Query 025019
Match_columns 259
No_of_seqs 174 out of 595
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 18:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k1r_B Usher syndrome type-1G 99.4 6.4E-14 2.2E-18 104.8 2.3 54 198-251 5-58 (74)
2 2f3n_A SH3 and multiple ankyri 99.0 1.5E-10 5E-15 86.2 4.1 55 197-251 9-64 (76)
3 1kw4_A Polyhomeotic; SAM domai 99.0 2E-10 6.7E-15 88.6 2.3 57 195-251 19-77 (89)
4 2gle_A Neurabin-1; SAM domain, 98.9 1.7E-10 5.9E-15 84.8 1.6 55 197-251 11-66 (74)
5 3bq7_A Diacylglycerol kinase d 98.9 4.3E-10 1.5E-14 84.6 2.9 56 196-251 13-69 (81)
6 2e8n_A Ephrin type-A receptor 98.9 2.4E-10 8.3E-15 87.4 1.5 57 195-251 12-70 (88)
7 2qkq_A Ephrin type-B receptor 98.9 3.6E-10 1.2E-14 85.4 1.8 57 195-251 15-73 (83)
8 3hil_A Ephrin type-A receptor 98.9 1.3E-09 4.3E-14 83.0 4.5 57 195-251 23-81 (82)
9 2kso_A Ephrin type-A receptor 98.9 4E-10 1.4E-14 85.5 1.4 58 194-251 15-74 (82)
10 1b4f_A EPHB2; SAM domain, EPH 98.9 7.7E-10 2.6E-14 83.3 2.8 56 196-251 12-69 (82)
11 2eam_A Putative 47 kDa protein 98.8 1.8E-09 6.2E-14 81.0 4.1 55 197-251 14-72 (80)
12 1ucv_A Ephrin type-A receptor 98.8 9.3E-10 3.2E-14 82.9 2.2 55 197-251 9-65 (81)
13 1b0x_A Protein (EPHA4 receptor 98.8 1.9E-09 6.4E-14 83.5 2.4 57 195-251 26-84 (94)
14 3h8m_A Ephrin type-A receptor 98.8 2.3E-09 7.7E-14 83.0 2.7 58 194-251 24-83 (90)
15 2kg5_A ARF-GAP, RHO-GAP domain 98.8 1.6E-09 5.3E-14 85.4 1.8 55 197-251 28-84 (100)
16 3kka_C Ephrin type-A receptor 98.8 2E-09 6.7E-14 82.7 2.1 59 193-251 19-79 (86)
17 2eao_A Ephrin type-B receptor 98.7 1.4E-09 4.6E-14 85.0 0.8 57 195-251 22-80 (99)
18 1x40_A ARAP2; ASAP-related pro 98.7 4.6E-09 1.6E-13 81.0 2.8 54 198-251 18-73 (91)
19 2k4p_A Phosphatidylinositol-3, 98.7 6.3E-09 2.2E-13 79.9 3.0 53 199-251 30-84 (86)
20 2lmr_A ODIN, ankyrin repeat an 98.7 1.1E-08 3.8E-13 80.7 4.1 56 197-252 31-90 (101)
21 3bs5_B Connector enhancer of k 98.7 5.6E-09 1.9E-13 77.7 2.1 55 197-251 11-68 (80)
22 2e8o_A SAM domain and HD domai 98.6 1.8E-08 6.2E-13 79.0 4.2 58 194-251 31-91 (103)
23 2ean_A Connector enhancer of k 98.6 7.2E-09 2.5E-13 77.9 1.3 55 197-251 15-72 (83)
24 2ke7_A Ankyrin repeat and ster 98.5 2.1E-08 7.2E-13 78.8 1.7 54 198-251 25-82 (103)
25 2d3d_A VTS1 protein; RNA bindi 98.5 2.9E-08 9.9E-13 77.0 2.2 55 195-251 18-73 (88)
26 3sei_A Caskin-1; SAM domain, p 98.5 4.4E-08 1.5E-12 81.7 3.3 62 190-251 5-67 (149)
27 1v38_A SAM-domain protein sams 98.5 4.5E-08 1.5E-12 73.4 1.8 54 198-251 15-70 (78)
28 3bs7_A Protein aveugle; sterIl 98.5 5.3E-08 1.8E-12 72.1 2.2 55 197-251 10-67 (78)
29 2dl0_A SAM and SH3 domain-cont 98.4 1.5E-07 5.1E-12 73.6 3.2 58 194-251 22-81 (97)
30 1pk1_B Sex COMB on midleg CG94 98.3 1.6E-07 5.3E-12 72.5 2.4 57 195-251 19-78 (89)
31 2es6_A VTS1P; SAM domain, prot 98.3 1.1E-07 3.8E-12 75.4 1.6 55 195-251 31-86 (101)
32 1ow5_A Serine/threonine-protei 98.3 9.8E-08 3.4E-12 73.5 0.9 55 197-251 17-73 (85)
33 3sei_A Caskin-1; SAM domain, p 98.3 1.6E-07 5.3E-12 78.3 1.9 59 197-255 81-141 (149)
34 2b6g_A VTS1P; alpha-helix, pen 98.3 1.8E-07 6.1E-12 76.2 1.9 56 194-251 48-104 (119)
35 2kiv_A Ankyrin repeat and ster 98.3 3.7E-07 1.3E-11 75.6 3.7 55 198-252 17-75 (148)
36 3bs5_A Protein aveugle; sterIl 98.2 4E-07 1.4E-11 72.0 2.2 57 195-251 28-87 (106)
37 2kiv_A Ankyrin repeat and ster 98.1 9.8E-07 3.4E-11 73.0 2.7 57 195-251 88-147 (148)
38 1v85_A Similar to ring finger 98.1 9.2E-07 3.1E-11 67.8 2.0 57 195-251 22-83 (91)
39 2d8c_A Phosphatidylcholine:cer 98.0 1.9E-06 6.5E-11 67.4 1.6 54 196-251 23-79 (97)
40 1oxj_A RNA-binding protein sma 97.9 2.7E-06 9.3E-11 73.1 1.7 53 197-251 9-61 (173)
41 2y9t_A Tumor protein 63; apopt 97.7 1.9E-05 6.6E-10 60.2 3.7 54 198-251 9-63 (82)
42 2y9u_A Tumor protein 63; apopt 97.7 1.1E-05 3.8E-10 59.6 2.1 54 198-251 7-61 (69)
43 1wwv_A Connector enhancer of k 97.3 4.2E-05 1.4E-09 59.0 0.4 53 197-251 18-73 (91)
44 3tad_C Liprin-beta-1; protein 97.3 9.3E-05 3.2E-09 67.3 2.2 55 197-251 94-149 (265)
45 3idw_A Actin cytoskeleton-regu 97.1 0.00023 7.9E-09 53.2 2.4 44 208-251 20-63 (72)
46 3tad_C Liprin-beta-1; protein 95.9 0.0028 9.5E-08 57.6 2.1 57 195-251 20-78 (265)
47 2l5y_A Stromal interaction mol 92.9 0.067 2.3E-06 44.9 3.4 51 196-246 84-140 (150)
48 3tac_B Liprin-alpha-2; transfe 92.3 0.058 2E-06 50.5 2.4 53 198-250 166-220 (334)
49 2k60_A Protein (stromal intera 89.6 0.076 2.6E-06 44.5 0.5 49 197-245 85-139 (150)
50 3tac_B Liprin-alpha-2; transfe 86.7 0.26 8.9E-06 46.1 2.1 56 196-251 42-101 (334)
51 1dxs_A P53-like transcription 86.5 0.4 1.4E-05 36.3 2.6 52 198-249 9-61 (80)
52 2dkz_A Hypothetical protein LO 76.8 0.74 2.5E-05 35.2 1.0 56 195-250 20-77 (84)
53 2eap_A Lymphocyte cytosolic pr 73.5 1.4 4.9E-05 34.0 1.8 52 197-251 26-77 (90)
54 1uqv_A STE50 protein; SAM, ste 58.4 2.3 7.9E-05 32.5 0.3 62 197-258 16-84 (85)
55 3h38_A TRNA nucleotidyl transf 32.7 22 0.00075 33.9 2.6 28 224-251 374-403 (441)
56 3twe_A Alpha4H; unknown functi 29.5 50 0.0017 19.6 2.8 18 17-34 8-25 (27)
57 2h80_A STAR-related lipid tran 25.5 50 0.0017 24.8 2.9 52 192-247 18-75 (81)
58 1miw_A TRNA CCA-adding enzyme; 25.4 47 0.0016 31.0 3.4 27 225-251 347-375 (404)
59 1jei_A Emerin; membrane protei 22.7 28 0.00095 24.2 1.0 12 230-241 13-24 (53)
60 2lbg_A Major prion protein; co 21.4 1E+02 0.0035 18.6 3.1 20 49-68 6-25 (27)
No 1
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=99.40 E-value=6.4e-14 Score=104.85 Aligned_cols=54 Identities=26% Similarity=0.476 Sum_probs=52.2
Q ss_pred HHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCCchHHHHHhhhh
Q 025019 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~~~~~ 251 (259)
...||++|||++|..+|+++.++.++|++||+++|+++|||+|||++||++|++
T Consensus 5 v~~wL~~lgL~~Y~~~F~~~~id~e~l~~lt~~DL~~lGI~~G~RkkIl~ai~~ 58 (74)
T 3k1r_B 5 LETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPREKILGAVRR 58 (74)
T ss_dssp HHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCcCHHHHhHCCHHHHHHcCCCcchHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999987
No 2
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=99.02 E-value=1.5e-10 Score=86.22 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=52.1
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
-...||+.+||++|..+|++..++..+|+.||+++|+++||+ +|||++||..|+.
T Consensus 9 ~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~ 64 (76)
T 2f3n_A 9 DVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQ 64 (76)
T ss_dssp HHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCChhHHHHHHHHHHH
Confidence 455799999999999999999999999999999999999998 9999999999986
No 3
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=98.95 E-value=2e-10 Score=88.62 Aligned_cols=57 Identities=21% Similarity=0.414 Sum_probs=54.1
Q ss_pred HHHHHHHHhhh-CchhhHHhhhhccCCCCcccCCChhhh-hcCCCCCCchHHHHHhhhh
Q 025019 195 YARTRGMLDKL-GLQNYTKNFKRGLLTDSTLPLLTDSAL-RDVRIPPGPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~l-g~~~y~~~~~~~~~~~~~l~~~~~~~l-~~~~ip~gpr~~il~~~~~ 251 (259)
.+....||+++ |+++|...|++..|+-.+|++||+++| ++++|+.|||++|+++|++
T Consensus 19 ~edV~~wL~~l~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgIklG~r~kI~~~I~~ 77 (89)
T 1kw4_A 19 VDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVES 77 (89)
T ss_dssp HHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55678999999 999999999999999999999999999 8999999999999999986
No 4
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=98.94 E-value=1.7e-10 Score=84.81 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=52.1
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
....||+.+||++|..+|++..++..+|+.||+++|++++|+ +|||++|++.|+.
T Consensus 11 ~V~~WL~~~gl~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~ 66 (74)
T 2gle_A 11 QVSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKE 66 (74)
T ss_dssp GGHHHHHHTTTHHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999 9999999999875
No 5
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=98.91 E-value=4.3e-10 Score=84.60 Aligned_cols=56 Identities=27% Similarity=0.322 Sum_probs=52.6
Q ss_pred HHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCC-CCCchHHHHHhhhh
Q 025019 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 196 ~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~i-p~gpr~~il~~~~~ 251 (259)
+-...||+.+||++|..+|++..++..+|..||+++|++++| ++|||++||..|+.
T Consensus 13 ~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~ 69 (81)
T 3bq7_A 13 EEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKE 69 (81)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHcCCCHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHH
Confidence 356679999999999999999999999999999999999999 78999999999976
No 6
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=2.4e-10 Score=87.41 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccCC-CCcccCCChhhhhcCCCCC-CchHHHHHhhhh
Q 025019 195 YARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~~-~~~l~~~~~~~l~~~~ip~-gpr~~il~~~~~ 251 (259)
+.-...||..|||++|..+|.+..++ .+.|..||+++|++++|+. |+|.+||..|+.
T Consensus 12 ~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~ 70 (88)
T 2e8n_A 12 FRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLG 70 (88)
T ss_dssp CSSHHHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHH
Confidence 45677899999999999999999999 6899999999999999995 999999999875
No 7
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=98.89 E-value=3.6e-10 Score=85.39 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=53.1
Q ss_pred HHHHHHHHhhhCchhhHHhhhhcc-CCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 195 YARTRGMLDKLGLQNYTKNFKRGL-LTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~-~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
+.....||+++||++|..+|.+.. ++.+.|..||+++|+++||+ +|+|.+||..|+.
T Consensus 15 ~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~ 73 (83)
T 2qkq_A 15 FGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQH 73 (83)
T ss_dssp CSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTT
T ss_pred cchHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 346678999999999999999988 89999999999999999999 9999999999976
No 8
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=98.88 E-value=1.3e-09 Score=83.03 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccCC-CCcccCCChhhhhcCCCCC-CchHHHHHhhhh
Q 025019 195 YARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~~-~~~l~~~~~~~l~~~~ip~-gpr~~il~~~~~ 251 (259)
+.....||+.|||++|..+|.+..++ .+.|..||+++|+++||+. |+|.+||..|+.
T Consensus 23 ~~~V~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq~ 81 (82)
T 3hil_A 23 YRTVSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQG 81 (82)
T ss_dssp CSSHHHHHHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCHHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 34567899999999999999999898 8889999999999999985 999999999974
No 9
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=98.87 E-value=4e-10 Score=85.52 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhhCchhhHHhhhhccCC-CCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 194 YYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 194 ~y~r~~~~l~~lg~~~y~~~~~~~~~~-~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
.+.....||.++||++|..+|.+..++ .+.|..||+++|++++|+ +|+|.+||..|+.
T Consensus 15 ~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~ 74 (82)
T 2kso_A 15 SHMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLG 74 (82)
T ss_dssp ---CHHHHHHHTTCTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHH
T ss_pred CcchHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHH
Confidence 455667799999999999999999999 699999999999999999 5999999999875
No 10
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=98.86 E-value=7.7e-10 Score=83.28 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=51.1
Q ss_pred HHHHHHHhhhCchhhHHhhhhccC-CCCcccCCChhhhhcCCCCC-CchHHHHHhhhh
Q 025019 196 ARTRGMLDKLGLQNYTKNFKRGLL-TDSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (259)
Q Consensus 196 ~r~~~~l~~lg~~~y~~~~~~~~~-~~~~l~~~~~~~l~~~~ip~-gpr~~il~~~~~ 251 (259)
.....||+++||++|..+|.+..+ +.+.|..||+++|++++|+. |+|.+||..|+.
T Consensus 12 ~~v~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~ 69 (82)
T 1b4f_A 12 NTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQV 69 (82)
T ss_dssp SSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456679999999999999999999 56889999999999999995 999999999875
No 11
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.8e-09 Score=80.97 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=49.9
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCCCc-c--cCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLTDST-L--PLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~~~-l--~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
....||..|||++|..+|.+..+++.. | ..||+++|++++|+ +|+|.+||..|+.
T Consensus 14 ~V~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~ 72 (80)
T 2eam_A 14 TVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQL 72 (80)
T ss_dssp CHHHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 355699999999999999999998765 5 69999999999998 8999999999986
No 12
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=98.83 E-value=9.3e-10 Score=82.95 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=50.8
Q ss_pred HHHHHHhhhCchhhHHhhhhccCC-CCcccCCChhhhhcCCCCC-CchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~-~~~l~~~~~~~l~~~~ip~-gpr~~il~~~~~ 251 (259)
....||..+||++|..+|.+..++ .+.|..||+++|++++|+. |+|.+||..|+.
T Consensus 9 ~V~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~ 65 (81)
T 1ucv_A 9 TVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQT 65 (81)
T ss_dssp BHHHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHH
Confidence 345699999999999999999999 6899999999999999995 999999999975
No 13
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=98.77 E-value=1.9e-09 Score=83.48 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccC-CCCcccCCChhhhhcCCCCC-CchHHHHHhhhh
Q 025019 195 YARTRGMLDKLGLQNYTKNFKRGLL-TDSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~-~~~~l~~~~~~~l~~~~ip~-gpr~~il~~~~~ 251 (259)
+.-...||..|||++|..+|.+..+ +.+.|..||+++|+++||+. |+|.+||..|+.
T Consensus 26 ~~~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~ 84 (94)
T 1b0x_A 26 VVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQA 84 (94)
T ss_dssp SCCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHCCcHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHH
Confidence 3456679999999999999999999 67899999999999999996 999999999875
No 14
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=98.77 E-value=2.3e-09 Score=82.96 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhCchhhHHhhhhccCC-CCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 194 YYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 194 ~y~r~~~~l~~lg~~~y~~~~~~~~~~-~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
.+.....||+.|||++|..+|.+..++ .+.|..||+++|+++||+ +|+|.+||..|+.
T Consensus 24 ~~~~V~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~ 83 (90)
T 3h8m_A 24 TFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQT 83 (90)
T ss_dssp CCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHCChHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999998 788999999999999998 5999999999975
No 15
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=98.77 E-value=1.6e-09 Score=85.36 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=51.8
Q ss_pred HHHHHHhhhCchhhHHhhhhccCC-CCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~-~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
-...||..|||++|..+|.+..++ .+.|..||+++|++++|+ +|+|.+||..|+.
T Consensus 28 ~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~ 84 (100)
T 2kg5_A 28 DIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQT 84 (100)
T ss_dssp BHHHHHGGGTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHCCCHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHH
Confidence 467899999999999999999999 699999999999999999 6999999999986
No 16
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=98.76 E-value=2e-09 Score=82.66 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhhCchhhHHhhhhccCC-CCcccCCChhhhhcCCCCC-CchHHHHHhhhh
Q 025019 193 VYYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (259)
Q Consensus 193 ~~y~r~~~~l~~lg~~~y~~~~~~~~~~-~~~l~~~~~~~l~~~~ip~-gpr~~il~~~~~ 251 (259)
..+.....||+.|||++|..+|....++ .+.|..||+++|+++||+. |+|.+||..|+.
T Consensus 19 ~~~~~V~~WL~~lgL~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~ 79 (86)
T 3kka_C 19 VPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLG 79 (86)
T ss_dssp ----CHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3455678999999999999999999998 5889999999999999986 999999999975
No 17
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.4e-09 Score=85.02 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccCC-CCcccCCChhhhhcCCCCC-CchHHHHHhhhh
Q 025019 195 YARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIPP-GPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~~-~~~l~~~~~~~l~~~~ip~-gpr~~il~~~~~ 251 (259)
+.....||+.|||++|..+|.+..++ .+.|..||+++|++++|+. |+|.+||..|+.
T Consensus 22 ~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~ 80 (99)
T 2eao_A 22 FTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHS 80 (99)
T ss_dssp CCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCcHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHH
Confidence 45677899999999999999999999 7899999999999999995 999999999975
No 18
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=98.71 E-value=4.6e-09 Score=81.00 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=49.4
Q ss_pred HHHHHhhhCchhhHHhhhhccCC-CCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 198 TRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~~~~~~-~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
...||..|||++|..+|.+..++ .+.|..||+++|++++|. +|+|.+||..|+.
T Consensus 18 V~~WL~~lgL~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~ 73 (91)
T 1x40_A 18 IKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQI 73 (91)
T ss_dssp HHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHH
Confidence 45799999999999999998885 688999999999999996 8999999999875
No 19
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=98.69 E-value=6.3e-09 Score=79.93 Aligned_cols=53 Identities=25% Similarity=0.439 Sum_probs=48.6
Q ss_pred HHHHhhhCchhhHHhhhhccCCC-CcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 199 RGMLDKLGLQNYTKNFKRGLLTD-STLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 199 ~~~l~~lg~~~y~~~~~~~~~~~-~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
..||..|||++|..+|....+++ +.|..+|+++|++++|+ +|+|.+||..|+.
T Consensus 30 ~eWL~~lgL~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~ 84 (86)
T 2k4p_A 30 SAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQL 84 (86)
T ss_dssp HHHHHTTTCGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 34999999999999999999864 89999999999999998 6999999999874
No 20
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=98.68 E-value=1.1e-08 Score=80.74 Aligned_cols=56 Identities=25% Similarity=0.393 Sum_probs=49.9
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCC-Cccc--CCChhhhhcCCCC-CCchHHHHHhhhhC
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLTD-STLP--LLTDSALRDVRIP-PGPRLLILDHIQRD 252 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~-~~l~--~~~~~~l~~~~ip-~gpr~~il~~~~~~ 252 (259)
....||..|||++|..+|....+++ +.|. .||+++|++++|+ +|+|.+||..|+.=
T Consensus 31 ~V~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~L 90 (101)
T 2lmr_A 31 SVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSL 90 (101)
T ss_dssp CHHHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHTS
T ss_pred cHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 3456999999999999999999985 5677 8999999999999 69999999999873
No 21
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=98.67 E-value=5.6e-09 Score=77.74 Aligned_cols=55 Identities=29% Similarity=0.450 Sum_probs=51.4
Q ss_pred HHHHHHhhh--CchhhHHhhhhccCCCCcccCCChhhhhcCCC-CCCchHHHHHhhhh
Q 025019 197 RTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~l--g~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~i-p~gpr~~il~~~~~ 251 (259)
....||+.+ ||++|..+|++..++...|+.||+++|++++| ++|+|.+|++.|+.
T Consensus 11 ~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~ 68 (80)
T 3bs5_B 11 QVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDL 68 (80)
T ss_dssp HHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 567899999 69999999999999999999999999999999 68999999999875
No 22
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.8e-08 Score=79.00 Aligned_cols=58 Identities=26% Similarity=0.393 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhCchh--hHHhhhhccCCCCcccCCChhhhhcCCC-CCCchHHHHHhhhh
Q 025019 194 YYARTRGMLDKLGLQN--YTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 194 ~y~r~~~~l~~lg~~~--y~~~~~~~~~~~~~l~~~~~~~l~~~~i-p~gpr~~il~~~~~ 251 (259)
.-+....||+.+||++ |..+|++..|+-..|..||+++|++++| ..|+|++|+++|+.
T Consensus 31 s~~~V~~WL~~lgl~~~~y~~~F~~~~I~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~ 91 (103)
T 2e8o_A 31 GPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQR 91 (103)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTCCTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567889999999998 9999999999999999999999999999 78999999999976
No 23
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=7.2e-09 Score=77.88 Aligned_cols=55 Identities=29% Similarity=0.450 Sum_probs=51.6
Q ss_pred HHHHHHhhh--CchhhHHhhhhccCCCCcccCCChhhhhcCCC-CCCchHHHHHhhhh
Q 025019 197 RTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~l--g~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~i-p~gpr~~il~~~~~ 251 (259)
....||+.+ ||++|..+|++..++...|..||+++|++++| ++|+|.+||+.|+.
T Consensus 15 ~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~ 72 (83)
T 2ean_A 15 QVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDL 72 (83)
T ss_dssp HHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 577899999 69999999999999999999999999999999 68999999999975
No 24
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=98.52 E-value=2.1e-08 Score=78.83 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=49.6
Q ss_pred HHHHHhhhCchhhHHhhhhccCCCCcc---cCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 198 TRGMLDKLGLQNYTKNFKRGLLTDSTL---PLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~~~~~~~~~l---~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
...||.++||++|..+|.+..+++..+ ..||+++|+++||. +|.|.+||..|+.
T Consensus 25 V~~WL~~igL~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~ 82 (103)
T 2ke7_A 25 VGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQL 82 (103)
T ss_dssp TTHHHHHTTCTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHH
Confidence 345999999999999999999998765 69999999999998 8999999999987
No 25
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=98.51 E-value=2.9e-08 Score=77.00 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=50.5
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
+.-...||++|+|.||..+|.. ++.+++..|||++|+++||= .|.|.+||..|+.
T Consensus 18 ~~~V~~WL~sLrLhKY~~~F~~--~~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~ 73 (88)
T 2d3d_A 18 LKNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGI 73 (88)
T ss_dssp HTCHHHHHHHTTCGGGHHHHTT--SCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcccchhHHHHhc--CCHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHH
Confidence 4457899999999999999975 78899999999999999999 9999999999875
No 26
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=98.51 E-value=4.4e-08 Score=81.66 Aligned_cols=62 Identities=23% Similarity=0.257 Sum_probs=57.7
Q ss_pred chhHHHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 190 ADDVYYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 190 ~~d~~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
++...+.....||..+||++|..+|....++.++|..||+++|+++||. ||+|.+||.+|+.
T Consensus 5 ~~~~~~~~V~~WL~~lgL~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~ 67 (149)
T 3sei_A 5 REGKSSEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISG 67 (149)
T ss_dssp HHHHHHHHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHT
T ss_pred cccCcHHHHHHHHHHCCcHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5666788899999999999999999999999999999999999999998 6999999999987
No 27
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=98.45 E-value=4.5e-08 Score=73.44 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=48.9
Q ss_pred HHHHHhhhCchhhHHhhhhccC-CCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 198 TRGMLDKLGLQNYTKNFKRGLL-TDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~~~~~-~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
...||..+||++|..+|...-+ +.+.+..+|+++|++++|. ||.|.+||..|+.
T Consensus 15 V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~ 70 (78)
T 1v38_A 15 IQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAES 70 (78)
T ss_dssp HHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4459999999999999988777 4688999999999999998 7999999999875
No 28
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=98.45 E-value=5.3e-08 Score=72.09 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=51.6
Q ss_pred HHHHHHhhh--CchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 197 RTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~l--g~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
....||+.+ |+++|..+|++..++-..|+.||+++|++++|. +|+|.+|+++|+.
T Consensus 10 ~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~ 67 (78)
T 3bs7_A 10 DVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVK 67 (78)
T ss_dssp HHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHH
Confidence 567899998 999999999999999999999999999999996 8999999999875
No 29
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.5e-07 Score=73.64 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhhCchhhHHhhhhccCC-CCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 194 YYARTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 194 ~y~r~~~~l~~lg~~~y~~~~~~~~~~-~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
.+.-...||..+||++|..+|...-++ .+.|..|++++|++++|. +|.|.+||..|+.
T Consensus 22 ~~~sV~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~ 81 (97)
T 2dl0_A 22 CISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARL 81 (97)
T ss_dssp CCCSHHHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 344566799999999999999988888 489999999999999997 8999999999976
No 30
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=98.34 E-value=1.6e-07 Score=72.50 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=52.8
Q ss_pred HHHHHHHHhhh--CchhhHHhhhhccCCCCcccCCChhhh-hcCCCCCCchHHHHHhhhh
Q 025019 195 YARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSAL-RDVRIPPGPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~l--g~~~y~~~~~~~~~~~~~l~~~~~~~l-~~~~ip~gpr~~il~~~~~ 251 (259)
.+....||+++ |+++|.+.|++..||=.+|.+||+++| ++++|+.|||++|.++|++
T Consensus 19 vedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~~dl~~~mgiklGpalKi~~~I~~ 78 (89)
T 1pk1_B 19 IEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLKLGPALKICNLVNK 78 (89)
T ss_dssp HHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCHHHHHHccCCCccHHHHHHHHHHH
Confidence 55778899999 899999999999999999999999998 5699999999999999976
No 31
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=98.34 E-value=1.1e-07 Score=75.39 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=50.6
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
+.-...||++|+|.||..+|.. ++.+++..|||++|+++||= .|.|.+||..|+.
T Consensus 31 ~~dV~~WLksLrLhKY~~~F~~--~~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~ 86 (101)
T 2es6_A 31 LKNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGI 86 (101)
T ss_dssp HTCHHHHHHTTTCCCTHHHHTT--SCHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHccCcchHHHHcc--CCHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHH
Confidence 4557899999999999999976 68899999999999999999 9999999999875
No 32
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=98.32 E-value=9.8e-08 Score=73.53 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=52.4
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCC-CcccCCChhhhhcCCC-CCCchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLTD-STLPLLTDSALRDVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~-~~l~~~~~~~l~~~~i-p~gpr~~il~~~~~ 251 (259)
....||.++|+++|...|....+++ +.|+.|+++.|+|+|| ..|.|++||.+++.
T Consensus 17 ~v~~wL~si~c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~ 73 (85)
T 1ow5_A 17 FVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKS 73 (85)
T ss_dssp HHHHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHH
Confidence 7889999999999999999999999 9999999999999999 57999999999865
No 33
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=98.31 E-value=1.6e-07 Score=78.31 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=53.1
Q ss_pred HHHHHHhhhCchhhHHhhhhccCC-CCcccCCChhhhhcCCCC-CCchHHHHHhhhhCccc
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLT-DSTLPLLTDSALRDVRIP-PGPRLLILDHIQRDPEL 255 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~-~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~~~~~ 255 (259)
....||..+||++|..+|....++ .+.|..+|+++|+++||. +|+|.+||..|+.-.++
T Consensus 81 ~v~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~l~~~ 141 (149)
T 3sei_A 81 NLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAEL 141 (149)
T ss_dssp CHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCchhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999998 589999999999999997 89999999999864433
No 34
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.8e-07 Score=76.18 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 194 YYARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 194 ~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
.+.-...||+.|||.||..+|+ .++.+.++.|+|++|++++|. .|+|.+||..|+.
T Consensus 48 ~~~dV~~WL~sLrL~KY~~~F~--~~~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~ 104 (119)
T 2b6g_A 48 LLKNIPMWLKSLRLHKYSDALS--GTPWIELIYLDDETLEKKGVLALGARRKLLKAFGI 104 (119)
T ss_dssp HHHCHHHHHHHHTCHHHHHHHT--TSCHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHCCChhHHHHHc--cCCHHHHHhcCHHHHHHCCCCccccHHHHHHHHHH
Confidence 3555668999999999999994 479999999999999999998 9999999998864
No 35
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=98.29 E-value=3.7e-07 Score=75.60 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=49.5
Q ss_pred HHHHHhhhCchhhHHhhhhccCCC-Cccc--CCChhhhhcCCCC-CCchHHHHHhhhhC
Q 025019 198 TRGMLDKLGLQNYTKNFKRGLLTD-STLP--LLTDSALRDVRIP-PGPRLLILDHIQRD 252 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~~~~~~~-~~l~--~~~~~~l~~~~ip-~gpr~~il~~~~~~ 252 (259)
...||..+||++|..+|.+..+++ +.+. .||+++|+++||. +|.|.+||..|+.-
T Consensus 17 V~~WL~~igL~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~L 75 (148)
T 2kiv_A 17 VGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLL 75 (148)
T ss_dssp HHHHHHHHSCTTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 456999999999999999999988 4555 8999999999998 89999999999873
No 36
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=98.21 E-value=4e-07 Score=72.01 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=53.5
Q ss_pred HHHHHHHHhhh--CchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 195 YARTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~l--g~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
.+....||+.+ |+++|..+|++-.++-..|+.||+++|++++|. +|+|++|+..|+.
T Consensus 28 ~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~ 87 (106)
T 3bs5_A 28 VSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVK 87 (106)
T ss_dssp HHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhCCHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 55778999999 999999999999999999999999999999995 7999999999975
No 37
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=98.11 E-value=9.8e-07 Score=73.04 Aligned_cols=57 Identities=26% Similarity=0.308 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccCCC-CcccCCChhhh-hcCCCC-CCchHHHHHhhhh
Q 025019 195 YARTRGMLDKLGLQNYTKNFKRGLLTD-STLPLLTDSAL-RDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~~~-~~l~~~~~~~l-~~~~ip-~gpr~~il~~~~~ 251 (259)
......||..+||++|..+|....+++ +.|..+|+++| ++++|+ +|.|++||..|+.
T Consensus 88 ~~~v~~WL~~i~L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~~ 147 (148)
T 2kiv_A 88 PTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGD 147 (148)
T ss_dssp CSSHHHHHHTTTCCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHTC
T ss_pred cchHHHHHHHCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHhh
Confidence 346677999999999999999999965 89999999997 999995 9999999999874
No 38
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=98.09 E-value=9.2e-07 Score=67.80 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=53.0
Q ss_pred HHHHHHHHhhhCc--hhhHHhhhhccCCCCcccCCChhhhhc--CCCC-CCchHHHHHhhhh
Q 025019 195 YARTRGMLDKLGL--QNYTKNFKRGLLTDSTLPLLTDSALRD--VRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~--~~y~~~~~~~~~~~~~l~~~~~~~l~~--~~ip-~gpr~~il~~~~~ 251 (259)
.+....||+.+|+ ++|..+|++..++-..|..||+++|++ ++|- .|.|.+||..|++
T Consensus 22 ~~dV~~WL~~~gl~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~ 83 (91)
T 1v85_A 22 TEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELER 83 (91)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHH
Confidence 4467899999999 999999999999999999999999998 9996 6999999999976
No 39
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=97.96 E-value=1.9e-06 Score=67.42 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=49.6
Q ss_pred HHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhc--CCC-CCCchHHHHHhhhh
Q 025019 196 ARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRD--VRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 196 ~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~--~~i-p~gpr~~il~~~~~ 251 (259)
+....||+++||++|...| +. |+=.+|..||+++|++ ++| ..|+|++|+.+|++
T Consensus 23 edV~~WL~~~Gl~~Y~~~F-~~-IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~ 79 (97)
T 2d8c_A 23 KKVADWLLENAMPEYCEPL-EH-FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIET 79 (97)
T ss_dssp THHHHHHHHTTCTTTTTTT-TT-CCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH-Hc-CCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999 44 9999999999999999 998 79999999999975
No 40
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=97.91 E-value=2.7e-06 Score=73.09 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=48.7
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCCchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~~~~~ 251 (259)
-...||++|+|.||..+|.. ++.+++..|||++|+++||=.|.|.+||..|+.
T Consensus 9 dV~~WLksLrLhKY~~~F~~--~~~e~~~~LTdedL~~~GVT~GARrKIL~aIq~ 61 (173)
T 1oxj_A 9 GIGLWLKSLRLHKYIELFKN--MTYEEMLLITEDFLQSVGVTKGASHKLALCIDK 61 (173)
T ss_dssp THHHHHHHTTCGGGGGGGTT--CCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcccchhHHHHcc--CCHHHHHhcCHHHHHHCCCchHHHHHHHHHHHH
Confidence 34589999999999999976 788999999999999999999999999998864
No 41
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=97.74 E-value=1.9e-05 Score=60.21 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=49.3
Q ss_pred HHHHHhhhCchhhHHhhh-hccCCCCcccCCChhhhhcCCCCCCchHHHHHhhhh
Q 025019 198 TRGMLDKLGLQNYTKNFK-RGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~-~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~~~~~ 251 (259)
.-.||..+++.+|..||. .|.-+.+.+-.||-++|+.+|||.|.|.+||.-|+.
T Consensus 9 V~~WLd~i~m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~mGIt~gHqkkIl~siq~ 63 (82)
T 2y9t_A 9 IVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILD 63 (82)
T ss_dssp HHHHHHHHTCGGGHHHHHTTTCCBSGGGTTCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHcCCCcHHHHHhcCHHHHHhcCCChhhHHHHHhhHHH
Confidence 457999999999999975 577889999999999999999999999999998864
No 42
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=97.72 E-value=1.1e-05 Score=59.61 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=48.7
Q ss_pred HHHHHhhhCchhhHHhhh-hccCCCCcccCCChhhhhcCCCCCCchHHHHHhhhh
Q 025019 198 TRGMLDKLGLQNYTKNFK-RGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~-~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~~~~~ 251 (259)
.-.||..+++.+|..||. .|.-+.+.+..||-++|+.++||.|.|.+||.-|+.
T Consensus 7 v~~WLd~i~m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~~GIt~ghqkkIl~siq~ 61 (69)
T 2y9u_A 7 IVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILD 61 (69)
T ss_dssp HHHHHHTTTCGGGHHHHHTTTCCBHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHcCCCcHHHHHHcCHHHHHhcCCChhhHHHHHHhHHH
Confidence 357999999999999985 577788999999999999999999999999998864
No 43
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=97.29 E-value=4.2e-05 Score=59.04 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=48.3
Q ss_pred HHHHHHhhh--CchhhHHhhhhccCCCCcccCCChhhhhcCCC-CCCchHHHHHhhhh
Q 025019 197 RTRGMLDKL--GLQNYTKNFKRGLLTDSTLPLLTDSALRDVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~l--g~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~i-p~gpr~~il~~~~~ 251 (259)
..-.||+.| ++.+| +|++..|+-..|..||+++|++++| ..|-|.+||+.|+.
T Consensus 18 ~V~~WL~~l~~~l~~Y--~F~~~~I~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~ 73 (91)
T 1wwv_A 18 KVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQ 73 (91)
T ss_dssp THHHHHHHHCHHHHTS--CHHHHCCCHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccc--cHHhcCccHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHH
Confidence 456889966 89999 8999999999999999999999999 68999999999976
No 44
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=97.25 E-value=9.3e-05 Score=67.32 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=51.8
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~ 251 (259)
-...||..+||.+|...|..-.++-..|+.||+++|++++|. +|+|.+|+..|+.
T Consensus 94 wv~~WL~~IGL~QY~~~F~~~~iDg~~L~~LT~~DL~~LGIt~~~HR~kil~aI~~ 149 (265)
T 3tad_C 94 WVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQV 149 (265)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHTCCHHHHHTCBHHHHHHTTCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHcCCCHHHhcccCHHHHHHcCCCcHHhHHHHHHHHHH
Confidence 346999999999999999999999999999999999999998 8999999999976
No 45
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.00023 Score=53.19 Aligned_cols=44 Identities=32% Similarity=0.607 Sum_probs=42.7
Q ss_pred hhhHHhhhhccCCCCcccCCChhhhhcCCCCCCchHHHHHhhhh
Q 025019 208 QNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251 (259)
Q Consensus 208 ~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~~~~~ 251 (259)
++|..+|.+..++.+.||-+|.|-||++||-.|=-++||+|++.
T Consensus 20 ~rYA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVmk~l~~ 63 (72)
T 3idw_A 20 QRYTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVMKHLDK 63 (72)
T ss_dssp HHHHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999975
No 46
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=95.89 E-value=0.0028 Score=57.64 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=52.3
Q ss_pred HHHHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhh-cCCC-CCCchHHHHHhhhh
Q 025019 195 YARTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALR-DVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 195 y~r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~-~~~i-p~gpr~~il~~~~~ 251 (259)
-+....||..+||++|..+|++-..+-.+|-.|||.+|+ |++| -|+=|+||+.+|+.
T Consensus 20 ~e~V~~WLe~~GL~~Y~~~f~~n~~dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~e 78 (265)
T 3tad_C 20 KEQVCSWLAEQGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQA 78 (265)
T ss_dssp HHHHHHHHHHTTCCTTHHHHTTTCSCSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCHHHHHHHHHHhCCchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999995 9998 58999999999986
No 47
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=92.93 E-value=0.067 Score=44.85 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=42.7
Q ss_pred HHHHHHHhh-hCchhhHHhhhhccCCCCcccCCChhh----hhcCCC-CCCchHHHH
Q 025019 196 ARTRGMLDK-LGLQNYTKNFKRGLLTDSTLPLLTDSA----LRDVRI-PPGPRLLIL 246 (259)
Q Consensus 196 ~r~~~~l~~-lg~~~y~~~~~~~~~~~~~l~~~~~~~----l~~~~i-p~gpr~~il 246 (259)
+-...||.. +||++|.+.|++-.||=.+||.|+++. +.++|| +++=|-+|.
T Consensus 84 edV~~WL~~~v~LpqY~~~Fr~~~IdG~~LprL~~~~~~~L~~~LGI~~~~hR~Kl~ 140 (150)
T 2l5y_A 84 EDTLQWLIEFVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDRSHRQKLQ 140 (150)
T ss_dssp HHHHHHHHHHTCCTTSHHHHHHHHCSSSTTTTCCSSSCCSTTTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHcCCCHHHhhhhhhcchHHHHHHhCCCCHHHHHHHH
Confidence 456678877 699999999999999999999999854 569998 677777765
No 48
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=92.27 E-value=0.058 Score=50.53 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=47.7
Q ss_pred HHHHHhhhCchhhHHhhhhccCCCCcccCCChhhh-hcCCC-CCCchHHHHHhhh
Q 025019 198 TRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSAL-RDVRI-PPGPRLLILDHIQ 250 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l-~~~~i-p~gpr~~il~~~~ 250 (259)
++.+|..+||++|...|..-.++-..|..||+++| .+++| =+..|..|+.-|+
T Consensus 166 ~~~WL~dIGLpQY~~~F~~~~VDgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~ 220 (334)
T 3tac_B 166 GNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIM 220 (334)
T ss_dssp HHTHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred hhhhccccChHHhHHHHHhcCcchhhhhhccHHHHHhccCCCcHHHHHHHHHHHH
Confidence 66899999999999999999999999999999999 68888 4678888887774
No 49
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=89.65 E-value=0.076 Score=44.53 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=39.8
Q ss_pred HHHHHH-hhhCchhhHHhhhhccCCCCcccCCChhh---h-hcCCC-CCCchHHH
Q 025019 197 RTRGML-DKLGLQNYTKNFKRGLLTDSTLPLLTDSA---L-RDVRI-PPGPRLLI 245 (259)
Q Consensus 197 r~~~~l-~~lg~~~y~~~~~~~~~~~~~l~~~~~~~---l-~~~~i-p~gpr~~i 245 (259)
-+..|| ...+|++|...|++-.||=.+||.|+++. | .++|| +++=|-+|
T Consensus 85 dV~~WL~~~v~LpqY~~~Fr~~~I~G~~LprLa~~~~~~L~~~LgI~~~~hRqKl 139 (150)
T 2k60_A 85 EVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKL 139 (150)
T ss_dssp HHHHHHHHHHCCTTHHHHHHHHCCSTTHHHHHSSCHHHHCSSCSCSCHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHcCCCHHHHHhhccccHHHHHHhcCCCCHHHHHHH
Confidence 456777 45599999999999999999999999983 4 88899 55656555
No 50
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=86.72 E-value=0.26 Score=46.13 Aligned_cols=56 Identities=21% Similarity=0.377 Sum_probs=50.1
Q ss_pred HHHHHHHhh-hCchh-hHHhhhhccCCCCcccCCChhhhh-cCCC-CCCchHHHHHhhhh
Q 025019 196 ARTRGMLDK-LGLQN-YTKNFKRGLLTDSTLPLLTDSALR-DVRI-PPGPRLLILDHIQR 251 (259)
Q Consensus 196 ~r~~~~l~~-lg~~~-y~~~~~~~~~~~~~l~~~~~~~l~-~~~i-p~gpr~~il~~~~~ 251 (259)
.....+|+. +|++. |..+|+.-..+-.+|--+||.+|. |++| .|+=|+||+..|+.
T Consensus 42 ~~V~aWLe~~iGmp~~Yv~~~r~nvkSG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqe 101 (334)
T 3tac_B 42 PTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQE 101 (334)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHCCSHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHccchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 356789999 89997 999999999999999999999995 9997 68889999998876
No 51
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=86.47 E-value=0.4 Score=36.31 Aligned_cols=52 Identities=29% Similarity=0.349 Sum_probs=45.0
Q ss_pred HHHHHhhhCchhhHHhhh-hccCCCCcccCCChhhhhcCCCCCCchHHHHHhh
Q 025019 198 TRGMLDKLGLQNYTKNFK-RGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHI 249 (259)
Q Consensus 198 ~~~~l~~lg~~~y~~~~~-~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~~~ 249 (259)
...||.+||+.+|.++|+ +|+-+.--|--++=++|..++||-.=|-+|-.-+
T Consensus 9 v~s~Lt~LGc~~~Id~F~~qgl~~i~qL~~~~ledL~~mkIpe~~R~kIWk~l 61 (80)
T 1dxs_A 9 LVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGL 61 (80)
T ss_dssp HHHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCCTTTHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHcCcccchhhccCCHHHHHhCCCCHHHHHHHHhhH
Confidence 458999999999999986 5677777888899999999999999998887655
No 52
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.83 E-value=0.74 Score=35.15 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhCchh-hHHhhhhccCCCCcccCCChhhhh-cCCCCCCchHHHHHhhh
Q 025019 195 YARTRGMLDKLGLQN-YTKNFKRGLLTDSTLPLLTDSALR-DVRIPPGPRLLILDHIQ 250 (259)
Q Consensus 195 y~r~~~~l~~lg~~~-y~~~~~~~~~~~~~l~~~~~~~l~-~~~ip~gpr~~il~~~~ 250 (259)
.+-.-.+|..+||.. |...|+.+.|+=+-|--|+++.|+ |+++.+==+++|++.|+
T Consensus 20 v~EVs~~Lr~igL~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~ls~Lq~kKi~~fI~ 77 (84)
T 2dkz_A 20 IEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKIMQFIN 77 (84)
T ss_dssp HHHHHHHGGGTCCCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHccchHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 556778999999996 579999999999999999999995 59998888899999986
No 53
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.45 E-value=1.4 Score=33.98 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=43.2
Q ss_pred HHHHHHhhhCchhhHHhhhhccCCCCcccCCChhhhhcCCCCCCchHHHHHhhhh
Q 025019 197 RTRGMLDKLGLQNYTKNFKRGLLTDSTLPLLTDSALRDVRIPPGPRLLILDHIQR 251 (259)
Q Consensus 197 r~~~~l~~lg~~~y~~~~~~~~~~~~~l~~~~~~~l~~~~ip~gpr~~il~~~~~ 251 (259)
....+|+++|+..-++..+|-.||=..|--||+.|||. ||-+|.-|+-.|.+
T Consensus 26 ~VadWLkk~g~~~cd~lv~Kh~IDG~~lL~LtE~Dlrk---~Pkl~~p~~~k~~q 77 (90)
T 2eap_A 26 SLADYFKKLNYKDCEKAVKKYHIDGARFLNLTENDIQK---FPKLRVPILSKLSQ 77 (90)
T ss_dssp THHHHHHHTTCHHHHHHHHHTTCCHHHHHTCCHHHHTT---SCTTTHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHhccCchhhhcccHHHhcc---CCccccHHHHHHHH
Confidence 45679999999997777778889999999999999998 89988877765543
No 54
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=58.39 E-value=2.3 Score=32.49 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=48.9
Q ss_pred HHHHHH-hhhCchh---hHHhhhhccCCCCcccCCChhhhhcCCCC-CCchHHHHHhhhh--CcccccC
Q 025019 197 RTRGML-DKLGLQN---YTKNFKRGLLTDSTLPLLTDSALRDVRIP-PGPRLLILDHIQR--DPELKKS 258 (259)
Q Consensus 197 r~~~~l-~~lg~~~---y~~~~~~~~~~~~~l~~~~~~~l~~~~ip-~gpr~~il~~~~~--~~~~~~~ 258 (259)
...+++ .+||++. ...+|+.-.|+=++||.|+-.+|||+.|- .|=|.++...|.+ |.+|..+
T Consensus 16 ~V~~W~~~~lg~~d~d~~~~~f~~ndItG~vL~eL~leDlKEL~i~s~~~r~~lk~~In~Lr~~~l~~~ 84 (85)
T 1uqv_A 16 DVITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQDLCDGDLNKAIKFKILINKMRDSKLEWK 84 (85)
T ss_dssp HHHHHHHHHHSSCTTSTHHHHHHHSCCCGGGHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHcCCchhhHHHcCHHHHHHhCchHHHHHHHHHHHHHHHHHhhcccC
Confidence 345666 8899987 56789999999999999999999999995 4668777766653 5555543
No 55
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=32.70 E-value=22 Score=33.92 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=22.5
Q ss_pred ccC-CChhhhhcCCCCCCchH-HHHHhhhh
Q 025019 224 LPL-LTDSALRDVRIPPGPRL-LILDHIQR 251 (259)
Q Consensus 224 l~~-~~~~~l~~~~ip~gpr~-~il~~~~~ 251 (259)
-|+ +|=.+|.+.|++|||.+ .||+.++.
T Consensus 374 ~~~~i~G~DLi~~G~~PGP~~G~iL~~l~~ 403 (441)
T 3h38_A 374 KLEKINGEYLIRKGITSGKIIGEVLEKILM 403 (441)
T ss_dssp CSCSSCCHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 355 89999999999999987 46776653
No 56
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=29.50 E-value=50 Score=19.64 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHhHHHHH
Q 025019 17 KAIKDVQFKLKELENGYK 34 (259)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~ 34 (259)
+.+|++|+|++.|...++
T Consensus 8 keledlqerlrklrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456788888887776654
No 57
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=25.48 E-value=50 Score=24.79 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhhhCchhhHHhhhhccCCCCc------ccCCChhhhhcCCCCCCchHHHHH
Q 025019 192 DVYYARTRGMLDKLGLQNYTKNFKRGLLTDST------LPLLTDSALRDVRIPPGPRLLILD 247 (259)
Q Consensus 192 d~~y~r~~~~l~~lg~~~y~~~~~~~~~~~~~------l~~~~~~~l~~~~ip~gpr~~il~ 247 (259)
+.+=..+-.||..-|+++|.+-|+.+++--+. =+.|++..|+.+ =-||.+|+
T Consensus 18 E~eA~eAC~WLRaaGFPQYAqlyed~qFPIdi~~VkkDH~FLd~d~l~sL----~RRl~tLN 75 (81)
T 2h80_A 18 EIEAKEACDWLRAAGFPQYAQLYEDSQFPINIVAVKNDHDFLEKDLVEPL----CRRLNTLN 75 (81)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTTTTCCCSCHHHHHTSCCSSCSTTHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHhhcccccccHHHhccCCCccCHHHHHHH----HHHHHHHH
Confidence 44555678899999999999999999765433 367777777654 24566665
No 58
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=25.43 E-value=47 Score=30.97 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=21.8
Q ss_pred cCCChhhhh-cCCCCCCchH-HHHHhhhh
Q 025019 225 PLLTDSALR-DVRIPPGPRL-LILDHIQR 251 (259)
Q Consensus 225 ~~~~~~~l~-~~~ip~gpr~-~il~~~~~ 251 (259)
|.+|=.+|. .++|||||.+ .||+++..
T Consensus 347 ~~i~G~dL~~~lG~~pGp~iG~~L~~l~~ 375 (404)
T 1miw_A 347 LAVNGKDVIEWVGKPAGPWVKEALDAIWR 375 (404)
T ss_dssp CSSCHHHHHHHHTCCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 478899998 5999999998 56776654
No 59
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=22.67 E-value=28 Score=24.21 Aligned_cols=12 Identities=50% Similarity=0.905 Sum_probs=9.9
Q ss_pred hhhhcCCCCCCc
Q 025019 230 SALRDVRIPPGP 241 (259)
Q Consensus 230 ~~l~~~~ip~gp 241 (259)
+.|+..+|+|||
T Consensus 13 ~~L~~~G~~~GP 24 (53)
T 1jei_A 13 TLLRRYNIPHGP 24 (53)
T ss_dssp HHHSSSCCSCCC
T ss_pred HHHHHhCCCCCC
Confidence 356689999999
No 60
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=21.39 E-value=1e+02 Score=18.64 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 025019 49 VTATTAINGAAIGAFLGVMT 68 (259)
Q Consensus 49 kt~~g~v~Gg~lG~~~G~~~ 68 (259)
..+.|++.|+.-|+++|..+
T Consensus 6 a~AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 6 AAAAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHh
Confidence 45566666666666666543
Done!