BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025019
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87130|TIM17_SCHPO Mitochondrial import inner membrane translocase subunit tim17
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim17 PE=3 SV=1
Length = 164
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 59 AIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAG 118
++G G + + +PP + ++ A+A + V GG NF V G+ +
Sbjct: 24 SMGTIGGAIWHSIKGWRNSPPGEKRIS--AIAAAKTRAPVLGG------NFGVWGGLFST 75
Query: 119 ISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVN-AFTSGLLFAIFQGCSFK 177
C +K +R KED ++++A F +G A ++ GG N A + A+F+G
Sbjct: 76 FDCAVKGVRRKEDPWNAIIAGFFTGGALAV---RGGWRATRNGAIGCACILAVFEGLGIA 132
Query: 178 IGEMWQSTQRPTA 190
+G M RP A
Sbjct: 133 LGRMNAEYNRPVA 145
>sp|Q12328|TIM22_YEAST Mitochondrial import inner membrane translocase subunit TIM22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM22 PE=1 SV=1
Length = 207
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG 151
A+NF I + AG+ CV++ LR K D+ + V A F +GA + +G
Sbjct: 126 AKNFGYIGMIYAGVECVIESLRAKNDIYNGVTAGFFTGAGLAYKAG 171
>sp|Q75E80|TIM22_ASHGO Mitochondrial import inner membrane translocase subunit TIM22
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TIM22 PE=3 SV=1
Length = 201
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 42 LPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGG 101
P ++AI T G G F+ M D + L TP P + + +Q +A
Sbjct: 42 CPGKSAISGVTGFALGGVFGLFMASMAYD--TPLHTPAPVGAGPGAGIPGAPTLQQMADL 99
Query: 102 PLVQ----------------ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAA 145
PL Q A+NF I + +G+ C ++ LR K DL + V A +G
Sbjct: 100 PLKQQIKIQFADMGRRAYSSAKNFGYIGMIYSGVECTIESLRAKNDLYNGVAAGCLTGGG 159
Query: 146 FSLVSG 151
+ SG
Sbjct: 160 LAYKSG 165
>sp|Q6CRJ6|TIM22_KLULA Mitochondrial import inner membrane translocase subunit TIM22
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM22
PE=3 SV=1
Length = 196
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 23/126 (18%)
Query: 42 LPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGG 101
P +AAI T G G F+ M D P P L +V+ +A
Sbjct: 42 CPGKAAISGVTGFALGGVFGLFMASMAYDTPLHTPAPTNAPGLP-------NKVKELADL 94
Query: 102 PLVQ----------------ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAA 145
PL Q A+NF I + +G+ CV++ LR K D+ + V A +G
Sbjct: 95 PLKQQIKIQFSDMGKRSYSSAKNFGYIGMIYSGVECVVESLRAKNDIYNGVAAGCLTGGG 154
Query: 146 FSLVSG 151
+ SG
Sbjct: 155 LAYKSG 160
>sp|Q5M7K0|TIM22_XENTR Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus tropicalis GN=timm22 PE=2 SV=1
Length = 186
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 51 ATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFA 110
A + G +G GV T + +++ P P A + + + A+NFA
Sbjct: 66 ALACVGGFVLGGAFGVFTAGIDTNVGFDPKDPYRTPTAKEVLKDMGQRG---MSYAKNFA 122
Query: 111 VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152
++ + + C+++ RGK D ++SV++ +G A +G+
Sbjct: 123 IVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGL 164
>sp|Q5BIN4|TIM22_BOVIN Mitochondrial import inner membrane translocase subunit Tim22
OS=Bos taurus GN=TIMM22 PE=2 SV=1
Length = 194
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 46 AAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQ 105
A A + G +G GV T + +++ P P A + + +
Sbjct: 69 CAFKAALACVGGFVLGGAFGVFTAGIDTNVGFDPKDPYRTPTAREVLKDMGQRG---MSY 125
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152
A+NFA++ + + C+++ RGK D ++SV++ +G A +G+
Sbjct: 126 AKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGL 172
>sp|Q6FT37|TIM22_CANGA Mitochondrial import inner membrane translocase subunit TIM22
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=TIM22 PE=3 SV=1
Length = 193
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 26/126 (20%)
Query: 42 LPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGG 101
P ++ I AT G +G F+ M D P P S VQ +A
Sbjct: 42 CPGKSVISGATGFALGGVLGLFMASMAYDTPLHTPVPGGMSG----------AVQQMADL 91
Query: 102 PLVQ----------------ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAA 145
PL Q A+NF I + AG+ C ++ LR K D+ + + A +G
Sbjct: 92 PLRQQVKLQFADMGKRAYSSAKNFGYIGMIYAGVECAVESLRAKNDIYNGITAGCITGGG 151
Query: 146 FSLVSG 151
+ SG
Sbjct: 152 LAYKSG 157
>sp|Q5U4U5|TIM22_XENLA Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus laevis GN=timm22 PE=2 SV=1
Length = 184
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 51 ATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFA 110
A + G +G GV T + +++ P P A + + + A+NFA
Sbjct: 64 ALACVGGFVLGGAFGVFTAGIDTNVGFDPKDPLRTPTAKEVLRDMGQRG---MSYAKNFA 120
Query: 111 VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152
++ + + C+++ RGK D ++SV++ +G A +G+
Sbjct: 121 IVGAMFSCTECLVESYRGKSDWKNSVMSGCITGGAIGFRAGL 162
>sp|Q9SP35|TI172_ARATH Mitochondrial import inner membrane translocase subunit TIM17-2
OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2
Length = 243
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLL 167
+FAV G+ + C M LR KED +S++A +G S+ G G A + +A G+L
Sbjct: 65 SFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAA--SRSAIFGGVL 122
Query: 168 FAIFQGCSFKIGEMWQSTQRPTADD 192
A+ +G + ++ Q +D
Sbjct: 123 LALIEGAGIMLNKVLAQPQNMMMED 147
>sp|Q9JKW1|TIM22_RAT Mitochondrial import inner membrane translocase subunit Tim22
OS=Rattus norvegicus GN=Timm22 PE=2 SV=2
Length = 192
Score = 37.7 bits (86), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 54 AINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVIT 113
+ G +G GV T + +++ P P A + + + A+NFA++
Sbjct: 75 CVGGFVLGGAFGVFTAGIDTNVGFDPKDPYRTPTAREVLKDMGQRG---MSYAKNFAIVG 131
Query: 114 GVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTS 164
+ + C+++ RGK D ++SV++ +G A +G+ F +
Sbjct: 132 AMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGVKAGAIGCGGFAA 182
>sp|Q6NKU9|TI223_ARATH Mitochondrial import inner membrane translocase subunit TIM22-3
OS=Arabidopsis thaliana GN=TIM22-3 PE=2 SV=1
Length = 214
Score = 37.7 bits (86), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSL 148
A+ FAV++GV++ + C++K++RGK+D + VA +G A S
Sbjct: 88 AKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSF 130
>sp|P0CR88|TIM22_CRYNJ Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=TIM22 PE=3 SV=1
Length = 187
Score = 37.4 bits (85), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 55 INGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITG 114
+ G AIG F +M+ P + L + + R FA +
Sbjct: 61 VGGLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEMGRNMWSSGRGFAKVGM 120
Query: 115 VNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTSGL 166
V +G+ C ++ R K D+ + V A F +GA + +G M G A AF+ +
Sbjct: 121 VYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGPTAMLGGGVAFAAFSGAI 175
>sp|P0CR89|TIM22_CRYNB Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=TIM22 PE=3 SV=1
Length = 187
Score = 37.4 bits (85), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 55 INGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITG 114
+ G AIG F +M+ P + L + + R FA +
Sbjct: 61 VGGLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEMGRNMWSSGRGFAKVGM 120
Query: 115 VNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTSGL 166
V +G+ C ++ R K D+ + V A F +GA + +G M G A AF+ +
Sbjct: 121 VYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGPTAMLGGGVAFAAFSGAI 175
>sp|Q94EH2|TI222_ARATH Mitochondrial import inner membrane translocase subunit TIM22-2
OS=Arabidopsis thaliana GN=TIM22-2 PE=2 SV=1
Length = 210
Score = 37.4 bits (85), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 105 QARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSL 148
A+ FAV++GV++ + C++K++RGK+D + VA +G A S
Sbjct: 87 SAKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSF 130
>sp|Q6BZY4|TIM22_YARLI Mitochondrial import inner membrane translocase subunit TIM22
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TIM22 PE=3 SV=2
Length = 185
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG 151
A+NF I GV +G C ++ LR K D+ + V A +G ++ +G
Sbjct: 104 AKNFGFIGGVFSGTECCIESLRAKNDIWNGVAAGCLTGGGLAVKAG 149
>sp|Q9Y584|TIM22_HUMAN Mitochondrial import inner membrane translocase subunit Tim22
OS=Homo sapiens GN=TIMM22 PE=1 SV=2
Length = 194
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 46 AAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQ 105
A A + G +G GV T + +++ P P A + + +
Sbjct: 69 CAFKAALACVGGFVLGGAFGVFTAGIDTNVGFDPKDPYRTPTAKEVLKDMGQRG---MSY 125
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152
A+NFA++ + + C+++ RG D ++SV++ +G A +G+
Sbjct: 126 AKNFAIVGAMFSCTECLIESYRGTSDWKNSVISGCITGGAIGFRAGL 172
>sp|P51176|TGM2_BOVIN Protein-glutamine gamma-glutamyltransferase 2 OS=Bos taurus GN=TGM2
PE=1 SV=1
Length = 687
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 100/256 (39%), Gaps = 38/256 (14%)
Query: 28 ELENGYKSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPD 87
+L+ GY+ W A P P E + T + A + DL++ P + +N D
Sbjct: 346 DLQPGYEGWQALDPTPQEKS--EGTYCCGPVPVRA---IKEGDLSTKYDAPFVFAEVNAD 400
Query: 88 AVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFS 147
V +Q G L ++ N +++ G+ CV + R ED+ S GS
Sbjct: 401 VVDWIRQ----DDGSLHKSINHSLVVGLKISTKCVGRDDR--EDITHSYKYPEGSPEERE 454
Query: 148 LVSGMGGANPAVNAFTSGLLFAIF------QGCSFKI-GEMWQST-QRPTADDVYYART- 198
+ N VN +G+ I +GC F + + ST + T + ART
Sbjct: 455 AFTRANHLNKLVNKEETGVAMRIRVGEGMNRGCDFDVFAHITNSTPEEHTGRLLLCARTV 514
Query: 199 --RGMLD---------KLGLQNYT-KNFKRGLLTDSTLPLLTDSALRDVR---IPPGPRL 243
G+L L L+ Y+ K+ +L + LT+S L VR I P
Sbjct: 515 SYNGILGPECGTKDLLSLSLEPYSEKSIPLRILYEKYCDCLTESNLIKVRGLLIEPAANS 574
Query: 244 LIL---DHIQRDPELK 256
+L D +PE+K
Sbjct: 575 YLLAERDIYLENPEIK 590
>sp|Q80Y98|DDHD2_MOUSE Phospholipase DDHD2 OS=Mus musculus GN=Ddhd2 PE=1 SV=3
Length = 699
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 153 GGANPAVNAFTSGLLFAIFQGCSFKIGEM-WQSTQRPTADDVYYART-RGMLDKLGLQNY 210
GG + A ++ S +LF I IG++ + +A+D A T L KL L +
Sbjct: 343 GGVSIAGHSLGSLILFDILTNQKNSIGDIDSEKGSLSSAEDRGDASTLEEDLKKLQLSEF 402
Query: 211 TKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHI 249
F++ + L L TD L+++ IP GPR IL+H
Sbjct: 403 VTVFEKEKVDREALALCTDRDLQEMGIPLGPRKKILNHF 441
>sp|Q9CQ85|TIM22_MOUSE Mitochondrial import inner membrane translocase subunit Tim22
OS=Mus musculus GN=Timm22 PE=2 SV=1
Length = 194
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 54 AINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVIT 113
+ G +G G+ T + +++ P P A + + + A+NFA++
Sbjct: 77 CVGGFVLGGAFGIFTAGIDTNVGFDPKDPYRTPTAKEVLKDMGQRG---MSYAKNFAIVG 133
Query: 114 GVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGM 152
+ + C+++ RGK D ++SV++ +G A +G+
Sbjct: 134 AMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGV 172
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Homo sapiens GN=TIMM17B PE=1 SV=1
Length = 172
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTS 164
+FAV G+ + I C + RLRGKED +S+ + +GA + SG M G +A
Sbjct: 65 SFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVG-----SAMMG 119
Query: 165 GLLFAIFQG 173
G+L A+ +G
Sbjct: 120 GILLALIEG 128
>sp|Q9LN27|TI171_ARATH Mitochondrial import inner membrane translocase subunit TIM17-1
OS=Arabidopsis thaliana GN=TIM17-1 PE=2 SV=1
Length = 218
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLL 167
+F+V G+ + C + R KED +S+++ +G SL G+G + A +A G+L
Sbjct: 65 SFSVWGGLYSTFDCALVYARQKEDPWNSILSGAATGGFLSLRQGLGAS--ARSALVGGVL 122
Query: 168 FAIFQGCSFKIGEMWQST 185
A+ +G + ++ QST
Sbjct: 123 LAMIEGVGIMLNKV-QST 139
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Mus musculus GN=Timm17b PE=2 SV=1
Length = 172
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTS 164
+FAV G+ + I C + RLRGKED +S+ + +GA + SG M G +A
Sbjct: 65 SFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVG-----SAMMG 119
Query: 165 GLLFAIFQG 173
G+L A+ +G
Sbjct: 120 GILLALIEG 128
>sp|Q6BT35|TIM22_DEBHA Mitochondrial import inner membrane translocase subunit TIM22
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM22 PE=3 SV=1
Length = 182
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG 151
A+NF I V +G+ C ++ LR K D+ + V A +G ++ +G
Sbjct: 101 AKNFGYIGMVYSGVECAIESLRAKHDIYNGVSAGCITGGGLAIRAG 146
>sp|Q4IPI4|ARP4_GIBZE Actin-related protein 4 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=ARP4 PE=3 SV=1
Length = 471
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 133 QSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQ 186
++ V+AAF +G A SLV +GGAN +V A G++ S +G +W S+Q
Sbjct: 184 RTPVLAAFAAGKATSLVIDVGGANTSVTAIHDGMVLKRSIQKS-PVGGIWLSSQ 236
>sp|Q2UAP8|TIM22_ASPOR Mitochondrial import inner membrane translocase subunit tim22
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=tim22 PE=3 SV=1
Length = 184
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSG 143
A+NF ++ + +G C ++ LR K DL +SV++ +G
Sbjct: 111 AKNFGIVGALYSGTECCVEGLRAKNDLSNSVISGCITG 148
>sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Bos taurus GN=TIMM17B PE=2 SV=1
Length = 172
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVS---GMGGANPAVNAFTS 164
+FAV G+ + I C + RLRGKED +S+ + +GA + S M G +A
Sbjct: 65 SFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSVPLAMVG-----SAMMG 119
Query: 165 GLLFAIFQG 173
G+L A+ +G
Sbjct: 120 GILLALIEG 128
>sp|A6ZKU1|SLA1_YEAS7 Actin cytoskeleton-regulatory complex protein SLA1 OS=Saccharomyces
cerevisiae (strain YJM789) GN=SLA1 PE=3 SV=1
Length = 1244
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 202 LDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251
+D Q YT NF R LT+ +P + +S LR + + G + ++ H+ +
Sbjct: 666 VDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKHLDK 715
>sp|P32790|SLA1_YEAST Actin cytoskeleton-regulatory complex protein SLA1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SLA1 PE=1
SV=1
Length = 1244
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 202 LDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251
+D Q YT NF R LT+ +P + +S LR + + G + ++ H+ +
Sbjct: 666 VDVSNCQRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKHLDK 715
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM17 PE=1 SV=1
Length = 158
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLL 167
NF V G+ + C +K +R +ED ++++A F +G A ++ G + ++ T L
Sbjct: 64 NFGVWGGLFSTFDCAVKAVRKREDPWNAIIAGFFTGGALAVRGGW--RHTRNSSITCACL 121
Query: 168 FAIFQGCS--FKIGEMWQS 184
+ +G F+ WQ+
Sbjct: 122 LGVIEGVGLMFQRYAAWQA 140
>sp|Q9C1E8|TIM22_NEUCR Mitochondrial import inner membrane translocase subunit tim-22
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-22 PE=3 SV=2
Length = 194
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 106 ARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGA 144
A+NFA + + +GI C ++ LR K DL + V A +GA
Sbjct: 120 AKNFAKVGALFSGIECGIEGLRAKNDLGNGVAAGCLTGA 158
>sp|Q8C8Y5|SAMD7_MOUSE Sterile alpha motif domain-containing protein 7 OS=Mus musculus
GN=Samd7 PE=2 SV=3
Length = 441
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 169 AIFQGCSFKIGEMWQSTQRPTADDVY-YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLL 227
A+ + CS + W T DDVY + R+ G +Y + FK + TLPLL
Sbjct: 307 ALRENCSLSDIQKW------TVDDVYNFIRSLP-----GCSDYAQVFKDHAIDGETLPLL 355
Query: 228 TDSALR 233
T+ LR
Sbjct: 356 TEQHLR 361
>sp|Q54QM0|TIM22_DICDI Mitochondrial import inner membrane translocase subunit tim22
OS=Dictyostelium discoideum GN=timm22 PE=3 SV=1
Length = 179
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 16 QKAIKDVQFKLKELENGYKSWL--AKQPLP--------VEAAIVTATTA-INGAAIGAFL 64
+K + D K ENG + +L K P ++ IV + G A G
Sbjct: 10 KKILSDNAHKFMFAENGVRDFLPNIKNIAPYNEMQYNLMDNCIVHGVRGMVMGGAFGFLF 69
Query: 65 GVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMK 124
G + + P P + L + F++ Q +G L A++ ++IT V G C ++
Sbjct: 70 GALFTPNSGFTPEPTTPTPLYRQVIDGFKE-QGRSG--LRSAKSLSIITLVYTGTECAIE 126
Query: 125 RLRGKEDLQSSVVAAFGSGAAFS 147
+ RG+ D + + A +GA F+
Sbjct: 127 KARGRTDKLNPIYAGCTTGAVFA 149
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Mus musculus GN=Timm17a PE=2 SV=1
Length = 171
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAV---NAFTS 164
+FAV G+ + I C M ++RGKED +S+ + +GA + +G P +A
Sbjct: 65 SFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNG-----PVAMVGSAAMG 119
Query: 165 GLLFAIFQG 173
G+L A+ +G
Sbjct: 120 GILLALIEG 128
>sp|Q1CZI3|NHAA2_MYXXD Na(+)/H(+) antiporter NhaA 2 OS=Myxococcus xanthus (strain DK 1622)
GN=nhaA2 PE=3 SV=1
Length = 470
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 74 SLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGV 115
S TPP QS+L P+A AP ++ +AG PL + + +G+
Sbjct: 2 STTTPPGQSALPPEAWAPLLRLSRLAGRPLERFLHIEAASGI 43
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Rattus norvegicus GN=Timm17a PE=2 SV=1
Length = 171
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAV---NAFTS 164
+FAV G+ + I C M ++RGKED +S+ + +GA + +G P +A
Sbjct: 65 SFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNG-----PVAMVGSAAMG 119
Query: 165 GLLFAIFQG 173
G+L A+ +G
Sbjct: 120 GILLALIEG 128
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Homo sapiens GN=TIMM17A PE=1 SV=1
Length = 171
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 108 NFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSG---MGGANPAVNAFTS 164
+FAV G+ + I C M ++RGKED +S+ + +GA + +G M G +A
Sbjct: 65 SFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVG-----SAAMG 119
Query: 165 GLLFAIFQG 173
G+L A+ +G
Sbjct: 120 GILLALIEG 128
>sp|Q9LYG1|TI173_ARATH Mitochondrial import inner membrane translocase subunit TIM17-3
OS=Arabidopsis thaliana GN=TIM17-3 PE=2 SV=1
Length = 133
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 109 FAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLF 168
FAV G+ + + R+R KED +S+VA +G S+ G+ V A TS ++F
Sbjct: 66 FAVFGGLLSTFDYALVRIRKKEDPWNSIVAGAATGGVLSIRKGV------VAASTSAVMF 119
Query: 169 AIF 171
F
Sbjct: 120 GFF 122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,620,053
Number of Sequences: 539616
Number of extensions: 4022215
Number of successful extensions: 13107
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 13054
Number of HSP's gapped (non-prelim): 69
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)