Query 025019
Match_columns 259
No_of_seqs 174 out of 595
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 99.9 4E-28 8.8E-33 206.7 4.7 125 44-180 39-165 (168)
2 TIGR00980 3a0801so1tim17 mitoc 99.9 8.9E-23 1.9E-27 176.5 11.4 118 50-185 17-134 (170)
3 TIGR00983 3a0801s02tim23 mitoc 99.9 2E-22 4.4E-27 171.0 11.2 115 46-174 34-148 (149)
4 PF02466 Tim17: Tim17/Tim22/Ti 99.9 1.2E-21 2.7E-26 158.6 11.8 124 45-182 4-128 (128)
5 PTZ00236 mitochondrial import 99.9 2.8E-21 6E-26 166.4 13.8 118 49-184 18-135 (164)
6 KOG1652 Mitochondrial import i 99.8 3.1E-20 6.7E-25 161.2 -0.1 119 42-182 12-131 (183)
7 COG5596 TIM22 Mitochondrial im 99.7 6.1E-18 1.3E-22 147.6 -1.0 158 14-181 14-189 (191)
8 KOG3324 Mitochondrial import i 99.6 2.2E-15 4.9E-20 132.7 7.7 123 45-181 76-198 (206)
9 PF00536 SAM_1: SAM domain (St 99.0 2.2E-10 4.8E-15 82.4 3.6 56 196-251 6-62 (64)
10 cd00166 SAM Sterile alpha moti 98.7 7.6E-09 1.7E-13 72.7 3.0 55 197-251 6-61 (63)
11 PF07647 SAM_2: SAM domain (St 98.6 1.3E-08 2.8E-13 73.4 2.1 55 197-251 8-64 (66)
12 smart00454 SAM Sterile alpha m 98.6 2.9E-08 6.3E-13 70.2 2.7 55 197-251 8-64 (68)
13 KOG4374 RNA-binding protein Bi 98.5 2.9E-08 6.4E-13 89.0 0.7 60 195-254 151-211 (216)
14 KOG4608 Uncharacterized conser 97.4 3E-05 6.6E-10 71.0 0.2 83 98-182 127-209 (270)
15 COG5596 TIM22 Mitochondrial im 97.4 2.2E-05 4.8E-10 69.3 -1.9 76 102-179 78-163 (191)
16 KOG3678 SARM protein (with ste 96.5 0.0059 1.3E-07 61.5 6.6 129 109-251 395-525 (832)
17 PTZ00236 mitochondrial import 93.9 0.91 2E-05 39.7 10.8 124 42-184 14-139 (164)
18 TIGR00980 3a0801so1tim17 mitoc 93.5 0.58 1.3E-05 41.1 8.9 123 42-183 12-136 (170)
19 PF09597 IGR: IGR protein moti 90.4 0.15 3.3E-06 37.3 1.5 49 200-251 3-53 (57)
20 PF02466 Tim17: Tim17/Tim22/Ti 89.8 2.9 6.3E-05 33.5 8.6 27 46-72 1-28 (128)
21 KOG4384 Uncharacterized SAM do 87.5 0.26 5.7E-06 47.7 1.2 55 197-251 217-273 (361)
22 PF10247 Romo1: Reactive mitoc 87.2 0.56 1.2E-05 35.5 2.6 64 46-121 2-67 (67)
23 KOG4096 Uncharacterized conser 84.3 0.85 1.8E-05 35.1 2.4 67 45-122 5-72 (75)
24 KOG1398 Uncharacterized conser 77.3 3.2 6.9E-05 41.2 4.3 48 101-148 298-345 (460)
25 PF05957 DUF883: Bacterial pro 73.2 12 0.00027 28.9 5.9 15 50-64 77-91 (94)
26 TIGR03750 conj_TIGR03750 conju 71.1 16 0.00036 30.1 6.4 64 137-207 32-95 (111)
27 KOG4375 Scaffold protein Shank 66.6 3.8 8.3E-05 38.5 2.0 40 198-237 215-254 (272)
28 PF11990 DUF3487: Protein of u 66.4 24 0.00052 29.3 6.5 64 136-206 34-97 (121)
29 KOG0196 Tyrosine kinase, EPH ( 66.3 2.7 5.8E-05 45.2 1.1 60 192-251 920-981 (996)
30 PF05957 DUF883: Bacterial pro 66.1 18 0.00038 28.0 5.4 50 19-68 40-91 (94)
31 PF03020 LEM: LEM domain; Int 61.7 3.5 7.6E-05 28.6 0.6 12 230-241 13-24 (43)
32 PF13436 Gly-zipper_OmpA: Glyc 56.4 55 0.0012 26.7 6.9 47 130-180 50-96 (118)
33 PF13735 tRNA_NucTran2_2: tRNA 53.2 14 0.0003 30.2 2.9 25 227-251 105-131 (149)
34 PRK10404 hypothetical protein; 52.1 21 0.00045 28.7 3.7 12 56-67 86-97 (101)
35 KOG1170 Diacylglycerol kinase 49.1 15 0.00032 39.8 3.0 57 195-251 1000-1057(1099)
36 KOG3930 Uncharacterized conser 49.0 7.5 0.00016 37.7 0.8 52 200-251 6-63 (389)
37 KOG3791 Predicted RNA-binding 46.8 7.5 0.00016 40.1 0.4 39 200-240 480-518 (569)
38 PLN02975 complex I subunit 45.1 47 0.001 26.9 4.6 35 161-195 58-95 (97)
39 PF10439 Bacteriocin_IIc: Bact 44.0 58 0.0013 23.8 4.7 23 130-152 23-45 (65)
40 PRK10132 hypothetical protein; 43.4 50 0.0011 26.9 4.7 15 53-67 89-103 (108)
41 TIGR01149 mtrG N5-methyltetrah 43.1 84 0.0018 24.1 5.5 53 14-67 9-62 (70)
42 KOG3225 Mitochondrial import i 41.9 57 0.0012 28.8 5.0 28 41-68 41-68 (168)
43 PF12597 DUF3767: Protein of u 40.2 1.3E+02 0.0028 24.8 6.7 56 125-180 33-88 (118)
44 PRK01026 tetrahydromethanopter 40.1 94 0.002 24.2 5.4 54 14-68 12-66 (77)
45 smart00540 LEM in nuclear memb 39.6 15 0.00032 25.6 0.9 12 230-241 13-24 (44)
46 PF05818 TraT: Enterobacterial 39.5 41 0.00089 30.7 4.0 12 165-176 115-126 (215)
47 PF01988 VIT1: VIT family; In 37.9 1.2E+02 0.0025 26.9 6.6 26 230-255 87-112 (213)
48 PRK13731 conjugal transfer sur 37.1 21 0.00045 33.3 1.7 19 130-148 110-128 (243)
49 PF06568 DUF1127: Domain of un 36.5 15 0.00032 24.5 0.5 18 222-239 18-35 (40)
50 PRK10132 hypothetical protein; 35.8 1.4E+02 0.003 24.3 6.2 17 49-65 89-105 (108)
51 KOG0249 LAR-interacting protei 35.7 7.4 0.00016 41.4 -1.5 37 198-234 678-714 (916)
52 KOG4374 RNA-binding protein Bi 34.0 12 0.00025 34.3 -0.4 51 200-250 122-174 (216)
53 PRK10404 hypothetical protein; 33.7 1.6E+02 0.0034 23.7 6.1 17 49-65 83-99 (101)
54 PF12732 YtxH: YtxH-like prote 29.4 57 0.0012 24.1 2.7 21 51-71 2-22 (74)
55 PF03672 UPF0154: Uncharacteri 28.6 48 0.001 24.9 2.1 17 51-67 4-20 (64)
56 KOG1899 LAR transmembrane tyro 28.3 48 0.001 35.2 2.8 44 194-237 624-667 (861)
57 TIGR01992 PTS-IIBC-Tre PTS sys 27.9 1.7E+02 0.0038 29.2 6.6 65 104-175 345-416 (462)
58 TIGR03595 Obg_CgtA_exten Obg f 27.3 49 0.0011 24.6 2.0 39 188-247 26-64 (69)
59 PF09269 DUF1967: Domain of un 27.1 64 0.0014 23.9 2.6 36 191-247 29-64 (69)
60 COG4575 ElaB Uncharacterized c 25.6 2.1E+02 0.0045 23.5 5.5 25 10-34 30-54 (104)
61 PRK00523 hypothetical protein; 24.7 79 0.0017 24.3 2.8 15 85-102 41-56 (72)
62 PF04210 MtrG: Tetrahydrometha 24.6 2.3E+02 0.0051 21.7 5.2 22 14-35 9-30 (70)
63 COG3808 OVP1 Inorganic pyropho 24.4 1.7E+02 0.0036 30.8 5.7 74 131-238 517-593 (703)
64 COG4803 Predicted membrane pro 24.1 69 0.0015 28.2 2.6 55 14-68 12-76 (170)
65 COG2944 Predicted transcriptio 22.8 52 0.0011 26.9 1.5 22 235-256 81-102 (104)
66 PRK09796 PTS system cellobiose 22.1 2.2E+02 0.0048 28.8 6.1 68 103-175 333-406 (472)
67 TIGR00983 3a0801s02tim23 mitoc 21.9 3.5E+02 0.0075 23.2 6.5 35 34-70 28-62 (149)
68 PF07281 INSIG: Insulin-induce 21.3 5.9E+02 0.013 22.7 8.7 65 103-172 48-117 (193)
69 PRK02898 cobalt transport prot 21.2 36 0.00078 27.7 0.3 48 23-70 41-92 (100)
70 PRK02126 ribonuclease Z; Provi 21.0 67 0.0015 30.6 2.2 24 225-248 177-200 (334)
71 PF01024 Colicin: Colicin pore 21.0 1.4E+02 0.0031 26.8 4.1 24 103-126 89-112 (187)
72 PF00465 Fe-ADH: Iron-containi 20.2 1.6E+02 0.0035 27.8 4.6 49 191-242 311-359 (366)
73 PF08560 DUF1757: Protein of u 20.1 4.8E+02 0.011 22.5 7.0 69 135-206 39-112 (155)
74 KOG4403 Cell surface glycoprot 20.1 92 0.002 31.8 2.9 34 195-228 137-171 (575)
75 PF14019 DUF4235: Protein of u 20.1 4E+02 0.0086 20.2 6.3 48 135-182 9-63 (78)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4e-28 Score=206.68 Aligned_cols=125 Identities=19% Similarity=0.292 Sum_probs=109.6
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCC-CCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHH
Q 025019 44 VEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPP-QSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (259)
Q Consensus 44 ~E~cv-kt~~g~v~Gg~lG~~~G~~~~s~~~~~~~p~~-~~~~~~q~~~~~k~~~~~~~~~~~~a~nFAvvGgvysg~ec 121 (259)
+++|. |++.++|+|+++|+.||+|.++++.+..+|.. ..++++|+ +|+ |+.+++++++|||++|++|+++||
T Consensus 39 ~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~---~kd---Mg~r~~s~~knF~~iGlvfsg~Ec 112 (168)
T KOG3225|consen 39 ENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQV---AKD---MGQRSGSYAKNFAIIGLVFSGVEC 112 (168)
T ss_pred hcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHH---HHH---HHhhhcchhhhhhhhhhhehhHHH
Confidence 34898 99999999999999999999999865222211 12345555 666 889999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 025019 122 VMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGE 180 (259)
Q Consensus 122 ~ie~~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~ 180 (259)
++|++|.|+||+|++++||+||+.++.++|| ++++.+|++|++||++|+++-+
T Consensus 113 ~iE~~RAK~D~~NgaiaG~vtGg~l~~raGp------~a~~~G~agfa~fS~~id~y~~ 165 (168)
T KOG3225|consen 113 LIESFRAKSDWYNGAIAGCVTGGSLGYRAGP------KAAAIGCAGFAAFSAAIDKYMR 165 (168)
T ss_pred HHHHHHhhhchhcceeeeeeeccchhhcccc------hhhhhchhHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999998 9999999999999999998754
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.89 E-value=8.9e-23 Score=176.52 Aligned_cols=118 Identities=22% Similarity=0.238 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHHhhcc
Q 025019 50 TATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGK 129 (259)
Q Consensus 50 t~~g~v~Gg~lG~~~G~~~~s~~~~~~~p~~~~~~~~q~~~~~k~~~~~~~~~~~~a~nFAvvGgvysg~ec~ie~~RgK 129 (259)
...++.+|.+.|.+++++.+..+.+ . .++++..++. +..+.++++++||+||++|+++||+++++|+|
T Consensus 17 ~G~af~~G~~~G~~~g~~~G~rnsp----~-----g~rl~g~l~a---v~~rap~~g~~Fav~g~lys~~ec~i~~~R~K 84 (170)
T TIGR00980 17 FGGAFAMGTIGGSIFQAFKGFRNSP----K-----GEKLVGAMRA---IKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKK 84 (170)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCC----c-----cchhhHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455556666666666665443321 1 2355666664 56778899999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 025019 130 EDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQST 185 (259)
Q Consensus 130 ~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~~f~~~ 185 (259)
||+||+++|||+||++|++++|+ ++++.+|+++++|.++|+.+|-.++-+
T Consensus 85 eD~~NsiiAG~~TGa~l~~r~G~------~a~~~~aa~gg~~la~ie~~g~~~~~~ 134 (170)
T TIGR00980 85 EDPWNSIISGFLTGAALAVRGGP------RAMRGSAILGACILAVIEGVGLVLTRW 134 (170)
T ss_pred cchHHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999997 999999999999999999998776443
No 3
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.88 E-value=2e-22 Score=171.01 Aligned_cols=115 Identities=23% Similarity=0.223 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHH
Q 025019 46 AAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKR 125 (259)
Q Consensus 46 ~cvkt~~g~v~Gg~lG~~~G~~~~s~~~~~~~p~~~~~~~~q~~~~~k~~~~~~~~~~~~a~nFAvvGgvysg~ec~ie~ 125 (259)
.|.+++.++++|.++|+++|++.+..+.+ + ..+.+.++...+++ ++.+..++|++||+|+++|+++||.++.
T Consensus 34 ~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~----~-~~~~k~rln~~ln~---~~~~g~~~G~~~g~~g~lys~~e~~i~~ 105 (149)
T TIGR00983 34 LCFGTGTCYLTGLAIGALNGLRLGLKETQ----S-MPWTKLRLNQILNM---VTRRGPFWGNTLGILALVYNGINSIIEA 105 (149)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHhhCC----C-CCcHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999887542 1 12346688888886 6788889999999999999999999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHH
Q 025019 126 LRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGC 174 (259)
Q Consensus 126 ~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsga 174 (259)
+|+|||+||+++|||+||++++.++|+ ++++.+|++.++++++
T Consensus 106 ~R~k~D~~Nsv~AGa~TGal~~~~~G~------r~~~~g~~~G~~l~~~ 148 (149)
T TIGR00983 106 TRGKHDDFNSVAAGALTGALYKSTRGL------RGMARSGALGATAAGV 148 (149)
T ss_pred HhccchhhHhHHHHHHHHHHHHhccCh------HHHHHHhHHHHHHhhc
Confidence 999999999999999999999999997 9999999988887764
No 4
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.87 E-value=1.2e-21 Score=158.55 Aligned_cols=124 Identities=29% Similarity=0.428 Sum_probs=101.3
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHH
Q 025019 45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVM 123 (259)
Q Consensus 45 E~cv-kt~~g~v~Gg~lG~~~G~~~~s~~~~~~~p~~~~~~~~q~~~~~k~~~~~~~~~~~~a~nFAvvGgvysg~ec~i 123 (259)
+.|+ .++.+++.|.++|++.+.+..... ++...+.++++...++. ++.....++.+||.++++|+++||.+
T Consensus 4 ~~~~~~~~~g~~~G~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~y~~~~~~l 75 (128)
T PF02466_consen 4 ERILDSTGKGFVAGAVFGGFIGAISAFTR-----PPRGSPLRPRLRSILNA---VGRRGPRHGARFGSFGGLYSGIECAL 75 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cccCCcHhHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3344 777777777777777777754211 11112346677888876 66777789999999999999999999
Q ss_pred HHhhcccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025019 124 KRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMW 182 (259)
Q Consensus 124 e~~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~~f 182 (259)
+++|+|||+||+++||++||++++++.|+ +.++.+++++++++++++++++++
T Consensus 76 ~~~R~k~D~~N~~~aG~~aGa~~~~~~g~------~~~~~~~~~~a~~~~~~~~~~~~~ 128 (128)
T PF02466_consen 76 ERLRGKDDPWNSAIAGAAAGAVLGLRSGP------RGMASGAALGAAFAAAVEYYGRMP 128 (128)
T ss_pred HHhhcccccchhHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999986 999999999999999999998864
No 5
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.86 E-value=2.8e-21 Score=166.40 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHHhhc
Q 025019 49 VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRG 128 (259)
Q Consensus 49 kt~~g~v~Gg~lG~~~G~~~~s~~~~~~~p~~~~~~~~q~~~~~k~~~~~~~~~~~~a~nFAvvGgvysg~ec~ie~~Rg 128 (259)
....++.+|.+.|.+++++.+..+.+ . .+++...++. +..+.++++++||+||++|+++||+++++|+
T Consensus 18 d~G~af~~G~vgG~~~~~~~G~rnsp----~-----g~rl~g~l~~---~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~ 85 (164)
T PTZ00236 18 DMGGAFSMGCIGGFIWHFLKGMRNSP----K-----GERFSGGFYL---LRKRAPILGGNFAIWGGLFSTFDCTLQYLRG 85 (164)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhCC----C-----cchHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34456666666666666666554432 1 2345555554 5667888999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 025019 129 KEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQS 184 (259)
Q Consensus 129 K~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~~f~~ 184 (259)
|||+||+++|||+||++|++++|+ ++++.++++.+++.++|+.++-.++-
T Consensus 86 K~D~~Nsi~AG~~TGa~l~~r~G~------~~~~~~a~~Gg~~~~~ie~~~i~~~~ 135 (164)
T PTZ00236 86 KEDHWNAIASGFFTGGVLAIRGGW------RSAVRNAIFGGILLGIIELVSIGMNR 135 (164)
T ss_pred cCchHHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 65555555555555555555544433
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.1e-20 Score=161.18 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=97.1
Q ss_pred chhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHH
Q 025019 42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGIS 120 (259)
Q Consensus 42 ~~~E~cv-kt~~g~v~Gg~lG~~~G~~~~s~~~~~~~p~~~~~~~~q~~~~~k~~~~~~~~~~~~a~nFAvvGgvysg~e 120 (259)
+.+++|- +.+++.+.|.++.++-|..++.... .....++. ...+....|++||+||++||.++
T Consensus 12 riv~d~g~afamg~igG~~f~~ikG~~nap~G~-------------r~~gg~~a---v~~~ap~~ggsFAvwgglfSt~d 75 (183)
T KOG1652|consen 12 RIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGA-------------RLVGGISA---VKMRAPQSGGSFAVWGGLFSTVD 75 (183)
T ss_pred eeeccccchhhhcccccceeeeeeeeecCCccc-------------ccccchhh---hhccCcccccceeeeechhhHHH
Confidence 4678888 8889999998888888877754332 11112211 22345568999999999999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025019 121 CVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMW 182 (259)
Q Consensus 121 c~ie~~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~~f 182 (259)
|++..+|+|||.||++++||+||++|+.+.|+ ++++.+|+.|+++.+.++-++..+
T Consensus 76 C~Lv~~R~KeDpwNsivsGa~TGg~La~r~g~------~a~~~sa~~~g~~lamieg~g~~~ 131 (183)
T KOG1652|consen 76 CALVAIRKKEDPWNSIVSGAATGGLLAARGGP------KAMLTSAITGGLLLAMIEGLGIQV 131 (183)
T ss_pred HHHHHHhcccchHHHHHHHhhccceeeccccH------HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999997 899999999999999998887765
No 7
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=6.1e-18 Score=147.62 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=130.3
Q ss_pred CchhhHHHHHHHHHHhHHHHHHHHHhCCchhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCC--------------
Q 025019 14 LPQKAIKDVQFKLKELENGYKSWLAKQPLPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTP-------------- 78 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~q~~~~E~cv-kt~~g~v~Gg~lG~~~G~~~~s~~~~~~~p-------------- 78 (259)
|.+|+-+.++.. +.=..+.+.........-++|+ +++++.+.|+.+|...|.+..++.+..+..
T Consensus 14 ~s~~~~~~lS~~-e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl 92 (191)
T COG5596 14 PSPNAYNILSPE-ERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGL 92 (191)
T ss_pred CCCCcccccChh-hcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccce
Confidence 334555666664 3335566677777888889999 999999999999999999998877411110
Q ss_pred ---CCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhccCCCCC
Q 025019 79 ---PPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGA 155 (259)
Q Consensus 79 ---~~~~~~~~q~~~~~k~~~~~~~~~~~~a~nFAvvGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~ 155 (259)
....+++.|++.++++ +..+++..|+|||++|..|++++|+|+.+|+|||+.|++.+|++||+++..+.|+
T Consensus 93 ~~~i~~~~~r~q~~~~~~n---~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~--- 166 (191)
T COG5596 93 FSTIDCTPFRLQLKEQLNN---AGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGP--- 166 (191)
T ss_pred eeccccchHHHHHhhcccc---ccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccc---
Confidence 1113467788899988 6788889999999999999999999999999999999999999999999999997
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhh
Q 025019 156 NPAVNAFTSGLLFAIFQGCSFKIGEM 181 (259)
Q Consensus 156 ~~~~aai~gga~fAafsgai~~~g~~ 181 (259)
+++..++++|++||+++.....+
T Consensus 167 ---qa~~~~~a~~aa~s~~~~~~~~~ 189 (191)
T COG5596 167 ---QAMPMGGAGFAAFSAGITLAMKS 189 (191)
T ss_pred ---cccccCccchhhhhhhHHhhhhc
Confidence 99999999999999999876554
No 8
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.2e-15 Score=132.67 Aligned_cols=123 Identities=19% Similarity=0.148 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHHHH
Q 025019 45 EAAIVTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCVMK 124 (259)
Q Consensus 45 E~cvkt~~g~v~Gg~lG~~~G~~~~s~~~~~~~p~~~~~~~~q~~~~~k~~~~~~~~~~~~a~nFAvvGgvysg~ec~ie 124 (259)
..|+.|+.+|+.|.++|++.|++.+..+.+ +..+.++++.++++. ...+...+|++.++++.+|+++|+.|+
T Consensus 76 ~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e-----~~~~~Klr~nrILN~---~t~~G~~~gN~lG~laL~YsaiesgI~ 147 (206)
T KOG3324|consen 76 NLTFGTGWAYLTGSAIGAFNGLILGLKNTE-----NGASGKLRLNRILNS---VTRRGRFWGNTLGSLALMYSAIESGIE 147 (206)
T ss_pred hhheeccchhccchhhhhHHHHHHhhhcCC-----CCCccchhHHHHhhh---ccccccccccchhHHHHHHHHHHHHHH
Confidence 345699999999999999999999876542 233457777777775 233344599999999999999999999
Q ss_pred HhhcccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhh
Q 025019 125 RLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEM 181 (259)
Q Consensus 125 ~~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~~ 181 (259)
..|++||++|+++||++||+++....|+ +++..++++.+..+++.....+.
T Consensus 148 ~~R~~dd~lnsv~AGalTGalyrs~~Gl------r~~av~ga~g~~aa~aw~l~k~~ 198 (206)
T KOG3324|consen 148 ATRGKDDDLNSVAAGALTGALYRSTRGL------RAAAVAGAVGGTAAAAWTLGKRI 198 (206)
T ss_pred HhhccccchhhhhhhhhhhhhhhcCCCc------hHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999996 89999988888888777544433
No 9
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.02 E-value=2.2e-10 Score=82.41 Aligned_cols=56 Identities=32% Similarity=0.534 Sum_probs=52.1
Q ss_pred HHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCC-CchHHHHHhhhh
Q 025019 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (259)
Q Consensus 196 ~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~-gpr~~il~~~~~ 251 (259)
.-...||+.+||++|..+|+++.++..+|..||+++|++++|+. |||.+|+.+|++
T Consensus 6 ~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~ 62 (64)
T PF00536_consen 6 EDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQK 62 (64)
T ss_dssp HHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999988 999999999974
No 10
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=98.73 E-value=7.6e-09 Score=72.71 Aligned_cols=55 Identities=35% Similarity=0.541 Sum_probs=52.3
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCC-CchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~-gpr~~il~~~~~ 251 (259)
....||+.+|+++|...|++..+|...|+.+|+++|++++|+. |+|.+|+.+|++
T Consensus 6 ~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~ 61 (63)
T cd00166 6 DVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQK 61 (63)
T ss_pred HHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999997 999999999875
No 11
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=98.64 E-value=1.3e-08 Score=73.45 Aligned_cols=55 Identities=31% Similarity=0.489 Sum_probs=52.3
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCC-CcccCCChhhhhcCCC-CCCchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLTD-STLPLLTDSALRDVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~-~~l~~~~~~~l~~~~i-p~gpr~~il~~~~~ 251 (259)
....||+++||++|..+|+.-.++. ..|+.||+++|+++|| ++|+|.+||++|++
T Consensus 8 ~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~ 64 (66)
T PF07647_consen 8 DVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQE 64 (66)
T ss_dssp HHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999 9999999999999999 89999999999974
No 12
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=98.59 E-value=2.9e-08 Score=70.24 Aligned_cols=55 Identities=33% Similarity=0.570 Sum_probs=52.2
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCCCcccCCC-hhhhhcCCC-CCCchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLT-DSALRDVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~-~~~l~~~~i-p~gpr~~il~~~~~ 251 (259)
....+|+.+|+++|..+|++..++..+|..++ +++|++++| ++|+|++|++.|+.
T Consensus 8 ~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~ 64 (68)
T smart00454 8 SVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQK 64 (68)
T ss_pred HHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999 999999999 99999999999975
No 13
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=98.49 E-value=2.9e-08 Score=88.99 Aligned_cols=60 Identities=33% Similarity=0.339 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCC-CCCchHHHHHhhhhCcc
Q 025019 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQRDPE 254 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~i-p~gpr~~il~~~~~~~~ 254 (259)
.+-...+|..|||.+|.+.|...++++++|++||+++|++++| +.|||.+|+++|.....
T Consensus 151 ~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~~r~ 211 (216)
T KOG4374|consen 151 TEGVLMELGILGLGAYWKMFEAIEVDMDNLRLLTEEDLKDMGINSVGPRKKILCAIGKLRR 211 (216)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccchhhhhcccccCcchhhhhhhhcccc
Confidence 4456789999999999999999999999999999999999999 99999999999976544
No 14
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=3e-05 Score=71.02 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=64.3
Q ss_pred hcCCcHHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 025019 98 VAGGPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFK 177 (259)
Q Consensus 98 ~~~~~~~~a~nFAvvGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~ 177 (259)
+.++++..|-..|++.+.|-++...+..+|+|+|.||=++||.+||+++.+.-|.++ .+++.+.|+.+.+.+++....
T Consensus 127 farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g--~aa~vilG~~lG~tv~~~l~l 204 (270)
T KOG4608|consen 127 FARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRG--LAAGVILGALLGTTVGGLLML 204 (270)
T ss_pred HhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHH--HhhcceeehhhcchHHHHHHH
Confidence 456677788889999999999999999999999999999999999999988877522 235555565555566665555
Q ss_pred hhhhh
Q 025019 178 IGEMW 182 (259)
Q Consensus 178 ~g~~f 182 (259)
+....
T Consensus 205 ~q~a~ 209 (270)
T KOG4608|consen 205 FQKAS 209 (270)
T ss_pred HHHHh
Confidence 55443
No 15
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=2.2e-05 Score=69.34 Aligned_cols=76 Identities=21% Similarity=0.279 Sum_probs=60.9
Q ss_pred cHHHHHHHH-HHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHH---------HHHHHHHH
Q 025019 102 PLVQARNFA-VITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFT---------SGLLFAIF 171 (259)
Q Consensus 102 ~~~~a~nFA-vvGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~---------gga~fAaf 171 (259)
....+.||| +||++++.++|+.+++|.+.|.||....|++||..++..... .+.+.+.|. +++.+++|
T Consensus 78 ~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~--y~~~ns~I~~~r~k~d~~~~iaaG~~ 155 (191)
T COG5596 78 VHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLI--YAGINSIITALRAKHDIANAIAAGAF 155 (191)
T ss_pred ccccCccccccccceeeccccchHHHHHhhccccccccccccccccceeeee--cccchhhhhhhhhccccchhhhhhhh
Confidence 345788999 999999999999999999999999999999999999987765 333456665 66666777
Q ss_pred HHHHHHhh
Q 025019 172 QGCSFKIG 179 (259)
Q Consensus 172 sgai~~~g 179 (259)
.|+..+.-
T Consensus 156 TGa~~~~~ 163 (191)
T COG5596 156 TGAALASS 163 (191)
T ss_pred hhHHHHhh
Confidence 66665543
No 16
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.51 E-value=0.0059 Score=61.54 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=86.1
Q ss_pred HHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 025019 109 FAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQRP 188 (259)
Q Consensus 109 FAvvGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~~f~~~~~~ 188 (259)
--.+|+.|-+.|.+++++-+|-|+..-+ ||+-+++.=-.+++-+.+.+..-++--+=.-+=+++.+..-+|.
T Consensus 395 Aq~i~AF~l~~EAaIKs~Q~K~kVFseI------GAIQaLKevaSS~d~vaakfAseALtviGEEVP~~l~~qVPgWt-- 466 (832)
T KOG3678|consen 395 AQCIGAFYLCAEAAIKSLQGKTKVFSEI------GAIQALKEVASSPDEVAAKFASEALTVIGEEVPYKLAQQVPGWT-- 466 (832)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHHHHH------HHHHHHHHHhcCchHHHHHHHHHHHHHhccccChhhhccCCCcc--
Confidence 3468999999999999999999988765 44544442211233233322221111111111123333333332
Q ss_pred CchhHHHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhh-cCCCCCC-chHHHHHhhhh
Q 025019 189 TADDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALR-DVRIPPG-PRLLILDHIQR 251 (259)
Q Consensus 189 ~~~d~~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~-~~~ip~g-pr~~il~~~~~ 251 (259)
-+-...|+++.|+++|-..|.|-+++-+-|--||+.+|+ ||+.--| -|++.|.+++.
T Consensus 467 ------~AdVQ~WvkkIGFeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqt 525 (832)
T KOG3678|consen 467 ------CADVQYWVKKIGFEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQT 525 (832)
T ss_pred ------hHHHHHHHHHhCHHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 344567999999999999999999999999999999998 7887766 57888877764
No 17
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=93.88 E-value=0.91 Score=39.70 Aligned_cols=124 Identities=11% Similarity=0.008 Sum_probs=82.0
Q ss_pred chhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhh-hhhhhcCCcHHHHHHHHHHHHHhHhH
Q 025019 42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQ-QVQAVAGGPLVQARNFAVITGVNAGI 119 (259)
Q Consensus 42 ~~~E~cv-kt~~g~v~Gg~lG~~~G~~~~s~~~~~~~p~~~~~~~~q~~~~~k-~~~~~~~~~~~~a~nFAvvGgvysg~ 119 (259)
++.++|- .-.+|++.|++.+++-| +.++-...- ....++.++ ++.+++ .+.|.--+++.++.+.+
T Consensus 14 ri~dd~G~af~~G~vgG~~~~~~~G-~rnsp~g~r---------l~g~l~~~~~rap~~g---~~FAv~G~~ys~~ec~~ 80 (164)
T PTZ00236 14 RIIEDMGGAFSMGCIGGFIWHFLKG-MRNSPKGER---------FSGGFYLLRKRAPILG---GNFAIWGGLFSTFDCTL 80 (164)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHH-HHhCCCcch---------HHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHH
Confidence 4678888 45555555555555445 454433321 223344444 322233 34667778888888888
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 025019 120 SCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQS 184 (259)
Q Consensus 120 ec~ie~~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~~f~~ 184 (259)
+..-.+-=-.+-+.-..+.|.+-++--+.++-. .+++.+|+++|++.++-..+.+.+.-
T Consensus 81 ~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~------~~a~~Gg~~~~~ie~~~i~~~~~~~~ 139 (164)
T PTZ00236 81 QYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAV------RNAIFGGILLGIIELVSIGMNRRQMR 139 (164)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHhcChHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888777767888999999999988777777663 78999999988888777666655543
No 18
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=93.48 E-value=0.58 Score=41.09 Aligned_cols=123 Identities=11% Similarity=0.022 Sum_probs=90.0
Q ss_pred chhhHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhh-hhhhhhhhcCCcHHHHHHHHHHHHHhHhH
Q 025019 42 LPVEAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVA-PFQQVQAVAGGPLVQARNFAVITGVNAGI 119 (259)
Q Consensus 42 ~~~E~cv-kt~~g~v~Gg~lG~~~G~~~~s~~~~~~~p~~~~~~~~q~~~-~~k~~~~~~~~~~~~a~nFAvvGgvysg~ 119 (259)
++.++|. ...+|.+.|++.|++-|+.+......+ ...++ +.+++. .-....+.--+++.++.+.+
T Consensus 12 r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl----------~g~l~av~~rap---~~g~~Fav~g~lys~~ec~i 78 (170)
T TIGR00980 12 RILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKL----------VGAMRAIKTRAP---VLGGNFAVWGGLFSTIDCAV 78 (170)
T ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchh----------hHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHH
Confidence 4678888 778888888888888888776444321 22333 333322 23344777788889999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 025019 120 SCVMKRLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQ 183 (259)
Q Consensus 120 ec~ie~~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~~f~ 183 (259)
+..-++-=-.+-+.-..+.|++-++-=+.++- +..++.+++++++|.++-..+.+...
T Consensus 79 ~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~------~~~aa~gg~~la~ie~~g~~~~~~~~ 136 (170)
T TIGR00980 79 VAIRKKEDPWNSIISGFLTGAALAVRGGPRAM------RGSAILGACILAVIEGVGLVLTRWAA 136 (170)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhccChHHH------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88777766688899999999988887776665 48899999999999999888766543
No 19
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=90.41 E-value=0.15 Score=37.26 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=36.0
Q ss_pred HHHhhhC--chhhHHhhhhccCCCCcccCCChhhhhcCCCCCCchHHHHHhhhh
Q 025019 200 GMLDKLG--LQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251 (259)
Q Consensus 200 ~~l~~lg--~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~~~~~ 251 (259)
.||+..| .++|..-|...- +.|--++-..||+.|||+==|..||.+.++
T Consensus 3 tFL~~IGR~~~~~~~kf~~~w---~~lf~~~s~~LK~~GIp~r~RryiL~~~ek 53 (57)
T PF09597_consen 3 TFLKLIGRGCEEHAEKFESDW---EKLFTTSSKQLKELGIPVRQRRYILRWREK 53 (57)
T ss_pred HHHHHHcccHHHHHHHHHHHH---HHHHhcCHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4666666 566665554422 445557778999999999999999998876
No 20
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=89.76 E-value=2.9 Score=33.55 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.9
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhhccc
Q 025019 46 AAI-VTATTAINGAAIGAFLGVMTQDLT 72 (259)
Q Consensus 46 ~cv-kt~~g~v~Gg~lG~~~G~~~~s~~ 72 (259)
+|. ++..+.+.|+++|+++|.+....+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~ 28 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAIS 28 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577 899999999999999999998864
No 21
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=87.49 E-value=0.26 Score=47.73 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=49.1
Q ss_pred HHHHHHhhhCchhhHHh-hhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKN-FKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~-~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
--..||..+|||+|... ++.|.=|-+++-.+++++|-+++|= |+=|.+||..|+.
T Consensus 217 ~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~ 273 (361)
T KOG4384|consen 217 SLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVEL 273 (361)
T ss_pred HHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35689999999999988 5777778999999999999999994 8999999999986
No 22
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=87.24 E-value=0.56 Score=35.46 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=35.4
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhhhcccC-CCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHH
Q 025019 46 AAI-VTATTAINGAAIGAFLGVMTQDLTS-SLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISC 121 (259)
Q Consensus 46 ~cv-kt~~g~v~Gg~lG~~~G~~~~s~~~-~~~~p~~~~~~~~q~~~~~k~~~~~~~~~~~~a~nFAvvGgvysg~ec 121 (259)
+|. +--+|+.+|+.+|..+|.+.+..+. ....++ + .+++. ++.-+...+..|+.+=++=+.++|
T Consensus 2 sc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~-----~-~~~~~------lg~~~l~sg~tFG~Fm~iGs~IRc 67 (67)
T PF10247_consen 2 SCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARG-----R-GLMRT------LGKYMLGSGATFGFFMSIGSVIRC 67 (67)
T ss_pred cHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCC-----c-chHhH------HhHHHhcchhHHHHHHhhhccccC
Confidence 577 6677777777777777777765543 111122 1 22222 223344456677776665555544
No 23
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.31 E-value=0.85 Score=35.08 Aligned_cols=67 Identities=21% Similarity=0.368 Sum_probs=41.1
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCchhhhhhhhhhhhhcCCcHHHHHHHHHHHHHhHhHHHH
Q 025019 45 EAAI-VTATTAINGAAIGAFLGVMTQDLTSSLPTPPPQSSLNPDAVAPFQQVQAVAGGPLVQARNFAVITGVNAGISCV 122 (259)
Q Consensus 45 E~cv-kt~~g~v~Gg~lG~~~G~~~~s~~~~~~~p~~~~~~~~q~~~~~k~~~~~~~~~~~~a~nFAvvGgvysg~ec~ 122 (259)
.+|+ |--++..+|+++|...|.+.+.... ++.-+. -..+++. ++.-+...+..|+++=++=++++|.
T Consensus 5 pSc~dKikmG~~mG~avG~a~G~lfGgf~~-lR~g~~----g~~~vr~------iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 5 PSCFDKIKMGLMMGGAVGGATGALFGGFAA-LRYGPR----GRGLVRT------IGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred ccHHHHHHHHHHHHhhhhhhhhhhccchhh-eeecCC----hhHHHHH------HhHHHHhccchhhhhhhhhhheecC
Confidence 4788 7777777777777777777665543 111110 1122222 3344556778899888888888875
No 24
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.34 E-value=3.2 Score=41.20 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=41.1
Q ss_pred CcHHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhh
Q 025019 101 GPLVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSL 148 (259)
Q Consensus 101 ~~~~~a~nFAvvGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~l~~ 148 (259)
.....+.-.|.+-++|.++.|++.+++-+||..|+++||++++..+..
T Consensus 298 enlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmf 345 (460)
T KOG1398|consen 298 ENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMF 345 (460)
T ss_pred ccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeee
Confidence 344566778889999999999999999999999999999998866543
No 25
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=73.15 E-value=12 Score=28.86 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 025019 50 TATTAINGAAIGAFL 64 (259)
Q Consensus 50 t~~g~v~Gg~lG~~~ 64 (259)
.+++++.|+++|.++
T Consensus 77 vgiAagvG~llG~Ll 91 (94)
T PF05957_consen 77 VGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 26
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=71.14 E-value=16 Score=30.06 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCchhHHHHHHHHHHhhhCc
Q 025019 137 VAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQRPTADDVYYARTRGMLDKLGL 207 (259)
Q Consensus 137 iAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~~f~~~~~~~~~d~~y~r~~~~l~~lg~ 207 (259)
++|++.|..++.-.|. -+++-+|++.+.+.+++ ..+..++..+.-.+|--.|-+....+.++|+
T Consensus 32 ~~gl~~g~~l~~~~~~------w~~~p~~~lig~~l~v~-~gg~~l~rlKRGrPe~yl~r~l~~~~~~~~l 95 (111)
T TIGR03750 32 AAGLVLGLLLALLAGP------WALIPTGALLGPILVVL-IGGKLLARLKRGKPEGYLYRKLEWKLARLGL 95 (111)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HhHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Confidence 4555555555555554 44555555555544433 4466666666666676678888888888876
No 27
>KOG4375 consensus Scaffold protein Shank and related SAM domain proteins [Signal transduction mechanisms]
Probab=66.58 E-value=3.8 Score=38.47 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=38.1
Q ss_pred HHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCC
Q 025019 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI 237 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~i 237 (259)
...||.+|+|-.|...|+.-.|+-..||+|+.+++++++.
T Consensus 215 V~dWLssl~L~E~~~aF~d~eIdG~hLp~l~k~df~~LGV 254 (272)
T KOG4375|consen 215 VNDWLSSLHLIEYDDAFHDIEIDGKHLPLLRKLDFRGLGV 254 (272)
T ss_pred HHHHHHhhhhhhcchhhhhcccccchhhhcchhhhhcccc
Confidence 5689999999999999999999999999999999999876
No 28
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=66.42 E-value=24 Score=29.32 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCchhHHHHHHHHHHhhhC
Q 025019 136 VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQRPTADDVYYARTRGMLDKLG 206 (259)
Q Consensus 136 iiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~~f~~~~~~~~~d~~y~r~~~~l~~lg 206 (259)
.++|++.|..++.-.|. -+++-+|+..+.+.+++ ..+..++-.+.-.+|--.|.+....|.+.|
T Consensus 34 ~~~g~~~gl~la~~~g~------~a~~pt~~ll~~~~~v~-~gg~~l~rlKRGKP~~yl~r~l~~~l~~~g 97 (121)
T PF11990_consen 34 FVAGLVVGLPLALLTGW------WAMIPTGALLGPILGVF-VGGKLLARLKRGKPEGYLYRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH-HhHHHHHHHHcCCchhHHHHHHHHHHHHhc
Confidence 44566667777777775 44555555555555444 335556555655566667888888888876
No 29
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=66.34 E-value=2.7 Score=45.20 Aligned_cols=60 Identities=18% Similarity=0.290 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHhhhCchhhHHhhhh-ccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 192 DVYYARTRGMLDKLGLQNYTKNFKR-GLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 192 d~~y~r~~~~l~~lg~~~y~~~~~~-~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
..-|-..-.||+..+++.|..+|.+ |.-+.+.+.-+|-+||..++|- +|.-++||.+||.
T Consensus 920 ~~~f~sv~~WL~aIkm~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~ 981 (996)
T KOG0196|consen 920 FTPFRSVGDWLEAIKMGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQA 981 (996)
T ss_pred CcccCCHHHHHHHhhhhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHH
Confidence 3447778899999999999999976 5667888999999999999997 8999999999975
No 30
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=66.06 E-value=18 Score=27.98 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCchhhHHH--HHHHHHHHHHHHHHHHHhhh
Q 025019 19 IKDVQFKLKELENGYKSWLAKQPLPVEAAI--VTATTAINGAAIGAFLGVMT 68 (259)
Q Consensus 19 ~~~~~~~~~~~~~~~~~w~~~q~~~~E~cv--kt~~g~v~Gg~lG~~~G~~~ 68 (259)
+++.+.++++...+.+...+......+..| +=..+.+...++|+++|.+.
T Consensus 40 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG~llG~Ll 91 (94)
T PF05957_consen 40 LDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGIAAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444334444555 45677778888888888775
No 31
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=61.67 E-value=3.5 Score=28.61 Aligned_cols=12 Identities=50% Similarity=1.005 Sum_probs=6.5
Q ss_pred hhhhcCCCCCCc
Q 025019 230 SALRDVRIPPGP 241 (259)
Q Consensus 230 ~~l~~~~ip~gp 241 (259)
+.|++.|++|||
T Consensus 13 ~~L~~~G~~~GP 24 (43)
T PF03020_consen 13 EELREYGEPPGP 24 (43)
T ss_dssp HCCCCCT-S---
T ss_pred HHHHHcCCCCCC
Confidence 467889999999
No 32
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=56.37 E-value=55 Score=26.75 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=25.9
Q ss_pred cchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 025019 130 EDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGE 180 (259)
Q Consensus 130 ~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~ 180 (259)
++.....+.|++.|++++...|..+ ..++.+++..+++-++.-....
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~----~ga~~GAa~Ga~~G~~~g~~~~ 96 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNG----RGAAIGAAAGAAVGAAAGAARG 96 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCc----cchHHHHHHHHHHHHHhhhhhh
Confidence 4455556677777888887666422 3455555554554444433333
No 33
>PF13735 tRNA_NucTran2_2: tRNA nucleotidyltransferase domain 2 putative; PDB: 1MIY_A 1MIV_B 1MIW_B.
Probab=53.17 E-value=14 Score=30.20 Aligned_cols=25 Identities=28% Similarity=0.609 Sum_probs=17.0
Q ss_pred CChhhhhc-CCCCCCchH-HHHHhhhh
Q 025019 227 LTDSALRD-VRIPPGPRL-LILDHIQR 251 (259)
Q Consensus 227 ~~~~~l~~-~~ip~gpr~-~il~~~~~ 251 (259)
+|=.+|.+ +++||||.. .||++|..
T Consensus 105 I~G~DLi~~lg~~pGp~iG~iL~~l~~ 131 (149)
T PF13735_consen 105 INGNDLIEALGIKPGPWIGEILERLLE 131 (149)
T ss_dssp S-HHHHHHHHT--SSCHHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 78888999 799999997 46666644
No 34
>PRK10404 hypothetical protein; Provisional
Probab=52.07 E-value=21 Score=28.72 Aligned_cols=12 Identities=50% Similarity=0.916 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhh
Q 025019 56 NGAAIGAFLGVM 67 (259)
Q Consensus 56 ~Gg~lG~~~G~~ 67 (259)
.+.++|+++|++
T Consensus 86 iaagvGlllG~L 97 (101)
T PRK10404 86 VGAAVGLVLGLL 97 (101)
T ss_pred HHHHHHHHHHHH
Confidence 444455665555
No 35
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=49.13 E-value=15 Score=39.83 Aligned_cols=57 Identities=25% Similarity=0.400 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
-+-...||+.++|-+|-..|.|--+--..|.+|--.+|+|+++- -|=-++||..|+.
T Consensus 1000 seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDLkdlgvtkVGhvkril~aIkd 1057 (1099)
T KOG1170|consen 1000 SEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDLKDLGVTKVGHVKRILSAIKD 1057 (1099)
T ss_pred HHHHHHHHhccccchhhhhhhccCcccceeeecCcccccccchhhhHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999984 5888999998864
No 36
>KOG3930 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.05 E-value=7.5 Score=37.69 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=44.8
Q ss_pred HHHhhhCc-----hhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 200 GMLDKLGL-----QNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 200 ~~l~~lg~-----~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
+|.+.-|+ .||.+.|-...|.++-|+-||.+-|+|+||- .|--+-||.|++.
T Consensus 6 qFF~~AGIPs~~A~~YA~~Fv~NRIqk~MLldLnKe~l~ElGvT~iGDiiaILrh~K~ 63 (389)
T KOG3930|consen 6 QFFVRAGIPSEIAKKYAKSFVTNRIQKEMLLDLNKETLSELGVTAIGDIIAILRHIKA 63 (389)
T ss_pred HHHHHcCCCchHHhhHHHHHHhhhhhHHHHhhhhHHHHHHhchhhhhhHHHHHHHHHH
Confidence 44445554 4899999999999999999999999999996 6999999999975
No 37
>KOG3791 consensus Predicted RNA-binding protein involved in translational regulation [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=46.84 E-value=7.5 Score=40.09 Aligned_cols=39 Identities=31% Similarity=0.331 Sum_probs=35.1
Q ss_pred HHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCC
Q 025019 200 GMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPG 240 (259)
Q Consensus 200 ~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~g 240 (259)
.||+.|+|.||..+|+. -+-+++=+|+|..|+.|||=-|
T Consensus 480 ~WLkslrlhKyt~~~~~--t~~~e~l~ls~~~l~~~Gv~a~ 518 (569)
T KOG3791|consen 480 EWLKSLRLHKYTNALKS--TTWFELLILSDMKLQHVGVLAL 518 (569)
T ss_pred HHHHhccchhhhccccC--ccHHHhhccchhhcccchhhhh
Confidence 69999999999999998 7888999999999999998544
No 38
>PLN02975 complex I subunit
Probab=45.06 E-value=47 Score=26.90 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHh---hhhhhccCCCCchhHHH
Q 025019 161 AFTSGLLFAIFQGCSFKI---GEMWQSTQRPTADDVYY 195 (259)
Q Consensus 161 ai~gga~fAafsgai~~~---g~~f~~~~~~~~~d~~y 195 (259)
++..+.+.+++.|.+... ..+|.+++.++-|...|
T Consensus 58 ~mr~ag~iG~~gGf~~aYq~S~~Rf~G~~EN~rEV~~~ 95 (97)
T PLN02975 58 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARY 95 (97)
T ss_pred HHHHHHHHHHhhhHHhhhcccchhhcCCCCCHHHHHhc
Confidence 334444445555554443 56777777554444444
No 39
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=43.96 E-value=58 Score=23.85 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=17.9
Q ss_pred cchhHHHHHHHHHHHHhhhccCC
Q 025019 130 EDLQSSVVAAFGSGAAFSLVSGM 152 (259)
Q Consensus 130 ~D~~NsiiAG~~TGa~l~~~sG~ 152 (259)
.+.+..+++++++|++.+...|+
T Consensus 23 ~~~~~~~~~~~~~G~~~G~~~g~ 45 (65)
T PF10439_consen 23 GNCVGGVGGGAAGGAAAGAAGGP 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhccc
Confidence 34566678888889888888886
No 40
>PRK10132 hypothetical protein; Provisional
Probab=43.42 E-value=50 Score=26.94 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhh
Q 025019 53 TAINGAAIGAFLGVM 67 (259)
Q Consensus 53 g~v~Gg~lG~~~G~~ 67 (259)
+...+.++|+++|++
T Consensus 89 svgiaagvG~llG~L 103 (108)
T PRK10132 89 SVGTAAAVGIFIGAL 103 (108)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444555665555
No 41
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=43.12 E-value=84 Score=24.09 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=30.6
Q ss_pred CchhhHHHHHHHHHHhHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 025019 14 LPQKAIKDVQFKLKELENGYKSWLAK-QPLPVEAAIVTATTAINGAAIGAFLGVM 67 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~-q~~~~E~cvkt~~g~v~Gg~lG~~~G~~ 67 (259)
.+++.++++++|+.++|+..+---.. +++.-+. +.--+|.+-|.++|.++=.+
T Consensus 9 v~~~d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk-~GRDiGIlYG~viGlli~~~ 62 (70)
T TIGR01149 9 VEPDEFNEVMKRLDEIEEKVEFVNGEVAQRIGKK-VGRDIGILYGLVIGLILFLI 62 (70)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHHHHH
Confidence 45688999999999998887642211 1111110 12335666677777665433
No 42
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.90 E-value=57 Score=28.81 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=25.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025019 41 PLPVEAAIVTATTAINGAAIGAFLGVMT 68 (259)
Q Consensus 41 ~~~~E~cvkt~~g~v~Gg~lG~~~G~~~ 68 (259)
+-.+.+...+++|++.|+++|+|++++.
T Consensus 41 ~c~~Ka~~sgV~GfglG~~~GlFlas~d 68 (168)
T KOG3225|consen 41 SCAVKAVKSGVTGFGLGGAFGLFLASLD 68 (168)
T ss_pred chhHHHHHhhccccchhhhHHhhhhhcc
Confidence 6677777799999999999999999998
No 43
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=40.24 E-value=1.3e+02 Score=24.82 Aligned_cols=56 Identities=13% Similarity=-0.013 Sum_probs=31.3
Q ss_pred HhhcccchhHHHHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 025019 125 RLRGKEDLQSSVVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGE 180 (259)
Q Consensus 125 ~~RgK~D~~NsiiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~ 180 (259)
++..-=-.-||++-|+.+|+++|.-.-..+.++.+++=.+-..|.+.+.+....-+
T Consensus 33 ~~~~iPCfR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr 88 (118)
T PF12597_consen 33 NVHKIPCFRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCR 88 (118)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 34444455677777777777777554443334455555555556655555444433
No 44
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=40.06 E-value=94 Score=24.24 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=30.8
Q ss_pred CchhhHHHHHHHHHHhHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025019 14 LPQKAIKDVQFKLKELENGYKSWLAK-QPLPVEAAIVTATTAINGAAIGAFLGVMT 68 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~~~-q~~~~E~cvkt~~g~v~Gg~lG~~~G~~~ 68 (259)
.+++.+++++.|+.++|+..+---.. +++.-+. +.--.|.+-|.++|.++=++-
T Consensus 12 v~~~d~~~i~~rLD~iEeKVEftn~Ei~Qr~Gkk-vGRDiGIlYG~viGlli~~i~ 66 (77)
T PRK01026 12 VDPKDFKEIQKRLDEIEEKVEFTNAEIFQRIGKK-VGRDIGILYGLVIGLLIVLVY 66 (77)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHHHHHH
Confidence 56688999999999998887642211 0101000 122346666666666654443
No 45
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=39.65 E-value=15 Score=25.59 Aligned_cols=12 Identities=42% Similarity=1.077 Sum_probs=9.9
Q ss_pred hhhhcCCCCCCc
Q 025019 230 SALRDVRIPPGP 241 (259)
Q Consensus 230 ~~l~~~~ip~gp 241 (259)
..|++.|+||||
T Consensus 13 ~~L~~~G~~~gP 24 (44)
T smart00540 13 AELKQYGLPPGP 24 (44)
T ss_pred HHHHHcCCCCCC
Confidence 346789999999
No 46
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=39.54 E-value=41 Score=30.74 Aligned_cols=12 Identities=25% Similarity=0.041 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 025019 165 GLLFAIFQGCSF 176 (259)
Q Consensus 165 ga~fAafsgai~ 176 (259)
|++.|++..+.+
T Consensus 115 GlaGalig~~ad 126 (215)
T PF05818_consen 115 GLAGALIGMIAD 126 (215)
T ss_pred hHHHhHHHHHHh
Confidence 555555554443
No 47
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=37.86 E-value=1.2e+02 Score=26.85 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=17.6
Q ss_pred hhhhcCCCCCCchHHHHHhhhhCccc
Q 025019 230 SALRDVRIPPGPRLLILDHIQRDPEL 255 (259)
Q Consensus 230 ~~l~~~~ip~gpr~~il~~~~~~~~~ 255 (259)
.-+++-++|+----+|.+++.+||+.
T Consensus 87 ~iy~~~Gl~~~~a~~i~~~l~~~~~~ 112 (213)
T PF01988_consen 87 EIYRAKGLSEEDAEEIAEELSKDKDA 112 (213)
T ss_pred HHHHHCCCCHHHHHHHHHHHHhCchH
Confidence 34556677777777777777777664
No 48
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=37.13 E-value=21 Score=33.28 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=10.1
Q ss_pred cchhHHHHHHHHHHHHhhh
Q 025019 130 EDLQSSVVAAFGSGAAFSL 148 (259)
Q Consensus 130 ~D~~NsiiAG~~TGa~l~~ 148 (259)
+-+.+..+.|+++||+++.
T Consensus 110 ~~~L~~Gy~ga~~Gaa~G~ 128 (243)
T PRK13731 110 QGWLNRGYEGAAVGAALGA 128 (243)
T ss_pred HHHHhhchhhHHHHHHhhh
Confidence 3344444556666665554
No 49
>PF06568 DUF1127: Domain of unknown function (DUF1127); InterPro: IPR009506 This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.
Probab=36.46 E-value=15 Score=24.54 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.6
Q ss_pred CcccCCChhhhhcCCCCC
Q 025019 222 STLPLLTDSALRDVRIPP 239 (259)
Q Consensus 222 ~~l~~~~~~~l~~~~ip~ 239 (259)
.+|.-|+|..|+|+||-.
T Consensus 18 ~~L~~Lsd~~L~DIGl~R 35 (40)
T PF06568_consen 18 RELAELSDRQLADIGLTR 35 (40)
T ss_pred HHHccCCHHHHHHcCCCH
Confidence 456678999999999964
No 50
>PRK10132 hypothetical protein; Provisional
Probab=35.83 E-value=1.4e+02 Score=24.32 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025019 49 VTATTAINGAAIGAFLG 65 (259)
Q Consensus 49 kt~~g~v~Gg~lG~~~G 65 (259)
.-+++++.|+++|++++
T Consensus 89 svgiaagvG~llG~Ll~ 105 (108)
T PRK10132 89 SVGTAAAVGIFIGALLS 105 (108)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56778888888888875
No 51
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=35.72 E-value=7.4 Score=41.40 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=34.7
Q ss_pred HHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhc
Q 025019 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRD 234 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~ 234 (259)
++.||.+|||.+|...|-.-+++---|-+||-.+||-
T Consensus 678 gneWLPslGLpQYrsyFme~LvDARMLdhLsKkdLr~ 714 (916)
T KOG0249|consen 678 GNEWLPSLGLPQYRSYFMECLVDARMLDHLSKKDLRG 714 (916)
T ss_pred ccccccccCchHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5789999999999999999999999999999999984
No 52
>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]
Probab=34.02 E-value=12 Score=34.31 Aligned_cols=51 Identities=27% Similarity=0.442 Sum_probs=38.8
Q ss_pred HHHhh-hCchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhh
Q 025019 200 GMLDK-LGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQ 250 (259)
Q Consensus 200 ~~l~~-lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~ 250 (259)
..|++ +||++|.+.|....+.-.++--++++.|.+++|= -|-|...|..++
T Consensus 122 ~~~~~~~~l~s~~~~~~~~~~~l~~~~t~~~~vl~~L~~lglg~y~~~f~~~e 174 (216)
T KOG4374|consen 122 SLLTSRLGLESYIKEFNLQEIDLQTFGTLTEGVLMELGILGLGAYWKMFEAIE 174 (216)
T ss_pred hHHHHhhcccccchhhhcchHhhhhcccccchHHHHHHHHhHHHHHHHHHHHH
Confidence 45555 9999999999999999888888899988888763 355555444443
No 53
>PRK10404 hypothetical protein; Provisional
Probab=33.74 E-value=1.6e+02 Score=23.71 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025019 49 VTATTAINGAAIGAFLG 65 (259)
Q Consensus 49 kt~~g~v~Gg~lG~~~G 65 (259)
.-+++++.|+++|++++
T Consensus 83 avGiaagvGlllG~Ll~ 99 (101)
T PRK10404 83 GIGVGAAVGLVLGLLLA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45678888999998875
No 54
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=29.40 E-value=57 Score=24.11 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 025019 51 ATTAINGAAIGAFLGVMTQDL 71 (259)
Q Consensus 51 ~~g~v~Gg~lG~~~G~~~~s~ 71 (259)
..|.+.|+++|+..|++.+.-
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP~ 22 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAPK 22 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 357778888888888887543
No 55
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=28.57 E-value=48 Score=24.91 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 025019 51 ATTAINGAAIGAFLGVM 67 (259)
Q Consensus 51 ~~g~v~Gg~lG~~~G~~ 67 (259)
+++.+.|+++|+|++-.
T Consensus 4 ilali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARK 20 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 56
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=28.33 E-value=48 Score=35.16 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCC
Q 025019 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI 237 (259)
Q Consensus 194 ~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~i 237 (259)
++--+--||.-.||++|.+.|..+.++---|.+||-.+|-++++
T Consensus 624 Dv~wvlRWLDDIGLPQYKdqF~E~rVDgrmL~ylTvnDll~lkV 667 (861)
T KOG1899|consen 624 DVHWVLRWLDDIGLPQYKDQFAENRVDGRMLHYLTVNDLLELKV 667 (861)
T ss_pred hHHHHHHHHHhcCChhhHHHHhhhccchhhHhhhhHhhhhHHHH
Confidence 45566779999999999999999999999999999999988765
No 57
>TIGR01992 PTS-IIBC-Tre PTS system, trehalose-specific IIBC component. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.
Probab=27.95 E-value=1.7e+02 Score=29.18 Aligned_cols=65 Identities=18% Similarity=0.119 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHH-------HHhhhccCCCCCChhHHHHHHHHHHHHHHHHH
Q 025019 104 VQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSG-------AAFSLVSGMGGANPAVNAFTSGLLFAIFQGCS 175 (259)
Q Consensus 104 ~~a~nFAvvGgvysg~ec~ie~~RgK~D~~NsiiAG~~TG-------a~l~~~sG~~~~~~~~aai~gga~fAafsgai 175 (259)
....|||..|+.++..= +-|. ++..+...+++++| ++++..-.. ..|+-+++.+|+..+++.+.+
T Consensus 345 ~~~~~~aq~ga~lav~l----k~k~-~~~k~~a~sa~is~~~GITEPaiyGv~l~~--kkp~i~~~ig~~igG~~~g~~ 416 (462)
T TIGR01992 345 IALSNIAQGSAALGIIF----MSRN-EKEKGLSLTSAISAYLGVTEPAMFGVNLKY--KFPFIAAMIGSGLAGLLSGLN 416 (462)
T ss_pred HHHHHHHHHHHHHHHHH----HHCC-HHHHHHHHHHHHHHHhccchHhHHHhccch--hhHHHHHHHHHHHHHHHHHHh
Confidence 45668888888887642 2222 24444444444443 344443332 234566666666666666555
No 58
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=27.32 E-value=49 Score=24.60 Aligned_cols=39 Identities=33% Similarity=0.412 Sum_probs=31.2
Q ss_pred CCchhHHHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCCchHHHHH
Q 025019 188 PTADDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILD 247 (259)
Q Consensus 188 ~~~~d~~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~ 247 (259)
+-..++...|....|+++|++ .+|++.||-+|=..+|-+
T Consensus 26 ~~~~~e~~~~f~~~L~~~Gv~---------------------~~L~~~G~~~GD~V~Ig~ 64 (69)
T TIGR03595 26 PFNNDENLRRFARKLKKLGVE---------------------DALRKAGAKDGDTVRIGD 64 (69)
T ss_pred CCCCHHHHHHHHHHHHHCCHH---------------------HHHHHcCCCCCCEEEEcc
Confidence 434556688999999999998 899999999997666654
No 59
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=27.06 E-value=64 Score=23.92 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCCchHHHHH
Q 025019 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILD 247 (259)
Q Consensus 191 ~d~~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~ 247 (259)
.++-..|....|+++|++ .+|++.||.+|=..+|-+
T Consensus 29 ~~e~~~rf~~~L~~~Gv~---------------------~~L~~~G~~~GD~V~Ig~ 64 (69)
T PF09269_consen 29 DEESLRRFQRKLKKMGVE---------------------KALRKAGAKEGDTVRIGD 64 (69)
T ss_dssp TGGGHHHHHHHHHHTTHH---------------------HHHHTTT--TT-EEEETT
T ss_pred CHHHHHHHHHHHHHCCHH---------------------HHHHHcCCCCCCEEEEcC
Confidence 344578889999999998 899999999997666543
No 60
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=25.59 E-value=2.1e+02 Score=23.52 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=13.9
Q ss_pred cccCCchhhHHHHHHHHHHhHHHHH
Q 025019 10 SLVQLPQKAIKDVQFKLKELENGYK 34 (259)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (259)
++..++....++++.+.+.+-.+.+
T Consensus 30 ssg~~a~~e~~~lR~r~~~~Lk~~r 54 (104)
T COG4575 30 SSGSLAGDEAEELRSKAESALKEAR 54 (104)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHH
Confidence 4455666666666666554433333
No 61
>PRK00523 hypothetical protein; Provisional
Probab=24.73 E-value=79 Score=24.33 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=8.2
Q ss_pred chhhh-hhhhhhhhhcCCc
Q 025019 85 NPDAV-APFQQVQAVAGGP 102 (259)
Q Consensus 85 ~~q~~-~~~k~~~~~~~~~ 102 (259)
++++. ..+.+ ||..|
T Consensus 41 ne~mir~M~~Q---MGqKP 56 (72)
T PRK00523 41 TENMIRAMYMQ---MGRKP 56 (72)
T ss_pred CHHHHHHHHHH---hCCCc
Confidence 55444 44443 77765
No 62
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=24.56 E-value=2.3e+02 Score=21.70 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=17.4
Q ss_pred CchhhHHHHHHHHHHhHHHHHH
Q 025019 14 LPQKAIKDVQFKLKELENGYKS 35 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (259)
.+++..+++++|+.++|+..+-
T Consensus 9 v~~~~~~~i~~rLd~iEeKvEf 30 (70)
T PF04210_consen 9 VDPDDFNEIMKRLDEIEEKVEF 30 (70)
T ss_pred eCHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999998887653
No 63
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=24.43 E-value=1.7e+02 Score=30.81 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=45.3
Q ss_pred chhHH-HHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhhhhhccC--CCCchhHHHHHHHHHHhhhCc
Q 025019 131 DLQSS-VVAAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQGCSFKIGEMWQSTQ--RPTADDVYYARTRGMLDKLGL 207 (259)
Q Consensus 131 D~~Ns-iiAG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafsgai~~~g~~f~~~~--~~~~~d~~y~r~~~~l~~lg~ 207 (259)
|..|+ +++|.+-|+++-.--+. ....+++=|+.. ..+.+.+.||-.- -+-.+..+|.|....++
T Consensus 517 dl~np~VvaGl~~G~~lpylFs~--------~tmtAVgrAA~~-vV~EVRRQfRE~PGimegk~kPdY~R~Vdi~T---- 583 (703)
T COG3808 517 DLSNPYVVAGLLLGGLLPYLFSG--------ITMTAVGRAAME-VVEEVRRQFREIPGIMEGKAKPDYGRCVDILT---- 583 (703)
T ss_pred ecCChHHHHHHHHhhHHHHHhcc--------hHHHHHHHHHHH-HHHHHHHHHhhCCccccCCcCCchhHHHHHHH----
Confidence 45554 56898888887654331 123334434433 4456677775431 12235668999988765
Q ss_pred hhhHHhhhhccCCCCcccCCChhhhhcCCCC
Q 025019 208 QNYTKNFKRGLLTDSTLPLLTDSALRDVRIP 238 (259)
Q Consensus 208 ~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip 238 (259)
+++|||+-||
T Consensus 584 ---------------------~aAl~eMi~P 593 (703)
T COG3808 584 ---------------------KAALKEMIIP 593 (703)
T ss_pred ---------------------HHHHHHhcch
Confidence 4799999887
No 64
>COG4803 Predicted membrane protein [Function unknown]
Probab=24.13 E-value=69 Score=28.23 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=36.7
Q ss_pred CchhhHHHHHHHHHHhHHHHHHHH---------HhCCchhhHHH-HHHHHHHHHHHHHHHHHhhh
Q 025019 14 LPQKAIKDVQFKLKELENGYKSWL---------AKQPLPVEAAI-VTATTAINGAAIGAFLGVMT 68 (259)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~w~---------~~q~~~~E~cv-kt~~g~v~Gg~lG~~~G~~~ 68 (259)
|...--||+..++.+|+.+.--=+ ..--.+..-.+ .|+.|++.|+.-|.++|+++
T Consensus 12 ~~e~~Aeev~~~l~~LqkE~LI~L~DAvvvvk~~~gkvklkQ~~Nlt~aGa~sGafWG~LiGllF 76 (170)
T COG4803 12 DDEDKAEEVRERLNELQKEYLITLEDAVVVVKDEDGKVKLKQLMNLTGAGAVSGAFWGMLIGLLF 76 (170)
T ss_pred CCcchHHHHHHHHHHhhHHHheeccceEEEEeCCCCCeeHHHHhhhhhhccccccHHHHHHHHHH
Confidence 344556788888888877653211 11123344455 78889999988888888887
No 65
>COG2944 Predicted transcriptional regulator [Transcription]
Probab=22.84 E-value=52 Score=26.91 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.3
Q ss_pred CCCCCCchHHHHHhhhhCcccc
Q 025019 235 VRIPPGPRLLILDHIQRDPELK 256 (259)
Q Consensus 235 ~~ip~gpr~~il~~~~~~~~~~ 256 (259)
.+-|.||-|++|+-|+.+|...
T Consensus 81 r~kPsg~AlkLL~ivq~~p~~~ 102 (104)
T COG2944 81 RKKPSGAALKLLRIVQNHPLEV 102 (104)
T ss_pred CcCCCCHHHHHHHHHHhcchhh
Confidence 4679999999999999999754
No 66
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=22.07 E-value=2.2e+02 Score=28.78 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHhhcccchhHHHHHHHHHHHHhhhcc----CC--CCCChhHHHHHHHHHHHHHHHHH
Q 025019 103 LVQARNFAVITGVNAGISCVMKRLRGKEDLQSSVVAAFGSGAAFSLVS----GM--GGANPAVNAFTSGLLFAIFQGCS 175 (259)
Q Consensus 103 ~~~a~nFAvvGgvysg~ec~ie~~RgK~D~~NsiiAG~~TGa~l~~~s----G~--~~~~~~~aai~gga~fAafsgai 175 (259)
...+.|+|..|+.++..= +-|. .+..+...+.++++-+.+.+- |- .-..|+-+++.+|+..+++.+.+
T Consensus 333 ~~~~a~~aq~ga~lav~l----k~Kn-~~~k~~a~sa~isa~~~GITEPaiYGv~L~~kkpfi~~~igg~vGG~~~g~~ 406 (472)
T PRK09796 333 SEIGANLSLGGSSLAVAW----KTKN-PELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIASLISGFICGAVAGMA 406 (472)
T ss_pred HHHHHHHHHHHHHHHHHH----HHcC-HHHHHHHHHHHHHHHHcCCCchhheeeecchhhHHHHHHHHHHHHHHHHHHH
Confidence 346678888888877642 2222 235555555555553334321 10 11235666777777667766655
No 67
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=21.92 E-value=3.5e+02 Score=23.17 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=25.3
Q ss_pred HHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 025019 34 KSWLAKQPLPVEAAIVTATTAINGAAIGAFLGVMTQD 70 (259)
Q Consensus 34 ~~w~~~q~~~~E~cvkt~~g~v~Gg~lG~~~G~~~~s 70 (259)
+.|.... ....+...++|.+.|++.|++.|+....
T Consensus 28 R~~~e~~--~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~ 62 (149)
T TIGR00983 28 RGWFEDL--CFGTGTCYLTGLAIGALNGLRLGLKETQ 62 (149)
T ss_pred CChhhhh--hhhHhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4555432 2445568889999999999999999743
No 68
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=21.27 E-value=5.9e+02 Score=22.69 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHh--h-cccchhHHHH--HHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHH
Q 025019 103 LVQARNFAVITGVNAGISCVMKRL--R-GKEDLQSSVV--AAFGSGAAFSLVSGMGGANPAVNAFTSGLLFAIFQ 172 (259)
Q Consensus 103 ~~~a~nFAvvGgvysg~ec~ie~~--R-gK~D~~Nsii--AG~~TGa~l~~~sG~~~~~~~~aai~gga~fAafs 172 (259)
...|..-.++|.+|=.+|...+.- | ..+.-||+++ -+++.|-.+++++=+ +.+.+...+.+|+.+
T Consensus 48 ~~~G~agv~~G~l~P~lD~~~~~~~~~~~~~~~w~~v~R~i~~FvGi~~airkl~-----w~s~~Q~s~~lalln 117 (193)
T PF07281_consen 48 PLWGLAGVLLGLLLPWLDSFLGESKPRSSRKPDWSSVLRSIGAFVGISFAIRKLP-----WSSSLQASITLALLN 117 (193)
T ss_pred HHHHHHHHHHHhhHHHHHHhcccccccCCccccHHHHHHHHHHHHHHHHHHhhCC-----CCcHHHHHHHHHHHH
Confidence 345555556677777777776665 2 2344566776 566678888888654 344444444444444
No 69
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=21.23 E-value=36 Score=27.69 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=35.8
Q ss_pred HHHHHHhHHHHHHHHHhC----CchhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 025019 23 QFKLKELENGYKSWLAKQ----PLPVEAAIVTATTAINGAAIGAFLGVMTQD 70 (259)
Q Consensus 23 ~~~~~~~~~~~~~w~~~q----~~~~E~cvkt~~g~v~Gg~lG~~~G~~~~s 70 (259)
.+-.+++...++-|.... +--+||.+-+.-+++..+++|+++|...+-
T Consensus 41 ~~~I~ei~p~Y~PWf~PlwEPPsGEiESLLFaLQAAiGAgiIgY~lG~~~gr 92 (100)
T PRK02898 41 EEAITEIAPDYEPWFEPLWEPPSGEIESLLFALQAALGAGIIGYILGYYKGR 92 (100)
T ss_pred HHHHHHhCCCCcccccccccCCcchHHHHHHHHHHHHhhhhhheeeeehhhh
Confidence 334455666788898754 345778888888999999999999988754
No 70
>PRK02126 ribonuclease Z; Provisional
Probab=21.05 E-value=67 Score=30.60 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=19.9
Q ss_pred cCCChhhhhcCCCCCCchHHHHHh
Q 025019 225 PLLTDSALRDVRIPPGPRLLILDH 248 (259)
Q Consensus 225 ~~~~~~~l~~~~ip~gpr~~il~~ 248 (259)
+-++-+.|++.+|||||-+.-|++
T Consensus 177 ~~~~~ek~~~~gi~~g~~~~~Lk~ 200 (334)
T PRK02126 177 INIDKNRLAELGLPPGPWLRELKH 200 (334)
T ss_pred cCcCHHHHHHcCCCCChHHHHHHh
Confidence 457778999999999998776665
No 71
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=20.97 E-value=1.4e+02 Score=26.76 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHh
Q 025019 103 LVQARNFAVITGVNAGISCVMKRL 126 (259)
Q Consensus 103 ~~~a~nFAvvGgvysg~ec~ie~~ 126 (259)
--+++||+.++=.|..++.++..+
T Consensus 89 ~~~A~nl~k~sK~fg~~~~~i~~~ 112 (187)
T PF01024_consen 89 KDMAKNLAKFSKAFGITGKAIDAY 112 (187)
T ss_dssp HHHHHHHHHHHGGGTSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHhhHH
Confidence 347899999999888888877554
No 72
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=20.25 E-value=1.6e+02 Score=27.75 Aligned_cols=49 Identities=27% Similarity=0.397 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCCch
Q 025019 191 DDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPR 242 (259)
Q Consensus 191 ~d~~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr 242 (259)
.++-+++-+.++++||++. +++.=-++.+.|+-+-+.++++..+..-||
T Consensus 311 a~~~~~~l~~l~~~lglp~---~l~~~gi~~~~l~~ia~~a~~~~~~~~~P~ 359 (366)
T PF00465_consen 311 ADDAIDELRALLRSLGLPT---RLSDLGIDEEDLDEIAEAALADQRMKNNPR 359 (366)
T ss_dssp HHHHHHHHHHHHHHTT--S---SGGGGT-TGGGHHHHHHHHTCTGGGGGSSS
T ss_pred HHHHHHHHHHHHHHhCCCC---CHHHcCCCHHHHHHHHHHHHhCccccCCCC
Confidence 3456889999999999886 333334555666666666666655544444
No 73
>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function.
Probab=20.09 E-value=4.8e+02 Score=22.49 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhccCCC-CCChhH----HHHHHHHHHHHHHHHHHHhhhhhhccCCCCchhHHHHHHHHHHhhhC
Q 025019 135 SVVAAFGSGAAFSLVSGMG-GANPAV----NAFTSGLLFAIFQGCSFKIGEMWQSTQRPTADDVYYARTRGMLDKLG 206 (259)
Q Consensus 135 siiAG~~TGa~l~~~sG~~-~~~~~~----aai~gga~fAafsgai~~~g~~f~~~~~~~~~d~~y~r~~~~l~~lg 206 (259)
+++++++++.++.+-..+. .+..+. .....|++.+++-++++..+..- ..+-.|++-|.|....+.+-|
T Consensus 39 s~lGsl~~~Pi~~~~~~~~~~~~~~~~~~~~~~~~G~l~G~~~gp~m~~~rmr---~~~~~~~e~~DR~yRLr~Nk~ 112 (155)
T PF08560_consen 39 SFLGSLIVGPIYRLLKQPRLNPKELTNRFVKGGRNGALAGAVLGPVMTYARMR---GSSLEEIELQDRCYRLRFNKG 112 (155)
T ss_pred HHHHHHHhHHHHHHHhCccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---ccccchHHHHHHHHHHHhCcc
No 74
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=20.08 E-value=92 Score=31.75 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=29.5
Q ss_pred HHHHHHHH-hhhCchhhHHhhhhccCCCCcccCCC
Q 025019 195 YARTRGML-DKLGLQNYTKNFKRGLLTDSTLPLLT 228 (259)
Q Consensus 195 y~r~~~~l-~~lg~~~y~~~~~~~~~~~~~l~~~~ 228 (259)
.+++..|| +...|++|+++||+-.++-.+||-+-
T Consensus 137 ~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlA 171 (575)
T KOG4403|consen 137 NERTVQWLINDVELPQYVEAFKAKKVDGKALPRLA 171 (575)
T ss_pred HHHHHHHHHHhcccHHHHHHHHhccCCcccccccc
Confidence 56888887 56789999999999999999999763
No 75
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=20.05 E-value=4e+02 Score=20.21 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhhc----cCCCCC---ChhHHHHHHHHHHHHHHHHHHHhhhhh
Q 025019 135 SVVAAFGSGAAFSLV----SGMGGA---NPAVNAFTSGLLFAIFQGCSFKIGEMW 182 (259)
Q Consensus 135 siiAG~~TGa~l~~~----sG~~~~---~~~~aai~gga~fAafsgai~~~g~~f 182 (259)
++.+|+++|-++... .|.-.| ......+.-.++||++|+++..+-+..
T Consensus 9 ~~~ag~~a~k~~~~~W~~~tg~~~P~~~~d~~~~~~e~l~~Aaisgav~avv~~~ 63 (78)
T PF14019_consen 9 GLAAGFLAGKVFEQVWKKVTGREPPKDPDDPDRSLREALAFAAISGAVFAVVRAA 63 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777766522 232122 123445556666777777776665544
Done!