeCCC--CCEEEEEeCCCeEEecCCCccc-cccccc--ccee-------------cccCCceEEEEE
Confidence 357899999999999976 8999999999999999987642 111110 0011 011234688899
Q ss_pred chhhcCCCceEEEeeccCcceeeehccCCcccccCCCCHHHHHHHHHHHhhcCCcccccccCchhHHHHHhhhCcccccc
Q 025018 88 LDCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDR 167 (259)
Q Consensus 88 L~~Fl~G~~l~~f~Y~vs~~~flak~rggtC~~~~~~p~eeVV~RA~~~L~~G~g~YnL~~NNCEHFA~~CktGl~~~~~ 167 (259)
|++|+.|...+ |+|.+ | ..++|+|+++||+||+++|++ +.+|+|++|||||||+|||||
T Consensus 65 L~d~~~g~~~~-----Vnn~~-----D----~~y~p~~~~~iv~rA~~~lG~-e~~Y~ll~nNCEHFvt~cr~G------ 123 (140)
T 4dot_A 65 LYDVAGSDKYQ-----VNNKH-----D----DKYSPLPCSKIIQRAEELVGQ-EVLYKLTSENCEHFVNELRYG------ 123 (140)
T ss_dssp HHHHHTTSEEE-----ECCGG-----G----GTSCCCCHHHHHHHHHHTTTC-BCSSCCCHHHHHHHHHHHHHC------
T ss_pred HHHhcCCCeEE-----EEecc-----C----CCcCCCCHHHHHHHHHHHcCC-cccccccccChHHHHHHHhcC------
Confidence 99999997533 56543 2 346899999999999999943 369999999999999999997
Q ss_pred CCcccchhhhHH
Q 025018 168 QGVGSSGQASSV 179 (259)
Q Consensus 168 ~g~grSgQa~s~ 179 (259)
+.+|.|+.++
T Consensus 124 --~~~S~Qv~~~ 133 (140)
T 4dot_A 124 --VARSDQVRDL 133 (140)
T ss_dssp --CC--------
T ss_pred --Ccccchhhhh
Confidence 4789998864
No 3
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=99.97 E-value=9.7e-32 Score=223.43 Aligned_cols=128 Identities=28% Similarity=0.355 Sum_probs=86.5
Q ss_pred CCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCCCccccccccccccccCCCCcccCCCCcCccCCCCceEEccc
Q 025018 9 ERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCGFRQPNSGVILSCL 88 (259)
Q Consensus 9 ~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~cg~~~~~~gVv~s~L 88 (259)
.+.+++|||+|+|++.. |+|||||+|+|+|||++++.+. .+.++. ++.| .......|+.+.|
T Consensus 4 ~~~~~~pGDlv~~~~~~--~~H~gIYvG~g~viH~~~~~~~-~~~~~~--~~~s-------------~~~~~a~V~~~~L 65 (137)
T 4dpz_X 4 ARPRPRLGDLIEISRFG--YAHWAIYVGDGYVVHLAPASEI-AGAGAA--SVLS-------------ALTNKAIVKKELL 65 (137)
T ss_dssp CCCCCCTTCEEEEECSS--SEEEEEEEETTEEEEEEECC----------------------------TTCCCEEEEEEEH
T ss_pred ccccCCCCCEEEEeCCC--CCEEEEEeCCCeEEeccCcccc-cccccc--ccee-------------cccCCceEEEEEH
Confidence 36899999999999876 8999999999999999987642 111110 0011 0112345788999
Q ss_pred hhhcCCCceEEEeeccCcceeeehccCCcccccCCCCHHHHHHHHHHHhhcCCcccccccCchhHHHHHhhhCccccccC
Q 025018 89 DCFLGNGSLYCFEYGVAPSVFLAKVRGGTCTTATSDPPETVIHRAMYLLQNGFGNYNVFQNNCEDFALYCRTGLLIVDRQ 168 (259)
Q Consensus 89 ~~Fl~G~~l~~f~Y~vs~~~flak~rggtC~~~~~~p~eeVV~RA~~~L~~G~g~YnL~~NNCEHFA~~CktGl~~~~~~ 168 (259)
++|+.|+... |+|.. | ..++|+|+++|++||+++|++ +.+|+|++|||||||+|||||.
T Consensus 66 ~df~~g~~~~-----VnN~~-----D----~~~~p~~~~~iv~rA~~~lG~-~~~Y~ll~nNCEHFvt~cryG~------ 124 (137)
T 4dpz_X 66 SVVAGGDNYR-----VNNKH-----D----DRYTPLPSNKIVKRAEELVGQ-ELPYSLTSDNCEHFVNHLRYGV------ 124 (137)
T ss_dssp HHHHTTSCEE-----ECCTT-----T----TTSCCCCHHHHHHHHHHHTTC-EEC-----CHHHHHHHHHHHSC------
T ss_pred HHhcCCCeEE-----EEecC-----C----CccCCCCHHHHHHHHHHHcCC-CcccCcCccChHHHHHHHhcCC------
Confidence 9999987533 55543 2 346899999999999999943 2699999999999999999975
Q ss_pred Ccccchhhh
Q 025018 169 GVGSSGQAS 177 (259)
Q Consensus 169 g~grSgQa~ 177 (259)
.+|.|.+
T Consensus 125 --~~S~~~~ 131 (137)
T 4dpz_X 125 --SRSDQLE 131 (137)
T ss_dssp --CCC----
T ss_pred --chhcchh
Confidence 6777765
No 4
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=98.67 E-value=1.9e-08 Score=82.86 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=36.1
Q ss_pred CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCC
Q 025018 4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPE 46 (259)
Q Consensus 4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~ 46 (259)
.+++|+++++||||+|+|.... ...|+|||+|+|++||++..
T Consensus 59 ~g~~V~~~~l~pGDLvFf~~~~-~~~HVGIyiG~g~~IHA~~~ 100 (135)
T 2k1g_A 59 MGKSVSRSNLRTGDLVLFRAGS-TGRHVGIYIGNNQFVHASTS 100 (135)
T ss_dssp GSEEECGGGCCTTEEEEEEETT-TEEEEEEEEETTEEEEEETT
T ss_pred CCcEecHHHccCCcEEEECCCC-CCeEEEEEecCCEEEEECCC
Confidence 4678999999999999987644 36799999999999999764
No 5
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=98.49 E-value=1.6e-07 Score=76.77 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=36.1
Q ss_pred CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCC
Q 025018 4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPE 46 (259)
Q Consensus 4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~ 46 (259)
.+++|+.++++|||+|+|.... ...|+|||+|+|++||.+..
T Consensus 59 ~g~~v~~~~l~pGDLvff~~~~-~~~HVgIy~G~g~~IHa~~~ 100 (136)
T 2jyx_A 59 MGKSVSRSNLRTGDLVLFRAGS-TGRHVGIYIGNNQFVHASTS 100 (136)
T ss_dssp GSEECCTTTCCTTEEEEEECSS-SSEEEEEEEETTEEEEEETT
T ss_pred cCeEcchHhCCCCCEEEECCCC-CCCEEEEEEcCCEEEEECCC
Confidence 4678999999999999987654 36899999999999999873
No 6
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=98.41 E-value=9.2e-07 Score=75.06 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=28.1
Q ss_pred CCCCCCCCCEEEEeecC-----------cccceEEEEEc-CCE--EEEeCC
Q 025018 9 ERNEIKAGDHIYTYRAV-----------FAYSHHGIYVG-GSK--VVHFRP 45 (259)
Q Consensus 9 ~~~~lk~GD~I~~~r~~-----------~~y~H~GIYvG-~g~--VIH~~~ 45 (259)
+..+|+|||+|++.... ..|+|.|||+| +|+ |||+.+
T Consensus 1 ~~~~l~~GDlvf~~~~~~~s~~I~~~t~~~~sHvgI~~~~~~~~~viea~~ 51 (186)
T 2if6_A 1 SLWQPQTGDIIFQISRSSQSKAIQLATHSDYSHTGMLVMRNKKPYVFEAVG 51 (186)
T ss_dssp --CCCCTTCEEEECCCSTTHHHHHHHHTSSCCEEEEEEEETTEEEEEEESS
T ss_pred CcccCCCCCEEEEEcCCchHHHHHHHcCCCCceEEEEEEeCCcEEEEEeCC
Confidence 35789999999986432 14899999999 556 999973
No 7
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=98.35 E-value=4.3e-07 Score=80.07 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=35.9
Q ss_pred CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCC
Q 025018 4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPER 47 (259)
Q Consensus 4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~ 47 (259)
.+++|+.++++|||+|+|.... ..|+|||+|+|++||.....
T Consensus 150 ~g~~V~~~~lqpGDLVff~~g~--~~HVgIYlG~g~~IHA~~~~ 191 (214)
T 3pbi_A 150 AGRHVPPAEAKRGDLIFYGPGG--GQHVTLYLGNGQMLEASGSA 191 (214)
T ss_dssp SSEEECGGGCCTTCEEEESGGG--CSEEEEEEETTEEEEEETTT
T ss_pred cCeeechhhCCCCCEEEecCCC--CCEEEEEecCCEEEEECCCC
Confidence 4678999999999999985443 58999999999999998754
No 8
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=98.31 E-value=3.4e-07 Score=75.21 Aligned_cols=38 Identities=13% Similarity=0.333 Sum_probs=33.0
Q ss_pred CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEe
Q 025018 4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHF 43 (259)
Q Consensus 4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~ 43 (259)
.+.+|+.++++|||+|+|...+ ..|+|||+|+|++||.
T Consensus 81 ~g~~v~~~~~~pGDlvff~~~~--~~HVgIy~G~g~~iha 118 (142)
T 3gt2_A 81 VGQKILPQQARKGDLIFYGPEG--TQSVAMYLGNNQMLEV 118 (142)
T ss_dssp SSEEECGGGCCTTCEEEESGGG--CSEEEEEEETTEEEEE
T ss_pred hCceechhhCCCCCEEEeCCCC--CCEEEEEecCCEEEeC
Confidence 4678999999999999886544 6899999999999994
No 9
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=98.31 E-value=4.2e-07 Score=80.16 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=35.4
Q ss_pred CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCCC
Q 025018 4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPER 47 (259)
Q Consensus 4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~~ 47 (259)
.+.+|+.++++|||+|+|.... ..|+|||+|+|++||.+...
T Consensus 150 ~g~~V~~~~lqpGDLvFf~~g~--~~HVgIYlG~g~~IHA~~~g 191 (214)
T 3ne0_A 150 LGRKIPSSQMRRGDVIFYGPNG--SQHVTIYLGNGQMLEAPDVG 191 (214)
T ss_dssp SSEEEEGGGCCTTCEEEESGGG--CSEEEEEEETTEEEECCSTT
T ss_pred cCceechhhCCCCCEEEecCCC--CCEEEEEeCCCEEEEeCCCC
Confidence 3578999999999999885433 58999999999999997643
No 10
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=98.21 E-value=4.8e-06 Score=72.92 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=40.9
Q ss_pred CCCCCCCCEEEEeecC-----------cccceEEEEEcCCE---EEEeCCCCCccccccccccccccCCCCcccCCCCcC
Q 025018 10 RNEIKAGDHIYTYRAV-----------FAYSHHGIYVGGSK---VVHFRPERNLIVGAETSSETQNSILPSSCLIFPDCG 75 (259)
Q Consensus 10 ~~~lk~GD~I~~~r~~-----------~~y~H~GIYvG~g~---VIH~~~~~~~~~g~~t~l~~~~s~~p~~~~~~~~cg 75 (259)
+.+|++||+|++.... ..|+|.|||+|++. |||+....
T Consensus 37 ~~~l~~GDlif~~~~~~~s~~I~~~T~s~~sHvgI~~~~~~~~~vieA~~~~---------------------------- 88 (214)
T 3kw0_A 37 INVLKTGDIFLCSGNYLVSKLIKKVSESMFSHTGIIVKWGEHTLIMESVEDD---------------------------- 88 (214)
T ss_dssp TTTCCTTCEEEEEECSHHHHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTT----------------------------
T ss_pred HhhCCCCCEEEEeCCCcHHHHHHHhcCCCCcEEEEEEecCCceEEEEecCCC----------------------------
Confidence 4789999999996432 25899999999886 99996532
Q ss_pred ccCCCCceEEccchhhcCC
Q 025018 76 FRQPNSGVILSCLDCFLGN 94 (259)
Q Consensus 76 ~~~~~~gVv~s~L~~Fl~G 94 (259)
||+.+.|+.|+..
T Consensus 89 ------GV~~~~L~~fl~~ 101 (214)
T 3kw0_A 89 ------GVRIVPLEHYIKN 101 (214)
T ss_dssp ------EEEEEETHHHHHC
T ss_pred ------CEEEecHHHHHHH
Confidence 6888999999954
No 11
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=98.10 E-value=2.2e-06 Score=76.30 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=36.2
Q ss_pred CCcccCCCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCC
Q 025018 4 LTNRVERNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPE 46 (259)
Q Consensus 4 ~~~~v~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~ 46 (259)
.+++|+.++++|||+|+|.... ...|+|||+|+|++||.+..
T Consensus 152 ~g~~v~~~~l~pGDLvff~~~~-~~~HVgIy~G~g~~IHa~~~ 193 (235)
T 2hbw_A 152 FTQAITIDELAPGDLVFFGTPV-KATHVGLYLGDGCYIHSSGK 193 (235)
T ss_dssp HSEEECGGGCCTTCEEEEECSS-CEEEEEEEEETTEEEEEECT
T ss_pred hCccccHhhCCCCCEEEECCCC-CCCEEEEEeCCCEEEEECCC
Confidence 3578899999999999987544 47899999999999999875
No 12
>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}
Probab=98.09 E-value=2.7e-06 Score=77.92 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=35.8
Q ss_pred CCcccCCCCCCCCCEEEEeec--CcccceEEEEEcCCEEEEeCCCC
Q 025018 4 LTNRVERNEIKAGDHIYTYRA--VFAYSHHGIYVGGSKVVHFRPER 47 (259)
Q Consensus 4 ~~~~v~~~~lk~GD~I~~~r~--~~~y~H~GIYvG~g~VIH~~~~~ 47 (259)
.+.+|+.++++|||+|+|... .....|.|||+|+|++||.+...
T Consensus 241 ~g~~v~~~~~~pGDlvff~~~~~~~~~~HVgiy~G~g~~iha~~~~ 286 (311)
T 3h41_A 241 NGVAVDKEHLQKGDLIFFAHDQGKGSVHHVAMYIGDGNMIHSPRAE 286 (311)
T ss_dssp SSEEECGGGCCTTCEEEEEHHHHTSCEEEEEEEEETTEEEECCCTT
T ss_pred CCEEEcHHHCCCCCEEEEecCCCCCCCcEEEEEEeCCEEEEECCCC
Confidence 467899999999999999742 11367999999999999997643
No 13
>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A
Probab=98.01 E-value=5.6e-06 Score=75.14 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=33.7
Q ss_pred CCcccCC----CCCCCCCEEEEeec-----CcccceEEEEEcCCEEEEeCC
Q 025018 4 LTNRVER----NEIKAGDHIYTYRA-----VFAYSHHGIYVGGSKVVHFRP 45 (259)
Q Consensus 4 ~~~~v~~----~~lk~GD~I~~~r~-----~~~y~H~GIYvG~g~VIH~~~ 45 (259)
.+.+|+. ++++|||+|+|... .....|.|||+|+|++||++.
T Consensus 208 ~g~~v~~~~~~~~~~pGDLvff~~~~~~~~~~~~~Hvgiy~g~~~~iha~~ 258 (306)
T 3npf_A 208 VGEHIDIAPDFSNVKRGDLVFFGRKATAERKEGISHVGIYLGNKQFIHALG 258 (306)
T ss_dssp SSEEECCCTTCTTCCTTCEEEEEECCCSSSCCEEEEEEEEEETTEEEEESS
T ss_pred CCcEecccCccccCCCccEEEECCCCccCCCCCCeEEEEEECCCEEEEcCC
Confidence 3555654 89999999999762 234679999999999999975
No 14
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=97.88 E-value=8e-06 Score=75.11 Aligned_cols=40 Identities=30% Similarity=0.453 Sum_probs=33.6
Q ss_pred CCcccCCCCCCCCCEEEEeec---CcccceEEEEEcCCEEEEe
Q 025018 4 LTNRVERNEIKAGDHIYTYRA---VFAYSHHGIYVGGSKVVHF 43 (259)
Q Consensus 4 ~~~~v~~~~lk~GD~I~~~r~---~~~y~H~GIYvG~g~VIH~ 43 (259)
.+.+|+.++++|||+|+|... +....|+|||+|+|++||.
T Consensus 240 ~g~~v~~~~l~pGDLvff~~~~~~~~~~~HVgIy~G~g~~iha 282 (308)
T 4hpe_A 240 ATQHLPLSQAKAGDLVFFHSTYNAGSYVTHVGIYVGNNQMYHA 282 (308)
T ss_dssp TSEEECGGGCCTTCEEEEECSSSCSSSEEEEEEECSTTEEEEC
T ss_pred cCeeechhhCCCCCEEEEcCCCCCCCCccEEEEEEcCCEEEEe
Confidence 357899999999999999642 2236799999999999999
No 15
>4fdy_A Similar to lipoprotein, NLP/P60 family; SLT/lysozyme-like muramidase, NLPC/P60 LD endopeptidase, STR genomics; 2.23A {Staphylococcus aureus subsp}
Probab=97.83 E-value=1.3e-05 Score=74.24 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=32.8
Q ss_pred CcccCCCCCCCCCEEEEeec---CcccceEEEEEcCCEEEEe
Q 025018 5 TNRVERNEIKAGDHIYTYRA---VFAYSHHGIYVGGSKVVHF 43 (259)
Q Consensus 5 ~~~v~~~~lk~GD~I~~~r~---~~~y~H~GIYvG~g~VIH~ 43 (259)
+.+|+.++++|||+|+|... +....|+|||+|+|++||.
T Consensus 245 g~~V~~~~lqpGDLvff~~~~~~g~~~~HVGIYlG~g~~IHA 286 (313)
T 4fdy_A 245 TQEISMEEAQAGDLIFFHSTYNAGTYVTHVAIYLEGNRFYHA 286 (313)
T ss_dssp SEEECTTTCCTTCEEEESSSSCCSSSCCEEEEEEETTEEEES
T ss_pred CceechhhCCCCCEEEEecCCCCCCCCcEEEEEecCCEEEEe
Confidence 56789999999999998632 2236899999999999999
No 16
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=95.42 E-value=0.01 Score=50.49 Aligned_cols=58 Identities=28% Similarity=0.432 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHhhcC-C--cccccccCchhHHHHHhhhCccccccCCcccchhhhHHhhhhHHHHhhccc
Q 025018 125 PPETVIHRAMYLLQNG-F--GNYNVFQNNCEDFALYCRTGLLIVDRQGVGSSGQASSVIGAPLAAILSSPL 192 (259)
Q Consensus 125 p~eeVV~RA~~~L~~G-~--g~YnL~~NNCEHFA~~CktGl~~~~~~g~grSgQa~s~l~~~l~a~~s~pl 192 (259)
+.++ +++....|... + ..|||+.+||-||+...-.=+. + ..+.+++...-..+++||+
T Consensus 80 ~~~~-~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~-------g--k~IP~wInrl~~~vl~tp~ 140 (168)
T 2wp7_A 80 TEEI-FLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLT-------G--RKIPSYITDLPSEVLSTPF 140 (168)
T ss_dssp CHHH-HHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHH-------S--CCCCHHHHTHHHHHHTSHH
T ss_pred CHHH-HHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhc-------C--CCCcHHHHHHHHHHhcCcH
Confidence 4444 44555555443 4 4999999999999987644221 1 1355555554345667765
No 17
>3m1u_A Putative gamma-D-glutamyl-L-diamino acid endopept; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Desulfovibrio vulgaris}
Probab=94.32 E-value=0.0038 Score=59.98 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=31.6
Q ss_pred CCcccCCCCCCCCC--------EEEEeecCcccceEEEEEcCC----EEEEeCC
Q 025018 4 LTNRVERNEIKAGD--------HIYTYRAVFAYSHHGIYVGGS----KVVHFRP 45 (259)
Q Consensus 4 ~~~~v~~~~lk~GD--------~I~~~r~~~~y~H~GIYvG~g----~VIH~~~ 45 (259)
.|.+|+.++++||| +|+|....+...|+|||+|++ .+||...
T Consensus 328 ~g~~v~~~~l~pGD~~~~i~~~lvfF~~~~~~~gHVgIYiG~~~g~~~~ih~~~ 381 (434)
T 3m1u_A 328 AGRYVDIAKLDADDKEARIVAEGVPFMTLLWLRGHITLYLGLHEGQAAMFHNMW 381 (434)
T ss_dssp TSEEEECTTSCHHHHHHHHHHHCCTTSEEEEETTEEEEEEEEETTEEEEEEEEE
T ss_pred cCeecCHHHCCCCcccccccccccccccCCCCCCeEEEEecCCCCcEEEEEeCC
Confidence 46789999999999 666543333346999999975 6788764
No 18
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=90.63 E-value=0.46 Score=42.61 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=28.8
Q ss_pred CCCCCCCEEEEeec--CcccceEEEEEc---CCEEEEeCCCC
Q 025018 11 NEIKAGDHIYTYRA--VFAYSHHGIYVG---GSKVVHFRPER 47 (259)
Q Consensus 11 ~~lk~GD~I~~~r~--~~~y~H~GIYvG---~g~VIH~~~~~ 47 (259)
.+++.||+|.+... +-..+|.||++- .-.++|+++..
T Consensus 170 ~~l~~GDiI~i~t~~~GLDVsHvGi~i~~~~~l~f~hASs~~ 211 (249)
T 2p1g_A 170 PWIKNGDIIALTTNTPGLDVSHMGIAIYIKGQLHLLHASSKE 211 (249)
T ss_dssp TTSCTTCEEEEEECSTTCSEEEEEEEEEETTEEEEEEEETTT
T ss_pred hcCCCCCEEEEEeCCCCCceeEEEEEEEECCeEEEEEcCCCC
Confidence 77999999999874 334799999994 33778888754
No 19
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=64.50 E-value=7.1 Score=36.30 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=27.7
Q ss_pred CCCCCCCEEEEeec----------CcccceEEEEEc-CC--EEEEeCCCC
Q 025018 11 NEIKAGDHIYTYRA----------VFAYSHHGIYVG-GS--KVVHFRPER 47 (259)
Q Consensus 11 ~~lk~GD~I~~~r~----------~~~y~H~GIYvG-~g--~VIH~~~~~ 47 (259)
.+++.||+|.+.+. +-..+|.||.+- +| .+.|+++..
T Consensus 239 ~~I~~GDII~I~t~~~~l~~~ig~GLDVsHvGiai~~~g~l~lrhASS~~ 288 (333)
T 2im9_A 239 SQIPNGAVIEIIRPNWDLRQQIGTELDISHLGFAIWINNELFFRQASSQY 288 (333)
T ss_dssp TTSCTTCEEEEEEEEECCHHHHSSCEEEEEEEEEEEETTEEEEEEEETTT
T ss_pred hhCCCCCEEEEEecCccccccccCCCcceEEEEEEEECCeEEEEecCCCC
Confidence 78999999999873 345799999884 33 557777643
No 20
>4h4j_A Hypothetical protein; PF07313 family protein, DUF 1460, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.15A {Bacteroides uniformis}
Probab=48.80 E-value=17 Score=32.03 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=28.8
Q ss_pred CCCCCCCEEEEeec--CcccceEEEEEcC-C--EEEEeCCCCC
Q 025018 11 NEIKAGDHIYTYRA--VFAYSHHGIYVGG-S--KVVHFRPERN 48 (259)
Q Consensus 11 ~~lk~GD~I~~~r~--~~~y~H~GIYvG~-g--~VIH~~~~~~ 48 (259)
.+++.||+|-+.+. +-..+|.||.+=. | .++|+++..+
T Consensus 169 ~~l~~GDiIai~t~~~GLDvsH~Giai~~~~~l~l~hASS~~~ 211 (240)
T 4h4j_A 169 PWIKDGDIIAITTNTPGLDVAHMGIAFYADNKLLLVHASSTDK 211 (240)
T ss_dssp TTSCTTCEEEEEECSTTCSEEEEEEEEEETTEEEEEEEETTTT
T ss_pred hhCCCCcEEEEEecCCCceEEEEEEEEEECCeEEEEEcCCCCC
Confidence 57999999999764 3458999999843 2 5788887544
No 21
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=41.85 E-value=30 Score=25.23 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=23.8
Q ss_pred CCCCCCCEEEEeecCcccceEEEEEcCCEEEE
Q 025018 11 NEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVH 42 (259)
Q Consensus 11 ~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH 42 (259)
-+|++||+|...+.. ....-||+++-.+.+
T Consensus 34 l~L~~GdVi~Ld~~~--~e~v~i~vng~~~~~ 63 (84)
T 1o9y_A 34 RRLDAGTILEVTGIS--PGHATLCHGEQVVAE 63 (84)
T ss_dssp HTCCTTCEEEECSSC--TTEEEEEETTEEEEE
T ss_pred hcCCCCCEEEeCCCC--CCCEEEEECCEEEEE
Confidence 579999999998865 588999998754443
No 22
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=36.96 E-value=16 Score=35.64 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=28.1
Q ss_pred CCCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCC
Q 025018 10 RNEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPE 46 (259)
Q Consensus 10 ~~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~ 46 (259)
.-.|+|||++|+.++ +.|++...++..=+|++-+
T Consensus 229 e~~L~pGDvLYiP~g---~~H~~~s~~~~~SlhlTi~ 262 (489)
T 4diq_A 229 QTVLEPGDLLYFPRG---FIHQAECQDGVHSLHLTLS 262 (489)
T ss_dssp EEEECTTCEEEECTT---CEEEEEBCSSCCEEEEEEE
T ss_pred EEEECCCCEEEECCC---CceEEEecCCCceEEEeec
Confidence 356899999999886 4899999987777888854
No 23
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=36.63 E-value=15 Score=33.51 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=25.1
Q ss_pred CCCCCCCEEEEeecCcccceEEEEEcCCEEEEeCCC
Q 025018 11 NEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHFRPE 46 (259)
Q Consensus 11 ~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~~~~ 46 (259)
-.|+|||++|+.+.- .|++...++..=+|++-.
T Consensus 220 ~~L~pGD~LyiP~gw---wH~v~s~~~~~slsvsi~ 252 (342)
T 1vrb_A 220 VNLTPGTMLYLPRGL---WHSTKSDQATLALNITFG 252 (342)
T ss_dssp EEECTTCEEEECTTC---EEEEECSSCEEEEEEEEC
T ss_pred EEECCCcEEEeCCCc---cEEEEECCCCceEEEEEC
Confidence 368999999998764 799999865455676643
No 24
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=34.84 E-value=34 Score=25.59 Aligned_cols=31 Identities=19% Similarity=0.088 Sum_probs=24.2
Q ss_pred CCCCCCCEEEEeecCcccceEEEEEcCCEEEEe
Q 025018 11 NEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVHF 43 (259)
Q Consensus 11 ~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH~ 43 (259)
.+|++||+|...+.. ....-||+++-.+.+-
T Consensus 38 l~L~~GdVI~Ld~~~--~~~v~v~v~g~~i~~G 68 (96)
T 1o6a_A 38 LEMIHGSIIELDKLT--GEPVDILVNGKLIARG 68 (96)
T ss_dssp HHCCTTCEEEEEEET--TCCEEEEETTEEEEEE
T ss_pred hCCCCCCEEEeCCCC--CCcEEEEECCEEEEEE
Confidence 468999999999865 5788999987555443
No 25
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=34.16 E-value=39 Score=25.43 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=23.8
Q ss_pred CCCCCCCEEEEeecCcccceEEEEEcCCEEEE
Q 025018 11 NEIKAGDHIYTYRAVFAYSHHGIYVGGSKVVH 42 (259)
Q Consensus 11 ~~lk~GD~I~~~r~~~~y~H~GIYvG~g~VIH 42 (259)
.+|++||+|...+.. ....-||+++-.+.+
T Consensus 38 l~L~~GdVI~Ld~~~--~~~v~i~vng~~i~~ 67 (96)
T 3uep_A 38 TSLEPGSLIDLTTPV--DGEVRLLANGRLLGH 67 (96)
T ss_dssp HHCCTTCEEEEEEES--SCEEEEEETTEEEEE
T ss_pred hcCCCCCEEEeCCCC--CCcEEEEECCEEEEE
Confidence 468999999999865 589999998754433
No 26
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=26.33 E-value=30 Score=32.94 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=25.6
Q ss_pred CCCCCCCCEEEEeecCcccceEEEEEcC-CEEEEeCCC
Q 025018 10 RNEIKAGDHIYTYRAVFAYSHHGIYVGG-SKVVHFRPE 46 (259)
Q Consensus 10 ~~~lk~GD~I~~~r~~~~y~H~GIYvG~-g~VIH~~~~ 46 (259)
...|+|||.+|+.++- .|++...++ ..=+|++-.
T Consensus 200 ~~~L~pGD~LYiP~g~---~H~~~s~~~~~~SlhlT~~ 234 (442)
T 2xdv_A 200 EFMLKPGDLLYFPRGT---IHQADTPAGLAHSTHVTIS 234 (442)
T ss_dssp EEEECTTCEEEECTTC---EEEEECCSSSCCEEEEEEE
T ss_pred EEEECCCcEEEECCCc---eEEEEecCCCcceeecccc
Confidence 3568999999998764 899999863 445777643
No 27
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=25.07 E-value=28 Score=21.62 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=14.6
Q ss_pred CchhHHHHHHHhhhhhhhh
Q 025018 197 PSPVGMATVTAGMYCMSRY 215 (259)
Q Consensus 197 ~~~~g~a~~~~~~y~~~r~ 215 (259)
.++.+.++++.++|+.+|+
T Consensus 15 gdi~~t~~i~~~vy~~~r~ 33 (33)
T 2l34_A 15 GDLVLTVLIALAVYFLGRL 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhheecC
Confidence 3456778899999999984
No 28
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=23.83 E-value=61 Score=27.68 Aligned_cols=27 Identities=15% Similarity=-0.006 Sum_probs=20.9
Q ss_pred CCCCCCCCEEEEeecC--cccceEEEEEc
Q 025018 10 RNEIKAGDHIYTYRAV--FAYSHHGIYVG 36 (259)
Q Consensus 10 ~~~lk~GD~I~~~r~~--~~y~H~GIYvG 36 (259)
...+++||+|.+.... ..|-|++|...
T Consensus 109 ~~~P~~Gdl~V~~~g~~~~~yGHVAvV~~ 137 (197)
T 3a2z_A 109 PRAPVAGALLIWDKGGEFKDTGHVAIITQ 137 (197)
T ss_dssp SSCCCTTCEEEECSCGGGTTTCEEEEEEE
T ss_pred CCCCCCCeEEEECCCCcCCCCccEEEEEE
Confidence 4789999999886632 35899999865
No 29
>3vpi_A Type VI secretion exported 1; hydrolase; HET: MSE; 1.50A {Pseudomonas aeruginosa} PDB: 3vpj_A
Probab=20.73 E-value=50 Score=27.57 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=23.5
Q ss_pred CCCCCCCCCEEEEeecCcccceEEEEEcCC
Q 025018 9 ERNEIKAGDHIYTYRAVFAYSHHGIYVGGS 38 (259)
Q Consensus 9 ~~~~lk~GD~I~~~r~~~~y~H~GIYvG~g 38 (259)
+.++.+|||+|......-.+-|+.||+|+-
T Consensus 90 A~~~A~~GyLVi~glK~~~hGHVvIvigGp 119 (174)
T 3vpi_A 90 AAQKAAQGFLVIAGLKGRTYGHVAVVISGP 119 (174)
T ss_dssp HHHHHHTTCCEEEEECCSSCCEEEEECCSC
T ss_pred HHHhcCCCCeEEeecccCCCceEEEEeCCc
Confidence 456678999999876554578999999864
No 30
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=20.22 E-value=44 Score=25.76 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=14.5
Q ss_pred ccCCCCCCCCCEEEEeecC
Q 025018 7 RVERNEIKAGDHIYTYRAV 25 (259)
Q Consensus 7 ~v~~~~lk~GD~I~~~r~~ 25 (259)
+-+...||+||.|+.|-..
T Consensus 63 ~d~~~~lk~GD~i~Yw~~V 81 (106)
T 3aqy_A 63 RDRNVKLKLGDKIYFWTYV 81 (106)
T ss_dssp EECSCCCCTTCEEEEEEEE
T ss_pred ECCceEeCCCCEEEEEEEE
Confidence 3456789999999987643
No 31
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=20.10 E-value=78 Score=24.07 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.9
Q ss_pred ccCCCCCCCCCEEEEeecC
Q 025018 7 RVERNEIKAGDHIYTYRAV 25 (259)
Q Consensus 7 ~v~~~~lk~GD~I~~~r~~ 25 (259)
.|+.++++|||+|.+..+.
T Consensus 24 ~i~~~~l~~GDiv~v~~G~ 42 (113)
T 2hc8_A 24 AVPVEEVAVGDIVIVRPGE 42 (113)
T ss_dssp EEEGGGCCTTCEEEECTTC
T ss_pred EEEHHHCCCCCEEEECCCC
Confidence 5788999999999996544
Done!