Citrus Sinensis ID: 025022

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLAY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHccccEEEEEEEcccccccHHHHHcccccEEEEEccccccccccccEEEEcccccccHHHHcccHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccHHHHHHHHHcccccEEEcccccccccEEHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHccccccccccccccccccccccccHHcccEEEEEccccHHHHHHHHHHHHcccccEEEEEcccEHHHHHHHHHHccccEEEEEEcccccEEEEHHHEHHcccccccccccccccHEHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccEHHHHHHHHHccccEEEEccccccccEEEHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
maqeisngnhnsaskppptpsplrfskFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDnyftgskdnlrkwighprfelirhdvtepllieVDQIyhlacpaspifykynpvktiKTNVIGTLNMLGLAKRVGARILLTstsevygdplvhpqdesywgnvnpigvrscYDEGKRVAETLMFDYHRQHGIEIRIARIFntygprmniddgrVVSNFIAQairgepltvqapgtqtrsfcyvsdmvckscflay
Flexible Loop (DISEMBL)
maqeisngnhnsaskppptpSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDnyftgskdnlrkWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSevygdplvhpqdesywgnvNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIrgepltvqapgtqTRSFCYVSDMVCKSCFLAY
Low Complexity Region (SEG)
MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLAY
Disordered region (IsUnstruct)
************************FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA*
Disordered Region (DISOPRED)
******************************SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLAY
Disordered Region (DISEMBL)
*******************PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLAY
Disordered Region (DISPRO)
*****************PTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLAY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q8NBZ7	420	UDP-glucuronic acid decar	yes	no	0.837	0.516	0.729	3e-93
Q5R885	420	UDP-glucuronic acid decar	yes	no	0.837	0.516	0.729	3e-93
Q91XL3	420	UDP-glucuronic acid decar	yes	no	0.837	0.516	0.729	3e-93
Q5PQX0	420	UDP-glucuronic acid decar	yes	no	0.837	0.516	0.729	5e-93
Q6DF08	421	UDP-glucuronic acid decar	yes	no	0.938	0.577	0.652	2e-92
Q6GMI9	418	UDP-glucuronic acid decar	yes	no	0.837	0.519	0.720	2e-91
Q57664	305	Putative UDP-glucose 4-ep	yes	no	0.818	0.695	0.364	6e-27
Q9ZAE8	320	dTDP-glucose 4,6-dehydrat	yes	no	0.837	0.678	0.320	3e-21
C6DAW5	672	Bifunctional polymyxin re	yes	no	0.853	0.328	0.282	1e-19
Q6D2F1	673	Bifunctional polymyxin re	yes	no	0.853	0.328	0.282	1e-19

>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1

 Score =  341 bits (875), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 159/218 (72%), Positives = 185/218 (84%), Gaps = 1/218 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
           P VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268

Query: 214 DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           +DGRVVSNFI QA++GEPLTV   G+QTR+F YVSD+V
Sbjct: 269 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 306

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.
Homo sapiens (taxid: 9606)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5

>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1

 Score =  341 bits (874), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 159/218 (72%), Positives = 185/218 (84%), Gaps = 1/218 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
           P VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268

Query: 214 DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           +DGRVVSNFI QA++GEPLTV   G+QTR+F YVSD+V
Sbjct: 269 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 306

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1

 Score =  341 bits (874), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 159/218 (72%), Positives = 185/218 (84%), Gaps = 1/218 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
           P VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268

Query: 214 DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           +DGRVVSNFI QA++GEPLTV   G+QTR+F YVSD+V
Sbjct: 269 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 306

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1

 Score =  340 bits (873), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 159/218 (72%), Positives = 185/218 (84%), Gaps = 1/218 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
           P VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM++
Sbjct: 209 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 268

Query: 214 DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           +DGRVVSNFI QA++GEPLTV   G+QTR+F YVSD+V
Sbjct: 269 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 306

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1

 Score =  338 bits (867), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 165/253 (65%), Positives = 195/253 (77%), Gaps = 10/253 (3%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKN 58
           + ++I N   +   K PP        KF   +   RIL+TGGAGF+GSHL DKLM  + +
Sbjct: 63  LREKIQNLERSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLMM-DGH 114

Query: 59  EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
           EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+
Sbjct: 115 EVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPI 174

Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDE 178
           KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDE
Sbjct: 175 KTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEEYWGHVNPIGPRACYDE 234

Query: 179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG 238
           GKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM+++DGRVVSNFI QA++GE LTV   G
Sbjct: 235 GKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEQLTVYGSG 294

Query: 239 TQTRSFCYVSDMV 251
            QTR+F YVSD+V
Sbjct: 295 EQTRAFQYVSDLV 307

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Xenopus tropicalis (taxid: 8364)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2

 Score =  335 bits (859), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 157/218 (72%), Positives = 184/218 (84%), Gaps = 1/218 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 88  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 146

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 147 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 206

Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
           P VHPQ+E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+G RM++
Sbjct: 207 PEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHM 266

Query: 214 DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           +DGRVVSNFI QA++GE LTV   G+QTR+F YVSD+V
Sbjct: 267 NDGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLV 304

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). Essential during embryogenesis for craniofacial development.

Danio rerio (taxid: 7955)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 126/233 (54%), Gaps = 21/233 (9%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTGGAGFIGSH+VDKL+EN   +VI++DN  TG+K+N+     +P+ E +  D+ +  
Sbjct: 2   ILVTGGAGFIGSHIVDKLIENNY-DVIILDNLTTGNKNNI-----NPKAEFVNADIRDKD 55

Query: 95  LIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTS 146
           L E      V+ + H A   +      NPV     NV+GT+N+L + ++  +   +  +S
Sbjct: 56  LDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASS 115

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
              VYG+P   P DE++     PI   S Y   K V E  +  Y+R +GIE  I R  N 
Sbjct: 116 GGAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNV 170

Query: 207 YGPRMN-IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA 258
           YG R +   +  V+S FI + ++ +   +   G QTR F YV D V K+  +A
Sbjct: 171 YGERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGD-VAKANLMA 222

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9ZAE8|RMLB_ACTS5 dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) GN=acbB PE=3 SV=2

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 114/240 (47%), Gaps = 23/240 (9%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENE------KNEVIVVDNY-FTGSKDNLRKWIGHPRFEL 85
           M+ILVTGGAGFIGSH V  L+  +        +V VVD   + G+  NL +    PRF  
Sbjct: 1   MKILVTGGAGFIGSHFVTSLISGDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFSF 60

Query: 86  IRHDVTEPLLIEV-----DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--V 138
           +R D+ +  LIE      D + H A               + +N++GT  +L  A R  +
Sbjct: 61  VRGDICDEGLIEGLMARHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAALRHHI 120

Query: 139 GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
           G R L  ST EVYG       D   W   +P+   S Y   K  ++ L   YH+ HG+++
Sbjct: 121 G-RFLHVSTDEVYGS-----IDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDV 174

Query: 199 RIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA 258
            + R  N YGPR   +  +++  F+ + + G  + V   G   R + +VSD  C+   LA
Sbjct: 175 VVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIRDWLHVSDH-CRGLALA 231

Probably involved in the biosynthesis of the acarviose moiety of the alpha-glucosidase inhibitor acarbose. Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction.

Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) (taxid: 134676)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 4

EC: 6

>sp|C6DAW5|ARNA_PECCP Bifunctional polymyxin resistance protein ArnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 118/241 (48%), Gaps = 20/241 (8%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
           S+  +   R+L+ G  GFIG+HL ++L+ +++ E+  +D     S D + +++G PRF  
Sbjct: 315 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHF 370

Query: 86  IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    R  
Sbjct: 371 VEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYN 430

Query: 140 ARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGI 196
            RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  ++G+
Sbjct: 431 KRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKNGL 489

Query: 197 EIRIARIFNTYGPRMNIDDG------RVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDM 250
              + R FN  GPR++  D       R ++  I   + G P+ +   G Q R F  + D 
Sbjct: 490 RFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDG 549

Query: 251 V 251
           +
Sbjct: 550 I 550

Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: 5

>sp|Q6D2F1|ARNA_ERWCT Bifunctional polymyxin resistance protein ArnA OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=arnA PE=3 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 118/241 (48%), Gaps = 20/241 (8%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
           S+  +   R+L+ G  GFIG+HL ++L+ +++ E+  +D     S D + +++G PRF  
Sbjct: 316 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHF 371

Query: 86  IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    R  
Sbjct: 372 VEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYN 431

Query: 140 ARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGI 196
            RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  ++G+
Sbjct: 432 KRIVFPSTSEVYGMCDDKEFDEDTSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKNGL 490

Query: 197 EIRIARIFNTYGPRMNIDDG------RVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDM 250
              + R FN  GPR++  D       R ++  I   + G P+ +   G Q R F  + D 
Sbjct: 491 RFTLFRPFNWMGPRLDTLDAARIGSSRAITQLILNLVEGSPIKLVDGGAQKRCFTDIHDG 550

Query: 251 V 251
           +
Sbjct: 551 I 551

Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
255575062	346	dtdp-glucose 4-6-dehydratase, putative [	0.969	0.725	0.968	1e-143
224100953	346	predicted protein [Populus trichocarpa]	0.969	0.725	0.960	1e-142
225449563	345	PREDICTED: UDP-glucuronic acid decarboxy	0.969	0.727	0.960	1e-142
224109544	346	predicted protein [Populus trichocarpa]	0.969	0.725	0.944	1e-141
192338748	346	UDP-D-glucuronate carboxy-lyase [Eucalyp	0.969	0.725	0.932	1e-139
356550259	348	PREDICTED: UDP-glucuronic acid decarboxy	0.969	0.721	0.928	1e-136
358248590	348	uncharacterized protein LOC100790835 [Gl	0.969	0.721	0.928	1e-136
449459910	344	PREDICTED: UDP-glucuronic acid decarboxy	0.969	0.729	0.920	1e-136
388495536	346	unknown [Lotus japonicus]	0.969	0.725	0.916	1e-135
60932273	343	UDP-glucuronic acid decarboxylase 3 [Pop	0.949	0.717	0.939	1e-135

>gi|255575062|ref|XP_002528436.1| dtdp-glucose 4-6-dehydratase, putative [Ricinus communis] gi|223532112|gb|EEF33919.1| dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/251 (96%), Positives = 250/251 (99%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA+E+SNG+H+SASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV
Sbjct: 1   MAKEVSNGDHSSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IVVDNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVVDNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ+ESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQEESYWGNVNPIGVRSCYDEGK 180

Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 240
           RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+R EPLTVQAPGTQ
Sbjct: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAVRNEPLTVQAPGTQ 240

Query: 241 TRSFCYVSDMV 251
           TRSFCYVSDMV
Sbjct: 241 TRSFCYVSDMV 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100953|ref|XP_002312082.1| predicted protein [Populus trichocarpa] gi|118487220|gb|ABK95438.1| unknown [Populus trichocarpa] gi|222851902|gb|EEE89449.1| predicted protein [Populus trichocarpa]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/251 (96%), Positives = 247/251 (98%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA+E SNGNHNSA+K PPTPSPLRFSK+FQSNMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MAKEASNGNHNSATKAPPTPSPLRFSKYFQSNMRILVTGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180

Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 240
           RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR EPLTVQAPGTQ
Sbjct: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRNEPLTVQAPGTQ 240

Query: 241 TRSFCYVSDMV 251
           TRSFCYVSDMV
Sbjct: 241 TRSFCYVSDMV 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449563|ref|XP_002283871.1| PREDICTED: UDP-glucuronic acid decarboxylase 1 [Vitis vinifera] gi|147766093|emb|CAN65700.1| hypothetical protein VITISV_010481 [Vitis vinifera] gi|296086255|emb|CBI31696.3| unnamed protein product [Vitis vinifera]

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/251 (96%), Positives = 247/251 (98%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA+E+SNG+HNS +KPPPTPSPLR SKFFQSNMRILVTGGAGFIGSHLVDKLM+NEKNEV
Sbjct: 1   MAKEVSNGDHNSVTKPPPTPSPLRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ+ESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQEESYWGNVNPIGVRSCYDEGK 180

Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 240
           RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGE LTVQAPGTQ
Sbjct: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGESLTVQAPGTQ 240

Query: 241 TRSFCYVSDMV 251
           TRSFCYVSDMV
Sbjct: 241 TRSFCYVSDMV 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109544|ref|XP_002315231.1| predicted protein [Populus trichocarpa] gi|118483816|gb|ABK93800.1| unknown [Populus trichocarpa] gi|118485318|gb|ABK94518.1| unknown [Populus trichocarpa] gi|222864271|gb|EEF01402.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 237/251 (94%), Positives = 247/251 (98%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           M++E SNG+HNSA+K PPTPSPLRFSKFFQSNMRIL+TGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MSKEASNGDHNSAAKAPPTPSPLRFSKFFQSNMRILITGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ+ESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQNESYWGNVNPIGVRSCYDEGK 180

Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 240
           RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR EPLTVQAPGTQ
Sbjct: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRNEPLTVQAPGTQ 240

Query: 241 TRSFCYVSDMV 251
           TRSFCYVSDMV
Sbjct: 241 TRSFCYVSDMV 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192338748|gb|ACF04279.1| UDP-D-glucuronate carboxy-lyase [Eucalyptus grandis]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/251 (93%), Positives = 246/251 (98%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA++ SNG ++S +KPPPTPSPLRFSKFFQ NMRILVTGGAGFIGSHLVDKLMENEKNEV
Sbjct: 1   MAKQASNGENHSVAKPPPTPSPLRFSKFFQPNMRILVTGGAGFIGSHLVDKLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DN+FTG+K+NL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNFFTGTKENLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180

Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 240
           RVAETLMFDYHRQHGIEIR+ARIFNTYGPRMNIDDGRVVSNFIAQA+RGEPLTVQAPGTQ
Sbjct: 181 RVAETLMFDYHRQHGIEIRVARIFNTYGPRMNIDDGRVVSNFIAQAVRGEPLTVQAPGTQ 240

Query: 241 TRSFCYVSDMV 251
           TRSFCYVSDMV
Sbjct: 241 TRSFCYVSDMV 251

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550259|ref|XP_003543505.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/253 (92%), Positives = 242/253 (95%), Gaps = 2/253 (0%)

Query: 1   MAQEISNGN--HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKN 58
           MA + SNGN  H + +K PP PSPLRFSKFFQSNMRILVTGGAGFIGSHLVD+LMENEKN
Sbjct: 1   MATDSSNGNGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKN 60

Query: 59  EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
           EVIV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV
Sbjct: 61  EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 120

Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDE 178
           KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIGVRSCYDE
Sbjct: 121 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDE 180

Query: 179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG 238
           GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+RGEPLTVQ PG
Sbjct: 181 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQCPG 240

Query: 239 TQTRSFCYVSDMV 251
           TQTRSFCYVSD+V
Sbjct: 241 TQTRSFCYVSDLV 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248590|ref|NP_001239907.1| uncharacterized protein LOC100790835 [Glycine max] gi|255641885|gb|ACU21211.1| unknown [Glycine max]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/253 (92%), Positives = 242/253 (95%), Gaps = 2/253 (0%)

Query: 1   MAQEISNGN--HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKN 58
           MA + SNGN  H + +K PP PSPLRFSKFFQSNMRILVTGGAGFIGSHLVD+LMENEKN
Sbjct: 1   MATDSSNGNGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKN 60

Query: 59  EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
           EVIV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV
Sbjct: 61  EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 120

Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDE 178
           KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIGVRSCYDE
Sbjct: 121 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDE 180

Query: 179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG 238
           GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+RGEPLTVQ PG
Sbjct: 181 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQCPG 240

Query: 239 TQTRSFCYVSDMV 251
           TQTRSFCYVSD+V
Sbjct: 241 TQTRSFCYVSDLV 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459910|ref|XP_004147689.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus] gi|449523904|ref|XP_004168963.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/251 (92%), Positives = 242/251 (96%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA++ SNG+  +++K PP PSPLR +KFFQ+NMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MAKQSSNGDFYTSTKAPPPPSPLRSAKFFQANMRILVTGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
            KTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK
Sbjct: 121 TKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180

Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 240
           RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNF+AQAIR EPLTVQAPGTQ
Sbjct: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFLAQAIRSEPLTVQAPGTQ 240

Query: 241 TRSFCYVSDMV 251
           TRSFCYVSDMV
Sbjct: 241 TRSFCYVSDMV 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495536|gb|AFK35834.1| unknown [Lotus japonicus]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 230/251 (91%), Positives = 239/251 (95%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA + SNG+H  A K PP PSPLRFSKFFQ+NMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MATDSSNGDHQKAGKQPPLPSPLRFSKFFQANMRILVTGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DN+FTGSKDNL+KWIGHPRFELIRHDVTE LL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIGVRSCYDEGK
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRSCYDEGK 180

Query: 181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 240
           RVAETLMFDYH QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQ PGT+
Sbjct: 181 RVAETLMFDYHTQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTR 240

Query: 241 TRSFCYVSDMV 251
           TRSFCYVSDMV
Sbjct: 241 TRSFCYVSDMV 251

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60932273|gb|AAX37336.1| UDP-glucuronic acid decarboxylase 3 [Populus tomentosa]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/246 (93%), Positives = 236/246 (95%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
           SNG+H +  KPPP+PSPLR SKF QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV DN
Sbjct: 3   SNGDHQTTVKPPPSPSPLRNSKFSQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62

Query: 66  YFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
           YFTGSKDNLRKWIG PRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKTIKTNV
Sbjct: 63  YFTGSKDNLRKWIGQPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTNV 122

Query: 126 IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185
           IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIGVRSCYDEGKRVAET
Sbjct: 123 IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAET 182

Query: 186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC 245
           LMFDYHRQHGIE RIARIFNTYGPRMNIDDGRVVSNFIAQA+RGEPLTVQ PGTQTRSFC
Sbjct: 183 LMFDYHRQHGIEFRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFC 242

Query: 246 YVSDMV 251
           YVSDMV
Sbjct: 243 YVSDMV 248

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2053275	343	UXS6 "UDP-XYL synthase 6" [Ara	0.961	0.725	0.920	4.9e-124
TAIR|locus:2078206	341	UXS5 "UDP-XYL synthase 5" [Ara	0.953	0.724	0.910	1.5e-122
TAIR|locus:2168539	357	UXS3 "UDP-glucuronic acid deca	0.926	0.672	0.920	7.4e-121
TAIR|locus:2081675	445	AUD1 "AT3G62830" [Arabidopsis	0.853	0.496	0.747	3.6e-89
UNIPROTKB|E1BV28	421	UXS1 "Uncharacterized protein"	0.880	0.541	0.708	2.9e-87
TIGR_CMR|GSU_1815	311	GSU_1815 "NAD-dependent epimer	0.841	0.700	0.721	1.6e-86
UNIPROTKB|E1BMI4	420	UXS1 "Uncharacterized protein"	0.880	0.542	0.704	6.9e-86
UNIPROTKB|F1PU61	414	UXS1 "Uncharacterized protein"	0.880	0.550	0.7	6.9e-86
UNIPROTKB|B3KV61	363	UXS1 "UDP-glucuronate decarbox	0.880	0.628	0.7	6.9e-86
UNIPROTKB|Q8NBZ7	420	UXS1 "UDP-glucuronic acid deca	0.880	0.542	0.7	6.9e-86

TAIR|locus:2053275 UXS6 "UDP-XYL synthase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
 Identities = 231/251 (92%), Positives = 237/251 (94%)

Query:     1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
             MA   SNG   + +KPPP PSPLR SKFFQSNMRILVTGGAGFIGSHLVDKLM+NEKNEV
Sbjct:     1 MASNSSNGT--TTTKPPPMPSPLRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEV 58

Query:    61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
             IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPL +EVDQIYHLACPASPIFYKYNPVKT
Sbjct:    59 IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLFVEVDQIYHLACPASPIFYKYNPVKT 118

Query:   121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK 180
             IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIGVRSCYDEGK
Sbjct:   119 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQTESYWGNVNPIGVRSCYDEGK 178

Query:   181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ 240
             RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+RGE LTVQ PGTQ
Sbjct:   179 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEALTVQKPGTQ 238

Query:   241 TRSFCYVSDMV 251
             TRSFCYVSDMV
Sbjct:   239 TRSFCYVSDMV 249

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2078206 UXS5 "UDP-XYL synthase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
 Identities = 225/247 (91%), Positives = 237/247 (95%)

Query:     5 ISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64
             +++ +  ++ KPPP+PSPLR SKF QSNMRIL++GGAGFIGSHLVDKLMENEKNEVIV D
Sbjct:     1 MASSDKQTSPKPPPSPSPLRNSKFCQSNMRILISGGAGFIGSHLVDKLMENEKNEVIVAD 60

Query:    65 NYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 124
             NYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN
Sbjct:    61 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 120

Query:   125 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184
             VIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIGVRSCYDEGKRVAE
Sbjct:   121 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAE 180

Query:   185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF 244
             TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+RGE LTVQ PGTQTRSF
Sbjct:   181 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSF 240

Query:   245 CYVSDMV 251
             CYVSDMV
Sbjct:   241 CYVSDMV 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0042732 "D-xylose metabolic process" evidence=RCA;TAS

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2168539 UXS3 "UDP-glucuronic acid decarboxylase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
 Identities = 221/240 (92%), Positives = 232/240 (96%)

Query:    12 SASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK 71
             + +KPPP+PSPLR SKF Q NMRIL++GGAGFIGSHLVDKLMENEKNEV+V DNYFTGSK
Sbjct:    24 NTTKPPPSPSPLRNSKFCQPNMRILISGGAGFIGSHLVDKLMENEKNEVVVADNYFTGSK 83

Query:    72 DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 131
             +NL+KWIGHPRFELIRHDVTEPLLIEVD+IYHLACPASPIFYKYNPVKTIKTNVIGTLNM
Sbjct:    84 ENLKKWIGHPRFELIRHDVTEPLLIEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 143

Query:   132 LGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYH 191
             LGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIGVRSCYDEGKRVAETLMFDYH
Sbjct:   144 LGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYH 203

Query:   192 RQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             RQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA+RGE LTVQ PGTQTRSFCYVSDMV
Sbjct:   204 RQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEALTVQKPGTQTRSFCYVSDMV 263

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042732 "D-xylose metabolic process" evidence=RCA;IDA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IDA

TAIR|locus:2081675 AUD1 "AT3G62830" [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 166/222 (74%), Positives = 190/222 (85%)

Query:    30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
             +  +R++VTGGAGF+GSHLVD+LM    + VIVVDN+FTG K+N+     +P FE+IRHD
Sbjct:   116 RKGLRVVVTGGAGFVGSHLVDRLMARG-DTVIVVDNFFTGRKENVMHHFSNPNFEMIRHD 174

Query:    90 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
             V EP+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct:   175 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 234

Query:   150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209
             VYGDPL HPQ E+YWGNVNPIGVRSCYDEGKR AETL  DYHR   +E+RIARIFNTYGP
Sbjct:   235 VYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGP 294

Query:   210 RMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             RM IDDGRVVSNF+AQA+R EPLTV   G QTRSF +VSD+V
Sbjct:   295 RMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 336

GO:0003824 "catalytic activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=ISS

GO:0019305 "dTDP-rhamnose biosynthetic process" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0042732 "D-xylose metabolic process" evidence=IDA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|E1BV28 UXS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 163/230 (70%), Positives = 192/230 (83%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    80 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 137

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   138 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 197

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
             +LL STSEVYGDP VHPQ+E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+A
Sbjct:   198 LLLASTSEVYGDPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 257

Query:   202 RIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             RIFNT+GPRM+++DGRVVSNFI QA++GEPLTV  PGTQTR+F YVSD+V
Sbjct:   258 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGPGTQTRAFQYVSDLV 307

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TIGR_CMR|GSU_1815 GSU_1815 "NAD-dependent epimerase/dehydratase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 158/219 (72%), Positives = 192/219 (87%)

Query:    33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
             MRILVTGGAGFIGSHL ++L+E + ++V+ +DN+FTGSK N+ + +   RFE+IRHD+ E
Sbjct:     1 MRILVTGGAGFIGSHLCERLLE-QGHDVLCLDNFFTGSKRNIDRLMDFHRFEVIRHDIIE 59

Query:    93 PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
             P+L+EVD+IY+LACPASP+ Y+YNPVKTIKT+V+GT+NMLGLAKRV ARIL  STSEVYG
Sbjct:    60 PILLEVDRIYNLACPASPVHYQYNPVKTIKTSVMGTINMLGLAKRVRARILQASTSEVYG 119

Query:   153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212
             DP +HPQ ESYWGNVNPIG+RSCYDEGKRVAETL+ DYHRQ+G++IRIARIFNTYGPRM 
Sbjct:   120 DPTIHPQPESYWGNVNPIGIRSCYDEGKRVAETLLMDYHRQNGVDIRIARIFNTYGPRMA 179

Query:   213 IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
               DGRVVSNF+ QA+RGE LTV   G+QTRSFCYV D++
Sbjct:   180 EHDGRVVSNFVVQALRGEDLTVYGDGSQTRSFCYVDDLL 218

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0016829 "lyase activity" evidence=ISS

GO:0016857 "racemase and epimerase activity, acting on carbohydrates and derivatives" evidence=ISS

UNIPROTKB|E1BMI4 UXS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 162/230 (70%), Positives = 190/230 (82%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RILVTGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    79 PVKFLSE-KDRKRILVTGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 136

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   137 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 196

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
             +LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+A
Sbjct:   197 LLLASTSEVYGDPEVHPQTEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256

Query:   202 RIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             RIFNT+GPRM+++DGRVVSNFI QA++GEPLTV   G+QTR+F YVSD+V
Sbjct:   257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 306

GO:0050662 "coenzyme binding" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1PU61 UXS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 161/230 (70%), Positives = 190/230 (82%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    73 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 130

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   131 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 190

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
             +LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+A
Sbjct:   191 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 250

Query:   202 RIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             RIFNT+GPRM+++DGRVVSNFI QA++GEPLTV   G+QTR+F YVSD+V
Sbjct:   251 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 300

GO:0005739 "mitochondrion" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|B3KV61 UXS1 "UDP-glucuronate decarboxylase 1, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 161/230 (70%), Positives = 190/230 (82%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    22 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 79

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:    80 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 139

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
             +LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+A
Sbjct:   140 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 199

Query:   202 RIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             RIFNT+GPRM+++DGRVVSNFI QA++GEPLTV   G+QTR+F YVSD+V
Sbjct:   200 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 249

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q8NBZ7 UXS1 "UDP-glucuronic acid decarboxylase 1" [Homo sapiens (taxid:9606)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 161/230 (70%), Positives = 190/230 (82%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    79 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 136

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   137 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 196

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
             +LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+A
Sbjct:   197 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 256

Query:   202 RIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             RIFNT+GPRM+++DGRVVSNFI QA++GEPLTV   G+QTR+F YVSD+V
Sbjct:   257 RIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 306

GO:0000166 "nucleotide binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033320 "UDP-D-xylose biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R885	UXS1_PONAB	4, ., 1, ., 1, ., 3, 5	0.7293	0.8378	0.5166	yes	no
Q8NBZ7	UXS1_HUMAN	4, ., 1, ., 1, ., 3, 5	0.7293	0.8378	0.5166	yes	no
Q6GMI9	UXS1_DANRE	4, ., 1, ., 1, ., 3, 5	0.7201	0.8378	0.5191	yes	no
Q5PQX0	UXS1_RAT	4, ., 1, ., 1, ., 3, 5	0.7293	0.8378	0.5166	yes	no
Q91XL3	UXS1_MOUSE	4, ., 1, ., 1, ., 3, 5	0.7293	0.8378	0.5166	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
cd05230	305	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase	1e-167
PLN02206	442	PLN02206, PLN02206, UDP-glucuronate decarboxylase	1e-135
PLN02166	436	PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase	1e-132
cd05256	304	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e	2e-60
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	2e-56
cd08946	200	cd08946, SDR_e, extended (e) SDRs	2e-52
cd05257	316	cd05257, Arna_like_SDR_e, Arna decarboxylase_like,	3e-50
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	2e-48
cd05234	305	cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase,	2e-44
cd05246	315	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra	9e-40
cd05273	328	cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-	3e-32
cd05258	337	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e	3e-31
cd05264	300	cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase	9e-31
TIGR04180	297	TIGR04180, EDH_00030, NAD dependent epimerase/dehy	1e-30
COG1088	340	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel	2e-30
TIGR01181	317	TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd	2e-28
cd05260	316	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase	4e-26
PLN02427	386	PLN02427, PLN02427, UDP-apiose/xylose synthase	2e-25
cd05253	332	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera	7e-25
cd05247	323	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase,	2e-24
cd05248	317	cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto	9e-24
TIGR01179	328	TIGR01179, galE, UDP-glucose-4-epimerase GalE	1e-23
COG1087	329	COG1087, GalE, UDP-glucose 4-epimerase [Cell envel	2e-23
PRK11908	347	PRK11908, PRK11908, NAD-dependent epimerase/dehydr	1e-22
PRK10217	355	PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase;	5e-20
PLN02260	668	PLN02260, PLN02260, probable rhamnose biosynthetic	2e-19
cd05237	287	cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l	2e-19
PRK10084	352	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase;	1e-17
COG1086	588	COG1086, COG1086, Predicted nucleoside-diphosphate	4e-17
TIGR02197	314	TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep	6e-17
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	7e-17
cd08957	307	cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic	6e-16
PRK15181	348	PRK15181, PRK15181, Vi polysaccharide biosynthesis	6e-16
pfam02719	280	pfam02719, Polysacc_synt_2, Polysaccharide biosynt	2e-15
PRK08125	660	PRK08125, PRK08125, bifunctional UDP-glucuronic ac	3e-15
cd05239	300	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte	9e-15
PLN02695	370	PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase	1e-13
cd05241	331	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d	7e-13
cd05252	336	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata	2e-12
cd05261	248	cd05261, CAPF_like_SDR_e, capsular polysaccharide	3e-12
cd05238	305	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n	4e-12
COG1089	345	COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve	7e-12
PRK10675	338	PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro	1e-11
cd05255	382	cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth	2e-11
pfam07993	245	pfam07993, NAD_binding_4, Male sterility protein	2e-11
pfam01073	280	pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr	3e-11
cd05232	303	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase,	3e-11
PLN02240	352	PLN02240, PLN02240, UDP-glucose 4-epimerase	4e-11
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	1e-10
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	7e-10
cd09813	335	cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD	8e-10
COG1091	281	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C	4e-09
cd05240	306	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase	4e-09
cd09811	354	cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD	5e-09
cd08958	293	cd08958, FR_SDR_e, flavonoid reductase (FR), exten	7e-09
cd05227	301	cd05227, AR_SDR_e, aldehyde reductase, extended (e	8e-09
TIGR01214	287	TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase	3e-08
cd05235	290	cd05235, SDR_e1, extended (e) SDRs, subgroup 1	5e-08
cd05265	250	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1	5e-08
TIGR02622	349	TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra	1e-07
TIGR04130	337	TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd	1e-07
cd05193	295	cd05193, AR_like_SDR_e, aldehyde reductase, flavon	1e-07
cd05229	302	cd05229, SDR_a3, atypical (a) SDRs, subgroup 3	2e-07
cd05272	308	cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext	4e-07
TIGR03589	324	TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd	7e-07
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	2e-06
TIGR01472	343	TIGR01472, gmd, GDP-mannose 4,6-dehydratase	2e-06
PRK11150	308	PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi	3e-06
cd05254	280	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4	7e-06
COG3320	382	COG3320, COG3320, Putative dehydrogenase domain of	1e-05
cd05236	320	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F	1e-05
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	3e-05
TIGR01746	367	TIGR01746, Thioester-redct, thioester reductase do	5e-05
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	6e-05
cd02266	186	cd02266, SDR, Short-chain dehydrogenases/reductase	7e-05
PLN02214	342	PLN02214, PLN02214, cinnamoyl-CoA reductase	2e-04
pfam04321	284	pfam04321, RmlD_sub_bind, RmlD substrate binding d	4e-04
cd05245	293	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	4e-04
PLN02986	322	PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase	5e-04
PLN02725	306	PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-	5e-04
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	0.002

>gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

 Score =  464 bits (1196), Expect = e-167
 Identities = 168/219 (76%), Positives = 191/219 (87%), Gaps = 1/219 (0%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            RIL+TGGAGF+GSHL D+L+  + +EVI VDN+FTG K N+   IGHP FE IRHDVTE
Sbjct: 1   KRILITGGAGFLGSHLCDRLL-EDGHEVICVDNFFTGRKRNIEHLIGHPNFEFIRHDVTE 59

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
           PL +EVDQIYHLACPASP+ Y+YNP+KT+KTNV+GTLNMLGLAKRVGAR+LL STSEVYG
Sbjct: 60  PLYLEVDQIYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGARVLLASTSEVYG 119

Query: 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212
           DP VHPQ ESYWGNVNPIG RSCYDEGKRVAETL   YHRQHG+++RIARIFNTYGPRM+
Sbjct: 120 DPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVRIARIFNTYGPRMH 179

Query: 213 IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            +DGRVVSNFI QA+RGEP+TV   GTQTRSF YVSD+V
Sbjct: 180 PNDGRVVSNFIVQALRGEPITVYGDGTQTRSFQYVSDLV 218

UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase

 Score =  388 bits (999), Expect = e-135
 Identities = 167/219 (76%), Positives = 189/219 (86%), Gaps = 1/219 (0%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           +R++VTGGAGF+GSHLVD+LM    + VIVVDN+FTG K+N+     +P FELIRHDV E
Sbjct: 120 LRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGRKENVMHHFSNPNFELIRHDVVE 178

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
           P+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSEVYG
Sbjct: 179 PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 238

Query: 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212
           DPL HPQ E+YWGNVNPIGVRSCYDEGKR AETL  DYHR   +E+RIARIFNTYGPRM 
Sbjct: 239 DPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMC 298

Query: 213 IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           IDDGRVVSNF+AQA+R EPLTV   G QTRSF +VSD+V
Sbjct: 299 IDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLV 337

Length = 442

>gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase

 Score =  379 bits (975), Expect = e-132
 Identities = 170/222 (76%), Positives = 192/222 (86%), Gaps = 1/222 (0%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +  +RI+VTGGAGF+GSHLVDKL+    +EVIV+DN+FTG K+NL    G+PRFELIRHD
Sbjct: 118 RKRLRIVVTGGAGFVGSHLVDKLI-GRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHD 176

Query: 90  VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
           V EP+L+EVDQIYHLACPASP+ YKYNPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 177 VVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSE 236

Query: 150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209
           VYGDPL HPQ E+YWGNVNPIG RSCYDEGKR AETL  DYHR  G+E+RIARIFNTYGP
Sbjct: 237 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGP 296

Query: 210 RMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           RM +DDGRVVSNF+AQ IR +P+TV   G QTRSF YVSD+V
Sbjct: 297 RMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLV 338

Length = 436

>gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs

 Score =  192 bits (490), Expect = 2e-60
 Identities = 93/228 (40%), Positives = 130/228 (57%), Gaps = 20/228 (8%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           R+LVTGGAGFIGSHLV++L+E   +EVIV+DN  TG K+NL +    P  + I  D+   
Sbjct: 1   RVLVTGGAGFIGSHLVERLLERG-HEVIVLDNLSTGKKENLPE--VKPNVKFIEGDIRDD 57

Query: 92  ---EPLLIEVDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
              E     VD ++H A  AS P   + +P+K  + NV+GTLN+L  A++ G  R +  S
Sbjct: 58  ELVEFAFEGVDYVFHQAAQASVPRSIE-DPIKDHEVNVLGTLNLLEAARKAGVKRFVYAS 116

Query: 147 TSEVYGDPLVHPQDESYWGN-VNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
           +S VYGDP   P+DE +  N ++P  V       K   E     + R +G+     R FN
Sbjct: 117 SSSVYGDPPYLPKDEDHPPNPLSPYAV------SKYAGELYCQVFARLYGLPTVSLRYFN 170

Query: 206 TYGPRMNIDDGR--VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            YGPR + + G   V+  FI +A++GEP T+   G QTR F YV D+V
Sbjct: 171 VYGPRQDPNGGYAAVIPIFIERALKGEPPTIYGDGEQTRDFTYVEDVV 218

This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score =  182 bits (464), Expect = 2e-56
 Identities = 86/225 (38%), Positives = 116/225 (51%), Gaps = 12/225 (5%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MRILVTGGAGFIGSHLV++L+    ++V  +D    G        +     +L   D+ +
Sbjct: 1   MRILVTGGAGFIGSHLVERLLA-AGHDVRGLDRLRDGLDPL-LSGVEFVVLDLTDRDLVD 58

Query: 93  PLLIEV-DQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVG-ARILLTST-S 148
            L   V D + HLA  +S       +P + +  NV GTLN+L  A+  G  R +  S+ S
Sbjct: 59  ELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVS 118

Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
            VYGDP   P DE   G   P    + Y   K  AE L+  Y R +G+ + I R FN YG
Sbjct: 119 VVYGDPPPLPIDEDL-GPPRP---LNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYG 174

Query: 209 PRMNID-DGRVVSNFIAQAIRGEPL-TVQAPGTQTRSFCYVSDMV 251
           P    D    VVS FI Q ++GEP+  +   G+QTR F YV D+ 
Sbjct: 175 PGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVA 219

Length = 314

>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs

 Score =  169 bits (429), Expect = 2e-52
 Identities = 77/218 (35%), Positives = 106/218 (48%), Gaps = 39/218 (17%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTGGAGFIGSHLV +L     +EV+V+D                              
Sbjct: 1   ILVTGGAGFIGSHLVRRL-LERGHEVVVIDRL---------------------------- 31

Query: 95  LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD 153
               D + HLA          NP +  +TNV+GTLN+L  A++ G  R +  S++ VYG 
Sbjct: 32  ----DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSASVYGS 87

Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
           P   P++E       P+   S Y   K  AE L+  Y   +G+ + I R+ N YGP    
Sbjct: 88  PEGLPEEEETP--PRPL---SPYGVSKLAAEHLLRSYGESYGLPVVILRLANVYGPGQRP 142

Query: 214 DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
               VV++FI +A+ G+PLTV   G QTR F +V D+V
Sbjct: 143 RLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVV 180

Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200

>gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs

 Score =  166 bits (423), Expect = 3e-50
 Identities = 82/235 (34%), Positives = 116/235 (49%), Gaps = 20/235 (8%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
            +LVTG  GFIGSHL ++L+  E +EV  +D Y + +   L     H RF  I  DV + 
Sbjct: 1   NVLVTGADGFIGSHLTERLLR-EGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDA 59

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTST 147
             +E      D ++HLA   +  +    P+  ++TNV GTLN+L  A  +   R++ TST
Sbjct: 60  SEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRVVHTST 119

Query: 148 SEVYGDPLVHPQDESYWGNVNPIGV----RSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
           SEVYG     P DE      +P+      RS Y   K+ A+ L + Y R  G+ + I R 
Sbjct: 120 SEVYGTAQDVPIDED-----HPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPVTIIRP 174

Query: 204 FNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA 258
           FNTYGPR       V+   I+Q   G+ L     G+ TR F +V D      F+ 
Sbjct: 175 FNTYGPRQ--SARAVIPTIISQRAIGQRLINLGDGSPTRDFNFVKDTAR--GFID 225

Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score =  159 bits (404), Expect = 2e-48
 Identities = 78/230 (33%), Positives = 107/230 (46%), Gaps = 29/230 (12%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTGG GFIGSHLV +L++        V       +      +   R      D+T+P 
Sbjct: 1   ILVTGGTGFIGSHLVRRLLQEG----YEVIVLGRRRRSES---LNTGRIRFHEGDLTDPD 53

Query: 95  LIE-------VDQIYHLA----CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RI 142
            +E        D + HLA      AS      +P   I+ NV+GTL +L  A+R G  R 
Sbjct: 54  ALERLLAEVQPDAVIHLAAQSGVGAS----FEDPADFIRANVLGTLRLLEAARRAGVKRF 109

Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
           +  S+SEVYGD    P  E       P+G  S Y   K  AE L+  Y R +G+   I R
Sbjct: 110 VFASSSEVYGDVADPPITEDT-----PLGPLSPYAAAKLAAERLVEAYARAYGLRAVILR 164

Query: 203 IFNTYGPR-MNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           +FN YGP   +     V+   I + + G+P+ +   GTQ R F YV D+ 
Sbjct: 165 LFNVYGPGNPDPFVTHVIPALIRRILEGKPILLLGDGTQRRDFLYVDDVA 214

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs

 Score =  151 bits (383), Expect = 2e-44
 Identities = 83/224 (37%), Positives = 114/224 (50%), Gaps = 15/224 (6%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RILVTGGAGFIGSHLVD+L+E E NEV+VVDN  +G ++N+     +  F  ++ D+ + 
Sbjct: 1   RILVTGGAGFIGSHLVDRLLE-EGNEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDT 59

Query: 94  L----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
                  + D ++HLA          +P   ++ NV+ T N+L   +  G  RI+  S+S
Sbjct: 60  ADKVAKKDGDTVFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFASSS 119

Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
            VYG+  V P  E Y     PI   S Y   K  AE L+  Y    G +  I R  N  G
Sbjct: 120 TVYGEAKVIPTPEDY--PPLPI---SVYGASKLAAEALISAYAHLFGFQAWIFRFANIVG 174

Query: 209 PRMNIDDGRVVSNFIAQAIRG-EPLTVQAPGTQTRSFCYVSDMV 251
           PR       V+ +FI +  R    L V   G Q +S+ YVSD V
Sbjct: 175 PRST---HGVIYDFINKLKRNPNELEVLGDGRQRKSYLYVSDCV 215

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score =  139 bits (353), Expect = 9e-40
 Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 26/234 (11%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDV 90
           M+ILVTGGAGFIGS+ V  L+    + ++I +D   + G+ +NL      PR+  ++ D+
Sbjct: 1   MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSSSPRYRFVKGDI 60

Query: 91  TEPLLI-------EVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
            +  L+       ++D + H A       S I    +P   I+TNV+GT  +L  A++ G
Sbjct: 61  CDAELVDRLFEEEKIDAVIHFAAESHVDRS-I---SDPEPFIRTNVLGTYTLLEAARKYG 116

Query: 140 A-RILLTSTSEVYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE 197
             R +  ST EVYGD        E+    + P    S Y   K  A+ L+  YHR +G+ 
Sbjct: 117 VKRFVHISTDEVYGDLLDDGEFTETS--PLAP---TSPYSASKAAADLLVRAYHRTYGLP 171

Query: 198 IRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           + I R  N YGP    +  +++  FI  A+ G+PL +   G   R + YV D  
Sbjct: 172 VVITRCSNNYGPYQFPE--KLIPLFILNALDGKPLPIYGDGLNVRDWLYVEDHA 223

This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315

>gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs

 Score =  120 bits (302), Expect = 3e-32
 Identities = 69/233 (29%), Positives = 93/233 (39%), Gaps = 22/233 (9%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           R LVTG  GFIGSHL ++L   E + V   D                   +L   +    
Sbjct: 2   RALVTGAGGFIGSHLAERLKA-EGHYVRGADWKSPEHMTQPTDDDEFHLVDLREMENCLK 60

Query: 94  LLIEVDQIYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY 151
               VD ++HLA     + Y + N    +  N +   NML  A+  G  R L  S++ VY
Sbjct: 61  ATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSACVY 120

Query: 152 GDPLVHPQDESYWGNVN--------PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
                 P+ +     V         P   +  Y   K   E L   Y+  +GIE RI R 
Sbjct: 121 ------PEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIETRIVRF 174

Query: 204 FNTYGPRMNIDDGR-----VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            N YGPR   D GR      +   +A A  G+   +   G QTRSF Y+ D V
Sbjct: 175 HNIYGPRGTWDGGREKAPAAMCRKVATAKDGDRFEIWGDGLQTRSFTYIDDCV 227

This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328

>gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs

 Score =  117 bits (296), Expect = 3e-31
 Identities = 74/251 (29%), Positives = 115/251 (45%), Gaps = 36/251 (14%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRKWIGHPRFELIRH 88
           MR+L+TGGAGFIGS+L    ++    EVI  DN       G+   L+          +  
Sbjct: 1   MRVLITGGAGFIGSNLARFFLKQG-WEVIGFDNLMRRGSFGNLAWLKANREDGGVRFVHG 59

Query: 89  DV-----TEPLLIEVDQIYHLAC-PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A 140
           D+      E L  ++D I H A  P+       +P    +TN +GTLN+L  A++    A
Sbjct: 60  DIRNRNDLEDLFEDIDLIIHTAAQPSVTTSAS-SPRLDFETNALGTLNVLEAARQHAPNA 118

Query: 141 RILLTSTSEVYGD-----PLVHPQDESYW----GNVNPIGV---------RSCYDEGKRV 182
             + TST++VYGD     PL   + E+ +       +P G+          S Y   K  
Sbjct: 119 PFIFTSTNKVYGDLPNYLPLE--ELETRYELAPEGWSPAGISESFPLDFSHSLYGASKGA 176

Query: 183 AETLMFDYHRQHGIEIRIARIFNTYGPR-MNIDDGRVVSNFIAQAIRGEPLTVQAPG-TQ 240
           A+  + +Y R  G++  + R     GPR    +D   V+ F+  A+ G+PLT+   G  Q
Sbjct: 177 ADQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLKCAVTGKPLTIFGYGGKQ 236

Query: 241 TRSFCYVSDMV 251
            R   + +D+V
Sbjct: 237 VRDVLHSADLV 247

CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337

>gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs

 Score =  115 bits (290), Expect = 9e-31
 Identities = 72/227 (31%), Positives = 102/227 (44%), Gaps = 22/227 (9%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELI------R 87
           R+L+ GG GFIGSHLVD L+E     V V D         L         + I      R
Sbjct: 1   RVLIVGGNGFIGSHLVDALLEEGPQ-VRVFDRSI--PPYELPLG----GVDYIKGDYENR 53

Query: 88  HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL--AKRVGARILLT 145
            D+    L+ +D + HLA   +P     NP+  I+TNV  T+ +L    A  +G  I  +
Sbjct: 54  ADLES-ALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFAS 112

Query: 146 STSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
           S   VYG P   P  ES      PI   S Y   K   E  +  Y   +G++  + RI N
Sbjct: 113 SGGTVYGVPEQLPISESD--PTLPI---SSYGISKLAIEKYLRLYQYLYGLDYTVLRISN 167

Query: 206 TYGPRMNIDDGR-VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            YGP    D  + V+   + + +RGEP+ +   G   R + Y+ D+V
Sbjct: 168 PYGPGQRPDGKQGVIPIALNKILRGEPIEIWGDGESIRDYIYIDDLV 214

This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family

 Score =  115 bits (290), Expect = 1e-30
 Identities = 78/228 (34%), Positives = 111/228 (48%), Gaps = 21/228 (9%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFT--GSKDNLRKWIGHPRFELIRHDVT 91
           +LVTG  GFIGSHLV+ L+         V+ N F   G  D     +   + E++  D+ 
Sbjct: 1   VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEV-KDKIEVVTGDIR 59

Query: 92  EPLLIE-----VDQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVG-ARILL 144
           +P  +       D ++HLA   + I Y Y  P   + TNV GTLN+L  A+ +G  +++ 
Sbjct: 60  DPDSVRKAMKGCDVVFHLAALIA-IPYSYIAPDSYVDTNVTGTLNVLQAARDLGVEKVVH 118

Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
           TSTSEVYG     P DE +     P+  +S Y   K  A+ L   ++R     + I R F
Sbjct: 119 TSTSEVYGTAQYVPIDEKH-----PLQGQSPYSASKIGADQLALSFYRSFNTPVTIIRPF 173

Query: 205 NTYGPRMNIDDGR-VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           NTYGPR +    R V+   I Q   G+        + TR F YV+D V
Sbjct: 174 NTYGPRQS---ARAVIPTIITQIASGKRRIKLGSLSPTRDFNYVTDTV 218

This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297

>gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

 Score =  115 bits (291), Expect = 2e-30
 Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 24/232 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVD--NYFTGSKDNLRKWIGHPRFELIRHD 89
           M+ILVTGGAGFIGS+ V  ++     + V+ +D   Y  G+ +NL      PR+  ++ D
Sbjct: 1   MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY-AGNLENLADVEDSPRYRFVQGD 59

Query: 90  VTEPLLIE-------VDQIYHLACPAS---PIFYKYNPVKTIKTNVIGTLNMLGLAKR-- 137
           + +  L++        D + H A  +     I     P   I+TNV+GT  +L  A++  
Sbjct: 60  ICDRELVDRLFKEYQPDAVVHFAAESHVDRSI---DGPAPFIQTNVVGTYTLLEAARKYW 116

Query: 138 VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE 197
              R    ST EVYGD      D+  +    P    S Y   K  ++ L+  Y R +G+ 
Sbjct: 117 GKFRFHHISTDEVYGD---LGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTYGLP 173

Query: 198 IRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
             I R  N YGP    +  +++   I  A+ G+PL V   G Q R + YV D
Sbjct: 174 ATITRCSNNYGPYQFPE--KLIPLMIINALLGKPLPVYGDGLQIRDWLYVED 223

Length = 340

>gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase

 Score =  109 bits (275), Expect = 2e-28
 Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 17/227 (7%)

Query: 34  RILVTGGAGFIGSHLVDK-LMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
           RILVTGGAGFIGS+ V   L E+   EVIV+D   + G+ +NL     +PR+  ++ D+ 
Sbjct: 1   RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIG 60

Query: 92  EPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARI 142
           +  L+       + D + H A  +        P   I+TNV+GT  +L   ++     R 
Sbjct: 61  DRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRF 120

Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
              ST EVYGD     +    +    P+   S Y   K  ++ L+  YHR +G+   I R
Sbjct: 121 HHISTDEVYGD----LEKGDAFTETTPLAPSSPYSASKAASDHLVRAYHRTYGLPALITR 176

Query: 203 IFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
             N YGP    +  +++   I  A+ G+PL V   G Q R + YV D
Sbjct: 177 CSNNYGPYQFPE--KLIPLMITNALAGKPLPVYGDGQQVRDWLYVED 221

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317

>gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs

 Score =  103 bits (259), Expect = 4e-26
 Identities = 66/237 (27%), Positives = 95/237 (40%), Gaps = 31/237 (13%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRH 88
           R L+TG  G  GS+L + L+E    EV  +      S       I H      R  L   
Sbjct: 1   RALITGITGQDGSYLAEFLLEK-GYEVHGIV---RRSSSFNTDRIDHLYINKDRITLHYG 56

Query: 89  DVTEPL-LIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVG 139
           D+T+   L         D+IYHLA  +       +P  T + N +GTLN+L   +   + 
Sbjct: 57  DLTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLD 116

Query: 140 ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIR 199
           AR    S+SE YG     PQ E+      P   RS Y   K  A+ +  +Y   +G+   
Sbjct: 117 ARFYQASSSEEYGKVQELPQSET-----TPFRPRSPYAVSKLYADWITRNYREAYGLFAV 171

Query: 200 IARIFNTYGPRMNIDDG-RVVSNFIAQAIRG--EPLTVQAPG--TQTRSFCYVSDMV 251
             R+FN  GPR       R ++  +A+   G    L +   G     R +    D V
Sbjct: 172 NGRLFNHEGPRRGETFVTRKITRQVARIKAGLQPVLKL---GNLDAKRDWGDARDYV 225

GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase

 Score =  102 bits (256), Expect = 2e-25
 Identities = 77/252 (30%), Positives = 116/252 (46%), Gaps = 33/252 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK----WIGHPRFEL--I 86
           + I + G  GFIGSHL +KLM    ++V+ +D Y    K  L      W G  +F    I
Sbjct: 15  LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINI 74

Query: 87  RHDVTEPLLIEV-DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT 145
           +HD     LI++ D   +LA   +P  Y   P+ TI +N I  L ++        R++  
Sbjct: 75  KHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHF 134

Query: 146 STSEVYGD------PLVHP--QDESYW---GNVNPI------GVRSCYDEGKRVAETLMF 188
           ST EVYG       P  HP  QD +++    + +P         R  Y   K++ E L++
Sbjct: 135 STCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIY 194

Query: 189 DYHRQHGIEIRIARIFNTYGPRMNIDDG---------RVVSNFIAQAIRGEPLTVQAPGT 239
               ++G+E  I R FN  GPRM+   G         RV++ F    +R EPL +   G 
Sbjct: 195 AEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQ 254

Query: 240 QTRSFCYVSDMV 251
             R+F Y+ D +
Sbjct: 255 SQRTFVYIKDAI 266

Length = 386

>gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs

 Score =  100 bits (251), Expect = 7e-25
 Identities = 71/236 (30%), Positives = 109/236 (46%), Gaps = 28/236 (11%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN---YFTGS--KDNLRKWIGHPRFELIR 87
           M+ILVTG AGFIG H+  +L+E   +EV+ +DN   Y+     +  L        F+ ++
Sbjct: 1   MKILVTGAAGFIGFHVAKRLLE-RGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVK 59

Query: 88  HDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 140
            D+ +   +       E D + HLA  A   +   NP   + +N++G LN+L L +  G 
Sbjct: 60  GDLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGV 119

Query: 141 R-ILLTSTSEVYGDPLVHPQDESYWGNVN-PIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
           + ++  S+S VYG     P  E     V+ PI   S Y   K+  E +   Y   +GI  
Sbjct: 120 KHLVYASSSSVYGLNTKMPFSED--DRVDHPI---SLYAATKKANELMAHTYSHLYGIPT 174

Query: 199 RIARIFNTYGPRMNIDDGR---VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
              R F  YGP      GR    +  F    + G+P+ V   G  +R F Y+ D+V
Sbjct: 175 TGLRFFTVYGPW-----GRPDMALFLFTKAILEGKPIDVFNDGNMSRDFTYIDDIV 225

This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332

>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

 Score = 99.1 bits (248), Expect = 2e-24
 Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 41/247 (16%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ++LVTGGAG+IGSH V +L+E    +V+V+DN   G ++ L   I   R E    D+ + 
Sbjct: 1   KVLVTGGAGYIGSHTVVELLE-AGYDVVVLDNLSNGHREAL-PRIEKIRIEFYEGDIRDR 58

Query: 94  LLIE-------VDQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVGA 140
             ++       +D + H A        K        P+K    NV+GTLN+L   +  G 
Sbjct: 59  AALDKVFAEHKIDAVIHFAA------LKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGV 112

Query: 141 -RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIR 199
              + +S++ VYG+P   P  E       P+   + Y   K + E ++ D  +  G+   
Sbjct: 113 KNFVFSSSAAVYGEPETVPITEEA-----PLNPTNPYGRTKLMVEQILRDLAKAPGLNYV 167

Query: 200 IARIFNTYGPRMNID---DGRVVSN---FIAQAIRG--EPLTV------QAPGTQTRSFC 245
           I R FN  G   +     D ++ +N   ++ Q   G  E L +         GT  R + 
Sbjct: 168 ILRYFNPAGAHPSGLIGEDPQIPNNLIPYVLQVALGRREKLAIFGDDYPTPDGTCVRDYI 227

Query: 246 YVSDMVC 252
           +V D+  
Sbjct: 228 HVVDLAD 234

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323

>gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs

 Score = 97.0 bits (242), Expect = 9e-24
 Identities = 77/245 (31%), Positives = 109/245 (44%), Gaps = 37/245 (15%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRK-----WIGHPRF-ELIR 87
           I+VTGGAGFIGS+LV  L E    +++VVDN   G K  NL       +I    F + +R
Sbjct: 2   IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLKIADYIDKDDFKDWVR 61

Query: 88  HDVTEPLLIEVDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
               E   IE   I+H  AC  +      +    +  N   T  +L        R +  S
Sbjct: 62  KG-DENFKIEA--IFHQGACSDTTET---DGKYMMDNNYQYTKELLHYCLEKKIRFIYAS 115

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD-YHRQHGIE--IRIA-- 201
           ++ VYG+  +   ++    N+ P+ V   Y   K     L+FD + R+HG E   ++   
Sbjct: 116 SAAVYGNGSLGFAEDIETPNLRPLNV---YGYSK-----LLFDQWARRHGKEVLSQVVGL 167

Query: 202 RIFNTYGPRMNIDDGR---VVSNFIAQAIRGEPLTV------QAPGTQTRSFCYVSDMVC 252
           R FN YGPR     GR   VV +   Q   GE + +       A G Q R F YV D+V 
Sbjct: 168 RYFNVYGPREY-HKGRMASVVFHLFNQIKAGEKVKLFKSSDGYADGEQLRDFVYVKDVVK 226

Query: 253 KSCFL 257
            + F 
Sbjct: 227 VNLFF 231

This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317

>gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE

 Score = 97.0 bits (242), Expect = 1e-23
 Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 31/241 (12%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR-FELIRHDVTE 92
           +ILVTGGAG+IGSH V +L+E+   EV+++DN   GS++ L            +  D+ +
Sbjct: 1   KILVTGGAGYIGSHTVRQLLESGH-EVVILDNLSNGSREAL-PRGERITPVTFVEGDLRD 58

Query: 93  PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
             L+       ++D + H A   +       P+K  + NV+GTLN+L   ++ G  + + 
Sbjct: 59  RELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFIF 118

Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR-QHGIEIRIARI 203
           +S++ VYG+P   P  E       P+G  + Y   K ++E ++ D  +        I R 
Sbjct: 119 SSSAAVYGEPSSIPISEDS-----PLGPINPYGRSKLMSEQILRDLQKADPDWSYVILRY 173

Query: 204 FNTYGPRMNIDDGRVVSN------FIAQAIRG--EPLTV------QAPGTQTRSFCYVSD 249
           FN  G   + D G           +  Q   G  + LT+         GT  R + +V D
Sbjct: 174 FNVAGAHPSGDIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMD 233

Query: 250 M 250
           +
Sbjct: 234 L 234

Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328

>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

 Score = 96.5 bits (241), Expect = 2e-23
 Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 30/190 (15%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           M++LVTGGAG+IGSH V +L++   +EV+V+DN   G K  L K       +    D+  
Sbjct: 1   MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLSNGHKIALLKLQF----KFYEGDLLD 55

Query: 92  EPLLIEV------DQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG 139
             LL  V      D + H A                NP+K    NV+GTLN++    + G
Sbjct: 56  RALLTAVFEENKIDAVVHFAA------SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTG 109

Query: 140 AR-ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
            +  + +ST+ VYG+P   P  E+      P+   + Y   K ++E ++ D  + +  ++
Sbjct: 110 VKKFIFSSTAAVYGEPTTSPISETS-----PLAPINPYGRSKLMSEEILRDAAKANPFKV 164

Query: 199 RIARIFNTYG 208
            I R FN  G
Sbjct: 165 VILRYFNVAG 174

Length = 329

>gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional

 Score = 94.8 bits (236), Expect = 1e-22
 Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 28/236 (11%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
            ++L+ G  GFIG HL  +++E    EV  +D       D L   + HPR      D+T 
Sbjct: 2   KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM----QTDRLGDLVNHPRMHFFEGDITI 57

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                E  + + D I  L   A+P  Y   P++  + +    L ++  A + G  ++  S
Sbjct: 58  NKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPS 117

Query: 147 TSEVYG---DPLVHPQDES--YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
           TSEVYG   D    P + S   +G +N    R  Y   K++ + +++ Y  + G+   + 
Sbjct: 118 TSEVYGMCPDEEFDP-EASPLVYGPINK--PRWIYACSKQLMDRVIWAYGMEEGLNFTLF 174

Query: 202 RIFNTYGPRMNIDD--------GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
           R FN  GP +  D          RVV+ F+   +RGEP+++   G+Q R+F  + D
Sbjct: 175 RPFNWIGPGL--DSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDD 228

Length = 347

>gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional

 Score = 87.8 bits (217), Expect = 5e-20
 Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 23/234 (9%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
           +IL+TGGAGFIGS LV  ++    + V+VVD   + G+  +L       RF   + D+ +
Sbjct: 3   KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62

Query: 93  PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA---------- 135
              +         D + HLA  +        P   I+TN++GT  +L  A          
Sbjct: 63  RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122

Query: 136 KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 195
           K+   R    ST EVYGD  +H  D+ ++    P    S Y   K  ++ L+  + R +G
Sbjct: 123 KKSAFRFHHISTDEVYGD--LHSTDD-FFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179

Query: 196 IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
           +   I    N YGP    +  +++   I  A+ G+PL V   G Q R + YV D
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKPLPVYGNGQQIRDWLYVED 231

Length = 355

>gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 25/231 (10%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKN-EVIVVD--NYFTGSKDNLRKWIGHPRFELIRHDVT 91
           IL+TG AGFI SH+ ++L+ N  + +++V+D  +Y +  K NL      P F+ ++ D+ 
Sbjct: 9   ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLK-NLNPSKSSPNFKFVKGDIA 67

Query: 92  EP-----LLI--EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RI 142
                  LLI   +D I H A          N  +  K N+ GT  +L   K  G   R 
Sbjct: 68  SADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127

Query: 143 LLTSTSEVYG----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
           +  ST EVYG    D  V   + S     NP      Y   K  AE L+  Y R +G+ +
Sbjct: 128 IHVSTDEVYGETDEDADVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPV 181

Query: 199 RIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
              R  N YGP  N    +++  FI  A++G+PL +   G+  RS+ Y  D
Sbjct: 182 ITTRGNNVYGP--NQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCED 230

Length = 668

>gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs

 Score = 84.6 bits (210), Expect = 2e-19
 Identities = 68/232 (29%), Positives = 93/232 (40%), Gaps = 49/232 (21%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---KDNLRKWIGHPRFELIR 87
               ILVTGGAG IGS LV ++++    ++IV D            LR    H +   I 
Sbjct: 1   KGKTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFII 60

Query: 88  HDVTEPLLI-------EVDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGL 134
            DV +   +         D ++H A        K       NP + IKTNV+GT N++  
Sbjct: 61  GDVRDKERLRRAFKERGPDIVFHAAA------LKHVPSMEDNPEEAIKTNVLGTKNVIDA 114

Query: 135 AKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
           A   G  + +  ST            D++    VNP+ V       KRVAE L+   +  
Sbjct: 115 AIENGVEKFVCIST------------DKA----VNPVNV---MGATKRVAEKLLLAKNEY 155

Query: 194 HG-IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF 244
               +    R  N  G R     G V+  F  Q  +G PLTV  P   TR F
Sbjct: 156 SSSTKFSTVRFGNVLGSR-----GSVLPLFKKQIKKGGPLTVTDPDM-TRFF 201

UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287

>gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional

 Score = 81.0 bits (200), Expect = 1e-17
 Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 31/243 (12%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
           M+ILVTGGAGFIGS +V  ++ N ++ V+ VD   + G+ ++L       R+     D+ 
Sbjct: 1   MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADIC 60

Query: 92  EPLLIEVDQIY---------HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA------- 135
           +    E+D+I+         HLA  +        P   I+TN++GT  +L  A       
Sbjct: 61  D--RAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSAL 118

Query: 136 ---KRVGARILLTSTSEVYGDPLVHPQDES------YWGNVNPIGVRSCYDEGKRVAETL 186
              K+   R    ST EVYGD L HP +         +         S Y   K  ++ L
Sbjct: 119 DEDKKNAFRFHHISTDEVYGD-LPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHL 177

Query: 187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY 246
           +  + R +G+   +    N YGP    +  +++   I  A+ G+PL +   G Q R + Y
Sbjct: 178 VRAWLRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLY 235

Query: 247 VSD 249
           V D
Sbjct: 236 VED 238

Length = 352

>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 66/253 (26%), Positives = 92/253 (36%), Gaps = 58/253 (22%)

Query: 15  KPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN--------- 65
           +PP                 +LVTGG G IGS L  ++++    E+I+            
Sbjct: 234 RPPVALDTELIGAMLT-GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLID 292

Query: 66  -YFTGSKDNLRKW--IGHPR-FELIRHDVTEPLLIEVDQIYHLACPASPIFYK------Y 115
                    L+    IG  R  + +   +      +VD ++H A        K      Y
Sbjct: 293 MELREKFPELKLRFYIGDVRDRDRVERAMEG---HKVDIVFHAAA------LKHVPLVEY 343

Query: 116 NPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174
           NP + IKTNV+GT N+   A + G  + +L ST +                 VNP  V  
Sbjct: 344 NPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA----------------VNPTNV-- 385

Query: 175 CYDEGKRVAETLMFDYHRQHGIE---IRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEP 231
                KR+AE L    +R          + R  N  G R     G V+  F  Q   G P
Sbjct: 386 -MGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-----GSVIPLFKKQIAEGGP 439

Query: 232 LTVQAPGTQTRSF 244
           LTV  P   TR F
Sbjct: 440 LTVTDP-DMTRFF 451

Length = 588

>gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase

 Score = 78.1 bits (193), Expect = 6e-17
 Identities = 59/241 (24%), Positives = 96/241 (39%), Gaps = 42/241 (17%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEP 93
           I+VTGGAGFIGS+LV  L E    +++VVDN   G K  NL          +I   + + 
Sbjct: 1   IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLAD-------LVIADYIDKE 53

Query: 94  LLIE---------VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
             ++         ++ I+H  AC  +    + +    ++ N   +  +L      G   +
Sbjct: 54  DFLDRLEKGAFGKIEAIFHQGACSDT---TETDGEYMMENNYQYSKRLLDWCAEKGIPFI 110

Query: 144 LTSTSEVYGD-PLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIA 201
             S++  YGD      +       +N  G  +  +D+   V   ++ +      + +   
Sbjct: 111 YASSAATYGDGEAGFREGRELERPLNVYGYSKFLFDQ--YVRRRVLPEALSAQVVGL--- 165

Query: 202 RIFNTYGPRMNIDDGR---VVSNFIAQAIRGEPLTVQ--------APGTQTRSFCYVSDM 250
           R FN YGPR     G+   V  +   Q   G    V+          G Q R F YV D+
Sbjct: 166 RYFNVYGPREY-HKGKMASVAFHLFNQIKAGG--NVKLFKSSEGFKDGEQLRDFVYVKDV 222

Query: 251 V 251
           V
Sbjct: 223 V 223

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 78.1 bits (193), Expect = 7e-17
 Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 30/227 (13%)

Query: 35  ILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ILVTG  GF+GS+LV  L+    +   +V      GS   L         E++  D+T+ 
Sbjct: 1   ILVTGATGFLGSNLVRALLAQGYRVRALVRS----GSDAVLLD---GLPVEVVEGDLTDA 53

Query: 94  LLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147
             +       D+++HLA   S  + K    +  +TNV GT N+L  A   G  R++ TS+
Sbjct: 54  ASLAAAMKGCDRVFHLAAFTSL-WAKDRK-ELYRTNVEGTRNVLDAALEAGVRRVVHTSS 111

Query: 148 SEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI---ARIF 204
               G P     DE+     N     + Y   K +AE  + +   + G+++ I   + +F
Sbjct: 112 IAALGGPPDGRIDET--TPWNERPFPNDYYRSKLLAELEVLEAAAE-GLDVVIVNPSAVF 168

Query: 205 NTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
                      G  V +++   +   P     PG    SF  V D+ 
Sbjct: 169 GPGDEGPTS-TGLDVLDYLNGKLPAYP-----PGGT--SFVDVRDVA 207

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs

 Score = 75.6 bits (186), Expect = 6e-16
 Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 42/196 (21%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M++L+TGGAG IGSHL++ L+E   ++V+V+DN+ TG +++L     HP   ++   + +
Sbjct: 1   MKVLITGGAGQIGSHLIEHLLER-GHQVVVIDNFATGRREHLPD---HPNLTVVEGSIAD 56

Query: 93  PLLIEV-------DQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGA-R 141
             L++        D + H A  A+   YK +P    +   TNV+G  N++  AK+ G  R
Sbjct: 57  KALVDKLFGDFKPDAVVHTA--AA---YK-DPDDWYEDTLTNVVGGANVVQAAKKAGVKR 110

Query: 142 ILLTSTSEVYGDP-------LVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 194
           ++   T+  YG         L HP          P G  S Y   K   E     Y    
Sbjct: 111 LIYFQTALCYGLKPMQQPIRLDHP--------RAPPG--SSYAISKTAGE----YYLELS 156

Query: 195 GIEIRIARIFNTYGPR 210
           G++    R+ N  GPR
Sbjct: 157 GVDFVTFRLANVTGPR 172

Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307

>gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional

 Score = 75.9 bits (186), Expect = 6e-16
 Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 26/243 (10%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RK 76
           +K   +  R L+TG AGFIGS L+++L+   +  VI +DN+ TG + NL          +
Sbjct: 9   TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQT-VIGLDNFSTGYQHNLDDVRTSVSEEQ 67

Query: 77  WIGHPRFELIRHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 131
           W    RF  I+ D+      +     VD + H A   S      +P+ T   N+ G LNM
Sbjct: 68  W---SRFIFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNM 124

Query: 132 LGLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY 190
           L  A+    +     ++S  YGD    P+ E   G   P+   S Y   K V E     +
Sbjct: 125 LTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGR--PL---SPYAVTKYVNELYADVF 179

Query: 191 HRQHGIEIRIARIFNTYGPRMNIDDG--RVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS 248
            R +       R FN +G R N +     V+  +I   ++ EP+ +   G+ +R FCY+ 
Sbjct: 180 ARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIE 239

Query: 249 DMV 251
           +++
Sbjct: 240 NVI 242

Length = 348

>gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein

 Score = 73.3 bits (181), Expect = 2e-15
 Identities = 60/220 (27%), Positives = 87/220 (39%), Gaps = 50/220 (22%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWIGHPRFELIRHDVT 91
           +LVTGG G IGS L  ++++    ++I+         +    LR+    P+      DV 
Sbjct: 1   VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIRQELRQEYNDPKLRFFIGDVR 60

Query: 92  EPLLIE-------VDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGLAKRV 138
           +   +E       VD ++H A        K      YNP++ IKTNV+GT N+   A   
Sbjct: 61  DRERLERAMEQHGVDTVFHAAA------LKHVPLVEYNPMEAIKTNVLGTENVAEAAIEN 114

Query: 139 GA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF---DYHRQH 194
           G  + +L ST            D++    VNP  V       KR+AE L           
Sbjct: 115 GVEKFVLIST------------DKA----VNPTNV---MGATKRLAEKLFQAANRESGSG 155

Query: 195 GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTV 234
                + R  N  G R     G V+  F  Q   G P+TV
Sbjct: 156 KTRFSVVRFGNVLGSR-----GSVIPLFKKQIANGGPVTV 190

This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280

>gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 71/238 (29%), Positives = 115/238 (48%), Gaps = 34/238 (14%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           R+L+ G  GFIG+HL ++L+ ++  EV  +D    GS D + +++GHPRF  +  D++  
Sbjct: 317 RVLILGVNGFIGNHLTERLLRDDNYEVYGLD---IGS-DAISRFLGHPRFHFVEGDIS-- 370

Query: 94  LLIEVDQI-YH---------LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
             I  + I YH         L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 371 --IHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRII 428

Query: 144 LTSTSEVYG---DPLVHPQDESYWGN--VNPIG-VRSCYDEGKRVAETLMFDYHRQHGIE 197
             STSEVYG   D     +D S   N  V PI   R  Y   K++ + +++ Y  + G+ 
Sbjct: 429 FPSTSEVYGMCTDK-YFDEDTS---NLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLR 484

Query: 198 IRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
             + R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D
Sbjct: 485 FTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRD 542

Length = 660

>gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs

 Score = 71.8 bits (177), Expect = 9e-15
 Identities = 60/230 (26%), Positives = 90/230 (39%), Gaps = 30/230 (13%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRKWIGHPRFELIRHDVTE 92
           +ILVTG  G +GS +V  L       V+     F  SK+ +L              +   
Sbjct: 1   KILVTGHRGLVGSAIVRVLARRGYENVV-----FRTSKELDLTDQ-----------EAVR 44

Query: 93  PLLIEV--DQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVGARILLT-STS 148
               +   D + HLA     I      P   ++ N++   N++  A R G + L+   +S
Sbjct: 45  AFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVKKLVFLGSS 104

Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF-NTY 207
            +Y D    P DES      P      Y   KR    L   Y +Q+G +  I+ +  N Y
Sbjct: 105 CIYPDLAPQPIDESDLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQYGCDY-ISVMPTNLY 163

Query: 208 GPRMNID--DGRVVSNFIAQAIR-----GEPLTVQAPGTQTRSFCYVSDM 250
           GP  N D  +  V+   I +        G+ +TV   GT  R F Y  D+
Sbjct: 164 GPHDNFDPENSHVIPALIRKFHEAKLRGGKEVTVWGSGTPRREFLYSDDL 213

GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase

 Score = 69.1 bits (169), Expect = 1e-13
 Identities = 59/235 (25%), Positives = 95/235 (40%), Gaps = 21/235 (8%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD---NYFTGSKDNLRKWIGHPRFELI 86
              +RI +TG  GFI SH+  +L   E + +I  D   N          ++      +L 
Sbjct: 19  SEKLRICITGAGGFIASHIARRLKA-EGHYIIASDWKKNEHMSEDMFCHEFH---LVDLR 74

Query: 87  RHDVTEPLLIEVDQIYHLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
             +    +   VD +++LA     + F + N    +  N + + NML  A+  G  R   
Sbjct: 75  VMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFY 134

Query: 145 TSTSEVYG-----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIR 199
            S++ +Y      +  V  ++   W    P   +  Y   K   E L   Y +  GIE R
Sbjct: 135 ASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLATEELCKHYTKDFGIECR 190

Query: 200 IARIFNTYGPRMNIDDGR--VVSNFIAQAIRG-EPLTVQAPGTQTRSFCYVSDMV 251
           I R  N YGP      GR    + F  +A+   +   +   G QTRSF ++ + V
Sbjct: 191 IGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECV 245

Length = 370

>gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs

 Score = 67.1 bits (164), Expect = 7e-13
 Identities = 61/224 (27%), Positives = 91/224 (40%), Gaps = 26/224 (11%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
            +LVTGG+GF G  LV +L+E     V   D    G    L  W  HP  E ++ D+T+ 
Sbjct: 1   SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEA--LSAW-QHPNIEFLKGDITDR 57

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPVKTI-KTNVIGTLNMLGLAKRVGARILL-TS 146
             +E      D ++H A           P     + NV GT N+L   +R G +  + TS
Sbjct: 58  NDVEQALSGADCVFHTAAIVPL----AGPRDLYWEVNVGGTQNVLDACQRCGVQKFVYTS 113

Query: 147 TSEV-YGDPLVHPQDESYWGNVNPIGVRS--CYDEGKRVAETLMFDYHRQHGIEIRIARI 203
           +S V +G   +H  DE+      P        Y E K +AE ++ + + +  +     R 
Sbjct: 114 SSSVIFGGQNIHNGDETL-----PYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCALRP 168

Query: 204 FNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV 247
              +GP     D  +V      A +G    V   G     F YV
Sbjct: 169 AGIFGPG----DQGLVPILFEWAEKGLVKFVFGRGNNLVDFTYV 208

Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331

>gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 71/248 (28%), Positives = 106/248 (42%), Gaps = 42/248 (16%)

Query: 28  FFQSNMRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYF-TGSKDNL-RKWIG 79
           F+Q   R+LVTG  GF GS L   L E          +     N F   + DN      G
Sbjct: 1   FWQ-GKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNKISSTRG 59

Query: 80  HPR-FELIRHDVTEPLLIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLA 135
             R    +R  + E    E + ++HLA  A P+    YK +PV+T +TNV+GT+N+L   
Sbjct: 60  DIRDLNALREAIRE---YEPEIVFHLA--AQPLVRLSYK-DPVETFETNVMGTVNLLEAI 113

Query: 136 KRVG-ARILLTSTSE-VYGDPLVHPQDESYWGNV--NPIGVRSCYDEGKRVAETLMFDYH 191
           +  G  + ++  TS+  Y +       E  WG    +P+G    Y   K  AE ++  Y 
Sbjct: 114 RETGSVKAVVNVTSDKCYEN------KEWGWGYRENDPLGGHDPYSSSKGCAELIISSYR 167

Query: 192 R---------QHGIEIRIARIFNTY-GPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT 241
                     +HGI I  AR  N   G     D  R+V + I     GE + ++ P    
Sbjct: 168 NSFFNPENYGKHGIAIASARAGNVIGGGDWAED--RIVPDCIRAFEAGERVIIRNPNA-I 224

Query: 242 RSFCYVSD 249
           R + +V +
Sbjct: 225 RPWQHVLE 232

This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336

>gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 57/225 (25%), Positives = 88/225 (39%), Gaps = 54/225 (24%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M+IL+TG  GFIG +L+ +L E + +++   D                   EL      +
Sbjct: 1   MKILITGAKGFIGKNLIARLKEQKDDDIFFYD-------------RESDESEL------D 41

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTSEV 150
             L   D I+HLA    P     +  +    NV  T  +L    R G +  ILL+S+ + 
Sbjct: 42  DFLQGADFIFHLAGVNRP----KDEAEFESGNVGLTERLLDALTRNGKKPPILLSSSIQA 97

Query: 151 YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG-- 208
             D              NP      Y + K  AE L+ +Y R+ G  + I R+ N +G  
Sbjct: 98  ALD--------------NP------YGKSKLAAEELLQEYARETGAPVYIYRLPNVFGKW 137

Query: 209 --PRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             P  N      V+ F     R  P+ +  P     +  Y+ D+V
Sbjct: 138 CRPNYN----SAVATFCYNIARDLPIQINDPAA-ELTLVYIDDVV 177

This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248

>gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 26/203 (12%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M++L+TG +GF+G  L ++L+ +  NE +++ +  +    +     G PR   I  D+  
Sbjct: 1   MKVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPS-----GAPRVTQIAGDLAV 55

Query: 93  PLLIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILL 144
           P LIE       D ++HLA   S      +     + NV GT N+L   ++ G   R + 
Sbjct: 56  PALIEALANGRPDVVFHLAAIVSGGAEA-DFDLGYRVNVDGTRNLLEALRKNGPKPRFVF 114

Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
           TS+  VYG PL +P  +     ++P    S Y   K + E L+ DY R+  ++ R  R+ 
Sbjct: 115 TSSLAVYGLPLPNPVTDHT--ALDPA---SSYGAQKAMCELLLNDYSRRGFVDGRTLRL- 168

Query: 205 NTYGPRMNIDDGRVVSNFIAQAI 227
               P + +  GR   N  A A 
Sbjct: 169 ----PTVCVRPGR--PNKAASAF 185

Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

 Score = 64.3 bits (157), Expect = 7e-12
 Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 23/193 (11%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEV--IVVDNY-FTGSKDNLRK--WIGHPRFELIRH 88
             L+TG  G  GS+L  +L+  +  EV  I   +  F   + +L +   +  PR  L   
Sbjct: 4   VALITGITGQDGSYLA-ELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYG 62

Query: 89  DVTEP-----LLIEV--DQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
           D+T+      +L EV  D+IY+LA  +   + ++  P  T   + IGTL +L   + +G 
Sbjct: 63  DLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFE-QPEYTADVDAIGTLRLLEAIRILGE 121

Query: 140 --ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE 197
              R    STSE+YG     PQ E+      P   RS Y   K  A  +  +Y   +G+ 
Sbjct: 122 KKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGLF 176

Query: 198 IRIARIFNTYGPR 210
                +FN   P 
Sbjct: 177 ACNGILFNHESPL 189

Length = 345

>gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 72/255 (28%), Positives = 115/255 (45%), Gaps = 53/255 (20%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIR 87
           MR+LVTGG+G+IGSH   +L++N  ++V+++DN    SK ++   I       P F  + 
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILDN-LCNSKRSVLPVIERLGGKHPTF--VE 56

Query: 88  HDV-TEPLLIE------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLG 133
            D+  E LL E      +D + H A           P+ Y  N       NV GTL ++ 
Sbjct: 57  GDIRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLIS 109

Query: 134 LAKRVGAR-ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYH 191
             +    + ++ +S++ VYGD    P  ES+     P G  +S Y + K + E ++ D  
Sbjct: 110 AMRAANVKNLIFSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQ 164

Query: 192 R-QHGIEIRIARIFNTYGPR----MNIDDGRVVSN---FIAQAI--RGEPLTV------Q 235
           + Q    I + R FN  G      M  D   + +N   +IAQ    R + L +       
Sbjct: 165 KAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPT 224

Query: 236 APGTQTRSFCYVSDM 250
             GT  R + +V D+
Sbjct: 225 EDGTGVRDYIHVMDL 239

Length = 338

>gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 69/279 (24%), Positives = 93/279 (33%), Gaps = 68/279 (24%)

Query: 33  MRILVTGGAGFIG----SHLVDKLMENEKNEVIVVDNYFTGSKDN--------------- 73
           M++L+ GG G+ G     HL  +      +EV +VDN      D                
Sbjct: 1   MKVLILGGDGYCGWPTALHLSKR-----GHEVCIVDNLVRRRIDVELGLESLTPIASIHE 55

Query: 74  -LRKW---IGHPRFELIRHDVTEPLL-------IEVDQIYHLA----CPASPIFYKYNPV 118
            LR W    G    E    D  +           E D + H A     P S I  + +  
Sbjct: 56  RLRAWKELTGK-TIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMI-DREHAN 113

Query: 119 KTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLVHPQDESYWGNVN-------- 168
            T   NVIGTLN+L   K       ++   T   YG P +    E Y    +        
Sbjct: 114 YTQHNNVIGTLNLLFAIKEFDPDCHLVKLGTMGEYGTPNI-DIPEGYITIEHNGRRDTLP 172

Query: 169 -PIGVRSCYDEGKRVAETLMFDYHRQHGIEI---RIARIFNTYGPRMNIDD--------- 215
            P    S Y   K      +    +  GI I       ++ T       D+         
Sbjct: 173 YPKQAGSWYHLSKVHDSHNIMFACKAWGIRITDLNQGVVYGTKTEETEADERLINRFDYD 232

Query: 216 ---GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
              G V++ F  QA  G PLTV   G QTR F  + D V
Sbjct: 233 GVFGTVLNRFCVQAAIGHPLTVYGKGGQTRGFISIRDTV 271

Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 48/202 (23%)

Query: 37  VTGGAGFIGSHLVDKLMENEKNEVIVV----DNYFTGSKDNLRKWIGHPRFELIRH---- 88
           +TG  GF+G  L++KL+ +     I       +  +  +   ++ + +  F+ ++     
Sbjct: 1   LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60

Query: 89  -----DVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIK-TNVIGTLNM 131
                D++EP L            EVD I H A  A+  F +  P   ++ TNV+GT  +
Sbjct: 61  IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNA--ATVNFVE--PYSDLRATNVLGTREV 116

Query: 132 LGLAKRVGARILL-TSTSEVYGDPLVHPQDE----------SYWGNVNPIGVRSCYDEGK 180
           L LAK++        ST+ V G+     +++             G  N       Y + K
Sbjct: 117 LRLAKQMKKLPFHHVSTAYVNGERGGLLEEKPYKLDEDEPALLGGLPNG------YTQSK 170

Query: 181 RVAETLMFDYHRQHGIEIRIAR 202
            +AE L+ +     G+ + I R
Sbjct: 171 WLAEQLVREAAG--GLPVVIYR 190

This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245

>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 27/196 (13%)

Query: 36  LVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP- 93
           LVTGG GF+G H+V  L+ E E  EV V D  F+         +       I  DVT+  
Sbjct: 1   LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQ--VITYIEGDVTDKQ 58

Query: 94  ----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL-TSTS 148
                L   D + H A     +F K      +K NV GT N+L    + G R+L+ TS+ 
Sbjct: 59  DLRRALQGSDVVIHTAA-IIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSM 117

Query: 149 EV-----YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL--------MFDYHRQHG 195
           EV     YG P+V+  + + +        +  Y E K +AE L        + +  R + 
Sbjct: 118 EVVGPNSYGQPIVNGDETTPY----ESTHQDPYPESKALAEKLVLKANGSTLKNGGRLYT 173

Query: 196 IEIRIARIFNTYGPRM 211
             +R A IF    P +
Sbjct: 174 CALRPAGIFGEGDPFL 189

The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280

>gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 63/231 (27%), Positives = 88/231 (38%), Gaps = 39/231 (16%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ++LVTG  GFIG  LVDKL+   +   I V N                  EL   D    
Sbjct: 1   KVLVTGANGFIGRALVDKLLSRGEEVRIAVRN-------AENAEPSVVLAELPDIDSFTD 53

Query: 94  LLIEVDQIYHLAC------PASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILL 144
           L + VD + HLA                Y  V     N   T  +   A R G +  + L
Sbjct: 54  LFLGVDAVVHLAARVHVMNDQGADPLSDYRKV-----NTELTRRLARAAARQGVKRFVFL 108

Query: 145 TSTSEVYGDPLVH-PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
            S+ +V G+  V  P DE+      P   +  Y   K  AE  + +     G+E+ I R 
Sbjct: 109 -SSVKVNGEGTVGAPFDET--DPPAP---QDAYGRSKLEAERALLELGASDGMEVVILRP 162

Query: 204 FNTYGPRMNIDDGRVVSNF--IAQAI-RGEPLTVQAPGTQTRSFCYVSDMV 251
              YGP +         NF  + + I RG PL   A   + RS   + ++V
Sbjct: 163 PMVYGPGVR-------GNFARLMRLIDRGLPLPPGAVKNR-RSLVSLDNLV 205

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303

>gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 51/254 (20%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSKDNLRKWIGHPRFELIRHDV 90
            ILVTGGAG+IGSH V +L+     +V+V+DN       +   +++  G     L+ H V
Sbjct: 7   TILVTGGAGYIGSHTVLQLLL-AGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKV 65

Query: 91  T-------EPLLIE--VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
                   E +      D + H A         A P+ Y  N       N++GT+N+L +
Sbjct: 66  DLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDN-------NLVGTINLLEV 118

Query: 135 AKRVGARILLTSTS-EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
             + G + L+ S+S  VYG P   P  E +     P+   + Y   K   E +  D H  
Sbjct: 119 MAKHGCKKLVFSSSATVYGQPEEVPCTEEF-----PLSATNPYGRTKLFIEEICRDIHAS 173

Query: 194 HGIEIRIA--RIFNTYG--PRMNI-DDGRVVSN----FIAQ-AI-RGEPLTV------QA 236
              E +I   R FN  G  P   I +D + + N    ++ Q A+ R   LTV        
Sbjct: 174 DP-EWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTK 232

Query: 237 PGTQTRSFCYVSDM 250
            GT  R + +V D+
Sbjct: 233 DGTGVRDYIHVMDL 246

Length = 352

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 20/122 (16%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDV 90
           + VTGG GF+G HLV +L+EN    +++V +      +   +         R  ++  D+
Sbjct: 1   VFVTGGTGFLGRHLVKRLLENGFKVLVLVRS--ESLGEAHERIEEAGLEADRVRVLEGDL 58

Query: 91  TEP-----------LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           T+P           L  +VD + H A  AS   ++       +TN+ GT ++L LA R+ 
Sbjct: 59  TQPNLGLSAAASRELAGKVDHVIHCA--ASY-DFQAPNEDAWRTNIDGTEHVLELAARLD 115

Query: 140 AR 141
            +
Sbjct: 116 IQ 117

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 27/129 (20%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---TGSKDNLRKWI---GHPRFELI 86
           MR  VTGG GFIG  LV +L++  +   +    +      S   L       G  R   +
Sbjct: 1   MRYFVTGGTGFIGRRLVSRLLDRRREATV----HVLVRRQSLSRLEALAAYWGADRVVPL 56

Query: 87  RHDVTEPLL----------IEVDQIYHLACPASPIFYKYNP--VKTIKTNVIGTLNMLGL 134
             D+TEP L           ++D + HLA       Y            NV GT N++ L
Sbjct: 57  VGDLTEPGLGLSEADIAELGDIDHVVHLAA-----IYDLTADEEAQRAANVDGTRNVVEL 111

Query: 135 AKRVGARIL 143
           A+R+ A   
Sbjct: 112 AERLQAATF 120

Length = 657

>gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs

 Score = 57.8 bits (140), Expect = 8e-10
 Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 39/213 (18%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
             LV GG+GF+G HLV++L+      V V D   T   D         R +    D+T+P
Sbjct: 1   SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSS----SGRVQFHTGDLTDP 56

Query: 94  LLIE-------VDQIYHLACPAS----PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARI 142
             +E        + ++H A P       ++Y        K NV GT N++   ++ G + 
Sbjct: 57  QDLEKAFNEKGPNVVFHTASPDHGSNDDLYY--------KVNVQGTRNVIEACRKCGVKK 108

Query: 143 LL--TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG----I 196
           L+  +S S V+    +   DES      P   +  Y+E K +AE L+   +         
Sbjct: 109 LVYTSSASVVFNGQDIINGDESL---PYPDKHQDAYNETKALAEKLVLKANDPESGLLTC 165

Query: 197 EIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRG 229
            +R A IF   GP     D ++V   +  A  G
Sbjct: 166 ALRPAGIF---GPG----DRQLVPGLLKAAKNG 191

This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335

>gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 49/213 (23%), Positives = 74/213 (34%), Gaps = 50/213 (23%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M+IL+TG  G +G+ L   L      EVI  D                   ++   D   
Sbjct: 1   MKILITGANGQLGTELRRALPGEF--EVIATD---------------RAELDITDPDAVL 43

Query: 93  PLLIEV--DQIYHLACPASPIFYK--YNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148
            ++ E   D + + A  A     K    P      N  G  N+   A  VGAR++  ST 
Sbjct: 44  EVIRETRPDVVINAA--AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTD 101

Query: 149 EVY---GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
            V+           D       NP+ V   Y   K   E  +     +H I +R + ++ 
Sbjct: 102 YVFDGEKGGPYKETDT-----PNPLNV---YGRSKLAGEEAVRAAGPRHLI-LRTSWVYG 152

Query: 206 TYGPRMNIDDGRVVSNFIAQAIR----GEPLTV 234
            YG           +NF+   +R    G+ L V
Sbjct: 153 EYG-----------NNFVKTMLRLAKEGKELKV 174

Length = 281

>gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 31/189 (16%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTE 92
           ILVTG AG +G  L  +L  + +   V  +D          R+  G  P+ E +R D+ +
Sbjct: 1   ILVTGAAGGLGRLLARRLAASPRVIGVDGLD---------RRRPPGSPPKVEYVRLDIRD 51

Query: 93  PLLI------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145
           P         E D + HLA    P     +  +  + NV GT N+L      G  R+++T
Sbjct: 52  PAAADVFREREADAVVHLAFILDPP---RDGAERHRINVDGTQNVLDACAAAGVPRVVVT 108

Query: 146 STSEVYG----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRI 200
           S+  VYG    +P    +D       +P      Y   K   E L+ ++ R+H  + + +
Sbjct: 109 SSVAVYGAHPDNPAPLTEDAP--LRGSP---EFAYSRDKAEVEQLLAEFRRRHPELNVTV 163

Query: 201 ARIFNTYGP 209
            R     GP
Sbjct: 164 LRPATILGP 172

Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306

>gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 23/168 (13%)

Query: 36  LVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNL---RKWIGHPRFELIRHDV 90
           LVTGG GF+G H++  L+E ++   E+ V+D  F    + +    K  G      I  D+
Sbjct: 3   LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAF--GPELIEHFEKSQGKTYVTDIEGDI 60

Query: 91  TEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL- 144
            +   +      V  + H A     +F   N  +  + NV GT  +L    +   + L+ 
Sbjct: 61  KDLSFLFRACQGVSVVIHTAAIVD-VFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLVY 119

Query: 145 TSTSEV-----YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLM 187
           TS+ EV      G P+ +  +++ + + +       Y   K +AE ++
Sbjct: 120 TSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPP----YASSKLLAENIV 163

This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354

>gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 31/184 (16%)

Query: 37  VTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP----RFELIRHDVTE 92
           VTG +GFIGS LV +L++        V +   G +  +   +       R +L + D+ +
Sbjct: 3   VTGASGFIGSWLVKRLLQRGYTVRATVRD--PGDEKKVAHLLELEGAKERLKLFKADLLD 60

Query: 93  PLLIE-----VDQIYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILL 144
               +      D ++H+A P    F  +    + I+  V GTLN+L    +  +  R++ 
Sbjct: 61  YGSFDAAIDGCDGVFHVASP--VDFDSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVVF 118

Query: 145 T-STSEVYGDPLVHPQ---DESYWGNVNPIGVRSC------YDEGKRVAETLMFDYHRQH 194
           T S + V  +P        DES W +++      C      Y   K +AE   +++  ++
Sbjct: 119 TSSVAAVVWNPNRGEGKVVDESCWSDLD-----FCKKTKLWYALSKTLAEKAAWEFAEEN 173

Query: 195 GIEI 198
           G+++
Sbjct: 174 GLDL 177

This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs

 Score = 54.6 bits (132), Expect = 8e-09
 Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 23/153 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHD 89
            +LVTG  GFI SH+V++L++        V +        L+  +       R E +  D
Sbjct: 1   LVLVTGATGFIASHIVEQLLKAGYKVRGTVRS--LSKSAKLKALLKAAGYNDRLEFVIVD 58

Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKT--IKTNVIGTLNMLGLAKRVGA- 140
                   +  L  VD + H+   ASP  +     +   I   V GTLN+L  AK  G+ 
Sbjct: 59  DLTAPNAWDEALKGVDYVIHV---ASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAAGSV 115

Query: 141 -RILLTSTSEVYGDPLVHPQ----DESYWGNVN 168
            R++LTS+    GDP          E  W ++ 
Sbjct: 116 KRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLT 148

This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301

>gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 50/211 (23%), Positives = 76/211 (36%), Gaps = 46/211 (21%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TG  G +G  LV +L   E   V+ +                  + +L   +  E 
Sbjct: 1   RILITGANGQLGRELVQQLS-PEGRVVVALT---------------RSQLDLTDPEALER 44

Query: 94  LL--IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151
           LL  I  D + + A        + +P K    N +   N+   A R GAR++  ST  V+
Sbjct: 45  LLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVF 104

Query: 152 ----GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTY 207
                 P     D       NP+ V   Y + K   E  +        I +R + ++   
Sbjct: 105 DGEGKRPY-REDDA-----TNPLNV---YGQSKLAGEQAVRAAGPNALI-VRTSWLYGGG 154

Query: 208 GPRMNIDDGRVVSNFIAQAIR----GEPLTV 234
           G R          NF+   +R    GE L V
Sbjct: 155 GGR----------NFVRTMLRLAGRGEELRV 175

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287

>gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 40/207 (19%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVV------------------DNYFTGSKDNLR 75
            +L+TG  GF+G++L+ +L++ +    I                      Y         
Sbjct: 1   TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGL--NLWDE 58

Query: 76  KWIGHPRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTN 124
             +   R +++  D+++P L            EVD I H    A+ + + Y   +    N
Sbjct: 59  LEL--SRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIH--NGAN-VNWVYPYEELKPAN 113

Query: 125 VIGTLNMLGLA-KRVGARILLTSTSEVYGDPLVHPQDESYWGN--VNPIGVRSCYDEGKR 181
           V+GT  +L LA       +   ST  V+     +  D+    +   +  G+ + Y + K 
Sbjct: 114 VLGTKELLKLAATGKLKPLHFVSTLSVFSAEEYNALDDEESDDMLESQNGLPNGYIQSKW 173

Query: 182 VAETLMFDYHRQHGIEIRIARIFNTYG 208
           VAE L+ +   + G+ + I R  N +G
Sbjct: 174 VAEKLLREAANR-GLPVAIIRPGNIFG 199

This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290

>gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 51/238 (21%), Positives = 78/238 (32%), Gaps = 59/238 (24%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN-----------------EKNEVIVVDNYFTGSKDNLR 75
           M+IL+ GG  FIG  LV++L+                   E  E IV D      +D L 
Sbjct: 1   MKILIIGGTRFIGKALVEELLAAGHDVTVFNRGRTKPDLPEGVEHIVGDRN---DRDALE 57

Query: 76  KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA 135
           + +G   F+++           VD I             Y P +            L   
Sbjct: 58  ELLGGEDFDVV-----------VDTI------------AYTPRQV--------ERALDAF 86

Query: 136 KRVGARILLTSTSEVYGDPLVHPQDESYWGN--VNPIGVRSCYDEGKRVAETLMFDYHRQ 193
           K    + +  S++ VY  P     + +         +     Y  GKR AE ++ +    
Sbjct: 87  KGRVKQYIFISSASVYLKPGRVITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEAA-- 144

Query: 194 HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
                 I R    YGP          + F  +  RG P+ V   G     F +V D+ 
Sbjct: 145 -AFPYTIVRPPYIYGPGDYTGRL---AYFFDRLARGRPILVPGDGHSLVQFIHVKDLA 198

Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250

>gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 38/233 (16%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYFT--GSKDNLRKWIGH 80
           F    ++LVTG  GF GS L   L+E          +     N F        +    G 
Sbjct: 1   FWQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGD 60

Query: 81  PR-FELIRHDVTEPLLIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK 136
            R    +R  + E    + + ++HLA  A P+    Y   P++T +TNV+GT+N+L   +
Sbjct: 61  IRDAAKLRKAIAE---FKPEIVFHLA--AQPLVRKSYAD-PLETFETNVMGTVNLLEAIR 114

Query: 137 RVG---ARILLTSTSEVYGDPLVHPQDESYWG--NVNPIGVRSCYDEGKRVAETLMFDYH 191
            +G   A + +T + + Y +      DE  WG    +P+G    Y   K  AE ++  Y 
Sbjct: 115 AIGSVKAVVNVT-SDKCYRN------DEWVWGYRETDPLGGHDPYSSSKACAELVIASYR 167

Query: 192 R-------QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP 237
                    HGI+I  AR  N  G     +D R++ + I      + + ++ P
Sbjct: 168 SSFFGVANFHGIKIASARAGNVIGGGDWAED-RLIPDVIRAFSSNKIVIIRNP 219

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349

>gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 29/223 (13%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           +L+TGG G  G+ ++ + ++ +  E+ +        +D++RK   + + +    DV +  
Sbjct: 7   LLITGGTGSFGNAVLRRFLDTDIKEIRIFSRD-EKKQDDMRKKYNNSKLKFYIGDVRDYR 65

Query: 95  LI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
            I      VD IYH A        +++P++ +KTNV+GT N+L  A   G  R++  ST 
Sbjct: 66  SILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVKRVVCLST- 124

Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
               D  V+P        +N +G+     E   VA++   D  +     I   R  N   
Sbjct: 125 ----DKAVYP--------INAMGISKAMMEKVMVAKSRNVDSSKT---VICGTRYGNVMA 169

Query: 209 PRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            R     G V+  F+     G+PLT+  P   TR    + D V
Sbjct: 170 SR-----GSVIPLFVDLIKAGKPLTITDP-NMTRFMMTLEDAV 206

The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337

>gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 47/195 (24%)

Query: 35  ILVTGGAGFIGSHLVDKLME-------------NEKNEVIVVDNYFTGSKDNLRKWIGHP 81
           +LVTG +GF+ SH+V++L+E               K    ++D         L    G  
Sbjct: 1   VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLD---------LDAKPGR- 50

Query: 82  RFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
             EL   D+T+    +        ++H+A P S  F   +P + IK  + GTLN L  A 
Sbjct: 51  -LELAVADLTDEQSFDEVIKGCAGVFHVATPVS--FSSKDPNEVIKPAIGGTLNALKAAA 107

Query: 137 RVGA--RILLTSTSEVYGDPLVHPQ----DESYWGNVN-------PIGVRSCYDEGKRVA 183
              +  R +LTS++     P  + +    DE  W              V   Y   K +A
Sbjct: 108 AAKSVKRFVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWV---YAASKTLA 164

Query: 184 ETLMFDYHRQHGIEI 198
           E   + +  ++ I++
Sbjct: 165 EKAAWKFADENNIDL 179

This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295

>gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 44/227 (19%), Positives = 80/227 (35%), Gaps = 41/227 (18%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
             V G +G IG  +  + +     +V +V         +  K    P  E++  D  +  
Sbjct: 2   AHVLGASGPIGREVA-RELRRRGWDVRLVSR-------SGSKLAWLPGVEIVAADAMDAS 53

Query: 95  LIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
            +       D IYH A PA   + +  P   +  NV+        A+  GA+++L     
Sbjct: 54  SVIAAARGADVIYHCANPAYTRWEELFP--PLMENVVAA------AEANGAKLVLPGNVY 105

Query: 150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGK-RVA-ETLMFDYHRQHGIEIRIARIFNTY 207
           +YG     P  E       P        +G+ R   E  +   H +  I   I R  + Y
Sbjct: 106 MYGPQAGSPITEDT--PFQPTT-----RKGRIRAEMEERLLAAHAKGDIRALIVRAPDFY 158

Query: 208 GPRMNIDDGRVVSNFIAQAI----RGEPLTVQAPGTQTRSFCYVSDM 250
           GP         +++++  A+    +G+             + Y+ D+
Sbjct: 159 GP-------GAINSWLGAALFAILQGKTAVFPGNLDTPHEWTYLPDV 198

These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302

>gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 56/182 (30%), Positives = 74/182 (40%), Gaps = 30/182 (16%)

Query: 34  RILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFE--LIRHDV 90
           RIL+TGG G IGS L   L +   K+ VI  D         +RK   H          DV
Sbjct: 1   RILITGGLGQIGSELAKLLRKRYGKDNVIASD---------IRKPPAHVVLSGPFEYLDV 51

Query: 91  TEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
            +   +E       +  I HLA   S +  K NP      N+ G  N+L LA+    RI 
Sbjct: 52  LDFKSLEEIVVNHKITWIIHLAALLSAVGEK-NPPLAWDVNMNGLHNVLELAREHNLRIF 110

Query: 144 LTSTSEVYGD--PLVH-PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
           + ST   +G   P  + P D        P   R+ Y   K  AE L   YH + G++ R 
Sbjct: 111 VPSTIGAFGPTTPRNNTPDDTI----QRP---RTIYGVSKVAAELLGEYYHHKFGVDFRS 163

Query: 201 AR 202
            R
Sbjct: 164 LR 165

This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308

>gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 23/118 (19%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-----GHPRF 83
             +N  IL+TGG G  G   + +L+EN   + I++  Y   S+D L++W        P  
Sbjct: 1   MFNNKSILITGGTGSFGKAFISRLLENYNPKKIII--Y---SRDELKQWEMQQKFPAPCL 55

Query: 84  ELIRHDVT-----EPLLIEVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNML 132
                DV         L  VD + H A     PA+    +YNP + I+TN+ G  N++
Sbjct: 56  RFFIGDVRDKERLTRALRGVDYVVHAAALKQVPAA----EYNPFECIRTNINGAQNVI 109

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           M++LVTG  GF+GS +V  L+E  E+  V+V          + R   G    E++  D+ 
Sbjct: 1   MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPT------SDRRNLEGLD-VEIVEGDLR 53

Query: 92  EPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145
           +P  +         ++H+A  A    +  +P +    NV GT N+L  A   G  R++ T
Sbjct: 54  DPASLRKAVAGCRALFHVA--ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYT 111

Query: 146 ST 147
           S+
Sbjct: 112 SS 113

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 28/144 (19%)

Query: 73  NLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML 132
           NLR+ I          D  +P      +IY+LA  +        P  T   + IGTL +L
Sbjct: 69  NLRRII----------DEIKP-----TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLL 113

Query: 133 ------GLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL 186
                 GL K V  +    STSE+YG     PQ+E+      P   RS Y   K  A  +
Sbjct: 114 EAVRTLGLIKSV--KFYQASTSELYGKVQEIPQNET-----TPFYPRSPYAAAKLYAHWI 166

Query: 187 MFDYHRQHGIEIRIARIFNTYGPR 210
             +Y   +G+      +FN   PR
Sbjct: 167 TVNYREAYGLFAVNGILFNHESPR 190

Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343

>gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK 71
          I+VTGGAGFIGS++V  L +    +++VVDN   G+K
Sbjct: 2  IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK 38

Length = 308

>gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 53/218 (24%), Positives = 83/218 (38%), Gaps = 55/218 (25%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           +IL+TG  G +G  LV  L E    EVI                 G  R  L + D+T+P
Sbjct: 1   KILITGATGMLGRALVRLLKERGY-EVIG---------------TGRSRASLFKLDLTDP 44

Query: 94  L-LIEV------DQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
             + E       D I + A       C + P           + NV+   N+   AK VG
Sbjct: 45  DAVEEAIRDYKPDVIINCAAYTRVDKCESDPE-------LAYRVNVLAPENLARAAKEVG 97

Query: 140 ARILLTSTSEVY---GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 196
           AR++  ST  V+     P    +D       NP+ V   Y + K + E  + + + ++ I
Sbjct: 98  ARLIHISTDYVFDGKKGPYK-EEDAP-----NPLNV---YGKSKLLGEVAVLNANPRYLI 148

Query: 197 EIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTV 234
            +R + +   YG   N      V   +  A   + + V
Sbjct: 149 -LRTSWL---YGELKN--GENFVEWMLRLAAERKEVNV 180

dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280

>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 43/219 (19%), Positives = 75/219 (34%), Gaps = 43/219 (19%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN----------EKNE----------VIVVDNYFTGSKD 72
             +L+TG  GF+G++L+ +L++            +++            +  ++   S D
Sbjct: 1   RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSAD 60

Query: 73  NLRKWIGH---PRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL 129
            +    G    P   L      E L   VD I H    A+ + + +   +    NV+GT 
Sbjct: 61  RVEVVAGDLAEPDLGLSERTWQE-LAENVDLIIH---NAALVNHVFPYSELRGANVLGTA 116

Query: 130 NMLGLAKRVGARIL-LTSTSEVYGDPLVH-------PQDESYWGNVNPIGVRSCYDEGKR 181
            +L LA     + L   S+  V                  +        G    Y   K 
Sbjct: 117 EVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNVGQGLAG---GYGRSKW 173

Query: 182 VAETLMFDYHRQHGIEIRIARIFNTYGP----RMNIDDG 216
           VAE L+ +   + G+ + I R     G      +N  D 
Sbjct: 174 VAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDF 211

Length = 382

>gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 34/152 (22%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVV----DNYFTGSKD--NLRKWIGHPRFEL 85
             +L+TG  GF+G  L++KL+ +  +   I +     +  +  +    L K     R   
Sbjct: 1   KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRN 60

Query: 86  -----------IRHDVTEP-----------LLIEVDQIYHLACPASPIFYKYNPVKTIKT 123
                      I  D++EP           L+ EV+ I H A  A+  F +    + +  
Sbjct: 61  LNPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCA--ATVTFDERLD-EALSI 117

Query: 124 NVIGTLNMLGLAKRV--GARILLTSTSEVYGD 153
           NV+GTL +L LAKR       +  ST+ V GD
Sbjct: 118 NVLGTLRLLELAKRCKKLKAFVHVSTAYVNGD 149

SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEP 93
           IL+ G  GFIG  L  +L+  + +EV ++       ++  R          ++  D+ + 
Sbjct: 1   ILILGATGFIGRALARELL-EQGHEVTLLV------RNTKRLSKEDQEPVAVVEGDLRDL 53

Query: 94  LLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147
             +      VD + HLA   +P   +       + +V GT N+L  AK  G    +  S+
Sbjct: 54  DSLSDAVQGVDVVIHLA--GAPRDTRDF----CEVDVEGTRNVLEAAKEAGVKHFIFISS 107

Query: 148 SEVYGDP 154
              YGD 
Sbjct: 108 LGAYGDL 114

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 35/211 (16%)

Query: 35  ILVTGGAGFIGSHLVDKLMEN-----------EKNEVIVVDNYFTGSKDNLRKW---IGH 80
           +L+TG  GF+G++L+++L+               +E   ++      +   R W   +  
Sbjct: 2   VLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSY-RLWHEDLAR 60

Query: 81  PRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL 129
            R E++  D++EP L             VD I H     +   Y Y+ ++    NV+GT 
Sbjct: 61  ERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVN-WVYPYSELR--GANVLGTR 117

Query: 130 NMLGLAKRVGARIL-LTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF 188
            +L LA    A+ L   ST  V     +    E       P G+   Y + K VAE L+ 
Sbjct: 118 EVLRLAASGRAKPLHYVSTISVGAAIDLSTVTEDDATVTPPPGLAGGYAQSKWVAELLV- 176

Query: 189 DYHRQHGIEIRIAR----IFNTYGPRMNIDD 215
                 G+ + I R    + N+Y   +N  D
Sbjct: 177 REASDRGLPVTIVRPGRILGNSYTGAINSSD 207

This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
          M+ILVTG  GF+G  +V +L+   +   +    
Sbjct: 1  MKILVTGATGFVGGAVVRELL--ARGHEVRAAV 31

Length = 275

>gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR)

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 33/124 (26%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           +LVTGG+G IG  +   L      +V+VV                  R +++ H+     
Sbjct: 1   VLVTGGSGGIGGAIARWLASRGSPKVLVVS-----------------RRDVVVHNAAILD 43

Query: 95  LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK-----RVGARILLTSTSE 149
              +  +                 + I+ NV+GT  +L  A+     +   R +L S+  
Sbjct: 44  DGRLIDL-----------TGSRIERAIRANVVGTRRLLEAARELMKAKRLGRFILISSVA 92

Query: 150 VYGD 153
               
Sbjct: 93  GLFG 96

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186

>gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 17/187 (9%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEP 93
           + VTG  G+I S +V  L+E        V N       +LR+   G  R  L + D+ + 
Sbjct: 13  VCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDY 72

Query: 94  LLIEV-----DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147
             ++      D ++H A P +      +P + ++  V G   ++  A      R+++TS+
Sbjct: 73  EALKAAIDGCDGVFHTASPVTD-----DPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127

Query: 148 -SEVYGDPLVHPQ---DESYWGNVNPI-GVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
              VY DP   P+   DES W +++     ++ Y  GK VAE   ++  ++ G+++ +  
Sbjct: 128 IGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEKGVDLVVLN 187

Query: 203 IFNTYGP 209
                GP
Sbjct: 188 PVLVLGP 194

Length = 342

>gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 45/238 (18%), Positives = 75/238 (31%), Gaps = 64/238 (26%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTG  G +G  L   L   E+   +V               +  P  +L   +    L
Sbjct: 1   ILVTGANGQLGRELTRLL--AERGVEVVA--------------LDRPELDLTDPEAVAAL 44

Query: 95  LIEV--DQIYHLACPASPIFY------KYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
           + E   D + + A       Y      +  P      N +G  N+       GA ++  S
Sbjct: 45  VREARPDVVVNAA------AYTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHIS 98

Query: 147 TSEVY-GDPLV--HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
           T  V+ G         D        P+ V   Y   K   E  +   + +H I +R A +
Sbjct: 99  TDYVFDGAKGGPYREDDP-----TGPLNV---YGRTKLAGEQAVLAANPRHLI-LRTAWV 149

Query: 204 FNTYG--------------PRMNIDDGRV--------VSNFIAQAIRGEPLTVQAPGT 239
           +  YG                + + D ++        +++ +   IR         GT
Sbjct: 150 YGEYGNNFVKTMLRLAAERDELRVVDDQLGSPTSARDLADALLALIRKRLRGPALAGT 207

L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284

>gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP- 93
           +LVTG  G++G  LV +L++ E ++V         S + L       R  ++R D+ +P 
Sbjct: 1   VLVTGATGYVGGRLVPRLLQ-EGHQVRA----LVRSPEKLADRPWSERVTVVRGDLEDPE 55

Query: 94  ----LLIEVDQIYHL 104
                L  +D  Y+L
Sbjct: 56  SLRAALEGIDTAYYL 70

This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 43/199 (21%), Positives = 92/199 (46%), Gaps = 34/199 (17%)

Query: 35  ILVTGGAGFIGSHLVDKLM--------------ENEKNEVIVVDNYFTGSKDNLRKWIGH 80
           + VTG +G+I S +V  L+              + +K E ++      G+K+ L+ +   
Sbjct: 8   VCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLA---LDGAKERLKLF--- 61

Query: 81  PRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT--IKTNVIGTLNMLGLAKRV 138
            + +L+     E  +   D ++H    ASP+F+     +T  I   + GT+N+L   K  
Sbjct: 62  -KADLLEESSFEQAIEGCDAVFH---TASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117

Query: 139 GA--RILLTSTSE--VYGDPLVHPQ---DESYWGNVNPI-GVRSCYDEGKRVAETLMFDY 190
            +  R++LTS++   ++  P +      DE+++ + +     ++ Y   K +AE   +++
Sbjct: 118 PSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEF 177

Query: 191 HRQHGIEIRIARIFNTYGP 209
            + +GI++ +       GP
Sbjct: 178 AKDNGIDMVVLNPGFICGP 196

Length = 322

>gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 52/234 (22%), Positives = 77/234 (32%), Gaps = 42/234 (17%)

Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL 95
            V G  G +GS +V KL              FT         +     EL   D+T    
Sbjct: 1   FVAGHRGLVGSAIVRKLEALG----------FT-------NLVLRTHKEL---DLTRQ-- 38

Query: 96  IEVDQIY---------HLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 144
            +V+  +           A     I     Y P   I+ N+    N++  A R G + LL
Sbjct: 39  ADVEAFFAKEKPTYVILAAAKVGGIHANMTY-PADFIRENLQIQTNVIDAAYRHGVKKLL 97

Query: 145 T-STSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
              +S +Y      P  E+      P      Y   K     +   Y  Q+G +      
Sbjct: 98  FLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGMP 157

Query: 204 FNTYGPRMN--IDDGRVVSNFIAQ----AIRGEPLTVQ-APGTQTRSFCYVSDM 250
            N YGP  N   ++  V+   I +       G P  V    G+  R F +V D+
Sbjct: 158 TNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDL 211

Length = 306

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 33 MRILVTGGAGFIGSHLVDKLMEN 55
          M++ VTG  GFIGS +V +L+  
Sbjct: 1  MKVFVTGATGFIGSAVVRELVAA 23

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
PLN02166	436	dTDP-glucose 4,6-dehydratase	100.0
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	100.0
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	100.0
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	100.0
PLN02206	442	UDP-glucuronate decarboxylase	100.0
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	100.0
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	100.0
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	100.0
PLN02572	442	UDP-sulfoquinovose synthase	100.0
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	100.0
PLN02427	386	UDP-apiose/xylose synthase	100.0
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	100.0
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	100.0
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	100.0
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	100.0
PLN02214	342	cinnamoyl-CoA reductase	100.0
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	100.0
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	100.0
PLN00198	338	anthocyanidin reductase; Provisional	100.0
PLN02260	668	probable rhamnose biosynthetic enzyme	100.0
PLN02695	370	GDP-D-mannose-3',5'-epimerase	100.0
PLN02653	340	GDP-mannose 4,6-dehydratase	100.0
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	100.0
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	100.0
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	100.0
PLN02896	353	cinnamyl-alcohol dehydrogenase	100.0
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	100.0
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	100.0
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	100.0
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	100.0
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.98
PLN02240	352	UDP-glucose 4-epimerase	99.98
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.98
PLN02650	351	dihydroflavonol-4-reductase	99.98
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.98
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.97
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.97
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.97
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.97
PLN02686	367	cinnamoyl-CoA reductase	99.97
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.97
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.97
PLN02996	491	fatty acyl-CoA reductase	99.97
PLN02583	297	cinnamoyl-CoA reductase	99.97
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.96
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.96
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.96
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.96
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.96
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.96
PLN00016	378	RNA-binding protein; Provisional	99.95
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	99.95
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.95
PLN02778	298	3,5-epimerase/4-reductase	99.94
PRK07201	657	short chain dehydrogenase; Provisional	99.94
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.94
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.94
CHL00194	317	ycf39 Ycf39; Provisional	99.94
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.93
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.93
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	99.92
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.92
PLN02503	605	fatty acyl-CoA reductase 2	99.91
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.9
PRK06482	276	short chain dehydrogenase; Provisional	99.9
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.9
PRK05865	854	hypothetical protein; Provisional	99.9
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.9
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.9
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.9
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.9
PRK05876	275	short chain dehydrogenase; Provisional	99.89
PRK07775	274	short chain dehydrogenase; Provisional	99.89
PRK09135	249	pteridine reductase; Provisional	99.89
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.89
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.89
PRK06180	277	short chain dehydrogenase; Provisional	99.89
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.89
PRK07890	258	short chain dehydrogenase; Provisional	99.89
PRK12827	249	short chain dehydrogenase; Provisional	99.89
PRK06194	287	hypothetical protein; Provisional	99.89
PRK06138	252	short chain dehydrogenase; Provisional	99.88
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK12320	699	hypothetical protein; Provisional	99.88
PRK07067	257	sorbitol dehydrogenase; Provisional	99.88
PRK06500	249	short chain dehydrogenase; Provisional	99.88
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.88
PRK06914	280	short chain dehydrogenase; Provisional	99.88
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK05717	255	oxidoreductase; Validated	99.88
PRK07774	250	short chain dehydrogenase; Provisional	99.88
PRK06128	300	oxidoreductase; Provisional	99.87
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	99.87
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.87
PLN03209	576	translocon at the inner envelope of chloroplast su	99.87
PRK08263	275	short chain dehydrogenase; Provisional	99.87
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.87
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.87
PRK05875	276	short chain dehydrogenase; Provisional	99.87
PRK06182	273	short chain dehydrogenase; Validated	99.87
PRK12829	264	short chain dehydrogenase; Provisional	99.87
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.87
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.87
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.87
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.87
PRK06701	290	short chain dehydrogenase; Provisional	99.87
PRK06398	258	aldose dehydrogenase; Validated	99.87
PRK12828	239	short chain dehydrogenase; Provisional	99.87
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.87
PRK07806	248	short chain dehydrogenase; Provisional	99.86
PLN02253	280	xanthoxin dehydrogenase	99.86
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.86
PRK06123	248	short chain dehydrogenase; Provisional	99.86
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.86
PRK12746	254	short chain dehydrogenase; Provisional	99.86
PRK06181	263	short chain dehydrogenase; Provisional	99.86
PRK07060	245	short chain dehydrogenase; Provisional	99.86
PRK07985	294	oxidoreductase; Provisional	99.86
PLN02260	668	probable rhamnose biosynthetic enzyme	99.86
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.86
PRK09242	257	tropinone reductase; Provisional	99.86
PRK09186	256	flagellin modification protein A; Provisional	99.86
PRK07074	257	short chain dehydrogenase; Provisional	99.86
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK06841	255	short chain dehydrogenase; Provisional	99.85
PRK08265	261	short chain dehydrogenase; Provisional	99.85
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK07063	260	short chain dehydrogenase; Provisional	99.85
PRK12939	250	short chain dehydrogenase; Provisional	99.85
PRK06114	254	short chain dehydrogenase; Provisional	99.85
PRK07825	273	short chain dehydrogenase; Provisional	99.85
PRK08628	258	short chain dehydrogenase; Provisional	99.85
PRK07856	252	short chain dehydrogenase; Provisional	99.85
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.85
PRK12743	256	oxidoreductase; Provisional	99.85
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.85
PRK10538	248	malonic semialdehyde reductase; Provisional	99.85
PRK06523	260	short chain dehydrogenase; Provisional	99.85
PRK07814	263	short chain dehydrogenase; Provisional	99.85
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.85
PRK08219	227	short chain dehydrogenase; Provisional	99.85
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.84
PRK12744	257	short chain dehydrogenase; Provisional	99.84
PRK08589	272	short chain dehydrogenase; Validated	99.84
PRK12937	245	short chain dehydrogenase; Provisional	99.84
PRK08324	681	short chain dehydrogenase; Validated	99.84
PRK08264	238	short chain dehydrogenase; Validated	99.84
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.84
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.84
PRK07478	254	short chain dehydrogenase; Provisional	99.84
PRK07024	257	short chain dehydrogenase; Provisional	99.84
PRK12742	237	oxidoreductase; Provisional	99.84
PRK05872	296	short chain dehydrogenase; Provisional	99.84
PRK07454	241	short chain dehydrogenase; Provisional	99.84
PRK09134	258	short chain dehydrogenase; Provisional	99.84
PRK05650	270	short chain dehydrogenase; Provisional	99.84
PRK07035	252	short chain dehydrogenase; Provisional	99.84
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.84
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.84
PRK08226	263	short chain dehydrogenase; Provisional	99.84
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.84
PRK06949	258	short chain dehydrogenase; Provisional	99.84
PRK08339	263	short chain dehydrogenase; Provisional	99.84
PRK07109	334	short chain dehydrogenase; Provisional	99.84
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	99.84
PRK06179	270	short chain dehydrogenase; Provisional	99.84
PRK12747	252	short chain dehydrogenase; Provisional	99.84
PRK06196	315	oxidoreductase; Provisional	99.83
PRK07326	237	short chain dehydrogenase; Provisional	99.83
PRK05867	253	short chain dehydrogenase; Provisional	99.83
PRK08643	256	acetoin reductase; Validated	99.83
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.83
PRK06057	255	short chain dehydrogenase; Provisional	99.83
PRK08703	239	short chain dehydrogenase; Provisional	99.83
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.83
PRK05993	277	short chain dehydrogenase; Provisional	99.83
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.83
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.83
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.83
PRK07041	230	short chain dehydrogenase; Provisional	99.83
PRK07069	251	short chain dehydrogenase; Validated	99.83
PRK07577	234	short chain dehydrogenase; Provisional	99.82
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.82
PRK05866	293	short chain dehydrogenase; Provisional	99.82
PRK06483	236	dihydromonapterin reductase; Provisional	99.82
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.82
PRK07677	252	short chain dehydrogenase; Provisional	99.82
PRK09291	257	short chain dehydrogenase; Provisional	99.82
PRK06172	253	short chain dehydrogenase; Provisional	99.82
PRK06139	330	short chain dehydrogenase; Provisional	99.82
PRK05854	313	short chain dehydrogenase; Provisional	99.82
PRK06197	306	short chain dehydrogenase; Provisional	99.82
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.82
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.82
PRK07831	262	short chain dehydrogenase; Provisional	99.82
PRK07904	253	short chain dehydrogenase; Provisional	99.82
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.82
PRK08251	248	short chain dehydrogenase; Provisional	99.82
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.82
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.82
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.82
PRK07576	264	short chain dehydrogenase; Provisional	99.81
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.81
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.81
PRK06198	260	short chain dehydrogenase; Provisional	99.81
PRK08017	256	oxidoreductase; Provisional	99.81
PRK07062	265	short chain dehydrogenase; Provisional	99.81
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.8
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.8
PRK09072	263	short chain dehydrogenase; Provisional	99.8
PRK06101	240	short chain dehydrogenase; Provisional	99.8
PRK08278	273	short chain dehydrogenase; Provisional	99.8
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.8
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.8
KOG2774	366	consensus NAD dependent epimerase [General functio	99.8
PRK05693	274	short chain dehydrogenase; Provisional	99.8
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.8
PRK08267	260	short chain dehydrogenase; Provisional	99.8
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.8
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	99.8
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.8
PRK07102	243	short chain dehydrogenase; Provisional	99.8
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.8
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.79
PRK06484	520	short chain dehydrogenase; Validated	99.79
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.79
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.79
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.79
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.79
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.78
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.78
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.78
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.78
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.78
PRK06940	275	short chain dehydrogenase; Provisional	99.78
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.78
PRK07832	272	short chain dehydrogenase; Provisional	99.78
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.78
PRK07791	286	short chain dehydrogenase; Provisional	99.78
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.78
PRK06924	251	short chain dehydrogenase; Provisional	99.77
PRK06125	259	short chain dehydrogenase; Provisional	99.77
PRK07023	243	short chain dehydrogenase; Provisional	99.77
PRK05855	582	short chain dehydrogenase; Validated	99.76
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.76
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.75
PRK07201	657	short chain dehydrogenase; Provisional	99.75
PRK07578	199	short chain dehydrogenase; Provisional	99.75
PLN02780	320	ketoreductase/ oxidoreductase	99.73
PRK12367	245	short chain dehydrogenase; Provisional	99.73
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	99.73
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.73
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.72
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.72
PRK06953	222	short chain dehydrogenase; Provisional	99.72
PRK05884	223	short chain dehydrogenase; Provisional	99.72
PRK08177	225	short chain dehydrogenase; Provisional	99.71
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.71
KOG0725	270	consensus Reductases with broad range of substrate	99.7
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	99.7
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.7
PRK08303	305	short chain dehydrogenase; Provisional	99.7
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.7
PRK05599	246	hypothetical protein; Provisional	99.69
PRK06484	520	short chain dehydrogenase; Validated	99.69
PRK08862	227	short chain dehydrogenase; Provisional	99.69
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.68
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.68
KOG1208	314	consensus Dehydrogenases with different specificit	99.67
COG2910	211	Putative NADH-flavin reductase [General function p	99.67
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.65
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.65
PLN00015	308	protochlorophyllide reductase	99.64
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.61
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.61
COG1028	251	FabG Dehydrogenases with different specificities (	99.6
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	99.56
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.55
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.55
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.54
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.54
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.53
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.53
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.47
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.45
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	99.44
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	99.43
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.41
KOG4288	283	consensus Predicted oxidoreductase [General functi	99.39
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	99.28
KOG3019	315	consensus Predicted nucleoside-diphosphate sugar e	99.27
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	99.22
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	99.16
PRK06720	169	hypothetical protein; Provisional	99.09
PTZ00325	321	malate dehydrogenase; Provisional	99.05
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	98.97
PRK08309	177	short chain dehydrogenase; Provisional	98.96
PLN00106	323	malate dehydrogenase	98.91
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	98.83
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	98.77
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	98.74
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.71
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.58
PRK09620	229	hypothetical protein; Provisional	98.56
PRK05086	312	malate dehydrogenase; Provisional	98.5
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.46
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.36
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.34
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.34
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.34
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	98.29
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.26
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.22
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.21
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	98.17
PRK14982	340	acyl-ACP reductase; Provisional	98.14
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	98.11
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	98.1
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.1
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.05
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	98.05
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.03
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	98.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.99
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.97
KOG2733	423	consensus Uncharacterized membrane protein [Functi	97.96
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.87
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.85
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.85
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.83
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.82
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	97.81
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.8
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	97.8
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.72
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.72
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.71
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.71
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.7
PRK06223	307	malate dehydrogenase; Reviewed	97.7
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.69
PRK05442	326	malate dehydrogenase; Provisional	97.66
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.66
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.65
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	97.64
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.64
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	97.64
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.63
PTZ00117	319	malate dehydrogenase; Provisional	97.61
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.61
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.58
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.58
PLN02602	350	lactate dehydrogenase	97.58
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.58
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	97.56
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.56
PLN02383	344	aspartate semialdehyde dehydrogenase	97.56
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	97.54
COG3268	382	Uncharacterized conserved protein [Function unknow	97.53
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.47
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.46
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.44
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	97.42
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.42
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.41
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.41
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.39
PRK04148	134	hypothetical protein; Provisional	97.35
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.35
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.34
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.31
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.31
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.31
PRK08328	231	hypothetical protein; Provisional	97.23
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.22
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	97.19
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.18
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.18
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.17
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.14
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	97.13
PRK09496	453	trkA potassium transporter peripheral membrane com	97.1
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.1
PRK08223	287	hypothetical protein; Validated	97.09
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	97.06
COG4982	866	3-oxoacyl-[acyl-carrier protein]	97.05
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.04
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	97.03
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	97.03
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	96.98
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.97
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.97
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	96.95
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.94
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.93
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.92
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.92
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.88
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.85
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.82
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.82
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	96.79
PRK07411	390	hypothetical protein; Validated	96.78
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.78
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.77
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.76
PRK09496	453	trkA potassium transporter peripheral membrane com	96.73
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.7
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.7
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.69
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.68
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.68
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.66
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.62
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.6
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.58
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	96.58
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.57
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.55
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.53
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	96.51
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	96.49
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.47
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	96.46
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.46
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.45
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.4
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	96.33
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.32
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	96.29
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.29
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.23
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.22
PRK08655	437	prephenate dehydrogenase; Provisional	96.2
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.2
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.19
COG2130	340	Putative NADP-dependent oxidoreductases [General f	96.18
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.18
PLN00203	519	glutamyl-tRNA reductase	96.14
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.14
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.13
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.13
PF08732	410	HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti	96.12
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.12
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.09
KOG4777	361	consensus Aspartate-semialdehyde dehydrogenase [Am	96.08
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.04
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.03
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.99
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.97
PRK14852	989	hypothetical protein; Provisional	95.95
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.94
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.91
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	95.88
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.88
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	95.82
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.8
PRK14851	679	hypothetical protein; Provisional	95.79
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	95.78
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	95.78
PRK07877	722	hypothetical protein; Provisional	95.77
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.71
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	95.71
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.71
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	95.7
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.63
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.62
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.61
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.61
KOG1496	332	consensus Malate dehydrogenase [Energy production	95.59
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	95.58
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	95.57
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.53
PRK07417	279	arogenate dehydrogenase; Reviewed	95.52
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	95.51
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.48
PRK06444	197	prephenate dehydrogenase; Provisional	95.46
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.44
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	95.42
PRK10669	558	putative cation:proton antiport protein; Provision	95.39
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	95.35
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	95.28
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.27
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.26
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.26
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.25
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.25
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.24
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.18
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	95.18
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.16
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.16
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.13
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	95.09
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.08
PRK06849	389	hypothetical protein; Provisional	95.07
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.06

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=100.00  E-value=1.4e-38  Score=270.78  Aligned_cols=227  Identities=75%  Similarity=1.218  Sum_probs=191.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~  110 (259)
                      ..|+|+|||||||||++|+++|+++|++ |++++|......+.........+++++.+|+.+....++|+|||+|+....
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~-V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~~~  197 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGDE-VIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASP  197 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEEECceeccc
Confidence            3589999999999999999999999998 999987543322222222223478899999988877889999999987654


Q ss_pred             cccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHH
Q 025022          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY  190 (259)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~  190 (259)
                      .....++...+++|+.++.+++++|++.+++|||+||..+|++....+.+|+.|...+|..+.+.|+.+|..+|++++.+
T Consensus       198 ~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y  277 (436)
T PLN02166        198 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDY  277 (436)
T ss_pred             hhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHHHHHHHHH
Confidence            34445678899999999999999999988899999999999987777888887665567777889999999999999999


Q ss_pred             HHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          191 HRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       191 ~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+..+++++++|++++|||+.....+.++..++..+..++++.+++++++.++|+|++|+++++..++
T Consensus       278 ~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~  345 (436)
T PLN02166        278 HRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALM  345 (436)
T ss_pred             HHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHH
Confidence            88889999999999999998654445578888888998999998999999999999999999998764

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=100.00  E-value=1.8e-38  Score=264.87  Aligned_cols=224  Identities=29%  Similarity=0.399  Sum_probs=184.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc------CCCceeEeecccCccc-----cCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI------GHPRFELIRHDVTEPL-----LIE   97 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~dl~~~~-----~~~   97 (259)
                      -+++|+|+|||||||||++|+++|+++|++ |++++|........+....      ...++.++.+|+.+..     +.+
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~   90 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQT-VIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN   90 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence            366799999999999999999999999998 9999885443222221111      1136788999999875     578


Q ss_pred             cCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCch
Q 025022           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY  176 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y  176 (259)
                      +|+|||+|+.........++...+++|+.++.+++++|++.++ +|||+||..+|+...+.+..|+.     +..|.+.|
T Consensus        91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~-----~~~p~~~Y  165 (348)
T PRK15181         91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEER-----IGRPLSPY  165 (348)
T ss_pred             CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCCC-----CCCCCChh
Confidence            9999999997654444566778899999999999999999998 99999999999976666666654     55677889


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHH
Q 025022          177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKS  254 (259)
Q Consensus       177 ~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~  254 (259)
                      +.+|..+|.+++.+.++++++++++||+++|||+.++..  ..+++.++..+..++++.+++++++.++|+|++|+|+++
T Consensus       166 ~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~  245 (348)
T PRK15181        166 AVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQAN  245 (348)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHH
Confidence            999999999999998888999999999999999865432  347888888888888899899999999999999999998


Q ss_pred             Hhhh
Q 025022          255 CFLA  258 (259)
Q Consensus       255 ~~~l  258 (259)
                      +.++
T Consensus       246 ~~~~  249 (348)
T PRK15181        246 LLSA  249 (348)
T ss_pred             HHHH
Confidence            7653

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.9e-38  Score=244.95  Aligned_cols=216  Identities=29%  Similarity=0.463  Sum_probs=186.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~a  105 (259)
                      |+||||||+||||+|.+.+|++.|++ |+++++......+.+...    ...++.+|+.|..       ..++|.|||.|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~-vvV~DNL~~g~~~~v~~~----~~~f~~gDi~D~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHE-VVVLDNLSNGHKIALLKL----QFKFYEGDLLDRALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCCHHHhhhc----cCceEEeccccHHHHHHHHHhcCCCEEEECc
Confidence            68999999999999999999999999 999998877766655432    2689999999988       45799999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE  184 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e  184 (259)
                      |......+-+++..+++.|+.++.+|+++|++.++ +|||.||+.+||.+...|++|+.     |..|.++||.||.+.|
T Consensus        76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~-----~~~p~NPYG~sKlm~E  150 (329)
T COG1087          76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETS-----PLAPINPYGRSKLMSE  150 (329)
T ss_pred             cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCC-----CCCCCCcchhHHHHHH
Confidence            98876666678999999999999999999999999 99999999999999999999998     8889999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEeccccCCCCC------CC-CccHHHHHHHHHHcC-CCeEEec------CCceeeeeeeHHHH
Q 025022          185 TLMFDYHRQHGIEIRIARIFNTYGPRMN------ID-DGRVVSNFIAQAIRG-EPLTVQA------PGTQTRSFCYVSDM  250 (259)
Q Consensus       185 ~~~~~~~~~~~~~~~~lr~~~v~g~~~~------~~-~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~i~v~D~  250 (259)
                      ++++.+++.++++++++|-+|+.|....      +. .+..++..++.++.. ..+.++|      +|...||||||.|+
T Consensus       151 ~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DL  230 (329)
T COG1087         151 EILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDL  230 (329)
T ss_pred             HHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHH
Confidence            9999999999999999999999985421      11 134677777766644 3477776      67789999999999


Q ss_pred             HHHHHhhh
Q 025022          251 VCKSCFLA  258 (259)
Q Consensus       251 a~~~~~~l  258 (259)
                      |++++.++
T Consensus       231 A~aH~~Al  238 (329)
T COG1087         231 ADAHVLAL  238 (329)
T ss_pred             HHHHHHHH
Confidence            99998765

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=3.3e-38  Score=243.52  Aligned_cols=219  Identities=32%  Similarity=0.488  Sum_probs=195.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCC-CCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~  103 (259)
                      |++|||||+||||+++++.++++... .|+.++... ..+.+.++.....++..++++|++|.+     +.  ++|+|+|
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            68999999999999999999999764 267777643 345566777777789999999999987     33  6999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCC--CCCCCCcCCCCCCCCCCchHHH
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVH--PQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~--~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      .|+.++.+..-.+++.++++|+.|+.+|++++++...  ||+|+||..|||+-...  .++|++     |..|.++|++|
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~t-----p~~PsSPYSAS  155 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETT-----PYNPSSPYSAS  155 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCC-----CCCCCCCcchh
Confidence            9999998888899999999999999999999999985  99999999999986543  577776     99999999999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |++++.+++.+.+.+|++++|.|+++-|||...+.  .+++.++..++.|.+++++|+|.+.|||+||+|-|+|+..++
T Consensus       156 KAasD~lVray~~TYglp~~ItrcSNNYGPyqfpE--KlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl  232 (340)
T COG1088         156 KAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPE--KLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVL  232 (340)
T ss_pred             hhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCch--hhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHH
Confidence            99999999999999999999999999999997654  499999999999999999999999999999999999998765

>PLN02206 UDP-glucuronate decarboxylase

Probab=100.00  E-value=8.1e-38  Score=266.45  Aligned_cols=227  Identities=74%  Similarity=1.194  Sum_probs=190.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~  110 (259)
                      ++|+|||||||||||++|++.|+++|++ |+++++......+.........+++++.+|+.+..+.++|+|||+|+....
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~~~~  196 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLACPASP  196 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEeeeecch
Confidence            4589999999999999999999999998 888876533222222222334578899999988887889999999997654


Q ss_pred             cccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHH
Q 025022          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY  190 (259)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~  190 (259)
                      ..+..++...+++|+.++.+++++|++.+++|||+||..+|+.....+.+|+.|...+|..+.+.|+.+|.++|+++..+
T Consensus       197 ~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y  276 (442)
T PLN02206        197 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDY  276 (442)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHHHHHHHHHH
Confidence            44455778899999999999999999998899999999999977667788887665556667789999999999999999


Q ss_pred             HHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          191 HRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       191 ~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+..+++++++|++++|||+.....+.++..++..+..++++.+++++++.++|+|++|+|++++.++
T Consensus       277 ~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~  344 (442)
T PLN02206        277 HRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLM  344 (442)
T ss_pred             HHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHH
Confidence            88889999999999999998654344577888888888888888999999999999999999998764

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3.3e-38  Score=241.57  Aligned_cols=228  Identities=79%  Similarity=1.253  Sum_probs=215.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~  109 (259)
                      ..+++|+||||.||||+||++.|..+|+. |++++.......+.+......+.++.+..|....-+..+|.|+|+|++.+
T Consensus        25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~-VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD~IyhLAapas  103 (350)
T KOG1429|consen   25 SQNLRILITGGAGFIGSHLVDKLMTEGHE-VIALDNYFTGRKENLEHWIGHPNFELIRHDVVEPLLKEVDQIYHLAAPAS  103 (350)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHhcCCe-EEEEecccccchhhcchhccCcceeEEEeechhHHHHHhhhhhhhccCCC
Confidence            45689999999999999999999999988 99999888777777777777889999999999998999999999999999


Q ss_pred             ccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHH
Q 025022          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD  189 (259)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~  189 (259)
                      +..+..++-..+..|+.++.+++-.|++.+.||+++||+.|||++...|..|+.|....|..|...|+..|..+|.++..
T Consensus       104 p~~y~~npvktIktN~igtln~lglakrv~aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegKr~aE~L~~~  183 (350)
T KOG1429|consen  104 PPHYKYNPVKTIKTNVIGTLNMLGLAKRVGARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKRVAETLCYA  183 (350)
T ss_pred             CcccccCccceeeecchhhHHHHHHHHHhCceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          190 YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       190 ~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +.++.|+.+.|.|+.+.|||......++.+..++...+++.++.++|+|.+.++|.+++|+++++++++
T Consensus       184 y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm  252 (350)
T KOG1429|consen  184 YHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLM  252 (350)
T ss_pred             hhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHh
Confidence            999999999999999999999888778899999999999999999999999999999999999999875

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=100.00  E-value=2.2e-35  Score=233.73  Aligned_cols=214  Identities=35%  Similarity=0.523  Sum_probs=183.8

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEccCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLACP  107 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~a~~  107 (259)
                      |||||||||||++++++|+++|+. |+.+.|+..........    .++.++.+|+.+.+       ..++|+|||+|+.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHE-VIVLSRSSNSESFEEKK----LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTE-EEEEESCSTGGHHHHHH----TTEEEEESETTSHHHHHHHHHHHTESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCc-ccccccccccccccccc----ceEEEEEeeccccccccccccccCceEEEEeecc
Confidence            799999999999999999999999 88888765544322222    17899999999877       2357999999997


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL  186 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~  186 (259)
                      ........+....++.|+.++.+++++|++.++ ++|++||..+|+.....+++|++     +..|.+.|+.+|...|++
T Consensus        76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~-----~~~~~~~Y~~~K~~~e~~  150 (236)
T PF01370_consen   76 SSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDS-----PINPLSPYGASKRAAEEL  150 (236)
T ss_dssp             SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTS-----GCCHSSHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccc
Confidence            643233467888999999999999999999999 99999999999988777888887     668888999999999999


Q ss_pred             HHHHHHHhCCcEEEEEeccccCCC-CCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          187 MFDYHRQHGIEIRIARIFNTYGPR-MNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       187 ~~~~~~~~~~~~~~lr~~~v~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ++.+.++++++++++||+++|||. .......+++.++..+..++++.+++++++.++|+|++|+|++++.++
T Consensus       151 ~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~  223 (236)
T PF01370_consen  151 LRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAAL  223 (236)
T ss_dssp             HHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHH
Confidence            999999889999999999999999 222345689999999999999999999999999999999999999875

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=100.00  E-value=7.6e-35  Score=243.26  Aligned_cols=222  Identities=27%  Similarity=0.441  Sum_probs=177.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccC-ccc-----cCCcCEEEEc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EPL-----LIEVDQIYHL  104 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~-~~~-----~~~~d~vi~~  104 (259)
                      +|+|+|||||||||++|+++|+++ |++ |++++|+...    ........+++++.+|+. +..     ..++|+|||+
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~-V~~~~r~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~   75 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWE-VYGMDMQTDR----LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL   75 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCe-EEEEeCcHHH----HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence            478999999999999999999987 677 9999875322    122222346889999997 433     4689999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcC-CCCC-CCCCCchHHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNP-IGVRSCYDEGKRV  182 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~-~~~~-~~~~~~Y~~sK~~  182 (259)
                      |+...+.....++...+++|+.++.+++++|++.+.+|||+||..+|+.....+.+|+... ...+ ..|.+.|+.+|.+
T Consensus        76 aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~  155 (347)
T PRK11908         76 VAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQL  155 (347)
T ss_pred             cccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHHHH
Confidence            9976544445678888999999999999999988779999999999987555556665421 1112 2456789999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEeccccCCCCCCC------CccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHh
Q 025022          183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNID------DGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCF  256 (259)
Q Consensus       183 ~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  256 (259)
                      +|+.++.++..++++++++||+++|||+..+.      ...++..++..+..+.++.+++++++.++|+|++|++++++.
T Consensus       156 ~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~  235 (347)
T PRK11908        156 MDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMK  235 (347)
T ss_pred             HHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHH
Confidence            99999999888899999999999999985421      234778888888888888888888999999999999999987


Q ss_pred             hh
Q 025022          257 LA  258 (259)
Q Consensus       257 ~l  258 (259)
                      ++
T Consensus       236 ~~  237 (347)
T PRK11908        236 II  237 (347)
T ss_pred             HH
Confidence            65

>PLN02572 UDP-sulfoquinovose synthase

Probab=100.00  E-value=1.7e-34  Score=246.71  Aligned_cols=230  Identities=27%  Similarity=0.317  Sum_probs=173.7

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------chhhhc--cCCCceeEeec
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------DNLRKW--IGHPRFELIRH   88 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------~~~~~~--~~~~~~~~~~~   88 (259)
                      ....++|+||||||+||||++|+++|+++|++ |+++++......                +.++..  ....+++++.+
T Consensus        42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~  120 (442)
T PLN02572         42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGYE-VAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVG  120 (442)
T ss_pred             CccccCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEEC
Confidence            34456799999999999999999999999998 888764321110                011100  01136889999


Q ss_pred             ccCccc-----cC--CcCEEEEccCCCCcccccc---ChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCC
Q 025022           89 DVTEPL-----LI--EVDQIYHLACPASPIFYKY---NPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLV  156 (259)
Q Consensus        89 dl~~~~-----~~--~~d~vi~~a~~~~~~~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~  156 (259)
                      |+.+.+     +.  ++|+|||+|+.........   +.+..+++|+.++.+++++|++.++  +||++||..+||... 
T Consensus       121 Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-  199 (442)
T PLN02572        121 DICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-  199 (442)
T ss_pred             CCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-
Confidence            999876     22  6899999997654322222   2345678999999999999999886  899999999998643 


Q ss_pred             CCCCCCCcC-------CC--CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-------------
Q 025022          157 HPQDESYWG-------NV--NPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID-------------  214 (259)
Q Consensus       157 ~~~~e~~~~-------~~--~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~-------------  214 (259)
                      .+.+|....       +.  .+..|.+.|+.+|.++|.+++.++..++++++++||+++|||+....             
T Consensus       200 ~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~  279 (442)
T PLN02572        200 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYD  279 (442)
T ss_pred             CCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcc
Confidence            233332110       00  14567789999999999999999998999999999999999986431             


Q ss_pred             --CccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          215 --DGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       215 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                        ....+..++..+..++++.++|+|++.++|+|++|+|++++.++
T Consensus       280 ~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al  325 (442)
T PLN02572        280 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAI  325 (442)
T ss_pred             cchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHH
Confidence              02356677778888888888999999999999999999998765

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=100.00  E-value=3.9e-35  Score=233.42  Aligned_cols=222  Identities=23%  Similarity=0.302  Sum_probs=173.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc--hhhhccC-CCceeEeecccCccc-----cCCcCEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NLRKWIG-HPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      .+++|+|||||||||+||++.|+++||+ |++..|++.....  .+..+.. ..++..+.+|+.+++     ..+||.||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~-V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf   83 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYT-VRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF   83 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCE-EEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence            5789999999999999999999999999 9999998765322  2333322 346999999999999     78999999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecC-----CCCCCCCCCCcCCCCCC-CCCC
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGD-----PLVHPQDESYWGNVNPI-GVRS  174 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~-----~~~~~~~e~~~~~~~~~-~~~~  174 (259)
                      |+|.+....... ...+.++..++|+.+++++|++.. + |+|++||.++...     .....++|+.|++.+-. ....
T Consensus        84 H~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~  162 (327)
T KOG1502|consen   84 HTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKL  162 (327)
T ss_pred             EeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHH
Confidence            999987653322 344899999999999999999998 5 9999999865432     23567889988865532 2237


Q ss_pred             chHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKS  254 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~  254 (259)
                      +|..+|..+|+..++++++.+++.+.+.|+.|+||...+... ..........+|..-. +.  +....|+|++|||.|+
T Consensus       163 ~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~-~s~~~~l~~i~G~~~~-~~--n~~~~~VdVrDVA~AH  238 (327)
T KOG1502|consen  163 WYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLN-SSLNALLKLIKGLAET-YP--NFWLAFVDVRDVALAH  238 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccc-hhHHHHHHHHhccccc-CC--CCceeeEeHHHHHHHH
Confidence            899999999999999999999999999999999999876322 3333344445554222 22  3344599999999999


Q ss_pred             Hhhh
Q 025022          255 CFLA  258 (259)
Q Consensus       255 ~~~l  258 (259)
                      ++++
T Consensus       239 v~a~  242 (327)
T KOG1502|consen  239 VLAL  242 (327)
T ss_pred             HHHH
Confidence            9874

>PLN02427 UDP-apiose/xylose synthase

Probab=100.00  E-value=3.5e-34  Score=242.43  Aligned_cols=227  Identities=29%  Similarity=0.419  Sum_probs=171.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhc--cCCCceeEeecccCccc-----cCCcCEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      +.|+|||||||||||++|+++|+++ |++ |++++|+...........  ....+++++.+|+.+..     +.++|+||
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~-V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi   91 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPHK-VLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTI   91 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCCE-EEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence            3579999999999999999999998 476 999987543221111100  01236899999999876     56799999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCC-----------CCC--
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-----------VNP--  169 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~-----------~~~--  169 (259)
                      |+|+......+..++.+.+..|+.++.+++++|++.+.+|||+||..+|+.....+.+|+.+..           ..+  
T Consensus        92 HlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~~~~  171 (386)
T PLN02427         92 NLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCI  171 (386)
T ss_pred             EcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCCCcCCCCCcccccccccccccccccccccc
Confidence            9999755433344556677889999999999998877799999999999865433333332110           000  


Q ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC---------CccHHHHHHHHHHcCCCeEEec
Q 025022          170 ----IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID---------DGRVVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       170 ----~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  236 (259)
                          ..+.+.|+.+|.++|++++.++..++++++++||+++|||+....         ...++..++..+..++++.+++
T Consensus       172 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g  251 (386)
T PLN02427        172 FGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLKLVD  251 (386)
T ss_pred             cCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCCCeEEEC
Confidence                123467999999999999998888899999999999999975311         1235666677777888888888


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ++++.++|+|++|+|++++.++
T Consensus       252 ~g~~~r~~i~V~Dva~ai~~al  273 (386)
T PLN02427        252 GGQSQRTFVYIKDAIEAVLLMI  273 (386)
T ss_pred             CCCceECcEeHHHHHHHHHHHH
Confidence            8888999999999999998765

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=100.00  E-value=6.7e-34  Score=238.36  Aligned_cols=220  Identities=31%  Similarity=0.427  Sum_probs=173.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccCCCceeEeecccCccc-----cC--CcCEEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYH  103 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~  103 (259)
                      +++|+|||||||||+++++.|+++|+.+|+++++..... ...+.......++.++.+|+.+.+     +.  ++|+|||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH   80 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence            368999999999999999999999988444555432211 111111111236788899999876     22  5999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh---------CC-eEEEEecceeecCCC--CCCCCCCCcCCCCCCC
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTSEVYGDPL--VHPQDESYWGNVNPIG  171 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~-~~i~~Ss~~~~~~~~--~~~~~e~~~~~~~~~~  171 (259)
                      +||..........+...+++|+.++.+++++|.+.         ++ +||++||..+|+...  ..+++|+.     +..
T Consensus        81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~-----~~~  155 (355)
T PRK10217         81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETT-----PYA  155 (355)
T ss_pred             CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCC-----CCC
Confidence            99976543334567889999999999999999863         44 999999999998642  34567765     667


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHH
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV  251 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  251 (259)
                      |.+.|+.||.++|.+++.++++.+++++++||+++|||+..+  ..+++.++.....+.++++++++++.++|+|++|+|
T Consensus       156 p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~--~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a  233 (355)
T PRK10217        156 PSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFP--EKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHA  233 (355)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCc--ccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHH
Confidence            788999999999999999988889999999999999998643  347777878788888888889999999999999999


Q ss_pred             HHHHhhh
Q 025022          252 CKSCFLA  258 (259)
Q Consensus       252 ~~~~~~l  258 (259)
                      ++++.++
T Consensus       234 ~a~~~~~  240 (355)
T PRK10217        234 RALYCVA  240 (355)
T ss_pred             HHHHHHH
Confidence            9998764

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=100.00  E-value=6.2e-34  Score=254.86  Aligned_cols=224  Identities=27%  Similarity=0.484  Sum_probs=181.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIY  102 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi  102 (259)
                      ..+|+|+|||||||||++|+++|+++ |++ |++++|......    ......+++++.+|+++..      +.++|+||
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~-V~~l~r~~~~~~----~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~Vi  387 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNYE-VYGLDIGSDAIS----RFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVL  387 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCcE-EEEEeCCchhhh----hhcCCCceEEEeccccCcHHHHHHHhcCCCEEE
Confidence            35789999999999999999999986 688 999998653221    1122347889999998743      56899999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCC-CCCC-CCCCchHHHH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNPI-GVRSCYDEGK  180 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~-~~~~-~~~~~Y~~sK  180 (259)
                      |+|+......+..++...+++|+.++.+++++|++.+.+|||+||..+|+.....+++|+.+.. ..+. .|.+.|+.+|
T Consensus       388 HlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK  467 (660)
T PRK08125        388 PLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSK  467 (660)
T ss_pred             ECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHHHH
Confidence            9999766544455677889999999999999999987799999999999976556677775321 1122 3556899999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC------CccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHH
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID------DGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKS  254 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~  254 (259)
                      .++|.+++.+++.++++++++||+++|||+....      ....++.++..+..++++.+++++++.++|+|++|+|+++
T Consensus       468 ~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~  547 (660)
T PRK08125        468 QLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEAL  547 (660)
T ss_pred             HHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHH
Confidence            9999999999888899999999999999985321      1346788888888888888888899999999999999999


Q ss_pred             Hhhh
Q 025022          255 CFLA  258 (259)
Q Consensus       255 ~~~l  258 (259)
                      +.++
T Consensus       548 ~~~l  551 (660)
T PRK08125        548 FRII  551 (660)
T ss_pred             HHHH
Confidence            8764

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=100.00  E-value=3e-34  Score=231.14  Aligned_cols=212  Identities=31%  Similarity=0.410  Sum_probs=164.6

Q ss_pred             EEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccCCC
Q 025022           36 LVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPA  108 (259)
Q Consensus        36 lItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~~~  108 (259)
                      |||||+||||++|+++|+++|  +. |.++++........  ........+++.+|+++.+     +.++|+|||+|++.
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~-Vr~~d~~~~~~~~~--~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~   77 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYE-VRVLDRSPPPKFLK--DLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPV   77 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceE-EEEcccccccccch--hhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccc
Confidence            699999999999999999999  55 88888765443311  1111234449999999987     78999999999976


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCC-CCCC---CCCCcCCCCCCCCCCchHHHHHHH
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-VHPQ---DESYWGNVNPIGVRSCYDEGKRVA  183 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~-~~~~---~e~~~~~~~~~~~~~~Y~~sK~~~  183 (259)
                      ... .....+.++++|+.|+++++++|++.++ +|||+||.+++++.. ..++   +|+.+   .+..+...|+.||..+
T Consensus        78 ~~~-~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~---~~~~~~~~Y~~SK~~A  153 (280)
T PF01073_consen   78 PPW-GDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTP---YPSSPLDPYAESKALA  153 (280)
T ss_pred             ccc-CcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCc---ccccccCchHHHHHHH
Confidence            542 2356778999999999999999999999 999999999887622 2222   34321   1334667899999999


Q ss_pred             HHHHHHHHH---H--hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          184 ETLMFDYHR---Q--HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       184 e~~~~~~~~---~--~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |+++++...   +  ..+.+++|||+.||||+..    .+.+.+...+..+......++++...+++|++|+|.+++.++
T Consensus       154 E~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~----~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~  229 (280)
T PF01073_consen  154 EKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQ----RLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAA  229 (280)
T ss_pred             HHHHHhhcccccccccceeEEEEeccEEeCcccc----cccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHH
Confidence            999998765   2  2489999999999999853    245566666777766677788888999999999999998763

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=100.00  E-value=1.3e-33  Score=235.96  Aligned_cols=221  Identities=24%  Similarity=0.287  Sum_probs=175.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----c--CCcCEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L--IEVDQIY  102 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~--~~~d~vi  102 (259)
                      +++|+|+||||+||||+++++.|+++|++ |++++|+...............++.++.+|+.+.+     .  .++|+||
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi   80 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAE-VYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF   80 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCE-EEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence            45789999999999999999999999998 98888865433222111111235778899999877     2  2579999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCC-CCCCCCCCcCCCCCCCCCCchHHH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL-VHPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~-~~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      |+||.........++...+++|+.++.+++++|++.+ + +||++||..+|+... ..+.+|+.     +..|.+.|+.+
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~-----~~~p~~~Y~~s  155 (349)
T TIGR02622        81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETD-----PLGGHDPYSSS  155 (349)
T ss_pred             ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCC-----CCCCCCcchhH
Confidence            9999654444456778899999999999999998877 5 999999999998643 23455654     56677899999


Q ss_pred             HHHHHHHHHHHHHHh-------CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHH
Q 025022          180 KRVAETLMFDYHRQH-------GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       180 K~~~e~~~~~~~~~~-------~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      |.+.|.+++.++.++       +++++++||+++|||+... ...+++.++..+..+.++.+ +++++.++|+|++|+|+
T Consensus       156 K~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~-~~~~~~~~~~~~~~g~~~~~-~~g~~~rd~i~v~D~a~  233 (349)
T TIGR02622       156 KACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWA-EDRLIPDVIRAFSSNKIVII-RNPDATRPWQHVLEPLS  233 (349)
T ss_pred             HHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcch-hhhhhHHHHHHHhcCCCeEE-CCCCcccceeeHHHHHH
Confidence            999999999887654       8999999999999997421 23578888888888887775 56789999999999999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      +++.++
T Consensus       234 a~~~~~  239 (349)
T TIGR02622       234 GYLLLA  239 (349)
T ss_pred             HHHHHH
Confidence            988653

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02214 cinnamoyl-CoA reductase

Probab=100.00  E-value=4.1e-33  Score=231.91  Aligned_cols=219  Identities=23%  Similarity=0.368  Sum_probs=166.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcch-hhhccC-CCceeEeecccCccc-----cCCcCEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWIG-HPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-~~~~~~-~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      .++|+|+||||+||||++++++|+++|+. |+++.|+....... +..... ..+++++.+|+.+..     +.++|+||
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYT-VKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            35789999999999999999999999998 99988864432111 111111 135888999999876     56899999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecc-eeecCCCC---CCCCCCCcCCCC-CCCCCCch
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS-EVYGDPLV---HPQDESYWGNVN-PIGVRSCY  176 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~-~~~~~~~~---~~~~e~~~~~~~-~~~~~~~Y  176 (259)
                      |+|+...     .++...+++|+.++.+++++|++.++ +|||+||. .+|+....   .+++|+.|.+.+ +..+.+.|
T Consensus        87 h~A~~~~-----~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y  161 (342)
T PLN02214         87 HTASPVT-----DDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY  161 (342)
T ss_pred             EecCCCC-----CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHH
Confidence            9998642     35678899999999999999999988 99999996 58875332   347887765433 34567889


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHh
Q 025022          177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCF  256 (259)
Q Consensus       177 ~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  256 (259)
                      +.+|..+|++++.++++++++++++||+++|||+..+.....+..++. ...+.... ++  +..++|||++|+|++++.
T Consensus       162 ~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~-~~~g~~~~-~~--~~~~~~i~V~Dva~a~~~  237 (342)
T PLN02214        162 CYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLK-YLTGSAKT-YA--NLTQAYVDVRDVALAHVL  237 (342)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHH-HHcCCccc-CC--CCCcCeeEHHHHHHHHHH
Confidence            999999999999998888999999999999999865432222333332 33444322 33  457899999999999988


Q ss_pred             hh
Q 025022          257 LA  258 (259)
Q Consensus       257 ~l  258 (259)
                      ++
T Consensus       238 al  239 (342)
T PLN02214        238 VY  239 (342)
T ss_pred             HH
Confidence            75

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=100.00  E-value=5.7e-33  Score=231.62  Aligned_cols=220  Identities=24%  Similarity=0.258  Sum_probs=172.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC-Ccchhhhcc------CCCceeEeecccCccc-----cC--Cc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWI------GHPRFELIRHDVTEPL-----LI--EV   98 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~------~~~~~~~~~~dl~~~~-----~~--~~   98 (259)
                      |+||||||+||||++|+++|+++|++ |++++|+... ..+.+....      ...+++++.+|+++.+     +.  ++
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~   79 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYE-VHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKP   79 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCE-EEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCC
Confidence            58999999999999999999999998 9998886532 111222111      0236889999999876     23  57


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC----eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS  174 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (259)
                      |+|||+|+.........++...+++|+.++.+++++|++.++    +|||+||..+||.....+.+|+.     +..|.+
T Consensus        80 d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-----~~~p~~  154 (343)
T TIGR01472        80 TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETT-----PFYPRS  154 (343)
T ss_pred             CEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCC-----CCCCCC
Confidence            999999997654333445677788999999999999998763    79999999999976666677775     677888


Q ss_pred             chHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCC-eEEecCCceeeeeeeHHHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID-DGRVVSNFIAQAIRGEP-LTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      .|+.||.++|.+++.+++++++++++.|+.++|||+.... ....+..++..+..+++ ...+|++++.++|+|++|+|+
T Consensus       155 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~  234 (343)
T TIGR01472       155 PYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVE  234 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHH
Confidence            9999999999999999988899999999999999974321 12344555556666653 345688899999999999999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      +++.++
T Consensus       235 a~~~~~  240 (343)
T TIGR01472       235 AMWLML  240 (343)
T ss_pred             HHHHHH
Confidence            998765

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=100.00  E-value=8.9e-33  Score=231.32  Aligned_cols=219  Identities=30%  Similarity=0.433  Sum_probs=171.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC-CCcchhhhccCCCceeEeecccCccc-----c--CCcCEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPL-----L--IEVDQIYHL  104 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~dl~~~~-----~--~~~d~vi~~  104 (259)
                      |+|+||||+||||++|+++|+++|+..|+++++... .............++.++.+|+++.+     +  .++|+|||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL   80 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence            589999999999999999999999874666655321 11122222111245788999999876     2  358999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHh---------CC-eEEEEecceeecCCCC----------CCCCCCCc
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTSEVYGDPLV----------HPQDESYW  164 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~-~~i~~Ss~~~~~~~~~----------~~~~e~~~  164 (259)
                      |+.........+++..+++|+.++.+++++|++.         ++ +|||+||..+|+....          .+++|+. 
T Consensus        81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~-  159 (352)
T PRK10084         81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETT-  159 (352)
T ss_pred             CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccC-
Confidence            9976543334567889999999999999999874         34 8999999999986321          1244543 


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                          +..|.+.|+.+|.++|.+++.+++.++++++++|++++|||+...  ..++..++..+..+.++.++++++..++|
T Consensus       160 ----~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  233 (352)
T PRK10084        160 ----AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNALEGKPLPIYGKGDQIRDW  233 (352)
T ss_pred             ----CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCc--cchHHHHHHHHhcCCCeEEeCCCCeEEee
Confidence                667888999999999999999988889999999999999998532  34677788888888888888889999999


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      +|++|+|+++..++
T Consensus       234 v~v~D~a~a~~~~l  247 (352)
T PRK10084        234 LYVEDHARALYKVV  247 (352)
T ss_pred             EEHHHHHHHHHHHH
Confidence            99999999998764

>PLN00198 anthocyanidin reductase; Provisional

Probab=100.00  E-value=8.8e-33  Score=230.06  Aligned_cols=226  Identities=22%  Similarity=0.292  Sum_probs=164.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcch--hhhccCCCceeEeecccCccc-----cCCcCEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN--LRKWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      ++++|+|+||||+||||++|+++|+++|++ |+++.|+.......  +..+....+++++.+|+++.+     ++++|+|
T Consensus         6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   84 (338)
T PLN00198          6 PTGKKTACVIGGTGFLASLLIKLLLQKGYA-VNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLV   84 (338)
T ss_pred             CCCCCeEEEECCchHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEE
Confidence            356789999999999999999999999998 88887764322111  111111135888999999876     5689999


Q ss_pred             EEccCCCCccccccCh-hHHHHHhhhhHHHHHHHHHHh-CC-eEEEEecceeecCCC----CCCCCCCCcCCC----CCC
Q 025022          102 YHLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDPL----VHPQDESYWGNV----NPI  170 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~-~~-~~i~~Ss~~~~~~~~----~~~~~e~~~~~~----~~~  170 (259)
                      ||+|+....  ...++ ...+++|+.++.++++++.+. ++ +|||+||..+|+...    ..+.+|+.|...    .+.
T Consensus        85 ih~A~~~~~--~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~  162 (338)
T PLN00198         85 FHVATPVNF--ASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEK  162 (338)
T ss_pred             EEeCCCCcc--CCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcC
Confidence            999986432  22233 356799999999999999886 46 999999999998532    335566554321    133


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec-CCc----eeeeee
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQA-PGT----QTRSFC  245 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~i  245 (259)
                      .|.++|+.+|.++|.+++.++++++++++++||+++|||+........+. ++..+..+.++.+.+ .+.    ..++|+
T Consensus       163 ~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~i  241 (338)
T PLN00198        163 PPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLS-LAMSLITGNEFLINGLKGMQMLSGSISIT  241 (338)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHH-HHHHHHcCCccccccccccccccCCccee
Confidence            46778999999999999999988899999999999999986433222332 333455565555544 222    237999


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      |++|+|++++.++
T Consensus       242 ~V~D~a~a~~~~~  254 (338)
T PLN00198        242 HVEDVCRAHIFLA  254 (338)
T ss_pred             EHHHHHHHHHHHh
Confidence            9999999998765

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=100.00  E-value=1.7e-32  Score=246.63  Aligned_cols=221  Identities=29%  Similarity=0.433  Sum_probs=176.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhc--CCCeEEEEcCCCCC-CcchhhhccCCCceeEeecccCccc-------cCCcC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPL-------LIEVD   99 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d   99 (259)
                      ...|+|||||||||||++|++.|+++  +++ |+++++.... ....+.......+++++.+|+.+.+       ..++|
T Consensus         4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~-V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D   82 (668)
T PLN02260          4 YEPKNILITGAAGFIASHVANRLIRNYPDYK-IVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID   82 (668)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHhCCCCE-EEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence            34689999999999999999999998  566 8888764211 1111111112357899999999866       25799


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCCCCC---CCCCCcCCCCCCCCCC
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHP---QDESYWGNVNPIGVRS  174 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~~~~---~~e~~~~~~~~~~~~~  174 (259)
                      +|||+|+.........++...+++|+.++.+++++|++.+ + +|||+||..+|+.....+   ..|+.     +..|.+
T Consensus        83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~-----~~~p~~  157 (668)
T PLN02260         83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEAS-----QLLPTN  157 (668)
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccC-----CCCCCC
Confidence            9999999765443445567788999999999999999987 5 999999999999754332   23443     556778


Q ss_pred             chHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKS  254 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~  254 (259)
                      .|+.+|.++|++++.+.++.+++++++||+++|||+..+  ..+++.++..+..+.++.+++++.+.++|+|++|+|+++
T Consensus       158 ~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~--~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~  235 (668)
T PLN02260        158 PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFP--EKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAF  235 (668)
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCc--ccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHH
Confidence            999999999999999988889999999999999998543  347778888888888888889999999999999999999


Q ss_pred             Hhhh
Q 025022          255 CFLA  258 (259)
Q Consensus       255 ~~~l  258 (259)
                      ..++
T Consensus       236 ~~~l  239 (668)
T PLN02260        236 EVVL  239 (668)
T ss_pred             HHHH
Confidence            8764

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=100.00  E-value=4.3e-32  Score=227.80  Aligned_cols=220  Identities=26%  Similarity=0.341  Sum_probs=169.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      ..+|+|+|||||||||+++++.|+++|++ |++++|......   ...  ....+++.+|+++.+     +.++|+|||+
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~-V~~v~r~~~~~~---~~~--~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~   92 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHY-IIASDWKKNEHM---SED--MFCHEFHLVDLRVMENCLKVTKGVDHVFNL   92 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCE-EEEEEecccccc---ccc--cccceEEECCCCCHHHHHHHHhCCCEEEEc
Confidence            35789999999999999999999999998 999988543211   110  113567889998765     4689999999


Q ss_pred             cCCCCcc-ccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCC----CCCCCCCcCCCCCCCCCCchHH
Q 025022          105 ACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV----HPQDESYWGNVNPIGVRSCYDE  178 (259)
Q Consensus       105 a~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~----~~~~e~~~~~~~~~~~~~~Y~~  178 (259)
                      |+..... ....++...+..|+.++.+++++|++.++ +|||+||..+|+....    .+..|+..   .+..|.+.|+.
T Consensus        93 Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~---~p~~p~s~Yg~  169 (370)
T PLN02695         93 AADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDA---WPAEPQDAYGL  169 (370)
T ss_pred             ccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccC---CCCCCCCHHHH
Confidence            9865321 11234455678899999999999999998 9999999999986432    12444320   15567789999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHc-CCCeEEecCCceeeeeeeHHHHHHHHH
Q 025022          179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIR-GEPLTVQAPGTQTRSFCYVSDMVCKSC  255 (259)
Q Consensus       179 sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~D~a~~~~  255 (259)
                      +|.++|++++.++.+++++++++||+++|||+.....  ...+..++..+.. +.++.+++++++.++|+|++|++++++
T Consensus       170 sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~  249 (370)
T PLN02695        170 EKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVL  249 (370)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHH
Confidence            9999999999998888999999999999999754322  2245566666554 577888899999999999999999998


Q ss_pred             hhh
Q 025022          256 FLA  258 (259)
Q Consensus       256 ~~l  258 (259)
                      .++
T Consensus       250 ~~~  252 (370)
T PLN02695        250 RLT  252 (370)
T ss_pred             HHH
Confidence            754

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=100.00  E-value=3.7e-32  Score=226.53  Aligned_cols=222  Identities=22%  Similarity=0.253  Sum_probs=173.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhcc-----CCCceeEeecccCccc-----cC--
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI-----GHPRFELIRHDVTEPL-----LI--   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~-----~~~~~~~~~~dl~~~~-----~~--   96 (259)
                      .++|+||||||+||||++++++|+++|++ |+++.|+.... ...+....     ...++.++.+|+++.+     +.  
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   82 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGYE-VHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI   82 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence            45789999999999999999999999998 98888764321 11222111     1235889999999876     22  


Q ss_pred             CcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC------eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022           97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA------RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ++|+|||+|+.........++...+++|+.++.+++++|++.++      +||++||..+|+.... +.+|+.     +.
T Consensus        83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~~-----~~  156 (340)
T PLN02653         83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSETT-----PF  156 (340)
T ss_pred             CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCCC-----CC
Confidence            58999999997654333456677889999999999999988764      7999999999997654 677765     77


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCCeEE-ecCCceeeeeeeHH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGEPLTV-QAPGTQTRSFCYVS  248 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~  248 (259)
                      .|.+.|+.+|.++|.+++.++++++++++..|+.++|||+..... ...+..++..+..+.++.+ .|++++.++|+|++
T Consensus       157 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~  236 (340)
T PLN02653        157 HPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAG  236 (340)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecceeHH
Confidence            788899999999999999999888999999999999999743211 2234444556666765544 48889999999999


Q ss_pred             HHHHHHHhhh
Q 025022          249 DMVCKSCFLA  258 (259)
Q Consensus       249 D~a~~~~~~l  258 (259)
                      |+|++++.++
T Consensus       237 D~a~a~~~~~  246 (340)
T PLN02653        237 DYVEAMWLML  246 (340)
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=100.00  E-value=9.6e-32  Score=221.89  Aligned_cols=217  Identities=33%  Similarity=0.517  Sum_probs=174.0

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCCC-CCcchhhhccCCCceeEeecccCccc-----cCC--cCEEEE
Q 025022           34 RILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPL-----LIE--VDQIYH  103 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~--~d~vi~  103 (259)
                      +|+||||||+||++++++|+++|  ++ |++++|... ...+.+.......+++++.+|+.+.+     +.+  +|+|||
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~   79 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAE-VIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVH   79 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCE-EEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEE
Confidence            58999999999999999999987  45 888876422 11222222222346888999999877     333  899999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCC-CCCCCCcCCCCCCCCCCchHHHH
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVH-PQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~-~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      +|+.........+++..+++|+.++.+++++|.+.+.  ++|++||..+|+..... +.+|..     +..|.+.|+.+|
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~-----~~~~~~~Y~~sK  154 (317)
T TIGR01181        80 FAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETT-----PLAPSSPYSASK  154 (317)
T ss_pred             cccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCC-----CCCCCCchHHHH
Confidence            9997654444456778899999999999999988643  99999999999865432 566665     666778999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ...|.+++.++.+.+++++++||+.+|||...+  ..+++.++..+..+.+++++++++..++|+|++|+|+++..++
T Consensus       155 ~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~  230 (317)
T TIGR01181       155 AASDHLVRAYHRTYGLPALITRCSNNYGPYQFP--EKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVL  230 (317)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEeccccCCCCCc--ccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHH
Confidence            999999999988889999999999999997543  3477888888888888888888889999999999999998764

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=100.00  E-value=4.7e-32  Score=222.95  Aligned_cols=207  Identities=22%  Similarity=0.300  Sum_probs=154.8

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCcc---c-----------cCCcCE
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---L-----------LIEVDQ  100 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~---~-----------~~~~d~  100 (259)
                      |+||||+||||++|+++|+++|++ ++++.|+..... ...        .+..+|+.|.   +           ..++|+
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~-~v~~~~~~~~~~-~~~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~   71 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGIT-DILVVDNLKDGT-KFV--------NLVDLDIADYMDKEDFLAQIMAGDDFGDIEA   71 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCc-eEEEecCCCcch-HHH--------hhhhhhhhhhhhHHHHHHHHhcccccCCccE
Confidence            799999999999999999999997 555544322211 010        1112233221   1           137999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      |||+||.....  ..+....++.|+.++.+++++|++.+++|||+||..+|+.....+.+|+.     +..|.+.|+.+|
T Consensus        72 Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~-----~~~p~~~Y~~sK  144 (308)
T PRK11150         72 IFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTDDFIEERE-----YEKPLNVYGYSK  144 (308)
T ss_pred             EEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhCcCCCCCCccCC-----CCCCCCHHHHHH
Confidence            99999865432  23455678999999999999999988899999999999976555566654     667778899999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEe-cCCceeeeeeeHHHHHHHHHhh
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQ-APGTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~D~a~~~~~~  257 (259)
                      .++|++++.++...+++++++|++++|||+..+..  ...+..+.+.+.++....++ ++++..++|+|++|+|++++.+
T Consensus       145 ~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~  224 (308)
T PRK11150        145 FLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWF  224 (308)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHH
Confidence            99999999998888999999999999999864321  22444555677777765555 5567789999999999998776


Q ss_pred             h
Q 025022          258 A  258 (259)
Q Consensus       258 l  258 (259)
                      +
T Consensus       225 ~  225 (308)
T PRK11150        225 W  225 (308)
T ss_pred             H
Confidence            4

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=100.00  E-value=4e-32  Score=222.04  Aligned_cols=194  Identities=21%  Similarity=0.138  Sum_probs=159.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~~a  105 (259)
                      |+||||||+||||++|++.|+++| . |++++|..                ..+.+|++|.+     +.  ++|+|||+|
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~-V~~~~~~~----------------~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A   62 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-N-LIALDVHS----------------TDYCGDFSNPEGVAETVRKIRPDVIVNAA   62 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-C-EEEecccc----------------ccccCCCCCHHHHHHHHHhcCCCEEEECC
Confidence            689999999999999999999999 6 88888742                12357888765     22  689999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      +......+..+++..+.+|+.++.+++++|++.++++||+||..+|+.....+++|++     +..|.+.|+.+|..+|+
T Consensus        63 a~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~~~~~p~~E~~-----~~~P~~~Yg~sK~~~E~  137 (299)
T PRK09987         63 AHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPGTGDIPWQETD-----ATAPLNVYGETKLAGEK  137 (299)
T ss_pred             ccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEECCCCCCCcCCCC-----CCCCCCHHHHHHHHHHH
Confidence            9876655566778888999999999999999998899999999999887667888876     77888999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC--CceeeeeeeHHHHHHHHHhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP--GTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~D~a~~~~~~  257 (259)
                      +++.+.    .+++++|++++|||+.    ..++..+++.+..++++.++++  +...+.+.+++|+++++..+
T Consensus       138 ~~~~~~----~~~~ilR~~~vyGp~~----~~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~  203 (299)
T PRK09987        138 ALQEHC----AKHLIFRTSWVYAGKG----NNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVA  203 (299)
T ss_pred             HHHHhC----CCEEEEecceecCCCC----CCHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHh
Confidence            986653    4579999999999973    2477788888888888888876  55555666777778777654

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=8.5e-32  Score=225.34  Aligned_cols=227  Identities=21%  Similarity=0.275  Sum_probs=159.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      .++|+||||||+||||++++++|+++|++ |+++.|+...............+++++.+|+.+.+     +.++|+|||+
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~   86 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYT-VHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHV   86 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence            45789999999999999999999999998 88888764332222222112246889999999876     5679999999


Q ss_pred             cCCCCccc--cccChhH-----HHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCCC-----CCCCCCCcCCCC--
Q 025022          105 ACPASPIF--YKYNPVK-----TIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLV-----HPQDESYWGNVN--  168 (259)
Q Consensus       105 a~~~~~~~--~~~~~~~-----~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~~-----~~~~e~~~~~~~--  168 (259)
                      |+......  ...+++.     .++.|+.++.+++++|.+.+ + +||++||..+|+....     .+++|+.+.+.+  
T Consensus        87 A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~  166 (353)
T PLN02896         87 AASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHV  166 (353)
T ss_pred             CccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHh
Confidence            99764321  2223333     34555699999999998875 5 9999999999985321     345665332211  


Q ss_pred             --CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCC--eEEecCC---cee
Q 025022          169 --PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEP--LTVQAPG---TQT  241 (259)
Q Consensus       169 --~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~  241 (259)
                        +..+.+.|+.||.++|++++.+++.++++++++||+++|||+........+..+...+ .+..  ....+..   ...
T Consensus       167 ~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~  245 (353)
T PLN02896        167 WNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPI-TGDSKLFSILSAVNSRMGS  245 (353)
T ss_pred             hccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHh-cCCccccccccccccccCc
Confidence              1234468999999999999999988999999999999999986533222333333222 2322  1111111   124


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ++|+|++|+|++++.++
T Consensus       246 ~dfi~v~Dva~a~~~~l  262 (353)
T PLN02896        246 IALVHIEDICDAHIFLM  262 (353)
T ss_pred             eeEEeHHHHHHHHHHHH
Confidence            69999999999998875

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.7e-32  Score=209.23  Aligned_cols=218  Identities=28%  Similarity=0.433  Sum_probs=187.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCC-CCCcchhhhccCCCceeEeecccCccc-------cCCcCEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIY  102 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi  102 (259)
                      ++++||||.||||++.++.+...-  +. .+.++.-. -.....++.-...++.+++++|+.+..       -..+|.|+
T Consensus         7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~-~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vi   85 (331)
T KOG0747|consen    7 KNVLITGGAGFIGSNFINYLVDKYPDYK-FVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVI   85 (331)
T ss_pred             ceEEEecCcCcchhhhhhhcccCCCCCc-EEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhh
Confidence            799999999999999999998873  44 55554321 112334444445689999999999988       45799999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCCCCC-CCCcCCCCCCCCCCchHHH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQD-ESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~~~~-e~~~~~~~~~~~~~~Y~~s  179 (259)
                      |.|+..+.+....++...+..|+.++..|+++++..|.  +|||+||..|||++.+.... |.+     .+.|.++|+++
T Consensus        86 hfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s-----~~nPtnpyAas  160 (331)
T KOG0747|consen   86 HFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEAS-----LLNPTNPYAAS  160 (331)
T ss_pred             hhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccc-----cCCCCCchHHH
Confidence            99999888778888899999999999999999999965  99999999999998876666 665     88999999999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |+++|..++.+..+++++++++|.++||||++.+.  ..++.++.....+.+.++.|+|.+.++|+|++|+++++..++
T Consensus       161 KaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~--klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~  237 (331)
T KOG0747|consen  161 KAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPE--KLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVL  237 (331)
T ss_pred             HHHHHHHHHHHhhccCCcEEEEeccCccCCCcChH--HHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHH
Confidence            99999999999999999999999999999997643  488899998888999999999999999999999999987654

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.8e-31  Score=217.46  Aligned_cols=215  Identities=38%  Similarity=0.524  Sum_probs=170.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCc-CEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEV-DQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~-d~vi~~a~  106 (259)
                      |+|||||||||||++|++.|+++|++ |++++|.........      ..+.++.+|+++.+     ...+ |+|||+|+
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa   73 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGHD-VRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAA   73 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCCe-EEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccc
Confidence            45999999999999999999999999 999998655443222      36788888888865     3445 99999999


Q ss_pred             CCCcccccc-ChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCC-CCCCCCCCCcCCCCCCCCCCchHHHHHHH
Q 025022          107 PASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPIGVRSCYDEGKRVA  183 (259)
Q Consensus       107 ~~~~~~~~~-~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~-~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~  183 (259)
                      ......... ++...++.|+.++.+++++|++.++ +|||+||.++|+.. ...+.+|+.    .+..|.+.|+.+|.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~----~~~~p~~~Yg~sK~~~  149 (314)
T COG0451          74 QSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDL----GPPRPLNPYGVSKLAA  149 (314)
T ss_pred             cCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCccccc----CCCCCCCHHHHHHHHH
Confidence            876432222 3566899999999999999999888 99998887877754 333677763    2666666899999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCc-cHHHHHHHHHHcCCC-eEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG-RVVSNFIAQAIRGEP-LTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       184 e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |+.++.+....+++++++||+++|||+..+... .++..++.....+.+ ....+++...++++|++|++++++.++
T Consensus       150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~  226 (314)
T COG0451         150 EQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLAL  226 (314)
T ss_pred             HHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHH
Confidence            999999988788999999999999999765432 356666666777775 566667788899999999999998765

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=100.00  E-value=5.6e-31  Score=217.94  Aligned_cols=220  Identities=21%  Similarity=0.270  Sum_probs=159.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc--hhhhcc-CCCceeEeecccCccc-----cCCcCEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NLRKWI-GHPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~~~~-~~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      ++|+||||||+||||++++++|+++|++ |+++.|+......  .+.... ...+++++.+|+++.+     +.++|+||
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYT-VKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCE-EEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            4689999999999999999999999998 8888876432211  111110 1247889999999876     67899999


Q ss_pred             EccCCCCccccccCh-hHHHHHhhhhHHHHHHHHHHh-CC-eEEEEecce--eecCC---CCCCCCCCCcCCCC-CCCCC
Q 025022          103 HLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSE--VYGDP---LVHPQDESYWGNVN-PIGVR  173 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~-~~-~~i~~Ss~~--~~~~~---~~~~~~e~~~~~~~-~~~~~  173 (259)
                      |+|+....  ...++ ...+++|+.++.+++++|.+. ++ +|||+||.+  +|+..   ...+++|+.+.... +....
T Consensus        82 h~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~  159 (322)
T PLN02662         82 HTASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESK  159 (322)
T ss_pred             EeCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhccc
Confidence            99987532  22233 378899999999999999887 77 999999986  36532   22346665421100 01123


Q ss_pred             CchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHH
Q 025022          174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCK  253 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  253 (259)
                      +.|+.+|..+|++++.+.++++++++++||+++|||...+.. .....++..+..+.+.  .+  ...++|+|++|+|++
T Consensus       160 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~-~~~~~~~~~~~~~~~~--~~--~~~~~~i~v~Dva~a  234 (322)
T PLN02662        160 LWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTL-NTSAEAILNLINGAQT--FP--NASYRWVDVRDVANA  234 (322)
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCC-CchHHHHHHHhcCCcc--CC--CCCcCeEEHHHHHHH
Confidence            579999999999999998888999999999999999864321 2333444555555431  22  457899999999999


Q ss_pred             HHhhh
Q 025022          254 SCFLA  258 (259)
Q Consensus       254 ~~~~l  258 (259)
                      ++.++
T Consensus       235 ~~~~~  239 (322)
T PLN02662        235 HIQAF  239 (322)
T ss_pred             HHHHh
Confidence            98765

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=100.00  E-value=8.8e-31  Score=217.00  Aligned_cols=221  Identities=20%  Similarity=0.267  Sum_probs=163.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc----CCCceeEeecccCccc-----cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      ++|+++||||+||||+++++.|+++|++ |+++.|+....... ....    ...+++++.+|+++.+     +.++|+|
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   81 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYT-INATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV   81 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCE-EEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence            4689999999999999999999999998 88877764432211 1111    1246889999999887     5679999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CC-eEEEEecceeecCCC-----CCCCCCCCcCCCCC-CCCC
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDPL-----VHPQDESYWGNVNP-IGVR  173 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~~Ss~~~~~~~~-----~~~~~e~~~~~~~~-~~~~  173 (259)
                      ||+||.........++...+++|+.++.+++++|.+. +. +||++||..+|+...     ..+++|+.+..... ..+.
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~  161 (325)
T PLN02989         82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERK  161 (325)
T ss_pred             EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccc
Confidence            9999975432233456788899999999999999885 45 999999998765432     34567775332110 1234


Q ss_pred             CchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHH
Q 025022          174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCK  253 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  253 (259)
                      +.|+.+|..+|.+++.+.++++++++++||+++|||+..+.. .++..++..+..++..  ++  ...++|+|++|+|++
T Consensus       162 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~-~~~~~~i~~~~~~~~~--~~--~~~r~~i~v~Dva~a  236 (325)
T PLN02989        162 QWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTL-NFSVAVIVELMKGKNP--FN--TTHHRFVDVRDVALA  236 (325)
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCC-CchHHHHHHHHcCCCC--CC--CcCcCeeEHHHHHHH
Confidence            679999999999999998888999999999999999865432 2444455555555532  22  345799999999999


Q ss_pred             HHhhh
Q 025022          254 SCFLA  258 (259)
Q Consensus       254 ~~~~l  258 (259)
                      ++.++
T Consensus       237 ~~~~l  241 (325)
T PLN02989        237 HVKAL  241 (325)
T ss_pred             HHHHh
Confidence            98765

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.98  E-value=7e-31  Score=217.26  Aligned_cols=220  Identities=22%  Similarity=0.319  Sum_probs=162.3

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc----CCCceeEeecccCccc-----cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      .+++|+||||+||||++++++|+++|++ |+++.|+..... ......    ...+++++.+|+++.+     +.++|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v   81 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYT-VKATVRDLTDRK-KTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAV   81 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCCcchH-HHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence            4689999999999999999999999998 888887654322 111111    1246889999999877     5679999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CC-eEEEEecceee--cCC---CCCCCCCCCcCCCC-CCCCC
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY--GDP---LVHPQDESYWGNVN-PIGVR  173 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~~Ss~~~~--~~~---~~~~~~e~~~~~~~-~~~~~  173 (259)
                      ||+|+..... ........+++|+.++.+++++|++. ++ |||++||..+|  +..   ....++|+.|.... +..+.
T Consensus        82 ih~A~~~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~  160 (322)
T PLN02986         82 FHTASPVFFT-VKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETK  160 (322)
T ss_pred             EEeCCCcCCC-CCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccc
Confidence            9999975321 12223457899999999999999986 56 99999998754  332   23456777654211 11345


Q ss_pred             CchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHH
Q 025022          174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCK  253 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  253 (259)
                      +.|+.+|..+|.+++.+.++++++++++||+++|||...+.. .....++..+..+.++  ++  ...++|+|++|+|++
T Consensus       161 ~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~-~~~~~~~~~~~~g~~~--~~--~~~~~~v~v~Dva~a  235 (322)
T PLN02986        161 NWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTL-NFSVELIVDFINGKNL--FN--NRFYRFVDVRDVALA  235 (322)
T ss_pred             cchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCC-CccHHHHHHHHcCCCC--CC--CcCcceeEHHHHHHH
Confidence            789999999999999999888999999999999999865421 1223445555555542  33  456899999999999


Q ss_pred             HHhhh
Q 025022          254 SCFLA  258 (259)
Q Consensus       254 ~~~~l  258 (259)
                      ++.++
T Consensus       236 ~~~al  240 (322)
T PLN02986        236 HIKAL  240 (322)
T ss_pred             HHHHh
Confidence            98775

>PLN02240 UDP-glucose 4-epimerase

Probab=99.98  E-value=2e-30  Score=217.18  Aligned_cols=223  Identities=26%  Similarity=0.378  Sum_probs=168.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc---hhhhcc--CCCceeEeecccCccc-----c--CC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWI--GHPRFELIRHDVTEPL-----L--IE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~~--~~~~~~~~~~dl~~~~-----~--~~   97 (259)
                      |++++|+||||||+||++|+++|+++|++ |++++|.......   ......  ...++.++.+|+.+.+     +  .+
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGYK-VVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            56789999999999999999999999998 8888765332211   111111  1236788999999877     2  36


Q ss_pred             cCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCch
Q 025022           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY  176 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y  176 (259)
                      +|+|||+|+.........++...+++|+.++.+++++|++.++ +||++||..+|+.....+++|+.     +..+.+.|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~-----~~~~~~~Y  156 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEF-----PLSATNPY  156 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCC-----CCCCCCHH
Confidence            8999999986543333456778899999999999999999887 99999999999876667788876     67778899


Q ss_pred             HHHHHHHHHHHHHHHHH-hCCcEEEEEeccccCCCCCC------C-CccHHHHHHHHHHcCC--CeEEec------CCce
Q 025022          177 DEGKRVAETLMFDYHRQ-HGIEIRIARIFNTYGPRMNI------D-DGRVVSNFIAQAIRGE--PLTVQA------PGTQ  240 (259)
Q Consensus       177 ~~sK~~~e~~~~~~~~~-~~~~~~~lr~~~v~g~~~~~------~-~~~~~~~~~~~~~~~~--~~~~~~------~~~~  240 (259)
                      +.+|.++|++++.++.. .+++++++|++++||+....      . ....+..++..+..+.  .+.+++      ++.+
T Consensus       157 ~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~  236 (352)
T PLN02240        157 GRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTG  236 (352)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCE
Confidence            99999999999988754 57899999999999975321      0 0112223344444443  445554      6788


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      .++|+|++|+|++++.++
T Consensus       237 ~~~~i~v~D~a~a~~~a~  254 (352)
T PLN02240        237 VRDYIHVMDLADGHIAAL  254 (352)
T ss_pred             EEeeEEHHHHHHHHHHHH
Confidence            999999999999887654

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.98  E-value=1.9e-30  Score=214.47  Aligned_cols=202  Identities=25%  Similarity=0.304  Sum_probs=159.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      +++|+|+||||+||||++++++|+++|  +. |++++|+.... ..+.......+++++.+|+++.+     +.++|+||
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~-V~~~~r~~~~~-~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vi   79 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKK-IIIYSRDELKQ-WEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVV   79 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcE-EEEEcCChhHH-HHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence            357899999999999999999999986  55 88888754322 11222222246889999999987     56799999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKR  181 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~  181 (259)
                      |+||.........++...+++|+.++.+++++|.+.++ +||++||..                   +..|.+.|+.+|.
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~-------------------~~~p~~~Y~~sK~  140 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDK-------------------AANPINLYGATKL  140 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCC-------------------CCCCCCHHHHHHH
Confidence            99997543334456678999999999999999999988 999999853                   3334567999999


Q ss_pred             HHHHHHHHHH---HHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCC-CeEEecCCceeeeeeeHHHHHHHHHhh
Q 025022          182 VAETLMFDYH---RQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGE-PLTVQAPGTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       182 ~~e~~~~~~~---~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~~~~~~  257 (259)
                      +.|.+++.++   ...+++++++||+++|||+.     .+++.+......+. ++++. ++...++|+|++|++++++.+
T Consensus       141 ~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~-----~~i~~~~~~~~~~~~~~~i~-~~~~~r~~i~v~D~a~a~~~a  214 (324)
T TIGR03589       141 ASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG-----SVVPFFKSLKEEGVTELPIT-DPRMTRFWITLEQGVNFVLKS  214 (324)
T ss_pred             HHHHHHHHHHhhccccCcEEEEEeecceeCCCC-----CcHHHHHHHHHhCCCCeeeC-CCCceEeeEEHHHHHHHHHHH
Confidence            9999998754   34689999999999999862     36677777666665 56654 667889999999999999876


Q ss_pred             h
Q 025022          258 A  258 (259)
Q Consensus       258 l  258 (259)
                      +
T Consensus       215 l  215 (324)
T TIGR03589       215 L  215 (324)
T ss_pred             H
Confidence            5

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02650 dihydroflavonol-4-reductase

Probab=99.98  E-value=1.7e-30  Score=217.39  Aligned_cols=221  Identities=22%  Similarity=0.312  Sum_probs=157.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC----CCceeEeecccCccc-----cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      +.++||||||+||||++++++|+++|++ |+++.|+..... .+.....    ..++.++.+|+.+.+     +.++|+|
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~-V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~V   81 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYT-VRATVRDPANVK-KVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGV   81 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCE-EEEEEcCcchhH-HHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEE
Confidence            4679999999999999999999999998 888887543322 1111111    135788999999876     5679999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCC-CCC-CCCCCcCCCC----CCCCC
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL-VHP-QDESYWGNVN----PIGVR  173 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~-~~~-~~e~~~~~~~----~~~~~  173 (259)
                      ||+|+..... ........+++|+.++.+++++|.+.+ + +|||+||..+|+... ..+ ++|+.|...+    +..+.
T Consensus        82 iH~A~~~~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  160 (351)
T PLN02650         82 FHVATPMDFE-SKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTG  160 (351)
T ss_pred             EEeCCCCCCC-CCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhcccccc
Confidence            9999865321 112234788999999999999999977 5 999999997765432 233 4666543211    22344


Q ss_pred             CchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHH
Q 025022          174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      +.|+.+|.+.|.+++.++++++++++++||+++|||+..... ..++..+  ....+.... ++. ...++|+|++|+|+
T Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~--~~~~~~~~~-~~~-~~~r~~v~V~Dva~  236 (351)
T PLN02650        161 WMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITAL--SLITGNEAH-YSI-IKQGQFVHLDDLCN  236 (351)
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHH--HHhcCCccc-cCc-CCCcceeeHHHHHH
Confidence            689999999999999999889999999999999999864321 1122211  112233221 222 23479999999999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      +++.++
T Consensus       237 a~~~~l  242 (351)
T PLN02650        237 AHIFLF  242 (351)
T ss_pred             HHHHHh
Confidence            998875

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.98  E-value=1.1e-30  Score=214.75  Aligned_cols=202  Identities=23%  Similarity=0.275  Sum_probs=155.7

Q ss_pred             EEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEccCCC
Q 025022           36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLACPA  108 (259)
Q Consensus        36 lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~a~~~  108 (259)
                      ||||||||||++|++.|+++|+. |+++.+.                   ..+|+.+.+       ..++|+|||+|+..
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~-v~~~~~~-------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~   60 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFT-NLVLRTH-------------------KELDLTRQADVEAFFAKEKPTYVILAAAKV   60 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCc-EEEeecc-------------------ccCCCCCHHHHHHHHhccCCCEEEEeeeee
Confidence            69999999999999999999998 6655432                   135665554       23689999999875


Q ss_pred             Cc-cccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC-chHHHHHHHHH
Q 025022          109 SP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS-CYDEGKRVAET  185 (259)
Q Consensus       109 ~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~-~Y~~sK~~~e~  185 (259)
                      .. .....++...++.|+.++.+++++|++.++ ++||+||..+|+.....+.+|+++.+. +..|.+ .|+.+|.++|+
T Consensus        61 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~-~~~p~~~~Y~~sK~~~e~  139 (306)
T PLN02725         61 GGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLTG-PPEPTNEWYAIAKIAGIK  139 (306)
T ss_pred             cccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhccC-CCCCCcchHHHHHHHHHH
Confidence            42 122345677899999999999999999998 999999999999766778888764321 333433 59999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCC--CCccHHHHHHH----HHHcCCCeEE-ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNI--DDGRVVSNFIA----QAIRGEPLTV-QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~--~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +++.+.+..+++++++||+++|||+...  .....++.++.    ....+.++.+ ++++.+.++|+|++|++++++.++
T Consensus       140 ~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~  219 (306)
T PLN02725        140 MCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLM  219 (306)
T ss_pred             HHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHH
Confidence            9999988889999999999999998532  11234444443    3345666555 678889999999999999998765

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.97  E-value=3.7e-31  Score=214.42  Aligned_cols=190  Identities=28%  Similarity=0.330  Sum_probs=149.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~a  105 (259)
                      ||||||||+|+||++|++.|.++|+. |+++.|.                    ..|+.+.+       ..++|+|||+|
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~-v~~~~r~--------------------~~dl~d~~~~~~~~~~~~pd~Vin~a   59 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYE-VIATSRS--------------------DLDLTDPEAVAKLLEAFKPDVVINCA   59 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEE-EEEESTT--------------------CS-TTSHHHHHHHHHHH--SEEEE--
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCE-EEEeCch--------------------hcCCCCHHHHHHHHHHhCCCeEeccc
Confidence            79999999999999999999999988 8888764                    34444443       23699999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      |....+.++.+++..+.+|+.++.+++++|.+.+.++||+||..||+.....+++|++     ++.|.+.||.+|..+|+
T Consensus        60 a~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~~~~~y~E~d-----~~~P~~~YG~~K~~~E~  134 (286)
T PF04321_consen   60 AYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGDKGGPYTEDD-----PPNPLNVYGRSKLEGEQ  134 (286)
T ss_dssp             ----HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SSTSSSB-TTS---------SSHHHHHHHHHHH
T ss_pred             eeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCCcccccccCC-----CCCCCCHHHHHHHHHHH
Confidence            9988778888999999999999999999999999999999999999887778888887     88999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .++..    ..++.|+|++++||+.    ...++..++....+++.+.++.  +..+++++++|+|+++..++
T Consensus       135 ~v~~~----~~~~~IlR~~~~~g~~----~~~~~~~~~~~~~~~~~i~~~~--d~~~~p~~~~dlA~~i~~l~  197 (286)
T PF04321_consen  135 AVRAA----CPNALILRTSWVYGPS----GRNFLRWLLRRLRQGEPIKLFD--DQYRSPTYVDDLARVILELI  197 (286)
T ss_dssp             HHHHH-----SSEEEEEE-SEESSS----SSSHHHHHHHHHHCTSEEEEES--SCEE--EEHHHHHHHHHHHH
T ss_pred             HHHHh----cCCEEEEecceecccC----CCchhhhHHHHHhcCCeeEeeC--CceeCCEEHHHHHHHHHHHH
Confidence            98663    3479999999999994    3358888999999999998876  57889999999999998875

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.97  E-value=7.9e-30  Score=212.43  Aligned_cols=219  Identities=27%  Similarity=0.442  Sum_probs=162.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh--ccCCCceeEeecccCccc-----c--CCcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK--WIGHPRFELIRHDVTEPL-----L--IEVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~dl~~~~-----~--~~~d~vi~  103 (259)
                      |+|+||||+||||+++++.|+++|++ |++++|...........  .....++.++.+|+++.+     +  .++|+|||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh   79 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGHD-VVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIH   79 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCe-EEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEE
Confidence            68999999999999999999999998 88887643322211111  111235678899998876     2  36999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC-CCCCchHHHHH
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI-GVRSCYDEGKR  181 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~-~~~~~Y~~sK~  181 (259)
                      +|+..............+++|+.++.+++++|++.++ +||++||..+|+.....+++|+.     +. .|...|+.+|.
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~-----~~~~p~~~Y~~sK~  154 (338)
T PRK10675         80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKL  154 (338)
T ss_pred             CCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCcccccc-----CCCCCCChhHHHHH
Confidence            9986543223345667889999999999999999988 99999999999876666777775     43 56789999999


Q ss_pred             HHHHHHHHHHHHh-CCcEEEEEeccccCCCCCC----C----CccHHHHHHHHHHcC--CCeEEec------CCceeeee
Q 025022          182 VAETLMFDYHRQH-GIEIRIARIFNTYGPRMNI----D----DGRVVSNFIAQAIRG--EPLTVQA------PGTQTRSF  244 (259)
Q Consensus       182 ~~e~~~~~~~~~~-~~~~~~lr~~~v~g~~~~~----~----~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~  244 (259)
                      +.|++++.+++.. +++++++|++++|||....    .    ...++..+ ..+..+  ..+.+++      ++.+.++|
T Consensus       155 ~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  233 (338)
T PRK10675        155 MVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYI-AQVAVGRRDSLAIFGNDYPTEDGTGVRDY  233 (338)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHH-HHHHhcCCCceEEeCCcCCCCCCcEEEee
Confidence            9999999987654 7899999999999974211    0    11133333 333333  2344444      56788999


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      +|++|+|++++.++
T Consensus       234 v~v~D~a~~~~~~~  247 (338)
T PRK10675        234 IHVMDLADGHVAAM  247 (338)
T ss_pred             EEHHHHHHHHHHHH
Confidence            99999999987764

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=6e-30  Score=200.99  Aligned_cols=189  Identities=26%  Similarity=0.263  Sum_probs=167.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~a  105 (259)
                      |+|||||++|++|.+|++.|. .+++ |+++++..                    .|+++.+       ..++|+|||+|
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~~-v~a~~~~~--------------------~Ditd~~~v~~~i~~~~PDvVIn~A   58 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEFE-VIATDRAE--------------------LDITDPDAVLEVIRETRPDVVINAA   58 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCce-EEeccCcc--------------------ccccChHHHHHHHHhhCCCEEEECc
Confidence            469999999999999999998 5566 99988742                    5666666       34799999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      +....+.++.+++..+.+|..++.+++++|.+.|.++||+||.+||......++.|++     ++.|.+.||.||.+.|.
T Consensus        59 Ayt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~D-----~~~P~nvYG~sKl~GE~  133 (281)
T COG1091          59 AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKETD-----TPNPLNVYGRSKLAGEE  133 (281)
T ss_pred             cccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCCC-----CCCChhhhhHHHHHHHH
Confidence            9999889999999999999999999999999999999999999999988888999987     99999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .++.+    +.+..|+|.+++||...    .+++..|++....++++.+..  ++..++++..|+|+++..++
T Consensus       134 ~v~~~----~~~~~I~Rtswv~g~~g----~nFv~tml~la~~~~~l~vv~--Dq~gsPt~~~dlA~~i~~ll  196 (281)
T COG1091         134 AVRAA----GPRHLILRTSWVYGEYG----NNFVKTMLRLAKEGKELKVVD--DQYGSPTYTEDLADAILELL  196 (281)
T ss_pred             HHHHh----CCCEEEEEeeeeecCCC----CCHHHHHHHHhhcCCceEEEC--CeeeCCccHHHHHHHHHHHH
Confidence            98554    46789999999999763    458889999999999999875  68889999999999998865

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.97  E-value=2.2e-29  Score=205.16  Aligned_cols=190  Identities=27%  Similarity=0.317  Sum_probs=154.1

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----c--CCcCEEEEccC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L--IEVDQIYHLAC  106 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~--~~~d~vi~~a~  106 (259)
                      +|+|+|||||||++++++|+++|++ |+++.|.                    .+|+.+.+     +  .++|+|||+|+
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~-v~~~~r~--------------------~~d~~~~~~~~~~~~~~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRV-VVALTSS--------------------QLDLTDPEALERLLRAIRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCE-EEEeCCc--------------------ccCCCCHHHHHHHHHhCCCCEEEECCc
Confidence            5899999999999999999999998 9998874                    23444433     2  25699999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL  186 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~  186 (259)
                      ..............+++|+.++.+++++|++.+.++|++||.++|+.....+++|++     +..+.+.|+.+|..+|+.
T Consensus        60 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~Ss~~vy~~~~~~~~~E~~-----~~~~~~~Y~~~K~~~E~~  134 (287)
T TIGR01214        60 YTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFDGEGKRPYREDD-----ATNPLNVYGQSKLAGEQA  134 (287)
T ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecCCCCCCCCCCC-----CCCCcchhhHHHHHHHHH
Confidence            765433344567788999999999999999887899999999999876667788876     666778999999999999


Q ss_pred             HHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       187 ~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ++.+    +.+++++||+++|||+..   ..++..++..+..+.++.+.++  ..++++|++|+|+++..++
T Consensus       135 ~~~~----~~~~~ilR~~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~Dva~a~~~~~  197 (287)
T TIGR01214       135 IRAA----GPNALIVRTSWLYGGGGG---RNFVRTMLRLAGRGEELRVVDD--QIGSPTYAKDLARVIAALL  197 (287)
T ss_pred             HHHh----CCCeEEEEeeecccCCCC---CCHHHHHHHHhhcCCCceEecC--CCcCCcCHHHHHHHHHHHH
Confidence            8654    678999999999999832   3366677777777777777653  5689999999999998765

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02686 cinnamoyl-CoA reductase

Probab=99.97  E-value=1.9e-29  Score=211.65  Aligned_cols=223  Identities=17%  Similarity=0.187  Sum_probs=160.7

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-------CCceeEeecccCccc-----
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-------HPRFELIRHDVTEPL-----   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~dl~~~~-----   94 (259)
                      ...+++|+||||||+||||+++++.|+++|++ |+++.|+.... ..+.....       ..++.++.+|+++.+     
T Consensus        48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~-V~~~~r~~~~~-~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~  125 (367)
T PLN02686         48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYS-VRIAVDTQEDK-EKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEA  125 (367)
T ss_pred             ccCCCCCEEEEECCchHHHHHHHHHHHHCCCE-EEEEeCCHHHH-HHHHHHhhhccccccCCceEEEEcCCCCHHHHHHH
Confidence            34567899999999999999999999999998 88777653221 11211100       125788999999877     


Q ss_pred             cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CC-eEEEEecc--eeecCC--CC--CCCCCCCcCC
Q 025022           95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTS--EVYGDP--LV--HPQDESYWGN  166 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~~Ss~--~~~~~~--~~--~~~~e~~~~~  166 (259)
                      +.++|.|||+|+...............+.|+.++.+++++|++. ++ +|||+||.  .+|+..  ..  ..++|+.|..
T Consensus       126 i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~  205 (367)
T PLN02686        126 FDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSD  205 (367)
T ss_pred             HHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCC
Confidence            56799999999875432211122355678999999999999986 67 99999996  467642  22  3466765543


Q ss_pred             C-CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          167 V-NPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       167 ~-~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      . .+..|.++|+.+|.++|++++.+++.++++++++||+++|||+.......   .+. ....+. +.+++++  .++|+
T Consensus       206 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~---~~~-~~~~g~-~~~~g~g--~~~~v  278 (367)
T PLN02686        206 ESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNST---ATI-AYLKGA-QEMLADG--LLATA  278 (367)
T ss_pred             hhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCCh---hHH-HHhcCC-CccCCCC--CcCeE
Confidence            2 24456678999999999999999888899999999999999985432211   122 233443 4555554  45799


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      ||+|+|++++.++
T Consensus       279 ~V~Dva~A~~~al  291 (367)
T PLN02686        279 DVERLAEAHVCVY  291 (367)
T ss_pred             EHHHHHHHHHHHH
Confidence            9999999998765

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.97  E-value=1.1e-28  Score=203.39  Aligned_cols=211  Identities=25%  Similarity=0.314  Sum_probs=159.4

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----c----CCcCEEEEcc
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L----IEVDQIYHLA  105 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~----~~~d~vi~~a  105 (259)
                      |||||||||||+++++.|.++|+..|++++|.....  .+...    ....+..|+.+.+     .    .++|+|||+|
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~--~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A   74 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH--KFLNL----ADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQG   74 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch--hhhhh----hheeeeccCcchhHHHHHHhhccCCCCEEEECc
Confidence            689999999999999999999974488887654321  11111    1134556666655     1    5799999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      +...  ....++...+++|+.++.+++++|++.+++|||+||..+|+... .+.+|++    .+..|.+.|+.+|..+|.
T Consensus        75 ~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~-~~~~e~~----~~~~p~~~Y~~sK~~~e~  147 (314)
T TIGR02197        75 ACSD--TTETDGEYMMENNYQYSKRLLDWCAEKGIPFIYASSAATYGDGE-AGFREGR----ELERPLNVYGYSKFLFDQ  147 (314)
T ss_pred             cccC--ccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEccHHhcCCCC-CCccccc----CcCCCCCHHHHHHHHHHH
Confidence            9754  23456778889999999999999999888999999999998753 3445543    123577889999999999


Q ss_pred             HHHHHHHH--hCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEe------cCCceeeeeeeHHHHHHHHH
Q 025022          186 LMFDYHRQ--HGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQ------APGTQTRSFCYVSDMVCKSC  255 (259)
Q Consensus       186 ~~~~~~~~--~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~v~D~a~~~~  255 (259)
                      +++.+...  .+++++++|++.+|||+.....  ..++..++..+..+.++.++      ++++..++|+|++|+++++.
T Consensus       148 ~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~  227 (314)
T TIGR02197       148 YVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNL  227 (314)
T ss_pred             HHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHH
Confidence            99875432  3579999999999999854321  24666777777888777664      45677899999999999998


Q ss_pred             hhh
Q 025022          256 FLA  258 (259)
Q Consensus       256 ~~l  258 (259)
                      .++
T Consensus       228 ~~~  230 (314)
T TIGR02197       228 WLL  230 (314)
T ss_pred             HHH
Confidence            765

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.97  E-value=1.5e-28  Score=203.68  Aligned_cols=219  Identities=29%  Similarity=0.450  Sum_probs=166.2

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEccC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLAC  106 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~a~  106 (259)
                      +|+||||+|+||++++++|+++|++ |+++++................++.++.+|+.+.+       ..++|+|||+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag   79 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHE-VVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAG   79 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCe-EEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECcc
Confidence            5899999999999999999999998 88876643332222222111125778899999887       247999999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      .........+....++.|+.++.+++++|.+.++ ++|++||..+|+.....+.+|+.     +..+.+.|+.+|...|.
T Consensus        80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~~-----~~~~~~~y~~sK~~~e~  154 (328)
T TIGR01179        80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISEDS-----PLGPINPYGRSKLMSER  154 (328)
T ss_pred             ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCccccC-----CCCCCCchHHHHHHHHH
Confidence            7644333445667889999999999999999887 99999999999876556677775     66677899999999999


Q ss_pred             HHHHHHHH-hCCcEEEEEeccccCCCCCCC-------CccHHHHHHHHHH-cCCCeEEec------CCceeeeeeeHHHH
Q 025022          186 LMFDYHRQ-HGIEIRIARIFNTYGPRMNID-------DGRVVSNFIAQAI-RGEPLTVQA------PGTQTRSFCYVSDM  250 (259)
Q Consensus       186 ~~~~~~~~-~~~~~~~lr~~~v~g~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~i~v~D~  250 (259)
                      +++.++.+ .+++++++||+.+|||.....       ...+++.+..... ...++.+++      ++...++|||++|+
T Consensus       155 ~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~  234 (328)
T TIGR01179       155 ILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDL  234 (328)
T ss_pred             HHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHH
Confidence            99998776 789999999999999864221       1224455554443 334444433      45678899999999


Q ss_pred             HHHHHhhh
Q 025022          251 VCKSCFLA  258 (259)
Q Consensus       251 a~~~~~~l  258 (259)
                      ++++..++
T Consensus       235 a~~~~~~~  242 (328)
T TIGR01179       235 ADAHLAAL  242 (328)
T ss_pred             HHHHHHHH
Confidence            99988764

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PLN02996 fatty acyl-CoA reductase

Probab=99.97  E-value=1e-28  Score=213.41  Aligned_cols=224  Identities=19%  Similarity=0.187  Sum_probs=164.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCCCCCCc--chhh-hc-----c--------------CCCcee
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSK--DNLR-KW-----I--------------GHPRFE   84 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~--~~~~-~~-----~--------------~~~~~~   84 (259)
                      ..++++|+|||||||||++|++.|++.+.  .+|+++.|..+...  +++. +.     +              ...++.
T Consensus         8 ~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~   87 (491)
T PLN02996          8 FLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVT   87 (491)
T ss_pred             HhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEE
Confidence            45789999999999999999999998643  35899998765322  1111 10     0              015789


Q ss_pred             EeecccCccc------------cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CC-eEEEEeccee
Q 025022           85 LIRHDVTEPL------------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEV  150 (259)
Q Consensus        85 ~~~~dl~~~~------------~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~~Ss~~~  150 (259)
                      ++.+|++++.            ..++|+|||+|+....   ..+++..+++|+.++.+++++|++. ++ +|||+||.++
T Consensus        88 ~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~v  164 (491)
T PLN02996         88 PVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYV  164 (491)
T ss_pred             EEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEE
Confidence            9999998432            4579999999997643   3467889999999999999999986 55 9999999999


Q ss_pred             ecCCCCCCCCCCCcCC--------------------------------------------CC---CCCCCCchHHHHHHH
Q 025022          151 YGDPLVHPQDESYWGN--------------------------------------------VN---PIGVRSCYDEGKRVA  183 (259)
Q Consensus       151 ~~~~~~~~~~e~~~~~--------------------------------------------~~---~~~~~~~Y~~sK~~~  183 (259)
                      ||.... .+.|..+..                                            ..   ...+.+.|+.||.++
T Consensus       165 yG~~~~-~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~a  243 (491)
T PLN02996        165 CGEKSG-LILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMG  243 (491)
T ss_pred             ecCCCc-eeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHH
Confidence            986432 122211110                                            00   112346799999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcc-----HHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR-----VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       184 e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |+++..++.  +++++++||++||||...+..+.     ....++..+..|....++++++..+|++||+|++++++.++
T Consensus       244 E~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~  321 (491)
T PLN02996        244 EMLLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAM  321 (491)
T ss_pred             HHHHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHH
Confidence            999987753  79999999999999987653321     22334445556666677899999999999999999998765

>PLN02583 cinnamoyl-CoA reductase

Probab=99.97  E-value=6.4e-29  Score=203.06  Aligned_cols=214  Identities=15%  Similarity=0.167  Sum_probs=154.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc--chhhhcc-CCCceeEeecccCccc-----cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWI-GHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~~-~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      ..+++|+|||||||||++++++|+++|++ |+++.|+.....  ..+.... ...+++++.+|+++.+     +.++|.|
T Consensus         4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~-V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v   82 (297)
T PLN02583          4 ESSKSVCVMDASGYVGFWLVKRLLSRGYT-VHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGL   82 (297)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEE
Confidence            34679999999999999999999999998 988887532211  1112211 1236888999999876     6789999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CC-eEEEEecceeecC--C---CCCCCCCCCcCCCC-CCCCC
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGD--P---LVHPQDESYWGNVN-PIGVR  173 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~~Ss~~~~~~--~---~~~~~~e~~~~~~~-~~~~~  173 (259)
                      +|+++....  ...+.+..+++|+.++.+++++|.+. ++ +||++||..++..  .   ...+++|+.|.+.. ...+.
T Consensus        83 ~~~~~~~~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  160 (297)
T PLN02583         83 FCCFDPPSD--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFK  160 (297)
T ss_pred             EEeCccCCc--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcc
Confidence            998765432  12245788999999999999999886 45 9999999865431  1   23356776654321 11122


Q ss_pred             CchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHH
Q 025022          174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCK  253 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  253 (259)
                      ..|+.+|..+|++++.++++.+++++++||+++|||+.....    .     ...+. ....++  ..++|||++|+|++
T Consensus       161 ~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~----~-----~~~~~-~~~~~~--~~~~~v~V~Dva~a  228 (297)
T PLN02583        161 LWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN----P-----YLKGA-AQMYEN--GVLVTVDVNFLVDA  228 (297)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch----h-----hhcCC-cccCcc--cCcceEEHHHHHHH
Confidence            479999999999999998888999999999999999854211    1     12222 122222  34679999999999


Q ss_pred             HHhhh
Q 025022          254 SCFLA  258 (259)
Q Consensus       254 ~~~~l  258 (259)
                      +++++
T Consensus       229 ~~~al  233 (297)
T PLN02583        229 HIRAF  233 (297)
T ss_pred             HHHHh
Confidence            98875

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.96  E-value=4.1e-28  Score=201.25  Aligned_cols=211  Identities=24%  Similarity=0.336  Sum_probs=159.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~~  107 (259)
                      |+|+||||+|+||+++++.|+++|++ |++++|+..... .+    ...+++++.+|+.+.+     +.++|+|||+|+.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~-~~----~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~   74 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEE-VRVLVRPTSDRR-NL----EGLDVEIVEGDLRDPASLRKAVAGCRALFHVAAD   74 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCE-EEEEEecCcccc-cc----ccCCceEEEeeCCCHHHHHHHHhCCCEEEEecee
Confidence            58999999999999999999999998 999998654321 11    1236889999999876     5689999999985


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecC-CCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~-~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      ..  .+..+++..+++|+.++.++++++++.++ ++|++||..+|+. ....+.+|+...  .+..+...|+.+|.+.|+
T Consensus        75 ~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~--~~~~~~~~Y~~sK~~~e~  150 (328)
T TIGR03466        75 YR--LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPS--SLDDMIGHYKRSKFLAEQ  150 (328)
T ss_pred             cc--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCC--CcccccChHHHHHHHHHH
Confidence            43  23446778899999999999999999888 9999999999985 334566776421  122234689999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +++.++.+.+++++++||+++|||+.....  ....++.....+... ...  +...+|+|++|+|++++.++
T Consensus       151 ~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~--~~~~~~~~~~~~~~~-~~~--~~~~~~i~v~D~a~a~~~~~  218 (328)
T TIGR03466       151 AALEMAAEKGLPVVIVNPSTPIGPRDIKPT--PTGRIIVDFLNGKMP-AYV--DTGLNLVHVDDVAEGHLLAL  218 (328)
T ss_pred             HHHHHHHhcCCCEEEEeCCccCCCCCCCCC--cHHHHHHHHHcCCCc-eee--CCCcceEEHHHHHHHHHHHH
Confidence            999998888999999999999999854221  223333333433322 222  23468999999999988764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.96  E-value=1.4e-28  Score=199.73  Aligned_cols=220  Identities=28%  Similarity=0.365  Sum_probs=174.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc-----cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      +++.+++||||+||+|++|+++|++++ ..++.+++........ ..+..  .+.+++++.+|+.+..     +.++ .|
T Consensus         2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~-~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~V   79 (361)
T KOG1430|consen    2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNL-PAELTGFRSGRVTVILGDLLDANSISNAFQGA-VV   79 (361)
T ss_pred             CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCcccccc-chhhhcccCCceeEEecchhhhhhhhhhccCc-eE
Confidence            356789999999999999999999998 3348888875542221 11111  2568999999999987     6677 77


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCC-CCCCCCCcCCCCCCCCCCchHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~-~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      +|+|+...+.....+.+..+++|+.++.+++++|.+.++ ++||+||..|...... ...+|+.+-   |......|+.|
T Consensus        80 vh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~---p~~~~d~Y~~s  156 (361)
T KOG1430|consen   80 VHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPY---PLKHIDPYGES  156 (361)
T ss_pred             EEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCCC---ccccccccchH
Confidence            777776666566667899999999999999999999999 9999999998776555 333444311   23344689999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |..+|+++.+......+..+++||+.||||+.    ...++.+...+..+......+++....++++++.++.+++.+.
T Consensus       157 Ka~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd----~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~  231 (361)
T KOG1430|consen  157 KALAEKLVLEANGSDDLYTCALRPPGIYGPGD----KRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAA  231 (361)
T ss_pred             HHHHHHHHHHhcCCCCeeEEEEccccccCCCC----ccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHH
Confidence            99999999888765578999999999999994    3477888888899998888888888899999999999887653

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.96  E-value=7.3e-29  Score=197.65  Aligned_cols=214  Identities=23%  Similarity=0.260  Sum_probs=129.7

Q ss_pred             EEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCC--Ccchhhhcc------------CCCceeEeecccCccc-------
Q 025022           37 VTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTG--SKDNLRKWI------------GHPRFELIRHDVTEPL-------   94 (259)
Q Consensus        37 ItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~--~~~~~~~~~------------~~~~~~~~~~dl~~~~-------   94 (259)
                      |||||||||.+|+++|++.+.. .|+++.|..+.  ..+++...+            ...+++++.+|++++.       
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            7999999999999999999862 49999997543  122231111            1469999999999976       


Q ss_pred             ----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCC-----Cc
Q 025022           95 ----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDES-----YW  164 (259)
Q Consensus        95 ----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~-----~~  164 (259)
                          ..++|+|||+|+..+.   ..+.....+.|+.+++++++.|..... +|+|+||..+.+.... ...|.     ..
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~~---~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~-~~~~~~~~~~~~  156 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVNF---NAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPG-TIEEKVYPEEED  156 (249)
T ss_dssp             HHHHHHH--EEEE--SS-SB---S-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TT-T--SSS-HHH--
T ss_pred             hhccccccceeeecchhhhh---cccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCC-cccccccccccc
Confidence                3579999999997753   446667889999999999999997665 9999999555443322 22111     11


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC-C-CccHHHHHHHHH-HcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI-D-DGRVVSNFIAQA-IRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~-~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~  241 (259)
                      .........++|..||+.+|++++.++++.+++++|+||+.++|..... . .......++... ..+......+.....
T Consensus       157 ~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  236 (249)
T PF07993_consen  157 DLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDPDAR  236 (249)
T ss_dssp             EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB---TT
T ss_pred             cchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCCCce
Confidence            1111344557999999999999999998889999999999999943322 1 223344444444 344433355555567


Q ss_pred             eeeeeHHHHHHHH
Q 025022          242 RSFCYVSDMVCKS  254 (259)
Q Consensus       242 ~~~i~v~D~a~~~  254 (259)
                      .++++||.+|++|
T Consensus       237 ~d~vPVD~va~aI  249 (249)
T PF07993_consen  237 LDLVPVDYVARAI  249 (249)
T ss_dssp             --EEEHHHHHHHH
T ss_pred             EeEECHHHHHhhC
Confidence            9999999999986

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.96  E-value=3.4e-28  Score=192.18  Aligned_cols=199  Identities=29%  Similarity=0.373  Sum_probs=151.9

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCcee----EeecccCccc-----cC--CcCE
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFE----LIRHDVTEPL-----LI--EVDQ  100 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~----~~~~dl~~~~-----~~--~~d~  100 (259)
                      ||||||+|.||+.|+++|++.+...++++++++....+...++   ....++.    .+.+|+.|.+     +.  ++|+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi   80 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI   80 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence            7999999999999999999999877999998755433322222   2233444    3578999987     44  8999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHH
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      |||+|+.-+....+.++.+.+.+|+.|+.+++++|.++++ +||++||..                   ...|.+.||+|
T Consensus        81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDK-------------------Av~PtnvmGat  141 (293)
T PF02719_consen   81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDK-------------------AVNPTNVMGAT  141 (293)
T ss_dssp             EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECG-------------------CSS--SHHHHH
T ss_pred             EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-------------------cCCCCcHHHHH
Confidence            9999999887778899999999999999999999999999 999999965                   45677899999


Q ss_pred             HHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHh
Q 025022          180 KRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCF  256 (259)
Q Consensus       180 K~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  256 (259)
                      |..+|+++..+....   +.+++++|.|||.|..     ++.++.|.+.+.+|+|+.+. +++..|=|+.+++.++.++.
T Consensus       142 KrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~-----GSVip~F~~Qi~~g~PlTvT-~p~mtRffmti~EAv~Lvl~  215 (293)
T PF02719_consen  142 KRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR-----GSVIPLFKKQIKNGGPLTVT-DPDMTRFFMTIEEAVQLVLQ  215 (293)
T ss_dssp             HHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT-----TSCHHHHHHHHHTTSSEEEC-ETT-EEEEE-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC-----CcHHHHHHHHHHcCCcceeC-CCCcEEEEecHHHHHHHHHH
Confidence            999999999987655   6899999999999965     56999999999999999884 55778889999999998876


Q ss_pred             hh
Q 025022          257 LA  258 (259)
Q Consensus       257 ~l  258 (259)
                      +.
T Consensus       216 a~  217 (293)
T PF02719_consen  216 AA  217 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=3.7e-28  Score=190.71  Aligned_cols=220  Identities=28%  Similarity=0.429  Sum_probs=176.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh---cc-CCCceeEeecccCccc-------cCCcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK---WI-GHPRFELIRHDVTEPL-------LIEVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~~~dl~~~~-------~~~~d~  100 (259)
                      .++||||||+||||+|.+.+|+++|+. |++++.........++.   +. +..++.++.+|++|..       ..++|.
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~-v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~   80 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYG-VVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDA   80 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCc-EEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCce
Confidence            478999999999999999999999999 99999766554433332   21 2367999999999988       456999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCC-CCCchHH
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG-VRSCYDE  178 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~-~~~~Y~~  178 (259)
                      |+|.|+.........++..+...|+.++.++++.|+++++ .+|+.||+.+||.+...|++|+.     +.. |.++|+.
T Consensus        81 V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~-----~t~~p~~pyg~  155 (343)
T KOG1371|consen   81 VMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEED-----PTDQPTNPYGK  155 (343)
T ss_pred             EEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcC-----CCCCCCCcchh
Confidence            9999998776666677889999999999999999999999 99999999999999999999987     665 8899999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeccccC--CCCCCCC------ccHHHHHHHHHH--------cCCCeEEecCCceee
Q 025022          179 GKRVAETLMFDYHRQHGIEIRIARIFNTYG--PRMNIDD------GRVVSNFIAQAI--------RGEPLTVQAPGTQTR  242 (259)
Q Consensus       179 sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g--~~~~~~~------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  242 (259)
                      +|...|..+.++.+..+..++.||.++++|  |......      .+..+.....+.        -+.+... -+|+..+
T Consensus       156 tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t-~dgt~vr  234 (343)
T KOG1371|consen  156 TKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTT-IDGTIVR  234 (343)
T ss_pred             hhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccc-cCCCeee
Confidence            999999999999988889999999999999  4422211      123322222111        2233332 2558899


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      +++|+-|+|+.+..++
T Consensus       235 dyi~v~Dla~~h~~al  250 (343)
T KOG1371|consen  235 DYIHVLDLADGHVAAL  250 (343)
T ss_pred             cceeeEehHHHHHHHh
Confidence            9999999999987654

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.7e-27  Score=198.62  Aligned_cols=207  Identities=29%  Similarity=0.381  Sum_probs=177.7

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc---hhhhccCCCceeEeecccCccc-----cC-
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWIGHPRFELIRHDVTEPL-----LI-   96 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~dl~~~~-----~~-   96 (259)
                      ......+|+|+||||+|.||+.+++++++.+.++++.+++++.+..+   .++..++..++.++-+|+.|.+     +. 
T Consensus       244 i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~  323 (588)
T COG1086         244 IGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEG  323 (588)
T ss_pred             HHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhc
Confidence            34445789999999999999999999999999889999987655332   2333333478889999999998     44 


Q ss_pred             -CcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC
Q 025022           97 -EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS  174 (259)
Q Consensus        97 -~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (259)
                       ++|+|||+|+..+..-.+.++.+.+.+|+.|+.|++++|.++++ +||.+||..                   ..+|.+
T Consensus       324 ~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDK-------------------AV~PtN  384 (588)
T COG1086         324 HKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDK-------------------AVNPTN  384 (588)
T ss_pred             CCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCc-------------------ccCCch
Confidence             49999999999888788999999999999999999999999999 999999964                   567788


Q ss_pred             chHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV  251 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  251 (259)
                      .||.+|..+|+.+..+....   +.+++.+|.|||.|..     ++.++-+.+.+.+|+++.+ .+++-.|=|..++|.+
T Consensus       385 vmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr-----GSViPlFk~QI~~GgplTv-Tdp~mtRyfMTI~EAv  458 (588)
T COG1086         385 VMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR-----GSVIPLFKKQIAEGGPLTV-TDPDMTRFFMTIPEAV  458 (588)
T ss_pred             HhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC-----CCCHHHHHHHHHcCCCccc-cCCCceeEEEEHHHHH
Confidence            99999999999999987643   3899999999999975     5699999999999999887 5678888999999999


Q ss_pred             HHHHhh
Q 025022          252 CKSCFL  257 (259)
Q Consensus       252 ~~~~~~  257 (259)
                      +.++.+
T Consensus       459 ~LVlqA  464 (588)
T COG1086         459 QLVLQA  464 (588)
T ss_pred             HHHHHH
Confidence            988765

>PLN00016 RNA-binding protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=195.82  Aligned_cols=194  Identities=20%  Similarity=0.290  Sum_probs=150.2

Q ss_pred             CCCEEEEE----cCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcch-------hhhccCCCceeEeecccCccc----c
Q 025022           31 SNMRILVT----GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-------LRKWIGHPRFELIRHDVTEPL----L   95 (259)
Q Consensus        31 ~~~~vlIt----GatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-------~~~~~~~~~~~~~~~dl~~~~----~   95 (259)
                      .+++|+||    |||||||++|+++|+++|++ |+++.|+.......       +.. +...+++++.+|+.+..    .
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~-V~~l~R~~~~~~~~~~~~~~~~~~-l~~~~v~~v~~D~~d~~~~~~~  128 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHE-VTLFTRGKEPSQKMKKEPFSRFSE-LSSAGVKTVWGDPADVKSKVAG  128 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCE-EEEEecCCcchhhhccCchhhhhH-hhhcCceEEEecHHHHHhhhcc
Confidence            45789999    99999999999999999998 99999875432110       011 11235888999998743    3


Q ss_pred             CCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC
Q 025022           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS  174 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (259)
                      .++|+|||+++.                +..++.+++++|++.|+ +|||+||..+|+.....+..|+.     +..|..
T Consensus       129 ~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~-----~~~p~~  187 (378)
T PLN00016        129 AGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGD-----AVKPKA  187 (378)
T ss_pred             CCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCC-----cCCCcc
Confidence            579999998752                13457789999999999 99999999999976655666654     333322


Q ss_pred             chHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKS  254 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~  254 (259)
                          +|..+|.+++    +.+++++++||+++|||+...   .....++..+..+.++.+++++.+.++|+|++|+|+++
T Consensus       188 ----sK~~~E~~l~----~~~l~~~ilRp~~vyG~~~~~---~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai  256 (378)
T PLN00016        188 ----GHLEVEAYLQ----KLGVNWTSFRPQYIYGPGNNK---DCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMF  256 (378)
T ss_pred             ----hHHHHHHHHH----HcCCCeEEEeceeEECCCCCC---chHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHH
Confidence                7998988763    458999999999999997432   25556677778888888888888999999999999999


Q ss_pred             Hhhh
Q 025022          255 CFLA  258 (259)
Q Consensus       255 ~~~l  258 (259)
                      ..++
T Consensus       257 ~~~l  260 (378)
T PLN00016        257 ALVV  260 (378)
T ss_pred             HHHh
Confidence            8765

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=2.2e-26  Score=176.94  Aligned_cols=221  Identities=25%  Similarity=0.267  Sum_probs=186.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc-chh----hhccCCCceeEeecccCccc-------cCCcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNL----RKWIGHPRFELIRHDVTEPL-------LIEVD   99 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~----~~~~~~~~~~~~~~dl~~~~-------~~~~d   99 (259)
                      +|+.||||-||+-|.+|++.|++.|+. |+++.|+..... .++    .......++.++.+|++|..       ..++|
T Consensus         2 ~K~ALITGITGQDGsYLa~lLLekGY~-VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd   80 (345)
T COG1089           2 GKVALITGITGQDGSYLAELLLEKGYE-VHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD   80 (345)
T ss_pred             CceEEEecccCCchHHHHHHHHhcCcE-EEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence            578999999999999999999999999 999998754433 221    11123456899999999988       56899


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC---eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCch
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY  176 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y  176 (259)
                      -|+|+|+.++...++..+....+++..|+.+++++.+..+.   ||.+.||+..||.....|.+|+.     |..|.++|
T Consensus        81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~T-----PFyPrSPY  155 (345)
T COG1089          81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETT-----PFYPRSPY  155 (345)
T ss_pred             hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCC-----CCCCCCHH
Confidence            99999999988888899999999999999999999998653   99999999999999999999997     99999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeE-EecCCceeeeeeeHHHHHHHH
Q 025022          177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID-DGRVVSNFIAQAIRGEPLT-VQAPGTQTRSFCYVSDMVCKS  254 (259)
Q Consensus       177 ~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~D~a~~~  254 (259)
                      +.+|..+.+....+.+.+|+-.+.=...|.-+|..... ..+-+..-+.+++.|..-. ..|+-+..+||-|..|.++++
T Consensus       156 AvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~m  235 (345)
T COG1089         156 AVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAM  235 (345)
T ss_pred             HHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHHH
Confidence            99999999999999999999888888888888876543 2445555666666665433 358899999999999999999


Q ss_pred             Hhhh
Q 025022          255 CFLA  258 (259)
Q Consensus       255 ~~~l  258 (259)
                      +.++
T Consensus       236 wlmL  239 (345)
T COG1089         236 WLML  239 (345)
T ss_pred             HHHH
Confidence            9875

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.95  E-value=7e-26  Score=184.87  Aligned_cols=206  Identities=17%  Similarity=0.145  Sum_probs=142.7

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCcc--c
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI--F  112 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~~--~  112 (259)
                      ||||||+||||+++++.|+++|++ |++++|+.........     ..+.....+.....+.++|+|||+|+.....  .
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~~~~   74 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHE-VTILTRSPPAGANTKW-----EGYKPWAPLAESEALEGADAVINLAGEPIADKRW   74 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCE-EEEEeCCCCCCCcccc-----eeeecccccchhhhcCCCCEEEECCCCCcccccC
Confidence            689999999999999999999998 9999987654322110     0111111111122267899999999865421  1


Q ss_pred             cccChhHHHHHhhhhHHHHHHHHHHhCC---eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHH
Q 025022          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD  189 (259)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~  189 (259)
                      .......++++|+.++.+++++|++.++   ++|++||..+|+.....+++|+.     +..+...|+..+...|..+..
T Consensus        75 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~-----~~~~~~~~~~~~~~~e~~~~~  149 (292)
T TIGR01777        75 TEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEED-----SPAGDDFLAELCRDWEEAAQA  149 (292)
T ss_pred             CHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCccc-----CCCCCChHHHHHHHHHHHhhh
Confidence            1234567788999999999999999875   56667777789876666777765     344445566666666766554


Q ss_pred             HHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          190 YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       190 ~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      + .+.+++++++||+++|||+..     .+..+.......... .+++++..++|+|++|+|+++..++
T Consensus       150 ~-~~~~~~~~ilR~~~v~G~~~~-----~~~~~~~~~~~~~~~-~~g~~~~~~~~i~v~Dva~~i~~~l  211 (292)
T TIGR01777       150 A-EDLGTRVVLLRTGIVLGPKGG-----ALAKMLPPFRLGLGG-PLGSGRQWFSWIHIEDLVQLILFAL  211 (292)
T ss_pred             c-hhcCCceEEEeeeeEECCCcc-----hhHHHHHHHhcCccc-ccCCCCcccccEeHHHHHHHHHHHh
Confidence            4 346899999999999999632     333433322222111 2467788999999999999998775

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02778 3,5-epimerase/4-reductase

Probab=99.94  E-value=2.5e-25  Score=181.57  Aligned_cols=192  Identities=19%  Similarity=0.254  Sum_probs=138.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~  110 (259)
                      ..|+||||||+||||++|++.|+++|++ |+...++.. .            ...+..|+.+   .++|+|||+||....
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~-V~~~~~~~~-~------------~~~v~~~l~~---~~~D~ViH~Aa~~~~   70 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGID-FHYGSGRLE-N------------RASLEADIDA---VKPTHVFNAAGVTGR   70 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCE-EEEecCccC-C------------HHHHHHHHHh---cCCCEEEECCcccCC
Confidence            4589999999999999999999999998 765432110 0            1112223322   368999999997653


Q ss_pred             c---ccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCC------CCCCCCCCcCCCCCCCCCCchHHHHH
Q 025022          111 I---FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL------VHPQDESYWGNVNPIGVRSCYDEGKR  181 (259)
Q Consensus       111 ~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~------~~~~~e~~~~~~~~~~~~~~Y~~sK~  181 (259)
                      .   .+..++...+++|+.++.+++++|++.+++++++||.++|+...      ..+++|++    .+..+.+.|+.+|.
T Consensus        71 ~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~----~p~~~~s~Yg~sK~  146 (298)
T PLN02778         71 PNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEED----TPNFTGSFYSKTKA  146 (298)
T ss_pred             CCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCC----CCCCCCCchHHHHH
Confidence            2   23467888999999999999999999988778888888886532      12356554    13345578999999


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       182 ~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ++|.++..++     +..++|+..++|++..     ....++..+..+.++...+     .+|+|++|++++++.++
T Consensus       147 ~~E~~~~~y~-----~~~~lr~~~~~~~~~~-----~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~al~~~l  208 (298)
T PLN02778        147 MVEELLKNYE-----NVCTLRVRMPISSDLS-----NPRNFITKITRYEKVVNIP-----NSMTILDELLPISIEMA  208 (298)
T ss_pred             HHHHHHHHhh-----ccEEeeecccCCcccc-----cHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHHHHHHH
Confidence            9999998765     3578888887876421     2234667777777655443     37999999999998765

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.94  E-value=8.9e-26  Score=203.57  Aligned_cols=214  Identities=27%  Similarity=0.277  Sum_probs=153.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHH--hcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc----------cCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLM--ENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL----------LIE   97 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~--~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~----------~~~   97 (259)
                      |+|||||||||||++|+++|+  +.|++ |++++|+...  ..+...   ....+++++.+|+.+.+          +.+
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~-V~~l~R~~~~--~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREAT-VHVLVRRQSL--SRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCE-EEEEECcchH--HHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcC
Confidence            689999999999999999999  47887 9999985322  122111   11247899999998843          368


Q ss_pred             cCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCch
Q 025022           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY  176 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y  176 (259)
                      +|+|||+||....   ........++|+.++.+++++|++.++ +|||+||..+|+.... ..+|+.+..  +..+.+.|
T Consensus        78 ~D~Vih~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~-~~~e~~~~~--~~~~~~~Y  151 (657)
T PRK07201         78 IDHVVHLAAIYDL---TADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG-VFREDDFDE--GQGLPTPY  151 (657)
T ss_pred             CCEEEECceeecC---CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC-ccccccchh--hcCCCCch
Confidence            9999999996542   234567789999999999999999988 9999999999986432 344543221  23345679


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCc-----cHHHHHHHHHHc-CCCeEEecCCceeeeeeeHHHH
Q 025022          177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG-----RVVSNFIAQAIR-GEPLTVQAPGTQTRSFCYVSDM  250 (259)
Q Consensus       177 ~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~D~  250 (259)
                      +.+|..+|++++.   ..+++++++||+++|||.......     ..+..++..... ....+..+.+....+++|++|+
T Consensus       152 ~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddv  228 (657)
T PRK07201        152 HRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYV  228 (657)
T ss_pred             HHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHH
Confidence            9999999999864   358999999999999986432111     112222322211 1223344555667899999999


Q ss_pred             HHHHHhhh
Q 025022          251 VCKSCFLA  258 (259)
Q Consensus       251 a~~~~~~l  258 (259)
                      ++++..++
T Consensus       229 a~ai~~~~  236 (657)
T PRK07201        229 ADALDHLM  236 (657)
T ss_pred             HHHHHHHh
Confidence            99998764

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.94  E-value=1.4e-25  Score=189.20  Aligned_cols=193  Identities=20%  Similarity=0.203  Sum_probs=147.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc--hhhhc-cCCCceeEeecccCccc-----cC----C
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NLRKW-IGHPRFELIRHDVTEPL-----LI----E   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~~~-~~~~~~~~~~~dl~~~~-----~~----~   97 (259)
                      ..+|+|+||||||+||++++++|+++|++ |+++.|+......  ..... ....+++++.+|+++.+     +.    +
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~  136 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP  136 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence            45789999999999999999999999998 9999986543211  00100 11247889999999987     22    6


Q ss_pred             cCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCch
Q 025022           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY  176 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y  176 (259)
                      +|+||||++....     .....+++|+.++.+++++|++.++ +||++||..++.                   |...|
T Consensus       137 ~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~-------------------p~~~~  192 (390)
T PLN02657        137 VDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK-------------------PLLEF  192 (390)
T ss_pred             CcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC-------------------cchHH
Confidence            9999999874321     1234567899999999999999998 999999987653                   12358


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee-eeeeHHHHHHHHH
Q 025022          177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR-SFCYVSDMVCKSC  255 (259)
Q Consensus       177 ~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~D~a~~~~  255 (259)
                      ..+|...|+.++.  ...+++++++||+++||+.         ..++..+..+.++.++|+++..+ ++||++|+|+++.
T Consensus       193 ~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~---------~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~  261 (390)
T PLN02657        193 QRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL---------GGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIA  261 (390)
T ss_pred             HHHHHHHHHHHHh--ccCCCCEEEEccHHHhccc---------HHHHHhhccCCceEEecCCcccccCceeHHHHHHHHH
Confidence            8899999988755  3468999999999999743         23455666788888888887654 6899999999988


Q ss_pred             hhh
Q 025022          256 FLA  258 (259)
Q Consensus       256 ~~l  258 (259)
                      .++
T Consensus       262 ~~~  264 (390)
T PLN02657        262 DCV  264 (390)
T ss_pred             HHH
Confidence            764

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.94  E-value=1.4e-25  Score=188.60  Aligned_cols=217  Identities=23%  Similarity=0.273  Sum_probs=153.7

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCCCCCc--chhhhcc--------C-C-CceeEeecccCccc-----
Q 025022           34 RILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSK--DNLRKWI--------G-H-PRFELIRHDVTEPL-----   94 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~--~~~~~~~--------~-~-~~~~~~~~dl~~~~-----   94 (259)
                      +|+|||||||||++|+++|+++|  .+ |+++.|+.+...  ++++..+        . . .+++++.+|++++.     
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~-V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~   79 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAK-VICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD   79 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCE-EEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence            58999999999999999999998  55 999988654211  1111110        0 0 47899999987653     


Q ss_pred             ------cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           95 ------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        95 ------~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                            ..++|+|||+|+....   ........+.|+.++.+++++|.+.+. +|+|+||..+|+.....+..|+.....
T Consensus        80 ~~~~~~~~~~d~vih~a~~~~~---~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~  156 (367)
T TIGR01746        80 AEWERLAENVDTIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVT  156 (367)
T ss_pred             HHHHHHHhhCCEEEeCCcEecc---CCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCccccccccc
Confidence                  4579999999986542   334667788999999999999999888 799999999997644333333332111


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCc-eeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIRGEPLTVQAPGT-QTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  244 (259)
                      ....+.+.|+.+|..+|.+++.+... +++++++||+.++|+.....  ...++..++.........   +... ...+|
T Consensus       157 ~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~  232 (367)
T TIGR01746       157 PPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAY---PDSPELTEDL  232 (367)
T ss_pred             cccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCC---CCCCccccCc
Confidence            12234568999999999999887654 89999999999999743221  122444455444433322   2222 35789


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ++++|++++++.++
T Consensus       233 ~~vddva~ai~~~~  246 (367)
T TIGR01746       233 TPVDYVARAIVALS  246 (367)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999999998764

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.94  E-value=1.3e-25  Score=185.25  Aligned_cols=184  Identities=17%  Similarity=0.172  Sum_probs=138.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~~  107 (259)
                      |+|+|||||||+|++++++|+++|++ |+++.|+..... .+    ...+++++.+|+.+.+     +.++|+|||+++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~-V~~l~R~~~~~~-~l----~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~   74 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQ-VRCLVRNLRKAS-FL----KEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS   74 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCe-EEEEEcChHHhh-hH----hhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence            68999999999999999999999998 999998643221 11    1237899999999876     6789999998763


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL  186 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~  186 (259)
                      .     ..+.....++|+.++.+++++|++.++ +|||+||.....                  .+..+|..+|...|..
T Consensus        75 ~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~------------------~~~~~~~~~K~~~e~~  131 (317)
T CHL00194         75 R-----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ------------------YPYIPLMKLKSDIEQK  131 (317)
T ss_pred             C-----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc------------------cCCChHHHHHHHHHHH
Confidence            2     223455678899999999999999999 999999864321                  1124588899999887


Q ss_pred             HHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       187 ~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +    ++.+++++++||+.+|+..        +..+......+.+..+ +.+...++|+|++|+|+++..++
T Consensus       132 l----~~~~l~~tilRp~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l  190 (317)
T CHL00194        132 L----KKSGIPYTIFRLAGFFQGL--------ISQYAIPILEKQPIWI-TNESTPISYIDTQDAAKFCLKSL  190 (317)
T ss_pred             H----HHcCCCeEEEeecHHhhhh--------hhhhhhhhccCCceEe-cCCCCccCccCHHHHHHHHHHHh
Confidence            7    4568999999999888632        1222222233445444 34567789999999999998765

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.93  E-value=2.2e-25  Score=179.24  Aligned_cols=214  Identities=20%  Similarity=0.194  Sum_probs=153.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC--cchhhhcc---------CCCceeEeecccCccc-------
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNLRKWI---------GHPRFELIRHDVTEPL-------   94 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~~~~---------~~~~~~~~~~dl~~~~-------   94 (259)
                      ++|++||||||+|.+|+.+|+.+-.-+|+++.|.++..  ..++...+         ...+++.+.+|+.++.       
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            57999999999999999999998664499999976532  12232222         2368999999999877       


Q ss_pred             ----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCC----CCcC
Q 025022           95 ----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDE----SYWG  165 (259)
Q Consensus        95 ----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e----~~~~  165 (259)
                          ...+|.|||+|+..+   +-..+.++...|+.|+..+++.|...+. .++|+||++++........++    .+..
T Consensus        81 ~~~La~~vD~I~H~gA~Vn---~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~  157 (382)
T COG3320          81 WQELAENVDLIIHNAALVN---HVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPT  157 (382)
T ss_pred             HHHHhhhcceEEecchhhc---ccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccc
Confidence                356999999998764   3456778889999999999999998877 799999999876533222222    1211


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                      ......+.++|+.||+++|.+++..... |++++|+|||++.|+.....  ...++..|+....+-..++   ......+
T Consensus       158 ~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P---~~~~~~~  233 (382)
T COG3320         158 RNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAP---DSEYSLD  233 (382)
T ss_pred             ccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCC---Ccccchh
Confidence            1113346689999999999999999776 99999999999999876332  2336666666555433322   2233444


Q ss_pred             eeeHHHHHHH
Q 025022          244 FCYVSDMVCK  253 (259)
Q Consensus       244 ~i~v~D~a~~  253 (259)
                      .+.++.++++
T Consensus       234 ~~p~~~v~~~  243 (382)
T COG3320         234 MLPVDHVARA  243 (382)
T ss_pred             hCccceeeEE
Confidence            5554444443

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.93  E-value=4.5e-24  Score=164.32  Aligned_cols=201  Identities=20%  Similarity=0.242  Sum_probs=143.0

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccC-CcCEEEEccCCCCccc-
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-EVDQIYHLACPASPIF-  112 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~-~~d~vi~~a~~~~~~~-  112 (259)
                      |+||||||+||++|+..|.+.|+. |++++|+..+....+.     ..+.  ..+-.+.... ++|+|||+||..-... 
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~-v~iltR~~~~~~~~~~-----~~v~--~~~~~~~~~~~~~DavINLAG~~I~~rr   72 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQ-VTILTRRPPKASQNLH-----PNVT--LWEGLADALTLGIDAVINLAGEPIAERR   72 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCe-EEEEEcCCcchhhhcC-----cccc--ccchhhhcccCCCCEEEECCCCcccccc
Confidence            689999999999999999999999 9999997765543332     1222  1222222222 7999999999776543 


Q ss_pred             -cccChhHHHHHhhhhHHHHHHHHHHhCC---eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHH--HHH
Q 025022          113 -YKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA--ETL  186 (259)
Q Consensus       113 -~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~--e~~  186 (259)
                       ..+..+...+..+..|..+.++..+...   .+|.-|.+..||...+..++|++     ++.  +.+ .++.+.  |..
T Consensus        73 Wt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~-----~~g--~~F-la~lc~~WE~~  144 (297)
T COG1090          73 WTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEES-----PPG--DDF-LAQLCQDWEEE  144 (297)
T ss_pred             CCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCC-----CCC--CCh-HHHHHHHHHHH
Confidence             2344677889999999999998875543   67777777889999888999874     221  222 223332  332


Q ss_pred             HHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       187 ~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ... ++..+.+++.+|.|+|.++.     +.++..|......+.--+ +|+|.++++|||++|+++++.+++
T Consensus       145 a~~-a~~~gtRvvllRtGvVLs~~-----GGaL~~m~~~fk~glGG~-~GsGrQ~~SWIhieD~v~~I~fll  209 (297)
T COG1090         145 ALQ-AQQLGTRVVLLRTGVVLSPD-----GGALGKMLPLFKLGLGGK-LGSGRQWFSWIHIEDLVNAILFLL  209 (297)
T ss_pred             Hhh-hhhcCceEEEEEEEEEecCC-----CcchhhhcchhhhccCCc-cCCCCceeeeeeHHHHHHHHHHHH
Confidence            222 24458999999999999976     336666666554332212 699999999999999999999875

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.3e-24  Score=159.17  Aligned_cols=207  Identities=25%  Similarity=0.358  Sum_probs=166.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIY  102 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi  102 (259)
                      +++|+|||++|-+|++|.+.+.+.|..  .-+.....                    .+|+++..       ..++..||
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk--------------------d~DLt~~a~t~~lF~~ekPthVI   60 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK--------------------DADLTNLADTRALFESEKPTHVI   60 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc--------------------cccccchHHHHHHHhccCCceee
Confidence            479999999999999999999998873  23333221                    23444433       45789999


Q ss_pred             EccCCCCccc-cccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          103 HLACPASPIF-YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       103 ~~a~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      |+|+....-. ....+.+.++.|++..-|++..|.+.|+ ++++..|.++|.+-...|++|+...+-+|.+...+|+.+|
T Consensus        61 hlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAK  140 (315)
T KOG1431|consen   61 HLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAK  140 (315)
T ss_pred             ehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHH
Confidence            9998655422 2345678899999999999999999999 9999999999999888999998766554445556899999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--CCccHHHHHHHHHH----cCC-CeEEecCCceeeeeeeHHHHHHH
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI--DDGRVVSNFIAQAI----RGE-PLTVQAPGTQTRSFCYVSDMVCK  253 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~--~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~i~v~D~a~~  253 (259)
                      .++.-.-+.++.++|-.++.+-|.++|||..+.  .++..++.+++++.    .+. .+.+||.|...|.|+|.+|+|++
T Consensus       141 r~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l  220 (315)
T KOG1431|consen  141 RMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADL  220 (315)
T ss_pred             HHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHH
Confidence            988888899999999999999999999998643  44557888877654    333 78899999999999999999999


Q ss_pred             HHhhh
Q 025022          254 SCFLA  258 (259)
Q Consensus       254 ~~~~l  258 (259)
                      +++++
T Consensus       221 ~i~vl  225 (315)
T KOG1431|consen  221 FIWVL  225 (315)
T ss_pred             HHHHH
Confidence            99875

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.92  E-value=1.1e-23  Score=169.36  Aligned_cols=209  Identities=17%  Similarity=0.035  Sum_probs=143.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||.++++.|+++|++ |+++.|+.....+..+.... ..++.++.+|+++.+            .
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAA-VAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            356789999999999999999999999998 88888865433322222111 235778999999877            2


Q ss_pred             CCcCEEEEccCCCCccc----cccChhHHHHHhhhh----HHHHHHHH-HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIG----TLNMLGLA-KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~----~~~l~~~~-~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|+|||+||......    .....+..+++|+.+    +..+++.+ ++.+. +||++||...+.             
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~-------------  149 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHE-------------  149 (262)
T ss_pred             CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcC-------------
Confidence            46999999999754321    223456778899999    55556666 55556 999999975432             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHc---CCCeEEecCCc
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR---GEPLTVQAPGT  239 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  239 (259)
                         ...+...|+.+|.+.+.+++.++++   .+++++++||+.+++|....    .+.........   .....+++.+.
T Consensus       150 ---~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
T PRK13394        150 ---ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDK----QIPEQAKELGISEEEVVKKVMLGKT  222 (262)
T ss_pred             ---CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhh----hhHhhhhccCCChHHHHHHHHhcCC
Confidence               2233467999999999999988766   47999999999999986321    11111100000   00000122233


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ..++|++++|+++++++++
T Consensus       223 ~~~~~~~~~dva~a~~~l~  241 (262)
T PRK13394        223 VDGVFTTVEDVAQTVLFLS  241 (262)
T ss_pred             CCCCCCCHHHHHHHHHHHc
Confidence            4568999999999998875

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.91  E-value=2.9e-23  Score=181.06  Aligned_cols=222  Identities=18%  Similarity=0.155  Sum_probs=156.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCCCCCC--cchhh-hcc------------C-------CCceeE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGS--KDNLR-KWI------------G-------HPRFEL   85 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~--~~~~~-~~~------------~-------~~~~~~   85 (259)
                      .++++|+|||||||||++|+++|++.+.  ..|+++.|.++..  .++++ ++.            +       ..++..
T Consensus       117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~  196 (605)
T PLN02503        117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP  196 (605)
T ss_pred             hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence            3579999999999999999999998764  3589999865432  22221 110            0       247889


Q ss_pred             eecccCccc-----------cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeec
Q 025022           86 IRHDVTEPL-----------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYG  152 (259)
Q Consensus        86 ~~~dl~~~~-----------~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~  152 (259)
                      +.+|+++..           ..++|+|||+|+....   ..+++..+++|+.++.+++++|++.+ . +|||+||.++|+
T Consensus       197 v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f---~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG  273 (605)
T PLN02503        197 VVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTF---DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNG  273 (605)
T ss_pred             EEeeCCCcccCCCHHHHHHHHhcCCEEEECcccccc---ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeec
Confidence            999999873           3569999999987642   35678899999999999999999875 3 899999999998


Q ss_pred             CCCCCCCCCCCcCC----------------------------------C---C-----------------CCCCCCchHH
Q 025022          153 DPLVHPQDESYWGN----------------------------------V---N-----------------PIGVRSCYDE  178 (259)
Q Consensus       153 ~~~~~~~~e~~~~~----------------------------------~---~-----------------~~~~~~~Y~~  178 (259)
                      ...+ .+.|..+..                                  .   .                 .....+.|..
T Consensus       274 ~~~G-~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~  352 (605)
T PLN02503        274 QRQG-RIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVF  352 (605)
T ss_pred             CCCC-eeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHH
Confidence            7532 333322210                                  0   0                 0122378999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcc-----HHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHH
Q 025022          179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR-----VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCK  253 (259)
Q Consensus       179 sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  253 (259)
                      +|+.+|++++...  .+++++|+||+.|.+....|..++     .....+..+..|.--.+.++++...|+|+||.++.+
T Consensus       353 TK~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna  430 (605)
T PLN02503        353 TKAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNA  430 (605)
T ss_pred             HHHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHH
Confidence            9999999998654  379999999999954222211110     111111122244433367888999999999999999


Q ss_pred             HHhh
Q 025022          254 SCFL  257 (259)
Q Consensus       254 ~~~~  257 (259)
                      ++.+
T Consensus       431 ~i~a  434 (605)
T PLN02503        431 TLAA  434 (605)
T ss_pred             HHHH
Confidence            9876

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.90  E-value=6.2e-23  Score=156.24  Aligned_cols=174  Identities=28%  Similarity=0.382  Sum_probs=133.4

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccCCCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPAS  109 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~~~~  109 (259)
                      |+|+||||++|+.++++|+++|++ |+++.|++.+..+       ..+++++.+|+.+.+     +.++|+||++++...
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~-V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHE-VTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSE-EEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCE-EEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence            799999999999999999999988 9999997553322       468999999999987     779999999997543


Q ss_pred             ccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHH
Q 025022          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF  188 (259)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~  188 (259)
                      .             +...+.++++++++.++ ++|++||..+|.........+       .......|...|...|+.+ 
T Consensus        73 ~-------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~e~~~-  131 (183)
T PF13460_consen   73 K-------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDE-------DKPIFPEYARDKREAEEAL-  131 (183)
T ss_dssp             T-------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGG-------TCGGGHHHHHHHHHHHHHH-
T ss_pred             c-------------cccccccccccccccccccceeeeccccCCCCCcccccc-------cccchhhhHHHHHHHHHHH-
Confidence            2             17778899999999999 999999999888533321111       1111256788888887776 


Q ss_pred             HHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe-cCCceeeeeeeHHHHHHHHHhhh
Q 025022          189 DYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQ-APGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       189 ~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                         ++.+++|+++||+.+||+....                  ..+. ..+....++|+.+|+|++++.++
T Consensus       132 ---~~~~~~~~ivrp~~~~~~~~~~------------------~~~~~~~~~~~~~~i~~~DvA~~~~~~l  181 (183)
T PF13460_consen  132 ---RESGLNWTIVRPGWIYGNPSRS------------------YRLIKEGGPQGVNFISREDVAKAIVEAL  181 (183)
T ss_dssp             ---HHSTSEEEEEEESEEEBTTSSS------------------EEEESSTSTTSHCEEEHHHHHHHHHHHH
T ss_pred             ---HhcCCCEEEEECcEeEeCCCcc------------------eeEEeccCCCCcCcCCHHHHHHHHHHHh
Confidence               4568999999999999986321                  1111 13344568999999999998875

...

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.9e-22  Score=162.37  Aligned_cols=199  Identities=19%  Similarity=0.173  Sum_probs=138.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVD   99 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d   99 (259)
                      .|+++||||+|+||++++++|+++|+. |+++.|+..... .+.... ..++.++.+|+++.+            ..++|
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~-v~~~~r~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDR-VAATVRRPDALD-DLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRID   78 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            368999999999999999999999998 888888543221 122211 246889999999876            35689


Q ss_pred             EEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       100 ~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      +|||+||......    ...+.+..+++|+.++.++++++    ++.+. +||++||.....                +.
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~  142 (276)
T PRK06482         79 VVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI----------------AY  142 (276)
T ss_pred             EEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc----------------CC
Confidence            9999999765321    12345678889999999999987    45555 999999975332                22


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccc---cCCCCCCCC-----ccHHHHHHHHHHcCCCeEEecCCc
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNT---YGPRMNIDD-----GRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v---~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                      .+.+.|+.+|.+.|.+++.++.+   ++++++++||+.+   ||++.....     .......+........+.+     
T Consensus       143 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  217 (276)
T PRK06482        143 PGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGSFAI-----  217 (276)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhccCCC-----
Confidence            34568999999999999998766   5899999999987   555432110     0111111222222222222     


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                          +.+++|++++++.++
T Consensus       218 ----~~d~~~~~~a~~~~~  232 (276)
T PRK06482        218 ----PGDPQKMVQAMIASA  232 (276)
T ss_pred             ----CCCHHHHHHHHHHHH
Confidence                347899999988764

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.90  E-value=1.9e-22  Score=160.72  Aligned_cols=200  Identities=18%  Similarity=0.101  Sum_probs=142.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------   94 (259)
                      .+++|+|+||||+|+||++++++|+++|+. |+++.|+.....+.+....  ...++.++.+|+.+.+            
T Consensus         3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (249)
T PRK12825          3 SLMGRVALVTGAARGLGRAIALRLARAGAD-VVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVER   81 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHH
Confidence            356789999999999999999999999998 7776665433222222111  1246889999998877            


Q ss_pred             cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      ..++|+|||+||......    ....+...+++|+.++.++++.+    ++.+. ++|++||...+.             
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~-------------  148 (249)
T PRK12825         82 FGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLP-------------  148 (249)
T ss_pred             cCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCC-------------
Confidence            257899999999654322    23345678889999999998887    45556 999999987664             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +......|+.+|.+.+.+++.++++   .+++++++||+.++++.....   ........   ...       ....
T Consensus       149 ---~~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~---~~~~~~~~---~~~-------~~~~  212 (249)
T PRK12825        149 ---GWPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEAT---IEEAREAK---DAE-------TPLG  212 (249)
T ss_pred             ---CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccc---cchhHHhh---hcc-------CCCC
Confidence               2233467999999999999888765   589999999999999874321   11111111   001       1122


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++.+|+++++.+++
T Consensus       213 ~~~~~~dva~~~~~~~  228 (249)
T PRK12825        213 RSGTPEDIARAVAFLC  228 (249)
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            3889999999998775

>PRK05865 hypothetical protein; Provisional

Probab=99.90  E-value=2.4e-22  Score=180.79  Aligned_cols=165  Identities=21%  Similarity=0.298  Sum_probs=127.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~~  107 (259)
                      |+|+||||+||||++++++|+++|++ |++++|+....   .     ..++.++.+|+.+.+     +.++|+|||+|+.
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~-Vv~l~R~~~~~---~-----~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~   71 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHE-VVGIARHRPDS---W-----PSSADFIAADIRDATAVESAMTGADVVAHCAWV   71 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECCchhh---c-----ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCc
Confidence            68999999999999999999999998 99988853211   1     125788999999876     5789999999975


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL  186 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~  186 (259)
                      ...         .+++|+.++.+++++|++.++ +||++||..                              |.++|++
T Consensus        72 ~~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------------------------------K~aaE~l  112 (854)
T PRK05865         72 RGR---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH------------------------------QPRVEQM  112 (854)
T ss_pred             ccc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------------------------------HHHHHHH
Confidence            421         467899999999999999988 999999842                              7778877


Q ss_pred             HHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       187 ~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +    .+++++++++||+++|||+.        ..++..... .++...+++...++|+|++|+|++++.++
T Consensus       113 l----~~~gl~~vILRp~~VYGP~~--------~~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL  171 (854)
T PRK05865        113 L----ADCGLEWVAVRCALIFGRNV--------DNWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRAL  171 (854)
T ss_pred             H----HHcCCCEEEEEeceEeCCCh--------HHHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHH
Confidence            6    34689999999999999962        122322222 22222345566779999999999998764

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.90  E-value=3.1e-22  Score=159.85  Aligned_cols=201  Identities=19%  Similarity=0.104  Sum_probs=143.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++|+|+||||+|+||.+++++|+++|+. |+++.|+............. ...+.++.+|+.+.+            ..
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAE-VIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            56789999999999999999999999998 99999864332222222111 235888999999876            24


Q ss_pred             CcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|+|||++|....    .....++...++.|+.++.++++++.    +.+. +||++||...+..              
T Consensus        83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~--------------  148 (251)
T PRK12826         83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV--------------  148 (251)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc--------------
Confidence            79999999987653    12234557788999999999988774    3445 8999999865521              


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +......|+.+|.+.+.+++.++.+   .+++++++||++++||........   .+........++         ..+
T Consensus       149 -~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~  215 (251)
T PRK12826        149 -GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDA---QWAEAIAAAIPL---------GRL  215 (251)
T ss_pred             -CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCch---HHHHHHHhcCCC---------CCC
Confidence             2334467999999999999988765   489999999999999874322111   111222222221         147


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ++++|+|+++..++
T Consensus       216 ~~~~dva~~~~~l~  229 (251)
T PRK12826        216 GEPEDIAAAVLFLA  229 (251)
T ss_pred             cCHHHHHHHHHHHh
Confidence            89999999988764

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.90  E-value=6.5e-22  Score=158.91  Aligned_cols=200  Identities=16%  Similarity=0.109  Sum_probs=139.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||++++++|+++|++ |++++|+.. ..+..++... ...+.++.+|+++.+            ..
T Consensus         6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~-v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          6 FAGKVVVVTGAAQGIGRGVALRAAAEGAR-VVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFG   83 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            56789999999999999999999999998 888888532 1111111111 235778899999865            35


Q ss_pred             CcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|++||+||....     .....+.+..+++|+.++..+++.+    ++.+. +||++||...++.             
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-------------  150 (260)
T PRK12823         84 RIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI-------------  150 (260)
T ss_pred             CCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC-------------
Confidence            79999999985321     1223345677888988877655544    45555 9999999875531             


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC---------CCCccHHHHHHHHHHcCCCeEE
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMN---------IDDGRVVSNFIAQAIRGEPLTV  234 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~  234 (259)
                           +...|+.+|.+.+.+++.++.+.   ++++++++|+++++|...         .........+........++..
T Consensus       151 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (260)
T PRK12823        151 -----NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMKR  225 (260)
T ss_pred             -----CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCccc
Confidence                 12459999999999999998765   899999999999997411         0011123334444444433332


Q ss_pred             ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          235 QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       235 ~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                               +.+++|+++++++++
T Consensus       226 ---------~~~~~dva~~~~~l~  240 (260)
T PRK12823        226 ---------YGTIDEQVAAILFLA  240 (260)
T ss_pred             ---------CCCHHHHHHHHHHHc
Confidence                     347899999998875

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.90  E-value=2.5e-22  Score=161.05  Aligned_cols=206  Identities=19%  Similarity=0.110  Sum_probs=141.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      |++++++||||+|+||++++++|+++|++ |+++.|+............ ...++..+.+|+.+.+            ..
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAK-VVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG   80 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45789999999999999999999999998 9999887544332222211 1246888999999877            24


Q ss_pred             CcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|+|||+||......    ...+.+..+++|+.++..+++.+    ++.+. +||++||...+.               
T Consensus        81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~---------------  145 (258)
T PRK12429         81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLV---------------  145 (258)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhcc---------------
Confidence            7999999998654321    12335567788999866665554    44556 999999986543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe-----EEecCCc
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPL-----TVQAPGT  239 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  239 (259)
                       +..+...|+.+|.+.+.+.+.++.+   .+++++++||+.+++|....    .+......  .+.+.     ..+....
T Consensus       146 -~~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~  218 (258)
T PRK12429        146 -GSAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRK----QIPDLAKE--RGISEEEVLEDVLLPLV  218 (258)
T ss_pred             -CCCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhh----hhhhhccc--cCCChHHHHHHHHhccC
Confidence             2234567999999999999888665   37999999999999976321    11111000  00000     0111222


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ..+.|++++|+|+++.+++
T Consensus       219 ~~~~~~~~~d~a~~~~~l~  237 (258)
T PRK12429        219 PQKRFTTVEEIADYALFLA  237 (258)
T ss_pred             CccccCCHHHHHHHHHHHc
Confidence            3457999999999988775

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.90  E-value=4.5e-22  Score=192.69  Aligned_cols=220  Identities=21%  Similarity=0.198  Sum_probs=156.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcC----CCeEEEEcCCCCCCc--chhhhcc---------CCCceeEeecccCccc-
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENE----KNEVIVVDNYFTGSK--DNLRKWI---------GHPRFELIRHDVTEPL-   94 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g----~~~V~~~~r~~~~~~--~~~~~~~---------~~~~~~~~~~dl~~~~-   94 (259)
                      ..++|+|||||||+|.+++++|++++    +. |+++.|......  +.+....         ...++.++.+|+.+.. 
T Consensus       970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~-V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~l 1048 (1389)
T TIGR03443       970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFK-VFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKF 1048 (1389)
T ss_pred             CCceEEEeCCccccHHHHHHHHHhcCCCCCcE-EEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccC
Confidence            35899999999999999999999987    55 999988643321  1111100         0136889999998654 


Q ss_pred             ----------cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCC--------
Q 025022           95 ----------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL--------  155 (259)
Q Consensus        95 ----------~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~--------  155 (259)
                                ..++|+|||+|+....   ..........|+.++.+++++|.+.+. +|+|+||..+|+...        
T Consensus      1049 gl~~~~~~~l~~~~d~iiH~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~ 1125 (1389)
T TIGR03443      1049 GLSDEKWSDLTNEVDVIIHNGALVHW---VYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDEL 1125 (1389)
T ss_pred             CcCHHHHHHHHhcCCEEEECCcEecC---ccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhh
Confidence                      3579999999987642   234555566899999999999998887 999999999986421        


Q ss_pred             ----CCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcC
Q 025022          156 ----VHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRG  229 (259)
Q Consensus       156 ----~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~  229 (259)
                          ...+.|+.+....+..+.+.|+.+|+.+|.+++.+.+ .+++++++||+++||++.....  ..++..++.....-
T Consensus      1126 ~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~ 1204 (1389)
T TIGR03443      1126 VQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCIQL 1204 (1389)
T ss_pred             hhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCCchhHHHHHHHHHHHh
Confidence                1123343322222334457899999999999988765 4899999999999998754321  22444555433322


Q ss_pred             CCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          230 EPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       230 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .   .+++....++|++++|++++++.++
T Consensus      1205 ~---~~p~~~~~~~~~~Vddva~ai~~~~ 1230 (1389)
T TIGR03443      1205 G---LIPNINNTVNMVPVDHVARVVVAAA 1230 (1389)
T ss_pred             C---CcCCCCCccccccHHHHHHHHHHHH
Confidence            2   2334455789999999999998764

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2.9e-22  Score=162.05  Aligned_cols=208  Identities=14%  Similarity=0.051  Sum_probs=143.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||+++++.|+++|++ |++..|+.....+..+.+.. ..++.++.+|+++.+            ..
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            66889999999999999999999999998 88888765433222222111 235778899999877            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhC-C-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|++||+||.....    ....+.+..+++|+.++..+++++.    +.+ . +||++||...+.              
T Consensus        83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~--------------  148 (275)
T PRK05876         83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV--------------  148 (275)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc--------------
Confidence            789999999975432    1223456778999999999988874    343 3 899999987654              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.+.+.+.++.+   .++++++++|+.+.++.....    .................+.....++
T Consensus       149 --~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  222 (275)
T PRK05876        149 --PNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANS----ERIRGAACAQSSTTGSPGPLPLQDD  222 (275)
T ss_pred             --CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccch----hhhcCcccccccccccccccccccc
Confidence              3345567999999977777777654   489999999999887642210    0000000001111122233334567


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +++++|+|++++..+
T Consensus       223 ~~~~~dva~~~~~ai  237 (275)
T PRK05876        223 NLGVDDIAQLTADAI  237 (275)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            899999999998765

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.89  E-value=6.9e-22  Score=159.91  Aligned_cols=206  Identities=14%  Similarity=0.066  Sum_probs=141.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||+++++.|+++|+. |+++.|+.....+...... ...++.++.+|+++.+            .
T Consensus         7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   85 (274)
T PRK07775          7 HPDRRPALVAGASSGIGAATAIELAAAGFP-VALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEAL   85 (274)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            355689999999999999999999999998 8888775432221111111 1235778899999877            3


Q ss_pred             CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||......    ...+++..+++|+.++.++++.+.+    .+. +||++||...+.              
T Consensus        86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~--------------  151 (274)
T PRK07775         86 GEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALR--------------  151 (274)
T ss_pred             CCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcC--------------
Confidence            47899999999754311    1234566789999999999888643    334 899999987664              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.|.+++.++++.   +++++++|||.+.++.........+..+.......      + ......
T Consensus       152 --~~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~  222 (274)
T PRK07775        152 --QRPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKW------G-QARHDY  222 (274)
T ss_pred             --CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHh------c-cccccc
Confidence              22234579999999999999988764   89999999988765421111111122222211110      1 112356


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +++++|+|+++++++
T Consensus       223 ~~~~~dva~a~~~~~  237 (274)
T PRK07775        223 FLRASDLARAITFVA  237 (274)
T ss_pred             ccCHHHHHHHHHHHh
Confidence            899999999998875

>PRK09135 pteridine reductase; Provisional

Probab=99.89  E-value=5.2e-22  Score=158.36  Aligned_cols=200  Identities=16%  Similarity=0.107  Sum_probs=139.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---CCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||+|+||++++++|+++|++ |+++.|+.....+.+...+   ....+.++.+|+++.+            
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   82 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYR-VAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA   82 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34589999999999999999999999998 8988876433222222111   1235788999999877            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEecceeecCCCCCCCCCCCcCC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +.++|+|||+||.....    ....+++..+++|+.++.++++++.+.    +..++++++....               
T Consensus        83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------  147 (249)
T PRK09135         83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE---------------  147 (249)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc---------------
Confidence            24689999999964321    122346778999999999999998642    2256666553211               


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       .+..+...|+.+|.+.|.+++.++++.  +++++++||++++||.....   +..........+.++..         +
T Consensus       148 -~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~---~~~~~~~~~~~~~~~~~---------~  214 (249)
T PRK09135        148 -RPLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNS---FDEEARQAILARTPLKR---------I  214 (249)
T ss_pred             -CCCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCcccccc---CCHHHHHHHHhcCCcCC---------C
Confidence             155667789999999999999998775  58999999999999874321   11222222333332211         2


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      .+++|+|+++.+++
T Consensus       215 ~~~~d~a~~~~~~~  228 (249)
T PRK09135        215 GTPEDIAEAVRFLL  228 (249)
T ss_pred             cCHHHHHHHHHHHc
Confidence            25899999996654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.89  E-value=3.8e-22  Score=159.73  Aligned_cols=202  Identities=21%  Similarity=0.164  Sum_probs=140.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      +++++||||+|+||+++++.|+++|++ |+++.|+............ ...++.++.+|+.+.+            +.++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   79 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGAN-VVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL   79 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            468999999999999999999999998 9999886433222111110 1246888999999876            4568


Q ss_pred             CEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        99 d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      |+|||++|......    ...+.+..+..|+.++..+++.+    ++.+. ++|++||...+..                
T Consensus        80 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~----------------  143 (255)
T TIGR01963        80 DILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVA----------------  143 (255)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCC----------------
Confidence            99999998754311    12335667889999988888776    45566 9999999765542                


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeE-------EecCCc
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLT-------VQAPGT  239 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  239 (259)
                      ......|+.+|.+.+.+++.++.+   .+++++++||+.+++|...        ..+..........       ....+.
T Consensus       144 ~~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (255)
T TIGR01963       144 SPFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVE--------KQIADQAKTRGIPEEQVIREVMLPGQ  215 (255)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHH--------HHHHhhhcccCCCchHHHHHHHHccC
Confidence            122357999999999999888765   3899999999999987521        1111111000000       011233


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ..+++++++|+|+++++++
T Consensus       216 ~~~~~~~~~d~a~~~~~~~  234 (255)
T TIGR01963       216 PTKRFVTVDEVAETALFLA  234 (255)
T ss_pred             ccccCcCHHHHHHHHHHHc
Confidence            4568999999999998875

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.89  E-value=3.6e-22  Score=159.54  Aligned_cols=197  Identities=19%  Similarity=0.244  Sum_probs=132.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCcc-c-----c-CCcCEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-L-----L-IEVDQI  101 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~-~-----~-~~~d~v  101 (259)
                      +.++|+|+||||||+||++++++|+++|++ |+++.|+.........   ...+++++.+|+++. .     + .++|+|
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v   89 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAGVRDVDKAKTSLP---QDPSLQIVRADVTEGSDKLVEAIGDDSDAV   89 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEEecCHHHHHHhcc---cCCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence            345789999999999999999999999998 9988886443221111   123688999999874 2     4 589999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      |+++|....    .++...++.|..++.++++++++.++ +||++||..+|+.....+..+..    ....+...|...|
T Consensus        90 i~~~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~----~~~~~~~~~~~~k  161 (251)
T PLN00141         90 ICATGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAY----IFLNLFGLTLVAK  161 (251)
T ss_pred             EECCCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcch----hHHHHHHHHHHHH
Confidence            999885421    11223356788899999999999888 99999999998753322211110    0111122334557


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ...|+++    ++.+++++++||++++++...                +. ..+.........+++.+|+|+++..++
T Consensus       162 ~~~e~~l----~~~gi~~~iirpg~~~~~~~~----------------~~-~~~~~~~~~~~~~i~~~dvA~~~~~~~  218 (251)
T PLN00141        162 LQAEKYI----RKSGINYTIVRPGGLTNDPPT----------------GN-IVMEPEDTLYEGSISRDQVAEVAVEAL  218 (251)
T ss_pred             HHHHHHH----HhcCCcEEEEECCCccCCCCC----------------ce-EEECCCCccccCcccHHHHHHHHHHHh
Confidence            7777655    456899999999999986421                11 111111111235789999999998875

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1.9e-22  Score=163.46  Aligned_cols=162  Identities=14%  Similarity=0.019  Sum_probs=123.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +.+++++||||+|+||++++++|+++|++ |+++.|+..... .+... ...++..+.+|+++.+            +.+
T Consensus         2 ~~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~-~l~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          2 SSMKTWLITGVSSGFGRALAQAALAAGHR-VVGTVRSEAARA-DFEAL-HPDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCCCEEEEecCCChHHHHHHHHHHhCcCE-EEEEeCCHHHHH-HHHhh-cCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            34678999999999999999999999998 999988643222 11111 1236788899999877            346


Q ss_pred             cCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|+|||+||......    ...+....+++|+.++.++++++.    +.+. +||++||...+.                
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~----------------  142 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLI----------------  142 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccC----------------
Confidence            999999999754321    123346678999999999998853    3444 999999986554                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      +..+...|+.+|.+.|.+++.++.+   .+++++++||+.+.++.
T Consensus       143 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~  187 (277)
T PRK06180        143 TMPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDW  187 (277)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCc
Confidence            2234567999999999999988765   48999999999998764

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.89  E-value=1.7e-21  Score=156.06  Aligned_cols=202  Identities=18%  Similarity=0.100  Sum_probs=143.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~   95 (259)
                      ++++++++||||+|+||.+++++|+++|++ |+++.|+............. ..++.++.+|+++.+            .
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAE-VILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            456899999999999999999999999998 88888864432222211111 235788999999876            3


Q ss_pred             CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||......    .....+..+.+|+.++..+++++.+.    +. +||++||.....              
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~--------------  151 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL--------------  151 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc--------------
Confidence            57999999999754321    22345677889999999999888643    44 999999975432              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHH---HhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHR---QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+++.++.   .+++++++++|+.+.++.......  ...+...+....+         ...
T Consensus       152 --~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~--~~~~~~~~~~~~~---------~~~  218 (255)
T PRK07523        152 --ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVA--DPEFSAWLEKRTP---------AGR  218 (255)
T ss_pred             --CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhcc--CHHHHHHHHhcCC---------CCC
Confidence              333456799999999999999876   458999999999999875321100  0112222222222         123


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +..++|+|+++++++
T Consensus       219 ~~~~~dva~~~~~l~  233 (255)
T PRK07523        219 WGKVEELVGACVFLA  233 (255)
T ss_pred             CcCHHHHHHHHHHHc
Confidence            668999999998875

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.89  E-value=6.3e-22  Score=158.76  Aligned_cols=203  Identities=14%  Similarity=0.091  Sum_probs=143.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++|+++||||+|+||++++++|+++|++ |++++|+.....+..++.. ...++.++.+|+++.+            +.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGAD-VVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG   81 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999999998 9999886543222221111 1246788999999876            35


Q ss_pred             CcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||....     .....+++..+++|+.++..+++++.+.    +.+||++||...+.               
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~---------------  146 (258)
T PRK07890         82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH---------------  146 (258)
T ss_pred             CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc---------------
Confidence            79999999986432     1223456788999999999999988652    23899999976543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCc-------cHHHHHHHHHHcCCCeEEecC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDG-------RVVSNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  237 (259)
                       +..+...|+.+|.+.+.+++.++.+   .++++++++|+.+++|.......       .............        
T Consensus       147 -~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  217 (258)
T PRK07890        147 -SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN--------  217 (258)
T ss_pred             -CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc--------
Confidence             3334567999999999999998865   47999999999999985221000       0001111111111        


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                       .....+.+++|+++++++++
T Consensus       218 -~~~~~~~~~~dva~a~~~l~  237 (258)
T PRK07890        218 -SDLKRLPTDDEVASAVLFLA  237 (258)
T ss_pred             -CCccccCCHHHHHHHHHHHc
Confidence             11224678999999998765

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.89  E-value=2.3e-21  Score=154.62  Aligned_cols=198  Identities=17%  Similarity=0.129  Sum_probs=141.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh---ccC--CCceeEeecccCccc---------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK---WIG--HPRFELIRHDVTEPL---------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~dl~~~~---------   94 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |+++.|......+..+.   ...  ...+.++.+|+.+.+         
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   81 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAG   81 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence            356789999999999999999999999998 88877643333222221   111  246788999999887         


Q ss_pred             ---cCCcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHH-----HhCC-eEEEEecceeecCCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~-~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                         ..++|.|||++|....    .....++...+++|+.++..+++++.     +.+. ++|++||...+.         
T Consensus        82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~---------  152 (249)
T PRK12827         82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVR---------  152 (249)
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcC---------
Confidence               2579999999997652    12223456788999999999999987     3454 899999986654         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                             +..+...|+.+|.+.+.+++.++.+   .+++++++||+++.++.....   ...   .......+.      
T Consensus       153 -------~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~---~~~---~~~~~~~~~------  213 (249)
T PRK12827        153 -------GNRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNA---APT---EHLLNPVPV------  213 (249)
T ss_pred             -------CCCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCccccc---chH---HHHHhhCCC------
Confidence                   2233457999999999999988765   389999999999999864321   111   122222211      


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                         ..+.+.+|+++++++++
T Consensus       214 ---~~~~~~~~va~~~~~l~  230 (249)
T PRK12827        214 ---QRLGEPDEVAALVAFLV  230 (249)
T ss_pred             ---cCCcCHHHHHHHHHHHc
Confidence               12457899999887764

>PRK06194 hypothetical protein; Provisional

Probab=99.89  E-value=1.8e-22  Score=164.45  Aligned_cols=163  Identities=10%  Similarity=0.006  Sum_probs=118.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~   95 (259)
                      .++++++|||||+|+||++++++|+++|+. |++++|+.....+...+... ..++.++.+|+++.+            .
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMK-LVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            356789999999999999999999999998 88888864432222222111 236778999999876            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhC-------CeEEEEecceeecCCCCCCCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVG-------ARILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~-------~~~i~~Ss~~~~~~~~~~~~~  160 (259)
                      .++|+|||+||.....    ....+++..+++|+.++.++++++    .+.+       .++|++||...+.        
T Consensus        82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------  153 (287)
T PRK06194         82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL--------  153 (287)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc--------
Confidence            4689999999976542    122445667899999999977764    3322       2899999987664        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhC-----CcEEEEEeccccC
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG-----IEIRIARIFNTYG  208 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-----~~~~~lr~~~v~g  208 (259)
                              +..+...|+.+|.+.+.+++.++.+.+     +++..+.|+.+..
T Consensus       154 --------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t  198 (287)
T PRK06194        154 --------APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPT  198 (287)
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccC
Confidence                    223346799999999999999887653     5666667665544

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.88  E-value=5.7e-22  Score=158.47  Aligned_cols=204  Identities=18%  Similarity=0.111  Sum_probs=140.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||++++++|+++|++ |+++.|+.....+.........++.++.+|+++.+            ..+
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~   81 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGAR-VVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGR   81 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCe-EEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45789999999999999999999999998 99998865433222222212346789999999876            357


Q ss_pred             cCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|+|||++|......    ...+.+..+.+|+.++..+.+.+    ++.+. +||++||.....                
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~----------------  145 (252)
T PRK06138         82 LDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALA----------------  145 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhcc----------------
Confidence            999999999754311    22335667889999987777655    44555 999999985433                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcc-HHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGR-VVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      +......|+.+|.+.+.+++.++.+.   +++++++||+.++++........ ..+..........        .....+
T Consensus       146 ~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  217 (252)
T PRK06138        146 GGRGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRAR--------HPMNRF  217 (252)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhc--------CCCCCC
Confidence            11233569999999999999998765   89999999999998753211000 0011111111111        111236


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ++++|+++++++++
T Consensus       218 ~~~~d~a~~~~~l~  231 (252)
T PRK06138        218 GTAEEVAQAALFLA  231 (252)
T ss_pred             cCHHHHHHHHHHHc
Confidence            78999999998765

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=2.2e-21  Score=154.89  Aligned_cols=203  Identities=15%  Similarity=0.085  Sum_probs=142.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||.+++++|+++|++ |+++.|+...............++.++.+|+.+.+            ..+
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGS   81 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            46789999999999999999999999998 99999975443322222211245789999999888            347


Q ss_pred             cCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           98 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        98 ~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      +|+|||++|.....     ....+++..+++|+.++..+++.+.+    .+. +||++||...+.               
T Consensus        82 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------  146 (251)
T PRK07231         82 VDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR---------------  146 (251)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC---------------
Confidence            89999999864321     12244667889999998888776653    444 899999987665               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+++.++.+.   +++++.++|+.+.++.....................         ....+
T Consensus       147 -~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~---------~~~~~  216 (251)
T PRK07231        147 -PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATI---------PLGRL  216 (251)
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCC---------CCCCC
Confidence             33445679999999999999887653   799999999999776422110000011111111111         12346


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ++++|+|+++++++
T Consensus       217 ~~~~dva~~~~~l~  230 (251)
T PRK07231        217 GTPEDIANAALFLA  230 (251)
T ss_pred             cCHHHHHHHHHHHh
Confidence            79999999998875

>PRK12320 hypothetical protein; Provisional

Probab=99.88  E-value=2.7e-21  Score=170.74  Aligned_cols=170  Identities=24%  Similarity=0.337  Sum_probs=125.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----cCCcCEEEEccCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----LIEVDQIYHLACPA  108 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----~~~~d~vi~~a~~~  108 (259)
                      |+|+||||+||||++|++.|+++|++ |++++|.....        ...+++++.+|+.+..    +.++|+|||+|+..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~~-Vi~ldr~~~~~--------~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~   71 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGHT-VSGIAQHPHDA--------LDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD   71 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCE-EEEEeCChhhc--------ccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence            58999999999999999999999998 99998753221        1246889999998875    46899999999753


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHH
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF  188 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~  188 (259)
                      ..     .   ...+|+.++.+++++|++.++++||+||.  ++.               +    ..|.    ..|.++ 
T Consensus        72 ~~-----~---~~~vNv~Gt~nLleAA~~~GvRiV~~SS~--~G~---------------~----~~~~----~aE~ll-  117 (699)
T PRK12320         72 TS-----A---PGGVGITGLAHVANAAARAGARLLFVSQA--AGR---------------P----ELYR----QAETLV-  117 (699)
T ss_pred             cc-----c---hhhHHHHHHHHHHHHHHHcCCeEEEEECC--CCC---------------C----cccc----HHHHHH-
Confidence            21     1   12579999999999999998899999986  232               1    0122    356554 


Q ss_pred             HHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          189 DYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       189 ~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                         ...+++++++|++++|||+......+++..++.....++++.          ++|++|++++++.++
T Consensus       118 ---~~~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI~----------vIyVdDvv~alv~al  174 (699)
T PRK12320        118 ---STGWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARPIR----------VLHLDDLVRFLVLAL  174 (699)
T ss_pred             ---HhcCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCceE----------EEEHHHHHHHHHHHH
Confidence               335689999999999999754332345566555444444433          489999999998764

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.88  E-value=3e-22  Score=160.60  Aligned_cols=208  Identities=17%  Similarity=0.152  Sum_probs=143.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +.+++++||||+|+||.++++.|+++|++ |+++.|+........+. . ...+.++.+|+++.+            +.+
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKPARARLAALE-I-GPAAIAVSLDVTRQDSIDRIVAAAVERFGG   80 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHH-h-CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            45689999999999999999999999998 99988865432222222 1 235788999999877            357


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh------CCeEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV------GARILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      +|++||+||.....    ....+++..+++|+.++..+++++.+.      +.+||++||.....               
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~---------------  145 (257)
T PRK07067         81 IDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR---------------  145 (257)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC---------------
Confidence            99999999865321    123456778999999999999988543      13899999964221               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+++.++.+   +++++++++|+.++++...... ..+.... ....+.....++.+.....+
T Consensus       146 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~  222 (257)
T PRK07067        146 -GEALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVD-ALFARYE-NRPPGEKKRLVGEAVPLGRM  222 (257)
T ss_pred             -CCCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhh-hhhhhcc-CCCHHHHHHHHhhcCCCCCc
Confidence             2234567999999999999988774   5899999999999997532100 0000000 00000001112233345678


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ++++|+|+++++++
T Consensus       223 ~~~~dva~~~~~l~  236 (257)
T PRK07067        223 GVPDDLTGMALFLA  236 (257)
T ss_pred             cCHHHHHHHHHHHh
Confidence            89999999998875

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.88  E-value=3e-21  Score=153.98  Aligned_cols=200  Identities=18%  Similarity=0.134  Sum_probs=140.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||++++++|+++|++ |+++.|+.....+..++.  ..++.++.+|+++.+            ..+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGAR-VAITGRDPASLEAARAEL--GESALVIRADAGDVAAQKALAQALAEAFGR   80 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            56789999999999999999999999998 999888643222222211  235778899998865            357


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecce-eecCCCCCCCCCCCcCCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE-VYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~-~~~~~~~~~~~e~~~~~~~~  169 (259)
                      +|++||+||.....    ....+++..+++|+.++.++++++.+.   +.++|++||.. .++.                
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~----------------  144 (249)
T PRK06500         81 LDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM----------------  144 (249)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC----------------
Confidence            89999999865431    123456788999999999999999752   23777777753 3331                


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       .....|+.+|.+.|.+++.++.+.   ++++++++|+.+++|.....  .......+.+.+....++..         +
T Consensus       145 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~  214 (249)
T PRK06500        145 -PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLGR---------F  214 (249)
T ss_pred             -CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCCC---------C
Confidence             233679999999999999887654   89999999999998742110  11122233333333333221         3


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ..++|+++++.+++
T Consensus       215 ~~~~~va~~~~~l~  228 (249)
T PRK06500        215 GTPEEIAKAVLYLA  228 (249)
T ss_pred             cCHHHHHHHHHHHc
Confidence            47899999998875

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.88  E-value=5.7e-21  Score=152.28  Aligned_cols=199  Identities=14%  Similarity=0.059  Sum_probs=139.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-C-CCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-G-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++++||||+|+||+++++.|+++|+. |++..++.....+.....+ . ..++.++.+|+.+.+            +
T Consensus         4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (247)
T PRK12935          4 LNGKVAIVTGGAKGIGKAITVALAQEGAK-VVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHF   82 (247)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            56789999999999999999999999998 7765543222221221111 1 236888999999877            3


Q ss_pred             CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|+|||+||......    .....++.+++|+.++..+++++.+    .+. ++|++||...+.              
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------------  148 (247)
T PRK12935         83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQA--------------  148 (247)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcC--------------
Confidence            56899999999754321    2245677899999999999988864    334 999999975433              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.+.+++.++.+.   ++++++++|+.+.++....    .............         ..+.
T Consensus       149 --~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~----~~~~~~~~~~~~~---------~~~~  213 (247)
T PRK12935        149 --GGFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAE----VPEEVRQKIVAKI---------PKKR  213 (247)
T ss_pred             --CCCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhh----ccHHHHHHHHHhC---------CCCC
Confidence              11234679999999999998887654   8999999999998754221    1111111221111         1345


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +.+++|+++++++++
T Consensus       214 ~~~~edva~~~~~~~  228 (247)
T PRK12935        214 FGQADEIAKGVVYLC  228 (247)
T ss_pred             CcCHHHHHHHHHHHc
Confidence            789999999998865

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.88  E-value=4.2e-21  Score=155.89  Aligned_cols=205  Identities=15%  Similarity=0.076  Sum_probs=140.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc-----------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL-----------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~-----------~   95 (259)
                      |++++++||||+|+||+++++.|+++|+. |++++|+.+.........   ....++.++.+|+++.+           .
T Consensus         1 ~~~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~   79 (280)
T PRK06914          1 MNKKIAIVTGASSGFGLLTTLELAKKGYL-VIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEI   79 (280)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhc
Confidence            45688999999999999999999999998 888888654322221111   11246888999999876           3


Q ss_pred             CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|+|||+||......    ...+.+..+++|+.++..+++.+    ++.+. +||++||...+.              
T Consensus        80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~--------------  145 (280)
T PRK06914         80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRV--------------  145 (280)
T ss_pred             CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccC--------------
Confidence            56899999998755321    12345667889999988888775    55555 999999975432              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHH---HhCCcEEEEEeccccCCCCCCCC---------ccHHHHHHHHHHcCCCeEE
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHR---QHGIEIRIARIFNTYGPRMNIDD---------GRVVSNFIAQAIRGEPLTV  234 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~~~~~~~lr~~~v~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~  234 (259)
                        ...+...|+.+|.+.+.+++.++.   .++++++++|||.+.++......         ..........+....    
T Consensus       146 --~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  219 (280)
T PRK06914        146 --GFPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHI----  219 (280)
T ss_pred             --CCCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHH----
Confidence              223446799999999999998873   45899999999999887422110         001111111111000    


Q ss_pred             ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          235 QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       235 ~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                       .  .....+++++|+|+++++++
T Consensus       220 -~--~~~~~~~~~~dva~~~~~~~  240 (280)
T PRK06914        220 -N--SGSDTFGNPIDVANLIVEIA  240 (280)
T ss_pred             -h--hhhhccCCHHHHHHHHHHHH
Confidence             0  11235678999999998875

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.88  E-value=7.2e-21  Score=151.38  Aligned_cols=200  Identities=16%  Similarity=0.110  Sum_probs=141.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      +|++++++||||+|+||.++++.|+++|+. |+++.|+............ ...++.++.+|+.+.+            +
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAF   80 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            356689999999999999999999999999 9999987543322221111 1246788899999876            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|+|||++|.....    ....+.+..++.|+.++.++++.+.    +.+. +||++||.....              
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~--------------  146 (246)
T PRK05653         81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVT--------------  146 (246)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc--------------
Confidence            5679999999865431    1123356678899999999988874    4555 999999975332              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|..+|.+.+.+++.++++   .+++++++||+.++++....    .............+         ...
T Consensus       147 --~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~----~~~~~~~~~~~~~~---------~~~  211 (246)
T PRK05653        147 --GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG----LPEEVKAEILKEIP---------LGR  211 (246)
T ss_pred             --CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh----hhHHHHHHHHhcCC---------CCC
Confidence              2233456999999999999988764   47999999999999986321    11111122221111         245


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +++++|+++++.+++
T Consensus       212 ~~~~~dva~~~~~~~  226 (246)
T PRK05653        212 LGQPEEVANAVAFLA  226 (246)
T ss_pred             CcCHHHHHHHHHHHc
Confidence            788999999998775

>PRK05717 oxidoreductase; Validated

Probab=99.88  E-value=7.4e-21  Score=152.34  Aligned_cols=165  Identities=15%  Similarity=0.055  Sum_probs=125.5

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------   94 (259)
                      .+.+++++++||||+|+||+++++.|+++|++ |++++|+.....+..+. . ..++.++.+|+++.+            
T Consensus         5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~-v~~~~~~~~~~~~~~~~-~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (255)
T PRK05717          5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQ-VVLADLDRERGSKVAKA-L-GENAWFIAMDVADEAQVAAGVAEVLGQ   81 (255)
T ss_pred             CcccCCCEEEEeCCcchHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHH-c-CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999998 88887754322222221 1 236788999999876            


Q ss_pred             cCCcCEEEEccCCCCcc------ccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCc
Q 025022           95 LIEVDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      .+++|++||+||.....      ....+++..+++|+.++.++++++.+    .+.++|++||...+.            
T Consensus        82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~------------  149 (255)
T PRK05717         82 FGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQ------------  149 (255)
T ss_pred             hCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcC------------
Confidence            35689999999975321      12234568899999999999999864    223899999876543            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR  210 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~  210 (259)
                          +......|+.+|.+.+.+++.++.+.  ++++.+++|+++.++.
T Consensus       150 ----~~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~  193 (255)
T PRK05717        150 ----SEPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARD  193 (255)
T ss_pred             ----CCCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCc
Confidence                12233569999999999999998875  4899999999998865

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.88  E-value=5.2e-21  Score=152.74  Aligned_cols=198  Identities=19%  Similarity=0.174  Sum_probs=141.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||.+++++|+++|++ |+++.|.........+... ...++.++.+|+++.+            .
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGAS-VVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF   81 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            356789999999999999999999999998 9999886433222111111 1235778899999886            3


Q ss_pred             CCcCEEEEccCCCCc-------cccccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCCCCCCCCCCC
Q 025022           96 IEVDQIYHLACPASP-------IFYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                      .++|+|||+||....       .......+..+++|+.++.++++++.+.    +. +||++||...+.           
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-----------  150 (250)
T PRK07774         82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL-----------  150 (250)
T ss_pred             CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC-----------
Confidence            479999999996431       1122345677889999999998888653    33 999999987653           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                              +.+.|+.+|.+.|.+++.++++.   ++++++++||.+..+.....   ....+...+..+.+...      
T Consensus       151 --------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~---~~~~~~~~~~~~~~~~~------  213 (250)
T PRK07774        151 --------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTV---TPKEFVADMVKGIPLSR------  213 (250)
T ss_pred             --------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCcccccc---CCHHHHHHHHhcCCCCC------
Confidence                    23569999999999999998764   79999999998887653221   11223333333333221      


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                         +.+++|+++++++++
T Consensus       214 ---~~~~~d~a~~~~~~~  228 (250)
T PRK07774        214 ---MGTPEDLVGMCLFLL  228 (250)
T ss_pred             ---CcCHHHHHHHHHHHh
Confidence               346899999988764

>PRK06128 oxidoreductase; Provisional

Probab=99.87  E-value=2e-20  Score=153.28  Aligned_cols=201  Identities=16%  Similarity=0.101  Sum_probs=143.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC-CcchhhhccC--CCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIG--HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~--~~~~~~~~~dl~~~~------------   94 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++..++... ..+.....+.  ..++.++.+|+++.+            
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  131 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFAREGAD-IALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE  131 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence            55789999999999999999999999998 7776654322 1111211111  235778899999876            


Q ss_pred             cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcCC
Q 025022           95 LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +.++|++||+||....     +...++++..+++|+.++..+++++.+.   +.+||++||...|.              
T Consensus       132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~--------------  197 (300)
T PRK06128        132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQ--------------  197 (300)
T ss_pred             hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccC--------------
Confidence            4579999999996432     1233457889999999999999998753   23999999988775              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+++.++.+   .|+++++++||.+.+|......  ........+....+         ...
T Consensus       198 --~~~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~--~~~~~~~~~~~~~p---------~~r  264 (300)
T PRK06128        198 --PSPTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGG--QPPEKIPDFGSETP---------MKR  264 (300)
T ss_pred             --CCCCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCC--CCHHHHHHHhcCCC---------CCC
Confidence              2233456999999999999999876   4899999999999998632110  11122222222222         223


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|++.++++++
T Consensus       265 ~~~p~dva~~~~~l~  279 (300)
T PRK06128        265 PGQPVEMAPLYVLLA  279 (300)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            568899999988775

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=99.87  E-value=3.2e-21  Score=148.71  Aligned_cols=200  Identities=18%  Similarity=0.172  Sum_probs=160.4

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEE
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      ..+.++-.+-|+|||||+|++++++|.+.|-. |++-.|.++.....++-.-+..++.++..|+.|++     .+...+|
T Consensus        56 RsS~sGiVaTVFGAtGFlGryvvnklak~GSQ-viiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVV  134 (391)
T KOG2865|consen   56 RSSVSGIVATVFGATGFLGRYVVNKLAKMGSQ-VIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVV  134 (391)
T ss_pred             cccccceEEEEecccccccHHHHHHHhhcCCe-EEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhCcEE
Confidence            33456778999999999999999999999999 98888877766655655555678999999999998     5678999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      ||+.|.-    ++.....+.++|+.+...+++.|++.|+ ||||+|+...                  .....+.|-.+|
T Consensus       135 INLIGrd----~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lga------------------nv~s~Sr~LrsK  192 (391)
T KOG2865|consen  135 INLIGRD----YETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGA------------------NVKSPSRMLRSK  192 (391)
T ss_pred             EEeeccc----cccCCcccccccchHHHHHHHHHHhhChhheeehhhccc------------------cccChHHHHHhh
Confidence            9999853    3334445668999999999999999999 9999998651                  123336699999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc-eeeeeeeHHHHHHHHHhhh
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT-QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+.|..+++..    ...+|+||..+||..     .+++..+.....+-..+++++.|. ....+||+-|||++|+.++
T Consensus       193 ~~gE~aVrdaf----PeAtIirPa~iyG~e-----Drfln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAv  262 (391)
T KOG2865|consen  193 AAGEEAVRDAF----PEATIIRPADIYGTE-----DRFLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAV  262 (391)
T ss_pred             hhhHHHHHhhC----Ccceeechhhhcccc-----hhHHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhc
Confidence            99999996653    568999999999975     347777776666677788888764 4558999999999998764

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.87  E-value=1.1e-20  Score=144.03  Aligned_cols=199  Identities=16%  Similarity=0.046  Sum_probs=143.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      .++|.++|||||+.||.++++.|.+.|++ |++..|+.+...+...+. ....+..+..|++|.+            +.+
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~-vvl~aRR~drL~~la~~~-~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~   81 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGAK-VVLAARREERLEALADEI-GAGAALALALDVTDRAAVEAAIEALPEEFGR   81 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCCe-EEEEeccHHHHHHHHHhh-ccCceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence            45689999999999999999999999999 999998655444333332 2246888999999986            678


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||....+    ...++++.++++|+.+..+..++..    +.+. +||.+||+....                
T Consensus        82 iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~----------------  145 (246)
T COG4221          82 IDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY----------------  145 (246)
T ss_pred             ccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc----------------
Confidence            99999999977642    2235688999999999999888763    4444 999999986322                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +....+.|+.+|++...+.+.++.+.   +++++.+-||.+-......-...--..-.....            ....++
T Consensus       146 ~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y------------~~~~~l  213 (246)
T COG4221         146 PYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVY------------KGGTAL  213 (246)
T ss_pred             cCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHh------------ccCCCC
Confidence            44445779999999999999888764   799999999888553211100000000011111            122467


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      ..+|+|+++.+++
T Consensus       214 ~p~dIA~~V~~~~  226 (246)
T COG4221         214 TPEDIAEAVLFAA  226 (246)
T ss_pred             CHHHHHHHHHHHH
Confidence            8899999998875

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.87  E-value=4.9e-21  Score=164.53  Aligned_cols=199  Identities=14%  Similarity=0.087  Sum_probs=136.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc----------CCCceeEeecccCccc-----
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----------GHPRFELIRHDVTEPL-----   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~dl~~~~-----   94 (259)
                      +++++|+||||+|+||++++++|+++|+. |+++.|+............          ...++.++.+|+.+.+     
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            35689999999999999999999999998 9998886543322111100          0135789999999877     


Q ss_pred             cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR  173 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~  173 (259)
                      ++++|+|||++|....  ...+....+++|+.++.+++++|++.++ +||++||.+.+...    ..+.      .....
T Consensus       157 LggiDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g----~p~~------~~~sk  224 (576)
T PLN03209        157 LGNASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVG----FPAA------ILNLF  224 (576)
T ss_pred             hcCCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccC----cccc------chhhH
Confidence            6789999999986532  1123556788999999999999999988 99999998653110    0010      11233


Q ss_pred             CchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHH
Q 025022          174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCK  253 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  253 (259)
                      ..|...|..+|..+    ...|+++++||||+++++.......            +. +............+..+|||++
T Consensus       225 ~~~~~~KraaE~~L----~~sGIrvTIVRPG~L~tp~d~~~~t------------~~-v~~~~~d~~~gr~isreDVA~v  287 (576)
T PLN03209        225 WGVLCWKRKAEEAL----IASGLPYTIVRPGGMERPTDAYKET------------HN-LTLSEEDTLFGGQVSNLQVAEL  287 (576)
T ss_pred             HHHHHHHHHHHHHH----HHcCCCEEEEECCeecCCccccccc------------cc-eeeccccccCCCccCHHHHHHH
Confidence            45777788888776    3568999999999998874321000            00 1111111111235788999999


Q ss_pred             HHhhh
Q 025022          254 SCFLA  258 (259)
Q Consensus       254 ~~~~l  258 (259)
                      +++++
T Consensus       288 VvfLa  292 (576)
T PLN03209        288 MACMA  292 (576)
T ss_pred             HHHHH
Confidence            99875

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.87  E-value=6.6e-21  Score=154.30  Aligned_cols=163  Identities=15%  Similarity=0.113  Sum_probs=124.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      |++++|+||||+|+||++++++|+++|+. |++++|+.....+ +.... ...+.++++|+++.+            ..+
T Consensus         1 ~~~k~vlItGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (275)
T PRK08263          1 MMEKVWFITGASRGFGRAWTEAALERGDR-VVATARDTATLAD-LAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGR   77 (275)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHH-HHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35689999999999999999999999998 9998886433221 11111 235778899999876            357


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ...++++..+++|+.++..+++.+    ++.+. ++|++||...+.                
T Consensus        78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~----------------  141 (275)
T PRK08263         78 LDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGIS----------------  141 (275)
T ss_pred             CCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcC----------------
Confidence            89999999976432    123456788999999998888775    45555 999999987664                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM  211 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~  211 (259)
                      +......|+.+|.+.+.+.+.++.+   .+++++++||+.+..+..
T Consensus       142 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~  187 (275)
T PRK08263        142 AFPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWA  187 (275)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCcc
Confidence            2233457999999999999888765   689999999998877643

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=8.8e-21  Score=151.95  Aligned_cols=198  Identities=15%  Similarity=0.050  Sum_probs=139.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +|+++||||+|+||+++++.|+++|++ |++++|+...........+  ...++.++.+|+++.+            ..+
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFD-LAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR   80 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999998 8888876433221111111  1246889999999976            357


Q ss_pred             cCEEEEccCCCCcc------ccccChhHHHHHhhhhHHHHHHHHHHh-----C-----C-eEEEEecceeecCCCCCCCC
Q 025022           98 VDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKRV-----G-----A-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        98 ~d~vi~~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~-----~-----~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                      +|++||+||.....      ....+++..+++|+.++.++++++.+.     +     . +||++||...+.        
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--------  152 (256)
T PRK12745         81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM--------  152 (256)
T ss_pred             CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc--------
Confidence            99999999865321      123456778999999999998887542     1     3 799999976543        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (259)
                              +..+...|+.+|.+.|.+++.++.+   +++++++++|+.+.++....    ....+......+. .     
T Consensus       153 --------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~----~~~~~~~~~~~~~-~-----  214 (256)
T PRK12745        153 --------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAP----VTAKYDALIAKGL-V-----  214 (256)
T ss_pred             --------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccc----cchhHHhhhhhcC-C-----
Confidence                    2233467999999999999998865   58999999999998865321    1122222111111 1     


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                        ....+.+++|+++++.+++
T Consensus       215 --~~~~~~~~~d~a~~i~~l~  233 (256)
T PRK12745        215 --PMPRWGEPEDVARAVAALA  233 (256)
T ss_pred             --CcCCCcCHHHHHHHHHHHh
Confidence              1234679999999988764

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.87  E-value=2.5e-21  Score=155.46  Aligned_cols=206  Identities=19%  Similarity=0.134  Sum_probs=140.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc------------cC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++||||+|+||.++++.|+++|++ |++++|+...........   ....++.++.+|+++.+            +.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYR-VAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999998 888888654332222111   11246889999999876            36


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEeccee-ecCCCCCCCCCCCcC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEV-YGDPLVHPQDESYWG  165 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~-~~~~~~~~~~e~~~~  165 (259)
                      ++|++||+||.....    ....+++..+++|+.++..+++++.+    .+ . ++|++||... ++             
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~-------------  147 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVG-------------  147 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccC-------------
Confidence            799999999865432    12234567889999998877776643    44 3 9999998642 22             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHH---HhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHH--cCCCeEEecCCce
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHR---QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI--RGEPLTVQAPGTQ  240 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  240 (259)
                          ......|+.+|.+.+.+++.++.   .+++++++++||.++++...   ...++.+.....  .+.....+.++..
T Consensus       148 ----~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (259)
T PRK12384        148 ----SKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMF---QSLLPQYAKKLGIKPDEVEQYYIDKVP  220 (259)
T ss_pred             ----CCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhh---hhhhHHHHHhcCCChHHHHHHHHHhCc
Confidence                12235799999999999988875   36899999999998876421   112332221110  0000111122334


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+++++|+++++++++
T Consensus       221 ~~~~~~~~dv~~~~~~l~  238 (259)
T PRK12384        221 LKRGCDYQDVLNMLLFYA  238 (259)
T ss_pred             ccCCCCHHHHHHHHHHHc
Confidence            567889999999998775

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.87  E-value=8.7e-21  Score=153.68  Aligned_cols=201  Identities=18%  Similarity=0.092  Sum_probs=140.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---CCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~------------   94 (259)
                      |++++++||||+|+||.++++.|+++|++ |+++.|+........+...   ...++.++.+|+.+++            
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAA-VMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW   83 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            66799999999999999999999999998 9999886443222222111   1246788899998877            


Q ss_pred             cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      ..++|++||+||....     .....+....+++|+.++..+++++.+    .+. +|+++||...+.            
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~------------  151 (276)
T PRK05875         84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN------------  151 (276)
T ss_pred             cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC------------
Confidence            2479999999985421     112233567888999999999887654    233 899999987653            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          +..+...|+.+|.+.|.+++.++++.   +++++++||+.+.++.......  ............+         .
T Consensus       152 ----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~---------~  216 (276)
T PRK05875        152 ----THRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITE--SPELSADYRACTP---------L  216 (276)
T ss_pred             ----CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCcccccccc--CHHHHHHHHcCCC---------C
Confidence                22345779999999999999988764   6999999999988765321100  0111111222211         1


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+++++|+++++.+++
T Consensus       217 ~~~~~~~dva~~~~~l~  233 (276)
T PRK05875        217 PRVGEVEDVANLAMFLL  233 (276)
T ss_pred             CCCcCHHHHHHHHHHHc
Confidence            23567899999988775

>PRK06182 short chain dehydrogenase; Validated

Probab=99.87  E-value=7.4e-21  Score=153.84  Aligned_cols=159  Identities=15%  Similarity=0.060  Sum_probs=119.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      |++++++||||+|+||++++++|+++|++ |+++.|+.+.    ++... ..++.++.+|+++.+            ..+
T Consensus         1 ~~~k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~----l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~   74 (273)
T PRK06182          1 MQKKVALVTGASSGIGKATARRLAAQGYT-VYGAARRVDK----MEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGR   74 (273)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHH----HHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            45789999999999999999999999998 9998885432    22211 135788999999987            247


Q ss_pred             cCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHH----HHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNML----GLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~----~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||......    ...+++..+++|+.++..++    ..+++.+. ++|++||...+.                
T Consensus        75 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------------  138 (273)
T PRK06182         75 IDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKI----------------  138 (273)
T ss_pred             CCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcC----------------
Confidence            999999999764321    23456778899998865554    45566665 999999965322                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      +......|+.+|.+.+.+.+.++.+   .++++++++|+++.++.
T Consensus       139 ~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~  183 (273)
T PRK06182        139 YTPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEW  183 (273)
T ss_pred             CCCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCccccc
Confidence            1122346999999999998877643   58999999999998875

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.87  E-value=5.6e-21  Score=153.77  Aligned_cols=205  Identities=22%  Similarity=0.186  Sum_probs=138.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||++++++|+++|+. |+++.|+.....+ +.......++.++.+|+++++            +.+
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVSEAALAA-TAARLPGAKVTATVADVADPAQVERVFDTAVERFGG   86 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHH-HHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            56789999999999999999999999998 9999986443222 222222225688999999877            257


Q ss_pred             cCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHH----HhCC--eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           98 VDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        98 ~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +|+|||++|....     .....+....++.|+.++..+++++.    ..+.  +++++||.....              
T Consensus        87 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~--------------  152 (264)
T PRK12829         87 LDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRL--------------  152 (264)
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccccccc--------------
Confidence            9999999997622     11223467889999999999888773    3333  678777754322              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe----cCCc
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQ----APGT  239 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  239 (259)
                        .......|+.+|.+.|.+++.++++.   +++++++||+++++|....    .........  +......    ....
T Consensus       153 --~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~  224 (264)
T PRK12829        153 --GYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRR----VIEARAQQL--GIGLDEMEQEYLEKI  224 (264)
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHH----Hhhhhhhcc--CCChhHHHHHHHhcC
Confidence              12233569999999999999887653   7999999999999986321    111100000  0000000    0001


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....+++++|+++++.+++
T Consensus       225 ~~~~~~~~~d~a~~~~~l~  243 (264)
T PRK12829        225 SLGRMVEPEDIAATALFLA  243 (264)
T ss_pred             CCCCCCCHHHHHHHHHHHc
Confidence            1235899999999987764

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.87  E-value=1.3e-20  Score=151.31  Aligned_cols=203  Identities=16%  Similarity=0.082  Sum_probs=142.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||.++++.|+++|+. |+++.|+........+... ...++.++.+|+++.+            ..
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~   88 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGAR-VVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFG   88 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            56799999999999999999999999998 8988886433221111111 1236778999999876            25


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh-----CC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV-----GA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|++||+||.....    .....++..+++|+.++..+++++.+.     +. +||++||...+.....          
T Consensus        89 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~----------  158 (259)
T PRK08213         89 HVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP----------  158 (259)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc----------
Confidence            789999999864321    122345678889999999999987654     44 9999999765542110          


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        ...+...|..+|.+.+.+++.++++.   ++++.+++|+.+-.+...    ..++.+.+......++..         
T Consensus       159 --~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~----~~~~~~~~~~~~~~~~~~---------  223 (259)
T PRK08213        159 --EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTR----GTLERLGEDLLAHTPLGR---------  223 (259)
T ss_pred             --cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchh----hhhHHHHHHHHhcCCCCC---------
Confidence              11244679999999999999988764   799999999888665421    233444444443333322         


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+++++.+++
T Consensus       224 ~~~~~~va~~~~~l~  238 (259)
T PRK08213        224 LGDDEDLKGAALLLA  238 (259)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            335789988887764

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.87  E-value=1.9e-20  Score=149.49  Aligned_cols=201  Identities=16%  Similarity=0.078  Sum_probs=137.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEE-EcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~-~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      |.+++++||||+|+||+++++.|+++|++ |++ ..|+.....+..+... ...++.++.+|+++++            .
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYD-IAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF   80 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45689999999999999999999999998 655 4554332222111111 1246788999999987            3


Q ss_pred             CCcCEEEEccCCCCcccc----ccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|+|||+||.......    .......+++|+.++..+++++.+    .+. +||++||...+.              
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------------  146 (250)
T PRK08063         81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR--------------  146 (250)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc--------------
Confidence            479999999986543211    223445678999999999887754    344 999999975443              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.|.+++.++.+   .++++++++|+.+..+........  ..+........+         ...
T Consensus       147 --~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~--~~~~~~~~~~~~---------~~~  213 (250)
T PRK08063        147 --YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNR--EELLEDARAKTP---------AGR  213 (250)
T ss_pred             --CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCc--hHHHHHHhcCCC---------CCC
Confidence              3334567999999999999998765   579999999999987653211110  111111111111         123


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +++.+|+|+++++++
T Consensus       214 ~~~~~dva~~~~~~~  228 (250)
T PRK08063        214 MVEPEDVANAVLFLC  228 (250)
T ss_pred             CcCHHHHHHHHHHHc
Confidence            688999999998765

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.87  E-value=7.6e-21  Score=151.98  Aligned_cols=195  Identities=18%  Similarity=0.107  Sum_probs=141.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||++++++|+++|++ |+++.|+.      ...  ...++..+.+|+++.+            ..+
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~~-v~~~~~~~------~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGAK-VIGFDQAF------LTQ--EDYPFATFVLDVSDAAAVAQVCQRLLAETGP   76 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecch------hhh--cCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            56789999999999999999999999998 88888854      111  1246788999999877            356


Q ss_pred             cCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||++|......    ...++...+++|+.++..+++++..    .+. +||++||.....                
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~----------------  140 (252)
T PRK08220         77 LDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHV----------------  140 (252)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhcc----------------
Confidence            899999999754321    2345677899999999999888743    333 899999975432                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCc------cHHHHHHHHHHcCCCeEEecCCc
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDG------RVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                      +..+...|+.+|.+.+.+++.++++   .++++++++|+.++++.......      ..+.........+         .
T Consensus       141 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~  211 (252)
T PRK08220        141 PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLG---------I  211 (252)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhc---------C
Confidence            3344567999999999999998876   68999999999999985321000      0000001111111         1


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....+++++|+|+++++++
T Consensus       212 ~~~~~~~~~dva~~~~~l~  230 (252)
T PRK08220        212 PLGKIARPQEIANAVLFLA  230 (252)
T ss_pred             CCcccCCHHHHHHHHHHHh
Confidence            2345789999999998875

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=5.2e-21  Score=152.88  Aligned_cols=203  Identities=12%  Similarity=-0.071  Sum_probs=138.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc-chhhhccC-CCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIG-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~-~~~~~~~~~dl~~~~------------~   95 (259)
                      +.+++++||||+|+||++++++|+++|+. |++..++..... ...+.... ..++.++.+|+++.+            +
T Consensus         4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (252)
T PRK06077          4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSL-VVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRY   82 (252)
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHc
Confidence            45789999999999999999999999998 766665332211 11111111 135667889998877            3


Q ss_pred             CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHh--C-CeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      .++|+|||+||......    .....+..+++|+.+...+++++.+.  . .+||++||...+.                
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------  146 (252)
T PRK06077         83 GVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR----------------  146 (252)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC----------------
Confidence            57899999999643311    11223567899999999999888754  2 2899999987664                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      +..+...|+.+|.+.|.+++.++++.  ++++.+++|+.+.++...... .............  .      .....+++
T Consensus       147 ~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~-~~~~~~~~~~~~~--~------~~~~~~~~  217 (252)
T PRK06077        147 PAYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLF-KVLGMSEKEFAEK--F------TLMGKILD  217 (252)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhh-hcccccHHHHHHh--c------CcCCCCCC
Confidence            44556789999999999999998875  689999999998876421000 0000000011100  1      11236899


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|+|+++++++
T Consensus       218 ~~dva~~~~~~~  229 (252)
T PRK06077        218 PEEVAEFVAAIL  229 (252)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.87  E-value=2.9e-20  Score=151.45  Aligned_cols=202  Identities=18%  Similarity=0.120  Sum_probs=144.0

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~-----------   94 (259)
                      ..+++|+++||||+|+||.+++++|+++|++ |+++.|+.....+.....+.  ..++.++.+|+++.+           
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~-V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~  120 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGAD-IAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVR  120 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999999999998 88888764332222222211  235778999999877           


Q ss_pred             -cCCcCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHHHh--C-CeEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 -LIEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                       ..++|++||+||.....     ...+++...+++|+.++..+++++.+.  . .++|++||...+..            
T Consensus       121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~------------  188 (290)
T PRK06701        121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEG------------  188 (290)
T ss_pred             HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCC------------
Confidence             35789999999864321     112345678999999999999988653  2 39999999877652            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                          ......|+.+|.+.+.+++.++.+.   +++++.++||.++.+.....   ............         ....
T Consensus       189 ----~~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~---~~~~~~~~~~~~---------~~~~  252 (290)
T PRK06701        189 ----NETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSD---FDEEKVSQFGSN---------TPMQ  252 (290)
T ss_pred             ----CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccc---cCHHHHHHHHhc---------CCcC
Confidence                1223569999999999999998764   89999999999988753211   111111111111         1223


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+.+++|+|+++++++
T Consensus       253 ~~~~~~dva~~~~~ll  268 (290)
T PRK06701        253 RPGQPEELAPAYVFLA  268 (290)
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            4678999999998875

>PRK06398 aldose dehydrogenase; Validated

Probab=99.87  E-value=3e-20  Score=149.02  Aligned_cols=155  Identities=19%  Similarity=0.094  Sum_probs=122.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ++++++++||||+|+||.++++.|+++|++ |+++.|+....          ..+.++.+|+++++            +.
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~-Vi~~~r~~~~~----------~~~~~~~~D~~~~~~i~~~~~~~~~~~~   71 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSN-VINFDIKEPSY----------NDVDYFKVDVSNKEQVIKGIDYVISKYG   71 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCcccc----------CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999998 88888854321          25788999999877            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....    ...++++..+++|+.++..+++++.+    .+. +||++||...+.               
T Consensus        72 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------  136 (258)
T PRK06398         72 RIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA---------------  136 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc---------------
Confidence            799999999965321    12234567789999999999887753    344 999999986554               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR  210 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~  210 (259)
                       +..+...|+.+|.+.+.+.+.++.+.  .++++.++||.+-.+.
T Consensus       137 -~~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~  180 (258)
T PRK06398        137 -VTRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPL  180 (258)
T ss_pred             -CCCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchH
Confidence             33445679999999999999998775  3899999999886653

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.87  E-value=8.3e-21  Score=150.44  Aligned_cols=190  Identities=16%  Similarity=0.091  Sum_probs=138.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||+++++.|+++|++ |+++.|+..+..+..... .....+++.+|+.+.+            ..+
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRGAAPLSQTLPGV-PADALRIGGIDLVDPQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCChHhHHHHHHHH-hhcCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            45789999999999999999999999998 999998754433333222 2235778889998866            347


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|+|||++|.....    ....+..+.+..|..++.++++++.    +.+. ++|++||...+..               
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---------------  147 (239)
T PRK12828         83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKA---------------  147 (239)
T ss_pred             cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccC---------------
Confidence            99999999865321    1123345678899999999988774    3445 9999999876652               


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                       ..+...|+.+|.+.+.+++.++..   .++++.++||++++++.....               .+    .  .....|+
T Consensus       148 -~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~---------------~~----~--~~~~~~~  205 (239)
T PRK12828        148 -GPGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRAD---------------MP----D--ADFSRWV  205 (239)
T ss_pred             -CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhc---------------CC----c--hhhhcCC
Confidence             233457999999999998887654   489999999999998741100               00    0  1122378


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      +++|+++++++++
T Consensus       206 ~~~dva~~~~~~l  218 (239)
T PRK12828        206 TPEQIAAVIAFLL  218 (239)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999988765

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.87  E-value=2.6e-20  Score=149.09  Aligned_cols=202  Identities=16%  Similarity=0.074  Sum_probs=142.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~   95 (259)
                      .+.+++++||||+|+||++++++|+++|++ |++.+|+.....+...+... ..++..+.+|+++.+            .
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~-vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAE-IIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDI   84 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            356889999999999999999999999998 88888864433222222111 235778899999877            3


Q ss_pred             CCcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||....    +....+++..+++|+.++..+++++.+    .+. +||++||.....              
T Consensus        85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~--------------  150 (254)
T PRK08085         85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSEL--------------  150 (254)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhcc--------------
Confidence            579999999996432    122345677899999999888887654    334 999999975322              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.+.+++.++.+   ++++++.++||++..+.......  ...+........+         ...
T Consensus       151 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~--~~~~~~~~~~~~p---------~~~  217 (254)
T PRK08085        151 --GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVE--DEAFTAWLCKRTP---------AAR  217 (254)
T ss_pred             --CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhcc--CHHHHHHHHhcCC---------CCC
Confidence              2233457999999999999999876   48999999999998875321110  0112222222222         123


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|++.++.+++
T Consensus       218 ~~~~~~va~~~~~l~  232 (254)
T PRK08085        218 WGDPQELIGAAVFLS  232 (254)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            567899999988775

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.86  E-value=4.6e-21  Score=152.92  Aligned_cols=204  Identities=15%  Similarity=0.108  Sum_probs=137.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++++||||+|+||++++++|+++|++ |+++.|+.....+.+...+.  ..++.++.+|+++.+            .
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAH-VVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF   82 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCE-EEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            56789999999999999999999999998 88888764322222211111  235788999999977            2


Q ss_pred             CCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh--C-CeEEEEecceeecCCCCCCCCCCCcCCCCCCCC
Q 025022           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV  172 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~  172 (259)
                      .++|++||+||....  ...++...+++|+.++.++++++.+.  . .++|++||........    .+       +...
T Consensus        83 ~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----~~-------~~~~  149 (248)
T PRK07806         83 GGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT----VK-------TMPE  149 (248)
T ss_pred             CCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc----cc-------CCcc
Confidence            479999999986432  23345677889999999999999864  2 2899999964321100    01       1122


Q ss_pred             CCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHH
Q 025022          173 RSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD  249 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  249 (259)
                      ...|+.+|.+.|.+++.++.+   .++++++++|+.+-++..        ..+......+. .  .........+++++|
T Consensus       150 ~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~--------~~~~~~~~~~~-~--~~~~~~~~~~~~~~d  218 (248)
T PRK07806        150 YEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVT--------ATLLNRLNPGA-I--EARREAAGKLYTVSE  218 (248)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchh--------hhhhccCCHHH-H--HHHHhhhcccCCHHH
Confidence            467999999999999998765   478899998876665431        11111000000 0  000011236899999


Q ss_pred             HHHHHHhhh
Q 025022          250 MVCKSCFLA  258 (259)
Q Consensus       250 ~a~~~~~~l  258 (259)
                      +++++++++
T Consensus       219 va~~~~~l~  227 (248)
T PRK07806        219 FAAEVARAV  227 (248)
T ss_pred             HHHHHHHHh
Confidence            999999875

>PLN02253 xanthoxin dehydrogenase

Probab=99.86  E-value=2.4e-20  Score=151.45  Aligned_cols=164  Identities=20%  Similarity=0.137  Sum_probs=123.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||++++++|+++|++ |++++|+.....+.........++.++.+|+++.+            ..
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g   93 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAK-VCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFG   93 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            466899999999999999999999999998 88888754332222222211246889999999987            35


Q ss_pred             CcCEEEEccCCCCcc------ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEeccee-ecCCCCCCCCCCCc
Q 025022           97 EVDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEV-YGDPLVHPQDESYW  164 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~-~~~~~~~~~~e~~~  164 (259)
                      ++|++||+||.....      ...++++..+++|+.++.++++++.+    .+. ++|++||... ++.           
T Consensus        94 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~-----------  162 (280)
T PLN02253         94 TLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG-----------  162 (280)
T ss_pred             CCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC-----------
Confidence            799999999865321      12345678899999999998887753    233 8899988653 321           


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                            .....|+.+|.+.|.+.+.++.+.   ++++..++|+.+.++.
T Consensus       163 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~  205 (280)
T PLN02253        163 ------LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTAL  205 (280)
T ss_pred             ------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccc
Confidence                  122469999999999999988764   7999999999998764

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.86  E-value=3.3e-21  Score=153.89  Aligned_cols=202  Identities=19%  Similarity=0.116  Sum_probs=139.3

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      ++++++||||+|+||++++++|+++|++ |+++.|+............ ...++.++.+|+.+.+            ..+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAK-VAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999998 9888886533222111111 1246888999999876            346


Q ss_pred             cCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||++|......    .....+..+++|+.++..+++++.    +.+. ++|++||...+..               
T Consensus        81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~---------------  145 (250)
T TIGR03206        81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVG---------------  145 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccC---------------
Confidence            899999998643211    122346678999999999887764    4455 9999999876652               


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcc--HHHHHHHHHHcCCCeEEecCCceeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                       ......|+.+|.+.+.+++.++++.   ++++++++|+.++++........  ....+........+.         ..
T Consensus       146 -~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  215 (250)
T TIGR03206       146 -SSGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPL---------GR  215 (250)
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCc---------cC
Confidence             2233569999999999999888764   89999999999988742110000  001122222222211         12


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+|+++.+++
T Consensus       216 ~~~~~dva~~~~~l~  230 (250)
T TIGR03206       216 LGQPDDLPGAILFFS  230 (250)
T ss_pred             CcCHHHHHHHHHHHc
Confidence            446799999998875

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.8e-20  Score=149.39  Aligned_cols=199  Identities=16%  Similarity=0.092  Sum_probs=135.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++||||+|+||.+++++|+++|+. |+...++...........+.  ..++.++.+|+++.+            +.+
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~-vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYA-VCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCe-EEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            468999999999999999999999998 66665432211111111111  235778999999876            357


Q ss_pred             cCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHHHh------C--CeEEEEecceeecCCCCCCCCCCCc
Q 025022           98 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV------G--ARILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        98 ~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~------~--~~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +|++||+||.....     ...++++..+++|+.++.++++++.+.      +  .++|++||...+..           
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-----------  149 (248)
T PRK06123         81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLG-----------  149 (248)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCC-----------
Confidence            89999999975421     122345678999999999988877542      1  27999999754321           


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          .+.....|+.+|.+.+.+++.++.+.   +++++++||+++++|.....   ..+..........++..       
T Consensus       150 ----~~~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~---~~~~~~~~~~~~~p~~~-------  215 (248)
T PRK06123        150 ----SPGEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASG---GEPGRVDRVKAGIPMGR-------  215 (248)
T ss_pred             ----CCCCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhcc---CCHHHHHHHHhcCCCCC-------
Confidence                11112359999999999999988764   89999999999999853211   11222223333333222       


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                        +.+++|+++++++++
T Consensus       216 --~~~~~d~a~~~~~l~  230 (248)
T PRK06123        216 --GGTAEEVARAILWLL  230 (248)
T ss_pred             --CcCHHHHHHHHHHHh
Confidence              237899999998765

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.86  E-value=3.9e-20  Score=147.57  Aligned_cols=200  Identities=14%  Similarity=0.084  Sum_probs=141.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccCCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~dl~~~~------------~   95 (259)
                      ++++++++||||+|+||.+++++|+++|+. |+++.|+.... .+.+...  ..++..+.+|+++.+            .
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-vi~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGAD-IVGAGRSEPSETQQQVEAL--GRRFLSLTADLSDIEAIKALVDSAVEEF   78 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCchHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            367899999999999999999999999998 88888753211 1111111  246888999999887            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||+||.....    ....++++.+++|+.++..+++++.+    .+ . ++|++||...+..            
T Consensus        79 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------  146 (248)
T TIGR01832        79 GHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQG------------  146 (248)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccC------------
Confidence            5799999999975431    12235667889999999999888753    33 3 9999999876652            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                          ......|+.+|.+.+.+++.++++.   ++++++++||.+..+........  ...........         ...
T Consensus       147 ----~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~~~~~~~~---------~~~  211 (248)
T TIGR01832       147 ----GIRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRAD--EDRNAAILERI---------PAG  211 (248)
T ss_pred             ----CCCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccC--hHHHHHHHhcC---------CCC
Confidence                2223469999999999999998874   79999999999987642110000  01111111111         123


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .|+..+|+|+++++++
T Consensus       212 ~~~~~~dva~~~~~l~  227 (248)
T TIGR01832       212 RWGTPDDIGGPAVFLA  227 (248)
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            5789999999998875

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.86  E-value=1.1e-20  Score=151.17  Aligned_cols=201  Identities=16%  Similarity=0.093  Sum_probs=138.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhhhccC-CCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++++||||+|+||.++++.|+++|+. |+++ .|+............. ...+.++.+|+++.+            .
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~   82 (254)
T PRK12746          4 LDGKVALVTGASRGIGRAIAMRLANDGAL-VAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNEL   82 (254)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999998 6664 5543222222222111 236788999999977            1


Q ss_pred             ------CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHh--CC-eEEEEecceeecCCCCCCCCCC
Q 025022           96 ------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        96 ------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                            .++|++||+||......    .....+..+++|+.++.++++++.+.  .. ++|++||..++.          
T Consensus        83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~----------  152 (254)
T PRK12746         83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL----------  152 (254)
T ss_pred             ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC----------
Confidence                  36999999999754321    12234667789999999999988763  33 899999987664          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.+.+++.++.+   .++++++++|+.++++........  ..+........         
T Consensus       153 ------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~--~~~~~~~~~~~---------  215 (254)
T PRK12746        153 ------GFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDD--PEIRNFATNSS---------  215 (254)
T ss_pred             ------CCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccC--hhHHHHHHhcC---------
Confidence                  3334467999999999999888765   479999999999988753210000  11111111111         


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....+++++|+++++.+++
T Consensus       216 ~~~~~~~~~dva~~~~~l~  234 (254)
T PRK12746        216 VFGRIGQVEDIADAVAFLA  234 (254)
T ss_pred             CcCCCCCHHHHHHHHHHHc
Confidence            1235678999999987764

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.86  E-value=2.9e-20  Score=149.60  Aligned_cols=198  Identities=13%  Similarity=0.066  Sum_probs=138.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      +++++||||+|+||.++++.|+++|++ |++++|+............ ...++.++.+|+.+.+            ..++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQ-LVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI   79 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999999998 9999886433222111111 1246788899999976            2479


Q ss_pred             CEEEEccCCCCccc-----cccChhHHHHHhhhhHHHHHHHHHH---hCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           99 DQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKR---VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        99 d~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      |+|||++|......     ..+...+.+++|+.++.++++.+.+   .+. ++|++||...+.                +
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~----------------~  143 (263)
T PRK06181         80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT----------------G  143 (263)
T ss_pred             CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC----------------C
Confidence            99999998754321     1222456789999999999988753   233 899999987664                2


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      ..+...|+.+|.+.+.+.+.++.+   .++++++++|+.+..+....    .    ..  ..+.+..  ..+.....+++
T Consensus       144 ~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~----~----~~--~~~~~~~--~~~~~~~~~~~  211 (263)
T PRK06181        144 VPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR----A----LD--GDGKPLG--KSPMQESKIMS  211 (263)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh----h----cc--ccccccc--cccccccCCCC
Confidence            334467999999999999887654   47999999999988764211    0    00  0111111  11112237899


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|+|+++++++
T Consensus       212 ~~dva~~i~~~~  223 (263)
T PRK06181        212 AEECAEAILPAI  223 (263)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.86  E-value=2.1e-20  Score=148.75  Aligned_cols=197  Identities=18%  Similarity=0.130  Sum_probs=140.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~v  101 (259)
                      +++++++||||+|+||.++++.|+++|++ |++++|+.+...+ +..   ..+..++.+|+++.+        ..++|+|
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~-~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~d~v   81 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGAR-VVAAARNAAALDR-LAG---ETGCEPLRLDVGDDAAIRAALAAAGAFDGL   81 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH-HHH---HhCCeEEEecCCCHHHHHHHHHHhCCCCEE
Confidence            66789999999999999999999999998 9999885432221 111   124667889998876        3468999


Q ss_pred             EEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----C--CeEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          102 YHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       102 i~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      ||+||.....    ....+.+..+.+|+.++.++++++.+.    +  .+||++||...+.                +..
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~  145 (245)
T PRK07060         82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV----------------GLP  145 (245)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC----------------CCC
Confidence            9999875431    122346667889999999999887542    3  3899999986554                223


Q ss_pred             CCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHH
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS  248 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  248 (259)
                      +...|+.+|.+.|.+++.++++   .+++++.++|++++++........  ......+....         ....+++++
T Consensus       146 ~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~  214 (245)
T PRK07060        146 DHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSD--PQKSGPMLAAI---------PLGRFAEVD  214 (245)
T ss_pred             CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccC--HHHHHHHHhcC---------CCCCCCCHH
Confidence            3467999999999999998875   379999999999998763211000  01111111111         123478999


Q ss_pred             HHHHHHHhhh
Q 025022          249 DMVCKSCFLA  258 (259)
Q Consensus       249 D~a~~~~~~l  258 (259)
                      |+++++.+++
T Consensus       215 d~a~~~~~l~  224 (245)
T PRK07060        215 DVAAPILFLL  224 (245)
T ss_pred             HHHHHHHHHc
Confidence            9999998875

>PRK07985 oxidoreductase; Provisional

Probab=99.86  E-value=4.1e-20  Score=150.88  Aligned_cols=201  Identities=19%  Similarity=0.147  Sum_probs=142.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC-CcchhhhccC--CCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIG--HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~--~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||+|+||.++++.|+++|++ |++..|+... ..+.+.....  ..++.++.+|+++.+            
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~~-Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  125 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGAD-VAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA  125 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999999998 8877664322 1222222211  235778899999876            


Q ss_pred             cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcCC
Q 025022           95 LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++++|++||+||....     .....+++..+++|+.++..+++++.+.   +.+||++||...+.              
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~--------------  191 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ--------------  191 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhcc--------------
Confidence            4679999999986421     1223456788999999999999888653   23999999987664              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+++.++.+   +++++.+++|+++.++......  .............+         ...
T Consensus       192 --~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~--~~~~~~~~~~~~~~---------~~r  258 (294)
T PRK07985        192 --PSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGG--QTQDKIPQFGQQTP---------MKR  258 (294)
T ss_pred             --CCCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccC--CCHHHHHHHhccCC---------CCC
Confidence              2223357999999999999999876   5899999999999998532110  01111222222111         123


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+|+++++++
T Consensus       259 ~~~pedva~~~~fL~  273 (294)
T PRK07985        259 AGQPAELAPVYVYLA  273 (294)
T ss_pred             CCCHHHHHHHHHhhh
Confidence            557899999998875

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.86  E-value=2.3e-20  Score=168.39  Aligned_cols=190  Identities=16%  Similarity=0.250  Sum_probs=128.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeE-EEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEV-IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      ...|+||||||+||||++|++.|.++|++ | +...+-.  +.+.+.            .++.   ..++|+|||+|+..
T Consensus       378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~-v~~~~~~l~--d~~~v~------------~~i~---~~~pd~Vih~Aa~~  439 (668)
T PLN02260        378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIA-YEYGKGRLE--DRSSLL------------ADIR---NVKPTHVFNAAGVT  439 (668)
T ss_pred             CCCceEEEECCCchHHHHHHHHHHhCCCe-EEeeccccc--cHHHHH------------HHHH---hhCCCEEEECCccc
Confidence            34589999999999999999999999988 6 3322100  001111            1111   13789999999976


Q ss_pred             Cc---cccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCC------CCCCCCCCCcCCCCCCCCCCchHHH
Q 025022          109 SP---IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP------LVHPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       109 ~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~------~~~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      ..   +.++.+++..+++|+.++.+++++|++.+++++++||.++|+..      ...+++|++    .+..+.+.|+.+
T Consensus       440 ~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~----~~~~~~~~Yg~s  515 (668)
T PLN02260        440 GRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFATGCIFEYDAKHPEGSGIGFKEED----KPNFTGSFYSKT  515 (668)
T ss_pred             CCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcccceecCCcccccccCCCCCcCC----CCCCCCChhhHH
Confidence            42   23456788999999999999999999999988889998998642      123666765    133345889999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCC-eEEecCCceeeeeeeHHHHHHHHHhh
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEP-LTVQAPGTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~~~~~~  257 (259)
                      |.++|.+++.+.     ++.++|+.++||.... ....++..++    .... +.+ +     .+..+++|++.+++.+
T Consensus       516 K~~~E~~~~~~~-----~~~~~r~~~~~~~~~~-~~~nfv~~~~----~~~~~~~v-p-----~~~~~~~~~~~~~~~l  578 (668)
T PLN02260        516 KAMVEELLREYD-----NVCTLRVRMPISSDLS-NPRNFITKIS----RYNKVVNI-P-----NSMTVLDELLPISIEM  578 (668)
T ss_pred             HHHHHHHHHhhh-----hheEEEEEEecccCCC-CccHHHHHHh----ccceeecc-C-----CCceehhhHHHHHHHH
Confidence            999999997763     3678888888864321 1122443333    3222 222 1     2456778888776554

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.86  E-value=3.2e-20  Score=150.57  Aligned_cols=204  Identities=14%  Similarity=0.123  Sum_probs=141.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||+++++.|+++|+. |++++|+.....+..+.... ..++.++.+|+.+.+            .
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGAK-VAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDF   85 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            356789999999999999999999999998 99888864332222222111 235788999999876            3


Q ss_pred             CCcCEEEEccCCCCccc-------------------cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceee
Q 025022           96 IEVDQIYHLACPASPIF-------------------YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~-------------------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~  151 (259)
                      .++|++||+||......                   ...+++..+++|+.++..+++++    ++.+. +||++||...+
T Consensus        86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~  165 (278)
T PRK08277         86 GPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAF  165 (278)
T ss_pred             CCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhc
Confidence            58999999999543211                   12346678889999988766554    33444 99999998766


Q ss_pred             cCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC---CccHHHHHHHH
Q 025022          152 GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNID---DGRVVSNFIAQ  225 (259)
Q Consensus       152 ~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~---~~~~~~~~~~~  225 (259)
                      .                +..+...|+.+|.+.+.+++.++.+.   ++++..++|+.+..+.....   ...........
T Consensus       166 ~----------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~  229 (278)
T PRK08277        166 T----------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANK  229 (278)
T ss_pred             C----------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHH
Confidence            4                33444679999999999999998765   79999999999988742110   00000111111


Q ss_pred             HHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          226 AIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .....+         ...+...+|+|+++++++
T Consensus       230 ~~~~~p---------~~r~~~~~dva~~~~~l~  253 (278)
T PRK08277        230 ILAHTP---------MGRFGKPEELLGTLLWLA  253 (278)
T ss_pred             HhccCC---------ccCCCCHHHHHHHHHHHc
Confidence            211111         223567899999998875

>PRK09242 tropinone reductase; Provisional

Probab=99.86  E-value=4.5e-20  Score=147.95  Aligned_cols=204  Identities=12%  Similarity=0.116  Sum_probs=144.0

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc---------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~---------   94 (259)
                      ++.+.+|+++||||+|+||.++++.|.++|++ |+++.|+.+...+..+..   ....++..+.+|+.+.+         
T Consensus         4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   82 (257)
T PRK09242          4 RWRLDGQTALITGASKGIGLAIAREFLGLGAD-VLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWV   82 (257)
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            34567899999999999999999999999998 999888643322222111   11346788899999876         


Q ss_pred             ---cCCcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                         +.++|++||+||....    .....+++..+.+|+.++..+++++.    +.+. ++|++||...+.          
T Consensus        83 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~----------  152 (257)
T PRK09242         83 EDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT----------  152 (257)
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC----------
Confidence               4679999999996432    12234567789999999999988774    3444 999999986554          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.+.+++.++.+   .+++++.++|+++.++.......  ...+........++.      
T Consensus       153 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~--~~~~~~~~~~~~~~~------  218 (257)
T PRK09242        153 ------HVRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLS--DPDYYEQVIERTPMR------  218 (257)
T ss_pred             ------CCCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccC--ChHHHHHHHhcCCCC------
Confidence                  3334467999999999999988765   48999999999998875321110  122222222222221      


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                         -+...+|++.++.+++
T Consensus       219 ---~~~~~~~va~~~~~l~  234 (257)
T PRK09242        219 ---RVGEPEEVAAAVAFLC  234 (257)
T ss_pred             ---CCcCHHHHHHHHHHHh
Confidence               1336789999887765

>PRK09186 flagellin modification protein A; Provisional

Probab=99.86  E-value=3.3e-20  Score=148.64  Aligned_cols=205  Identities=17%  Similarity=0.129  Sum_probs=137.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~------------   94 (259)
                      +++|+++||||+|+||+++++.|+++|++ |+++.|+.+.........   .....+.++.+|+.+.+            
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~   80 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK   80 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999998 888888654332222221   12235667899999877            


Q ss_pred             cCCcCEEEEccCCCCc-------cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASP-------IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                      ..++|++||+|+....       ..........+++|+.++..+++++    ++.+. +||++||...+..+.. ...+.
T Consensus        81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~-~~~~~  159 (256)
T PRK09186         81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKF-EIYEG  159 (256)
T ss_pred             cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccc-hhccc
Confidence            3458999999975321       1112335667788888877766655    44455 9999999765432211 11121


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                      .     +......|+.+|.+.+.+.+.++.+   .++++++++|+.++++..        ..+........+        
T Consensus       160 ~-----~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~--------~~~~~~~~~~~~--------  218 (256)
T PRK09186        160 T-----SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP--------EAFLNAYKKCCN--------  218 (256)
T ss_pred             c-----ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC--------HHHHHHHHhcCC--------
Confidence            1     2222346999999999999888775   479999999998876431        112222221111        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+++++|+|+++++++
T Consensus       219 -~~~~~~~~dva~~~~~l~  236 (256)
T PRK09186        219 -GKGMLDPDDICGTLVFLL  236 (256)
T ss_pred             -ccCCCCHHHhhhhHhhee
Confidence             123679999999998875

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.86  E-value=5e-20  Score=147.69  Aligned_cols=198  Identities=15%  Similarity=0.074  Sum_probs=138.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVD   99 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d   99 (259)
                      +++++||||+|+||+++++.|+++|++ |++++|+........+. +...++..+.+|+.+.+            +.++|
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~-v~~~~r~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   79 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDR-VLALDIDAAALAAFADA-LGDARFVPVACDLTDAASLAAALANAAAERGPVD   79 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHH-hcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999999999999998 99998865433222222 22346888999999987            24689


Q ss_pred             EEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       100 ~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ++||++|......    ........+.+|+.++..+++++.    +.+. +||++||...+..                 
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-----------------  142 (257)
T PRK07074         80 VLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA-----------------  142 (257)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC-----------------
Confidence            9999998654311    112334567789999988888773    3444 8999999643221                 


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      .....|+.+|.+.+.+++.++++.   +++++.++|++++++....... ....+.......         ....+|+++
T Consensus       143 ~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~  212 (257)
T PRK07074        143 LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVA-ANPQVFEELKKW---------YPLQDFATP  212 (257)
T ss_pred             CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccc-cChHHHHHHHhc---------CCCCCCCCH
Confidence            112369999999999999998664   6999999999998875321100 111222222111         123578999


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|+++++++++
T Consensus       213 ~d~a~~~~~l~  223 (257)
T PRK07074        213 DDVANAVLFLA  223 (257)
T ss_pred             HHHHHHHHHHc
Confidence            99999999875

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=6.6e-20  Score=146.86  Aligned_cols=200  Identities=18%  Similarity=0.075  Sum_probs=136.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +.+|+++||||+|+||.++++.|+++|++ |+++.++.....+.++.    .++.++.+|+++++            ..+
T Consensus         5 l~~k~~lItGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~l~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (255)
T PRK06463          5 FKGKVALITGGTRGIGRAIAEAFLREGAK-VAVLYNSAENEAKELRE----KGVFTIKCDVGNRDQVKKSKEVVEKEFGR   79 (255)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHh----CCCeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            45789999999999999999999999998 77776543322222222    25788999999987            357


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHH----HHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ....+++..+++|+.++..+++.    +++.+. +||++||...++.               
T Consensus        80 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~---------------  144 (255)
T PRK06463         80 VDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGT---------------  144 (255)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCC---------------
Confidence            99999999875321    12344667889999997666554    444444 9999999876642               


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID-DGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      +......|+.+|.+.+.+++.++.+   .+++++.++|+.+-.+..... .......+........+         ...+
T Consensus       145 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  215 (255)
T PRK06463        145 AAEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTV---------LKTT  215 (255)
T ss_pred             CCCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCC---------cCCC
Confidence            2233456999999999999999865   479999999998865532110 00011111112222221         1234


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ...+|+++++++++
T Consensus       216 ~~~~~va~~~~~l~  229 (255)
T PRK06463        216 GKPEDIANIVLFLA  229 (255)
T ss_pred             cCHHHHHHHHHHHc
Confidence            57899999998875

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2.2e-20  Score=149.55  Aligned_cols=199  Identities=18%  Similarity=0.115  Sum_probs=140.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ++++++++||||+|+||.++++.|+++|++ |+++.|+...  ...........+..+.+|+++.+            +.
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~-Vi~~~r~~~~--~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   88 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGAR-VALLDRSEDV--AEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFG   88 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHH--HHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            466899999999999999999999999998 9998886432  11111122345678999999877            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||++|.....    ....+.+..+++|+.++..+++++.+    .+. +||++||.....               
T Consensus        89 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------  153 (255)
T PRK06841         89 RIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVV---------------  153 (255)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhcc---------------
Confidence            789999999975421    12234567889999999999988764    344 999999975432               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +......|+.+|.+.+.+.+.++.+   .+++++.++||.+..+.....   .............+         ...+
T Consensus       154 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~---~~~~~~~~~~~~~~---------~~~~  220 (255)
T PRK06841        154 -ALERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKA---WAGEKGERAKKLIP---------AGRF  220 (255)
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccc---cchhHHHHHHhcCC---------CCCC
Confidence             2223357999999999999998876   479999999999887642211   00011111111111         2246


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      .+++|+++++++++
T Consensus       221 ~~~~~va~~~~~l~  234 (255)
T PRK06841        221 AYPEEIAAAALFLA  234 (255)
T ss_pred             cCHHHHHHHHHHHc
Confidence            79999999998875

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.85  E-value=5.6e-20  Score=147.75  Aligned_cols=202  Identities=17%  Similarity=0.131  Sum_probs=138.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ++++++++||||+|+||+++++.|+++|++ |++++|+.....+..+. . ..++.++.+|+++++            +.
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~-~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   79 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGAR-VAIVDIDADNGAAVAAS-L-GERARFIATDITDDAAIERAVATVVARFG   79 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHH-h-CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            356789999999999999999999999998 99998864332222222 1 246888999999987            45


Q ss_pred             CcCEEEEccCCCCc---cccccChhHHHHHhhhhHHHHHHHHHH---hCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           97 EVDQIYHLACPASP---IFYKYNPVKTIKTNVIGTLNMLGLAKR---VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        97 ~~d~vi~~a~~~~~---~~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      ++|++||+||....   .....+++..+++|+.++..+++++.+   .+. +||++||.....                +
T Consensus        80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~  143 (261)
T PRK08265         80 RVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF----------------A  143 (261)
T ss_pred             CCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc----------------C
Confidence            79999999996432   122345677889999999998887653   223 999999975432                2


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      ......|+.+|.+.+.+.+.++.+.   ++++++++||.+..+......... .......... .       .....+..
T Consensus       144 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~-~~~~~~~~~~-~-------~p~~r~~~  214 (261)
T PRK08265        144 QTGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGD-RAKADRVAAP-F-------HLLGRVGD  214 (261)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccc-hhHHHHhhcc-c-------CCCCCccC
Confidence            2234569999999999999988664   799999999987765321100000 0000111100 0       01123457


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      .+|+|+++++++
T Consensus       215 p~dva~~~~~l~  226 (261)
T PRK08265        215 PEEVAQVVAFLC  226 (261)
T ss_pred             HHHHHHHHHHHc
Confidence            899999998875

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=7e-20  Score=146.45  Aligned_cols=198  Identities=18%  Similarity=0.164  Sum_probs=136.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC-
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE-   97 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~-   97 (259)
                      ++++++||||+|+||+++++.|+++|++ |++..++.....+.+..... .++.++.+|+.+.+            ..+ 
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGAR-VVVNYHQSEDAAEALADELG-DRAIALQADVTDREQVQAMFATATEHFGKP   81 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            4589999999999999999999999998 77665433222222222221 46788999998876            233 


Q ss_pred             cCEEEEccCCCCc----------cccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCC
Q 025022           98 VDQIYHLACPASP----------IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        98 ~d~vi~~a~~~~~----------~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                      +|++||+||....          .....+.+..+++|+.++..+++++.+    .+. ++|++||.....          
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~----------  151 (253)
T PRK08642         82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN----------  151 (253)
T ss_pred             CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC----------
Confidence            9999999985310          112234567899999999999988853    344 999999864321          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.|.+++.++++   .++++..++||.+..+.....   .............+        
T Consensus       152 ------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~---~~~~~~~~~~~~~~--------  214 (253)
T PRK08642        152 ------PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAA---TPDEVFDLIAATTP--------  214 (253)
T ss_pred             ------CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhcc---CCHHHHHHHHhcCC--------
Confidence                  3345568999999999999999876   379999999998876532111   11122222222221        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+.+.+|+++++.+++
T Consensus       215 -~~~~~~~~~va~~~~~l~  232 (253)
T PRK08642        215 -LRKVTTPQEFADAVLFFA  232 (253)
T ss_pred             -cCCCCCHHHHHHHHHHHc
Confidence             123678999999998875

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.85  E-value=5.7e-20  Score=147.65  Aligned_cols=164  Identities=14%  Similarity=0.022  Sum_probs=125.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---CCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||+|+||.++++.|+++|++ |++++|+.+...+..+...   ...++.++.+|+++++            
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAA-VALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999999998 9888886543332222221   1246788999999877            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .+++|++||+||.....    ...++++..+++|+.++..+++++.+    .+. +||++||...+.             
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------  150 (260)
T PRK07063         84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFK-------------  150 (260)
T ss_pred             hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhcc-------------
Confidence            35799999999965321    12345677889999999988887643    344 999999976443             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                         +......|+.+|.+.+.+.+.++.+.   ++++..++||.+-.+.
T Consensus       151 ---~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~  195 (260)
T PRK07063        151 ---IIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQL  195 (260)
T ss_pred             ---CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChh
Confidence               22334579999999999999998764   7999999999887654

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.85  E-value=6.2e-20  Score=146.47  Aligned_cols=201  Identities=19%  Similarity=0.139  Sum_probs=141.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||+++++.|+++|++ |+++.|+........+... ...++.++.+|+.+.+            .
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            356799999999999999999999999998 8888876443222222211 1246888999999877            2


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||++|.....    ....+.+..++.|+.++..+++++.+    .+. ++|++||...+.              
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------  148 (250)
T PRK12939         83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALW--------------  148 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc--------------
Confidence            5799999999975431    12234566788999999999888753    234 999999976543              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+++.++.+   .+++++.++||.+..+.......   ..+........         ....
T Consensus       149 --~~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~---~~~~~~~~~~~---------~~~~  214 (250)
T PRK12939        149 --GAPKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA---DERHAYYLKGR---------ALER  214 (250)
T ss_pred             --CCCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC---hHHHHHHHhcC---------CCCC
Confidence              2233456999999999999988754   47999999999887765321111   12222222221         2234


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +++++|+++++++++
T Consensus       215 ~~~~~dva~~~~~l~  229 (250)
T PRK12939        215 LQVPDDVAGAVLFLL  229 (250)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            678999999998875

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.1e-19  Score=145.48  Aligned_cols=204  Identities=17%  Similarity=0.091  Sum_probs=140.8

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~-----------   94 (259)
                      .++++++++||||+|+||+++++.|+++|++ |+++.|+.....+.....+.  ..++..+.+|+.+++           
T Consensus         4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~   82 (254)
T PRK06114          4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGAD-VALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA   82 (254)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4467899999999999999999999999998 88888864332122211111  236778899999876           


Q ss_pred             -cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 -LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       +.++|++||+||.....    ....+.+..+++|+.++..+++++.    +.+. ++|++||...+...          
T Consensus        83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----------  152 (254)
T PRK06114         83 ELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVN----------  152 (254)
T ss_pred             HcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCC----------
Confidence             46789999999975431    1234567788999999988777653    3444 99999997643211          


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          +..+...|+.+|.+.+.+++.++.+   +++++++++||.+.++.....  .. ...........++         
T Consensus       153 ----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~--~~-~~~~~~~~~~~p~---------  216 (254)
T PRK06114        153 ----RGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRP--EM-VHQTKLFEEQTPM---------  216 (254)
T ss_pred             ----CCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccc--cc-hHHHHHHHhcCCC---------
Confidence                1112357999999999999998865   479999999999988753210  01 1111222222221         


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+..++|+++++++++
T Consensus       217 ~r~~~~~dva~~~~~l~  233 (254)
T PRK06114        217 QRMAKVDEMVGPAVFLL  233 (254)
T ss_pred             CCCcCHHHHHHHHHHHc
Confidence            12457899999998875

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.85  E-value=5.4e-20  Score=148.83  Aligned_cols=160  Identities=17%  Similarity=0.062  Sum_probs=120.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||||+||++++++|+++|+. |++.+|+.+......+. .  ..+.++.+|+++.+            ..+
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLDEALAKETAAE-L--GLVVGGPLDVTDPASFAAFLDAVEADLGP   78 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHH-h--ccceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            56789999999999999999999999998 88888754332221111 1  25788999999877            367


Q ss_pred             cCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||......    .....+..+++|+.++..+++.+.    +.+. +||++||...+.                
T Consensus        79 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------  142 (273)
T PRK07825         79 IDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKI----------------  142 (273)
T ss_pred             CCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccC----------------
Confidence            999999999754321    123456788999998888777653    4555 999999986543                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                      +......|+.+|.+.+.+.+.++.+   .++++++++|+.+..+
T Consensus       143 ~~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~  186 (273)
T PRK07825        143 PVPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTE  186 (273)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcch
Confidence            2334467999999999888777654   4899999999887654

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2.8e-20  Score=149.27  Aligned_cols=204  Identities=16%  Similarity=0.144  Sum_probs=141.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      ++++++++||||+|+||++++++|+++|+. |+++.|+.... ...+... ...++.++.+|+++.+            .
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF   81 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            367889999999999999999999999998 88888865433 2222211 1246889999999877            3


Q ss_pred             CCcCEEEEccCCCCcc---ccccChhHHHHHhhhhHHHHHHHHHH---hCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           96 IEVDQIYHLACPASPI---FYKYNPVKTIKTNVIGTLNMLGLAKR---VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      .++|+|||+||.....   ...++.+..+++|+.++..+.+.+.+   .+. +|+++||...+.                
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------  145 (258)
T PRK08628         82 GRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALT----------------  145 (258)
T ss_pred             CCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhcc----------------
Confidence            5799999999964321   11244667889999999998887753   223 899999976543                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccH--HHHHHHHHHcCCCeEEecCCceeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRV--VSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                      +..+...|+.+|.+.+.+++.++.+   .+++++.++|+.++++.........  ............  +. +     ..
T Consensus       146 ~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~--~~-~-----~~  217 (258)
T PRK08628        146 GQGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKI--PL-G-----HR  217 (258)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcC--Cc-c-----cc
Confidence            2234467999999999999998764   4799999999999997521100000  000111111111  11 1     13


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      ++.++|+|+++++++
T Consensus       218 ~~~~~dva~~~~~l~  232 (258)
T PRK08628        218 MTTAEEIADTAVFLL  232 (258)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            678899999998876

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.4e-19  Score=144.66  Aligned_cols=194  Identities=17%  Similarity=0.148  Sum_probs=138.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||+++++.|+++|+. |+++.|+...     .  ....++.++.+|+.+.+            ..+
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~g~~-v~~~~r~~~~-----~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   75 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAAGAT-VVVCGRRAPE-----T--VDGRPAEFHAADVRDPDQVAALVDAIVERHGR   75 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCChhh-----h--hcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            56799999999999999999999999998 8888886432     0  11246788999999876            357


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----h-CC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----V-GA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      +|+|||+||.....    .....++..+++|+.++..+++++.+    . +. +||++||...+.               
T Consensus        76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~---------------  140 (252)
T PRK07856         76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR---------------  140 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC---------------
Confidence            89999999965321    12234567899999999999988754    2 33 899999976543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                       +......|+.+|.+.+.+++.++.+.+  +++..++|+.+..+........  ...........+         ...+.
T Consensus       141 -~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~---------~~~~~  208 (252)
T PRK07856        141 -PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGD--AEGIAAVAATVP---------LGRLA  208 (252)
T ss_pred             -CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccC--HHHHHHHhhcCC---------CCCCc
Confidence             333446799999999999999987643  7899999998877642210000  111112222111         12245


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      ..+|+++++++++
T Consensus       209 ~p~~va~~~~~L~  221 (252)
T PRK07856        209 TPADIAWACLFLA  221 (252)
T ss_pred             CHHHHHHHHHHHc
Confidence            7899999988875

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.85  E-value=5.8e-20  Score=143.99  Aligned_cols=165  Identities=16%  Similarity=0.115  Sum_probs=128.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------   94 (259)
                      .+++++++|||||+.||.+++++|.++|++ |+.+.|+.++..+..+++..  ...++++.+|+++.+            
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~   81 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYN-LILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER   81 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence            467889999999999999999999999999 99999976654444333322  235788999999988            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      ...+|++|||||.....    ..+++.++++++|+.++..+..+.    .+.+. +||.++|...+-             
T Consensus        82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~-------------  148 (265)
T COG0300          82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLI-------------  148 (265)
T ss_pred             CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcC-------------
Confidence            23799999999977652    234556789999999988776665    44555 999999988665             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                         |.+....|++||+..-.+.+.+..+   .|+.++.+.||.+..+.
T Consensus       149 ---p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f  193 (265)
T COG0300         149 ---PTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEF  193 (265)
T ss_pred             ---CCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccc
Confidence               4444578999999988888877655   37999999998877654

>PRK12743 oxidoreductase; Provisional

Probab=99.85  E-value=9.6e-20  Score=145.98  Aligned_cols=197  Identities=17%  Similarity=0.129  Sum_probs=137.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++||||+|+||+++++.|+++|++ |+++.++.....+.+....  ....+.++.+|+++.+            +.+
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFD-IGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            579999999999999999999999998 7777554332222221111  1246888999999876            357


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC--CeEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      +|++||++|.....    ...++.+..+.+|+.++..+++++.+    .+  .+||++||.....               
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~---------------  145 (256)
T PRK12743         81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT---------------  145 (256)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC---------------
Confidence            99999999975431    12245677899999999999987754    22  2899999964322               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+++.++.+   .+++++.++||.+.++......    ...........+  +       ..+
T Consensus       146 -~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~----~~~~~~~~~~~~--~-------~~~  211 (256)
T PRK12743        146 -PLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD----SDVKPDSRPGIP--L-------GRP  211 (256)
T ss_pred             -CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC----hHHHHHHHhcCC--C-------CCC
Confidence             3445568999999999999988765   4799999999999987532111    111111111111  1       123


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      .+.+|+++++.+++
T Consensus       212 ~~~~dva~~~~~l~  225 (256)
T PRK12743        212 GDTHEIASLVAWLC  225 (256)
T ss_pred             CCHHHHHHHHHHHh
Confidence            47899999988765

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.85  E-value=9.3e-20  Score=150.82  Aligned_cols=180  Identities=14%  Similarity=0.122  Sum_probs=126.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||.++++.|+++|++ |+++.|+.....+..+... ....+.++.+|+++.+            ..
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   82 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGWH-VIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGK   82 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            46789999999999999999999999998 8888886443222222211 1246888999999877            23


Q ss_pred             CcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHH----hC--C-eEEEEecceeecCCC--CC--CCC
Q 025022           97 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VG--A-RILLTSTSEVYGDPL--VH--PQD  160 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~-~~i~~Ss~~~~~~~~--~~--~~~  160 (259)
                      ++|++||+||....     ....++++..+++|+.++..+++++.+    .+  . +||++||...+....  ..  +..
T Consensus        83 ~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~  162 (322)
T PRK07453         83 PLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAP  162 (322)
T ss_pred             CccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCc
Confidence            69999999996532     112345678899999999999887754    22  2 999999986543210  00  000


Q ss_pred             CC--Cc-------------CCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCC
Q 025022          161 ES--YW-------------GNVNPIGVRSCYDEGKRVAETLMFDYHRQH----GIEIRIARIFNTYGPR  210 (259)
Q Consensus       161 e~--~~-------------~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lr~~~v~g~~  210 (259)
                      ++  +.             ....+..+...|+.||.+.+.+.+.+++++    ++++++++||++++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~  231 (322)
T PRK07453        163 ADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP  231 (322)
T ss_pred             cchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence            00  00             001134566789999999998888887764    7999999999998643

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.85  E-value=4.4e-20  Score=147.27  Aligned_cols=195  Identities=14%  Similarity=0.081  Sum_probs=134.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcCE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQ  100 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d~  100 (259)
                      |+++||||+|+||.++++.|+++|++ |++++|+..... .+.... ..++.++.+|+.+.+            ..++|+
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~-~~~~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   77 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHK-VIATGRRQERLQ-ELKDEL-GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDV   77 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHH-HHHHHh-ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            68999999999999999999999998 999988643322 122211 236888999999876            247999


Q ss_pred             EEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          101 IYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       101 vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      +||+||....     .....+++..+++|+.++..+++.+    ++.+. ++|++||...+.                +.
T Consensus        78 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~  141 (248)
T PRK10538         78 LVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------------PY  141 (248)
T ss_pred             EEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCC----------------CC
Confidence            9999986421     1223456778899999977766655    44555 999999975432                33


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      .+...|+.+|.+.+.+.+.++.+.   ++++.+++||.+.|+......   +........  .   .+.    ...++..
T Consensus       142 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~---~~~~~~~~~--~---~~~----~~~~~~~  209 (248)
T PRK10538        142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVR---FKGDDGKAE--K---TYQ----NTVALTP  209 (248)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhh---ccCcHHHHH--h---hcc----ccCCCCH
Confidence            344679999999999999887654   699999999999875421100   000000000  0   000    1134688


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|+|+++++++
T Consensus       210 ~dvA~~~~~l~  220 (248)
T PRK10538        210 EDVSEAVWWVA  220 (248)
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.85  E-value=2.6e-19  Score=143.81  Aligned_cols=158  Identities=17%  Similarity=0.149  Sum_probs=122.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++++++||||+|+||+++++.|+++|++ |+++.|+.....        ..++.++.+|+.+.+            +.
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSRPDDL--------PEGVEFVAADLTTAEGCAAVARAVLERLG   76 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCChhhhc--------CCceeEEecCCCCHHHHHHHHHHHHHHcC
Confidence            366899999999999999999999999998 999988643211        236788999999877            35


Q ss_pred             CcCEEEEccCCCCc------cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           97 EVDQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        97 ~~d~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      ++|++||+||....      ....++++..+++|+.++..+++++    ++.+. ++|++||...+..            
T Consensus        77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~------------  144 (260)
T PRK06523         77 GVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLP------------  144 (260)
T ss_pred             CCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCC------------
Confidence            79999999985421      1223456778899999988776655    34444 8999999765431            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                         ...+...|+.+|.+.+.+++.++.+   .++++++++||.+.++.
T Consensus       145 ---~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~  189 (260)
T PRK06523        145 ---LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEA  189 (260)
T ss_pred             ---CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCcc
Confidence               1224567999999999999998765   37999999999998875

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.6e-19  Score=145.23  Aligned_cols=202  Identities=12%  Similarity=0.077  Sum_probs=139.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      ++++++++||||+|+||.++++.|+++|++ |++++|+.....+..+... ...++.++.+|+++++            +
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGAD-VLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF   85 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            467899999999999999999999999997 9999886433222211111 1246788999999887            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH-----hCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR-----VGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|+|||+||.....    ....+.+..+++|+.++.++++++.+     .+. ++|++||.....             
T Consensus        86 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~-------------  152 (263)
T PRK07814         86 GRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL-------------  152 (263)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC-------------
Confidence            5799999999864321    12245677899999999999999864     334 899999964332             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                         +..+...|+.+|.+.+.+++.++.+.  +++++.++|+.+..+.......  -..+........+         ...
T Consensus       153 ---~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~~  218 (263)
T PRK07814        153 ---AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAA--NDELRAPMEKATP---------LRR  218 (263)
T ss_pred             ---CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccC--CHHHHHHHHhcCC---------CCC
Confidence               22344679999999999999988764  4788899998887653211000  0111111111111         112


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+++++++++
T Consensus       219 ~~~~~~va~~~~~l~  233 (263)
T PRK07814        219 LGDPEDIAAAAVYLA  233 (263)
T ss_pred             CcCHHHHHHHHHHHc
Confidence            457899999998865

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=7.4e-20  Score=145.15  Aligned_cols=192  Identities=15%  Similarity=0.013  Sum_probs=137.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +.+++++||||+|+||.+++++|+++|+. |+++.|+.....+...... ...++.++.+|+++.+            +.
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGVN-VGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELG   83 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45689999999999999999999999997 9999886543222221111 1236888999998877            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||++|.....    ....+.++.+++|+.++.++.+++..    .+. ++|++||...+.               
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~---------------  148 (239)
T PRK07666         84 SIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQK---------------  148 (239)
T ss_pred             CccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhcc---------------
Confidence            799999999875431    12234567889999999988887753    344 899999976543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+++.++.+   .++++++++|+.+.++.....           ....      +.   ...+
T Consensus       149 -~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~-----------~~~~------~~---~~~~  207 (239)
T PRK07666        149 -GAAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL-----------GLTD------GN---PDKV  207 (239)
T ss_pred             -CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc-----------cccc------cC---CCCC
Confidence             2233456999999999998887754   489999999999888642110           0000      01   1235


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      +..+|+|++++.++
T Consensus       208 ~~~~~~a~~~~~~l  221 (239)
T PRK07666        208 MQPEDLAEFIVAQL  221 (239)
T ss_pred             CCHHHHHHHHHHHH
Confidence            78899999988765

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.85  E-value=9.8e-20  Score=145.49  Aligned_cols=200  Identities=12%  Similarity=0.060  Sum_probs=139.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccCCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++|+++||||+|+||++++++|+++|++ |+++.|+.... ...++..  ..++.++.+|+++++            +
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~-vv~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGAD-IVGVGVAEAPETQAQVEAL--GRKFHFITADLIQQKDIDSIVSQAVEVM   81 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCchHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence            366899999999999999999999999999 88887743211 1111111  246788999999988            4


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC--CeEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||+||.....    ....+++..+++|+.++..+.+++.+    .+  .+||++||...+..            
T Consensus        82 g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~------------  149 (251)
T PRK12481         82 GHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQG------------  149 (251)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCC------------
Confidence            6799999999975431    12345677899999998888876643    33  39999999876542            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                          ......|+.+|.+.+.+.+.++.+   +|+++..++||.+-.+.......  ............+         ..
T Consensus       150 ----~~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~--~~~~~~~~~~~~p---------~~  214 (251)
T PRK12481        150 ----GIRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRA--DTARNEAILERIP---------AS  214 (251)
T ss_pred             ----CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhccc--ChHHHHHHHhcCC---------CC
Confidence                122346999999999999988875   58999999999887654211000  0111112222111         11


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+...+|+++++.+++
T Consensus       215 ~~~~peeva~~~~~L~  230 (251)
T PRK12481        215 RWGTPDDLAGPAIFLS  230 (251)
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            2567899999998875

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.85  E-value=4.6e-20  Score=145.09  Aligned_cols=190  Identities=15%  Similarity=0.115  Sum_probs=130.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIY  102 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~vi  102 (259)
                      ++|+++||||+|+||+++++.|+++ ++ |+++.|+..... .+...  ...++++.+|+.+.+        ..++|+||
T Consensus         2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~-V~~~~r~~~~~~-~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   76 (227)
T PRK08219          2 ERPTALITGASRGIGAAIARELAPT-HT-LLLGGRPAERLD-ELAAE--LPGATPFPVDLTDPEAIAAAVEQLGRLDVLV   76 (227)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHhh-CC-EEEEeCCHHHHH-HHHHH--hccceEEecCCCCHHHHHHHHHhcCCCCEEE
Confidence            3579999999999999999999999 88 999998643221 11111  135788999999876        23699999


Q ss_pred             EccCCCCccc----cccChhHHHHHhhhhHHHHHH----HHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC
Q 025022          103 HLACPASPIF----YKYNPVKTIKTNVIGTLNMLG----LAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS  174 (259)
Q Consensus       103 ~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~----~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (259)
                      |++|......    ...+....++.|+.+...+.+    .+++.+.++|++||...+.                +..+..
T Consensus        77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~----------------~~~~~~  140 (227)
T PRK08219         77 HNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLR----------------ANPGWG  140 (227)
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcC----------------cCCCCc
Confidence            9998754311    122345668888888555544    4444545999999987654                223346


Q ss_pred             chHHHHHHHHHHHHHHHHHh-C-CcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQH-G-IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~~-~-~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      .|+.+|.+.+.+++.++.+. + +++..++|+.+.++..        ..+...  .+..       .....+++++|+++
T Consensus       141 ~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~--------~~~~~~--~~~~-------~~~~~~~~~~dva~  203 (227)
T PRK08219        141 SYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQ--------RGLVAQ--EGGE-------YDPERYLRPETVAK  203 (227)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHh--------hhhhhh--hccc-------cCCCCCCCHHHHHH
Confidence            79999999999988876543 4 7888888876655421        111110  0111       11235799999999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      ++++++
T Consensus       204 ~~~~~l  209 (227)
T PRK08219        204 AVRFAV  209 (227)
T ss_pred             HHHHHH
Confidence            999875

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.85  E-value=2e-19  Score=143.24  Aligned_cols=198  Identities=18%  Similarity=0.149  Sum_probs=136.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++++||||+|+||+++++.|+++|+. |+++.|+...........+  ...++.++.+|+.+.+            .
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEF   81 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            56789999999999999999999999998 7777665432221221111  1346788899999877            2


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEeccee-ecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEV-YGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~-~~~~~~~~~~e~~~~  165 (259)
                      .++|+|||++|.....    .....++..+..|+.++.++++++.+.    +. +||++||... ++.            
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~------------  149 (248)
T PRK05557         82 GGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGN------------  149 (248)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCC------------
Confidence            4789999999865431    122345677889999999998888653    44 8999999743 331            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                           .....|+.+|.+.+.+++.++++   .++++++++|+.+.++....    ....+........+         ..
T Consensus       150 -----~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~----~~~~~~~~~~~~~~---------~~  211 (248)
T PRK05557        150 -----PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDA----LPEDVKEAILAQIP---------LG  211 (248)
T ss_pred             -----CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccc----cChHHHHHHHhcCC---------CC
Confidence                 22356999999999988887654   47999999999886654221    11222222222222         12


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++++|+++++.+++
T Consensus       212 ~~~~~~~va~~~~~l~  227 (248)
T PRK05557        212 RLGQPEEIASAVAFLA  227 (248)
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            3568899999987764

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.84  E-value=1.8e-19  Score=143.48  Aligned_cols=199  Identities=16%  Similarity=0.098  Sum_probs=136.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC-CCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~-~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      |++++++||||+|+||++++++|+++|+. |++..++ .....+.++... ....+..+.+|+.+.+            .
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFK-VVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEV   79 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999998 7665432 222222222211 1235677889999876            3


Q ss_pred             CCcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +++|++||+||....    +....+++..+++|+.++..+++++    ++.+. +||++||.....              
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~--------------  145 (246)
T PRK12938         80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK--------------  145 (246)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccC--------------
Confidence            579999999997542    1223456778899999977776655    44555 999999975332              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+.+.++.+   .++++++++|+.+.+|....    ..+.....+....+         ...
T Consensus       146 --~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~----~~~~~~~~~~~~~~---------~~~  210 (246)
T PRK12938        146 --GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA----IRPDVLEKIVATIP---------VRR  210 (246)
T ss_pred             --CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhh----cChHHHHHHHhcCC---------ccC
Confidence              2234467999999999988887754   47999999999998875321    11222333322222         122


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+++++++++
T Consensus       211 ~~~~~~v~~~~~~l~  225 (246)
T PRK12938        211 LGSPDEIGSIVAWLA  225 (246)
T ss_pred             CcCHHHHHHHHHHHc
Confidence            457899999988765

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.84  E-value=7.7e-20  Score=146.64  Aligned_cols=205  Identities=15%  Similarity=0.116  Sum_probs=134.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh---ccC--CCceeEeecccCccc----------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK---WIG--HPRFELIRHDVTEPL----------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~dl~~~~----------   94 (259)
                      +++++++||||+|+||.++++.|+++|++ |+++.++.....+..+.   .+.  ..++.++.+|+++.+          
T Consensus         6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~-vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~   84 (257)
T PRK12744          6 LKGKVVLIAGGAKNLGGLIARDLAAQGAK-AVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK   84 (257)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCc-EEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence            45689999999999999999999999998 66666543322221111   111  236788999999887          


Q ss_pred             --cCCcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 --LIEVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                        ++++|++||+||....    .....+++..+++|+.++..+++++.+.   +.++++++|.....             
T Consensus        85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~-------------  151 (257)
T PRK12744         85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA-------------  151 (257)
T ss_pred             HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc-------------
Confidence              3579999999996432    1223456778999999999999988653   12666654332221             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +......|+.+|.+.|.+++.++++.   ++++++++||.+.++...+...   ..... .  ..... ........
T Consensus       152 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~---~~~~~-~--~~~~~-~~~~~~~~  221 (257)
T PRK12744        152 ---FTPFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEG---AEAVA-Y--HKTAA-ALSPFSKT  221 (257)
T ss_pred             ---cCCCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccc---cchhh-c--ccccc-cccccccC
Confidence               11123569999999999999998774   6999999999998764221110   00000 0  00000 00111112


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+.+++|+++++.+++
T Consensus       222 ~~~~~~dva~~~~~l~  237 (257)
T PRK12744        222 GLTDIEDIVPFIRFLV  237 (257)
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            4779999999998875

>PRK08589 short chain dehydrogenase; Validated

Probab=99.84  E-value=1.2e-19  Score=146.68  Aligned_cols=163  Identities=18%  Similarity=0.105  Sum_probs=122.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||.++++.|+++|++ |+++.|+ ....+...+... ..++..+.+|+++.+            +.
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~-vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAY-VLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            56889999999999999999999999998 9988886 322222222111 235788999999886            45


Q ss_pred             CcCEEEEccCCCCc-c-c---cccChhHHHHHhhhhHHHHHHHHH----HhCCeEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASP-I-F---YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-~-~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.... . .   .....+..+++|+.++..+++++.    +.+.+||++||...+.               
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------  146 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQA---------------  146 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcC---------------
Confidence            79999999997532 1 1   123356778899999887777654    3334999999976543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                       +......|+.+|.+.+.+++.++.+.   +++++.+.||.+..+.
T Consensus       147 -~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~  191 (272)
T PRK08589        147 -ADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPL  191 (272)
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCch
Confidence             22234679999999999999998754   7999999999987764

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.4e-19  Score=144.10  Aligned_cols=200  Identities=23%  Similarity=0.168  Sum_probs=138.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~   95 (259)
                      .++++++||||+|+||+++++.|+++|++ |+++.++.......+.+.+  ...++.++.+|+.+.+            .
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAF   81 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999999998 7776664332221111111  1246888999999876            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh--CC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      .++|++||+||.....    ....+.+..+++|+.++..+++++.+.  .. ++|++||...+.                
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------  145 (245)
T PRK12937         82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL----------------  145 (245)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC----------------
Confidence            5799999999965321    123346678889999999999888653  22 899999875443                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +..+...|+.+|.+.+.+++.++.+.   ++++++++|+.+-.+.....   ........+....+..         .+.
T Consensus       146 ~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~---~~~~~~~~~~~~~~~~---------~~~  213 (245)
T PRK12937        146 PLPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG---KSAEQIDQLAGLAPLE---------RLG  213 (245)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc---CCHHHHHHHHhcCCCC---------CCC
Confidence            33344679999999999999887653   78999999998876542111   1122233333222211         244


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      +++|+++++.+++
T Consensus       214 ~~~d~a~~~~~l~  226 (245)
T PRK12937        214 TPEEIAAAVAFLA  226 (245)
T ss_pred             CHHHHHHHHHHHc
Confidence            7799999988765

>PRK08324 short chain dehydrogenase; Validated

Probab=99.84  E-value=2.2e-20  Score=168.31  Aligned_cols=209  Identities=18%  Similarity=0.113  Sum_probs=146.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+.+++++||||+|+||.++++.|+++|+. |++++|+...............++.++.+|+++.+            ..
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~-Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g  497 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGAC-VVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFG  497 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            356799999999999999999999999998 99998865432222222111136788999999877            34


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhC--CeEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|+|||+||.....    .....++..+++|+.++..+++++.    +.+  .+||++||...+.              
T Consensus       498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~--------------  563 (681)
T PRK08324        498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVN--------------  563 (681)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccC--------------
Confidence            799999999965432    1234466788999999999977664    333  3899999976543              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEecccc-CCCCCCCCccHHHHHHHHHHcCCCe----EEecCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTY-GPRMNIDDGRVVSNFIAQAIRGEPL----TVQAPG  238 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~-g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  238 (259)
                        +......|+.+|.+.+.+++.++.+.   ++++++++|+.+| +++.....  ....  .....+...    ..+..+
T Consensus       564 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~--~~~~--~~~~~g~~~~~~~~~~~~~  637 (681)
T PRK08324        564 --PGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGE--WIEA--RAAAYGLSEEELEEFYRAR  637 (681)
T ss_pred             --CCCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccch--hhhh--hhhhccCChHHHHHHHHhc
Confidence              22334679999999999999988764   5999999999998 55421110  1000  011111111    123344


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+.+++++|+|+++++++
T Consensus       638 ~~l~~~v~~~DvA~a~~~l~  657 (681)
T PRK08324        638 NLLKREVTPEDVAEAVVFLA  657 (681)
T ss_pred             CCcCCccCHHHHHHHHHHHh
Confidence            55678999999999998875

>PRK08264 short chain dehydrogenase; Validated

Probab=99.84  E-value=4e-19  Score=140.81  Aligned_cols=158  Identities=19%  Similarity=0.108  Sum_probs=123.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQ  100 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~  100 (259)
                      +.+++++||||+|+||+++++.|+++|+ . |+++.|+.....+      ...++.++.+|+.+.+        ...+|+
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~-V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~id~   76 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAK-VYAAARDPESVTD------LGPRVVPLQLDVTDPASVAAAAEAASDVTI   76 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCccc-EEEEecChhhhhh------cCCceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence            4568999999999999999999999999 6 9999886543221      1247889999999876        346899


Q ss_pred             EEEccCCCC-c----cccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          101 IYHLACPAS-P----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       101 vi~~a~~~~-~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      |||++|... .    .....+....+++|+.++..+++++.+    .+. ++|++||...+.                +.
T Consensus        77 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~----------------~~  140 (238)
T PRK08264         77 LVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV----------------NF  140 (238)
T ss_pred             EEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc----------------CC
Confidence            999999732 1    112344567788999999999888653    444 899999987654                33


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                      .+...|+.+|.+.+.+.+.++.+.   +++++++||+.+.++.
T Consensus       141 ~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~  183 (238)
T PRK08264        141 PNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM  183 (238)
T ss_pred             CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence            344679999999999999887653   8999999999997764

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.84  E-value=1.9e-19  Score=144.38  Aligned_cols=201  Identities=15%  Similarity=0.172  Sum_probs=140.1

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~-----------   94 (259)
                      ..+++++++||||+|+||.++++.|+++|+. |+++.|+ . ..+.+...+.  ..++.++.+|+.+.+           
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~   87 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG-T-NWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALE   87 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC-c-HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3466899999999999999999999999998 8888875 2 2222222211  246888999999977           


Q ss_pred             -cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 -LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       ..++|++||+||.....    ....+++..+++|+.++..+++++.    +.+. ++|++||...+.            
T Consensus        88 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------  155 (258)
T PRK06935         88 EFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQ------------  155 (258)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhcc------------
Confidence             35789999999965421    1233566788999999888876664    3444 999999987654            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          +......|+.+|.+.+.+++.++++.   +++++.++||.+..+........  ...........+         .
T Consensus       156 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~~~---------~  220 (258)
T PRK06935        156 ----GGKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRAD--KNRNDEILKRIP---------A  220 (258)
T ss_pred             ----CCCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccC--hHHHHHHHhcCC---------C
Confidence                22233579999999999999998754   79999999999887642211000  011111111111         1


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+...+|++.++.+++
T Consensus       221 ~~~~~~~dva~~~~~l~  237 (258)
T PRK06935        221 GRWGEPDDLMGAAVFLA  237 (258)
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            23667899999998875

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.84  E-value=2.2e-19  Score=143.81  Aligned_cols=201  Identities=15%  Similarity=0.129  Sum_probs=140.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+.+++++||||+|+||.++++.|+++|+. |++++|+............ ...++.++.+|+++.+            .
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~   86 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL   86 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            356899999999999999999999999998 8888775433221111111 1235778899999877            3


Q ss_pred             CCcCEEEEccCCCCcc---ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           96 IEVDQIYHLACPASPI---FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      .++|++||+||.....   ...++++..+++|+.++.++++++.    +.+. ++|++||.....               
T Consensus        87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------------  151 (255)
T PRK06113         87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN---------------  151 (255)
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccC---------------
Confidence            5789999999965432   1224456678999999999999885    3344 999999976432               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+++.++.+   .+++++++.||.+..+.....   ..+.+........++         ..+
T Consensus       152 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~---~~~~~~~~~~~~~~~---------~~~  218 (255)
T PRK06113        152 -KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV---ITPEIEQKMLQHTPI---------RRL  218 (255)
T ss_pred             -CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccc---cCHHHHHHHHhcCCC---------CCC
Confidence             3334467999999999999998765   478999999998877642210   112222222222221         225


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ..++|+++++++++
T Consensus       219 ~~~~d~a~~~~~l~  232 (255)
T PRK06113        219 GQPQDIANAALFLC  232 (255)
T ss_pred             cCHHHHHHHHHHHc
Confidence            58899999998875

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.84  E-value=2.2e-19  Score=143.75  Aligned_cols=202  Identities=14%  Similarity=0.035  Sum_probs=138.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||.++++.|+++|++ |+++.|+.....+..+.... ..++.++.+|+.+.+            ..
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAK-VVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFG   82 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            45789999999999999999999999998 99998865433222222111 235778899999876            35


Q ss_pred             CcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|++||+||....     +...++.+..+++|+.++..+++++    ++.+. ++|++||...+..             
T Consensus        83 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~-------------  149 (254)
T PRK07478         83 GLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA-------------  149 (254)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc-------------
Confidence            79999999996432     1122346778999998888776654    34444 8999999765431             


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+.+.++.+.   +++++.++||.+-.+.......  ............+         ...
T Consensus       150 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~~  216 (254)
T PRK07478        150 --GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGD--TPEALAFVAGLHA---------LKR  216 (254)
T ss_pred             --CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccC--CHHHHHHHHhcCC---------CCC
Confidence              22344679999999999999988764   6999999999987763211100  0111111111111         122


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+++++++++
T Consensus       217 ~~~~~~va~~~~~l~  231 (254)
T PRK07478        217 MAQPEEIAQAALFLA  231 (254)
T ss_pred             CcCHHHHHHHHHHHc
Confidence            457899999998875

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.84  E-value=5.3e-20  Score=147.56  Aligned_cols=162  Identities=12%  Similarity=0.064  Sum_probs=121.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVD   99 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d   99 (259)
                      +|+++||||+|+||.++++.|+++|++ |++++|+.....+..+......++.++.+|+++.+            ...+|
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id   80 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGAT-LGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD   80 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence            479999999999999999999999998 88888864332222221111126889999999876            34589


Q ss_pred             EEEEccCCCCccc-----cccChhHHHHHhhhhHHHHHH----HHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022          100 QIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus       100 ~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~----~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      ++||+||......     ...+.+..+++|+.++..+++    .+++.+. +||++||...+.                +
T Consensus        81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~----------------~  144 (257)
T PRK07024         81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVR----------------G  144 (257)
T ss_pred             EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC----------------C
Confidence            9999999754211     123467789999999998877    4445555 999999976443                2


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      ......|+.+|.+.+.+.+.++.+   +++++++++|+.+.++.
T Consensus       145 ~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~  188 (257)
T PRK07024        145 LPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPM  188 (257)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCch
Confidence            223356999999999999888643   58999999999998874

>PRK12742 oxidoreductase; Provisional

Probab=99.84  E-value=2.4e-19  Score=141.99  Aligned_cols=196  Identities=15%  Similarity=0.109  Sum_probs=135.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~v  101 (259)
                      +++++++||||+|+||++++++|+++|++ |+++.++.....+.+...   .+..++.+|+++.+        ..++|++
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~l   79 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFTYAGSKDAAERLAQE---TGATAVQTDSADRDAVIDVVRKSGALDIL   79 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHH---hCCeEEecCCCCHHHHHHHHHHhCCCcEE
Confidence            56789999999999999999999999998 777655322222222111   24567889998866        3568999


Q ss_pred             EEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh--CC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC
Q 025022          102 YHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS  174 (259)
Q Consensus       102 i~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (259)
                      ||+||.....    ....+++..+++|+.++..++..+.+.  .. ++|++||......               +..+..
T Consensus        80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~---------------~~~~~~  144 (237)
T PRK12742         80 VVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRM---------------PVAGMA  144 (237)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccC---------------CCCCCc
Confidence            9999865321    123456789999999999997666543  23 9999999653211               334456


Q ss_pred             chHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV  251 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  251 (259)
                      .|+.+|.+.+.+++.++.+   .++++++++||.+..+.... ..   + .........+         ...+...+|++
T Consensus       145 ~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~-~~---~-~~~~~~~~~~---------~~~~~~p~~~a  210 (237)
T PRK12742        145 AYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPA-NG---P-MKDMMHSFMA---------IKRHGRPEEVA  210 (237)
T ss_pred             chHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcccc-cc---H-HHHHHHhcCC---------CCCCCCHHHHH
Confidence            7999999999999988765   47999999999998764221 10   1 1111111111         11245789999


Q ss_pred             HHHHhhh
Q 025022          252 CKSCFLA  258 (259)
Q Consensus       252 ~~~~~~l  258 (259)
                      +++.+++
T Consensus       211 ~~~~~l~  217 (237)
T PRK12742        211 GMVAWLA  217 (237)
T ss_pred             HHHHHHc
Confidence            9988875

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.5e-19  Score=147.86  Aligned_cols=206  Identities=17%  Similarity=0.081  Sum_probs=141.6

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------   94 (259)
                      ..++++++++||||+|+||.++++.|.++|++ |+++.|+.....+..+.......+..+.+|+++.+            
T Consensus         4 ~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (296)
T PRK05872          4 MTSLAGKVVVVTGAARGIGAELARRLHARGAK-LALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVER   82 (296)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999998 99888864432222222211234566779999876            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEecceeecCCCCCCCCCCCcCC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +.++|++||+||.....    ...++.+..+++|+.++..+++++.+.    +.+||++||...+.              
T Consensus        83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~--------------  148 (296)
T PRK05872         83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA--------------  148 (296)
T ss_pred             cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC--------------
Confidence            36799999999975431    122345778999999999999887542    23899999986554              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+.+.++.+   .+++++++.|+.+..+........ . ..........+.+       ...
T Consensus       149 --~~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~-~-~~~~~~~~~~~~p-------~~~  217 (296)
T PRK05872        149 --AAPGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADAD-L-PAFRELRARLPWP-------LRR  217 (296)
T ss_pred             --CCCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhcccc-c-hhHHHHHhhCCCc-------ccC
Confidence              2233467999999999999988754   589999999998877642211100 0 1111111111111       123


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      ++..+|+++++++++
T Consensus       218 ~~~~~~va~~i~~~~  232 (296)
T PRK05872        218 TTSVEKCAAAFVDGI  232 (296)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            568899999988765

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.4e-19  Score=143.79  Aligned_cols=192  Identities=14%  Similarity=0.046  Sum_probs=136.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      ++++++||||+|+||++++++|+++|++ |++++|+.....+..+... ...++.++.+|+++.+            ..+
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWD-LALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4679999999999999999999999998 9999986543222211111 1246888999999877            356


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||++|.....    ....+.+..+++|+.++..+++.+    ++.+. ++|++||...+.                
T Consensus        84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------------  147 (241)
T PRK07454         84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARN----------------  147 (241)
T ss_pred             CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCc----------------
Confidence            99999999865321    122345677889999988887766    33444 899999987665                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +..+...|+.+|.+.+.+.+.++.+   .+++++++||+.+-.+......               ......    ...++
T Consensus       148 ~~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~---------------~~~~~~----~~~~~  208 (241)
T PRK07454        148 AFPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTET---------------VQADFD----RSAML  208 (241)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccccc---------------cccccc----cccCC
Confidence            2333467999999999998887644   4899999999998776421100               000000    11357


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      ..+|+|+++++++
T Consensus       209 ~~~~va~~~~~l~  221 (241)
T PRK07454        209 SPEQVAQTILHLA  221 (241)
T ss_pred             CHHHHHHHHHHHH
Confidence            8899999998875

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.9e-19  Score=144.42  Aligned_cols=196  Identities=15%  Similarity=0.061  Sum_probs=133.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------cC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ++|+++||||+|+||+++++.|+++|+. |+++.++.....+.+...+  ...++.++.+|+++.+            ..
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   86 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFD-VAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG   86 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999998 7776654322211111111  1246888999999876            35


Q ss_pred             CcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|+|||+||....    .....+.+..+++|+.++..+++++.+.    .. ++|+++|...+.               
T Consensus        87 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~---------------  151 (258)
T PRK09134         87 PITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN---------------  151 (258)
T ss_pred             CCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC---------------
Confidence            68999999986543    1223456788999999999999887653    22 788888764433               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                       +......|+.+|.+.|.+.+.++++.  .++++.++||.+..+...     ....+. ......+   .+      ...
T Consensus       152 -~~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~-----~~~~~~-~~~~~~~---~~------~~~  215 (258)
T PRK09134        152 -LNPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ-----SPEDFA-RQHAATP---LG------RGS  215 (258)
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc-----ChHHHH-HHHhcCC---CC------CCc
Confidence             22223579999999999999988765  389999999888764311     111121 1111111   11      135


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      +++|+|+++++++
T Consensus       216 ~~~d~a~~~~~~~  228 (258)
T PRK09134        216 TPEEIAAAVRYLL  228 (258)
T ss_pred             CHHHHHHHHHHHh
Confidence            7899999988875

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.84  E-value=2.5e-19  Score=144.69  Aligned_cols=162  Identities=18%  Similarity=0.063  Sum_probs=121.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cCCcC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIEVD   99 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~~d   99 (259)
                      |+++||||+|+||++++++|+++|++ |++++|+.....+...... ...++.++.+|+.+.+            ..++|
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWR-LALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID   79 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            58999999999999999999999998 8888886543332222211 1246788999998876            35799


Q ss_pred             EEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       100 ~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ++||+||......    ...+.+..+++|+.++..+++.+    ++.+. +||++||...+.                +.
T Consensus        80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~----------------~~  143 (270)
T PRK05650         80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM----------------QG  143 (270)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC----------------CC
Confidence            9999999754321    12345567889988888776654    55565 999999986554                33


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCC
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM  211 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~  211 (259)
                      .....|+.+|.+.+.+.+.++.+.   ++++++++|+.+.++..
T Consensus       144 ~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~  187 (270)
T PRK05650        144 PAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLL  187 (270)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcc
Confidence            344679999999999998888763   79999999999988753

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.84  E-value=2.9e-19  Score=142.88  Aligned_cols=202  Identities=19%  Similarity=0.121  Sum_probs=138.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||.++++.|+++|++ |++++|+........+.... ...+.++.+|+.+.+            +
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAH-VIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERH   83 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            467789999999999999999999999998 99998864432222222111 235678899998877            3


Q ss_pred             CCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||+||....     +....+.+..+++|+.++..+++++    ++.+. ++|++||...+.             
T Consensus        84 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-------------  150 (252)
T PRK07035         84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVS-------------  150 (252)
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcC-------------
Confidence            579999999985321     1222345678899999998887766    33444 999999875432             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+++.++.+.   +++++.+.||.+..+........  ...........+         ..
T Consensus       151 ---~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~--~~~~~~~~~~~~---------~~  216 (252)
T PRK07035        151 ---PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKN--DAILKQALAHIP---------LR  216 (252)
T ss_pred             ---CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCC--HHHHHHHHccCC---------CC
Confidence               23344679999999999999998654   79999999998876542211000  111222222111         11


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+...+|+++++++++
T Consensus       217 ~~~~~~~va~~~~~l~  232 (252)
T PRK07035        217 RHAEPSEMAGAVLYLA  232 (252)
T ss_pred             CcCCHHHHHHHHHHHh
Confidence            2457899999998865

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.84  E-value=3.2e-19  Score=142.92  Aligned_cols=203  Identities=15%  Similarity=0.086  Sum_probs=142.5

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------   94 (259)
                      ..+++++++||||+|+||+++++.|+++|+. |+++.|+............ ...++.++.+|+++++            
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAH-VLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            3467899999999999999999999999998 9999886433222221111 1235889999999877            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      ..++|++||++|.....    ....+++..+++|+.++..+++.+.+    .+. ++|++||...+.             
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~-------------  152 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQV-------------  152 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhcc-------------
Confidence            35789999999965421    12235667889999999999866643    455 999999975433             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +......|+.+|.+.+.+++.++.+   .++++..++|+.+.++.......  -..+........+         ..
T Consensus       153 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~  218 (256)
T PRK06124        153 ---ARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAA--DPAVGPWLAQRTP---------LG  218 (256)
T ss_pred             ---CCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhcc--ChHHHHHHHhcCC---------CC
Confidence               2223367999999999999988765   37999999999999875321100  0112222222111         12


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++++|+++++++++
T Consensus       219 ~~~~~~~~a~~~~~l~  234 (256)
T PRK06124        219 RWGRPEEIAGAAVFLA  234 (256)
T ss_pred             CCCCHHHHHHHHHHHc
Confidence            3678999999998875

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.84  E-value=2.1e-19  Score=143.12  Aligned_cols=199  Identities=16%  Similarity=0.082  Sum_probs=133.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhhhccC-CCceeEeecccCccc------------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++||||+|+||.+++++|+++|++ |+++ .|+.....+....... ..++..+.+|+.+.+            ..+
T Consensus         1 ~~~~lItGa~g~iG~~l~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   79 (247)
T PRK09730          1 MAIALVTGGSRGIGRATALLLAQEGYT-VAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEP   79 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            368999999999999999999999998 7664 4533222211111111 235788999999887            357


Q ss_pred             cCEEEEccCCCCccc-----cccChhHHHHHhhhhHHHHHHHHHHh--------CCeEEEEecceeecCCCCCCCCCCCc
Q 025022           98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +|+|||++|......     ...+.+..+++|+.++..+++++...        +.+||++||...+..           
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~-----------  148 (247)
T PRK09730         80 LAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLG-----------  148 (247)
T ss_pred             CCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccC-----------
Confidence            899999999653211     12335678899999998877765432        127999999754431           


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          .+.....|+.+|...+.+++.++.+   .+++++++||+.+++|......   .+..........++..       
T Consensus       149 ----~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------  214 (247)
T PRK09730        149 ----APGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGG---EPGRVDRVKSNIPMQR-------  214 (247)
T ss_pred             ----CCCcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCC---CHHHHHHHHhcCCCCC-------
Confidence                1111235999999999999888764   4899999999999998632211   1122222222222211       


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                        ..+++|+++++++++
T Consensus       215 --~~~~~dva~~~~~~~  229 (247)
T PRK09730        215 --GGQPEEVAQAIVWLL  229 (247)
T ss_pred             --CcCHHHHHHHHHhhc
Confidence              237899999998765

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.9e-19  Score=144.85  Aligned_cols=203  Identities=16%  Similarity=0.069  Sum_probs=138.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||+++++.|+++|++ |+++.|+... .+..+... ...++.++.+|+.+.+            +.
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGAN-LILLDISPEI-EKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCCHHH-HHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            56789999999999999999999999998 9998886431 11111111 1246778999999876            45


Q ss_pred             CcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||......    ...+.+..+++|+.++..+++++.+    .+. ++|++||......              
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--------------  147 (263)
T PRK08226         82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMV--------------  147 (263)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccc--------------
Confidence            7899999999654311    2234556789999999999887653    334 8999998643110              


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC----CccHHHHHHHHHHcCCCeEEecCCce
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNID----DGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                       +......|+.+|.+.+.+++.++.+.   +++++.++||.+.++.....    ...........+....+         
T Consensus       148 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p---------  217 (263)
T PRK08226        148 -ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIP---------  217 (263)
T ss_pred             -CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCC---------
Confidence             22234579999999999999988764   79999999999988642110    00001122222222222         


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+...+|+++++.+++
T Consensus       218 ~~~~~~~~~va~~~~~l~  235 (263)
T PRK08226        218 LRRLADPLEVGELAAFLA  235 (263)
T ss_pred             CCCCCCHHHHHHHHHHHc
Confidence            123458899999988775

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.84  E-value=4.8e-19  Score=140.09  Aligned_cols=193  Identities=16%  Similarity=0.097  Sum_probs=138.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCcc-c-----cCCcCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-L-----LIEVDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~-~-----~~~~d~vi~  103 (259)
                      +++++++||||+|+||+++++.|+++|++ |+++.|+.....        ..++.++.+|+.++ +     ..++|++||
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~id~lv~   73 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQGAQ-VYGVDKQDKPDL--------SGNFHFLQLDLSDDLEPLFDWVPSVDILCN   73 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHCCCE-EEEEeCCccccc--------CCcEEEEECChHHHHHHHHHhhCCCCEEEE
Confidence            56789999999999999999999999998 888887643211        23678889999876 2     568999999


Q ss_pred             ccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCC
Q 025022          104 LACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR  173 (259)
Q Consensus       104 ~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~  173 (259)
                      +||....     +....+.+..+++|+.++.++++++..    .+. +||++||...+.                +....
T Consensus        74 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~  137 (235)
T PRK06550         74 TAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFV----------------AGGGG  137 (235)
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc----------------CCCCC
Confidence            9985421     122345677899999999999888753    333 899999976543                12233


Q ss_pred             CchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHH
Q 025022          174 SCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDM  250 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  250 (259)
                      ..|+.+|.+.+.+.+.++.+.   ++++++++|+++.++.......  ...+........+         ...+...+|+
T Consensus       138 ~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~~  206 (235)
T PRK06550        138 AAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFE--PGGLADWVARETP---------IKRWAEPEEV  206 (235)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccC--chHHHHHHhccCC---------cCCCCCHHHH
Confidence            569999999999999888764   8999999999998875321100  1112222222221         1235678999


Q ss_pred             HHHHHhhh
Q 025022          251 VCKSCFLA  258 (259)
Q Consensus       251 a~~~~~~l  258 (259)
                      |+++++++
T Consensus       207 a~~~~~l~  214 (235)
T PRK06550        207 AELTLFLA  214 (235)
T ss_pred             HHHHHHHc
Confidence            99998875

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.84  E-value=2.1e-19  Score=144.08  Aligned_cols=200  Identities=14%  Similarity=0.044  Sum_probs=139.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +.+++++||||+|+||+++++.|+++|+. |+++.|+.....+...... ...++.++.+|+++.+            ..
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG   85 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            66899999999999999999999999998 9999886443222211111 1246788999998876            34


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh-------------CCeEEEEecceeecCCCCCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV-------------GARILLTSTSEVYGDPLVHPQ  159 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~-------------~~~~i~~Ss~~~~~~~~~~~~  159 (259)
                      ++|++||++|.....    ....+++..+++|+.++..+++++...             +.++|++||...+.       
T Consensus        86 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------  158 (258)
T PRK06949         86 TIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR-------  158 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC-------
Confidence            799999999964321    122356778899999999988876431             12899999976553       


Q ss_pred             CCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 025022          160 DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       160 ~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (259)
                               +......|+.+|.+.+.+++.++.+   .++++++++||.++++......   ............+     
T Consensus       159 ---------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~---~~~~~~~~~~~~~-----  221 (258)
T PRK06949        159 ---------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHW---ETEQGQKLVSMLP-----  221 (258)
T ss_pred             ---------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhcc---ChHHHHHHHhcCC-----
Confidence                     2334467999999999999998765   4799999999999987632110   0111111111111     


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ...+...+|+++++.+++
T Consensus       222 ----~~~~~~p~~~~~~~~~l~  239 (258)
T PRK06949        222 ----RKRVGKPEDLDGLLLLLA  239 (258)
T ss_pred             ----CCCCcCHHHHHHHHHHHh
Confidence                123456799999988875

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.84  E-value=2.3e-19  Score=144.24  Aligned_cols=163  Identities=15%  Similarity=0.077  Sum_probs=122.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc-----------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL-----------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~-----------~~   96 (259)
                      +++++++||||+|.||+++++.|+++|++ |++++|+.....+..+...  ...++.++.+|+++.+           +.
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGAD-VILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            67899999999999999999999999998 8888886443222221111  1246788999999987           35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....    ...++++..+++|+.+...+++++    ++.+. +||++||...+.               
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~---------------  149 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKE---------------  149 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccC---------------
Confidence            799999999965431    223456778899988877776554    44444 999999986543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP  209 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~  209 (259)
                       +......|+.+|.+.+.+.+.++.+.   |+++..+.||.+..+
T Consensus       150 -~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~  193 (263)
T PRK08339        150 -PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTD  193 (263)
T ss_pred             -CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccH
Confidence             22334569999999999999988764   799999999988765

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.2e-19  Score=150.56  Aligned_cols=197  Identities=11%  Similarity=0.069  Sum_probs=136.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||.++++.|+++|++ |+++.|+.....+..++.. ...++.++.+|+++.+            +
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~-Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAK-VVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            366789999999999999999999999998 8888886433222222111 1246778999999987            4


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ...++.+..+++|+.+...+++.+    ++.+. +||++||...+.              
T Consensus        84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~--------------  149 (334)
T PRK07109         84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYR--------------  149 (334)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhcc--------------
Confidence            5799999999965321    123445678888888777655544    44544 999999987765              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                        +......|+.+|.+.+.+.+.++.+.     ++++++++|+.+..|...        . .........       ...
T Consensus       150 --~~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~--------~-~~~~~~~~~-------~~~  211 (334)
T PRK07109        150 --SIPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFD--------W-ARSRLPVEP-------QPV  211 (334)
T ss_pred             --CCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhh--------h-hhhhccccc-------cCC
Confidence              22334679999999999988876542     589999999988776411        1 111111100       112


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..++..+|+|+++++++
T Consensus       212 ~~~~~pe~vA~~i~~~~  228 (334)
T PRK07109        212 PPIYQPEVVADAILYAA  228 (334)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            24568899999998875

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=99.84  E-value=3.8e-20  Score=140.05  Aligned_cols=221  Identities=22%  Similarity=0.241  Sum_probs=172.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC-CcchhhhccCC------CceeEeecccCccc-------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIGH------PRFELIRHDVTEPL-------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~~------~~~~~~~~dl~~~~-------~~~   97 (259)
                      .+..||||-||+-|++|++.|+.+|++ |+++.|+.+. +..+++.+..+      ....++.+|++|..       .-+
T Consensus        28 rkvALITGItGQDGSYLaEfLL~KgYe-VHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik  106 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSKGYE-VHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK  106 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhCCce-eeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence            467999999999999999999999999 9999887654 33455554432      46778899999988       457


Q ss_pred             cCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC----eEEEEecceeecCCCCCCCCCCCcCCCCCCCCC
Q 025022           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR  173 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~  173 (259)
                      ++-|+|+|+..+.....+-++..-++...|+.+++++.+.++.    ||-..||...||...+.|..|..     |..|.
T Consensus       107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~T-----PFyPR  181 (376)
T KOG1372|consen  107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETT-----PFYPR  181 (376)
T ss_pred             chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCC-----CCCCC
Confidence            8999999998887777777888888889999999999988764    99999999999998999999987     99999


Q ss_pred             CchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-CccHHHHHHHHHHcCC-CeEEecCCceeeeeeeHHHHH
Q 025022          174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID-DGRVVSNFIAQAIRGE-PLTVQAPGTQTRSFCYVSDMV  251 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a  251 (259)
                      ++|+.+|...-+.+-.+++.+++-.+.=-..+.-.|..... ..+-++.-+..+.-++ .-...|+.+..+||.|..|.+
T Consensus       182 SPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dYV  261 (376)
T KOG1372|consen  182 SPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAGDYV  261 (376)
T ss_pred             ChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhHHHH
Confidence            99999999999999899888876555444445555654321 1223333333443332 223348888999999999999


Q ss_pred             HHHHhhh
Q 025022          252 CKSCFLA  258 (259)
Q Consensus       252 ~~~~~~l  258 (259)
                      +|++.++
T Consensus       262 EAMW~mL  268 (376)
T KOG1372|consen  262 EAMWLML  268 (376)
T ss_pred             HHHHHHH
Confidence            9999875

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.6e-19  Score=145.89  Aligned_cols=156  Identities=22%  Similarity=0.187  Sum_probs=122.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      ++++++||||+|+||++++++|+++|++ |+++.|+.....       ...+++++.+|+++.+            +.++
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~   74 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYR-VFGTSRNPARAA-------PIPGVELLELDVTDDASVQAAVDEVIARAGRI   74 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCChhhcc-------ccCCCeeEEeecCCHHHHHHHHHHHHHhCCCC
Confidence            4578999999999999999999999998 999988643221       1236789999999877            3578


Q ss_pred             CEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        99 d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      |++||+||......    ...+.+..+++|+.++..+++.+    ++.+. +||++||...+.                +
T Consensus        75 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------------~  138 (270)
T PRK06179         75 DVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL----------------P  138 (270)
T ss_pred             CEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC----------------C
Confidence            99999999764321    22346788999999988888875    45566 999999976543                2


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      ......|+.+|.+.+.+.+.++.+   .++++++++|+.+.++.
T Consensus       139 ~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~  182 (270)
T PRK06179        139 APYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNF  182 (270)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCccccc
Confidence            223357999999999999888654   58999999999998765

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.84  E-value=3.2e-19  Score=142.64  Aligned_cols=201  Identities=16%  Similarity=0.075  Sum_probs=135.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc-CCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++|+++||||+|+||.++++.|++.|++ |++.. ++.....+...+.. ....+..+.+|+.+.+            .
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLANDGAL-VAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL   80 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHh
Confidence            35789999999999999999999999998 77764 33222111111111 1234667788998765            0


Q ss_pred             ------CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHh--CC-eEEEEecceeecCCCCCCCCCC
Q 025022           96 ------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        96 ------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                            .++|++||+||......    ..+.++..+++|+.++..+++++.+.  .. +||++||...+.          
T Consensus        81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~----------  150 (252)
T PRK12747         81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI----------  150 (252)
T ss_pred             hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc----------
Confidence                  26999999999643211    12335778889999999999877653  22 999999987554          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +......|+.+|++.+.+++.++.+.   +++++.+.||.+.++........   ..........        .
T Consensus       151 ------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~---~~~~~~~~~~--------~  213 (252)
T PRK12747        151 ------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSD---PMMKQYATTI--------S  213 (252)
T ss_pred             ------CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccC---HHHHHHHHhc--------C
Confidence                  22334679999999999999987654   89999999999988752110000   0011111100        0


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....+.+++|+++++.+++
T Consensus       214 ~~~~~~~~~dva~~~~~l~  232 (252)
T PRK12747        214 AFNRLGEVEDIADTAAFLA  232 (252)
T ss_pred             cccCCCCHHHHHHHHHHHc
Confidence            1124678999999998875

>PRK06196 oxidoreductase; Provisional

Probab=99.83  E-value=1.4e-19  Score=149.37  Aligned_cols=175  Identities=15%  Similarity=0.094  Sum_probs=125.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++++++||||+|+||.+++++|+++|++ |+++.|+.....+.....   .++.++.+|+++.+            ..
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~   98 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGR   98 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence            356789999999999999999999999998 888888644322222221   24788999999877            35


Q ss_pred             CcCEEEEccCCCCcc--ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           97 EVDQIYHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      ++|++||+||.....  ......+..+++|+.++..+++++    ++.+. +||++||.......  ...++  .....+
T Consensus        99 ~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~--~~~~~--~~~~~~  174 (315)
T PRK06196         99 RIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSP--IRWDD--PHFTRG  174 (315)
T ss_pred             CCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCC--CCccc--cCccCC
Confidence            799999999965321  223456788999999977776654    44544 99999997533211  11111  000113


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM  211 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~  211 (259)
                      ..+...|+.+|.+.+.+.+.++++   .++++++++||++.++..
T Consensus       175 ~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~  219 (315)
T PRK06196        175 YDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQ  219 (315)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCcc
Confidence            445578999999999999888765   479999999999998853

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.83  E-value=2.9e-19  Score=141.57  Aligned_cols=164  Identities=15%  Similarity=0.043  Sum_probs=122.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +.+++++||||+|+||++++++|+++|++ |+++.|+........+......++.++.+|+.+.+            +.+
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGG   82 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            45689999999999999999999999998 99998865332222222211146888999999876            247


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH---hCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR---VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      +|+|||++|.....    ....+.+..+++|+.++..+++++.+   .+. ++|++||...+.                +
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~  146 (237)
T PRK07326         83 LDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN----------------F  146 (237)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc----------------C
Confidence            99999999875431    12234567789999999998888754   234 899999875443                2


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      ......|..+|.+.+.+.+.++.+   .+++++++||+.+.++.
T Consensus       147 ~~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~  190 (237)
T PRK07326        147 FAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHF  190 (237)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcc
Confidence            233456999999999988887644   48999999999987754

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.83  E-value=3.2e-19  Score=142.71  Aligned_cols=201  Identities=14%  Similarity=0.012  Sum_probs=139.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      ++++++++||||+|+||.++++.|+++|++ |+++.|+............ ...++..+.+|+++++            +
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            467899999999999999999999999998 8888886433222211111 1236778899999877            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC--CeEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||+||.....    ....+++..+++|+.++..+++++.+    .+  .++|++||.......           
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-----------  153 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN-----------  153 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC-----------
Confidence            5899999999975432    12234567788999999999887743    32  279999886532100           


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         .+.....|+.+|.+.+.+.+.++.+.   |+++..++||.+-.+....    . ...........+         ..
T Consensus       154 ---~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~----~-~~~~~~~~~~~~---------~~  216 (253)
T PRK05867        154 ---VPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEP----Y-TEYQPLWEPKIP---------LG  216 (253)
T ss_pred             ---CCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCccccc----c-hHHHHHHHhcCC---------CC
Confidence               11223579999999999999998753   8999999999987764221    1 112222222211         11


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+...+|+|+++++++
T Consensus       217 r~~~p~~va~~~~~L~  232 (253)
T PRK05867        217 RLGRPEELAGLYLYLA  232 (253)
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            3568899999998875

>PRK08643 acetoin reductase; Validated

Probab=99.83  E-value=4.2e-19  Score=142.28  Aligned_cols=162  Identities=19%  Similarity=0.125  Sum_probs=120.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      +++++||||+|+||.++++.|+++|++ |++++|+............. ..++.++.+|+++++            ..++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFK-VAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            579999999999999999999999998 98888864432222221111 246778999999987            3579


Q ss_pred             CEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hC--CeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        99 d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      |++||+||......    ..++.+..+++|+.++..+++.+.+    .+  .++|++||...+.                
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------  144 (256)
T PRK08643         81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV----------------  144 (256)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc----------------
Confidence            99999998653211    1234567888999998877776643    22  2899999975433                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      +......|+.+|.+.+.+++.++.+   .|++++.++|+++.+|.
T Consensus       145 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~  189 (256)
T PRK08643        145 GNPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPM  189 (256)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChh
Confidence            1223457999999999999988865   47999999999998864

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.83  E-value=5.3e-19  Score=142.40  Aligned_cols=165  Identities=13%  Similarity=0.000  Sum_probs=124.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~   95 (259)
                      .+.+++++||||+|+||.+++++|+++|++ |+++.|+.....+....... ..++.++.+|+++.+            .
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   85 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            467799999999999999999999999999 88887764433222222111 236888999999887            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ...++.+..+++|+.++..+.+++.+    .+. +||++||.....              
T Consensus        86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------  151 (265)
T PRK07097         86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSEL--------------  151 (265)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccC--------------
Confidence            5699999999976432    22345677888999998888776643    444 999999964321              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                        +..+...|+.+|.+.+.+++.++++.   +++++.++||.+..+.
T Consensus       152 --~~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~  196 (265)
T PRK07097        152 --GRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQ  196 (265)
T ss_pred             --CCCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccc
Confidence              22334679999999999999998764   8999999999998875

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.83  E-value=4.4e-19  Score=142.06  Aligned_cols=198  Identities=18%  Similarity=0.121  Sum_probs=134.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++|+||||+|+||.+++++|+++|++ |++++|+........+. .   ...++.+|+++.+            ..+
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~   79 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGAT-VVVGDIDPEAGKAAADE-V---GGLFVPTDVTDEDAVNALFDTAAETYGS   79 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHH-c---CCcEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            67899999999999999999999999998 98888854322211111 1   2367889999876            257


Q ss_pred             cCEEEEccCCCCcc------ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecce-eecCCCCCCCCCCCcC
Q 025022           98 VDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSE-VYGDPLVHPQDESYWG  165 (259)
Q Consensus        98 ~d~vi~~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~-~~~~~~~~~~~e~~~~  165 (259)
                      +|++||+||.....      ......+..+++|+.++..+++.+.    +.+. ++|++||.. +++             
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g-------------  146 (255)
T PRK06057         80 VDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMG-------------  146 (255)
T ss_pred             CCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccC-------------
Confidence            89999999865321      1123356788899999888777653    3444 899999864 444             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|++.+.+.+.++.+   .++++++++||++.+|............. .....  ..+       ..
T Consensus       147 ---~~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~-~~~~~--~~~-------~~  213 (255)
T PRK06057        147 ---SATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERA-ARRLV--HVP-------MG  213 (255)
T ss_pred             ---CCCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHH-HHHHh--cCC-------CC
Confidence               2223456999999888888876554   37999999999998875321100001111 11111  111       12


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+..++|+++++.+++
T Consensus       214 ~~~~~~~~a~~~~~l~  229 (255)
T PRK06057        214 RFAEPEEIAAAVAFLA  229 (255)
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            4788999999988765

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.83  E-value=3e-19  Score=141.67  Aligned_cols=165  Identities=16%  Similarity=0.123  Sum_probs=121.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------   94 (259)
                      .|++++++||||+|+||+++++.|+++|++ |+++.|+.....+....+.  ....+.++.+|+.+.+            
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~   81 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGAT-VILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA   81 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence            467799999999999999999999999998 9999987543322222211  1234567788886531            


Q ss_pred             --c-CCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCC
Q 025022           95 --L-IEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 --~-~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                        . .++|+|||+||....     +....++...+++|+.++..+++++.+    .+. +++++||.....         
T Consensus        82 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~---------  152 (239)
T PRK08703         82 EATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGET---------  152 (239)
T ss_pred             HHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEecccccc---------
Confidence              2 578999999996422     112234566789999998888887743    344 999999864321         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH----GIEIRIARIFNTYGPR  210 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lr~~~v~g~~  210 (259)
                             +......|+.+|.+.+.+++.++.+.    ++++++++||.+.+|.
T Consensus       153 -------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~  198 (239)
T PRK08703        153 -------PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQ  198 (239)
T ss_pred             -------CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcc
Confidence                   33334679999999999999988764    5899999999999985

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.83  E-value=4.6e-19  Score=141.03  Aligned_cols=198  Identities=12%  Similarity=0.049  Sum_probs=134.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ++++++++||||+|+||+++++.|+++|+. |++..|+.....+.... . ..++.++.+|+.+.+            +.
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAI-VGLHGTRVEKLEALAAE-L-GERVKIFPANLSDRDEVKALGQKAEADLE   79 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHH-h-CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            456789999999999999999999999997 88777754332221111 1 236788899999876            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....    ....+++..+++|+.++.++++++.+    .+. +||++||...+..              
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~--------------  145 (245)
T PRK12936         80 GVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTG--------------  145 (245)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcC--------------
Confidence            799999999975421    12345677889999999988887643    344 8999999754331              


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                        ......|+.+|.+.+.+++.++++   .++++++++|+.+..+....    .............+         ...+
T Consensus       146 --~~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~----~~~~~~~~~~~~~~---------~~~~  210 (245)
T PRK12936        146 --NPGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGK----LNDKQKEAIMGAIP---------MKRM  210 (245)
T ss_pred             --CCCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcc----cChHHHHHHhcCCC---------CCCC
Confidence              112346999999999888887665   47999999999876653211    10111111111111         1225


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ...+|+++++.+++
T Consensus       211 ~~~~~ia~~~~~l~  224 (245)
T PRK12936        211 GTGAEVASAVAYLA  224 (245)
T ss_pred             cCHHHHHHHHHHHc
Confidence            57899999987764

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.3e-19  Score=146.93  Aligned_cols=157  Identities=19%  Similarity=0.183  Sum_probs=118.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------------cCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------------LIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------------~~~~   98 (259)
                      +++++||||+|+||+++++.|.++|++ |++++|+..... .+.    ..+++++.+|+++.+             ..++
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~-Vi~~~r~~~~~~-~l~----~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~i   77 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWR-VFATCRKEEDVA-ALE----AEGLEAFQLDYAEPESIAALVAQVLELSGGRL   77 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHH-HHH----HCCceEEEccCCCHHHHHHHHHHHHHHcCCCc
Confidence            578999999999999999999999998 999888643221 121    136788999999876             1468


Q ss_pred             CEEEEccCCCCccc----cccChhHHHHHhhhh----HHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIG----TLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        99 d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~----~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      |++||+||......    ..++.+..+++|+.+    +..++..+++.+. +||++||...+.                +
T Consensus        78 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~----------------~  141 (277)
T PRK05993         78 DALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV----------------P  141 (277)
T ss_pred             cEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC----------------C
Confidence            99999998654321    123356688999998    4455666666666 999999975443                3


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHH---HhCCcEEEEEeccccCCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHR---QHGIEIRIARIFNTYGPR  210 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~---~~~~~~~~lr~~~v~g~~  210 (259)
                      ..+...|+.+|++.+.+++.++.   ..++++++++||.+-.+.
T Consensus       142 ~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~  185 (277)
T PRK05993        142 MKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRF  185 (277)
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCch
Confidence            34456799999999999988764   358999999999887653

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.83  E-value=7.9e-19  Score=139.65  Aligned_cols=196  Identities=17%  Similarity=0.099  Sum_probs=136.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchh-hhcc-CCCceeEeecccCccc------------cCCc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      ++++||||+|+||+++++.|+++|+. |+++.|+........ .... ...++.++.+|+.+.+            ..++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i   81 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYR-VIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV   81 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            58999999999999999999999988 999888643111111 1111 1246889999999876            3569


Q ss_pred             CEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           99 DQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        99 d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      |++||++|....    .....+.+..++.|+.++.++.+++    ++.+. +||++||...+.                +
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~----------------~  145 (245)
T PRK12824         82 DILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLK----------------G  145 (245)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhcc----------------C
Confidence            999999986532    1223456678889999988886544    55555 999999976554                2


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      ......|..+|.+.+.+++.++.+   .++++++++|+.+.++.....    ............+         ...+..
T Consensus       146 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~----~~~~~~~~~~~~~---------~~~~~~  212 (245)
T PRK12824        146 QFGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQM----GPEVLQSIVNQIP---------MKRLGT  212 (245)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhc----CHHHHHHHHhcCC---------CCCCCC
Confidence            223357999999999998888753   479999999999988753221    1222222222222         122446


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      .+|+++++.+++
T Consensus       213 ~~~va~~~~~l~  224 (245)
T PRK12824        213 PEEIAAAVAFLV  224 (245)
T ss_pred             HHHHHHHHHHHc
Confidence            789999987764

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.83  E-value=8.3e-19  Score=140.30  Aligned_cols=200  Identities=14%  Similarity=0.082  Sum_probs=139.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~   95 (259)
                      .+.+++++||||+|+||.+++++|++.|++ |+++++...  .+..+.... ...+..+.+|+++.+            +
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEF   83 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            366899999999999999999999999998 887766432  111111111 235778899999876            4


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC--CeEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||+||.....    ....+++..+++|+.++..+++++.+    .+  .++|++||...+..            
T Consensus        84 ~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~------------  151 (253)
T PRK08993         84 GHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQG------------  151 (253)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccC------------
Confidence            5799999999975421    12345778899999999988887643    23  28999999876642            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                          ......|+.+|.+.+.+.+.++.+   ++++++.++||.+-.+........  ...........+  .       .
T Consensus       152 ----~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~--~~~~~~~~~~~p--~-------~  216 (253)
T PRK08993        152 ----GIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRAD--EQRSAEILDRIP--A-------G  216 (253)
T ss_pred             ----CCCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccc--hHHHHHHHhcCC--C-------C
Confidence                222347999999999999998876   589999999999987642110000  011111221111  1       1


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      -+...+|+++++++++
T Consensus       217 r~~~p~eva~~~~~l~  232 (253)
T PRK08993        217 RWGLPSDLMGPVVFLA  232 (253)
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            2567899999998875

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.83  E-value=1.2e-18  Score=140.07  Aligned_cols=201  Identities=14%  Similarity=0.052  Sum_probs=135.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++++||||+|+||.++++.|+++|+. |++..|+...........+  ...++.++.+|+++.+            .
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~   83 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKAK-VVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF   83 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            67899999999999999999999999998 7777664332222111111  1245778899999877            3


Q ss_pred             CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHH----HHHHhCC--eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLG----LAKRVGA--RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~----~~~~~~~--~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||+||......    ...+++..+++|+.++..+++    .+++.+.  ++|++||...+.             
T Consensus        84 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~-------------  150 (261)
T PRK08936         84 GTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI-------------  150 (261)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC-------------
Confidence            57999999999654321    123456778999887765544    4455543  899999965332             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   +++++.++|+.+..+.......  -...........+         ..
T Consensus       151 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~  216 (261)
T PRK08936        151 ---PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFA--DPKQRADVESMIP---------MG  216 (261)
T ss_pred             ---CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccC--CHHHHHHHHhcCC---------CC
Confidence               33445679999999999998887654   8999999999998875321100  0111222222221         11


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+...+|+++++.+++
T Consensus       217 ~~~~~~~va~~~~~l~  232 (261)
T PRK08936        217 YIGKPEEIAAVAAWLA  232 (261)
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            3557799999988875

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.83  E-value=2.5e-19  Score=141.29  Aligned_cols=197  Identities=15%  Similarity=0.083  Sum_probs=136.1

Q ss_pred             EEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEEEEccCC
Q 025022           36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIYHLACP  107 (259)
Q Consensus        36 lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~vi~~a~~  107 (259)
                      +||||+|+||++++++|+++|+. |+++.|+...............+++++.+|+++.+        .+++|++||++|.
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~   79 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGAR-VTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD   79 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            59999999999999999999998 99998864322221111111246888999999887        4568999999986


Q ss_pred             CCcc----ccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHH
Q 025022          108 ASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV  182 (259)
Q Consensus       108 ~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~  182 (259)
                      ....    ....+.+..+++|+.++..++++....+. +||++||...+.                +..+...|+.+|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~----------------~~~~~~~Y~~sK~a  143 (230)
T PRK07041         80 TPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR----------------PSASGVLQGAINAA  143 (230)
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC----------------CCCcchHHHHHHHH
Confidence            5431    12345678899999999999996655555 999999987665                33445679999999


Q ss_pred             HHHHHHHHHHHh-CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          183 AETLMFDYHRQH-GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       183 ~e~~~~~~~~~~-~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+.+++.++.+. +++++.++|+.+-.+............+........+.         ..+...+|+|+++++++
T Consensus       144 ~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~dva~~~~~l~  211 (230)
T PRK07041        144 LEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPA---------RRVGQPEDVANAILFLA  211 (230)
T ss_pred             HHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHh
Confidence            999999988764 58899999988766432110000011122222222221         11346799999998875

>PRK07069 short chain dehydrogenase; Validated

Probab=99.83  E-value=2.5e-19  Score=143.06  Aligned_cols=199  Identities=16%  Similarity=0.099  Sum_probs=132.9

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC----CCceeEeecccCccc------------cCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++||||+|+||.++++.|+++|++ |+++.|+.....+.+...+.    ...+..+.+|+.+.+            +.+
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   79 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGAK-VFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG   79 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            4899999999999999999999998 98888863222222222111    123445788998876            357


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhh----hHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVI----GTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~----~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ...++.+..+++|+.    .+..++..+++.+. +||++||...+..               
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~---------------  144 (251)
T PRK07069         80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKA---------------  144 (251)
T ss_pred             ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccC---------------
Confidence            89999999976432    122345667888888    56666677776665 9999999876652               


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCccH-HHHHHHHHHcCCCeEEecCCceee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGPRMNIDDGRV-VSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~lr~~~v~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                       ......|+.+|.+.+.+++.++.+.     +++++.++|+.+.+|......... .......+..+.+         ..
T Consensus       145 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~  214 (251)
T PRK07069        145 -EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVP---------LG  214 (251)
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCC---------CC
Confidence             2233569999999999999887653     488999999999887632110000 0011111212111         12


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+.+++|+++++++++
T Consensus       215 ~~~~~~~va~~~~~l~  230 (251)
T PRK07069        215 RLGEPDDVAHAVLYLA  230 (251)
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            3457899999988764

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.4e-18  Score=137.33  Aligned_cols=191  Identities=19%  Similarity=0.123  Sum_probs=133.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----------cCCc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------LIEV   98 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----------~~~~   98 (259)
                      |.+|+++||||+|+||++++++|+++|++ |+++.|+.....          ..+++.+|+.+.+           ..++
T Consensus         1 ~~~k~vlItG~s~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~----------~~~~~~~D~~~~~~~~~~~~~~~~~~~~   69 (234)
T PRK07577          1 MSSRTVLVTGATKGIGLALSLRLANLGHQ-VIGIARSAIDDF----------PGELFACDLADIEQTAATLAQINEIHPV   69 (234)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEeCCccccc----------CceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence            35689999999999999999999999998 999888654311          1257789998876           1268


Q ss_pred             CEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        99 d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      |++||++|......    ...+....+++|+.++..+++++    ++.+. ++|++||...++.                
T Consensus        70 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------  133 (234)
T PRK07577         70 DAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGA----------------  133 (234)
T ss_pred             cEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCC----------------
Confidence            99999999764322    22345667889999988887665    34555 9999999876542                


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                       .....|+.+|.+.+.+++.++.+   +++++++++|+.+..+....... .............+.         ..+..
T Consensus       134 -~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~  202 (234)
T PRK07577        134 -LDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRP-VGSEEEKRVLASIPM---------RRLGT  202 (234)
T ss_pred             -CCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccc-cchhHHHHHhhcCCC---------CCCcC
Confidence             12356999999999999887754   48999999999998765321100 001111112221111         11347


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      .+|+++++++++
T Consensus       203 ~~~~a~~~~~l~  214 (234)
T PRK07577        203 PEEVAAAIAFLL  214 (234)
T ss_pred             HHHHHHHHHHHh
Confidence            799999988765

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.82  E-value=6.3e-19  Score=141.56  Aligned_cols=202  Identities=14%  Similarity=0.068  Sum_probs=133.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---CCCceeEeecccCccc-----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~-----------   94 (259)
                      ++++++++||||+++||+++++.|+++|++ |+++.|+.....+.....+   ...++.++.+|+++.+           
T Consensus         5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (260)
T PRK08416          5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDE   83 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999998 8777654322222111111   1246789999999876           


Q ss_pred             -cCCcCEEEEccCCCCc----------cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCC
Q 025022           95 -LIEVDQIYHLACPASP----------IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHP  158 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~----------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~  158 (259)
                       +.++|++||+||....          +.........+++|+.+...+.+.+    ++.+. +||++||.....      
T Consensus        84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------  157 (260)
T PRK08416         84 DFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLV------  157 (260)
T ss_pred             hcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccccc------
Confidence             4579999999985421          0112334567778888777665554    33344 999999965332      


Q ss_pred             CCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe
Q 025022          159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQ  235 (259)
Q Consensus       159 ~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (259)
                                +......|+.+|.+.+.+++.++.+.   ++++..+.||.+-.+.......  ............+.   
T Consensus       158 ----------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~--~~~~~~~~~~~~~~---  222 (260)
T PRK08416        158 ----------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTN--YEEVKAKTEELSPL---  222 (260)
T ss_pred             ----------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccC--CHHHHHHHHhcCCC---
Confidence                      22233579999999999999998764   7999999998886653111000  01111122222211   


Q ss_pred             cCCceeeeeeeHHHHHHHHHhhh
Q 025022          236 APGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       236 ~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                            ..+..++|+++++++++
T Consensus       223 ------~r~~~p~~va~~~~~l~  239 (260)
T PRK08416        223 ------NRMGQPEDLAGACLFLC  239 (260)
T ss_pred             ------CCCCCHHHHHHHHHHHc
Confidence                  12567899999998875

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.82  E-value=2.6e-19  Score=146.03  Aligned_cols=169  Identities=15%  Similarity=0.076  Sum_probs=123.9

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc----------
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL----------   94 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~----------   94 (259)
                      +...+.+++++||||+|+||.++++.|+++|++ |++++|+.....+..+.... ...+.++.+|+.+.+          
T Consensus        34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~-Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~  112 (293)
T PRK05866         34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGAT-VVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVE  112 (293)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            344467799999999999999999999999998 99998864332221111111 235778899999877          


Q ss_pred             --cCCcCEEEEccCCCCcccc------ccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPIFY------KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                        ..++|++||+||.......      ..+.+..+++|+.++..+++++.    +.+. ++|++||...+..        
T Consensus       113 ~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~--------  184 (293)
T PRK05866        113 KRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE--------  184 (293)
T ss_pred             HHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC--------
Confidence              3579999999997643211      12345688999999888877653    4555 9999999765431        


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                             +......|+.+|++.+.+++.++.+.   ++++++++||.+-.+.
T Consensus       185 -------~~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~  229 (293)
T PRK05866        185 -------ASPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPM  229 (293)
T ss_pred             -------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCcc
Confidence                   12234679999999999999887654   7999999999876653

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.82  E-value=1.3e-18  Score=137.68  Aligned_cols=191  Identities=15%  Similarity=0.094  Sum_probs=133.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVD   99 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d   99 (259)
                      +|+++||||+|+||+++++.|+++|++ |+++.|+.....+.++.    .++.++.+|+.+.+            +.++|
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   76 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQP-VIVSYRTHYPAIDGLRQ----AGAQCIQADFSTNAGIMAFIDELKQHTDGLR   76 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCchhHHHHHHH----cCCEEEEcCCCCHHHHHHHHHHHHhhCCCcc
Confidence            578999999999999999999999998 88888865433222222    24678899999876            35699


Q ss_pred             EEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC--C-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022          100 QIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG--A-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus       100 ~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      ++||+||.....    ...++.+..+++|+.++..+.+.+.+    .+  . ++|++||.....                
T Consensus        77 ~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~----------------  140 (236)
T PRK06483         77 AIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK----------------  140 (236)
T ss_pred             EEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc----------------
Confidence            999999864321    12345678889999998877766643    33  3 899999865322                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      +......|+.+|.+.+.+++.++.+.  ++++..++|+.+..+...   .   ...........++..         +..
T Consensus       141 ~~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~---~---~~~~~~~~~~~~~~~---------~~~  205 (236)
T PRK06483        141 GSDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGD---D---AAYRQKALAKSLLKI---------EPG  205 (236)
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCC---C---HHHHHHHhccCcccc---------CCC
Confidence            22334579999999999999998875  589999999987432211   0   111122222222211         336


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      .+|+++++.+++
T Consensus       206 ~~~va~~~~~l~  217 (236)
T PRK06483        206 EEEIIDLVDYLL  217 (236)
T ss_pred             HHHHHHHHHHHh
Confidence            799999998875

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.82  E-value=5.6e-19  Score=141.18  Aligned_cols=198  Identities=12%  Similarity=0.086  Sum_probs=138.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||+++++.|+++|+. |++++|+........+.... ..++.++.+|+.+.+            ..
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAK-LALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFG   81 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56789999999999999999999999998 88888865332222221111 246788999998865            25


Q ss_pred             CcCEEEEccCCCCcc-------------ccccChhHHHHHhhhhHHHHHHHHH----Hh-CC-eEEEEecceeecCCCCC
Q 025022           97 EVDQIYHLACPASPI-------------FYKYNPVKTIKTNVIGTLNMLGLAK----RV-GA-RILLTSTSEVYGDPLVH  157 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~-------------~~~~~~~~~~~~n~~~~~~l~~~~~----~~-~~-~~i~~Ss~~~~~~~~~~  157 (259)
                      ++|+|||++|.....             ....+....+++|+.++..+++.+.    +. .. +++++||...++.    
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~----  157 (253)
T PRK08217         82 QLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN----  157 (253)
T ss_pred             CCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC----
Confidence            689999999854321             1123455677899999887766543    22 22 7999998765542    


Q ss_pred             CCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEE
Q 025022          158 PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTV  234 (259)
Q Consensus       158 ~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (259)
                                   .+...|+.+|.+.+.+++.++++   .+++++.++|+.+.++....    ..+..........+.  
T Consensus       158 -------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~----~~~~~~~~~~~~~~~--  218 (253)
T PRK08217        158 -------------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAA----MKPEALERLEKMIPV--  218 (253)
T ss_pred             -------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccc----cCHHHHHHHHhcCCc--
Confidence                         23357999999999999998765   58999999999998875321    223333333322221  


Q ss_pred             ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          235 QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       235 ~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                             ..+.+++|+++++.+++
T Consensus       219 -------~~~~~~~~~a~~~~~l~  235 (253)
T PRK08217        219 -------GRLGEPEEIAHTVRFII  235 (253)
T ss_pred             -------CCCcCHHHHHHHHHHHH
Confidence                   23568899999998875

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.82  E-value=8.1e-19  Score=140.31  Aligned_cols=200  Identities=13%  Similarity=0.057  Sum_probs=136.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      +|+++||||+|+||+++++.|+++|+. |+++.|+............ ...++.++++|+++++            +.++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGAN-VVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            478999999999999999999999998 9998886433222111111 1246888999999876            3578


Q ss_pred             CEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           99 DQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        99 d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      |++||++|....    ....++++..+++|+.++.++++++.+    .+ . +||++||...+.                
T Consensus        80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~----------------  143 (252)
T PRK07677         80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD----------------  143 (252)
T ss_pred             cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc----------------
Confidence            999999985432    122334577899999999999988843    22 3 899999875432                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      +......|+.+|.+.+.+.+.++.+    +|+++..++||.+.++...... ..-....+.+.+..++         ..+
T Consensus       144 ~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~  213 (252)
T PRK07677        144 AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKL-WESEEAAKRTIQSVPL---------GRL  213 (252)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccc-cCCHHHHHHHhccCCC---------CCC
Confidence            2223356999999999999987765    3799999999998854311000 0011222233322221         125


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ...+|+++++.+++
T Consensus       214 ~~~~~va~~~~~l~  227 (252)
T PRK07677        214 GTPEEIAGLAYFLL  227 (252)
T ss_pred             CCHHHHHHHHHHHc
Confidence            57799999887764

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.82  E-value=3.3e-19  Score=142.88  Aligned_cols=159  Identities=19%  Similarity=0.153  Sum_probs=115.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------cCCcCEEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------LIEVDQIYH  103 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------~~~~d~vi~  103 (259)
                      +++++||||+|+||+++++.|+++|++ |+++.|+..... .+....  ...++.++.+|+++.+      ..++|+|||
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~   79 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHN-VIAGVQIAPQVT-ALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN   79 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence            468999999999999999999999998 888888543221 111111  1235788899999876      238999999


Q ss_pred             ccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC
Q 025022          104 LACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS  174 (259)
Q Consensus       104 ~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (259)
                      +||.....    ...++.+..+++|+.++..+.+.+    .+.+. +||++||...+.                ......
T Consensus        80 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~----------------~~~~~~  143 (257)
T PRK09291         80 NAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLI----------------TGPFTG  143 (257)
T ss_pred             CCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhcc----------------CCCCcc
Confidence            99965421    112335567888998877766544    44555 999999975332                112345


Q ss_pred             chHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccC
Q 025022          175 CYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYG  208 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g  208 (259)
                      .|+.+|.+.|.+.+.++.+   .+++++++||+.+..
T Consensus       144 ~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t  180 (257)
T PRK09291        144 AYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLT  180 (257)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccc
Confidence            7999999999998887654   589999999987754

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.82  E-value=8e-19  Score=140.38  Aligned_cols=202  Identities=17%  Similarity=0.080  Sum_probs=139.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +.+++++||||+|+||.+++++|+++|++ |+++.|+.+......+... ...++.++.+|+++.+            +.
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   83 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAK-VVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYG   83 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999998 9999886543222222111 1246888999999876            35


Q ss_pred             CcCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|++||++|.....     ...++++..+++|+.++..+++++    .+.+. ++|++||...+.              
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~--------------  149 (253)
T PRK06172         84 RLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLG--------------  149 (253)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcc--------------
Confidence            789999999964321     123456678889999988776654    33444 899999987665              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+++.++.+.   ++++..+.||.+-.+........ ............+         ...
T Consensus       150 --~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~-~~~~~~~~~~~~~---------~~~  217 (253)
T PRK06172        150 --AAPKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEA-DPRKAEFAAAMHP---------VGR  217 (253)
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhccc-ChHHHHHHhccCC---------CCC
Confidence              33345679999999999999998764   69999999998876642211000 0111112211111         112


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+++.+++++
T Consensus       218 ~~~p~~ia~~~~~l~  232 (253)
T PRK06172        218 IGKVEEVASAVLYLC  232 (253)
T ss_pred             ccCHHHHHHHHHHHh
Confidence            457899999988875

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.82  E-value=4.5e-19  Score=146.61  Aligned_cols=196  Identities=13%  Similarity=0.043  Sum_probs=136.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +.+++++||||+|+||+++++.|+++|++ |+++.|+.....+..++... ...+.++.+|+++.+            +.
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGAR-LVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG   83 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            45789999999999999999999999998 88888865433222222111 235778899999877            36


Q ss_pred             CcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||......    ..++.+..+++|+.++..+++++    ++.+. ++|++||...+.               
T Consensus        84 ~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~---------------  148 (330)
T PRK06139         84 RIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFA---------------  148 (330)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcC---------------
Confidence            7999999999654322    12345678999999998887765    34444 999999976553               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                       +......|+.+|.+.+.+.+.++.+    .+++++.+.|+.+.+|.......          ..+...      .....
T Consensus       149 -~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~----------~~~~~~------~~~~~  211 (330)
T PRK06139        149 -AQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN----------YTGRRL------TPPPP  211 (330)
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc----------cccccc------cCCCC
Confidence             2223467999999988888888765    27999999999998875321100          000000      01123


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +++.+|+|++++.++
T Consensus       212 ~~~pe~vA~~il~~~  226 (330)
T PRK06139        212 VYDPRRVAKAVVRLA  226 (330)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            567888888887764

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.82  E-value=6e-19  Score=145.26  Aligned_cols=177  Identities=15%  Similarity=0.063  Sum_probs=129.0

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~----------   94 (259)
                      .++++++++||||+++||.+++++|+++|++ |+++.|+.....+..++.   .....+.++.+|+.+.+          
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~-Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~   88 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAE-VILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR   88 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence            4477899999999999999999999999998 888888654332222221   12246888999999977          


Q ss_pred             --cCCcCEEEEccCCCCcc---ccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecC-CCCCCCCCCCc
Q 025022           95 --LIEVDQIYHLACPASPI---FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGD-PLVHPQDESYW  164 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~-~~~~~~~e~~~  164 (259)
                        ..++|++||+||.....   ...+..+..+.+|+.++..+++.+..    ...++|++||...+.. .......+.  
T Consensus        89 ~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~--  166 (313)
T PRK05854         89 AEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWE--  166 (313)
T ss_pred             HhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCccccccc--
Confidence              35799999999976431   23456788899999998888877652    2239999999854322 111111111  


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~lr~~~v~g~~  210 (259)
                         .+..+...|+.||.+.+.+.+.++++     .++++..+.||.+..+.
T Consensus       167 ---~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~  214 (313)
T PRK05854        167 ---RSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNL  214 (313)
T ss_pred             ---ccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCc
Confidence               13455678999999999999988763     36999999999987653

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.82  E-value=4e-19  Score=146.02  Aligned_cols=179  Identities=15%  Similarity=0.073  Sum_probs=123.3

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~----------   94 (259)
                      .++++++|+||||+|+||++++++|+++|++ |+++.|+.....+..+..   .....+.++.+|+.+.+          
T Consensus        12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~-vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~   90 (306)
T PRK06197         12 PDQSGRVAVVTGANTGLGYETAAALAAKGAH-VVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR   90 (306)
T ss_pred             ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999999999998 888888644322222111   12246788999999877          


Q ss_pred             --cCCcCEEEEccCCCCcc--ccccChhHHHHHhhhhHH----HHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 --LIEVDQIYHLACPASPI--FYKYNPVKTIKTNVIGTL----NMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~--~~~~~~~~~~~~n~~~~~----~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                        ..++|++||+||.....  ....+.+..+++|+.++.    .++..+++.+. +||++||...+.... .+.++..+ 
T Consensus        91 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~-~~~~~~~~-  168 (306)
T PRK06197         91 AAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAA-IHFDDLQW-  168 (306)
T ss_pred             hhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCC-CCccccCc-
Confidence              35799999999965432  223456778899999954    45555555555 999999986432111 11111111 


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEE--EeccccCCC
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIA--RIFNTYGPR  210 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~l--r~~~v~g~~  210 (259)
                       ..+..+...|+.+|.+.+.+.+.++.+.   +++++++  .||.+..+.
T Consensus       169 -~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~  217 (306)
T PRK06197        169 -ERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL  217 (306)
T ss_pred             -ccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence             1134456789999999999999987764   5655554  688887654

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.82  E-value=1e-18  Score=139.17  Aligned_cols=199  Identities=14%  Similarity=0.053  Sum_probs=136.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      +.+++++|+||+|+||.++++.|+++|++ |+++ .|+............ ...++.++.+|+++.+            .
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF   81 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999998 8777 775433222222111 1245888999999877            2


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|+|||++|.....    ...+..+..+++|+.++.++++.+..    .+. ++|++||...+..             
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~-------------  148 (247)
T PRK05565         82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIG-------------  148 (247)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccC-------------
Confidence            4799999999976321    12234567889999998888877754    334 8999999765431             


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                         ......|+.+|.+.+.+++.++.+   .+++++.++|+.+..+.....    ............         ....
T Consensus       149 ---~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~----~~~~~~~~~~~~---------~~~~  212 (247)
T PRK05565        149 ---ASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSF----SEEDKEGLAEEI---------PLGR  212 (247)
T ss_pred             ---CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCcccccc----ChHHHHHHHhcC---------CCCC
Confidence               122346999999999988888765   389999999999876543211    111111111110         1123


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+++++++++
T Consensus       213 ~~~~~~va~~~~~l~  227 (247)
T PRK05565        213 LGKPEEIAKVVLFLA  227 (247)
T ss_pred             CCCHHHHHHHHHHHc
Confidence            568899999888775

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.82  E-value=1.3e-18  Score=138.77  Aligned_cols=199  Identities=15%  Similarity=0.058  Sum_probs=130.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc-CCCCCCcchhhhcc-CCCceeEeecccCccc------------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++||||+|+||+++++.|+++|+. |+++. |+............ ...++.++.+|+++.+            +.+
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWS-VGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGR   80 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999998 76654 43222111111111 1236888999999876            357


Q ss_pred             cCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHHH----hC----CeEEEEecceeecCCCCCCCCCCCc
Q 025022           98 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG----ARILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        98 ~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~----~~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +|++||+||.....     ....+.+..+++|+.++..+++.+.+    .+    .+||++||...+..           
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~-----------  149 (248)
T PRK06947         81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLG-----------  149 (248)
T ss_pred             CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCC-----------
Confidence            99999999965321     12234567789999999888754432    11    26999999754321           


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          .......|+.+|.+.+.+++.++++.   ++++++++||.+..|......  . +..........+  .       
T Consensus       150 ----~~~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~--~-~~~~~~~~~~~~--~-------  213 (248)
T PRK06947        150 ----SPNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGG--Q-PGRAARLGAQTP--L-------  213 (248)
T ss_pred             ----CCCCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccC--C-HHHHHHHhhcCC--C-------
Confidence                11122469999999999999888764   799999999999887532111  0 111111111111  1       


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      .-+..++|+++++++++
T Consensus       214 ~~~~~~e~va~~~~~l~  230 (248)
T PRK06947        214 GRAGEADEVAETIVWLL  230 (248)
T ss_pred             CCCcCHHHHHHHHHHHc
Confidence            11357799999988764

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.7e-18  Score=139.28  Aligned_cols=200  Identities=18%  Similarity=0.147  Sum_probs=139.4

Q ss_pred             cCCCEEEEEcCch-hhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc-----------
Q 025022           30 QSNMRILVTGGAG-FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        30 ~~~~~vlItGatG-~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~-----------   94 (259)
                      +++++++||||+| .||.++++.|+++|+. |++.+|+.....+..+..   ....++.++.+|+.+.+           
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            5578999999997 7999999999999998 888887644322222211   12236788999999876           


Q ss_pred             -cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                       ++++|++||+||.....    ....++...+++|+.++..+++++.+    .+ . ++|++||...+.           
T Consensus        94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~-----------  162 (262)
T PRK07831         94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR-----------  162 (262)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC-----------
Confidence             35799999999964321    11234667788999999888877643    33 3 889888865332           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                           +..+...|+.+|.+.+.+++.++.+   ++++++.++|+.+..|......   ............++        
T Consensus       163 -----~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~---~~~~~~~~~~~~~~--------  226 (262)
T PRK07831        163 -----AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT---SAELLDELAAREAF--------  226 (262)
T ss_pred             -----CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc---CHHHHHHHHhcCCC--------
Confidence                 2234467999999999999999876   5799999999999887532110   12222223222221        


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                       ..+...+|+++++++++
T Consensus       227 -~r~~~p~~va~~~~~l~  243 (262)
T PRK07831        227 -GRAAEPWEVANVIAFLA  243 (262)
T ss_pred             -CCCcCHHHHHHHHHHHc
Confidence             12557799999998875

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.8e-18  Score=138.35  Aligned_cols=162  Identities=15%  Similarity=0.115  Sum_probs=116.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCCC-Ccchhhhcc--CCCceeEeecccCccc-----------c
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTG-SKDNLRKWI--GHPRFELIRHDVTEPL-----------L   95 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~-~~~~~~~~~--~~~~~~~~~~dl~~~~-----------~   95 (259)
                      ++++|+||||+|+||++++++|+++| ++ |+++.|+.+. ..+..++..  ...++.++.+|+++.+           .
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~-V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   85 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPAR-VVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG   85 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCe-EEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence            46899999999999999999999996 77 8888887654 222222221  1236889999998866           2


Q ss_pred             CCcCEEEEccCCCCcc-ccccC---hhHHHHHhhhhHHHH----HHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI-FYKYN---PVKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~-~~~~~---~~~~~~~n~~~~~~l----~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||++|..... ....+   ..+.+++|+.++..+    +..+++.+. +||++||...+.              
T Consensus        86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~--------------  151 (253)
T PRK07904         86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGER--------------  151 (253)
T ss_pred             CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcC--------------
Confidence            4799999999875321 11112   124689999988764    556666666 999999975332              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHH---HhCCcEEEEEeccccCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHR---QHGIEIRIARIFNTYGP  209 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~~~~~~~lr~~~v~g~  209 (259)
                        +..+...|+.||++.+.+.+.++.   .+++++++++||.+..+
T Consensus       152 --~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~  195 (253)
T PRK07904        152 --VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTR  195 (253)
T ss_pred             --CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecc
Confidence              122335699999999988777654   35899999999999875

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.82  E-value=2.1e-18  Score=137.90  Aligned_cols=199  Identities=16%  Similarity=0.067  Sum_probs=139.0

Q ss_pred             cCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++|+++||||+  +.||++++++|+++|++ |++..|+. ...+.+++. ....+..+++|+++.+            +
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r~~-~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQND-RMKKSLQKL-VDEEDLLVECDVASDESIERAFATIKERV   81 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecCch-HHHHHHHhh-ccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence            567899999999  79999999999999998 88888752 222222222 2246788999999877            4


Q ss_pred             CCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCc
Q 025022           96 IEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      .++|++||+||....        +...++++..+++|+.++..+++++.+.   +.++|++||.....            
T Consensus        82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------------  149 (252)
T PRK06079         82 GKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER------------  149 (252)
T ss_pred             CCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc------------
Confidence            679999999996532        1122346778899999999988887653   22899999865322            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          +......|+.+|.+.+.+.+.++.+   +|+++..+.||.+-.+.......  ............+.         
T Consensus       150 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~---------  214 (252)
T PRK06079        150 ----AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKG--HKDLLKESDSRTVD---------  214 (252)
T ss_pred             ----cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCC--hHHHHHHHHhcCcc---------
Confidence                2233467999999999999998875   47999999999997763211100  11222222221111         


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+..++|+++++.+++
T Consensus       215 ~r~~~pedva~~~~~l~  231 (252)
T PRK06079        215 GVGVTIEEVGNTAAFLL  231 (252)
T ss_pred             cCCCCHHHHHHHHHHHh
Confidence            12567899999998876

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.1e-18  Score=139.10  Aligned_cols=163  Identities=15%  Similarity=0.132  Sum_probs=120.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh---ccCCCceeEeecccCccc------------cC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK---WIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++||||+|+||++++++|+++|++ |+++.|+.....+....   .....++.++.+|+++.+            +.
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRD-LALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999988 88888865432222111   111346888999999886            45


Q ss_pred             CcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||......    .....+..+++|+.++..+++++.    +.+. +||++||......              
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~--------------  146 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRG--------------  146 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccC--------------
Confidence            7999999998654321    123345678899999988888764    3455 9999999754321              


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                       .+.+...|+.+|.+.+.+.+.++.+   .+++++.++|+++.++.
T Consensus       147 -~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~  191 (248)
T PRK08251        147 -LPGVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEM  191 (248)
T ss_pred             -CCCCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchh
Confidence             1123467999999999999888765   36899999999998754

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.82  E-value=7e-19  Score=141.56  Aligned_cols=162  Identities=19%  Similarity=0.132  Sum_probs=121.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||++++++|+++|++ |+++.|+...... +.... ..++.++.+|+++.+            +.+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   80 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGAR-VAVLERSAEKLAS-LRQRF-GDHVLVVEGDVTSYADNQRAVDQTVDAFGK   80 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH-HHHHh-CCcceEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            56789999999999999999999999998 9988886433222 22211 235788999999876            357


Q ss_pred             cCEEEEccCCCCcc--c---ccc----ChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCc
Q 025022           98 VDQIYHLACPASPI--F---YKY----NPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        98 ~d~vi~~a~~~~~~--~---~~~----~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +|++||+||.....  .   ..+    .++..+++|+.++..+++++.+    .+.++|++||...+.            
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------  148 (263)
T PRK06200         81 LDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY------------  148 (263)
T ss_pred             CCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC------------
Confidence            99999999964321  1   111    1456788999998888887753    223899999987554            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPR  210 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~  210 (259)
                          +......|+.+|.+.+.+++.++.+.  ++++..+.||.+..+.
T Consensus       149 ----~~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~  192 (263)
T PRK06200        149 ----PGGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDL  192 (263)
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCC
Confidence                22334569999999999999988764  4899999999987654

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.82  E-value=1.3e-18  Score=140.19  Aligned_cols=154  Identities=21%  Similarity=0.202  Sum_probs=120.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++++++||||+|+||.++++.|+++|++ |++++++.....        ..++.++.+|+++.+            ..
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~-v~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   76 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGAN-VVNADIHGGDGQ--------HENYQFVPTDVSSAEEVNHTVAEIIEKFG   76 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCccccc--------cCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            366899999999999999999999999998 888887543321        136788999999877            35


Q ss_pred             CcCEEEEccCCCCcc-------------ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCC
Q 025022           97 EVDQIYHLACPASPI-------------FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHP  158 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~-------------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~  158 (259)
                      ++|++||+||.....             ...++++..+++|+.++..+++++.+    .+. +||++||...+.      
T Consensus        77 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------  150 (266)
T PRK06171         77 RIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE------  150 (266)
T ss_pred             CCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC------
Confidence            799999999964321             12234567889999999999888764    233 899999986543      


Q ss_pred             CCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEecccc
Q 025022          159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTY  207 (259)
Q Consensus       159 ~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~  207 (259)
                                +......|+.+|.+.+.+++.++.+   +++++++++||.+.
T Consensus       151 ----------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~  192 (266)
T PRK06171        151 ----------GSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE  192 (266)
T ss_pred             ----------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence                      2223467999999999999998865   47999999999875

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.82  E-value=2.4e-18  Score=137.94  Aligned_cols=164  Identities=18%  Similarity=0.134  Sum_probs=121.7

Q ss_pred             cCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCCC----------CcchhhhccC--CCceeEeecccCccc-
Q 025022           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTG----------SKDNLRKWIG--HPRFELIRHDVTEPL-   94 (259)
Q Consensus        30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~----------~~~~~~~~~~--~~~~~~~~~dl~~~~-   94 (259)
                      +++++++||||+|  .||.+++++|+++|+. |+++.|+...          ....+.....  ..++.++.+|+++.+ 
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~~-vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   81 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGID-IFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYA   81 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCc-EEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence            4678999999995  7999999999999998 8888876211          1101111111  235889999999876 


Q ss_pred             -----------cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCC
Q 025022           95 -----------LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDP  154 (259)
Q Consensus        95 -----------~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~  154 (259)
                                 +.++|+|||+||......    ...+.+..+++|+.++..+++++...    +. ++|++||...+.  
T Consensus        82 ~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~--  159 (256)
T PRK12748         82 PNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG--  159 (256)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC--
Confidence                       357999999998653321    22345677899999999999887542    33 999999986654  


Q ss_pred             CCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          155 LVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       155 ~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                                    +......|+.+|.+.+.+++.++.+   .+++++.++|+.+..+.
T Consensus       160 --------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~  204 (256)
T PRK12748        160 --------------PMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGW  204 (256)
T ss_pred             --------------CCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCC
Confidence                          3334467999999999999988765   47999999999877653

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.81  E-value=5.5e-19  Score=142.21  Aligned_cols=162  Identities=17%  Similarity=0.164  Sum_probs=120.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||.+++++|+++|+. |+++.|+.+........... ..++.++.+|+++.+            +.
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~   85 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG   85 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            56789999999999999999999999998 99998864432221111111 235678899999876            35


Q ss_pred             CcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           97 EVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        97 ~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      ++|++||+||....    ....++++..+++|+.++.++++++.+    .+.+||++||...+.                
T Consensus        86 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~----------------  149 (264)
T PRK07576         86 PIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV----------------  149 (264)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc----------------
Confidence            78999999985432    112334567888999999999888754    223999999975432                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYG  208 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g  208 (259)
                      +......|+.+|.+.+.+++.++.+   .+++++.++|+.+.+
T Consensus       150 ~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~  192 (264)
T PRK07576        150 PMPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAG  192 (264)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccC
Confidence            2233467999999999999988765   478999999998875

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.81  E-value=2e-18  Score=138.54  Aligned_cols=161  Identities=14%  Similarity=0.086  Sum_probs=115.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcCE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQ  100 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d~  100 (259)
                      |+++||||+|.||++++++|+++|++ |+++.|+.....+...+.....++.++.+|+++.+            +.++|+
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~   79 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGAR-VVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDA   79 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            68999999999999999999999998 99988865432222222212236788999999876            467999


Q ss_pred             EEEccCCCCcc---c---cccChhHHHHHhhhhHHHHHHHH----H-HhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022          101 IYHLACPASPI---F---YKYNPVKTIKTNVIGTLNMLGLA----K-RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus       101 vi~~a~~~~~~---~---~~~~~~~~~~~n~~~~~~l~~~~----~-~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +||+||.....   .   ...+....+.+|+.++..+.+.+    . +.+. +||++||.....                
T Consensus        80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~----------------  143 (259)
T PRK08340         80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKE----------------  143 (259)
T ss_pred             EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCC----------------
Confidence            99999964311   1   12234445677777765554433    2 2333 999999986543                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                      +..+...|+.+|.+.+.+.+.++.+.   ++++..+.||.+-.+.
T Consensus       144 ~~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~  188 (259)
T PRK08340        144 PMPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPG  188 (259)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCcc
Confidence            33344679999999999999998865   6899999998887664

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.81  E-value=4e-19  Score=144.61  Aligned_cols=168  Identities=17%  Similarity=0.194  Sum_probs=116.9

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----c------CC-cCEE
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L------IE-VDQI  101 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~------~~-~d~v  101 (259)
                      +|+||||||++|++++++|+++|++ |.++.|+.....        ..+++.+.+|+.|.+     +      .+ +|.+
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~-V~~~~R~~~~~~--------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v   71 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVP-FLVASRSSSSSA--------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAV   71 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCc-EEEEeCCCcccc--------CCCCccccccCCCHHHHHHHHhcccCcCCceeEE
Confidence            5899999999999999999999999 999999755321        135667788888877     3      56 9999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      +|+++...      +       ......+++++|++.|+ +||++||..++..               .        ..+
T Consensus        72 ~~~~~~~~------~-------~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~---------------~--------~~~  115 (285)
T TIGR03649        72 YLVAPPIP------D-------LAPPMIKFIDFARSKGVRRFVLLSASIIEKG---------------G--------PAM  115 (285)
T ss_pred             EEeCCCCC------C-------hhHHHHHHHHHHHHcCCCEEEEeeccccCCC---------------C--------chH
Confidence            99886421      0       12344688999999999 9999998654321               0        012


Q ss_pred             HHHHHHHHHHHHH-hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          181 RVAETLMFDYHRQ-HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       181 ~~~e~~~~~~~~~-~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ...|..+    ++ .+++++++||++++++....       .+...+.....+. .+.++..++|++++|+|+++..++
T Consensus       116 ~~~~~~l----~~~~gi~~tilRp~~f~~~~~~~-------~~~~~~~~~~~~~-~~~g~~~~~~v~~~Dva~~~~~~l  182 (285)
T TIGR03649       116 GQVHAHL----DSLGGVEYTVLRPTWFMENFSEE-------FHVEAIRKENKIY-SATGDGKIPFVSADDIARVAYRAL  182 (285)
T ss_pred             HHHHHHH----HhccCCCEEEEeccHHhhhhccc-------ccccccccCCeEE-ecCCCCccCcccHHHHHHHHHHHh
Confidence            2234333    33 48999999999988643111       1112222333333 355678899999999999988765

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.81  E-value=1.4e-18  Score=139.46  Aligned_cols=205  Identities=12%  Similarity=0.060  Sum_probs=140.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||.++++.|+++|++.|+++.|+............ ...++.++.+|+++.+            +
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF   82 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            36779999999999999999999999998767777775433222111111 1235778899999876            2


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||++|.....    ...+..+..+++|+.++.++++++.+    .+ . ++|++||...++.            
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~------------  150 (260)
T PRK06198         83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGG------------  150 (260)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC------------
Confidence            5799999999965421    12234566789999999999877743    22 2 7999999876652            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC---ccHHHHHHHHHHcCCCeEEecCCc
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDD---GRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                          ......|+.+|.+.|.+.+.++.+.   +++++.++|+++.++......   ......+........+        
T Consensus       151 ----~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--------  218 (260)
T PRK06198        151 ----QPFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQP--------  218 (260)
T ss_pred             ----CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccCC--------
Confidence                2233579999999999999887754   589999999999887531100   0011112222221111        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+++.+|+++++.+++
T Consensus       219 -~~~~~~~~~~a~~~~~l~  236 (260)
T PRK06198        219 -FGRLLDPDEVARAVAFLL  236 (260)
T ss_pred             -ccCCcCHHHHHHHHHHHc
Confidence             234678999999998875

>PRK08017 oxidoreductase; Provisional

Probab=99.81  E-value=1e-18  Score=140.00  Aligned_cols=193  Identities=18%  Similarity=0.103  Sum_probs=130.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------------cCCcC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------------LIEVD   99 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------------~~~~d   99 (259)
                      ++++||||+|+||.++++.|+++|++ |+++.|+..... .+..    .+++.+.+|+.+.+             ..++|
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~-v~~~~r~~~~~~-~~~~----~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~   76 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYR-VLAACRKPDDVA-RMNS----LGFTGILLDLDDPESVERAADEVIALTDNRLY   76 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHhH-HHHh----CCCeEEEeecCCHHHHHHHHHHHHHhcCCCCe
Confidence            58999999999999999999999998 888888643322 1111    25778899998865             14689


Q ss_pred             EEEEccCCCCccc----cccChhHHHHHhhhhHHHH----HHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       100 ~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l----~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      .+||++|......    ...+.+..+++|+.++.++    ++.+++.+. ++|++||...+.                +.
T Consensus        77 ~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~----------------~~  140 (256)
T PRK08017         77 GLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLI----------------ST  140 (256)
T ss_pred             EEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCccccc----------------CC
Confidence            9999998654211    2234567889999988776    455556666 899999974432                22


Q ss_pred             CCCCchHHHHHHHHHHHHHHHH---HhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHR---QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~---~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      .....|+.+|...|.+.+.++.   ..++++++++|+.+..+...        .... .....  +....+...+.++++
T Consensus       141 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~--------~~~~-~~~~~--~~~~~~~~~~~~~~~  209 (256)
T PRK08017        141 PGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTD--------NVNQ-TQSDK--PVENPGIAARFTLGP  209 (256)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhh--------cccc-hhhcc--chhhhHHHhhcCCCH
Confidence            3346799999999998876543   45899999999776553211        0000 00011  111122233457899


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|+++++..++
T Consensus       210 ~d~a~~~~~~~  220 (256)
T PRK08017        210 EAVVPKLRHAL  220 (256)
T ss_pred             HHHHHHHHHHH
Confidence            99999987764

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.81  E-value=2.3e-18  Score=138.74  Aligned_cols=165  Identities=14%  Similarity=0.059  Sum_probs=122.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc-----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~-----------   94 (259)
                      ++++++++||||+|+||.++++.|+++|++ |+++.|+........+..   ....++..+.+|+++.+           
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA   83 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999998 999988654332222221   11236778899999987           


Q ss_pred             -cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 -LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       +.++|++||+||......    ...++...+++|+.+...+++.+    ++.+. +||++||...+.            
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------  151 (265)
T PRK07062         84 RFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQ------------  151 (265)
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccC------------
Confidence             467999999999653211    22345677888888877776655    33444 999999986543            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                          +......|+.+|.+.+.+.+.++.+   .|++++.++||.+..+.
T Consensus       152 ----~~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~  196 (265)
T PRK07062        152 ----PEPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQ  196 (265)
T ss_pred             ----CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccch
Confidence                2223357999999999999888765   47999999999887764

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.80  E-value=4.4e-18  Score=137.33  Aligned_cols=200  Identities=12%  Similarity=0.034  Sum_probs=135.5

Q ss_pred             cCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------   94 (259)
                      |++++++||||++  .||++++++|+++|++ |++..|+... .+..+.... ......+++|+++.+            
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~-V~~~~r~~~~-~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQGEAL-GKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKK   82 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCE-EEEecCchHH-HHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            5678999999997  9999999999999998 8888775321 112222211 112346889999987            


Q ss_pred             cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                      +.++|++|||||....        +...++++..+++|+.++..+++++...   +.+||++||.....           
T Consensus        83 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~-----------  151 (271)
T PRK06505         83 WGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR-----------  151 (271)
T ss_pred             hCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc-----------
Confidence            4689999999996531        1223456778899999999888776532   23899999875332           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                           +......|+.+|.+.+.+.+.++.+   +|++++.+.||.+-.+.......  ............++        
T Consensus       152 -----~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~--~~~~~~~~~~~~p~--------  216 (271)
T PRK06505        152 -----VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGD--ARAIFSYQQRNSPL--------  216 (271)
T ss_pred             -----cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcc--hHHHHHHHhhcCCc--------
Confidence                 2223457999999999999999876   47999999999987754211000  01111111111111        


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                       ..+...+|+|+++++++
T Consensus       217 -~r~~~peeva~~~~fL~  233 (271)
T PRK06505        217 -RRTVTIDEVGGSALYLL  233 (271)
T ss_pred             -cccCCHHHHHHHHHHHh
Confidence             12457899999998875

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.80  E-value=3e-18  Score=135.81  Aligned_cols=193  Identities=18%  Similarity=0.139  Sum_probs=133.6

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------cCCcCE
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------LIEVDQ  100 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------~~~~d~  100 (259)
                      ++|||++|+||+++++.|+++|++ |+++.|+.............  ...+.++.+|+++..            ..++|+
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   79 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAK-VIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI   79 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            589999999999999999999998 88888764222211211111  135788999998877            246899


Q ss_pred             EEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEeccee-ecCCCCCCCCCCCcCCCCCC
Q 025022          101 IYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEV-YGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       101 vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~-~~~~~~~~~~e~~~~~~~~~  170 (259)
                      |||++|.....    .....++..+++|+.++..+++.+.+    .+. +|+++||... ++.                 
T Consensus        80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~-----------------  142 (239)
T TIGR01830        80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN-----------------  142 (239)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC-----------------
Confidence            99999975321    12345677889999999999998865    344 9999999743 432                 


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      .....|+.+|.+.+.+++.++++   .++++++++|+.+.++....    ....+........+.         ..+.++
T Consensus       143 ~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~----~~~~~~~~~~~~~~~---------~~~~~~  209 (239)
T TIGR01830       143 AGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK----LSEKVKKKILSQIPL---------GRFGTP  209 (239)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh----cChHHHHHHHhcCCc---------CCCcCH
Confidence            12356999999999998887765   48999999999886653211    111222222222221         125578


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|++++++.++
T Consensus       210 ~~~a~~~~~~~  220 (239)
T TIGR01830       210 EEVANAVAFLA  220 (239)
T ss_pred             HHHHHHHHHHh
Confidence            99999988765

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.80  E-value=2.6e-18  Score=138.24  Aligned_cols=163  Identities=12%  Similarity=0.053  Sum_probs=120.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----------cCCc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------LIEV   98 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----------~~~~   98 (259)
                      +++++++||||+|+||.+++++|+++|+. |++++|+.....+...+.....++.++.+|+++.+           ..++
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i   81 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGAR-LLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGI   81 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence            45789999999999999999999999998 99998864433222222212347889999999977           2578


Q ss_pred             CEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           99 DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        99 d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      |++||+||.....    ....+.+..+++|+.++..+++.+.+    .+. ++|++||...+.                +
T Consensus        82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------~  145 (263)
T PRK09072         82 NVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSI----------------G  145 (263)
T ss_pred             CEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCc----------------C
Confidence            9999999875431    12234567888999999999888754    333 889998865332                1


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                      ......|+.+|.+.+.+++.++.+   .+++++.+.|+.+..+
T Consensus       146 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~  188 (263)
T PRK09072        146 YPGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTA  188 (263)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccc
Confidence            122356999999999999888765   4789999999877654

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.3e-18  Score=138.17  Aligned_cols=159  Identities=16%  Similarity=0.095  Sum_probs=119.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---------cCCcCEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------LIEVDQIY  102 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---------~~~~d~vi  102 (259)
                      +++++||||+|+||.+++++|+++|++ |++++|+..... .+...  ..++.++.+|+++.+         ...+|.+|
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~G~~-V~~~~r~~~~~~-~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i   76 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQGWQ-VIACGRNQSVLD-ELHTQ--SANIFTLAFDVTDHPGTKAALSQLPFIPELWI   76 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhCCCE-EEEEECCHHHHH-HHHHh--cCCCeEEEeeCCCHHHHHHHHHhcccCCCEEE
Confidence            368999999999999999999999998 999988543221 12111  236788999999987         23478999


Q ss_pred             EccCCCCc-c---ccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCc
Q 025022          103 HLACPASP-I---FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSC  175 (259)
Q Consensus       103 ~~a~~~~~-~---~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~  175 (259)
                      |+||.... .   ...++.+..+++|+.++.++++++...   +.++|++||.....                +......
T Consensus        77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~----------------~~~~~~~  140 (240)
T PRK06101         77 FNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL----------------ALPRAEA  140 (240)
T ss_pred             EcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc----------------CCCCCch
Confidence            99985432 1   122335678999999999999988763   33899999864221                2223457


Q ss_pred             hHHHHHHHHHHHHHHHH---HhCCcEEEEEeccccCCC
Q 025022          176 YDEGKRVAETLMFDYHR---QHGIEIRIARIFNTYGPR  210 (259)
Q Consensus       176 Y~~sK~~~e~~~~~~~~---~~~~~~~~lr~~~v~g~~  210 (259)
                      |+.+|.+.+.+.+.++.   .+++++++++|+.++++.
T Consensus       141 Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~  178 (240)
T PRK06101        141 YGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPL  178 (240)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCC
Confidence            99999999999998874   458999999999999875

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.80  E-value=4e-18  Score=137.85  Aligned_cols=161  Identities=14%  Similarity=0.049  Sum_probs=118.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc---hhh---hcc--CCCceeEeecccCccc-------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLR---KWI--GHPRFELIRHDVTEPL-------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~---~~~--~~~~~~~~~~dl~~~~-------   94 (259)
                      +++++++||||+|+||.++++.|+++|++ |+++.|+......   .++   ..+  ...++.++.+|+++.+       
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~   82 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGAN-IVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA   82 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence            56789999999999999999999999998 8888886543211   111   111  1236788899999987       


Q ss_pred             -----cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCC
Q 025022           95 -----LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 -----~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                           +.++|++||+||......    ..++.+..+++|+.++..+++++..    .+. ++|++||......       
T Consensus        83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~-------  155 (273)
T PRK08278         83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP-------  155 (273)
T ss_pred             HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc-------
Confidence                 357999999999654321    2234577888999999999998854    223 8888887532210       


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEecc
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFN  205 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~  205 (259)
                             ....+...|+.+|.+.|.+++.++.+.   +++++.+.|+.
T Consensus       156 -------~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~  196 (273)
T PRK08278        156 -------KWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRT  196 (273)
T ss_pred             -------cccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Confidence                   011445689999999999999998764   78999999874

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.80  E-value=4.5e-18  Score=135.06  Aligned_cols=196  Identities=16%  Similarity=0.108  Sum_probs=131.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc-chhhhc-cCCCceeEeecccCccc------------cCCc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKW-IGHPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      |+++||||+|+||.++++.|+++|++ |+++.|+..... +..... ....++.++.+|+.+++            ..++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYR-VAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI   79 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            57999999999999999999999998 888777322111 111111 11246888999999876            3569


Q ss_pred             CEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           99 DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        99 d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      |+|||++|.....    ....+++..++.|+.++..+++.+    ++.+. ++|++||.....                +
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~----------------~  143 (242)
T TIGR01829        80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQK----------------G  143 (242)
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC----------------C
Confidence            9999999865421    122345677889999887765544    45555 999999864332                1


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      ......|..+|.+.+.+++.++++   .+++++.++|+.+.++....    ....+........+..         .+..
T Consensus       144 ~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~----~~~~~~~~~~~~~~~~---------~~~~  210 (242)
T TIGR01829       144 QFGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMA----MREDVLNSIVAQIPVG---------RLGR  210 (242)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccc----cchHHHHHHHhcCCCC---------CCcC
Confidence            223356999999999988887654   48999999999998875322    1122333333222211         2345


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      .+|+++++.+++
T Consensus       211 ~~~~a~~~~~l~  222 (242)
T TIGR01829       211 PEEIAAAVAFLA  222 (242)
T ss_pred             HHHHHHHHHHHc
Confidence            688888876653

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.80  E-value=5.8e-19  Score=158.39  Aligned_cols=161  Identities=19%  Similarity=0.155  Sum_probs=118.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||+|+||+++++.|+++|+. |++++|+...........   .....+..+.+|+++.+            
T Consensus       412 l~gkvvLVTGasggIG~aiA~~La~~Ga~-Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~  490 (676)
T TIGR02632       412 LARRVAFVTGGAGGIGRETARRLAAEGAH-VVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA  490 (676)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            66899999999999999999999999998 998888643322111111   12235678899999877            


Q ss_pred             cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhC--CeEEEEecceeecCCCCCCCCCCCc
Q 025022           95 LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +.++|++||+||......    ...+++..+++|+.+...+++.+    ++.+  .+||++||...+.            
T Consensus       491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~------------  558 (676)
T TIGR02632       491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY------------  558 (676)
T ss_pred             cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC------------
Confidence            357999999999754321    12345677888888877765444    3443  2899999975432            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEecccc
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTY  207 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~  207 (259)
                          +......|+.+|.+.+.+++.++.+   .+++++.++|+.++
T Consensus       559 ----~~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~  600 (676)
T TIGR02632       559 ----AGKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVL  600 (676)
T ss_pred             ----CCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCcee
Confidence                2223467999999999999998876   37999999999887

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=99.80  E-value=2e-18  Score=129.92  Aligned_cols=217  Identities=19%  Similarity=0.187  Sum_probs=159.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQ  100 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~  100 (259)
                      ..+..+|||||+-|.+|..+++.|..+ |...|+..+-.+++.. .+      ..-.++-.|+.|..       ..++|.
T Consensus        41 ~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~-V~------~~GPyIy~DILD~K~L~eIVVn~RIdW  113 (366)
T KOG2774|consen   41 TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPAN-VT------DVGPYIYLDILDQKSLEEIVVNKRIDW  113 (366)
T ss_pred             cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchh-hc------ccCCchhhhhhccccHHHhhcccccce
Confidence            345679999999999999999999887 6554666554332211 11      13346677777766       568999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      +||..+..+. ..+.+.....++|+.|..|+++.+++++.++...|++++||..+...-+.+    .+-..|...||.||
T Consensus       114 L~HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPSTIGAFGPtSPRNPTPd----ltIQRPRTIYGVSK  188 (366)
T KOG2774|consen  114 LVHFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKLKVFVPSTIGAFGPTSPRNPTPD----LTIQRPRTIYGVSK  188 (366)
T ss_pred             eeeHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCeeEeecccccccCCCCCCCCCCC----eeeecCceeechhH
Confidence            9998876553 456666677889999999999999999999999999999997554322211    12567889999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-cc-HHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GR-VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ..+|.+-+.+-...++++..+|.+.++........ .. .+..+..+..+|+ ...+-.++...++.|..|+-++++.++
T Consensus       189 VHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk-~tCylrpdtrlpmmy~~dc~~~~~~~~  267 (366)
T KOG2774|consen  189 VHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGK-HTCYLRPDTRLPMMYDTDCMASVIQLL  267 (366)
T ss_pred             HHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCC-cccccCCCccCceeehHHHHHHHHHHH
Confidence            99999999999999999999999988874332222 11 3333434444444 455667788899999999999887664

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.6e-18  Score=140.26  Aligned_cols=157  Identities=13%  Similarity=0.028  Sum_probs=118.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVD   99 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d   99 (259)
                      +|+++||||+|+||+++++.|+++|++ |++++|+..... .+.    ..++.++.+|+.+.+            ..++|
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~-~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   74 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGYE-VWATARKAEDVE-ALA----AAGFTAVQLDVNDGAALARLAEELEAEHGGLD   74 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHH----HCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            478999999999999999999999998 998888543221 111    125678899998866            35799


Q ss_pred             EEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH---hCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          100 QIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR---VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       100 ~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      ++||+||.....    ....+.+..+++|+.++..+++++..   .+. ++|++||...+.                +..
T Consensus        75 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~  138 (274)
T PRK05693         75 VLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVL----------------VTP  138 (274)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccC----------------CCC
Confidence            999999965432    12244667889999999999887743   233 899999875433                122


Q ss_pred             CCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      ....|+.+|.+.+.+.+.++.+   .++++++++||.+..+.
T Consensus       139 ~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~  180 (274)
T PRK05693        139 FAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF  180 (274)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence            3457999999999998887765   58999999999997653

>TIGR02415 23BDH acetoin reductases

Probab=99.80  E-value=4.4e-18  Score=136.14  Aligned_cols=161  Identities=21%  Similarity=0.140  Sum_probs=118.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cCCcC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LIEVD   99 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~~~d   99 (259)
                      ++++||||+|+||.+++++|++.|+. |+++.|+.....+..+.... ..++.++.+|+++++            ..++|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   79 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFA-VAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD   79 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            57999999999999999999999998 88888864322222222111 235788999999877            35689


Q ss_pred             EEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC--CeEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022          100 QIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus       100 ~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      +|||++|.....    ....+.+..+++|+.++..+++++.+    .+  .++|++||.....                +
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~  143 (254)
T TIGR02415        80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHE----------------G  143 (254)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcC----------------C
Confidence            999999875321    22344567899999998877766543    33  2899999865432                1


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                      ......|+.+|.+.+.+++.++.+.   ++++++++|+.+..+.
T Consensus       144 ~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~  187 (254)
T TIGR02415       144 NPILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPM  187 (254)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChh
Confidence            2234679999999999999887664   7999999999886653

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.80  E-value=2.2e-18  Score=138.41  Aligned_cols=161  Identities=20%  Similarity=0.045  Sum_probs=121.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------------cCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------------LIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------------~~~~   98 (259)
                      +++++||||+|+||+++++.|+++|+. |++++|+.+...+ +.......++.++.+|+.+.+             ..++
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~-V~~~~r~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWR-VGAYDINEAGLAA-LAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHH-HHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            468999999999999999999999998 9998886543222 222222346889999999876             2367


Q ss_pred             CEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        99 d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      |+|||+||......    ...+.+..+++|+.++..+++++.    ..+. ++|++||...+.                +
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------------~  142 (260)
T PRK08267         79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIY----------------G  142 (260)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCc----------------C
Confidence            99999999764321    223467789999999999988774    3344 999999975332                1


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      ......|+.+|.+.+.+.+.++.+   .++++++++|+.+..+.
T Consensus       143 ~~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~  186 (260)
T PRK08267        143 QPGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAM  186 (260)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcc
Confidence            122357999999999999998754   47999999999887654

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.80  E-value=1.6e-18  Score=136.85  Aligned_cols=165  Identities=19%  Similarity=0.161  Sum_probs=120.3

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc---chhhhccCCCceeEeecccCccc--------
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWIGHPRFELIRHDVTEPL--------   94 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~dl~~~~--------   94 (259)
                      .+..+.+|+|+|||||.+||.+++.+|.++|.. ++.+.|+.....   +.+++.....++..+++|+++.+        
T Consensus         6 ~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~-l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~   84 (282)
T KOG1205|consen    6 FMERLAGKVVLITGASSGIGEALAYELAKRGAK-LVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEW   84 (282)
T ss_pred             cHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCc-eEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHH
Confidence            345577899999999999999999999999998 555555433322   22333333235899999999988        


Q ss_pred             ----cCCcCEEEEccCCCCccccc----cChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCC
Q 025022           95 ----LIEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 ----~~~~d~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                          ++++|++|||||........    .+....+++|+.|+..+.+++    ++.+. +||.+||+.-+-         
T Consensus        85 ~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~---------  155 (282)
T KOG1205|consen   85 AIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKM---------  155 (282)
T ss_pred             HHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccccc---------
Confidence                78999999999987632222    234568899999988887766    45553 999999987543         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEE----EEEecccc
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIR----IARIFNTY  207 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~----~lr~~~v~  207 (259)
                             +.+....|.+||++.+.+.+.++.+.....+    ++-||.|-
T Consensus       156 -------~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~  198 (282)
T KOG1205|consen  156 -------PLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIE  198 (282)
T ss_pred             -------CCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCcee
Confidence                   2233347999999999999999887643332    35566653

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=99.80  E-value=8.7e-19  Score=146.60  Aligned_cols=225  Identities=21%  Similarity=0.188  Sum_probs=155.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCCCCCc--chhhhccC--------------CCceeEeeccc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSK--DNLRKWIG--------------HPRFELIRHDV   90 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~--~~~~~~~~--------------~~~~~~~~~dl   90 (259)
                      ...+++|+|||||||+|.-++++|+..-  ...++.+.|.+....  +++..+..              ..++..+.||+
T Consensus         9 f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi   88 (467)
T KOG1221|consen    9 FYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDI   88 (467)
T ss_pred             HhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccc
Confidence            4568999999999999999999998863  335899988765432  23322211              25788899999


Q ss_pred             Cccc-----------cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCC---
Q 025022           91 TEPL-----------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDP---  154 (259)
Q Consensus        91 ~~~~-----------~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~---  154 (259)
                      ++++           ..++++|||+|+...   ..+.......+|+.|++++++.|++...  -++|+||+++--..   
T Consensus        89 ~~~~LGis~~D~~~l~~eV~ivih~AAtvr---Fde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i  165 (467)
T KOG1221|consen   89 SEPDLGISESDLRTLADEVNIVIHSAATVR---FDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHI  165 (467)
T ss_pred             cCcccCCChHHHHHHHhcCCEEEEeeeeec---cchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecccccc
Confidence            9988           457899999998653   3445667788999999999999999876  89999998765211   


Q ss_pred             CCCCCCCCC---cC---------C------CCC---CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC
Q 025022          155 LVHPQDESY---WG---------N------VNP---IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI  213 (259)
Q Consensus       155 ~~~~~~e~~---~~---------~------~~~---~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~  213 (259)
                      .+.++.+..   +.         +      ..+   ....+.|..+|+.+|.++...+.  +++.+|+||+.|.+....|
T Consensus       166 ~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~st~~EP  243 (467)
T KOG1221|consen  166 EEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIITSTYKEP  243 (467)
T ss_pred             cccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCceeccccCC
Confidence            111121111   00         0      000   12346799999999999977654  6899999999999876655


Q ss_pred             CCccHH-----HHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          214 DDGRVV-----SNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       214 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ..++.-     ..++-..-.|.--.+..+.+...|+|.+|.++.+++.+.
T Consensus       244 ~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~  293 (467)
T KOG1221|consen  244 FPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASA  293 (467)
T ss_pred             CCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHH
Confidence            433211     111112223332334467788999999999999988653

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.80  E-value=3.6e-18  Score=136.16  Aligned_cols=163  Identities=17%  Similarity=0.083  Sum_probs=117.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCcc--c-----------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEP--L-----------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~--~-----------   94 (259)
                      +.+++++||||+|+||.+++++|++.|+. |++++|+........+++.  ...++.++.+|+.+.  +           
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGAT-VILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCc-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            56899999999999999999999999998 9999886533222212111  123566777888632  1           


Q ss_pred             -cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                       ..++|+|||+||....     +.....++..+++|+.++..+++++.    +.+. +||++||.....           
T Consensus        89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~-----------  157 (247)
T PRK08945         89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQ-----------  157 (247)
T ss_pred             HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcC-----------
Confidence             4579999999986432     12234467789999999888887764    4455 999999975432           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP  209 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~  209 (259)
                           +......|+.+|.+.+.+++.++.+.   ++++++++|+.+-++
T Consensus       158 -----~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~  201 (247)
T PRK08945        158 -----GRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTA  201 (247)
T ss_pred             -----CCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCc
Confidence                 12233569999999999999887765   688888888877654

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.80  E-value=2.3e-18  Score=136.97  Aligned_cols=162  Identities=12%  Similarity=0.080  Sum_probs=120.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc--cCCCceeEeecccCccc---------cCCcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL---------LIEVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~dl~~~~---------~~~~d~  100 (259)
                      +|+++||||+|+||.++++.|+++|++ |++++|+.....+..+..  ....++.++.+|+++.+         ...+|.
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~   79 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGAR-LYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI   79 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence            478999999999999999999999998 999998754332222221  11347889999999876         235799


Q ss_pred             EEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          101 IYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       101 vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      +||++|......    ...+....+++|+.++..+++++.+    .+. ++|++||.....                +..
T Consensus        80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~  143 (243)
T PRK07102         80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDR----------------GRA  143 (243)
T ss_pred             EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccC----------------CCC
Confidence            999998654321    2233456788999999999887654    344 899999975322                112


Q ss_pred             CCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      ....|+.+|.+.+.+.+.++.+   .++++.+++|+.+.++.
T Consensus       144 ~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~  185 (243)
T PRK07102        144 SNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPM  185 (243)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChh
Confidence            2356999999999999988654   47999999999998863

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.80  E-value=6.1e-18  Score=134.12  Aligned_cols=193  Identities=15%  Similarity=0.075  Sum_probs=133.4

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------cCCcCE
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------LIEVDQ  100 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~~~~d~  100 (259)
                      ++||||+|+||.++++.|+++|++ |+++.|+.....+.....+  ...++.++.+|+++.+            ..++|.
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~   79 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFE-ICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG   79 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            689999999999999999999998 8887764332222221111  1246889999999887            456899


Q ss_pred             EEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH-----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          101 IYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       101 vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      +||++|.....    ....+++..+++|+.++..+++++.     +.+. +||++||...+.                +.
T Consensus        80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~----------------~~  143 (239)
T TIGR01831        80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVM----------------GN  143 (239)
T ss_pred             EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhcc----------------CC
Confidence            99999865431    2234567789999999999988652     2333 899999975433                12


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      .....|+.+|.+.+.+.+.++.+   .+++++.++|+.+.++....    . ...........++         ..+...
T Consensus       144 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~-~~~~~~~~~~~~~---------~~~~~~  209 (239)
T TIGR01831       144 RGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAE----V-EHDLDEALKTVPM---------NRMGQP  209 (239)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchh----h-hHHHHHHHhcCCC---------CCCCCH
Confidence            23356999999999988888765   47999999999988765321    1 1111222222221         124477


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|+++++++++
T Consensus       210 ~~va~~~~~l~  220 (239)
T TIGR01831       210 AEVASLAGFLM  220 (239)
T ss_pred             HHHHHHHHHHc
Confidence            99999998875

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.79  E-value=7.2e-18  Score=135.25  Aligned_cols=200  Identities=16%  Similarity=0.058  Sum_probs=136.4

Q ss_pred             ccCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCCc--chhhhccCCCceeEeecccCccc----------
Q 025022           29 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWIGHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        29 ~~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~dl~~~~----------   94 (259)
                      .+++++++||||+  +.||.+++++|+++|++ |++..|+.....  +.+....  ....++.+|+++.+          
T Consensus         7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~-v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~   83 (258)
T PRK07533          7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAE-LAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIA   83 (258)
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHH
Confidence            3678999999998  59999999999999998 888887643211  1222211  23457889999887          


Q ss_pred             --cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                        +.++|++|||||....        +...++++..+++|+.++..+++++...   +.++|++||.....         
T Consensus        84 ~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~---------  154 (258)
T PRK07533         84 EEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK---------  154 (258)
T ss_pred             HHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc---------
Confidence              4679999999996431        1122456788999999999998877542   23899999864321         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                             +......|+.+|.+.+.+.+.++.+   +++++..+.||.+-.+..... . .............+       
T Consensus       155 -------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~-~-~~~~~~~~~~~~~p-------  218 (258)
T PRK07533        155 -------VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGI-D-DFDALLEDAAERAP-------  218 (258)
T ss_pred             -------CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhcc-C-CcHHHHHHHHhcCC-------
Confidence                   2223457999999999999998875   479999999998876532110 0 01112222222111       


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                        ...+...+|++.++++++
T Consensus       219 --~~r~~~p~dva~~~~~L~  236 (258)
T PRK07533        219 --LRRLVDIDDVGAVAAFLA  236 (258)
T ss_pred             --cCCCCCHHHHHHHHHHHh
Confidence              112567899999998875

>PRK06484 short chain dehydrogenase; Validated

Probab=99.79  E-value=5.1e-18  Score=149.31  Aligned_cols=200  Identities=18%  Similarity=0.155  Sum_probs=141.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      ..+++++||||+|+||.++++.|+++|++ |+++.|+.....+ +.+.. ..++..+.+|+++.+            +++
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  343 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGDR-LLIIDRDAEGAKK-LAEAL-GDEHLSVQADITDEAAVESAFAQIQARWGR  343 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH-HHHHh-CCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999998 9988886433222 22212 235677899999887            467


Q ss_pred             cCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHHh--C-CeEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           98 VDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        98 ~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      +|++||+||....     .....+++..+++|+.++..+++++...  + .+||++||...+.                +
T Consensus       344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~  407 (520)
T PRK06484        344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL----------------A  407 (520)
T ss_pred             CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC----------------C
Confidence            9999999996532     1123456788999999999999887653  2 2999999986543                3


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      ..+...|+.+|++.+.+++.++.+.   +++++.++||.+.++........ -...........++         ..+..
T Consensus       408 ~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~  477 (520)
T PRK06484        408 LPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKAS-GRADFDSIRRRIPL---------GRLGD  477 (520)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccc-cHHHHHHHHhcCCC---------CCCcC
Confidence            3344679999999999999988764   79999999999987642110000 00111122222111         12457


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|+|+++++++
T Consensus       478 ~~dia~~~~~l~  489 (520)
T PRK06484        478 PEEVAEAIAFLA  489 (520)
T ss_pred             HHHHHHHHHHHh
Confidence            899999998875

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.79  E-value=1.1e-17  Score=134.15  Aligned_cols=202  Identities=12%  Similarity=-0.004  Sum_probs=135.4

Q ss_pred             ccCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCC--cchhhhccCCCceeEeecccCccc----------
Q 025022           29 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNLRKWIGHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        29 ~~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~dl~~~~----------   94 (259)
                      .+++|+++||||+  +.||.+++++|+++|++ |++..|+....  .+.+.......++..+.+|+++++          
T Consensus         4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   82 (257)
T PRK08594          4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAK-LVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIK   82 (257)
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence            3568999999997  89999999999999998 88877643211  122222222246778899999987          


Q ss_pred             --cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                        +.++|++||+||....        +.....+...+++|+.++..+++++.+.   +.+||++||.....         
T Consensus        83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~---------  153 (257)
T PRK08594         83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER---------  153 (257)
T ss_pred             HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc---------
Confidence              4679999999986431        1112234567888999988887776543   23899999875321         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                             +......|+.+|.+.+.+.+.++.+.   +++++.+.||.+..+...... . ............+       
T Consensus       154 -------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~-~-~~~~~~~~~~~~p-------  217 (257)
T PRK08594        154 -------VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVG-G-FNSILKEIEERAP-------  217 (257)
T ss_pred             -------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhc-c-ccHHHHHHhhcCC-------
Confidence                   22233579999999999999988654   799999999988765311000 0 0011111111111       


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                        ...+...+|+++++++++
T Consensus       218 --~~r~~~p~~va~~~~~l~  235 (257)
T PRK08594        218 --LRRTTTQEEVGDTAAFLF  235 (257)
T ss_pred             --ccccCCHHHHHHHHHHHc
Confidence              123567899999998875

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.79  E-value=9.6e-18  Score=134.66  Aligned_cols=200  Identities=13%  Similarity=0.008  Sum_probs=134.9

Q ss_pred             cCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC-CceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~dl~~~~------------   94 (259)
                      +++|+++||||++  .||.++++.|+++|++ |++..|+. ...+.+++.... .....+.+|+++.+            
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~-v~~~~r~~-~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGAE-LWFTYQSE-VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEK   83 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCCE-EEEEeCch-HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHH
Confidence            5678999999997  8999999999999998 88777752 112222222111 12235789999987            


Q ss_pred             cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                      +.++|++||+||....        +...++++..+++|+.++..+++.+.+.   +.+||++||.....           
T Consensus        84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~-----------  152 (260)
T PRK06603         84 WGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK-----------  152 (260)
T ss_pred             cCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc-----------
Confidence            4679999999986431        1123456778999999999988876432   23899999865322           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                           +......|+.+|++.+.+.+.++.+   +++++..+.||.+-.+...... . ............+         
T Consensus       153 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~-~-~~~~~~~~~~~~p---------  216 (260)
T PRK06603        153 -----VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIG-D-FSTMLKSHAATAP---------  216 (260)
T ss_pred             -----CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCC-C-cHHHHHHHHhcCC---------
Confidence                 2223357999999999999998875   4799999999988765311000 0 0111122221111         


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+...+|+|+++++++
T Consensus       217 ~~r~~~pedva~~~~~L~  234 (260)
T PRK06603        217 LKRNTTQEDVGGAAVYLF  234 (260)
T ss_pred             cCCCCCHHHHHHHHHHHh
Confidence            112567899999999876

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.79  E-value=1.3e-17  Score=133.81  Aligned_cols=200  Identities=15%  Similarity=0.068  Sum_probs=134.4

Q ss_pred             cCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||++  .||+++++.|+++|+. |++..|+. ...+..++... ......+.+|+++.+            
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~-vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   81 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKV   81 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCE-EEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhh
Confidence            5678999999985  8999999999999998 88777752 21222222211 134567889999977            


Q ss_pred             cCCcCEEEEccCCCCcc---------ccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                      +.++|++||+||.....         ....+++..+++|+.++..+.+++...   +.+||++||.....          
T Consensus        82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~----------  151 (262)
T PRK07984         82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------  151 (262)
T ss_pred             cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC----------
Confidence            46799999999964321         112345567889999988888876542   23899999865321          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +......|+.+|.+.+.+.+.++.+   +++++..+.||.+..+.... ... ............+.       
T Consensus       152 ------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-~~~-~~~~~~~~~~~~p~-------  216 (262)
T PRK07984        152 ------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASG-IKD-FRKMLAHCEAVTPI-------  216 (262)
T ss_pred             ------CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhc-CCc-hHHHHHHHHHcCCC-------
Confidence                  2233457999999999999999876   47999999999886642110 000 11111111111111       


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                        ..+...+|++.++++++
T Consensus       217 --~r~~~pedva~~~~~L~  233 (262)
T PRK07984        217 --RRTVTIEDVGNSAAFLC  233 (262)
T ss_pred             --cCCCCHHHHHHHHHHHc
Confidence              12567899999998875

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.79  E-value=7.9e-18  Score=135.99  Aligned_cols=198  Identities=14%  Similarity=0.041  Sum_probs=134.4

Q ss_pred             cCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc----------
Q 025022           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~----------   94 (259)
                      +++|+++||||+  +.||+++++.|+++|++ |++..|+.. ..+.++..   .. .. ..+.+|+++.+          
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~-Vil~~r~~~-~~~~~~~~~~~~~-~~-~~~~~Dv~d~~~v~~~~~~i~   78 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAE-LAFTYLNEA-LKKRVEPIAQELG-SD-YVYELDVSKPEHFKSLAESLK   78 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEecCHH-HHHHHHHHHHhcC-Cc-eEEEecCCCHHHHHHHHHHHH
Confidence            567999999997  79999999999999998 888887532 11222221   11 12 57889999987          


Q ss_pred             --cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                        +.++|++||+||....        +...++++..+++|+.++..+.+++.+.   +.+||++||.....         
T Consensus        79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~---------  149 (274)
T PRK08415         79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK---------  149 (274)
T ss_pred             HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc---------
Confidence              4679999999996431        1123456778999999999998877542   22899999864321         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                             +......|+.+|++.+.+.+.++.+   +|+++..+.||.+..+..... . -...........  .+     
T Consensus       150 -------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-~-~~~~~~~~~~~~--~p-----  213 (274)
T PRK08415        150 -------YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGI-G-DFRMILKWNEIN--AP-----  213 (274)
T ss_pred             -------CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhcc-c-hhhHHhhhhhhh--Cc-----
Confidence                   2223356999999999999998875   479999999998876531100 0 000000000011  11     


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                        ...+...+|+++++++++
T Consensus       214 --l~r~~~pedva~~v~fL~  231 (274)
T PRK08415        214 --LKKNVSIEEVGNSGMYLL  231 (274)
T ss_pred             --hhccCCHHHHHHHHHHHh
Confidence              112567899999998875

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.78  E-value=1.4e-17  Score=133.81  Aligned_cols=200  Identities=13%  Similarity=0.004  Sum_probs=133.7

Q ss_pred             cCCCEEEEEcC--chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||  ++.||+++++.|+++|++ |++..|.. ...+.+++... ......+.+|+++.+            
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~-v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAE-LAFTYVVD-KLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKH   81 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCcH-HHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHH
Confidence            56789999997  679999999999999998 88776642 22222322211 123457899999987            


Q ss_pred             cCCcCEEEEccCCCCcc---------ccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                      +.++|++|||||.....         .....++..+++|+.++..+.+++..    .+.+||++||...+.         
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~---------  152 (261)
T PRK08690         82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR---------  152 (261)
T ss_pred             hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc---------
Confidence            46899999999975421         11123456678899888888776543    223899999875432         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                             +......|+.+|.+.+.+.+.++.+   +|+++..+.||.+-.+......  ........+....+       
T Consensus       153 -------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~--~~~~~~~~~~~~~p-------  216 (261)
T PRK08690        153 -------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIA--DFGKLLGHVAAHNP-------  216 (261)
T ss_pred             -------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCC--chHHHHHHHhhcCC-------
Confidence                   2233467999999999999988754   5799999999988765321100  00111122222112       


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                        ...+...+|+|+++.+++
T Consensus       217 --~~r~~~peevA~~v~~l~  234 (261)
T PRK08690        217 --LRRNVTIEEVGNTAAFLL  234 (261)
T ss_pred             --CCCCCCHHHHHHHHHHHh
Confidence              123567899999998876

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.78  E-value=5e-18  Score=134.50  Aligned_cols=165  Identities=12%  Similarity=0.006  Sum_probs=121.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++|+||||+|+||+++++.|+++|++ |++++|+........+......++.++.+|+.+.+            ..+
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   81 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQ-VCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNA   81 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            45789999999999999999999999998 99999865432221122111236788999999876            345


Q ss_pred             cCEEEEccCCCCcc--ccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcCCCCCCCC
Q 025022           98 VDQIYHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV  172 (259)
Q Consensus        98 ~d~vi~~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~  172 (259)
                      +|.+||++|.....  ....+.+..++.|+.++..+++.+.+.   +.++|++||......               +..+
T Consensus        82 id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~---------------~~~~  146 (238)
T PRK05786         82 IDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK---------------ASPD  146 (238)
T ss_pred             CCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc---------------CCCC
Confidence            79999999854321  111345667889999988888777553   338999998653211               2233


Q ss_pred             CCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          173 RSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                      ...|+.+|.+.+.+++.++.+.   +++++++||++++++.
T Consensus       147 ~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~  187 (238)
T PRK05786        147 QLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDF  187 (238)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCC
Confidence            4579999999999998887654   8999999999999874

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.78  E-value=1.5e-17  Score=134.06  Aligned_cols=195  Identities=14%  Similarity=0.059  Sum_probs=130.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC---CCceeEeecccCccc---------------
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPL---------------   94 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~dl~~~~---------------   94 (259)
                      ++++||||+|+||.+++++|+++|+. |+++.|+.....+.+...+.   ..++.++.+|+++.+               
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~   80 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYR-VVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR   80 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCe-EEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence            57999999999999999999999998 88876543222222211111   134667899999874               


Q ss_pred             -cCCcCEEEEccCCCCcccc----cc-----------ChhHHHHHhhhhHHHHHHHHHHhC----------C-eEEEEec
Q 025022           95 -LIEVDQIYHLACPASPIFY----KY-----------NPVKTIKTNVIGTLNMLGLAKRVG----------A-RILLTST  147 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~~----~~-----------~~~~~~~~n~~~~~~l~~~~~~~~----------~-~~i~~Ss  147 (259)
                       +.++|+|||+||.......    ..           .....+++|+.++..+++++.+..          . +++++||
T Consensus        81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s  160 (267)
T TIGR02685        81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCD  160 (267)
T ss_pred             ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehh
Confidence             3579999999996532111    11           245678999999999988764321          1 5777776


Q ss_pred             ceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHH
Q 025022          148 SEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIA  224 (259)
Q Consensus       148 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~  224 (259)
                      .....                +..+...|+.+|.+.+.+++.++.+   .|++++.++||.+..|...+      .....
T Consensus       161 ~~~~~----------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~------~~~~~  218 (267)
T TIGR02685       161 AMTDQ----------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP------FEVQE  218 (267)
T ss_pred             hhccC----------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc------hhHHH
Confidence            54321                3345567999999999999998776   58999999999887654211      11112


Q ss_pred             HHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          225 QAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ......+  + +     ..+...+|+++++++++
T Consensus       219 ~~~~~~~--~-~-----~~~~~~~~va~~~~~l~  244 (267)
T TIGR02685       219 DYRRKVP--L-G-----QREASAEQIADVVIFLV  244 (267)
T ss_pred             HHHHhCC--C-C-----cCCCCHHHHHHHHHHHh
Confidence            2221111  1 0     12357899999998875

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.78  E-value=1.5e-17  Score=134.26  Aligned_cols=200  Identities=13%  Similarity=0.009  Sum_probs=135.1

Q ss_pred             cCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------   94 (259)
                      |++++++||||+  +.||.++++.|+++|++ |++..|+.. ..+.+++... ......+.+|+++.+            
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~-V~l~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   85 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGAE-LAFTYQGDA-LKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK   85 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCchH-HHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence            567899999997  89999999999999998 887776421 1222222211 123556899999877            


Q ss_pred             cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                      ++++|++||+||....        +...++++..+++|+.++..+++++.+.   +.++|++||.....           
T Consensus        86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~-----------  154 (272)
T PRK08159         86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK-----------  154 (272)
T ss_pred             cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc-----------
Confidence            4679999999996531        1123456788999999999999887653   23899999864322           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                           +......|+.+|.+.+.+.+.++.+   +++++..+.||.+..+...... .. ...........+  +      
T Consensus       155 -----~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~-~~-~~~~~~~~~~~p--~------  219 (272)
T PRK08159        155 -----VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIG-DF-RYILKWNEYNAP--L------  219 (272)
T ss_pred             -----CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCC-cc-hHHHHHHHhCCc--c------
Confidence                 2233457999999999999998876   4799999999988764211100 00 000111111111  1      


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                       ..+...+|+|+++++++
T Consensus       220 -~r~~~peevA~~~~~L~  236 (272)
T PRK08159        220 -RRTVTIEEVGDSALYLL  236 (272)
T ss_pred             -cccCCHHHHHHHHHHHh
Confidence             12467899999998876

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.78  E-value=2.1e-17  Score=132.47  Aligned_cols=196  Identities=17%  Similarity=0.093  Sum_probs=132.8

Q ss_pred             cCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCC-C------Ccc---hhhhccC--CCceeEeecccCccc-
Q 025022           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFT-G------SKD---NLRKWIG--HPRFELIRHDVTEPL-   94 (259)
Q Consensus        30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~-~------~~~---~~~~~~~--~~~~~~~~~dl~~~~-   94 (259)
                      +++++++||||+|  .||.+++++|+++|++ |++..+... .      ...   .+.....  ..++.++.+|+++.+ 
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~-vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~   82 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEAGAD-IFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA   82 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            5689999999995  8999999999999998 777643210 0      011   1111111  246778899999876 


Q ss_pred             -----------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCC
Q 025022           95 -----------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDP  154 (259)
Q Consensus        95 -----------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~  154 (259)
                                 ..++|++||+||.....    ...++.+..+++|+.++..+.+++    ++.+. +||++||.....  
T Consensus        83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--  160 (256)
T PRK12859         83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG--  160 (256)
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC--
Confidence                       45689999999865321    122346678899999988886544    33334 999999976432  


Q ss_pred             CCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCC
Q 025022          155 LVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEP  231 (259)
Q Consensus       155 ~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~  231 (259)
                                    +..+...|+.+|.+.+.+.+.++.+   ++++++.++||.+-.+...       ...........+
T Consensus       161 --------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~-------~~~~~~~~~~~~  219 (256)
T PRK12859        161 --------------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMT-------EEIKQGLLPMFP  219 (256)
T ss_pred             --------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCC-------HHHHHHHHhcCC
Confidence                          3345578999999999999998765   5799999999988765321       111111211111


Q ss_pred             eEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          232 LTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       232 ~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                               ...+...+|+++++.+++
T Consensus       220 ---------~~~~~~~~d~a~~~~~l~  237 (256)
T PRK12859        220 ---------FGRIGEPKDAARLIKFLA  237 (256)
T ss_pred             ---------CCCCcCHHHHHHHHHHHh
Confidence                     112346799999998775

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.3e-17  Score=134.88  Aligned_cols=212  Identities=15%  Similarity=0.098  Sum_probs=134.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc-----------cCCcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-----------LIEVD   99 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~-----------~~~~d   99 (259)
                      +++++|||+ |+||+++++.|. +|++ |++++|+.....+..++... ..++.++.+|+++.+           ..++|
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~-Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKK-VLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            468999997 799999999996 7988 88888864332222222111 235778999999977           25799


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCC-----CCCCCCCCcCCC---C
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPL-----VHPQDESYWGNV---N  168 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~-----~~~~~e~~~~~~---~  168 (259)
                      ++||+||...   ...+++..+++|+.++.++++++.+.   +.++|++||........     ........+.+.   +
T Consensus        79 ~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (275)
T PRK06940         79 GLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLP  155 (275)
T ss_pred             EEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccccccc
Confidence            9999999753   23567889999999999999988653   23667777765432110     000001000000   0


Q ss_pred             ---C---CCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          169 ---P---IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       169 ---~---~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                         +   ..+...|+.||.+.+.+.+.++.+.   +++++.+.||.+..+.....................+        
T Consensus       156 ~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p--------  227 (275)
T PRK06940        156 FLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSP--------  227 (275)
T ss_pred             cccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCC--------
Confidence               0   0234679999999999999887653   7999999999998764211000000011112221111        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+...+|+|+++++++
T Consensus       228 -~~r~~~peeia~~~~fL~  245 (275)
T PRK06940        228 -AGRPGTPDEIAALAEFLM  245 (275)
T ss_pred             -cccCCCHHHHHHHHHHHc
Confidence             123568899999998875

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.78  E-value=1.1e-17  Score=134.07  Aligned_cols=201  Identities=13%  Similarity=0.046  Sum_probs=136.2

Q ss_pred             cCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCC--CcchhhhccC-CCceeEeecccCccc----------
Q 025022           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTG--SKDNLRKWIG-HPRFELIRHDVTEPL----------   94 (259)
Q Consensus        30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~dl~~~~----------   94 (259)
                      +++++++||||+  +.||.+++++|++.|++ |++..++.+.  ..+.+++... ...+.++.+|+++.+          
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~   82 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAE-LGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK   82 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence            568999999986  79999999999999998 7776654321  1222222211 124667899999987          


Q ss_pred             --cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                        +.++|++||+||....        ....++++..+++|+.++..+++++.+.   +.+||++||.....         
T Consensus        83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~---------  153 (258)
T PRK07370         83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR---------  153 (258)
T ss_pred             HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc---------
Confidence              4689999999996531        1122446778899999999988876532   23899999865322         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                             +......|+.+|.+.+.+.+.++.+.   +++++.+.||.+-.+...... . ............+       
T Consensus       154 -------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~-~-~~~~~~~~~~~~p-------  217 (258)
T PRK07370        154 -------AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVG-G-ILDMIHHVEEKAP-------  217 (258)
T ss_pred             -------CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccc-c-chhhhhhhhhcCC-------
Confidence                   22334579999999999999998764   799999999998775321000 0 0111111111111       


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                        ...+...+|++.++.+++
T Consensus       218 --~~r~~~~~dva~~~~fl~  235 (258)
T PRK07370        218 --LRRTVTQTEVGNTAAFLL  235 (258)
T ss_pred             --cCcCCCHHHHHHHHHHHh
Confidence              123567899999998876

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.7e-17  Score=134.15  Aligned_cols=161  Identities=16%  Similarity=0.131  Sum_probs=117.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------cCCc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      |+++||||+|+||.++++.|+++|+. |+++.|+.+......++..  ......++.+|+.+.+            ..++
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~-vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAE-LFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            57999999999999999999999998 8888886433222222111  1123455789998866            4578


Q ss_pred             CEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           99 DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        99 d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      |++||++|.....    ...++.+..+++|+.++..+++++..    .+ . +||++||...+.                
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~----------------  143 (272)
T PRK07832         80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV----------------  143 (272)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC----------------
Confidence            9999999865321    22344677899999999999988642    22 2 899999975332                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      +......|+.+|.+.+.+.+.++.+   +++++++++||.+.++.
T Consensus       144 ~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~  188 (272)
T PRK07832        144 ALPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPL  188 (272)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcc
Confidence            2223456999999999888877643   58999999999998875

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.78  E-value=4.7e-18  Score=136.65  Aligned_cols=162  Identities=18%  Similarity=0.119  Sum_probs=120.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||.+++++|+++|++ |+++.|+..... .+.... ..++..+.+|+.+.+            +.+
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~-~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGAR-VAVLDKSAAGLQ-ELEAAH-GDAVVGVEGDVRSLDDHKEAVARCVAAFGK   79 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHhhc-CCceEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            56789999999999999999999999998 888888543222 122111 235778899999865            367


Q ss_pred             cCEEEEccCCCCcc-c----cc----cChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEecceeecCCCCCCCCCCCc
Q 025022           98 VDQIYHLACPASPI-F----YK----YNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        98 ~d~vi~~a~~~~~~-~----~~----~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +|++||+||..... .    ..    .+++..+++|+.++..+++++.+.    +.++|++||...+.            
T Consensus        80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~------------  147 (262)
T TIGR03325        80 IDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY------------  147 (262)
T ss_pred             CCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec------------
Confidence            99999999864211 0    11    235678899999999999888653    22788888875442            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGPR  210 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~lr~~~v~g~~  210 (259)
                          +......|+.+|.+.+.+++.++.+.+  +++..+.||.+..+.
T Consensus       148 ----~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~  191 (262)
T TIGR03325       148 ----PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDL  191 (262)
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCC
Confidence                222335799999999999999988753  889999999987764

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.78  E-value=2.3e-17  Score=134.25  Aligned_cols=196  Identities=14%  Similarity=0.067  Sum_probs=132.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC---------CCCcchhhhccC-CCceeEeecccCccc-----
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---------TGSKDNLRKWIG-HPRFELIRHDVTEPL-----   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~---------~~~~~~~~~~~~-~~~~~~~~~dl~~~~-----   94 (259)
                      +++++++||||++.||.++++.|+++|++ |++++++.         .......++... ..++..+.+|+++.+     
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~   82 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL   82 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence            56789999999999999999999999998 87777653         111111111111 235778899999976     


Q ss_pred             -------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----h---C----CeEEEEecceeec
Q 025022           95 -------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----V---G----ARILLTSTSEVYG  152 (259)
Q Consensus        95 -------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~---~----~~~i~~Ss~~~~~  152 (259)
                             +.++|++||+||.....    ...++++..+++|+.++..+++++..    .   +    .+||++||.....
T Consensus        83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~  162 (286)
T PRK07791         83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQ  162 (286)
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCc
Confidence                   46899999999975421    22345678899999999888877642    1   1    2899999975432


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcC
Q 025022          153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRG  229 (259)
Q Consensus       153 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~  229 (259)
                                      +......|+.+|.+.+.+.+.++.+   ++++++.+.|+ +..+.        ...........
T Consensus       163 ----------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~--------~~~~~~~~~~~  217 (286)
T PRK07791        163 ----------------GSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRM--------TETVFAEMMAK  217 (286)
T ss_pred             ----------------CCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCc--------chhhHHHHHhc
Confidence                            2223467999999999999998776   57999999997 42221        11111111111


Q ss_pred             CCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          230 EPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       230 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+     .  ....+...+|+++++++++
T Consensus       218 ~~-----~--~~~~~~~pedva~~~~~L~  239 (286)
T PRK07791        218 PE-----E--GEFDAMAPENVSPLVVWLG  239 (286)
T ss_pred             Cc-----c--cccCCCCHHHHHHHHHHHh
Confidence            11     0  0112457899999998875

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.78  E-value=3.3e-17  Score=131.52  Aligned_cols=200  Identities=13%  Similarity=-0.014  Sum_probs=134.0

Q ss_pred             cCCCEEEEEcC--chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||  ++.||.++++.|+++|++ |++..|... ..+.+++... ......+.+|+++++            
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~-v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGAE-LAFTYVGDR-FKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQH   81 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCe-EEEEccchH-HHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHH
Confidence            56789999996  679999999999999998 877765321 1222222211 112346889999987            


Q ss_pred             cCCcCEEEEccCCCCcc---------ccccChhHHHHHhhhhHHHHHHHHHHh--C-CeEEEEecceeecCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                      ++++|++||+||.....         ...++++..+++|+.++..+++++.+.  . .++|++||.....          
T Consensus        82 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~----------  151 (260)
T PRK06997         82 WDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER----------  151 (260)
T ss_pred             hCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc----------
Confidence            47899999999975321         122356678899999999998887553  1 2899999865321          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +......|+.+|++.+.+.+.++.+   ++++++.+.||.+-.+..... . .............+        
T Consensus       152 ------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~-~-~~~~~~~~~~~~~p--------  215 (260)
T PRK06997        152 ------VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGI-K-DFGKILDFVESNAP--------  215 (260)
T ss_pred             ------CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccc-c-chhhHHHHHHhcCc--------
Confidence                  2223456999999999999998876   479999999998876431100 0 00111111111111        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+..++|+++++.+++
T Consensus       216 -~~r~~~pedva~~~~~l~  233 (260)
T PRK06997        216 -LRRNVTIEEVGNVAAFLL  233 (260)
T ss_pred             -ccccCCHHHHHHHHHHHh
Confidence             112567899999998875

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.77  E-value=2.3e-17  Score=131.84  Aligned_cols=160  Identities=13%  Similarity=0.101  Sum_probs=114.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC--C
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI--E   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~--~   97 (259)
                      +|+++||||+|+||++++++|+++|++ |++++|+.......+.... ..++.++.+|+++.+            ..  +
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~g~~-V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEKGTH-VISISRTENKELTKLAEQY-NSNLTFHSLDLQDVHELETNFNEILSSIQEDN   78 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhcCCE-EEEEeCCchHHHHHHHhcc-CCceEEEEecCCCHHHHHHHHHHHHHhcCccc
Confidence            368999999999999999999999998 9888886532222221111 246888999999876            11  1


Q ss_pred             c--CEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHH----HhC-C-eEEEEecceeecCCCCCCCCCCCc
Q 025022           98 V--DQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        98 ~--d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      .  .++||+||....     .....+....+++|+.++..+++.+.    +.+ . +||++||...+.            
T Consensus        79 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------  146 (251)
T PRK06924         79 VSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN------------  146 (251)
T ss_pred             CCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC------------
Confidence            1  278999986432     12234456678889888776665543    323 3 899999976432            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGP  209 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~lr~~~v~g~  209 (259)
                          +..+...|+.+|.+.+.+++.++.+     .++++..++||.+-.+
T Consensus       147 ----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~  192 (251)
T PRK06924        147 ----PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTN  192 (251)
T ss_pred             ----CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccH
Confidence                4445678999999999999988765     3688999999877654

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.77  E-value=2.5e-17  Score=132.27  Aligned_cols=164  Identities=14%  Similarity=0.085  Sum_probs=121.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc--------cCCcC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL--------LIEVD   99 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~--------~~~~d   99 (259)
                      +++++++|||++|.||.++++.|+++|++ |+++.|+.............  ..++.++.+|+++++        ..++|
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGCH-LHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            46789999999999999999999999997 99998865432222211111  235788999999876        46799


Q ss_pred             EEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          100 QIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       100 ~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ++||++|.....    ...++++..+++|+.+...+++++    ++.+. ++|++||.....                +.
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~----------------~~  147 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGEN----------------PD  147 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccC----------------CC
Confidence            999999865321    223456778899999988888776    33333 899998864321                22


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      .....|..+|.+.+.+.+.++.+   .+++++.+.||.+..+.
T Consensus       148 ~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~  190 (259)
T PRK06125        148 ADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDR  190 (259)
T ss_pred             CCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHH
Confidence            33456899999999999988764   47999999998887653

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.77  E-value=7.2e-18  Score=134.07  Aligned_cols=157  Identities=17%  Similarity=0.122  Sum_probs=117.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----c-----------
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L-----------   95 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~-----------   95 (259)
                      +|+++||||+|+||++++++|+++|++ |+++.|+.....   ... ...++.++.+|+.+.+     +           
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~~-v~~~~r~~~~~~---~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~   75 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGIA-VLGVARSRHPSL---AAA-AGERLAEVELDLSDAAAAAAWLAGDLLAAFVDG   75 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCCE-EEEEecCcchhh---hhc-cCCeEEEEEeccCCHHHHHHHHHHHHHHHhccC
Confidence            469999999999999999999999998 888888643211   111 1246888999998876     0           


Q ss_pred             CCcCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||++|.....     ...++++..+++|+.++..+.+.+.    +.+. +||++||...+.             
T Consensus        76 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------------  142 (243)
T PRK07023         76 ASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN-------------  142 (243)
T ss_pred             CCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC-------------
Confidence            2578999999865421     1123456778899999777665554    3344 999999986554             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH--hCCcEEEEEeccccCC
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ--HGIEIRIARIFNTYGP  209 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~lr~~~v~g~  209 (259)
                         +..+...|+.+|.+.|.+++.++.+  .++++.+++|+.+-.+
T Consensus       143 ---~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~  185 (243)
T PRK07023        143 ---AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG  185 (243)
T ss_pred             ---CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence               4445578999999999999988765  4799999999887554

>PRK05855 short chain dehydrogenase; Validated

Probab=99.76  E-value=1.4e-17  Score=148.41  Aligned_cols=166  Identities=15%  Similarity=0.035  Sum_probs=126.2

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------   94 (259)
                      ..+.+++++||||+|+||++++++|.++|++ |+++.|+.....+..+.... ..++.++.+|+++.+            
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~  389 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAE  389 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            4456789999999999999999999999999 99988864332222111111 236788999999987            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhC--CeEEEEecceeecCCCCCCCCCCCc
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      .+++|++||+||.....    ...++.+..+++|+.++.++++++.    +.+  .+||++||...+.            
T Consensus       390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------  457 (582)
T PRK05855        390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYA------------  457 (582)
T ss_pred             cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc------------
Confidence            35699999999976432    1234567788899999999888753    333  3899999998775            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                          +......|+.+|++.+.+.+.++.+   +|+++++++||.+-.+.
T Consensus       458 ----~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~  502 (582)
T PRK05855        458 ----PSRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNI  502 (582)
T ss_pred             ----CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccc
Confidence                3334567999999999999888765   48999999999886653

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.76  E-value=1.1e-16  Score=128.22  Aligned_cols=200  Identities=14%  Similarity=0.036  Sum_probs=134.1

Q ss_pred             cCCCEEEEEcC--chhhhHHHHHHHHhcCCCeEEEEcCCCC-CCcchhhhccCCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||  ++.||.+++++|+++|++ |++..|+.. ...+.+...+. ..+.++.+|+++.+            
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~-v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~   82 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAE-VVLTGFGRALRLTERIAKRLP-EPAPVLELDVTNEEHLASLADRVREH   82 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCE-EEEecCccchhHHHHHHHhcC-CCCcEEeCCCCCHHHHHHHHHHHHHH
Confidence            56789999999  899999999999999998 888877532 11222222222 25678999999987            


Q ss_pred             cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                      +.++|++||+||....        ....++.+..+++|+.++..+++++...   +.++|++|+....            
T Consensus        83 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~------------  150 (256)
T PRK07889         83 VDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV------------  150 (256)
T ss_pred             cCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc------------
Confidence            4679999999997531        1112345567899999999888876542   2278888753211            


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                           +......|+.+|++.+.+.+.++.+   +|++++.+.||.+..+.......  ............++        
T Consensus       151 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~--------  215 (256)
T PRK07889        151 -----AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPG--FELLEEGWDERAPL--------  215 (256)
T ss_pred             -----cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccC--cHHHHHHHHhcCcc--------
Confidence                 1123356899999999999998775   47999999999887753211000  01111111111111        


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      .+.+...+|+|+++++++
T Consensus       216 ~~~~~~p~evA~~v~~l~  233 (256)
T PRK07889        216 GWDVKDPTPVARAVVALL  233 (256)
T ss_pred             ccccCCHHHHHHHHHHHh
Confidence            113567899999999876

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.75  E-value=4.8e-17  Score=133.60  Aligned_cols=160  Identities=17%  Similarity=0.033  Sum_probs=117.7

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~-----------   94 (259)
                      ..+++++++||||+|+||.+++++|+++|++ |++.++......+.....+.  ..++.++.+|+++.+           
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~-Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~   86 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGAT-VVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG   86 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4467899999999999999999999999998 88877653322222211111  246788999999876           


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----h-------C-CeEEEEecceeecCCCCCC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----V-------G-ARILLTSTSEVYGDPLVHP  158 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~-------~-~~~i~~Ss~~~~~~~~~~~  158 (259)
                      +.++|++||+||.....    ....+++..+++|+.++..+++++..    .       . .++|++||...+.      
T Consensus        87 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------  160 (306)
T PRK07792         87 LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLV------  160 (306)
T ss_pred             hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccccc------
Confidence            35799999999976432    12345677889999999999887642    1       1 2899999876443      


Q ss_pred             CCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEec
Q 025022          159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIF  204 (259)
Q Consensus       159 ~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~  204 (259)
                                +......|+.+|.+.+.+.+.++.+   +|+++..+.|+
T Consensus       161 ----------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg  199 (306)
T PRK07792        161 ----------GPVGQANYGAAKAGITALTLSAARALGRYGVRANAICPR  199 (306)
T ss_pred             ----------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC
Confidence                      1223356999999999999988775   57888888886

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.75  E-value=3.1e-17  Score=148.29  Aligned_cols=167  Identities=15%  Similarity=0.054  Sum_probs=126.6

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc-----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~-----------   94 (259)
                      ...+++++++||||+|+||.++++.|+++|++ |+++.|+.....+..+... ...++.++.+|+.+.+           
T Consensus       366 ~~~~~~k~vlItGas~giG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~  444 (657)
T PRK07201        366 RGPLVGKVVLITGASSGIGRATAIKVAEAGAT-VFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILA  444 (657)
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            34567899999999999999999999999998 9999886543222222211 1246888999999877           


Q ss_pred             -cCCcCEEEEccCCCCccc---c---ccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASPIF---Y---KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~---~---~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                       +.++|++||+||......   .   .++.+..+++|+.++..+++++    ++.+. +||++||...+..         
T Consensus       445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---------  515 (657)
T PRK07201        445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTN---------  515 (657)
T ss_pred             hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCC---------
Confidence             357999999999643211   1   1346778899999988887665    44555 9999999877652         


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                             ......|+.+|.+.+.+.+.++.+   .++++++++||.+..+.
T Consensus       516 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~  559 (657)
T PRK07201        516 -------APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPM  559 (657)
T ss_pred             -------CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccc
Confidence                   233457999999999999988765   48999999999998765

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.75  E-value=8.3e-17  Score=124.11  Aligned_cols=170  Identities=18%  Similarity=0.163  Sum_probs=123.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIYHL  104 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~vi~~  104 (259)
                      |+++||||+|+||.++++.|.++ ++ |+++.|+..                .+.+|+++.+        ..++|++||+
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~~-vi~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~id~lv~~   62 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-HE-VITAGRSSG----------------DVQVDITDPASIRALFEKVGKVDAVVSA   62 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-Cc-EEEEecCCC----------------ceEecCCChHHHHHHHHhcCCCCEEEEC
Confidence            58999999999999999999998 77 888887431                3567887766        4579999999


Q ss_pred             cCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh--CC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchH
Q 025022          105 ACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYD  177 (259)
Q Consensus       105 a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~  177 (259)
                      ||.....    ....++...+++|+.++.++++++.+.  +. +|+++||.....                +......|+
T Consensus        63 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~----------------~~~~~~~Y~  126 (199)
T PRK07578         63 AGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE----------------PIPGGASAA  126 (199)
T ss_pred             CCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC----------------CCCCchHHH
Confidence            9965331    123356677899999999999887653  22 899999865332                333446799


Q ss_pred             HHHHHHHHHHHHHHHH--hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHH
Q 025022          178 EGKRVAETLMFDYHRQ--HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSC  255 (259)
Q Consensus       178 ~sK~~~e~~~~~~~~~--~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  255 (259)
                      .+|.+.+.+.+.++.+  .++++..++||.+-.+..         ..      +..   +.    ...++..+|+|+++.
T Consensus       127 ~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~---------~~------~~~---~~----~~~~~~~~~~a~~~~  184 (199)
T PRK07578        127 TVNGALEGFVKAAALELPRGIRINVVSPTVLTESLE---------KY------GPF---FP----GFEPVPAARVALAYV  184 (199)
T ss_pred             HHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchh---------hh------hhc---CC----CCCCCCHHHHHHHHH
Confidence            9999999999988875  479999999987744320         00      000   01    013578899999887


Q ss_pred             hhh
Q 025022          256 FLA  258 (259)
Q Consensus       256 ~~l  258 (259)
                      +++
T Consensus       185 ~~~  187 (199)
T PRK07578        185 RSV  187 (199)
T ss_pred             HHh
Confidence            764

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.73  E-value=7.9e-17  Score=132.83  Aligned_cols=165  Identities=16%  Similarity=0.089  Sum_probs=120.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCcc--c--------cC-
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEP--L--------LI-   96 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~--~--------~~-   96 (259)
                      .++.++||||||+||.+++++|+++|++ |++++|+.+...+..++.   ....++..+.+|+.+.  +        .. 
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~-Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLN-LVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            4789999999999999999999999998 999998754433222221   1123567788888742  1        23 


Q ss_pred             -CcCEEEEccCCCCc------cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           97 -EVDQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        97 -~~d~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       ++|++||+||....      +...++.+..+++|+.++..+++++.    +.+. +||++||...+..+          
T Consensus       131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~----------  200 (320)
T PLN02780        131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP----------  200 (320)
T ss_pred             CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC----------
Confidence             46699999997532      11223456789999999999888764    3444 99999998654210          


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                          +......|+.+|.+.+.+.+.++.+.   |++++.+.||.+-.+.
T Consensus       201 ----~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~  245 (320)
T PLN02780        201 ----SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKM  245 (320)
T ss_pred             ----CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCc
Confidence                11234679999999999999988764   7999999999987753

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.73  E-value=1.1e-15  Score=121.43  Aligned_cols=161  Identities=16%  Similarity=0.165  Sum_probs=108.8

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCE
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQ  100 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~  100 (259)
                      .+..+++++++||||+|+||+++++.|+++|++ |+++.|+......   .... .....+.+|+++.+     +.++|+
T Consensus         8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~-Vi~~~r~~~~~~~---~~~~-~~~~~~~~D~~~~~~~~~~~~~iDi   82 (245)
T PRK12367          8 AQSTWQGKRIGITGASGALGKALTKAFRAKGAK-VIGLTHSKINNSE---SNDE-SPNEWIKWECGKEESLDKQLASLDV   82 (245)
T ss_pred             hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEECCchhhhh---hhcc-CCCeEEEeeCCCHHHHHHhcCCCCE
Confidence            345567899999999999999999999999998 8888876421111   1111 12256788998876     678999


Q ss_pred             EEEccCCCCcc-ccccChhHHHHHhhhhHHHHHHHHHHh--------CCeEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          101 IYHLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       101 vi~~a~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      +||+||..... ...++++..+++|+.++..+++++.+.        +..++..||.....                +. 
T Consensus        83 lVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~----------------~~-  145 (245)
T PRK12367         83 LILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ----------------PA-  145 (245)
T ss_pred             EEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC----------------CC-
Confidence            99999964321 223457788999999999999877432        22344444433221                11 


Q ss_pred             CCCchHHHHHHHHHHHHHHHH-------HhCCcEEEEEeccccCC
Q 025022          172 VRSCYDEGKRVAETLMFDYHR-------QHGIEIRIARIFNTYGP  209 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~-------~~~~~~~~lr~~~v~g~  209 (259)
                      ....|+.||++.+.+. .+++       ..++.+..+.|+.+..+
T Consensus       146 ~~~~Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~~t~  189 (245)
T PRK12367        146 LSPSYEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPFRSE  189 (245)
T ss_pred             CCchhHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCcccc
Confidence            2346999999975443 3322       24777888888766433

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.73  E-value=4.1e-16  Score=122.35  Aligned_cols=162  Identities=14%  Similarity=0.070  Sum_probs=124.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +.++..||||||++++|+.++.+++++|.. +++.+.+.....+..+...+...+....||+++.+            .+
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~-~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGAK-LVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCCe-EEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            356899999999999999999999999997 99999887776665555433346889999999988            57


Q ss_pred             CcCEEEEccCCCCcccc----ccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      .+|++||+||.......    .+..+..+++|+.+.....++.    .+.+. ++|-++|...+-               
T Consensus       114 ~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~---------------  178 (300)
T KOG1201|consen  114 DVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLF---------------  178 (300)
T ss_pred             CceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhccc---------------
Confidence            89999999998765332    2335667888888877666554    44444 999999986443               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH------hCCcEEEEEecccc
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ------HGIEIRIARIFNTY  207 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~------~~~~~~~lr~~~v~  207 (259)
                       .......|..||+++.-+.+.+..+      .+++.+.+.|+.+-
T Consensus       179 -g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~  223 (300)
T KOG1201|consen  179 -GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFIN  223 (300)
T ss_pred             -CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecc
Confidence             3344467999999998888887643      26889999887665

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.73  E-value=3.3e-16  Score=123.87  Aligned_cols=185  Identities=15%  Similarity=0.082  Sum_probs=125.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~vi~  103 (259)
                      |+++||||+|+||++++++|+++|.. .|+...|.....       ....++.++++|+++.+        ++++|++||
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~   73 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-------FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLIN   73 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-------cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEE
Confidence            68999999999999999999998643 255555533211       12347888999999876        568999999


Q ss_pred             ccCCCCccc----------cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022          104 LACPASPIF----------YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus       104 ~a~~~~~~~----------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +||......          ..+.....+.+|+.+...+++.+.+    .+. +++++||..  +...     +      .
T Consensus        74 ~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~~-----~------~  140 (235)
T PRK09009         74 CVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSIS-----D------N  140 (235)
T ss_pred             CCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--cccc-----c------C
Confidence            999764210          1122456788999988888777654    233 888888742  1100     0      0


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                      +..+...|+.+|++.+.+++.++.+     .++++..+.||.+..+....            .....         ....
T Consensus       141 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~------------~~~~~---------~~~~  199 (235)
T PRK09009        141 RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP------------FQQNV---------PKGK  199 (235)
T ss_pred             CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc------------hhhcc---------ccCC
Confidence            2233457999999999999998865     36888899998887764210            00000         1122


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      ++..+|+|+++++++
T Consensus       200 ~~~~~~~a~~~~~l~  214 (235)
T PRK09009        200 LFTPEYVAQCLLGII  214 (235)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            567899999888765

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.72  E-value=7.2e-17  Score=129.33  Aligned_cols=159  Identities=12%  Similarity=0.025  Sum_probs=114.6

Q ss_pred             EEEEEcCchhhhHHHHHHHHh----cCCCeEEEEcCCCCCCcchhhhcc---CCCceeEeecccCccc------------
Q 025022           34 RILVTGGAGFIGSHLVDKLME----NEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~----~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~------------   94 (259)
                      .++||||+++||.+++++|++    .|++ |+++.|+.....+..++..   ...++.++.+|+++.+            
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~   80 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSV-LVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALREL   80 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcE-EEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence            589999999999999999997    6888 8888886543322222211   1236788999999876            


Q ss_pred             cC----CcCEEEEccCCCCcc---c----cccChhHHHHHhhhhHHHHHHHHHH----h-C--CeEEEEecceeecCCCC
Q 025022           95 LI----EVDQIYHLACPASPI---F----YKYNPVKTIKTNVIGTLNMLGLAKR----V-G--ARILLTSTSEVYGDPLV  156 (259)
Q Consensus        95 ~~----~~d~vi~~a~~~~~~---~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-~--~~~i~~Ss~~~~~~~~~  156 (259)
                      .+    +.|++||+||.....   .    ..++.+..+++|+.++..+++.+.+    . +  .+||++||...+.    
T Consensus        81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~----  156 (256)
T TIGR01500        81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ----  156 (256)
T ss_pred             cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC----
Confidence            11    136999999964321   1    1234567899999998888766533    2 2  2899999976443    


Q ss_pred             CCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          157 HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       157 ~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                                  +......|+.+|.+.+.+.+.++.+   .+++++.+.||++-.+
T Consensus       157 ------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~  200 (256)
T TIGR01500       157 ------------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTD  200 (256)
T ss_pred             ------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccch
Confidence                        3334467999999999999998766   4789999999888664

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.72  E-value=1.7e-16  Score=130.73  Aligned_cols=176  Identities=14%  Similarity=0.115  Sum_probs=120.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++||||+++||.++++.|+++| +. |+++.|+.....+..+... ....+..+.+|+++.+            ..+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~-V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   81 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWH-VIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP   81 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            6799999999999999999999999 87 8888886443222222211 1235778899999887            357


Q ss_pred             cCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHH----HhC---CeEEEEecceeecCCCC----CCCCC
Q 025022           98 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG---ARILLTSTSEVYGDPLV----HPQDE  161 (259)
Q Consensus        98 ~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~---~~~i~~Ss~~~~~~~~~----~~~~e  161 (259)
                      +|++||+||.....     ...+..+..+++|+.++..+++++.    +.+   .+||++||...+.....    .+.+.
T Consensus        82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~  161 (314)
T TIGR01289        82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANL  161 (314)
T ss_pred             CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcccc
Confidence            99999999964321     1234567789999999888876653    332   39999999876532100    00000


Q ss_pred             CC-------c------CCCCCCCCCCchHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccC
Q 025022          162 SY-------W------GNVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYG  208 (259)
Q Consensus       162 ~~-------~------~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v~g  208 (259)
                      .+       +      ....+..+...|+.||.+...+.+.++++    .++.++.++||.+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~  225 (314)
T TIGR01289       162 GDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIAD  225 (314)
T ss_pred             cccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccC
Confidence            00       0      00113345567999999988888887764    369999999999853

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.72  E-value=2.2e-16  Score=123.81  Aligned_cols=159  Identities=18%  Similarity=0.138  Sum_probs=119.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------c--CCcCEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------L--IEVDQI  101 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~--~~~d~v  101 (259)
                      +++++||||+|+||++++++|+++|++ |++++|+..... .+..    .+++++.+|+++.+        .  .++|++
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~~-v~~~~r~~~~~~-~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~v   74 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGWR-VIATARDAAALA-ALQA----LGAEALALDVADPASVAGLAWKLDGEALDAA   74 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCCE-EEEEECCHHHHH-HHHh----ccceEEEecCCCHHHHHHHHHHhcCCCCCEE
Confidence            468999999999999999999999998 888888643221 2221    24678899999887        1  258999


Q ss_pred             EEccCCCCcc------ccccChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEecce-eecCCCCCCCCCCCcCCCCCC
Q 025022          102 YHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSE-VYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       102 i~~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~-~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ||++|.....      ....+++..+++|+.++..+++++.+.    +.+++++||.. .++..              +.
T Consensus        75 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------~~  140 (222)
T PRK06953         75 VYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDA--------------TG  140 (222)
T ss_pred             EECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccc--------------cC
Confidence            9999975321      133456789999999999999888642    22789998864 34321              11


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCC
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQH-GIEIRIARIFNTYGPR  210 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~lr~~~v~g~~  210 (259)
                      .+...|+.+|...+.+++.++.+. +++++.++|+++..+.
T Consensus       141 ~~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~  181 (222)
T PRK06953        141 TTGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDM  181 (222)
T ss_pred             CCccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCC
Confidence            222369999999999999887665 7899999999988765

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.72  E-value=2.4e-16  Score=123.70  Aligned_cols=152  Identities=16%  Similarity=0.170  Sum_probs=114.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---------cCCcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------LIEVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---------~~~~d~vi~  103 (259)
                      |+++||||+|+||+++++.|+++|++ |+++.|+.+...+..+.    .++.++.+|+++.+         ..++|++||
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~~-v~~~~r~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~   75 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGHK-VTLVGARRDDLEVAAKE----LDVDAIVCDNTDPASLEEARGLFPHHLDTIVN   75 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHh----ccCcEEecCCCCHHHHHHHHHHHhhcCcEEEE
Confidence            57999999999999999999999998 88888754322111111    24678889999877         136899999


Q ss_pred             ccCCCCc-------cc--cccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          104 LACPASP-------IF--YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       104 ~a~~~~~-------~~--~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      +||....       ..  ..++++..+++|+.++..+++++.+.   +.+||++||..  .                  .
T Consensus        76 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~--~------------------~  135 (223)
T PRK05884         76 VPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN--P------------------P  135 (223)
T ss_pred             CCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC--C------------------C
Confidence            9984211       00  13456788999999999999988652   23899999854  0                  1


Q ss_pred             CCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                      ....|+.+|++.+.+.+.++.+   ++++++.+.||.+..+
T Consensus       136 ~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~  176 (223)
T PRK05884        136 AGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQP  176 (223)
T ss_pred             CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCch
Confidence            1256999999999999998875   4799999999888654

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.71  E-value=2.6e-16  Score=123.67  Aligned_cols=161  Identities=16%  Similarity=0.130  Sum_probs=117.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQI  101 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~v  101 (259)
                      +++++||||+|+||+++++.|+++|++ |++++|+..... .+..   ..++.+..+|+.+.+          ..++|+|
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~~-V~~~~r~~~~~~-~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~v   75 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGWQ-VTATVRGPQQDT-ALQA---LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLL   75 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCCE-EEEEeCCCcchH-HHHh---ccccceEEcCCCCHHHHHHHHHHhhcCCCCEE
Confidence            368999999999999999999999998 999998754432 2222   236778889998876          2369999


Q ss_pred             EEccCCCCcc------ccccChhHHHHHhhhhHHHHHHHHHHh---C-CeEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          102 YHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKRV---G-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       102 i~~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~-~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      ||+||.....      ....+....+.+|+.++..+++++.+.   + ..++++||..  +....           .+..
T Consensus        76 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~~~-----------~~~~  142 (225)
T PRK08177         76 FVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSVEL-----------PDGG  142 (225)
T ss_pred             EEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccccc-----------CCCC
Confidence            9999875321      112345567788999998888877543   2 3788888753  21100           0222


Q ss_pred             CCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      ....|+.+|.+.+.+++.++.+   .++++..++||.+-.+.
T Consensus       143 ~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~  184 (225)
T PRK08177        143 EMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM  184 (225)
T ss_pred             CccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence            3456999999999999998765   36899999999987664

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.71  E-value=3.1e-16  Score=114.81  Aligned_cols=197  Identities=16%  Similarity=0.095  Sum_probs=141.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      +.+.++||||+..||+++++.|.+.|++ |.+.+++.....+....+-......-+.||+.+..            +..+
T Consensus        13 ~sk~~~vtGg~sGIGrAia~~la~~Gar-v~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~p   91 (256)
T KOG1200|consen   13 MSKVAAVTGGSSGIGRAIAQLLAKKGAR-VAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTP   91 (256)
T ss_pred             hcceeEEecCCchHHHHHHHHHHhcCcE-EEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCC
Confidence            3578999999999999999999999999 88888766544444444333345667899998877            6789


Q ss_pred             CEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh------CC-eEEEEecce-eecCCCCCCCCCCCcCC
Q 025022           99 DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV------GA-RILLTSTSE-VYGDPLVHPQDESYWGN  166 (259)
Q Consensus        99 d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~-~~i~~Ss~~-~~~~~~~~~~~e~~~~~  166 (259)
                      ++++||||...+.    -..+++++.+.+|+.+.+.+.+++.+.      .. .||.+||+- -.|.             
T Consensus        92 svlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN-------------  158 (256)
T KOG1200|consen   92 SVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGN-------------  158 (256)
T ss_pred             cEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccc-------------
Confidence            9999999987652    234678899999999999998877543      12 899999973 2332             


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHH---HhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHR---QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~---~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                          .....|+++|.-.--+.+..++   .++|++..+.||.+-.|..    ..+.+...+.+...-|+..+|       
T Consensus       159 ----~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT----~~mp~~v~~ki~~~iPmgr~G-------  223 (256)
T KOG1200|consen  159 ----FGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMT----EAMPPKVLDKILGMIPMGRLG-------  223 (256)
T ss_pred             ----ccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhh----hhcCHHHHHHHHccCCccccC-------
Confidence                1124477776554333333333   3589999999999988763    224466777777766655544       


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                        ..+|+|..++++.
T Consensus       224 --~~EevA~~V~fLA  236 (256)
T KOG1200|consen  224 --EAEEVANLVLFLA  236 (256)
T ss_pred             --CHHHHHHHHHHHh
Confidence              5689998888875

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.70  E-value=1.5e-15  Score=121.51  Aligned_cols=207  Identities=16%  Similarity=0.123  Sum_probs=140.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc----CCCceeEeecccCccc----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~dl~~~~----------   94 (259)
                      .+.+|+++||||+..||++++++|.+.|.+ |++.+|+.+...+......    ...++..+.+|+.+.+          
T Consensus         5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~-v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~   83 (270)
T KOG0725|consen    5 RLAGKVALVTGGSSGIGKAIALLLAKAGAK-VVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV   83 (270)
T ss_pred             cCCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence            467899999999999999999999999999 9999987654333332221    1245888999998765          


Q ss_pred             ---cCCcCEEEEccCCCCcc-----ccccChhHHHHHhhhh-HHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIG-TLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~-~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                         ++++|++||+||.....     ...+.++..+++|+.+ ...+..++.    +.+. .++++||...+..       
T Consensus        84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~-------  156 (270)
T KOG0725|consen   84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGP-------  156 (270)
T ss_pred             HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccC-------
Confidence               47899999999976532     2345678899999995 555555553    3233 8888888764432       


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEec
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID-DGRVVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  236 (259)
                              ...+...|+.+|.+.+++.+.++.+   +++++..+-||.+..+..... .......+..........+   
T Consensus       157 --------~~~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~p---  225 (270)
T KOG0725|consen  157 --------GPGSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVP---  225 (270)
T ss_pred             --------CCCCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccccc---
Confidence                    1122267999999999999999875   489999999998888751100 0001112222111111111   


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          .-.+...+|+++++.+++
T Consensus       226 ----~gr~g~~~eva~~~~fla  243 (270)
T KOG0725|consen  226 ----LGRVGTPEEVAEAAAFLA  243 (270)
T ss_pred             ----cCCccCHHHHHHhHHhhc
Confidence                123557799999888775

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=99.70  E-value=2.7e-16  Score=124.22  Aligned_cols=182  Identities=21%  Similarity=0.243  Sum_probs=121.4

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccCCCceeEeecccCccc-----cCCcCEEEEccCCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPA  108 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~~~  108 (259)
                      |+|+||||.+|+++++.|++.+++ |.++.|+.+.. .+.++    ..+++++.+|+.+.+     +.++|.||++.+..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~R~~~~~~~~~l~----~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFS-VRALVRDPSSDRAQQLQ----ALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGC-EEEEESSSHHHHHHHHH----HTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCC-cEEEEeccchhhhhhhh----cccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            799999999999999999999999 99999975321 12222    247788999999887     88999999988754


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHH
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLM  187 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~  187 (259)
                      .            ........+++++|++.|+ +||+.|....+..        ..     ...|...+...|...|+.+
T Consensus        76 ~------------~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~--------~~-----~~~p~~~~~~~k~~ie~~l  130 (233)
T PF05368_consen   76 H------------PSELEQQKNLIDAAKAAGVKHFVPSSFGADYDE--------SS-----GSEPEIPHFDQKAEIEEYL  130 (233)
T ss_dssp             C------------CCHHHHHHHHHHHHHHHT-SEEEESEESSGTTT--------TT-----TSTTHHHHHHHHHHHHHHH
T ss_pred             h------------hhhhhhhhhHHHhhhccccceEEEEEecccccc--------cc-----cccccchhhhhhhhhhhhh
Confidence            2            1235566789999999999 8875443332211        00     1222234555677777766


Q ss_pred             HHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHH-HHcC--CCeEEecCCceeeeee-eHHHHHHHHHhhh
Q 025022          188 FDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQ-AIRG--EPLTVQAPGTQTRSFC-YVSDMVCKSCFLA  258 (259)
Q Consensus       188 ~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i-~v~D~a~~~~~~l  258 (259)
                          ++.+++++++|++..+....        ..+... ....  ..+.+.++++....++ +.+|+++++..++
T Consensus       131 ----~~~~i~~t~i~~g~f~e~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il  193 (233)
T PF05368_consen  131 ----RESGIPYTIIRPGFFMENLL--------PPFAPVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAIL  193 (233)
T ss_dssp             ----HHCTSEBEEEEE-EEHHHHH--------TTTHHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHH
T ss_pred             ----hhccccceeccccchhhhhh--------hhhcccccccccceEEEEccCCCccccccccHHHHHHHHHHHH
Confidence                55589999999988765321        111111 1112  1356777777667775 9999999988765

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.70  E-value=1.1e-15  Score=132.07  Aligned_cols=160  Identities=18%  Similarity=0.104  Sum_probs=118.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||.++++.|.++|++ |++++++...  +.+.......+...+.+|+++.+            ..+
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~Ga~-vi~~~~~~~~--~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  284 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARDGAH-VVCLDVPAAG--EALAAVANRVGGTALALDITAPDAPARIAEHLAERHGG  284 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCccH--HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCC
Confidence            46789999999999999999999999998 8888774221  22222111124467889998876            347


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----C-CeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|+|||+||.....    .....++..+++|+.++.++.+++...    . .+||++||...+.                
T Consensus       285 id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~----------------  348 (450)
T PRK08261        285 LDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIA----------------  348 (450)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC----------------
Confidence            99999999976431    123456778899999999999988663    2 2899999976443                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYG  208 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g  208 (259)
                      +......|+.+|...+.+++.++.+   .+++++.+.||.+-.
T Consensus       349 g~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t  391 (450)
T PRK08261        349 GNRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIET  391 (450)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcc
Confidence            1123357999999999888887654   479999999988754

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.70  E-value=7.9e-16  Score=126.14  Aligned_cols=166  Identities=11%  Similarity=0.001  Sum_probs=116.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC---------cchhhhccC--CCceeEeecccCccc----
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---------KDNLRKWIG--HPRFELIRHDVTEPL----   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~---------~~~~~~~~~--~~~~~~~~~dl~~~~----   94 (259)
                      +++|+++||||++.||.++++.|++.|++ |+++.|+....         .+...+.+.  ..++..+.+|+++++    
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~   84 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAAGAT-VYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA   84 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence            66899999999999999999999999998 88888864211         111111111  134678899999987    


Q ss_pred             --------cCCcCEEEEcc-CCCC-----ccc---cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeec
Q 025022           95 --------LIEVDQIYHLA-CPAS-----PIF---YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (259)
Q Consensus        95 --------~~~~d~vi~~a-~~~~-----~~~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~  152 (259)
                              ++++|++||+| |...     ...   ...+....+++|+.++..+++++.+    .+. +||++||.....
T Consensus        85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~  164 (305)
T PRK08303         85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEY  164 (305)
T ss_pred             HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccc
Confidence                    46899999999 6321     111   1233556788899988888776643    333 999999864321


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 025022          153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP  209 (259)
Q Consensus       153 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~  209 (259)
                      ...             +......|+.+|.+...+.+.++.+.   ++++..|.||.+-.+
T Consensus       165 ~~~-------------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~  211 (305)
T PRK08303        165 NAT-------------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE  211 (305)
T ss_pred             cCc-------------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence            100             11223569999999999999888764   699999999877554

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.70  E-value=2.4e-16  Score=118.02  Aligned_cols=145  Identities=17%  Similarity=0.182  Sum_probs=112.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC--CCCCcchhhhcc-CCCceeEeecccCccc------------cCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY--FTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~--~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      |+++||||++.||.+++++|+++|...|+++.|+  .+...+...+.. ...++.++++|+++.+            ...
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5799999999999999999999977658888886  121222211111 2368899999999987            468


Q ss_pred             cCEEEEccCCCCcccc----ccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCC
Q 025022           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV  172 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~  172 (259)
                      +|++||++|.......    .++.+..+++|+.+...+.+++...+. +||++||.....                +...
T Consensus        81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------~~~~  144 (167)
T PF00106_consen   81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVR----------------GSPG  144 (167)
T ss_dssp             ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTS----------------SSTT
T ss_pred             ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhcc----------------CCCC
Confidence            9999999997764222    244668899999999999999888555 999999986543                4445


Q ss_pred             CCchHHHHHHHHHHHHHHHHH
Q 025022          173 RSCYDEGKRVAETLMFDYHRQ  193 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~  193 (259)
                      ...|..+|.+.+.+++.++.+
T Consensus       145 ~~~Y~askaal~~~~~~la~e  165 (167)
T PF00106_consen  145 MSAYSASKAALRGLTQSLAAE  165 (167)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHh
Confidence            578999999999999998875

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK05599 hypothetical protein; Provisional

Probab=99.69  E-value=7.8e-16  Score=122.60  Aligned_cols=159  Identities=14%  Similarity=0.104  Sum_probs=113.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------cCCc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      |+++||||++.||.+++++|. +|++ |+++.|+.+...+..++...  ...+.++.+|+.+.+            .+++
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~-Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGED-VVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCE-EEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence            689999999999999999998 5887 88888865433322222211  124778999999987            4679


Q ss_pred             CEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHH----HHHhC--CeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGL----AKRVG--ARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        99 d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~----~~~~~--~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      |++||+||......    ......+.+++|+.+...+++.    +.+.+  .+||++||...+.                
T Consensus        79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~----------------  142 (246)
T PRK05599         79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR----------------  142 (246)
T ss_pred             CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc----------------
Confidence            99999999754311    1122345566777777655443    44443  3999999975432                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                      +......|+.+|.+.+.+.+.++.+   .+++++.+.||.+..+
T Consensus       143 ~~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~  186 (246)
T PRK05599        143 ARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGS  186 (246)
T ss_pred             CCcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccch
Confidence            2223457999999999999998876   4789999999988765

>PRK06484 short chain dehydrogenase; Validated

Probab=99.69  E-value=5.7e-16  Score=136.37  Aligned_cols=161  Identities=18%  Similarity=0.200  Sum_probs=122.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      ++++++||||+++||.++++.|+++|++ |+++.|+.....+..++.  ..++.++.+|+++.+            +.++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQ-VVVADRNVERARERADSL--GPDHHALAMDVSDEAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh--CCceeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999998 888888644333222222  235677899999877            4679


Q ss_pred             CEEEEccCCCCc------cccccChhHHHHHhhhhHHHHHHHHHHh----C-C-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           99 DQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        99 d~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      |++||+||....      +....+++..+++|+.++..+++++.+.    + . +||++||.....              
T Consensus        81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~--------------  146 (520)
T PRK06484         81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV--------------  146 (520)
T ss_pred             CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCC--------------
Confidence            999999986321      1223456789999999999998877542    2 3 899999976443              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                        +......|+.+|.+.+.+.+.++.+   .+++++.+.|+.+..+.
T Consensus       147 --~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~  191 (520)
T PRK06484        147 --ALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQM  191 (520)
T ss_pred             --CCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchh
Confidence              2223467999999999999988776   47999999999886654

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.69  E-value=1.6e-15  Score=119.27  Aligned_cols=161  Identities=7%  Similarity=0.002  Sum_probs=115.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||++.||.++++.|+++|++ |+++.|+.+...+..++... ..++..+.+|+.+.+            +.
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFN   81 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            56789999999999999999999999998 88888865433222222111 235667889998877            45


Q ss_pred             -CcCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHH----HHhC-C-eEEEEecceeecCCCCCCCCCCCc
Q 025022           97 -EVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVG-A-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        97 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       ++|++||+||.....     ...++..+.+++|+.++..+++.+    ++.+ . .||++||...+             
T Consensus        82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-------------  148 (227)
T PRK08862         82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH-------------  148 (227)
T ss_pred             CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-------------
Confidence             799999999743221     112234556677887777665543    3333 3 89999985321             


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                            .....|+.+|.+.+.+.+.++.+   +++++..+.||.+-.+.
T Consensus       149 ------~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~~  191 (227)
T PRK08862        149 ------QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSANG  191 (227)
T ss_pred             ------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCC
Confidence                  12356999999999999998875   47999999999887763

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.68  E-value=2.4e-15  Score=113.43  Aligned_cols=158  Identities=15%  Similarity=0.098  Sum_probs=114.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchh---hhcc-CCCceeEeecccCccc------------cC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---RKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~---~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ++++|+||+|+||.+++++|+++|...|+++.|+........   +... ...++.++.+|+.+++            ..
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG   80 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            479999999999999999999999754777777644332211   1111 1246778899998865            34


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      .+|.+||++|.....    ....+++..+++|+.++..+++++++.+. ++|++||.....                +..
T Consensus        81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~----------------~~~  144 (180)
T smart00822       81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVL----------------GNP  144 (180)
T ss_pred             CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhc----------------CCC
Confidence            579999999865321    12244677889999999999999987776 899999875432                112


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhCCcEEEEEecccc
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTY  207 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~  207 (259)
                      ....|+.+|...+.+++.+ ...+++++.+.|+.+-
T Consensus       145 ~~~~y~~sk~~~~~~~~~~-~~~~~~~~~~~~g~~~  179 (180)
T smart00822      145 GQANYAAANAFLDALAAHR-RARGLPATSINWGAWA  179 (180)
T ss_pred             CchhhHHHHHHHHHHHHHH-HhcCCceEEEeecccc
Confidence            3356999999999998665 4568888888876553

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.68  E-value=3.5e-15  Score=125.54  Aligned_cols=157  Identities=15%  Similarity=0.087  Sum_probs=105.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~  103 (259)
                      .+++|+++||||+|+||++++++|.++|++ |++++|+...........  ...+..+.+|+++.+     ++++|++||
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~-Vi~l~r~~~~l~~~~~~~--~~~v~~v~~Dvsd~~~v~~~l~~IDiLIn  251 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAK-VVALTSNSDKITLEINGE--DLPVKTLHWQVGQEAALAELLEKVDILII  251 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHhhc--CCCeEEEEeeCCCHHHHHHHhCCCCEEEE
Confidence            356789999999999999999999999998 888887543222111111  124667889998877     678999999


Q ss_pred             ccCCCCc-cccccChhHHHHHhhhhHHHHHHHHHH----hC----C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCC
Q 025022          104 LACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKR----VG----A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR  173 (259)
Q Consensus       104 ~a~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~----~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~  173 (259)
                      +||.... +...++.+..+++|+.++.++++++.+    .+    . .+|.+|+.. ..                + ...
T Consensus       252 nAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~-~~----------------~-~~~  313 (406)
T PRK07424        252 NHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAE-VN----------------P-AFS  313 (406)
T ss_pred             CCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcccc-cc----------------C-CCc
Confidence            9986532 122334678899999999999988743    22    1 345554321 11                1 112


Q ss_pred             CchHHHHHHHHHHHHHHHHHhCCcEEEEEeccc
Q 025022          174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT  206 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v  206 (259)
                      ..|+.||.+.+.+..-...+.++.+..+.|+.+
T Consensus       314 ~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~  346 (406)
T PRK07424        314 PLYELSKRALGDLVTLRRLDAPCVVRKLILGPF  346 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCceEEEEeCCC
Confidence            459999999988764333334555555555443

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=1.7e-15  Score=123.13  Aligned_cols=179  Identities=19%  Similarity=0.141  Sum_probs=131.8

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcch---hhhccCCCceeEeecccCccc---------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LRKWIGHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~~dl~~~~---------   94 (259)
                      ..++.+++++|||||..||.+++++|..+|.. |+...|+.....+.   +........+.++++|+.+..         
T Consensus        30 ~~~~~~~~~vVTGansGIG~eta~~La~~Ga~-Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~  108 (314)
T KOG1208|consen   30 GIDLSGKVALVTGATSGIGFETARELALRGAH-VVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEF  108 (314)
T ss_pred             cccCCCcEEEEECCCCchHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHH
Confidence            44567799999999999999999999999988 99999976433322   222233567888999999988         


Q ss_pred             ---cCCcCEEEEccCCCCccc--cccChhHHHHHhhhhHHHHHHHH----HHhC-CeEEEEecceeecC--CCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYGD--PLVHPQDES  162 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~~Ss~~~~~~--~~~~~~~e~  162 (259)
                         ....|++||+||.+....  ..+..+..+.+|..+++.+.+.+    ++.. .|||++||..- +.  ..+....|.
T Consensus       109 ~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~~~l~~~~  187 (314)
T KOG1208|consen  109 KKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDLKDLSGEK  187 (314)
T ss_pred             HhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccchhhccchh
Confidence               567999999999887643  33567899999999988887765    4444 39999999764 11  111111111


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCC
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRM  211 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~  211 (259)
                      .    ........|+.||.+......+++++.  |+.+..+.||.+..++.
T Consensus       188 ~----~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l  234 (314)
T KOG1208|consen  188 A----KLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGL  234 (314)
T ss_pred             c----cCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccce
Confidence            0    002222359999999999999988776  59999999999988753

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=99.67  E-value=1.1e-14  Score=105.84  Aligned_cols=189  Identities=13%  Similarity=0.095  Sum_probs=133.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~~  107 (259)
                      |||.|+||||.+|+.|+++..++|+. |+++.|++.+....       .++...+.|+.|..     +.+.|+||..-+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHe-VTAivRn~~K~~~~-------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~   72 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHE-VTAIVRNASKLAAR-------QGVTILQKDIFDLTSLASDLAGHDAVISAFGA   72 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCe-eEEEEeChHhcccc-------ccceeecccccChhhhHhhhcCCceEEEeccC
Confidence            79999999999999999999999999 99999976654422       36778888888876     7899999997765


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecce-eecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE-VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~-~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      ...     +.+..   .......+++..+..++ |++.++..+ .|-++. ..+      -..|..|...|...+..+|.
T Consensus        73 ~~~-----~~~~~---~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g-~rL------vD~p~fP~ey~~~A~~~ae~  137 (211)
T COG2910          73 GAS-----DNDEL---HSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEG-TRL------VDTPDFPAEYKPEALAQAEF  137 (211)
T ss_pred             CCC-----ChhHH---HHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCC-cee------ecCCCCchhHHHHHHHHHHH
Confidence            421     22221   23346678888888898 999988874 343322 111      11266677778888888775


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~  257 (259)
                      + +.+..+..++|+.+-|...+-|++....          ..-++...+.+.  .--++|+..|.|-+++.-
T Consensus       138 L-~~Lr~~~~l~WTfvSPaa~f~PGerTg~----------yrlggD~ll~n~--~G~SrIS~aDYAiA~lDe  196 (211)
T COG2910         138 L-DSLRAEKSLDWTFVSPAAFFEPGERTGN----------YRLGGDQLLVNA--KGESRISYADYAIAVLDE  196 (211)
T ss_pred             H-HHHhhccCcceEEeCcHHhcCCccccCc----------eEeccceEEEcC--CCceeeeHHHHHHHHHHH
Confidence            4 5665566799999999999999865332          122333333322  234789999999998754

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.65  E-value=3.6e-16  Score=124.18  Aligned_cols=192  Identities=21%  Similarity=0.196  Sum_probs=136.4

Q ss_pred             cCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c-CCcCEEEE
Q 025022           39 GGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L-IEVDQIYH  103 (259)
Q Consensus        39 Gat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~-~~~d~vi~  103 (259)
                      |++  +.||.++++.|+++|++ |++.+|+.....+.++++....+.+.+.+|+++++            + .++|++||
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~-V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~   79 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGAN-VILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVN   79 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEE-EEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEe
Confidence            566  99999999999999999 99999976543333333332223457999999887            5 88999999


Q ss_pred             ccCCCCc----cc----cccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcCCCCCCCC
Q 025022          104 LACPASP----IF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV  172 (259)
Q Consensus       104 ~a~~~~~----~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~  172 (259)
                      +++....    ..    ..+++...+++|+.++..+++++.+.   +..+|++||.....                +...
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~----------------~~~~  143 (241)
T PF13561_consen   80 NAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR----------------PMPG  143 (241)
T ss_dssp             EEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS----------------BSTT
T ss_pred             cccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc----------------cCcc
Confidence            9987653    11    22456788899999999999888553   22899999875433                3334


Q ss_pred             CCchHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHH
Q 025022          173 RSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS  248 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  248 (259)
                      ...|+.+|.+.+.+.+.++.+    +||++..|.||.+..+....  ......+........++..         +...+
T Consensus       144 ~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~--~~~~~~~~~~~~~~~pl~r---------~~~~~  212 (241)
T PF13561_consen  144 YSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTER--IPGNEEFLEELKKRIPLGR---------LGTPE  212 (241)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHH--HHTHHHHHHHHHHHSTTSS---------HBEHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhc--cccccchhhhhhhhhccCC---------CcCHH
Confidence            458999999999999998754    57999999998888653110  0012334444444443222         44889


Q ss_pred             HHHHHHHhhh
Q 025022          249 DMVCKSCFLA  258 (259)
Q Consensus       249 D~a~~~~~~l  258 (259)
                      |+|+++++|+
T Consensus       213 evA~~v~fL~  222 (241)
T PF13561_consen  213 EVANAVLFLA  222 (241)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999886

...

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.65  E-value=1.7e-14  Score=117.52  Aligned_cols=201  Identities=13%  Similarity=0.079  Sum_probs=128.5

Q ss_pred             ccCCCEEEEEcC--chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcch---hh--------hccC---CCceeEeecccC-
Q 025022           29 FQSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LR--------KWIG---HPRFELIRHDVT-   91 (259)
Q Consensus        29 ~~~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~---~~--------~~~~---~~~~~~~~~dl~-   91 (259)
                      ++++|+++||||  +..||.++++.|.+.|.+ |++ .|........   ..        ....   ......+.+|+. 
T Consensus         6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~-Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~   83 (303)
T PLN02730          6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGAE-ILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF   83 (303)
T ss_pred             CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCE-EEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence            377999999999  799999999999999998 766 3322211100   00        0000   011345666762 


Q ss_pred             -------c------------c-c-----------cCCcCEEEEccCCCC----c--cccccChhHHHHHhhhhHHHHHHH
Q 025022           92 -------E------------P-L-----------LIEVDQIYHLACPAS----P--IFYKYNPVKTIKTNVIGTLNMLGL  134 (259)
Q Consensus        92 -------~------------~-~-----------~~~~d~vi~~a~~~~----~--~~~~~~~~~~~~~n~~~~~~l~~~  134 (259)
                             +            . +           +.++|++|||||...    +  +...++++..+++|+.++..++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~  163 (303)
T PLN02730         84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH  163 (303)
T ss_pred             CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence                   1            1 1           567999999996422    1  223356788999999999999888


Q ss_pred             HHHh---CCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCC-CchHHHHHHHHHHHHHHHHH----hCCcEEEEEeccc
Q 025022          135 AKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNT  206 (259)
Q Consensus       135 ~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v  206 (259)
                      +.+.   +.++|++||.....                +.... ..|+.+|.+.+.+.+.++.+    +++++..|.||.+
T Consensus       164 ~~p~m~~~G~II~isS~a~~~----------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v  227 (303)
T PLN02730        164 FGPIMNPGGASISLTYIASER----------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPL  227 (303)
T ss_pred             HHHHHhcCCEEEEEechhhcC----------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCc
Confidence            7553   23999999875332                11112 36999999999999999875    3689999999888


Q ss_pred             cCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          207 YGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       207 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      -.+..... . .............++         ..+...+|++.++++++
T Consensus       228 ~T~~~~~~-~-~~~~~~~~~~~~~pl---------~r~~~peevA~~~~fLa  268 (303)
T PLN02730        228 GSRAAKAI-G-FIDDMIEYSYANAPL---------QKELTADEVGNAAAFLA  268 (303)
T ss_pred             cCchhhcc-c-ccHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHh
Confidence            77542110 0 011111111111111         12457899999998875

>PLN00015 protochlorophyllide reductase

Probab=99.64  E-value=4.1e-15  Score=122.33  Aligned_cols=172  Identities=16%  Similarity=0.146  Sum_probs=115.3

Q ss_pred             EEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cCCcCEE
Q 025022           36 LVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIEVDQI  101 (259)
Q Consensus        36 lItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~~d~v  101 (259)
                      +||||+++||.+++++|+++| +. |++..|+.....+...... ...++.++.+|+.+.+            ..++|++
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l   79 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWH-VVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL   79 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            599999999999999999999 87 8888876433222222211 1235778899999877            3579999


Q ss_pred             EEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHH----HHhC--C-eEEEEecceeecCCC-C--CC---CC---
Q 025022          102 YHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVG--A-RILLTSTSEVYGDPL-V--HP---QD---  160 (259)
Q Consensus       102 i~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~--~-~~i~~Ss~~~~~~~~-~--~~---~~---  160 (259)
                      ||+||.....     ...++.+..+++|+.++..+++.+    ++.+  . +||++||...+.... .  .+   ..   
T Consensus        80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~  159 (308)
T PLN00015         80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR  159 (308)
T ss_pred             EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhh
Confidence            9999974321     123456788999999988886665    3343  3 999999986432100 0  00   00   


Q ss_pred             --------C--CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccC
Q 025022          161 --------E--SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYG  208 (259)
Q Consensus       161 --------e--~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v~g  208 (259)
                              +  ..+.......+...|+.||.+.+.+.+.++.+    .++.++.+.||++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~  221 (308)
T PLN00015        160 GLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIAT  221 (308)
T ss_pred             hhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccC
Confidence                    0  00000012234567999999988877777664    379999999999964

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.61  E-value=2.9e-15  Score=111.36  Aligned_cols=156  Identities=17%  Similarity=0.145  Sum_probs=120.2

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------------cC
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------------LI   96 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------------~~   96 (259)
                      ..++|+||| +.|.||.+|++++.++|+. |++..|+.+...+...    ..++...+.|+++++             .+
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~-V~AtaR~~e~M~~L~~----~~gl~~~kLDV~~~~~V~~v~~evr~~~~G   80 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYL-VYATARRLEPMAQLAI----QFGLKPYKLDVSKPEEVVTVSGEVRANPDG   80 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeE-EEEEccccchHhhHHH----hhCCeeEEeccCChHHHHHHHHHHhhCCCC
Confidence            457899997 6799999999999999999 9999986655443332    247888899999888             56


Q ss_pred             CcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           97 EVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        97 ~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +.|+++|+||..-.    +..-...+..+++|+.|..++.++..+    .+..||+++|...|-                
T Consensus        81 kld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v----------------  144 (289)
T KOG1209|consen   81 KLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV----------------  144 (289)
T ss_pred             ceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe----------------
Confidence            79999999995422    122234577889999998888887754    333999999998876                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEecccc
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTY  207 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~  207 (259)
                      |....+.|.+||++...+.+.++.+   .|++++.+-+|.|-
T Consensus       145 pfpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~  186 (289)
T KOG1209|consen  145 PFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVA  186 (289)
T ss_pred             ccchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEeccccee
Confidence            5555578999999999998877643   47888887777654

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.61  E-value=1e-14  Score=107.88  Aligned_cols=160  Identities=17%  Similarity=0.168  Sum_probs=122.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +.+-+||||||+.+||.+|+++|.+.|-+ |++..|+.....+..+.   .+.+....||+.|.+            ...
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~elgN~-VIi~gR~e~~L~e~~~~---~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~   78 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLELGNT-VIICGRNEERLAEAKAE---NPEIHTEVCDVADRDSRRELVEWLKKEYPN   78 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHhCCE-EEEecCcHHHHHHHHhc---CcchheeeecccchhhHHHHHHHHHhhCCc
Confidence            35679999999999999999999999998 99999965544433332   367888899998887            457


Q ss_pred             cCEEEEccCCCCccc------cccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           98 VDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .+++|||||......      ...+.++.+.+|..++..+..++.++    .. .+|.+||.-.+-              
T Consensus        79 lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafv--------------  144 (245)
T COG3967          79 LNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFV--------------  144 (245)
T ss_pred             hheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccC--------------
Confidence            899999999765411      12334667889999999988777543    33 899999987665              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                        |......|..+|++...+...++++   .++++.=+-|+.|-.+
T Consensus       145 --Pm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~  188 (245)
T COG3967         145 --PMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT  188 (245)
T ss_pred             --cccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence              4444456999999998887777654   3678888888888764

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.60  E-value=5.2e-14  Score=112.39  Aligned_cols=163  Identities=20%  Similarity=0.159  Sum_probs=119.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhcc-CC--CceeEeecccCc-cc----------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI-GH--PRFELIRHDVTE-PL----------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~-~~--~~~~~~~~dl~~-~~----------   94 (259)
                      +++++++||||++.||.++++.|+++|+. |+++.++.... .+...... ..  ..+.+..+|+++ .+          
T Consensus         3 ~~~~~ilITGas~GiG~aia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~   81 (251)
T COG1028           3 LSGKVALVTGASSGIGRAIARALAREGAR-VVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAE   81 (251)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCe-EEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999998 77777754431 11121111 01  256778899997 44          


Q ss_pred             --cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 --LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                        .+++|++||+||....     +...+..+..+++|+.+...+.+++.+.-.  +||++||.... .            
T Consensus        82 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~------------  148 (251)
T COG1028          82 EEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-G------------  148 (251)
T ss_pred             HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-C------------
Confidence              5679999999997532     222356788999999999888886554444  89999998644 2            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                         .......|+.||.+.+.+.+.++.+   +|+++..+.||.+-.+
T Consensus       149 ---~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~  192 (251)
T COG1028         149 ---GPPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP  192 (251)
T ss_pred             ---CCCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence               1111467999999999999988854   5799999999955543

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.56  E-value=3.3e-13  Score=109.13  Aligned_cols=181  Identities=19%  Similarity=0.166  Sum_probs=122.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~~  107 (259)
                      |+|+||||||++|++++++|+++|+. |.++.|+........      ..+++..+|+.+..     +.+.+.++++.+.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~-v~~~~r~~~~~~~~~------~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~   73 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHE-VRAAVRNPEAAAALA------GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL   73 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCE-EEEEEeCHHHHHhhc------CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence            68999999999999999999999998 999988655433222      48899999999988     7899999998864


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL  186 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~  186 (259)
                      .. .    +. ...........+..+.+. .+. +++++|......                  .....|..+|...|..
T Consensus        74 ~~-~----~~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~~------------------~~~~~~~~~~~~~e~~  128 (275)
T COG0702          74 LD-G----SD-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGADA------------------ASPSALARAKAAVEAA  128 (275)
T ss_pred             cc-c----cc-chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCCC------------------CCccHHHHHHHHHHHH
Confidence            32 1    11 122223333344444444 334 788877654221                  2235699999999999


Q ss_pred             HHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       187 ~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +    ...+++++++|+...|.....     ..  .......+.+....+  ....+++..+|+++++...+
T Consensus       129 l----~~sg~~~t~lr~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~--~~~~~~i~~~d~a~~~~~~l  187 (275)
T COG0702         129 L----RSSGIPYTTLRRAAFYLGAGA-----AF--IEAAEAAGLPVIPRG--IGRLSPIAVDDVAEALAAAL  187 (275)
T ss_pred             H----HhcCCCeEEEecCeeeeccch-----hH--HHHHHhhCCceecCC--CCceeeeEHHHHHHHHHHHh
Confidence            8    666899999997776654311     11  222233343333333  33789999999999887654

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.55  E-value=2.5e-15  Score=108.13  Aligned_cols=200  Identities=17%  Similarity=0.113  Sum_probs=141.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQ  100 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~  100 (259)
                      +..++.|++||+.-.||+.+++.|.+.|.. |+++.|++.......++.  ...+..+.+|+.+.+        ...+|.
T Consensus         4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~-ViAvaR~~a~L~sLV~e~--p~~I~Pi~~Dls~wea~~~~l~~v~pidg   80 (245)
T KOG1207|consen    4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQ-VIAVARNEANLLSLVKET--PSLIIPIVGDLSAWEALFKLLVPVFPIDG   80 (245)
T ss_pred             cccceEEEeecccccccHHHHHHHHhcCCE-EEEEecCHHHHHHHHhhC--CcceeeeEecccHHHHHHHhhcccCchhh
Confidence            457899999999999999999999999999 999999654443333332  234888999999866        346899


Q ss_pred             EEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHHH----hCC--eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          101 IYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       101 vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~--~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ++|+||....    ....++.+..+++|+.+..++.+...+    ..+  -|+.+||.+...                +.
T Consensus        81 LVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R----------------~~  144 (245)
T KOG1207|consen   81 LVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR----------------PL  144 (245)
T ss_pred             hhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc----------------cc
Confidence            9999996543    224467788899999999998887433    233  799999987544                55


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      ...+.|..+|.+.+.+.+.++.+.   +|++..+.|..++...... + +.=+.-...++..-|         ...|..+
T Consensus       145 ~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~d-n-WSDP~K~k~mL~riP---------l~rFaEV  213 (245)
T KOG1207|consen  145 DNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRD-N-WSDPDKKKKMLDRIP---------LKRFAEV  213 (245)
T ss_pred             CCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEeccccc-c-cCCchhccchhhhCc---------hhhhhHH
Confidence            666889999999999999988775   4888889998887532110 0 000110111111111         2236678


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      ++++.++++++
T Consensus       214 ~eVVnA~lfLL  224 (245)
T KOG1207|consen  214 DEVVNAVLFLL  224 (245)
T ss_pred             HHHHhhheeee
Confidence            88888887765

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.55  E-value=7.1e-13  Score=107.99  Aligned_cols=203  Identities=10%  Similarity=0.030  Sum_probs=124.1

Q ss_pred             cccCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCC-------CCCcchhhh---ccC---------------C
Q 025022           28 FFQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYF-------TGSKDNLRK---WIG---------------H   80 (259)
Q Consensus        28 ~~~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~-------~~~~~~~~~---~~~---------------~   80 (259)
                      .++.+|+++|||++  ..||+++++.|.++|++ |++.++.+       .........   ...               .
T Consensus         4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~-Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~   82 (299)
T PRK06300          4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGAT-ILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASF   82 (299)
T ss_pred             cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCE-EEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhc
Confidence            34678999999995  89999999999999999 77765321       000000000   000               0


Q ss_pred             CceeEeecccCc---------cc-----------cCCcCEEEEccCCCCc------cccccChhHHHHHhhhhHHHHHHH
Q 025022           81 PRFELIRHDVTE---------PL-----------LIEVDQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGL  134 (259)
Q Consensus        81 ~~~~~~~~dl~~---------~~-----------~~~~d~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~  134 (259)
                      ...+-+.+|+.+         .+           ++++|++||+||....      +...++++..+++|+.++.+++++
T Consensus        83 ~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a  162 (299)
T PRK06300         83 DTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSH  162 (299)
T ss_pred             CCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence            011122222222         11           5789999999975321      122345678899999999999988


Q ss_pred             HHHh---CCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCC-CchHHHHHHHHHHHHHHHHH----hCCcEEEEEeccc
Q 025022          135 AKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNT  206 (259)
Q Consensus       135 ~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v  206 (259)
                      +.+.   +.++|++||.....                +.... ..|+.+|.+.+.+.+.++.+    +|+++..|.||.+
T Consensus       163 ~~p~m~~~G~ii~iss~~~~~----------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v  226 (299)
T PRK06300        163 FGPIMNPGGSTISLTYLASMR----------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPL  226 (299)
T ss_pred             HHHHhhcCCeEEEEeehhhcC----------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCc
Confidence            7653   22889888865332                11112 26999999999999998865    3799999999988


Q ss_pred             cCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          207 YGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       207 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      -.+..... . .............++         ..+...+|++.++++++
T Consensus       227 ~T~~~~~~-~-~~~~~~~~~~~~~p~---------~r~~~peevA~~v~~L~  267 (299)
T PRK06300        227 ASRAGKAI-G-FIERMVDYYQDWAPL---------PEPMEAEQVGAAAAFLV  267 (299)
T ss_pred             cChhhhcc-c-ccHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHh
Confidence            76542100 0 001111111111111         12457899999988775

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.54  E-value=1.6e-13  Score=103.26  Aligned_cols=165  Identities=18%  Similarity=0.081  Sum_probs=116.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhc-cCCCceeEeecccCccc-------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEPL-------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~dl~~~~-------------   94 (259)
                      |+.+.|+||||+..||..|+++|++. |...++...|+.+...+.++.. ..+++++.++.|+++.+             
T Consensus         1 Mspksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iV   80 (249)
T KOG1611|consen    1 MSPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIV   80 (249)
T ss_pred             CCCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhc
Confidence            45677999999999999999999987 5553444445444433222222 23689999999998877             


Q ss_pred             -cCCcCEEEEccCCCCcccc-----ccChhHHHHHhhhhHHHHHHHHHH----h---------C--C-eEEEEecceee-
Q 025022           95 -LIEVDQIYHLACPASPIFY-----KYNPVKTIKTNVIGTLNMLGLAKR----V---------G--A-RILLTSTSEVY-  151 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~----~---------~--~-~~i~~Ss~~~~-  151 (259)
                       ..+++++|++||....-..     .......+++|..++..+.+++-.    .         .  . .||++||...- 
T Consensus        81 g~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~  160 (249)
T KOG1611|consen   81 GSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSI  160 (249)
T ss_pred             ccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeecccccc
Confidence             4679999999997653111     122567888999998888776521    1         1  1 68889886432 


Q ss_pred             cCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccC
Q 025022          152 GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYG  208 (259)
Q Consensus       152 ~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g  208 (259)
                      +.              ....+...|..||.+.-.+.+.++-+.   ++-++.+.||||-.
T Consensus       161 ~~--------------~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~T  206 (249)
T KOG1611|consen  161 GG--------------FRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQT  206 (249)
T ss_pred             CC--------------CCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEc
Confidence            11              144566789999999999998887553   57888899999854

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.54  E-value=3.1e-13  Score=106.81  Aligned_cols=161  Identities=19%  Similarity=0.144  Sum_probs=122.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------------~   95 (259)
                      .+.+.|+|||.-...|..++++|.++|+. |++-.-.+. -.+.+.....++++..+..|+++++              .
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~-V~Agcl~~~-gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~  104 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGFR-VFAGCLTEE-GAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGE  104 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCCE-EEEEeecCc-hHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccc
Confidence            45678999999999999999999999999 777663322 2334444444689999999999988              3


Q ss_pred             CCcCEEEEccCCCCc--c---ccccChhHHHHHhhhhHHHHHHHHH----HhCCeEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~--~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .+.=.||||||....  .   ...+++...+++|..|+.++..++.    +...|+|++||..---              
T Consensus       105 ~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~--------------  170 (322)
T KOG1610|consen  105 DGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRV--------------  170 (322)
T ss_pred             ccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCc--------------
Confidence            457789999995533  1   1225678899999999988887764    4445999999975211              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                        +.+...+|..||++.|.....++++   +|+.+.++-|| .+-.
T Consensus       171 --~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T  213 (322)
T KOG1610|consen  171 --ALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKT  213 (322)
T ss_pred             --cCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-cccc
Confidence              3345578999999999999888765   59999999999 4443

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.53  E-value=3.5e-14  Score=106.78  Aligned_cols=156  Identities=23%  Similarity=0.221  Sum_probs=116.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC--CcchhhhccCCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--SKDNLRKWIGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~dl~~~~------------~   95 (259)
                      ..++++++|||.|.||..++++|+++|.. +.++..+.+.  ....++...+...+.++++|+++..            +
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik-~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~f   81 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIK-VLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATF   81 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCch-heeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999 5555543332  2234555566778999999999866            7


Q ss_pred             CCcCEEEEccCCCCccccccChhHHHHHhhhhHHHH----HHHHHHh-CC---eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM----LGLAKRV-GA---RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l----~~~~~~~-~~---~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      +.+|++||.||...    +.+.+..+.+|+.+..+-    +.++.+. |.   -+|..||..-..               
T Consensus        82 g~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~---------------  142 (261)
T KOG4169|consen   82 GTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLD---------------  142 (261)
T ss_pred             CceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccC---------------
Confidence            88999999999865    556888899998875554    4444433 22   899999865332               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHH-----HHhCCcEEEEEeccc
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYH-----RQHGIEIRIARIFNT  206 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~-----~~~~~~~~~lr~~~v  206 (259)
                       |.+-...|++||+..--+.+.++     .+.|+++..++||.+
T Consensus       143 -P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t  185 (261)
T KOG4169|consen  143 -PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFT  185 (261)
T ss_pred             -ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcc
Confidence             55555679999998776666643     345899999988765

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.53  E-value=1.5e-13  Score=109.17  Aligned_cols=148  Identities=15%  Similarity=0.131  Sum_probs=107.1

Q ss_pred             HHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---------cCCcCEEEEccCCCCccccccChh
Q 025022           48 LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------LIEVDQIYHLACPASPIFYKYNPV  118 (259)
Q Consensus        48 l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---------~~~~d~vi~~a~~~~~~~~~~~~~  118 (259)
                      ++++|+++|++ |++++|+.....          ...++.+|+++.+         ..++|++||+||...    ..+.+
T Consensus         1 ~a~~l~~~G~~-Vv~~~r~~~~~~----------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~~~~   65 (241)
T PRK12428          1 TARLLRFLGAR-VIGVDRREPGMT----------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TAPVE   65 (241)
T ss_pred             ChHHHHhCCCE-EEEEeCCcchhh----------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CCCHH
Confidence            47889999998 888888643311          1346789998877         247999999999653    24578


Q ss_pred             HHHHHhhhhHHHHHHHHHHh--C-CeEEEEecceeecCCCCCCCCCCC-----------cCCCCCCCCCCchHHHHHHHH
Q 025022          119 KTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYGDPLVHPQDESY-----------WGNVNPIGVRSCYDEGKRVAE  184 (259)
Q Consensus       119 ~~~~~n~~~~~~l~~~~~~~--~-~~~i~~Ss~~~~~~~~~~~~~e~~-----------~~~~~~~~~~~~Y~~sK~~~e  184 (259)
                      ..+++|+.++..+++++.+.  . .+||++||...++.....+..|..           |....+......|+.+|.+.+
T Consensus        66 ~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~  145 (241)
T PRK12428         66 LVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALI  145 (241)
T ss_pred             HhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHH
Confidence            89999999999999998754  2 399999999877532211111100           000013445678999999999


Q ss_pred             HHHHHHH-H---HhCCcEEEEEeccccCCC
Q 025022          185 TLMFDYH-R---QHGIEIRIARIFNTYGPR  210 (259)
Q Consensus       185 ~~~~~~~-~---~~~~~~~~lr~~~v~g~~  210 (259)
                      .+.+.++ .   .+|++++.++||.+.++.
T Consensus       146 ~~~~~la~~e~~~~girvn~v~PG~v~T~~  175 (241)
T PRK12428        146 LWTMRQAQPWFGARGIRVNCVAPGPVFTPI  175 (241)
T ss_pred             HHHHHHHHHhhhccCeEEEEeecCCccCcc
Confidence            9998887 3   358999999999998875

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.47  E-value=1.5e-12  Score=98.72  Aligned_cols=154  Identities=19%  Similarity=0.207  Sum_probs=105.7

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC--Cc-chhhhcc-CCCceeEeecccCccc------------cCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--SK-DNLRKWI-GHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~-~~~~~~~-~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++||||+|.||..+++.|.+++...++++.|+...  .. ..++++. ...++.++.+|+++++            ...
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~   81 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP   81 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence            689999999999999999999998779999987321  11 2222222 1357899999999988            357


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecce-eecCCCCCCCCCCCcCCCCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE-VYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~-~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      ++.|||+||.....    ...+.....+...+.++.++.+++..... .+|.+||.. ++|.                 .
T Consensus        82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~-----------------~  144 (181)
T PF08659_consen   82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGG-----------------P  144 (181)
T ss_dssp             EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT------------------T
T ss_pred             cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccC-----------------c
Confidence            89999999976542    22334567788899999999999988777 889999985 4553                 2


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhCCcEEEEEecc
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN  205 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~  205 (259)
                      ....|.......+.+.+... ..+.++..+.-+.
T Consensus       145 gq~~YaaAN~~lda~a~~~~-~~g~~~~sI~wg~  177 (181)
T PF08659_consen  145 GQSAYAAANAFLDALARQRR-SRGLPAVSINWGA  177 (181)
T ss_dssp             TBHHHHHHHHHHHHHHHHHH-HTTSEEEEEEE-E
T ss_pred             chHhHHHHHHHHHHHHHHHH-hCCCCEEEEEccc
Confidence            23679999999998887664 4588888887654

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.45  E-value=1.4e-12  Score=102.90  Aligned_cols=162  Identities=20%  Similarity=0.165  Sum_probs=121.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC---CCceeEeecccCccc------------cCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~dl~~~~------------~~~   97 (259)
                      .+|+||||+..||.+++..+..+|+. |.++.|+.++..+..+.+..   ...+.+..+|+.+++            ...
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~-Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~  112 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGAD-VTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP  112 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCc-eEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence            68999999999999999999999999 99999976654443333221   233668899997777            356


Q ss_pred             cCEEEEccCCCCcccc----ccChhHHHHHhhhhHHHHHHHHHHh----C-C-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~----~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      +|.+|+|||...+...    ....+..+++|..++.++++++...    . . +|+.+||....-               
T Consensus       113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~---------------  177 (331)
T KOG1210|consen  113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAML---------------  177 (331)
T ss_pred             cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhc---------------
Confidence            8999999997765322    2346778899999999998876432    2 2 889999875432               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM  211 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~  211 (259)
                       +....+.|..+|.+...+.+...++   +++.++..-|+.+..|+.
T Consensus       178 -~i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGf  223 (331)
T KOG1210|consen  178 -GIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGF  223 (331)
T ss_pred             -CcccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcc
Confidence             4455577888888887777766654   478888888888888873

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=2.1e-12  Score=106.97  Aligned_cols=158  Identities=19%  Similarity=0.192  Sum_probs=102.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVD   99 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d   99 (259)
                      ++.++|+|+||||.+|+-+++.|+++|+. |.++.|+.....+.+.......+...+..+.....          .....
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~-vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~  155 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKRGFS-VRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVV  155 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHCCCe-eeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccccce
Confidence            34578999999999999999999999998 99999976655544442222334444444443333          11233


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCC---CCc
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV---RSC  175 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~---~~~  175 (259)
                      +++-++|-...   ..+...-..+...++++++++|+..|+ |++++||+..-....             ++..   ...
T Consensus       156 ~v~~~~ggrp~---~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~~~-------------~~~~~~~~~~  219 (411)
T KOG1203|consen  156 IVIKGAGGRPE---EEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKFNQ-------------PPNILLLNGL  219 (411)
T ss_pred             eEEecccCCCC---cccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcccCC-------------Cchhhhhhhh
Confidence            45555443221   112223345778999999999999999 999998875322100             1111   123


Q ss_pred             hHHHHHHHHHHHHHHHHHhCCcEEEEEeccccC
Q 025022          176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG  208 (259)
Q Consensus       176 Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g  208 (259)
                      +..+|..+|+++    ++.+++++++|++...-
T Consensus       220 ~~~~k~~~e~~~----~~Sgl~ytiIR~g~~~~  248 (411)
T KOG1203|consen  220 VLKAKLKAEKFL----QDSGLPYTIIRPGGLEQ  248 (411)
T ss_pred             hhHHHHhHHHHH----HhcCCCcEEEecccccc
Confidence            446666676665    67799999999987654

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=99.43  E-value=1.1e-12  Score=94.93  Aligned_cols=154  Identities=19%  Similarity=0.114  Sum_probs=111.1

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEE
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      .-|++|..+|+||||-.|+.+++++++.+ ++.|+++.|++.......      ..+.....|....+     ..++|+.
T Consensus        14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~------k~v~q~~vDf~Kl~~~a~~~qg~dV~   87 (238)
T KOG4039|consen   14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATD------KVVAQVEVDFSKLSQLATNEQGPDVL   87 (238)
T ss_pred             HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcccc------ceeeeEEechHHHHHHHhhhcCCceE
Confidence            34788999999999999999999999996 456888888754333221      13334444544433     6789999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      +++-|....   ....+..+.+.-.....+++++++.|+ +|+.+||..+-                  ++....|...|
T Consensus        88 FcaLgTTRg---kaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd------------------~sSrFlY~k~K  146 (238)
T KOG4039|consen   88 FCALGTTRG---KAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD------------------PSSRFLYMKMK  146 (238)
T ss_pred             EEeeccccc---ccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC------------------cccceeeeecc
Confidence            998886543   223444555666667789999999999 99999997532                  22334688999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRM  211 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~  211 (259)
                      ...|+-+..+--+   .++|+|||.+.|...
T Consensus       147 GEvE~~v~eL~F~---~~~i~RPG~ll~~R~  174 (238)
T KOG4039|consen  147 GEVERDVIELDFK---HIIILRPGPLLGERT  174 (238)
T ss_pred             chhhhhhhhcccc---EEEEecCcceecccc
Confidence            9999888655333   589999999998654

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.41  E-value=4.5e-12  Score=126.13  Aligned_cols=162  Identities=18%  Similarity=0.123  Sum_probs=121.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCC----------c----------------------------
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGS----------K----------------------------   71 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~----------~----------------------------   71 (259)
                      ++++++||||++.||..++++|+++ |++ |+++.|+....          .                            
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~-viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~ 2074 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAH-FILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVR 2074 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCE-EEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhccc
Confidence            4789999999999999999999998 576 88888872100          0                            


Q ss_pred             ---------chhhhcc-CCCceeEeecccCccc-----------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhh
Q 025022           72 ---------DNLRKWI-GHPRFELIRHDVTEPL-----------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVI  126 (259)
Q Consensus        72 ---------~~~~~~~-~~~~~~~~~~dl~~~~-----------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~  126 (259)
                               ..++.+. ....+.++.+|++|.+           ..++|.|||+||.....    ...++++..+++|+.
T Consensus      2075 ~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~ 2154 (2582)
T TIGR02813      2075 PVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVD 2154 (2582)
T ss_pred             ccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHH
Confidence                     0000000 0235788999999987           23699999999976432    234567889999999


Q ss_pred             hHHHHHHHHHHhCC-eEEEEeccee-ecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh-CCcEEEEEe
Q 025022          127 GTLNMLGLAKRVGA-RILLTSTSEV-YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRIARI  203 (259)
Q Consensus       127 ~~~~l~~~~~~~~~-~~i~~Ss~~~-~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~lr~  203 (259)
                      ++.++++++..... +||++||... ++.                 .....|+.+|...+.+.+.++.++ +++++.+.+
T Consensus      2155 G~~~Ll~al~~~~~~~IV~~SSvag~~G~-----------------~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~w 2217 (2582)
T TIGR02813      2155 GLLSLLAALNAENIKLLALFSSAAGFYGN-----------------TGQSDYAMSNDILNKAALQLKALNPSAKVMSFNW 2217 (2582)
T ss_pred             HHHHHHHHHHHhCCCeEEEEechhhcCCC-----------------CCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEEC
Confidence            99999999987765 8999999854 332                 223569999999999988887765 588899999


Q ss_pred             ccccCCC
Q 025022          204 FNTYGPR  210 (259)
Q Consensus       204 ~~v~g~~  210 (259)
                      |.+-++.
T Consensus      2218 G~wdtgm 2224 (2582)
T TIGR02813      2218 GPWDGGM 2224 (2582)
T ss_pred             CeecCCc
Confidence            8876644

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=99.39  E-value=5.2e-12  Score=95.20  Aligned_cols=194  Identities=19%  Similarity=0.183  Sum_probs=134.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~~  107 (259)
                      -++++.|+.||.|.++++...+.+++ |..+.++..+.  .+...  ...+.++.+|.....     +.++..++.+++-
T Consensus        53 e~tlvlggnpfsgs~vlk~A~~vv~s-vgilsen~~k~--~l~sw--~~~vswh~gnsfssn~~k~~l~g~t~v~e~~gg  127 (283)
T KOG4288|consen   53 EWTLVLGGNPFSGSEVLKNATNVVHS-VGILSENENKQ--TLSSW--PTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGG  127 (283)
T ss_pred             HHHhhhcCCCcchHHHHHHHHhhcee-eeEeecccCcc--hhhCC--CcccchhhccccccCcchhhhcCCcccHHHhcC
Confidence            46999999999999999999999999 88888764422  12221  236666766665544     6678888888864


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL  186 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~  186 (259)
                      ..      +...+...|-....+-++++++.|+ +|+|+|... |+-              .+..+ .+|..+|.++|..
T Consensus       128 fg------n~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~d-~~~--------------~~~i~-rGY~~gKR~AE~E  185 (283)
T KOG4288|consen  128 FG------NIILMDRINGTANINAVKAAAKAGVPRFVYISAHD-FGL--------------PPLIP-RGYIEGKREAEAE  185 (283)
T ss_pred             cc------chHHHHHhccHhhHHHHHHHHHcCCceEEEEEhhh-cCC--------------CCccc-hhhhccchHHHHH
Confidence            43      4566677888888889999999999 999999642 221              03333 3799999999988


Q ss_pred             HHHHHHHhCCcEEEEEeccccCCCCCCCCcc---HHHHHHHHHHcC-----CCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGR---VVSNFIAQAIRG-----EPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       187 ~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +...   ++.+-+++|||.+||...-.....   .+...+..+.+.     ..+++.+  ....+.+.+++||.+.+.++
T Consensus       186 ll~~---~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg--~l~~ppvnve~VA~aal~ai  260 (283)
T KOG4288|consen  186 LLKK---FRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLG--PLLAPPVNVESVALAALKAI  260 (283)
T ss_pred             HHHh---cCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccc--cccCCCcCHHHHHHHHHHhc
Confidence            7554   457889999999999742111111   122222333222     2345543  56789999999999988764

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=99.28  E-value=2e-11  Score=96.60  Aligned_cols=163  Identities=13%  Similarity=0.067  Sum_probs=118.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC--CceeEeecccCccc-----------cCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVTEPL-----------LIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~dl~~~~-----------~~~~   98 (259)
                      +.=..|||||..||++.+++|+++|.+ |+.+.|..++.....++..+.  ..+..+..|.++.+           ...+
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkrG~n-vvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~V  127 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKRGFN-VVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDV  127 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence            355899999999999999999999999 999999776654433333222  45778888888776           2357


Q ss_pred             CEEEEccCCCCcc--c----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           99 DQIYHLACPASPI--F----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        99 d~vi~~a~~~~~~--~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      .++|||+|.....  .    ........+.+|+.++..+.+...    +.+. .|+++||.+-..               
T Consensus       128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~---------------  192 (312)
T KOG1014|consen  128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLI---------------  192 (312)
T ss_pred             EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccc---------------
Confidence            7899999977621  1    111335567788888776666543    3344 899999976332               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM  211 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~  211 (259)
                       |.+....|+.+|...+.+.+.+.+++   |+.+-.+-|..|-++..
T Consensus       193 -p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~  238 (312)
T KOG1014|consen  193 -PTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMA  238 (312)
T ss_pred             -cChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecccc
Confidence             55556789999998888877776654   78888998888877553

>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism]

Probab=99.27  E-value=1.7e-11  Score=92.26  Aligned_cols=199  Identities=14%  Similarity=0.018  Sum_probs=126.6

Q ss_pred             CCEEEEEcCchhhhHHHHH-----HHHhcC----CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEE
Q 025022           32 NMRILVTGGAGFIGSHLVD-----KLMENE----KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIY  102 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~-----~L~~~g----~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi  102 (259)
                      ++..++-+++|+|+..|..     ++-+.+    |. |.++.|.+.+.           ++++...|..-. ...|+..+
T Consensus        12 sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~-vtv~sR~pg~~-----------ritw~el~~~Gi-p~sc~a~v   78 (315)
T KOG3019|consen   12 SRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHA-VTVLSRSPGKA-----------RITWPELDFPGI-PISCVAGV   78 (315)
T ss_pred             cccCCCCccccchhccccCcccccccCCCCcccccc-eEEEecCCCCc-----------ccccchhcCCCC-ceehHHHH
Confidence            4456777889999988776     333333    66 88988865443           333333333221 12566666


Q ss_pred             EccCCCCc---cccccC-hhHHHHHhhhhHHHHHHHHHHhCC---eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCc
Q 025022          103 HLACPASP---IFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSC  175 (259)
Q Consensus       103 ~~a~~~~~---~~~~~~-~~~~~~~n~~~~~~l~~~~~~~~~---~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~  175 (259)
                      +++|....   .++... ..+.....+..+..++++..++..   .+|.+|..++|.......++|++     +...+..
T Consensus        79 na~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~-----~~qgfd~  153 (315)
T KOG3019|consen   79 NAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKI-----VHQGFDI  153 (315)
T ss_pred             hhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccccccccccc-----ccCChHH
Confidence            66653321   111111 233444556668888999888875   78999999999988888888876     5555444


Q ss_pred             hHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHH--HHHcCCCeEEecCCceeeeeeeHHHHHHH
Q 025022          176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIA--QAIRGEPLTVQAPGTQTRSFCYVSDMVCK  253 (259)
Q Consensus       176 Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  253 (259)
                      ...--..-|.......+  ..+.+++|+|.|.|.+.     .++.+|+-  .+-.|.+   .|+|++.++|||++|++..
T Consensus       154 ~srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gG-----Ga~~~M~lpF~~g~GGP---lGsG~Q~fpWIHv~DL~~l  223 (315)
T KOG3019|consen  154 LSRLCLEWEGAALKANK--DVRVALIRIGVVLGKGG-----GALAMMILPFQMGAGGP---LGSGQQWFPWIHVDDLVNL  223 (315)
T ss_pred             HHHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCC-----cchhhhhhhhhhccCCc---CCCCCeeeeeeehHHHHHH
Confidence            33322233333322222  38999999999999763     35555544  3335565   5899999999999999998


Q ss_pred             HHhhh
Q 025022          254 SCFLA  258 (259)
Q Consensus       254 ~~~~l  258 (259)
                      +..++
T Consensus       224 i~~al  228 (315)
T KOG3019|consen  224 IYEAL  228 (315)
T ss_pred             HHHHH
Confidence            87664

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.22  E-value=3.3e-11  Score=90.92  Aligned_cols=161  Identities=16%  Similarity=0.113  Sum_probs=109.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCe-EEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      .++.+++||++-.||..++..+.+++.+. +++..|.... .+.++-... .......+|.++..            ..+
T Consensus         5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~-~~~L~v~~g-d~~v~~~g~~~e~~~l~al~e~~r~k~gk   82 (253)
T KOG1204|consen    5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE-LEGLKVAYG-DDFVHVVGDITEEQLLGALREAPRKKGGK   82 (253)
T ss_pred             cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc-ccceEEEec-CCcceechHHHHHHHHHHHHhhhhhcCCc
Confidence            35679999999999999999998887661 3333332222 111111111 22333444444433            346


Q ss_pred             cCEEEEccCCCCcc-------ccccChhHHHHHhhhhHHHHHHHHH----HhCC--eEEEEecceeecCCCCCCCCCCCc
Q 025022           98 VDQIYHLACPASPI-------FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        98 ~d~vi~~a~~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      -|.+|||||...+-       ...+.+..+++.|+.....+...+.    +.+.  .++++||.....            
T Consensus        83 r~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~------------  150 (253)
T KOG1204|consen   83 RDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR------------  150 (253)
T ss_pred             eeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc------------
Confidence            89999999976541       1223467899999998888876653    3332  789999987554            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGP  209 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~  209 (259)
                          |...+..|..+|++.+.+++.++.+.  ++++..++||.+-.+
T Consensus       151 ----p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~  193 (253)
T KOG1204|consen  151 ----PFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQ  193 (253)
T ss_pred             ----cccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccch
Confidence                77888899999999999999988654  678888888876554

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.16  E-value=1.7e-11  Score=88.45  Aligned_cols=161  Identities=20%  Similarity=0.226  Sum_probs=118.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      ++-..+||||...+|.+.++.|.+.|.. |+.++-..++-.+..+++-  .++.+...|++++.            +.+.
T Consensus         8 kglvalvtggasglg~ataerlakqgas-v~lldlp~skg~~vakelg--~~~vf~padvtsekdv~aala~ak~kfgrl   84 (260)
T KOG1199|consen    8 KGLVALVTGGASGLGKATAERLAKQGAS-VALLDLPQSKGADVAKELG--GKVVFTPADVTSEKDVRAALAKAKAKFGRL   84 (260)
T ss_pred             cCeeEEeecCcccccHHHHHHHHhcCce-EEEEeCCcccchHHHHHhC--CceEEeccccCcHHHHHHHHHHHHhhccce
Confidence            4668999999999999999999999999 9998877666555555543  47889999998877            6789


Q ss_pred             CEEEEccCCCCcc----------ccccChhHHHHHhhhhHHHHHHHHHH---------hCC--eEEEEecceeecCCCCC
Q 025022           99 DQIYHLACPASPI----------FYKYNPVKTIKTNVIGTLNMLGLAKR---------VGA--RILLTSTSEVYGDPLVH  157 (259)
Q Consensus        99 d~vi~~a~~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~---------~~~--~~i~~Ss~~~~~~~~~~  157 (259)
                      |+.+||||.....          ....+....+++|+.+++++++....         .|.  .+|.+.|...|..    
T Consensus        85 d~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdg----  160 (260)
T KOG1199|consen   85 DALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDG----  160 (260)
T ss_pred             eeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecC----
Confidence            9999999965321          12345677889999999999886532         222  5777777776653    


Q ss_pred             CCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          158 PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       158 ~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                                  .-....|..||.+.--+..-.+++   .||+++.+-||..-.|-
T Consensus       161 ------------q~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpl  204 (260)
T KOG1199|consen  161 ------------QTGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPL  204 (260)
T ss_pred             ------------ccchhhhhcccCceEeeechhhhhcccCceEEEeecccccCChh
Confidence                        233356888888765443333333   37899999887766554

>PRK06720 hypothetical protein; Provisional

Probab=99.09  E-value=9.5e-10  Score=82.11  Aligned_cols=79  Identities=18%  Similarity=0.154  Sum_probs=59.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||.++++.|.++|++ |++.+|+.+......++... ......+.+|+++.+            ++
T Consensus        14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~-V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G   92 (169)
T PRK06720         14 LAGKVAIVTGGGIGIGRNTALLLAKQGAK-VIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFS   92 (169)
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            56889999999999999999999999998 88888764322211121111 235667899998866            46


Q ss_pred             CcCEEEEccCCCC
Q 025022           97 EVDQIYHLACPAS  109 (259)
Q Consensus        97 ~~d~vi~~a~~~~  109 (259)
                      ++|++||+||...
T Consensus        93 ~iDilVnnAG~~~  105 (169)
T PRK06720         93 RIDMLFQNAGLYK  105 (169)
T ss_pred             CCCEEEECCCcCC
Confidence            8999999999755

>PTZ00325 malate dehydrogenase; Provisional

Probab=99.05  E-value=2.7e-09  Score=87.32  Aligned_cols=171  Identities=13%  Similarity=0.009  Sum_probs=109.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccC-CCceeEee-cccCc--cccCCcCEEEEc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-HPRFELIR-HDVTE--PLLIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~-~dl~~--~~~~~~d~vi~~  104 (259)
                      .+++||.|+|++|.||+.++..|..++. .+++.+++. ....+.+. +.. ........ .|..+  .++.++|+||++
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~-~~~g~a~D-l~~~~~~~~v~~~td~~~~~~~l~gaDvVVit   83 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV-GAPGVAAD-LSHIDTPAKVTGYADGELWEKALRGADLVLIC   83 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC-CCcccccc-hhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence            5678999999999999999999986653 248888872 21111111 100 11222221 12222  338899999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCC--CCCCCCcCCCCCCCCCCchHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVH--PQDESYWGNVNPIGVRSCYDEGKR  181 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~--~~~e~~~~~~~~~~~~~~Y~~sK~  181 (259)
                      +|....  ...+..+.+..|+..+.++++.+++++. ++|+++|-.+-....-.  ...+.+     .+++...||.+-.
T Consensus        84 aG~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~s-----g~p~~~viG~g~L  156 (321)
T PTZ00325         84 AGVPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAG-----VYDPRKLFGVTTL  156 (321)
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhcc-----CCChhheeechhH
Confidence            997542  2345678899999999999999999998 99999987542211100  001111     4455566777644


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 025022          182 VAETLMFDYHRQHGIEIRIARIFNTYGPR  210 (259)
Q Consensus       182 ~~e~~~~~~~~~~~~~~~~lr~~~v~g~~  210 (259)
                      -.-++....++..++....++ +.|+|..
T Consensus       157 Ds~R~r~~la~~l~v~~~~V~-~~VlGeH  184 (321)
T PTZ00325        157 DVVRARKFVAEALGMNPYDVN-VPVVGGH  184 (321)
T ss_pred             HHHHHHHHHHHHhCcChhheE-EEEEeec
Confidence            444555556677788877777 6777754

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=98.97  E-value=3.6e-09  Score=81.28  Aligned_cols=171  Identities=15%  Similarity=0.147  Sum_probs=115.3

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCC----eEEEEcCCCCCCcchh---hhccC--CCceeEeecccCccc-------
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKN----EVIVVDNYFTGSKDNL---RKWIG--HPRFELIRHDVTEPL-------   94 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~----~V~~~~r~~~~~~~~~---~~~~~--~~~~~~~~~dl~~~~-------   94 (259)
                      ..|.++|||++..||.+|+..|++...+    .+++..|+-++..+..   +...+  ..+++++..|+++..       
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~   81 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK   81 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence            4578999999999999999999998544    2555556555444333   33333  347888999999876       


Q ss_pred             -----cCCcCEEEEccCCCCccc-------------------------------cccChhHHHHHhhhhHHHHHHHHHHh
Q 025022           95 -----LIEVDQIYHLACPASPIF-------------------------------YKYNPVKTIKTNVIGTLNMLGLAKRV  138 (259)
Q Consensus        95 -----~~~~d~vi~~a~~~~~~~-------------------------------~~~~~~~~~~~n~~~~~~l~~~~~~~  138 (259)
                           +.+.|.++.+||......                               ..++..+.++.|+.|..-+++.....
T Consensus        82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl  161 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL  161 (341)
T ss_pred             HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence                 678999999998654211                               22445678999999999888766543


Q ss_pred             ----CC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccC
Q 025022          139 ----GA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYG  208 (259)
Q Consensus       139 ----~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g  208 (259)
                          .. ++|.+||...-...-       +.++........+|..||.+.+.+....-+.   .|+...++.||....
T Consensus       162 l~~~~~~~lvwtSS~~a~kk~l-------sleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt  232 (341)
T KOG1478|consen  162 LCHSDNPQLVWTSSRMARKKNL-------SLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTT  232 (341)
T ss_pred             hhcCCCCeEEEEeecccccccC-------CHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeec
Confidence                22 899999976432211       1122234455678999999988776554333   356666777766544

>PRK08309 short chain dehydrogenase; Provisional

Probab=98.96  E-value=2.5e-09  Score=80.30  Aligned_cols=96  Identities=16%  Similarity=0.096  Sum_probs=68.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcCE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQ  100 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d~  100 (259)
                      |+++||||||++|. +++.|.++|+. |++..|+................+..+.+|+.+.+            .+++|.
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~G~~-V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~   78 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEKGFH-VSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDL   78 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHCcCE-EEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeE
Confidence            68999999988775 99999999998 88888764332221111111246788889999987            356778


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-----eEEEEecc
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-----RILLTSTS  148 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-----~~i~~Ss~  148 (259)
                      +|+.+                  +..++.++..+|++.++     +|+|+=+.
T Consensus        79 lv~~v------------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs  113 (177)
T PRK08309         79 AVAWI------------------HSSAKDALSVVCRELDGSSETYRLFHVLGS  113 (177)
T ss_pred             EEEec------------------cccchhhHHHHHHHHccCCCCceEEEEeCC
Confidence            77654                  45567889999998886     48776643

>PLN00106 malate dehydrogenase

Probab=98.91  E-value=5.1e-08  Score=79.95  Aligned_cols=170  Identities=11%  Similarity=-0.027  Sum_probs=110.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccC-CCceeEee-cccCc--cccCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-HPRFELIR-HDVTE--PLLIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~-~dl~~--~~~~~~d~vi~~a~  106 (259)
                      ..||.|+|++|.+|..++..|..++. .++++++.+. .....+. +.. ........ .+-.+  ++++++|+||++||
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a~D-l~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG   95 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVAAD-VSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG   95 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeEch-hhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence            36999999999999999999987764 3488888765 2221111 100 11112211 11111  22889999999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      ....  ......+.+..|...++++++.+++++. .+++++|--+-+...  ..+. .......++|...|+.++...++
T Consensus        96 ~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~--i~t~-~~~~~s~~p~~~viG~~~LDs~R  170 (323)
T PLN00106         96 VPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVP--IAAE-VLKKAGVYDPKKLFGVTTLDVVR  170 (323)
T ss_pred             CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHH--HHHH-HHHHcCCCCcceEEEEecchHHH
Confidence            7642  2356788999999999999999999998 777777742210000  0000 00011145566778888888888


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCC
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGP  209 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~  209 (259)
                      +-..+++..+++...+.. .++|.
T Consensus       171 l~~~lA~~lgv~~~~V~~-~ViGe  193 (323)
T PLN00106        171 ANTFVAEKKGLDPADVDV-PVVGG  193 (323)
T ss_pred             HHHHHHHHhCCChhheEE-EEEEe
Confidence            888888888888777754 45553

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=98.83  E-value=2.7e-07  Score=76.55  Aligned_cols=78  Identities=15%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             cCCCEEEEEcCchhhhHH--HHHHHHhcCCCeEEEEcCCCCCCc-----------chhhhccCC--CceeEeecccCccc
Q 025022           30 QSNMRILVTGGAGFIGSH--LVDKLMENEKNEVIVVDNYFTGSK-----------DNLRKWIGH--PRFELIRHDVTEPL   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~--l~~~L~~~g~~~V~~~~r~~~~~~-----------~~~~~~~~~--~~~~~~~~dl~~~~   94 (259)
                      ..+|++||||+++.+|.+  +++.| +.|.. |+++.+......           +.+......  ..+..+.+|+++.+
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~-Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E  116 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGAD-TLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE  116 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCe-EEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence            446899999999999999  89999 99998 777764321111           112222211  24567899999977


Q ss_pred             ------------cCCcCEEEEccCCCC
Q 025022           95 ------------LIEVDQIYHLACPAS  109 (259)
Q Consensus        95 ------------~~~~d~vi~~a~~~~  109 (259)
                                  ++++|++||++|...
T Consensus       117 ~v~~lie~I~e~~G~IDiLVnSaA~~~  143 (398)
T PRK13656        117 IKQKVIELIKQDLGQVDLVVYSLASPR  143 (398)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCccCC
Confidence                        578999999999763

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=98.77  E-value=5.8e-08  Score=79.86  Aligned_cols=165  Identities=11%  Similarity=0.059  Sum_probs=112.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC------eEEEEcCCCCCC-cchhhhccCC------CceeEeecccCccccCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYFTGS-KDNLRKWIGH------PRFELIRHDVTEPLLIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~------~V~~~~r~~~~~-~~~~~~~~~~------~~~~~~~~dl~~~~~~~~   98 (259)
                      .+||.|+|++|.+|..++..|+..+..      +++.++..+... .......+.+      ..+.....|  ..++.++
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~--~~~~~da   79 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDP--NVAFKDA   79 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCc--HHHhCCC
Confidence            369999999999999999999987752      488888754321 1111111111      122222111  1228899


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C--eEEEEecce---eecCCCCCCCCCCCcCCCCCCCC
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTSE---VYGDPLVHPQDESYWGNVNPIGV  172 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~~Ss~~---~~~~~~~~~~~e~~~~~~~~~~~  172 (259)
                      |+||.+||...  ....+..+.+..|....+.+....++++ .  .+|.+|-..   .|-..     ...     ...++
T Consensus        80 DivvitaG~~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~-----k~s-----g~~p~  147 (322)
T cd01338          80 DWALLVGAKPR--GPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAM-----KNA-----PDIPP  147 (322)
T ss_pred             CEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHH-----HHc-----CCCCh
Confidence            99999999754  2345677889999999999999998876 3  667666421   11000     000     01344


Q ss_pred             CCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 025022          173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR  210 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~  210 (259)
                      ...|+.++...+++...+++..+++...+|..+|||+.
T Consensus       148 ~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH  185 (322)
T cd01338         148 DNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH  185 (322)
T ss_pred             HheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC
Confidence            55788899999999999999999999999988999986

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=98.74  E-value=1e-06  Score=67.12  Aligned_cols=196  Identities=13%  Similarity=0.111  Sum_probs=120.8

Q ss_pred             ccCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC-CceeEeecccCccc-----------
Q 025022           29 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPL-----------   94 (259)
Q Consensus        29 ~~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~dl~~~~-----------   94 (259)
                      .+.+|++||+|-.  -.|+..|++.|.++|.+ +......+ +...+.+++.+. .....++||+++.+           
T Consensus         3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAe-L~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~   80 (259)
T COG0623           3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAE-LAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKK   80 (259)
T ss_pred             ccCCceEEEEEecccccHHHHHHHHHHHcCCE-EEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHH
Confidence            5789999999954  45899999999999998 77776543 233333333221 23456899999887           


Q ss_pred             -cCCcCEEEEccCCCCccc--------cccChhHHHHHhhhhHHHHHHHHHHh---CC---eEEEEecceeecCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV---GA---RILLTSTSEVYGDPLVHPQ  159 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~---~~i~~Ss~~~~~~~~~~~~  159 (259)
                       .+++|.++|+.+....+.        ..+++...+++.......++++++..   |.   .+-|.+|..          
T Consensus        81 ~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r----------  150 (259)
T COG0623          81 KWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSER----------  150 (259)
T ss_pred             hhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEecccee----------
Confidence             578999999999765311        11233445555666666677777653   22   333433322          


Q ss_pred             CCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcc--HHHHHHHHHHcCCCeEE
Q 025022          160 DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQAIRGEPLTV  234 (259)
Q Consensus       160 ~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~  234 (259)
                               ..+..+..+..|++.|.-++.++.+.   |+++..+-.    ||-.......  -+..+++.....-|++ 
T Consensus       151 ---------~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISA----GPIrTLAasgI~~f~~~l~~~e~~aPl~-  216 (259)
T COG0623         151 ---------VVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISA----GPIRTLAASGIGDFRKMLKENEANAPLR-  216 (259)
T ss_pred             ---------ecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecc----cchHHHHhhccccHHHHHHHHHhhCCcc-
Confidence                     33444679999999999999998876   456655544    3332111100  2334444433333322 


Q ss_pred             ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          235 QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       235 ~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                              .-+.++||....++++
T Consensus       217 --------r~vt~eeVG~tA~fLl  232 (259)
T COG0623         217 --------RNVTIEEVGNTAAFLL  232 (259)
T ss_pred             --------CCCCHHHhhhhHHHHh
Confidence                    2346788877776665

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.71  E-value=2.8e-07  Score=76.07  Aligned_cols=112  Identities=16%  Similarity=0.116  Sum_probs=73.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC------eEEEEcCCCCCC-cchhhhccCCCceeEeeccc---Cc--cccCCcCE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDV---TE--PLLIEVDQ  100 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~------~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~dl---~~--~~~~~~d~  100 (259)
                      .+|+||||+|++|++++..|+..+..      ++++++++.... .......+.+.. .....|+   .+  .++.++|+
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~-~~~~~~~~~~~~~~~~l~~aDi   81 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCA-FPLLKSVVATTDPEEAFKDVDV   81 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhcc-ccccCCceecCCHHHHhCCCCE
Confidence            58999999999999999999986531      489998854321 111110000000 0001111   12  22789999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C--eEEEEec
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST  147 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~~Ss  147 (259)
                      |||+||....  ...+..+.++.|+...+.+....+++. .  .+|.+|.
T Consensus        82 VI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          82 AILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             EEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            9999997642  344568899999999999999888873 3  6666664

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.58  E-value=2e-07  Score=77.56  Aligned_cols=94  Identities=26%  Similarity=0.304  Sum_probs=71.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~  106 (259)
                      +|+|+|+|+ |++|+.++..|++++..+|++.+|+..+........  ..+++.++.|..+.+     +.+.|+|||++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--GGKVEALQVDAADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--cccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence            579999998 999999999999999445999999644333221211  237899999999986     677899999986


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEe
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~S  146 (259)
                      +...                  ..++++|.+.|+.++=+|
T Consensus        78 ~~~~------------------~~i~ka~i~~gv~yvDts   99 (389)
T COG1748          78 PFVD------------------LTILKACIKTGVDYVDTS   99 (389)
T ss_pred             chhh------------------HHHHHHHHHhCCCEEEcc
Confidence            4321                  278899999998766554

>PRK09620 hypothetical protein; Provisional

Probab=98.56  E-value=2e-07  Score=72.83  Aligned_cols=77  Identities=19%  Similarity=0.421  Sum_probs=51.2

Q ss_pred             cCCCEEEEEcCc----------------hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeec--ccC
Q 025022           30 QSNMRILVTGGA----------------GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH--DVT   91 (259)
Q Consensus        30 ~~~~~vlItGat----------------G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--dl~   91 (259)
                      +.+++|+||+|.                ||+|.+|++.|+++|++ |+++.+...........   ...+..+.+  |+.
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~-V~li~g~~~~~~~~~~~---~~~~~~V~s~~d~~   76 (229)
T PRK09620          1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAH-VIYLHGYFAEKPNDINN---QLELHPFEGIIDLQ   76 (229)
T ss_pred             CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCe-EEEEeCCCcCCCcccCC---ceeEEEEecHHHHH
Confidence            468999999875                99999999999999998 88877643211111110   112333444  444


Q ss_pred             ccc---c--CCcCEEEEccCCCCc
Q 025022           92 EPL---L--IEVDQIYHLACPASP  110 (259)
Q Consensus        92 ~~~---~--~~~d~vi~~a~~~~~  110 (259)
                      +.-   +  .++|+|||+|+....
T Consensus        77 ~~l~~~~~~~~~D~VIH~AAvsD~  100 (229)
T PRK09620         77 DKMKSIITHEKVDAVIMAAAGSDW  100 (229)
T ss_pred             HHHHHHhcccCCCEEEECccccce
Confidence            321   3  468999999998654

>PRK05086 malate dehydrogenase; Provisional

Probab=98.50  E-value=2.6e-06  Score=69.97  Aligned_cols=112  Identities=19%  Similarity=0.088  Sum_probs=74.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHh-cCC-CeEEEEcCCCCCCcchhhhccCCCceeEeec-ccCc--cccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLME-NEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTE--PLLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~-~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-dl~~--~~~~~~d~vi~~a~~  107 (259)
                      |||+|+||+|.+|++++..|.. .+. .+++++++++......+ .+........+.+ +-.+  .++.++|+||.++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~al-Dl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAV-DLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceeh-hhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence            7999999999999999998855 232 33777777543211111 1111111122222 1222  237789999999997


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEec
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss  147 (259)
                      ...  ...+..+.+..|......+++.+++++. ++|.+.|
T Consensus        80 ~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs  118 (312)
T PRK05086         80 ARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT  118 (312)
T ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            642  2345678889999999999999999987 6666665

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.46  E-value=3e-06  Score=61.27  Aligned_cols=112  Identities=13%  Similarity=0.104  Sum_probs=75.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      |||.|+|++|.+|++++..|...+. ++++.++++.........++   ............-...+++++|+||.+||..
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            6999999999999999999999875 35888888643211111111   0011122221122222278999999999975


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      .  ....+..+.++.|....+.+++...+.+.  .++.+|
T Consensus        81 ~--~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt  118 (141)
T PF00056_consen   81 R--KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT  118 (141)
T ss_dssp             S--STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred             c--cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence            4  33456778889999999999999998876  566554

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.36  E-value=1.3e-06  Score=68.47  Aligned_cols=64  Identities=16%  Similarity=0.318  Sum_probs=43.9

Q ss_pred             cCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCcc-------ccCCcCEEEEccCCCC
Q 025022           39 GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIYHLACPAS  109 (259)
Q Consensus        39 GatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~-------~~~~~d~vi~~a~~~~  109 (259)
                      .+||++|.+|+++|+++|+. |+++.|.......      ...++.++.++..+.       ...++|+|||+||...
T Consensus        23 ~SSG~iG~aLA~~L~~~G~~-V~li~r~~~~~~~------~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd   93 (229)
T PRK06732         23 HSTGQLGKIIAETFLAAGHE-VTLVTTKTAVKPE------PHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD   93 (229)
T ss_pred             ccchHHHHHHHHHHHhCCCE-EEEEECcccccCC------CCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence            57899999999999999998 8888764321110      012455555433321       1567999999999864

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.34  E-value=1.1e-06  Score=74.71  Aligned_cols=92  Identities=27%  Similarity=0.270  Sum_probs=63.2

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccCCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPA  108 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~~~  108 (259)
                      |+|+|+ |++|+.+++.|.+++.. .|++.+|+..+.....+. ....++..+..|+.+.+     +.++|+|||++++.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEK-LLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhh-ccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence            789999 99999999999999753 599999864433322222 13468999999999877     67899999999854


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEe
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~S  146 (259)
                      .                  ...++++|.+.|+++|=+|
T Consensus        79 ~------------------~~~v~~~~i~~g~~yvD~~   98 (386)
T PF03435_consen   79 F------------------GEPVARACIEAGVHYVDTS   98 (386)
T ss_dssp             G------------------HHHHHHHHHHHT-EEEESS
T ss_pred             h------------------hHHHHHHHHHhCCCeeccc
Confidence            1                  1367888888887666543

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd00704 MDH Malate dehydrogenase

Probab=98.34  E-value=6.4e-06  Score=67.91  Aligned_cols=108  Identities=17%  Similarity=0.134  Sum_probs=72.9

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCC------eEEEEcCCC--CCCcchhhhccCC------CceeEeecccCccccCCcC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYF--TGSKDNLRKWIGH------PRFELIRHDVTEPLLIEVD   99 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~------~V~~~~r~~--~~~~~~~~~~~~~------~~~~~~~~dl~~~~~~~~d   99 (259)
                      +|.|+||+|.+|+.++..|...+..      +++.++++.  +... .....+.+      .... +..+ ..++++++|
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~-g~~~Dl~d~~~~~~~~~~-i~~~-~~~~~~~aD   78 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALE-GVVMELQDCAFPLLKGVV-ITTD-PEEAFKDVD   78 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccc-eeeeehhhhcccccCCcE-EecC-hHHHhCCCC
Confidence            7999999999999999999887643      288888765  2111 11100100      1111 1111 122388999


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C--eEEEEe
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTS  146 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~~S  146 (259)
                      +||++||...  ....+..+.+..|....+.+....+++. .  .+|.+|
T Consensus        79 iVVitAG~~~--~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          79 VAILVGAFPR--KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             EEEEeCCCCC--CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            9999999754  2345677889999999999999998884 5  666665

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.34  E-value=1.3e-05  Score=56.48  Aligned_cols=98  Identities=17%  Similarity=0.250  Sum_probs=56.9

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCce-eEeecccCccccCCcCEEEEccCCCCcc
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRF-ELIRHDVTEPLLIEVDQIYHLACPASPI  111 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~-~~~~~dl~~~~~~~~d~vi~~a~~~~~~  111 (259)
                      ||.|+||||++|+.|++.|.+...-+++.+..++......+....+ .... +....+.....+.++|+||.+.+.    
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~----   76 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH----   76 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH----
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch----
Confidence            6899999999999999999996443444444333322222222211 0111 122222222226899999998641    


Q ss_pred             ccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                    .....+...+.+.|.++|=.|+..
T Consensus        77 --------------~~~~~~~~~~~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   77 --------------GASKELAPKLLKAGIKVIDLSGDF  100 (121)
T ss_dssp             --------------HHHHHHHHHHHHTTSEEEESSSTT
T ss_pred             --------------hHHHHHHHHHhhCCcEEEeCCHHH
Confidence                          223456667778887777666543

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=98.29  E-value=4.3e-06  Score=66.43  Aligned_cols=70  Identities=14%  Similarity=0.183  Sum_probs=47.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a~  106 (259)
                      |+|||+||||. |+.|++.|.+.|++ |++..+....... +..   ......+.+-+...+      ..++|+||+++.
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~-v~~s~~t~~~~~~-~~~---~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtH   74 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIE-ILVTVTTSEGKHL-YPI---HQALTVHTGALDPQELREFLKRHSIDILVDATH   74 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCe-EEEEEccCCcccc-ccc---cCCceEEECCCCHHHHHHHHHhcCCCEEEEcCC
Confidence            68999999999 99999999999998 8888876543321 111   112233333332222      457999999886


Q ss_pred             CC
Q 025022          107 PA  108 (259)
Q Consensus       107 ~~  108 (259)
                      ++
T Consensus        75 Pf   76 (256)
T TIGR00715        75 PF   76 (256)
T ss_pred             HH
Confidence            54

This enzyme was found to be a monomer by gel filtration.

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.26  E-value=2.9e-06  Score=71.79  Aligned_cols=71  Identities=23%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             ccCCCEEEEEcC----------------chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCc
Q 025022           29 FQSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE   92 (259)
Q Consensus        29 ~~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~   92 (259)
                      ++.+++++||||                +|.+|.+++++|.++|++ |+++.++....     .   ..++  ...|+.+
T Consensus       185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~-V~~v~~~~~~~-----~---~~~~--~~~dv~~  253 (399)
T PRK05579        185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGAD-VTLVSGPVNLP-----T---PAGV--KRIDVES  253 (399)
T ss_pred             ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCE-EEEeCCCcccc-----C---CCCc--EEEccCC
Confidence            467899999999                899999999999999999 88888754211     0   1122  2445555


Q ss_pred             cc---------cCCcCEEEEccCCCCc
Q 025022           93 PL---------LIEVDQIYHLACPASP  110 (259)
Q Consensus        93 ~~---------~~~~d~vi~~a~~~~~  110 (259)
                      .+         ++++|++||+||....
T Consensus       254 ~~~~~~~v~~~~~~~DilI~~Aav~d~  280 (399)
T PRK05579        254 AQEMLDAVLAALPQADIFIMAAAVADY  280 (399)
T ss_pred             HHHHHHHHHHhcCCCCEEEEccccccc
Confidence            44         5679999999997654

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.22  E-value=2.2e-05  Score=64.55  Aligned_cols=112  Identities=14%  Similarity=0.074  Sum_probs=74.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCC--CCCcchh---hhc-cCC-CceeEee-cccCccccCCcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF--TGSKDNL---RKW-IGH-PRFELIR-HDVTEPLLIEVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~--~~~~~~~---~~~-~~~-~~~~~~~-~dl~~~~~~~~d~vi~  103 (259)
                      |+|.|+|+||++|..++..|+..|.. +|+++++..  +......   ... ... ....+.. .|.  .++.++|+||.
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~--~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL--SDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH--HHhCCCCEEEE
Confidence            68999999999999999999999864 588888843  1111110   010 000 1122221 232  23889999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecc
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTS  148 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~  148 (259)
                      ++|...  ....+..+.+..|....+.+++.+.+.+.  .+|.+++.
T Consensus        79 tag~p~--~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np  123 (309)
T cd05294          79 TAGVPR--KEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP  123 (309)
T ss_pred             ecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            998653  22334567888999999999998887755  77777763

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.21  E-value=2e-06  Score=65.90  Aligned_cols=77  Identities=12%  Similarity=0.135  Sum_probs=52.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~  103 (259)
                      ++++++++|+||+|.+|+.+++.|.+.|++ |+++.|+..+............+.....+|..+.+     +.++|+||+
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~-V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREGAR-VVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            456789999999999999999999999986 88888864332221111111113344455555432     678999998


Q ss_pred             ccC
Q 025022          104 LAC  106 (259)
Q Consensus       104 ~a~  106 (259)
                      +..
T Consensus       104 at~  106 (194)
T cd01078         104 AGA  106 (194)
T ss_pred             CCC
Confidence            664

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=98.17  E-value=3.6e-05  Score=63.53  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=73.0

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCC------eEEEEcCCCCCC-cchhhhccCCCc---e-eEeecccCccccCCcCEEE
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYFTGS-KDNLRKWIGHPR---F-ELIRHDVTEPLLIEVDQIY  102 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~------~V~~~~r~~~~~-~~~~~~~~~~~~---~-~~~~~dl~~~~~~~~d~vi  102 (259)
                      +|.|+|++|.+|++++..|...+..      +++++++++... .+.....+.+..   . ..+..+-...++.++|+||
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999999999999999886543      388888754431 111111111111   0 0111111122388999999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C--eEEEEec
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST  147 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~~Ss  147 (259)
                      ++||....  ...+..+.+..|+...+.+.....++. .  .+|.+|-
T Consensus        81 itAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN  126 (324)
T TIGR01758        81 LVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN  126 (324)
T ss_pred             EcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            99997642  234578889999999999999999884 4  6666664

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.14  E-value=4e-06  Score=69.08  Aligned_cols=73  Identities=22%  Similarity=0.215  Sum_probs=49.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCcc--ccCCcCEEEEcc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--LLIEVDQIYHLA  105 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~--~~~~~d~vi~~a  105 (259)
                      ++++++|+||||+|+||+.++++|+++ |...++++.|+..... .+...+.       .+++.+.  .+.++|+|||++
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~-~La~el~-------~~~i~~l~~~l~~aDiVv~~t  223 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQ-ELQAELG-------GGKILSLEEALPEADIVVWVA  223 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHH-HHHHHhc-------cccHHhHHHHHccCCEEEECC
Confidence            467899999999999999999999865 5555888887533222 2222111       1222222  267899999999


Q ss_pred             CCCC
Q 025022          106 CPAS  109 (259)
Q Consensus       106 ~~~~  109 (259)
                      +...
T Consensus       224 s~~~  227 (340)
T PRK14982        224 SMPK  227 (340)
T ss_pred             cCCc
Confidence            8643

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=98.11  E-value=8.6e-05  Score=60.80  Aligned_cols=112  Identities=16%  Similarity=0.033  Sum_probs=75.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccCC-CceeEee--ccc-CccccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH-PRFELIR--HDV-TEPLLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~--~dl-~~~~~~~~d~vi~~a~~  107 (259)
                      |||.|+|++|.+|.+++-.|...+. .++++++.+ ....+.+. +... .......  +|- .-.+++++|+||.+||.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alD-L~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~   78 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAAD-LSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV   78 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehH-hHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence            6899999999999999999988874 348888876 22221111 1111 1112221  210 01338899999999997


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecc
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTS  148 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~  148 (259)
                      ..  ....+..+.+..|....+.+++..++++.  .+|.+|-.
T Consensus        79 ~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          79 PR--KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            53  23456788899999999999999988876  66666643

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.10  E-value=2.4e-05  Score=65.02  Aligned_cols=95  Identities=20%  Similarity=0.184  Sum_probs=58.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~  109 (259)
                      +++|+|.||||++|+.|++.|.++++.  ++..+.+...... .+.  +  .+.+....|+.+..+.++|+||.+++.. 
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~-~l~--~--~g~~i~v~d~~~~~~~~vDvVf~A~g~g-   74 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGK-ELS--F--KGKELKVEDLTTFDFSGVDIALFSAGGS-   74 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCC-eee--e--CCceeEEeeCCHHHHcCCCEEEECCChH-
Confidence            479999999999999999999998776  2466655432221 111  1  1223333455544456899999887532 


Q ss_pred             ccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                       ....++..+.+.|.++|=.|+..
T Consensus        75 -----------------~s~~~~~~~~~~G~~VIDlS~~~   97 (334)
T PRK14874         75 -----------------VSKKYAPKAAAAGAVVIDNSSAF   97 (334)
T ss_pred             -----------------HHHHHHHHHHhCCCEEEECCchh
Confidence                             11234444445566666666643

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.10  E-value=6.3e-05  Score=61.99  Aligned_cols=112  Identities=13%  Similarity=0.151  Sum_probs=77.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccC----CCceeEeecccCccccCCcCEEEEc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~dl~~~~~~~~d~vi~~  104 (259)
                      ..++||.|+|+ |.+|..++..|...+.. ++++++++.........++..    ..++.....|.  ++++++|+||.+
T Consensus         4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~--~~~~~adivIit   80 (315)
T PRK00066          4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY--SDCKDADLVVIT   80 (315)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH--HHhCCCCEEEEe
Confidence            34679999997 99999999999998863 588888865433211111111    01333333332  237899999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ||...  ....+..+.+..|....+.++..+.+.+.  .+|.+|
T Consensus        81 ag~~~--k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         81 AGAPQ--KPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             cCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            99753  23456678889999999999999988765  666665

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.05  E-value=2e-05  Score=68.42  Aligned_cols=76  Identities=22%  Similarity=0.246  Sum_probs=56.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcch-hhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +++++|+|+|+++ +|..+++.|+++|+. |++.++........ ..+ +...+++++.+|..+....++|+||+++|..
T Consensus         3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~   79 (450)
T PRK14106          3 LKGKKVLVVGAGV-SGLALAKFLKKLGAK-VILTDEKEEDQLKEALEE-LGELGIELVLGEYPEEFLEGVDLVVVSPGVP   79 (450)
T ss_pred             cCCCEEEEECCCH-HHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHH-HHhcCCEEEeCCcchhHhhcCCEEEECCCCC
Confidence            5679999999877 999999999999998 99998754221111 122 2223677888888876667899999998853

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=98.05  E-value=7.9e-05  Score=62.86  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC-CceeEe-ecccCccccCCcCEEEEccCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELI-RHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~-~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +.|+|.|.||||++|+.|++.|.++...++..+.+.... .+.+...... ...+.. ..++...++.++|+||.+.+. 
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~sa-G~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~-  114 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKA-GQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH-  114 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhc-CCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH-
Confidence            567999999999999999999999954448887764322 1111111100 000010 011222225689999987642 


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecC
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~  153 (259)
                                       .....++..+ +.++++|-.|+..-+.+
T Consensus       115 -----------------~~s~~i~~~~-~~g~~VIDlSs~fRl~~  141 (381)
T PLN02968        115 -----------------GTTQEIIKAL-PKDLKIVDLSADFRLRD  141 (381)
T ss_pred             -----------------HHHHHHHHHH-hCCCEEEEcCchhccCC
Confidence                             1334555555 35669999999876654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.03  E-value=1e-05  Score=58.13  Aligned_cols=78  Identities=19%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +.++++++|.|+ |..|+.++..|.+.|.+.|+++.|+..+..+..+. +....+..+..+-......++|+||++.+..
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~-~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~   86 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEE-FGGVNIEAIPLEDLEEALQEADIVINATPSG   86 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHH-HTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHH-cCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence            567899999996 88999999999999999899999865443333222 2323455555544433377899999987644

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=98.00  E-value=0.00011  Score=59.61  Aligned_cols=111  Identities=15%  Similarity=0.078  Sum_probs=75.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccCC----CceeEeecccCccccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      +||.|+|+ |++|+.++-.|+.++.. +++.++.......-...++...    ..-..+.+|-.-.++.+.|+|+-+||.
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~   79 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGV   79 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCC
Confidence            58999999 99999999999888765 6999988733322111111110    011223333112237899999999987


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ..  ....+..++++.|....+.+.+...+.+.  .|+.+|
T Consensus        80 pr--KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt  118 (313)
T COG0039          80 PR--KPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT  118 (313)
T ss_pred             CC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence            64  33456778899999999999999988876  555554

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.99  E-value=6e-05  Score=62.00  Aligned_cols=110  Identities=14%  Similarity=0.143  Sum_probs=76.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccC-----CCceeEeecccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      ++|.|+|+ |.+|+.++..|+..|.. ++++++++.........++..     .........+.  .++.++|+||+++|
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~--~~l~~aDIVIitag   77 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY--SDCKDADIVVITAG   77 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH--HHhCCCCEEEEccC
Confidence            47999995 99999999999999853 499999865543222111100     11222332222  22689999999998


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      ...  ....+..+.+..|....+.+.+.+++++.  .+|.+|-
T Consensus        78 ~~~--~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN  118 (306)
T cd05291          78 APQ--KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN  118 (306)
T ss_pred             CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            754  23445678889999999999999998876  6666663

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.97  E-value=0.0002  Score=58.80  Aligned_cols=110  Identities=15%  Similarity=0.009  Sum_probs=74.5

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccCC-CceeEee--cc-cCccccCCcCEEEEccCCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH-PRFELIR--HD-VTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~--~d-l~~~~~~~~d~vi~~a~~~  108 (259)
                      ||.|+|++|.+|.+++-.|...+. .++++++.++ .....+. +... .......  ++ -...+++++|+||.+||..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D-L~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~   78 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD-LSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP   78 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch-hhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence            689999999999999999988875 3588888765 2222111 1111 1122221  11 0123488999999999975


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      .  ....+..+.+..|....+.+++...+.+.  .+|.+|-
T Consensus        79 ~--~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN  117 (312)
T TIGR01772        79 R--KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN  117 (312)
T ss_pred             C--CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            3  23456778889999999999999888765  6666664

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=97.96  E-value=7.4e-06  Score=66.40  Aligned_cols=76  Identities=14%  Similarity=0.178  Sum_probs=58.9

Q ss_pred             EEEEEcCchhhhHHHHHHHHh----cCCCeEEEEcCCCCCCcchhhhccCC-----CceeEeecccCccc-----cCCcC
Q 025022           34 RILVTGGAGFIGSHLVDKLME----NEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPL-----LIEVD   99 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~----~g~~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~dl~~~~-----~~~~d   99 (259)
                      -++|.|||||-|..+++++.+    .+.. .-+..|+..+..+.++..-..     ....++.+|..|++     .+++.
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~~s-lavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~   85 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEGLS-LAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQAR   85 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccCce-EEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhE
Confidence            489999999999999999999    6777 888888777665555443221     22237889998887     67899


Q ss_pred             EEEEccCCCCc
Q 025022          100 QIYHLACPASP  110 (259)
Q Consensus       100 ~vi~~a~~~~~  110 (259)
                      +|+||+|+...
T Consensus        86 vivN~vGPyR~   96 (423)
T KOG2733|consen   86 VIVNCVGPYRF   96 (423)
T ss_pred             EEEecccccee
Confidence            99999998753

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.87  E-value=0.00012  Score=61.32  Aligned_cols=37  Identities=19%  Similarity=0.354  Sum_probs=30.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      |++++|+|+||||++|+.+++.|.+....+++++.++
T Consensus         1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s   37 (349)
T PRK08664          1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAAS   37 (349)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC
Confidence            3468999999999999999999998766457777443

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.85  E-value=0.00013  Score=60.44  Aligned_cols=96  Identities=17%  Similarity=0.182  Sum_probs=57.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~  109 (259)
                      +++|.|+||||++|+.+++.|.++++.  ++..+.... .....+.  +....+.+...|  ..++.++|++|.+.+.. 
T Consensus         4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~-~aG~~l~--~~~~~l~~~~~~--~~~~~~vD~vFla~p~~-   77 (336)
T PRK05671          4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSE-SAGHSVP--FAGKNLRVREVD--SFDFSQVQLAFFAAGAA-   77 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcc-cCCCeec--cCCcceEEeeCC--hHHhcCCCEEEEcCCHH-
Confidence            479999999999999999999987665  233443322 2221111  111122222222  22256899999876411 


Q ss_pred             ccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEeccee
Q 025022          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (259)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~  150 (259)
                                       ....++..+.+.|+++|=.|+..-
T Consensus        78 -----------------~s~~~v~~~~~~G~~VIDlS~~fR  101 (336)
T PRK05671         78 -----------------VSRSFAEKARAAGCSVIDLSGALP  101 (336)
T ss_pred             -----------------HHHHHHHHHHHCCCeEEECchhhc
Confidence                             112366777777878888887754

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.85  E-value=0.00013  Score=51.56  Aligned_cols=94  Identities=21%  Similarity=0.322  Sum_probs=52.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHh-cCCCeEEEEcCCCCC-CcchhhhccCC--CceeEeecccCccccCCcCEEEEccCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTG-SKDNLRKWIGH--PRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~-~~~~~~~~~~~--~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      |||.|.|.+|.+|+.+++.+.+ .+.+.+-+++++.+. ...........  .++. +.-|+ +..+..+|++|...   
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~-v~~~l-~~~~~~~DVvIDfT---   75 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVP-VTDDL-EELLEEADVVIDFT---   75 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSB-EBS-H-HHHTTH-SEEEEES---
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccc-cchhH-HHhcccCCEEEEcC---
Confidence            6899999999999999999999 466645555554411 11111111110  1111 11222 11255699999865   


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEe
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~S  146 (259)
                                     +-......++.|.++++.+|.-+
T Consensus        76 ---------------~p~~~~~~~~~~~~~g~~~ViGT   98 (124)
T PF01113_consen   76 ---------------NPDAVYDNLEYALKHGVPLVIGT   98 (124)
T ss_dssp             ----------------HHHHHHHHHHHHHHT-EEEEE-
T ss_pred             ---------------ChHHhHHHHHHHHhCCCCEEEEC
Confidence                           23344568888888888655433

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.83  E-value=0.00035  Score=57.67  Aligned_cols=111  Identities=14%  Similarity=0.092  Sum_probs=74.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC-C-----eEEEEcCCCCCC-cchhhhccCC------CceeEeecccCccccCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVVDNYFTGS-KDNLRKWIGH------PRFELIRHDVTEPLLIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~-~-----~V~~~~r~~~~~-~~~~~~~~~~------~~~~~~~~dl~~~~~~~~   98 (259)
                      ..||.|+|++|.+|++++..|...+. .     +++.++.+.... .......+.+      ..+....+|.  .+++++
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~--~~~~da   80 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPE--EAFKDV   80 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChH--HHhCCC
Confidence            46899999999999999999988874 2     488888754221 1111111111      1122221111  227899


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC--C-eEEEEe
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTS  146 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~~S  146 (259)
                      |+||.+||...  ....+..+.+..|....+.+...++++.  . .++.+|
T Consensus        81 DvVVitAG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  129 (323)
T TIGR01759        81 DAALLVGAFPR--KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG  129 (323)
T ss_pred             CEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            99999999753  2345678899999999999999988875  3 566665

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.82  E-value=0.00026  Score=60.54  Aligned_cols=111  Identities=9%  Similarity=0.065  Sum_probs=76.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc-------CCC-eEEEEcCCCCCCcchhhhccCC-----CceeEeecccCccccCCcC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN-------EKN-EVIVVDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVD   99 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~-------g~~-~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~dl~~~~~~~~d   99 (259)
                      -+|.|+|++|.+|.+++-.|+..       +.. +++.++++.+.......++...     ..+.+...|  .++++++|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~--ye~~kdaD  178 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDP--YEVFQDAE  178 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCC--HHHhCcCC
Confidence            48999999999999999999887       542 4788887655433221111110     122222222  12288999


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHH-hCC--eEEEEec
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR-VGA--RILLTST  147 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~--~~i~~Ss  147 (259)
                      +||.+||...  ....+..+.++.|....+.+.....+ ++.  .+|.+|-
T Consensus       179 iVVitAG~pr--kpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN  227 (444)
T PLN00112        179 WALLIGAKPR--GPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN  227 (444)
T ss_pred             EEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence            9999999753  23456788999999999999999998 455  7776664

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=97.81  E-value=0.0017  Score=47.11  Aligned_cols=140  Identities=21%  Similarity=0.138  Sum_probs=81.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecc--cCccc------------cC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD--VTEPL------------LI   96 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d--l~~~~------------~~   96 (259)
                      +..+|+|.||-|-+|++.++.+.++++- |..++.......+         .-.++..+  .++.+            .+
T Consensus         2 sagrVivYGGkGALGSacv~~Fkannyw-V~siDl~eNe~Ad---------~sI~V~~~~swtEQe~~v~~~vg~sL~ge   71 (236)
T KOG4022|consen    2 SAGRVIVYGGKGALGSACVEFFKANNYW-VLSIDLSENEQAD---------SSILVDGNKSWTEQEQSVLEQVGSSLQGE   71 (236)
T ss_pred             CCceEEEEcCcchHhHHHHHHHHhcCeE-EEEEeeccccccc---------ceEEecCCcchhHHHHHHHHHHHHhhccc
Confidence            4569999999999999999999999998 8877764332221         00111111  11111            45


Q ss_pred             CcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEE-ecceeecCCCCCCCCCCCcCCCC
Q 025022           97 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLT-STSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~-Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      ++|.||+.||-...     .....+.+.++...++...--...+..+-.  -++.+ +.....+                
T Consensus        72 kvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~----------------  135 (236)
T KOG4022|consen   72 KVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALG----------------  135 (236)
T ss_pred             ccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccC----------------
Confidence            79999998874322     111223344555444433322333333211  33333 3323333                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHH-HhCC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHR-QHGI  196 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~-~~~~  196 (259)
                      +.+..-.|+..|.+..++.+.++. +.|+
T Consensus       136 gTPgMIGYGMAKaAVHqLt~SLaak~SGl  164 (236)
T KOG4022|consen  136 GTPGMIGYGMAKAAVHQLTSSLAAKDSGL  164 (236)
T ss_pred             CCCcccchhHHHHHHHHHHHHhcccccCC
Confidence            444556899999999999998864 3444

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.80  E-value=0.00018  Score=59.79  Aligned_cols=105  Identities=23%  Similarity=0.296  Sum_probs=70.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC------------------------cchhhhccCCCceeE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------------------KDNLRKWIGHPRFEL   85 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------------------------~~~~~~~~~~~~~~~   85 (259)
                      +...+|+|.|+ |.+|.++++.|...|...+.+++...-..                        .+.+++....-.++.
T Consensus        22 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~  100 (339)
T PRK07688         22 LREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA  100 (339)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            56789999996 99999999999999987688888752100                        011222222234555


Q ss_pred             eecccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           86 IRHDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        86 ~~~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      +..+++...    +.++|+||.+..                 |...-..+.++|.+.++.+|+.++...+|
T Consensus       101 ~~~~~~~~~~~~~~~~~DlVid~~D-----------------n~~~r~~ln~~~~~~~iP~i~~~~~g~~G  154 (339)
T PRK07688        101 IVQDVTAEELEELVTGVDLIIDATD-----------------NFETRFIVNDAAQKYGIPWIYGACVGSYG  154 (339)
T ss_pred             EeccCCHHHHHHHHcCCCEEEEcCC-----------------CHHHHHHHHHHHHHhCCCEEEEeeeeeee
Confidence            556665433    677899988752                 22223357788888888889888766554

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=97.80  E-value=5.1e-05  Score=59.49  Aligned_cols=59  Identities=17%  Similarity=0.245  Sum_probs=40.2

Q ss_pred             cCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcCEEEEccC
Q 025022           39 GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQIYHLAC  106 (259)
Q Consensus        39 GatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d~vi~~a~  106 (259)
                      .++|+||.++++.|+++|++ |+++.+...     +...   .   ...+|+.+.+            ++++|++||+||
T Consensus        22 ~SSGgIG~AIA~~la~~Ga~-Vvlv~~~~~-----l~~~---~---~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAg   89 (227)
T TIGR02114        22 HSTGHLGKIITETFLSAGHE-VTLVTTKRA-----LKPE---P---HPNLSIREIETTKDLLITLKELVQEHDILIHSMA   89 (227)
T ss_pred             CcccHHHHHHHHHHHHCCCE-EEEEcChhh-----cccc---c---CCcceeecHHHHHHHHHHHHHHcCCCCEEEECCE
Confidence            46899999999999999999 887765211     1000   0   1234444433            467999999999


Q ss_pred             CCC
Q 025022          107 PAS  109 (259)
Q Consensus       107 ~~~  109 (259)
                      ...
T Consensus        90 v~d   92 (227)
T TIGR02114        90 VSD   92 (227)
T ss_pred             ecc
Confidence            754

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.72  E-value=0.00064  Score=55.79  Aligned_cols=110  Identities=16%  Similarity=0.195  Sum_probs=74.2

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccC------CCceeEeecccCccccCCcCEEEEccC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG------HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      ||.|.|+ |.+|..++..|+..+. .+++.++...+.......++..      ...+....+|.  .+++++|+||.+||
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y--~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDY--DDCADADIIVITAG   77 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCH--HHhCCCCEEEECCC
Confidence            5889997 9999999999998875 3588888755433221111111      11334444442  23789999999999


Q ss_pred             CCCccccccC-hhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          107 PASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       107 ~~~~~~~~~~-~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      .... ..... ..+.+..|....+.+...+.+++.  .+|.+|-
T Consensus        78 ~~~k-pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN  120 (307)
T cd05290          78 PSID-PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN  120 (307)
T ss_pred             CCCC-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            7532 11221 478889999999999999998876  5555553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.72  E-value=0.00016  Score=55.72  Aligned_cols=105  Identities=18%  Similarity=0.216  Sum_probs=67.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~   87 (259)
                      +...+|+|.| .|.+|.++++.|...|...+++++...-..                      .+.+++..+...++.+.
T Consensus        19 l~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~   97 (202)
T TIGR02356        19 LLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK   97 (202)
T ss_pred             hcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence            5678999999 689999999999999987688888652110                      01122222223344444


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      ..+.+..    +.++|+||.+..                 |...-..+.+.|++.++.+|+.+....+|
T Consensus        98 ~~i~~~~~~~~~~~~D~Vi~~~d-----------------~~~~r~~l~~~~~~~~ip~i~~~~~g~~G  149 (202)
T TIGR02356        98 ERVTAENLELLINNVDLVLDCTD-----------------NFATRYLINDACVALGTPLISAAVVGFGG  149 (202)
T ss_pred             hcCCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCeE
Confidence            4444332    678999998752                 12223457788888888888887655443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.71  E-value=0.00035  Score=58.37  Aligned_cols=98  Identities=14%  Similarity=0.208  Sum_probs=58.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccC-CC---ceeEeecccCccccCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIG-HP---RFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      +++|+|+||||++|+.+++.|.+. +.+ ++++.++.. ..+.+..... ..   ...+...|  +....++|+||.+..
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~e-lv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~vD~Vf~alP   77 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVE-IVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLD--PEILAGADVVFLALP   77 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCce-EEEEECccc-cCcchHHhCcccccccCceeecCC--HHHhcCCCEEEECCC
Confidence            479999999999999999999987 455 666555322 2222222111 00   11111122  112467999988663


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceee
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~  151 (259)
                      .                  .....++..+.+.|+++|=.|+..-+
T Consensus        78 ~------------------~~~~~~v~~a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         78 H------------------GVSMDLAPQLLEAGVKVIDLSADFRL  104 (343)
T ss_pred             c------------------HHHHHHHHHHHhCCCEEEECCcccCC
Confidence            2                  12235666666677788888877644

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.71  E-value=8.6e-05  Score=60.52  Aligned_cols=77  Identities=10%  Similarity=0.088  Sum_probs=51.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC---CCCcchhhhccC-CCceeEeecccCccc-----cCCcCE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---TGSKDNLRKWIG-HPRFELIRHDVTEPL-----LIEVDQ  100 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~---~~~~~~~~~~~~-~~~~~~~~~dl~~~~-----~~~~d~  100 (259)
                      +++++++|+|+ |.+|++++..|.+.|...|+++.|+.   .+..+..+++.. ...+....+|+.+.+     ....|+
T Consensus       124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            56789999998 89999999999999998788888864   222222221111 123344556666543     456899


Q ss_pred             EEEccCC
Q 025022          101 IYHLACP  107 (259)
Q Consensus       101 vi~~a~~  107 (259)
                      +||+-..
T Consensus       203 lINaTp~  209 (289)
T PRK12548        203 LVNATLV  209 (289)
T ss_pred             EEEeCCC
Confidence            9997754

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.70  E-value=0.0002  Score=59.64  Aligned_cols=69  Identities=13%  Similarity=0.176  Sum_probs=44.2

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCe--EEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNE--VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      +|.|.||||++|+.|++.|.++++..  +..+.+..... ..+.  +  .+.+....|+....+.++|++|.+++.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g-~~~~--~--~~~~~~~~~~~~~~~~~~D~v~~a~g~   71 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAG-RKVT--F--KGKELEVNEAKIESFEGIDIALFSAGG   71 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCC-Ceee--e--CCeeEEEEeCChHHhcCCCEEEECCCH
Confidence            58999999999999999999987772  23333432211 1111  1  123445555544446789999998863

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.70  E-value=0.00045  Score=56.91  Aligned_cols=110  Identities=13%  Similarity=0.072  Sum_probs=71.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC-----CceeEe-ecccCccccCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELI-RHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~-~~dl~~~~~~~~d~vi~~a  105 (259)
                      +|||.|+|+ |.+|..++..+...|..+|++++++..............     ....+. ..|.  .++.++|+||.++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~--~~~~~aDiVii~~   78 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY--EDIAGSDVVVITA   78 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH--HHHCCCCEEEECC
Confidence            479999998 999999999999887424999998654432211111110     111222 1333  2378999999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      |...  ....+..+.+..|......+++.+.+...  .+|.+|
T Consensus        79 ~~p~--~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t  119 (307)
T PRK06223         79 GVPR--KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVT  119 (307)
T ss_pred             CCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            8653  22334556677889888999888877754  455554

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.69  E-value=0.00035  Score=58.16  Aligned_cols=105  Identities=21%  Similarity=0.271  Sum_probs=68.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC------------------------cchhhhccCCCceeE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------------------KDNLRKWIGHPRFEL   85 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------------------------~~~~~~~~~~~~~~~   85 (259)
                      +++++|+|.|+ |.+|.++++.|...|...+.++++..-..                        .+.+++......++.
T Consensus        22 L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~  100 (338)
T PRK12475         22 IREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP  100 (338)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence            56789999996 77999999999999987688888753110                        012222223334555


Q ss_pred             eecccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           86 IRHDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        86 ~~~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      +..|++...    +.++|+||.+..                 |...-..+.+.|.+.++.+|+.+....+|
T Consensus       101 ~~~~~~~~~~~~~~~~~DlVid~~D-----------------~~~~r~~in~~~~~~~ip~i~~~~~g~~G  154 (338)
T PRK12475        101 VVTDVTVEELEELVKEVDLIIDATD-----------------NFDTRLLINDLSQKYNIPWIYGGCVGSYG  154 (338)
T ss_pred             EeccCCHHHHHHHhcCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecccEE
Confidence            666665332    678999998752                 11122346678888888888887665444

>PRK05442 malate dehydrogenase; Provisional

Probab=97.66  E-value=0.00074  Score=55.86  Aligned_cols=112  Identities=12%  Similarity=0.070  Sum_probs=74.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC------eEEEEcCCCCCC-cchhhhccCC------CceeEeecccCccccCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYFTGS-KDNLRKWIGH------PRFELIRHDVTEPLLIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~------~V~~~~r~~~~~-~~~~~~~~~~------~~~~~~~~dl~~~~~~~~   98 (259)
                      .+||.|+|++|.+|+.++..|+..+..      +++.++.++... .......+.+      ..+.....|  .+++.+.
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~--y~~~~da   81 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDP--NVAFKDA   81 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecCh--HHHhCCC
Confidence            469999999999999999999886642      488888754321 1111111110      122222212  1227899


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C--eEEEEec
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST  147 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~~Ss  147 (259)
                      |+||.+||...  ....+..+.+..|....+.+.....++. .  .+|.+|-
T Consensus        82 DiVVitaG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  131 (326)
T PRK05442         82 DVALLVGARPR--GPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN  131 (326)
T ss_pred             CEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            99999999653  2345678889999999999999998844 3  6776664

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.66  E-value=0.00051  Score=57.87  Aligned_cols=112  Identities=12%  Similarity=0.070  Sum_probs=73.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCe------EEEE--cCCCCCCcchhhhccC-----CCceeEeecccCccccCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNE------VIVV--DNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~------V~~~--~r~~~~~~~~~~~~~~-----~~~~~~~~~dl~~~~~~~~   98 (259)
                      .-||.|+|++|.+|.+++-.|+..+.-.      ++.+  +++.+.......++..     ...+.+...|  ..+++++
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~--y~~~kda  121 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDP--YEVFEDA  121 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCC--HHHhCCC
Confidence            3599999999999999999999887532      2233  4433332211111111     0122222222  1238899


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C--eEEEEec
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST  147 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~~Ss  147 (259)
                      |+||.+||...  ....+..+.+..|....+.+.....++. .  .+|.+|-
T Consensus       122 DIVVitAG~pr--kpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN  171 (387)
T TIGR01757       122 DWALLIGAKPR--GPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN  171 (387)
T ss_pred             CEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            99999999753  2345677889999999999999998854 3  6776664

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.65  E-value=0.00015  Score=54.84  Aligned_cols=71  Identities=21%  Similarity=0.326  Sum_probs=42.6

Q ss_pred             CCCEEEEEcC----------------chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc
Q 025022           31 SNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL   94 (259)
Q Consensus        31 ~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~   94 (259)
                      .+++||||+|                ||-+|.+|++++..+|+. |+.+.....-..        ...+..+...-.++-
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~-V~li~g~~~~~~--------p~~~~~i~v~sa~em   72 (185)
T PF04127_consen    2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAE-VTLIHGPSSLPP--------PPGVKVIRVESAEEM   72 (185)
T ss_dssp             TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-E-EEEEE-TTS------------TTEEEEE-SSHHHH
T ss_pred             CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCE-EEEEecCccccc--------cccceEEEecchhhh
Confidence            4677777754                688999999999999999 887776422110        135555554332222


Q ss_pred             -------cCCcCEEEEccCCCCc
Q 025022           95 -------LIEVDQIYHLACPASP  110 (259)
Q Consensus        95 -------~~~~d~vi~~a~~~~~  110 (259)
                             +.++|++|++|++...
T Consensus        73 ~~~~~~~~~~~Di~I~aAAVsDf   95 (185)
T PF04127_consen   73 LEAVKELLPSADIIIMAAAVSDF   95 (185)
T ss_dssp             HHHHHHHGGGGSEEEE-SB--SE
T ss_pred             hhhhccccCcceeEEEecchhhe
Confidence                   5678999999998764

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=97.64  E-value=0.00015  Score=61.28  Aligned_cols=100  Identities=13%  Similarity=0.172  Sum_probs=62.1

Q ss_pred             ccCCCEEEEEcC----------------chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCc
Q 025022           29 FQSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE   92 (259)
Q Consensus        29 ~~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~   92 (259)
                      ++.+++++||||                ||.+|.+++++|..+|++ |+++.+......        ...+.  ..|+.+
T Consensus       182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~-V~~~~g~~~~~~--------~~~~~--~~~v~~  250 (390)
T TIGR00521       182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGAD-VTLITGPVSLLT--------PPGVK--SIKVST  250 (390)
T ss_pred             ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCE-EEEeCCCCccCC--------CCCcE--EEEecc
Confidence            367899999998                367999999999999999 888776432210        01221  223322


Q ss_pred             cc----------cCCcCEEEEccCCCCcccccc------ChhHHHHHhhhhHHHHHHHHHHhC
Q 025022           93 PL----------LIEVDQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG  139 (259)
Q Consensus        93 ~~----------~~~~d~vi~~a~~~~~~~~~~------~~~~~~~~n~~~~~~l~~~~~~~~  139 (259)
                      .+          ..++|++|++||.........      .....+..|..-+..++...++..
T Consensus       251 ~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~  313 (390)
T TIGR00521       251 AEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK  313 (390)
T ss_pred             HHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence            21          357899999999875422110      011223355666666777666543

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.64  E-value=0.00086  Score=55.22  Aligned_cols=111  Identities=13%  Similarity=0.082  Sum_probs=75.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccCC----CceeEee-cccCccccCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGH----PRFELIR-HDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~-~dl~~~~~~~~d~vi~~a  105 (259)
                      .+||.|+|+ |.+|..++..|+..+.. ++++++.+.........++...    ....... +|..  +++++|+||.+|
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~--~~~~adivvita   79 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS--VTANSKVVIVTA   79 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH--HhCCCCEEEECC
Confidence            369999996 99999999999888753 5888887554322111111100    1112222 3433  278999999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      |....  ...+..+.+..|....+.+.+..++++.  .+|.+|-
T Consensus        80 G~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  121 (312)
T cd05293          80 GARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN  121 (312)
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence            97542  2345678889999999999999988865  6666663

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=97.64  E-value=0.00077  Score=51.66  Aligned_cols=105  Identities=16%  Similarity=0.307  Sum_probs=68.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~   87 (259)
                      +++.+|+|.|+.| +|.++++.|...|...+.+++...-..                      .+.+++..+...++...
T Consensus        19 L~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~   97 (197)
T cd01492          19 LRSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT   97 (197)
T ss_pred             HHhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence            4578999999655 999999999999998788887542110                      01122333333455555


Q ss_pred             cccCccc---cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           88 HDVTEPL---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        88 ~dl~~~~---~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      ..+.+..   +.++|+||.+...                 ......+-+.|++.++.+|+.++...+|
T Consensus        98 ~~~~~~~~~~~~~~dvVi~~~~~-----------------~~~~~~ln~~c~~~~ip~i~~~~~G~~G  148 (197)
T cd01492          98 DDISEKPEEFFSQFDVVVATELS-----------------RAELVKINELCRKLGVKFYATGVHGLFG  148 (197)
T ss_pred             cCccccHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEEecCCEE
Confidence            4443221   6789999876421                 1222356688899988889888876555

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.63  E-value=0.0011  Score=54.48  Aligned_cols=109  Identities=16%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccC----CCceeEeecccCccccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      |+|.|.|+ |.+|..++..|+..|. .+|++++++..........+..    .........|..  ++.++|++|.+++.
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~--~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYA--DCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHH--HhCCCCEEEEccCC
Confidence            58999997 9999999999999984 3488888865432211111110    012233333432  27899999999986


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ..  ....+..+....|......+++.+.+.+.  .++..+
T Consensus        78 ~~--~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          78 NQ--KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             CC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            53  22345667788899999999999888765  555554

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.61  E-value=0.0012  Score=54.58  Aligned_cols=112  Identities=12%  Similarity=0.117  Sum_probs=73.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc-hhhh--ccC--CCceeEee-cccCccccCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRK--WIG--HPRFELIR-HDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-~~~~--~~~--~~~~~~~~-~dl~~~~~~~~d~vi~~  104 (259)
                      +.+||.|+|| |.+|+.++..|...|..++++++.+...... .+..  ...  .....+.. .|..  ++.++|+||.+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~--~l~~ADiVVit   80 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE--DIKDSDVVVIT   80 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH--HhCCCCEEEEC
Confidence            4579999997 9999999999988884448888886543221 1100  000  01122221 2322  37899999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      +|....  ...+..+.+..|......+++.+.+...  .+|.+|-
T Consensus        81 ag~~~~--~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN  123 (319)
T PTZ00117         81 AGVQRK--EEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN  123 (319)
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            986542  2345677888899989999998888765  5666554

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.61  E-value=0.00084  Score=55.13  Aligned_cols=110  Identities=15%  Similarity=0.109  Sum_probs=72.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC-----CceeE-eecccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFEL-IRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~-~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |+|.|.|+ |++|..++..|+..|...|++++..............+.     ....+ ...|+.+  ..++|+||-++|
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~--~~~aDiVIitag   78 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD--TANSDIVVITAG   78 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH--hCCCCEEEEcCC
Confidence            68999996 999999999999988623999888544322111111110     01112 1244432  678999999998


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      ....  ...+..+.+..|....+.+++.+.+++.  .+|.+|-
T Consensus        79 ~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN  119 (305)
T TIGR01763        79 LPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN  119 (305)
T ss_pred             CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            6532  2334566888899999999998887755  6666664

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.58  E-value=0.00069  Score=48.61  Aligned_cols=103  Identities=19%  Similarity=0.328  Sum_probs=66.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEeecc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIRHD   89 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~d   89 (259)
                      .++|+|.|+ |.+|..+++.|...|...+.+++...-...                      +.+.+..+..+++.+..+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            468999995 889999999999999987888875421110                      111112223355566666


Q ss_pred             cCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           90 VTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        90 l~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      +.+..    +.++|+||.+...                 ...-..+.+.|++.+..+|+.++...+|
T Consensus        81 ~~~~~~~~~~~~~d~vi~~~d~-----------------~~~~~~l~~~~~~~~~p~i~~~~~g~~G  130 (135)
T PF00899_consen   81 IDEENIEELLKDYDIVIDCVDS-----------------LAARLLLNEICREYGIPFIDAGVNGFYG  130 (135)
T ss_dssp             CSHHHHHHHHHTSSEEEEESSS-----------------HHHHHHHHHHHHHTT-EEEEEEEETTEE
T ss_pred             cccccccccccCCCEEEEecCC-----------------HHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence            64333    5689999987531                 2233457778999988888887654443

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.58  E-value=0.0021  Score=53.14  Aligned_cols=114  Identities=13%  Similarity=0.080  Sum_probs=74.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc-hhhh--c--cCCCceeEee-cccCccccCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRK--W--IGHPRFELIR-HDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-~~~~--~--~~~~~~~~~~-~dl~~~~~~~~d~vi~~  104 (259)
                      +.+||.|+| +|.+|..++..++..|...+++++.++..... .+..  .  ......++.. .|.  +++.++|+||.+
T Consensus         5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~--~~l~~aDiVI~t   81 (321)
T PTZ00082          5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY--EDIAGSDVVIVT   81 (321)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH--HHhCCCCEEEEC
Confidence            457999999 59999999999999996448888886653211 1111  0  0011223332 444  247899999999


Q ss_pred             cCCCCcccc---ccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          105 ACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       105 a~~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      +|.......   +.+..+.+..|....+.+++.+.+...  .+|.+|-
T Consensus        82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN  129 (321)
T PTZ00082         82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN  129 (321)
T ss_pred             CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            987542111   014566778888888888888887765  5665553

>PLN02602 lactate dehydrogenase

Probab=97.58  E-value=0.0013  Score=54.86  Aligned_cols=109  Identities=15%  Similarity=0.172  Sum_probs=74.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccC----CCceeEee-cccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIG----HPRFELIR-HDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~-~dl~~~~~~~~d~vi~~a~  106 (259)
                      +||.|+|+ |.+|..++..|+..+.. +++.++.+.........++..    .....+.. +|..  +++++|+||-+||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~--~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA--VTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH--HhCCCCEEEECCC
Confidence            69999995 99999999999888753 588888765432211111111    01222222 2322  2789999999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ....  ...+..+.+..|....+.+++..++++.  .+|.+|
T Consensus       115 ~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        115 ARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            7542  2345678889999999999999988865  666666

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.58  E-value=0.00057  Score=57.15  Aligned_cols=100  Identities=13%  Similarity=0.193  Sum_probs=58.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhhhccCC-C---ceeEeecccCccccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGH-P---RFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~~~-~---~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      |+|.|+||||++|+.+++.|.+....+++.+ .++.. ....+...... .   ...+...|..+. ..++|+||.+.+.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~s-agk~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~DvVf~alP~   78 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRES-AGKPVSEVHPHLRGLVDLNLEPIDEEEI-AEDADVVFLALPH   78 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchh-cCCChHHhCccccccCCceeecCCHHHh-hcCCCEEEECCCc
Confidence            5899999999999999999998743336644 43321 11112211110 0   111221222111 2479999987742


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      .                  ....++..+.+.|+++|=.|+..-+.
T Consensus        79 ~------------------~s~~~~~~~~~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        79 G------------------VSAELAPELLAAGVKVIDLSADFRLK  105 (346)
T ss_pred             h------------------HHHHHHHHHHhCCCEEEeCChhhhcC
Confidence            1                  23456666667778999888875443

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=97.56  E-value=0.00058  Score=58.50  Aligned_cols=111  Identities=10%  Similarity=0.030  Sum_probs=70.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc---CCC---eEEEEcCCCCC-Ccchhhhcc-----CC-CceeEeecccCccccCCcC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN---EKN---EVIVVDNYFTG-SKDNLRKWI-----GH-PRFELIRHDVTEPLLIEVD   99 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~---g~~---~V~~~~r~~~~-~~~~~~~~~-----~~-~~~~~~~~dl~~~~~~~~d   99 (259)
                      -+|+||||+|.||.+|+-.+.+=   |.+   .++.++..... ..+.....+     .. ..+.....|  ..+++++|
T Consensus       124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~--~ea~~daD  201 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDL--DVAFKDAH  201 (452)
T ss_pred             eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECC--HHHhCCCC
Confidence            57999999999999999988762   422   24555542111 111111111     10 123333221  23388999


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC---eEEEEec
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTST  147 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~~Ss  147 (259)
                      ++|.+||...  ....+..+.++.|....+.+.+...++..   +++.+.|
T Consensus       202 vvIitag~pr--k~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t  250 (452)
T cd05295         202 VIVLLDDFLI--KEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR  250 (452)
T ss_pred             EEEECCCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            9999999753  23456778899999999999999887653   6666664

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.56  E-value=0.0013  Score=50.45  Aligned_cols=105  Identities=12%  Similarity=0.234  Sum_probs=68.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC--Cc----------------------chhhhccCCCceeE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--SK----------------------DNLRKWIGHPRFEL   85 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~----------------------~~~~~~~~~~~~~~   85 (259)
                      .++.+|+|.|.+| +|.++++.|...|..++++++...-.  +.                      +.+++..+..+++.
T Consensus        17 L~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~   95 (198)
T cd01485          17 LRSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI   95 (198)
T ss_pred             HhhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence            4568999999766 99999999999999878888754211  00                      11222223334555


Q ss_pred             eecccCc--cc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           86 IRHDVTE--PL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        86 ~~~dl~~--~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      +..++.+  ..    +.++|+||.+..                 +......+-+.|+++++.+|+.++.+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~dvVi~~~d-----------------~~~~~~~ln~~c~~~~ip~i~~~~~G~~G  151 (198)
T cd01485          96 VEEDSLSNDSNIEEYLQKFTLVIATEE-----------------NYERTAKVNDVCRKHHIPFISCATYGLIG  151 (198)
T ss_pred             EecccccchhhHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence            5554431  11    668898886532                 12222346688999988999998877666

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.56  E-value=0.00054  Score=57.09  Aligned_cols=96  Identities=14%  Similarity=0.125  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +.++|.|.||||++|..|++.|.++++.  .+..+..... ....+..    .+.+....++....+.++|+||.+++..
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs-aGk~~~~----~~~~~~v~~~~~~~~~~~D~vf~a~p~~   80 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS-AGKKVTF----EGRDYTVEELTEDSFDGVDIALFSAGGS   80 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC-CCCeeee----cCceeEEEeCCHHHHcCCCEEEECCCcH
Confidence            4579999999999999999999987764  2333332211 1111111    1122222233333356899999877522


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                        ....++..+.+.|+++|=.|+..
T Consensus        81 ------------------~s~~~~~~~~~~g~~VIDlS~~f  103 (344)
T PLN02383         81 ------------------ISKKFGPIAVDKGAVVVDNSSAF  103 (344)
T ss_pred             ------------------HHHHHHHHHHhCCCEEEECCchh
Confidence                              11234444445566777777655

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=97.54  E-value=0.00096  Score=55.77  Aligned_cols=101  Identities=15%  Similarity=0.166  Sum_probs=55.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC------CCc-ee-EeecccCccccCCcCEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG------HPR-FE-LIRHDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~------~~~-~~-~~~~dl~~~~~~~~d~vi~~  104 (259)
                      ++|.|+|++|++|++|++.|.++...++..+..+............+      ... +. ...-++......++|+|+.+
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            58999999999999999999887643366664332211111211110      000 11 01111111124679999887


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceee
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~  151 (259)
                      ....                  ....+...+.+.|+++|-.|+..-+
T Consensus        81 ~p~~------------------~s~~~~~~~~~~G~~VIDlsg~fR~  109 (341)
T TIGR00978        81 LPSE------------------VAEEVEPKLAEAGKPVFSNASNHRM  109 (341)
T ss_pred             CCHH------------------HHHHHHHHHHHCCCEEEECChhhcc
Confidence            6311                  1123445666678888888876544

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.00019  Score=57.95  Aligned_cols=75  Identities=16%  Similarity=0.282  Sum_probs=50.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeeccc---CccccCCcCEEEEccCCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV---TEPLLIEVDQIYHLACPAS  109 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl---~~~~~~~~d~vi~~a~~~~  109 (259)
                      ..++|.|||||.|..++++|..+|.+ -....|+..+.. .+...+. +.+..+.+..   .+.-..+..+|+||+|+..
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~g~~-~aLAgRs~~kl~-~l~~~LG-~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt   83 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLAREGLT-AALAGRSSAKLD-ALRASLG-PEAAVFPLGVPAALEAMASRTQVVLNCVGPYT   83 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHcCCc-hhhccCCHHHHH-HHHHhcC-ccccccCCCCHHHHHHHHhcceEEEecccccc
Confidence            46999999999999999999999998 666667543322 2222221 2233333332   1222678999999999876


Q ss_pred             c
Q 025022          110 P  110 (259)
Q Consensus       110 ~  110 (259)
                      .
T Consensus        84 ~   84 (382)
T COG3268          84 R   84 (382)
T ss_pred             c
Confidence            4

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.47  E-value=0.0018  Score=53.76  Aligned_cols=97  Identities=18%  Similarity=0.219  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +.++|.|.||||++|+.+++.|.++.+  .++..+..... ....+.  +....+.+.  ++.+.++.++|++|.+++..
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s-aG~~~~--~~~~~~~v~--~~~~~~~~~~Dvvf~a~p~~   77 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEES-AGETLR--FGGKSVTVQ--DAAEFDWSQAQLAFFVAGRE   77 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc-CCceEE--ECCcceEEE--eCchhhccCCCEEEECCCHH
Confidence            467999999999999999999998533  34555544321 111111  111122222  44333346899998876421


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEeccee
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~  150 (259)
                                        ....++..+.+.|+++|=.|+..-
T Consensus        78 ------------------~s~~~~~~~~~~g~~VIDlS~~fR  101 (336)
T PRK08040         78 ------------------ASAAYAEEATNAGCLVIDSSGLFA  101 (336)
T ss_pred             ------------------HHHHHHHHHHHCCCEEEECChHhc
Confidence                              123455555556667777776653

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.46  E-value=0.0028  Score=45.92  Aligned_cols=99  Identities=15%  Similarity=0.155  Sum_probs=64.0

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEeecccC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIRHDVT   91 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~dl~   91 (259)
                      +|+|.|. |.+|.++++.|...|...+.+++...-...                      +.+++..+...++.+..++.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            5889996 999999999999999976888875421110                      11111222233444554444


Q ss_pred             ccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEeccee
Q 025022           92 EPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (259)
Q Consensus        92 ~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~  150 (259)
                      +..    +.++|+||.+...                 ......+.+.|++.++.+|..++...
T Consensus        80 ~~~~~~~~~~~diVi~~~d~-----------------~~~~~~l~~~~~~~~i~~i~~~~~g~  125 (143)
T cd01483          80 EDNLDDFLDGVDLVIDAIDN-----------------IAVRRALNRACKELGIPVIDAGGLGL  125 (143)
T ss_pred             hhhHHHHhcCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence            432    6789999987631                 22335677889998888888777643

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.44  E-value=0.0011  Score=57.72  Aligned_cols=77  Identities=19%  Similarity=0.089  Sum_probs=50.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccC-CcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-EVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~-~~d~vi~~a~~~  108 (259)
                      +.+++++|+|++| +|.+.++.|++.|++ |++.++.........+.+ ...++++..+........ ++|.||...|..
T Consensus         3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~-V~~~d~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~   79 (447)
T PRK02472          3 YQNKKVLVLGLAK-SGYAAAKLLHKLGAN-VTVNDGKPFSENPEAQEL-LEEGIKVICGSHPLELLDEDFDLMVKNPGIP   79 (447)
T ss_pred             cCCCEEEEEeeCH-HHHHHHHHHHHCCCE-EEEEcCCCccchhHHHHH-HhcCCEEEeCCCCHHHhcCcCCEEEECCCCC
Confidence            4578999999987 999999999999998 998886543322222221 122455544332222123 489999998865


Q ss_pred             C
Q 025022          109 S  109 (259)
Q Consensus       109 ~  109 (259)
                      .
T Consensus        80 ~   80 (447)
T PRK02472         80 Y   80 (447)
T ss_pred             C
Confidence            3

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=97.42  E-value=0.0019  Score=52.25  Aligned_cols=105  Identities=13%  Similarity=0.189  Sum_probs=71.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~   87 (259)
                      +...+|+|.|. |.+|..+++.|...|...+.+++...-..                      .++++++.+..+++.+.
T Consensus        17 L~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~   95 (286)
T cd01491          17 LQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVST   95 (286)
T ss_pred             HhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence            45679999995 78999999999999998788887542111                      11233333334566666


Q ss_pred             cccCccccCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           88 HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        88 ~dl~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      .++....+.++|+||.+..                 +......+-++|+++++.+|...+...+|
T Consensus        96 ~~~~~~~l~~fdvVV~~~~-----------------~~~~~~~in~~c~~~~ipfI~a~~~G~~G  143 (286)
T cd01491          96 GPLTTDELLKFQVVVLTDA-----------------SLEDQLKINEFCHSPGIKFISADTRGLFG  143 (286)
T ss_pred             ccCCHHHHhcCCEEEEecC-----------------CHHHHHHHHHHHHHcCCEEEEEeccccEE
Confidence            6654444788999987642                 12223456788998888999888876654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.42  E-value=0.0022  Score=50.92  Aligned_cols=102  Identities=16%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~   87 (259)
                      .+..+|+|.|+ |.+|..+++.|...|...+++++...-..                      .+.+++..+...++.+.
T Consensus        30 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~  108 (245)
T PRK05690         30 LKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN  108 (245)
T ss_pred             hcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            56789999997 99999999999999987677777542111                      01122222223444555


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      ..+.+..    +.++|+||.+..                 |...-..+.++|.++++.+|+.++..
T Consensus       109 ~~i~~~~~~~~~~~~DiVi~~~D-----------------~~~~r~~ln~~~~~~~ip~v~~~~~g  157 (245)
T PRK05690        109 ARLDDDELAALIAGHDLVLDCTD-----------------NVATRNQLNRACFAAKKPLVSGAAIR  157 (245)
T ss_pred             ccCCHHHHHHHHhcCCEEEecCC-----------------CHHHHHHHHHHHHHhCCEEEEeeecc
Confidence            5554432    578999998752                 12222356788888888888765543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.41  E-value=0.0011  Score=52.01  Aligned_cols=69  Identities=20%  Similarity=0.337  Sum_probs=52.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a~  106 (259)
                      |+++|.|+ |.+|..+++.|.++|+. |+++.+++....+....   ......+.+|-++++      ..++|+++-+.+
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~~-Vv~Id~d~~~~~~~~~~---~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGHN-VVLIDRDEERVEEFLAD---ELDTHVVIGDATDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCCc-eEEEEcCHHHHHHHhhh---hcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence            67888885 99999999999999999 99998854433322221   236788899999988      668999986654

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.41  E-value=0.0023  Score=51.45  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=71.5

Q ss_pred             EEEEcCchhhhHHHHHHHHhcC----CCeEEEEcCCCCCCcchhhhc---cCCC-ceeEeecccCccccCCcCEEEEccC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENE----KNEVIVVDNYFTGSKDNLRKW---IGHP-RFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g----~~~V~~~~r~~~~~~~~~~~~---~~~~-~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |.|+|++|.+|..++..|+..|    .+ +++++++.........++   .... ..++...+-..+++.++|+||.+++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~e-l~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIE-LVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceE-EEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence            5799999999999999999888    44 888887654332211111   1111 1222222211233889999999998


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ....  ...........|....+.+++.+++...  .+|.+|
T Consensus        80 ~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t  119 (263)
T cd00650          80 VGRK--PGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS  119 (263)
T ss_pred             CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            6542  2334556777899999999999988765  666555

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.39  E-value=0.0018  Score=50.87  Aligned_cols=104  Identities=16%  Similarity=0.159  Sum_probs=66.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~   87 (259)
                      +...+|+|.| .|.+|.++++.|...|...+++++...-..                      .+.+++..+..+++.+.
T Consensus        19 L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~   97 (228)
T cd00757          19 LKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN   97 (228)
T ss_pred             HhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence            4578999999 589999999999999988777776432110                      01111222223455555


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceee
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~  151 (259)
                      ..+....    +.++|+||.+...                 ...-..+.+.|.+.++.+|+.+....+
T Consensus        98 ~~i~~~~~~~~~~~~DvVi~~~d~-----------------~~~r~~l~~~~~~~~ip~i~~g~~g~~  148 (228)
T cd00757          98 ERLDAENAEELIAGYDLVLDCTDN-----------------FATRYLINDACVKLGKPLVSGAVLGFE  148 (228)
T ss_pred             ceeCHHHHHHHHhCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCCCEEEEEeccCE
Confidence            5553322    5679999987631                 112235778888888888887765433

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK04148 hypothetical protein; Provisional

Probab=97.35  E-value=0.0011  Score=46.94  Aligned_cols=85  Identities=25%  Similarity=0.302  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---cCCcCEEEEccCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---LIEVDQIYHLACP  107 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---~~~~d~vi~~a~~  107 (259)
                      +++++++.| .| -|.+++..|.+.|++ |++++.++.... ..+.    ..++.+.+|+.+.+   -.+.|.|+..=- 
T Consensus        16 ~~~kileIG-~G-fG~~vA~~L~~~G~~-ViaIDi~~~aV~-~a~~----~~~~~v~dDlf~p~~~~y~~a~liysirp-   86 (134)
T PRK04148         16 KNKKIVELG-IG-FYFKVAKKLKESGFD-VIVIDINEKAVE-KAKK----LGLNAFVDDLFNPNLEIYKNAKLIYSIRP-   86 (134)
T ss_pred             cCCEEEEEE-ec-CCHHHHHHHHHCCCE-EEEEECCHHHHH-HHHH----hCCeEEECcCCCCCHHHHhcCCEEEEeCC-
Confidence            457899999 46 888999999999998 999998654321 1221    36789999999988   467888875421 


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA  140 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  140 (259)
                               +.+       ....+++.+++.+.
T Consensus        87 ---------p~e-------l~~~~~~la~~~~~  103 (134)
T PRK04148         87 ---------PRD-------LQPFILELAKKINV  103 (134)
T ss_pred             ---------CHH-------HHHHHHHHHHHcCC
Confidence                     222       23478899999998

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.35  E-value=0.0022  Score=52.57  Aligned_cols=108  Identities=19%  Similarity=0.165  Sum_probs=71.6

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccC---C-CceeEee-cccCccccCCcCEEEEccCCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG---H-PRFELIR-HDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~---~-~~~~~~~-~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      |.|.|+ |++|..++-.|+..|. .++++++++.........++..   . ....... .|  ..++.++|+||.++|..
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~--~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD--YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC--HHHhCCCCEEEEcCCCC
Confidence            467885 8899999999998884 2488888865432211111111   0 1122222 22  22488999999999975


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      .  ....+..+.+..|....+.+++..++++.  .+|.+|-
T Consensus        78 ~--~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          78 R--KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             C--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            4  23445677888999999999999988865  6666663

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.34  E-value=0.0012  Score=50.81  Aligned_cols=73  Identities=15%  Similarity=0.292  Sum_probs=52.7

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      .+.++++|+|.|| |-+|...++.|++.|+. |+++.+..   ...+........+.+...++...++.++|+||-+.
T Consensus         6 l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~-V~VIs~~~---~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT   78 (202)
T PRK06718          6 IDLSNKRVVIVGG-GKVAGRRAITLLKYGAH-IVVISPEL---TENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT   78 (202)
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHHCCCe-EEEEcCCC---CHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC
Confidence            3467899999997 99999999999999988 88886532   22223333334567766666666678899888654

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.31  E-value=0.0036  Score=49.58  Aligned_cols=105  Identities=15%  Similarity=0.119  Sum_probs=65.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~   87 (259)
                      ++..+|+|.|+ |.+|..+++.|...|...+++++...-...                      +.+++..+...++.+.
T Consensus        22 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~  100 (240)
T TIGR02355        22 LKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN  100 (240)
T ss_pred             HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            45679999995 889999999999999887888776432111                      1111122222344444


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      ..+....    +.++|+||.+..                 |...-..+-++|.+.++.+|+.++...+|
T Consensus       101 ~~i~~~~~~~~~~~~DlVvd~~D-----------------~~~~r~~ln~~~~~~~ip~v~~~~~g~~G  152 (240)
T TIGR02355       101 AKLDDAELAALIAEHDIVVDCTD-----------------NVEVRNQLNRQCFAAKVPLVSGAAIRMEG  152 (240)
T ss_pred             ccCCHHHHHHHhhcCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence            3333322    567898888652                 12223456788888888888876554333

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.31  E-value=0.0014  Score=53.66  Aligned_cols=100  Identities=14%  Similarity=0.171  Sum_probs=60.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCc----eeEeecccCccccCCcCEEEEccCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR----FELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ++||.|.||+||.|..|++.|..+..-++.....+.. ....+.+...+.+    +.+...|.......+||+||.+--.
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~-~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh   80 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRER-AGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH   80 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhh-cCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence            5799999999999999999999987655666554432 2222222222111    2222333333335679999986521


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEeccee
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~  150 (259)
                      .                  ....++......++++|=+|+..-
T Consensus        81 g------------------~s~~~v~~l~~~g~~VIDLSadfR  105 (349)
T COG0002          81 G------------------VSAELVPELLEAGCKVIDLSADFR  105 (349)
T ss_pred             h------------------hHHHHHHHHHhCCCeEEECCcccc
Confidence            1                  112455555566668888887653

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.31  E-value=0.0025  Score=49.16  Aligned_cols=73  Identities=12%  Similarity=0.115  Sum_probs=55.2

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      .++++++|+|.|| |.+|..-++.|++.|.. |+++.....   +.+..+....++.++..+....++.+++.||-+-
T Consensus         5 l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~-VtVvsp~~~---~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at   77 (205)
T TIGR01470         5 ANLEGRAVLVVGG-GDVALRKARLLLKAGAQ-LRVIAEELE---SELTLLAEQGGITWLARCFDADILEGAFLVIAAT   77 (205)
T ss_pred             EEcCCCeEEEECc-CHHHHHHHHHHHHCCCE-EEEEcCCCC---HHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECC
Confidence            3467899999996 99999999999999998 888875332   2333333335789998888776688888887543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08328 hypothetical protein; Provisional

Probab=97.23  E-value=0.0018  Score=50.98  Aligned_cols=105  Identities=17%  Similarity=0.192  Sum_probs=65.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc-----------------------chhhhccCCCceeEe
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-----------------------DNLRKWIGHPRFELI   86 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-----------------------~~~~~~~~~~~~~~~   86 (259)
                      ..+.+|+|.|+ |.+|.++++.|...|...+++++...-...                       ..+++..+...++.+
T Consensus        25 L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~  103 (231)
T PRK08328         25 LKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF  103 (231)
T ss_pred             HhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence            45679999995 889999999999999887888875421100                       011111122233334


Q ss_pred             ecccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           87 RHDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        87 ~~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      ...+.+..    +.++|+||.+...                 ...-..+.++|++.++.+|+.++...+|
T Consensus       104 ~~~~~~~~~~~~l~~~D~Vid~~d~-----------------~~~r~~l~~~~~~~~ip~i~g~~~g~~G  156 (231)
T PRK08328        104 VGRLSEENIDEVLKGVDVIVDCLDN-----------------FETRYLLDDYAHKKGIPLVHGAVEGTYG  156 (231)
T ss_pred             eccCCHHHHHHHHhcCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEeeccCEE
Confidence            44443322    5678888876521                 1122345678888888999888776665

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.22  E-value=0.003  Score=51.69  Aligned_cols=106  Identities=14%  Similarity=0.106  Sum_probs=70.9

Q ss_pred             EEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccC-----CCceeEeecccCccccCCcCEEEEccCCCCc
Q 025022           37 VTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (259)
Q Consensus        37 ItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~  110 (259)
                      |.| +|.+|.+++..|+..+.. ++++++.+.........++..     .....+...|.  .+++++|+||.+||... 
T Consensus         1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~--~~~~daDivVitag~~r-   76 (299)
T TIGR01771         1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDY--SDCKDADLVVITAGAPQ-   76 (299)
T ss_pred             CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCH--HHHCCCCEEEECCCCCC-
Confidence            345 599999999999888753 588888755433222111111     11233332221  23889999999999754 


Q ss_pred             cccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                       ....+..+.+..|....+.+.+.+.+++.  .+|.+|-
T Consensus        77 -k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  114 (299)
T TIGR01771        77 -KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN  114 (299)
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence             22445678889999999999999988866  6776664

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.19  E-value=0.0039  Score=52.41  Aligned_cols=103  Identities=16%  Similarity=0.091  Sum_probs=67.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~   87 (259)
                      +++.+|+|.|+ |.+|.++++.|...|...+.+++...-..                      .+.+++..+...++.+.
T Consensus        26 L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~  104 (355)
T PRK05597         26 LFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV  104 (355)
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence            45789999996 89999999999999988788887653111                      01122222223455555


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEeccee
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~  150 (259)
                      ..++...    +.++|+||.+..                 |...-..+.++|.+.++.+|+.++...
T Consensus       105 ~~i~~~~~~~~~~~~DvVvd~~d-----------------~~~~r~~~n~~c~~~~ip~v~~~~~g~  154 (355)
T PRK05597        105 RRLTWSNALDELRDADVILDGSD-----------------NFDTRHLASWAAARLGIPHVWASILGF  154 (355)
T ss_pred             eecCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            5555432    678999998762                 122223466788888888888765443

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.18  E-value=0.001  Score=53.92  Aligned_cols=76  Identities=21%  Similarity=0.299  Sum_probs=48.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC-CceeEeecccCccccCCcCEEEEccCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      +..+++++|+|+ |.+|++++..|.+.|...|+++.|+..+.. .+.+.+.. ..+.+ ..+. .....+.|+||++...
T Consensus       120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~-~l~~~~~~~~~~~~-~~~~-~~~~~~~DivInaTp~  195 (278)
T PRK00258        120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAE-ELAKLFGALGKAEL-DLEL-QEELADFDLIINATSA  195 (278)
T ss_pred             CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHHhhhccceee-cccc-hhccccCCEEEECCcC
Confidence            356789999996 999999999999999555999998654332 22222211 11222 1121 1225679999998754


Q ss_pred             C
Q 025022          108 A  108 (259)
Q Consensus       108 ~  108 (259)
                      .
T Consensus       196 g  196 (278)
T PRK00258        196 G  196 (278)
T ss_pred             C
Confidence            3

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.18  E-value=0.00089  Score=49.16  Aligned_cols=75  Identities=17%  Similarity=0.163  Sum_probs=47.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--cCCcCEEEEccCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--LIEVDQIYHLACP  107 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~d~vi~~a~~  107 (259)
                      .++++++|+|+ |.+|..+++.|.+.|...|++.+|+........+. +.   ...+..+..+..  ..++|+||++...
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~Dvvi~~~~~   91 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAER-FG---ELGIAIAYLDLEELLAEADLIINTTPV   91 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH-Hh---hcccceeecchhhccccCCEEEeCcCC
Confidence            45789999997 99999999999998633388888754332222221 11   110111222222  5789999998865


Q ss_pred             CC
Q 025022          108 AS  109 (259)
Q Consensus       108 ~~  109 (259)
                      ..
T Consensus        92 ~~   93 (155)
T cd01065          92 GM   93 (155)
T ss_pred             CC
Confidence            43

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.17  E-value=0.0043  Score=50.89  Aligned_cols=83  Identities=16%  Similarity=0.195  Sum_probs=53.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~~  111 (259)
                      +.+|.|.|||||+|..|++.|.++..-++..+..+....            +     +..+..+.++|++|.+...    
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~------------~-----~~~~~~~~~~DvvFlalp~----   60 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD------------A-----AARRELLNAADVAILCLPD----   60 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc------------c-----cCchhhhcCCCEEEECCCH----
Confidence            568999999999999999999888755466655432110            0     1111124578999876631    


Q ss_pred             ccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                    .....++..+.+.|+++|=.|+..
T Consensus        61 --------------~~s~~~~~~~~~~g~~VIDlSadf   84 (313)
T PRK11863         61 --------------DAAREAVALIDNPATRVIDASTAH   84 (313)
T ss_pred             --------------HHHHHHHHHHHhCCCEEEECChhh
Confidence                          012345555556677888888765

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.14  E-value=0.0026  Score=53.91  Aligned_cols=102  Identities=18%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC------------------C----cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG------------------S----KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~------------------~----~~~~~~~~~~~~~~~~~   87 (259)
                      +...+|+|.|+ |.+|.++++.|...|...++++++..-.                  .    .+.+++..+...++.+.
T Consensus       133 l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  211 (376)
T PRK08762        133 LLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ  211 (376)
T ss_pred             HhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            35678999975 8899999999999998778888875210                  0    01112221222333444


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      ..+.+..    +.++|+||++...                 ...-..+.++|.+.++.+|+.+...
T Consensus       212 ~~~~~~~~~~~~~~~D~Vv~~~d~-----------------~~~r~~ln~~~~~~~ip~i~~~~~g  260 (376)
T PRK08762        212 ERVTSDNVEALLQDVDVVVDGADN-----------------FPTRYLLNDACVKLGKPLVYGAVFR  260 (376)
T ss_pred             ccCChHHHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEEecc
Confidence            4333322    5689999987631                 1122346788899888888887554

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=97.13  E-value=0.0067  Score=47.63  Aligned_cols=104  Identities=11%  Similarity=0.115  Sum_probs=64.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~   87 (259)
                      +++.+|+|.| .|.+|+++++.|...|...+++++...-..                      .+.+.+..+..+++.+.
T Consensus         9 L~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~   87 (231)
T cd00755           9 LRNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE   87 (231)
T ss_pred             HhCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence            4567999999 588999999999999987788887542110                      01111122223344444


Q ss_pred             cccCccc-----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceee
Q 025022           88 HDVTEPL-----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (259)
Q Consensus        88 ~dl~~~~-----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~  151 (259)
                      ..++.+.     ..++|+||.+..                 +...-..+.+.|.+.++.+|...+.+-.
T Consensus        88 ~~i~~~~~~~l~~~~~D~VvdaiD-----------------~~~~k~~L~~~c~~~~ip~I~s~g~g~~  139 (231)
T cd00755          88 EFLTPDNSEDLLGGDPDFVVDAID-----------------SIRAKVALIAYCRKRKIPVISSMGAGGK  139 (231)
T ss_pred             eecCHhHHHHHhcCCCCEEEEcCC-----------------CHHHHHHHHHHHHHhCCCEEEEeCCcCC
Confidence            4444222     346899998752                 1222345778899988888876665443

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.10  E-value=0.0016  Score=56.71  Aligned_cols=67  Identities=21%  Similarity=0.360  Sum_probs=50.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      |+|+|+|+ |.+|+++++.|.+.|+. |+++++++..    .+...+..++.++.+|.++..      ..++|.+|.+.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~~-v~vid~~~~~----~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENND-VTVIDTDEER----LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCc-EEEEECCHHH----HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            68999997 99999999999999998 8888874432    222211236788889888765      56788888765

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.10  E-value=0.0027  Score=46.74  Aligned_cols=70  Identities=19%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      .++++++|+|.|| |-+|...++.|++.|+. |+++..  + ..+.+..+   ..+.+....+.+.++.+.|.||-+.
T Consensus         9 l~l~~~~vlVvGG-G~va~rka~~Ll~~ga~-V~VIsp--~-~~~~l~~l---~~i~~~~~~~~~~dl~~a~lViaaT   78 (157)
T PRK06719          9 FNLHNKVVVIIGG-GKIAYRKASGLKDTGAF-VTVVSP--E-ICKEMKEL---PYITWKQKTFSNDDIKDAHLIYAAT   78 (157)
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEcC--c-cCHHHHhc---cCcEEEecccChhcCCCceEEEECC
Confidence            3567899999996 99999999999999998 777742  1 22223221   3566666666666678888887643

>PRK08223 hypothetical protein; Validated

Probab=97.09  E-value=0.011  Score=47.84  Aligned_cols=103  Identities=13%  Similarity=0.021  Sum_probs=65.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~   87 (259)
                      +.+.+|+|.|+ |.+|.++++.|...|...+.+++...-..                      .+.+++..+..+++.+.
T Consensus        25 L~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~  103 (287)
T PRK08223         25 LRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP  103 (287)
T ss_pred             HhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            45679999995 88999999999999988777777542111                      01112222223455555


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecc
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~  148 (259)
                      ..++...    +.++|+||.+.-.         +      +...-..+-++|.+.++.+|+.+..
T Consensus       104 ~~l~~~n~~~ll~~~DlVvD~~D~---------~------~~~~r~~ln~~c~~~~iP~V~~~~~  153 (287)
T PRK08223        104 EGIGKENADAFLDGVDVYVDGLDF---------F------EFDARRLVFAACQQRGIPALTAAPL  153 (287)
T ss_pred             cccCccCHHHHHhCCCEEEECCCC---------C------cHHHHHHHHHHHHHcCCCEEEEecc
Confidence            5555433    6789999865411         0      1122345678899998888886544

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=97.06  E-value=0.0089  Score=49.06  Aligned_cols=101  Identities=16%  Similarity=0.284  Sum_probs=66.0

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEeecccC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIRHDVT   91 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~~dl~   91 (259)
                      +|+|.|+ |.+|.++++.|...|...+.+++...-..                      .+.++++.....++.+..++.
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            5899995 99999999999999988788887542111                      011122222334555666665


Q ss_pred             cc----c-cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           92 EP----L-LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        92 ~~----~-~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      +.    + +.++|+||.+.-                 |...-..+-+.|...++.+|..++.+.+|
T Consensus        80 ~~~~~~~f~~~~DvVv~a~D-----------------n~~ar~~in~~c~~~~ip~I~~gt~G~~G  128 (312)
T cd01489          80 DPDFNVEFFKQFDLVFNALD-----------------NLAARRHVNKMCLAADVPLIESGTTGFLG  128 (312)
T ss_pred             CccchHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHCCCCEEEEecCccee
Confidence            42    1 678999988652                 22333456778888888888887765543

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=97.05  E-value=0.018  Score=50.69  Aligned_cols=165  Identities=16%  Similarity=0.217  Sum_probs=98.5

Q ss_pred             CCCEEEEEcC-chhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccC-----CCceeEeecccCccc---------
Q 025022           31 SNMRILVTGG-AGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-----HPRFELIRHDVTEPL---------   94 (259)
Q Consensus        31 ~~~~vlItGa-tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~-----~~~~~~~~~dl~~~~---------   94 (259)
                      ..+..+|||| -|.||..++..|++-|.+ |++...+-+.. .+-.+.+..     ...+-++..++..+.         
T Consensus       395 ~d~valVTGA~~gSIaa~Vv~~LL~gGAt-VI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewI  473 (866)
T COG4982         395 GDKVALVTGASKGSIAAAVVARLLAGGAT-VIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWI  473 (866)
T ss_pred             ccceEEEecCCCcchHHHHHHHHHhCCcE-EEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHh
Confidence            4578999995 588999999999999999 77777543322 222222221     123444555554443         


Q ss_pred             -----------------cCCcCEEEEccCCCCccc-c--ccChhHHHHHhhhhHHHHHHHHHHhC----C----eEEEEe
Q 025022           95 -----------------LIEVDQIYHLACPASPIF-Y--KYNPVKTIKTNVIGTLNMLGLAKRVG----A----RILLTS  146 (259)
Q Consensus        95 -----------------~~~~d~vi~~a~~~~~~~-~--~~~~~~~~~~n~~~~~~l~~~~~~~~----~----~~i~~S  146 (259)
                                       .-.+|.+|-.|++..... .  ....+..+++=++...+++-..++.+    +    ++|...
T Consensus       474 g~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPg  553 (866)
T COG4982         474 GDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPG  553 (866)
T ss_pred             ccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecC
Confidence                             123678888887654311 1  11233444555556666666665543    2    566555


Q ss_pred             cceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCCCCC
Q 025022          147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH----GIEIRIARIFNTYGPRMNI  213 (259)
Q Consensus       147 s~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lr~~~v~g~~~~~  213 (259)
                      |..       +.          -+.....|+.+|.+.|.++..+..+.    -+..+--++||+-|.+...
T Consensus       554 SPN-------rG----------~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGLMg  607 (866)
T COG4982         554 SPN-------RG----------MFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGLMG  607 (866)
T ss_pred             CCC-------CC----------ccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccccC
Confidence            531       00          12233679999999999998876543    2445566778877766543

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.04  E-value=0.0088  Score=46.43  Aligned_cols=105  Identities=17%  Similarity=0.200  Sum_probs=65.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC---------------------cchhhhccCCCceeEeec
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---------------------KDNLRKWIGHPRFELIRH   88 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~---------------------~~~~~~~~~~~~~~~~~~   88 (259)
                      +...+|+|.|+ |.+|..+++.|...|...+++++...-..                     .+.+.+......++.+..
T Consensus        26 L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~  104 (212)
T PRK08644         26 LKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE  104 (212)
T ss_pred             HhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence            45679999995 99999999999999988788888652110                     011111112233444444


Q ss_pred             ccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CCeEEEEecceeec
Q 025022           89 DVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GARILLTSTSEVYG  152 (259)
Q Consensus        89 dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~i~~Ss~~~~~  152 (259)
                      .+.+..    +.++|+||.+.-                 |...-..+.+.|.+. ++.+|+.+...-++
T Consensus       105 ~i~~~~~~~~~~~~DvVI~a~D-----------------~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~  156 (212)
T PRK08644        105 KIDEDNIEELFKDCDIVVEAFD-----------------NAETKAMLVETVLEHPGKKLVAASGMAGYG  156 (212)
T ss_pred             ecCHHHHHHHHcCCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCCEEEeehhhccC
Confidence            444322    567899987641                 122223566777777 77888876655444

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=97.03  E-value=0.0067  Score=51.74  Aligned_cols=104  Identities=18%  Similarity=0.121  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEeec
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIRH   88 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~   88 (259)
                      ...+|+|.|+ |.+|..+++.|...|...+.+++...-...                      +.+.+.....+++.+..
T Consensus        41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  119 (392)
T PRK07878         41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF  119 (392)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence            4679999995 889999999999999887887775421110                      11111222233444555


Q ss_pred             ccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           89 DVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        89 dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      .+....    +.++|+||.+..                 |...-..+-++|.+.++.+|+.+....+|
T Consensus       120 ~i~~~~~~~~~~~~D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~p~v~~~~~g~~G  170 (392)
T PRK07878        120 RLDPSNAVELFSQYDLILDGTD-----------------NFATRYLVNDAAVLAGKPYVWGSIYRFEG  170 (392)
T ss_pred             cCChhHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence            554322    677899987652                 12222346788888888888877765444

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=97.03  E-value=0.0031  Score=53.21  Aligned_cols=102  Identities=18%  Similarity=0.235  Sum_probs=65.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~   87 (259)
                      .+..+|+|.|+ |.+|.++++.|...|...+++++...-...                      ..+++......++.+.
T Consensus        39 l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~  117 (370)
T PRK05600         39 LHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR  117 (370)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence            45679999995 889999999999999876888876521100                      1111222223444555


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      ..++...    +.++|+||.+.-                 |...-..+-++|.+.++.+|+.+...
T Consensus       118 ~~i~~~~~~~~~~~~DlVid~~D-----------------n~~~r~~in~~~~~~~iP~v~~~~~g  166 (370)
T PRK05600        118 ERLTAENAVELLNGVDLVLDGSD-----------------SFATKFLVADAAEITGTPLVWGTVLR  166 (370)
T ss_pred             eecCHHHHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEec
Confidence            5454322    678999988762                 22233356678888888777776543

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.00  E-value=0.0081  Score=49.99  Aligned_cols=96  Identities=15%  Similarity=0.216  Sum_probs=54.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhc-CCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMEN-EKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~-g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      .++|.|.||||++|+.+++.|.++ ...  ++..+..... ....+ . +....+.+...|.  ..+.++|++|.+++..
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~s-aGk~~-~-~~~~~l~v~~~~~--~~~~~~Divf~a~~~~   79 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRS-AGKTV-Q-FKGREIIIQEAKI--NSFEGVDIAFFSAGGE   79 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECccc-CCCCe-e-eCCcceEEEeCCH--HHhcCCCEEEECCChH
Confidence            479999999999999999999864 443  1333433211 11111 1 1111233333332  2356899998877421


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEeccee
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~  150 (259)
                                        ....+...+.+.|+.+|=.||..-
T Consensus        80 ------------------~s~~~~~~~~~~G~~VID~Ss~fR  103 (347)
T PRK06728         80 ------------------VSRQFVNQAVSSGAIVIDNTSEYR  103 (347)
T ss_pred             ------------------HHHHHHHHHHHCCCEEEECchhhc
Confidence                              123455555556667776666553

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=96.98  E-value=0.0095  Score=47.25  Aligned_cols=116  Identities=20%  Similarity=0.082  Sum_probs=68.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCC-CCcchhhhccCCCceeEeeccc-CccccCCcCEEEEccC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDV-TEPLLIEVDQIYHLAC  106 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~dl-~~~~~~~~d~vi~~a~  106 (259)
                      ..+-||.|+||+|.||+.|...|-... .++....+.... .-..-+........+.-+.++- .+..+.+.|+|+--||
T Consensus        26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAG  105 (345)
T KOG1494|consen   26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPAG  105 (345)
T ss_pred             cCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecCC
Confidence            346799999999999999977664332 232333332211 1111111110011222222211 1111789999999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      ...  ......++++.+|....+.+..++.++-.  .+.++|-
T Consensus       106 VPR--KPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN  146 (345)
T KOG1494|consen  106 VPR--KPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN  146 (345)
T ss_pred             CCC--CCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence            764  33445678999999999999988876533  6666553

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.97  E-value=0.0058  Score=50.20  Aligned_cols=107  Identities=15%  Similarity=0.116  Sum_probs=67.6

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcch-h--hhccC--CCceeEe-ecccCccccCCcCEEEEccCCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-L--RKWIG--HPRFELI-RHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-~--~~~~~--~~~~~~~-~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      |.|+|+ |.+|..++..|...|..+|+++++++...... +  .....  .....+. ..|.  .+++++|+||.+++..
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~--~~l~dADiVIit~g~p   77 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY--EDIAGSDVVVITAGIP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH--HHhCCCCEEEEecCCC
Confidence            468897 99999999999888752499999875432111 1  11100  0112222 1332  2378999999999865


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ..  ...+..+.+..|....+.+++.+.+...  .+|.+|
T Consensus        78 ~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s  115 (300)
T cd01339          78 RK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT  115 (300)
T ss_pred             CC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            32  2334455667788888899888887765  545554

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.97  E-value=0.008  Score=48.17  Aligned_cols=31  Identities=16%  Similarity=0.481  Sum_probs=25.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVD   64 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~   64 (259)
                      ++|.|+|++|.+|+.+++.+.+. +.+ ++++.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~e-lvav~   33 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLE-LVAAV   33 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCE-EEEEE
Confidence            79999999999999999998875 566 55544

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=96.95  E-value=0.0027  Score=59.57  Aligned_cols=157  Identities=13%  Similarity=0.120  Sum_probs=97.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc--chhhhccCCCc--eeEeecccCccc-----------c
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWIGHPR--FELIRHDVTEPL-----------L   95 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~~~~~~--~~~~~~dl~~~~-----------~   95 (259)
                      ..+.++|+||-|..|..|++-|+.+|...++...|+.-+..  ...-......+  +.+-..|++...           +
T Consensus      1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl 1846 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKL 1846 (2376)
T ss_pred             ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhc
Confidence            35789999999999999999999999986666666532211  11111111122  333334444433           4


Q ss_pred             CCcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHHHhC-C--eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           96 IEVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      .-+-.|||+|....+    ++...++.+.-+..+.++.++=+..++.= .  .||.+||.+--.                
T Consensus      1847 ~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGR---------------- 1910 (2376)
T KOG1202|consen 1847 GPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGR---------------- 1910 (2376)
T ss_pred             ccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccC----------------
Confidence            556788999886543    22334455555667777777766665542 2  788888875221                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEec
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF  204 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~  204 (259)
                      -....+.|+.+..++|+++++-. ..|++-+.+-=|
T Consensus      1911 GN~GQtNYG~aNS~MERiceqRr-~~GfPG~AiQWG 1945 (2376)
T KOG1202|consen 1911 GNAGQTNYGLANSAMERICEQRR-HEGFPGTAIQWG 1945 (2376)
T ss_pred             CCCcccccchhhHHHHHHHHHhh-hcCCCcceeeee
Confidence            11223569999999999987753 345555544433

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.94  E-value=0.0019  Score=52.18  Aligned_cols=75  Identities=19%  Similarity=0.287  Sum_probs=47.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      .++++++|+|+ |.+|++++..|.+.|+. |++..|+..+..+..+............  +.+....++|+||++.+..
T Consensus       115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~-v~v~~R~~~~~~~la~~~~~~~~~~~~~--~~~~~~~~~DivInatp~g  189 (270)
T TIGR00507       115 RPNQRVLIIGA-GGAARAVALPLLKADCN-VIIANRTVSKAEELAERFQRYGEIQAFS--MDELPLHRVDLIINATSAG  189 (270)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHhhcCceEEec--hhhhcccCccEEEECCCCC
Confidence            34689999997 89999999999999986 8888886443322222211111122222  2222245799999998653

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.93  E-value=0.0037  Score=59.07  Aligned_cols=73  Identities=21%  Similarity=0.273  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCC-------------eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-------------EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---   94 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~-------------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---   94 (259)
                      .+++|+|+|+ |++|+..++.|.+....             .|.+.++.... .+.+....  ++++.+..|..+.+   
T Consensus       568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~-a~~la~~~--~~~~~v~lDv~D~e~L~  643 (1042)
T PLN02819        568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKD-AKETVEGI--ENAEAVQLDVSDSESLL  643 (1042)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHH-HHHHHHhc--CCCceEEeecCCHHHHH
Confidence            4679999996 99999999999876431             25555543222 22222211  35677888887766   


Q ss_pred             --cCCcCEEEEccCC
Q 025022           95 --LIEVDQIYHLACP  107 (259)
Q Consensus        95 --~~~~d~vi~~a~~  107 (259)
                        ..++|+||++...
T Consensus       644 ~~v~~~DaVIsalP~  658 (1042)
T PLN02819        644 KYVSQVDVVISLLPA  658 (1042)
T ss_pred             HhhcCCCEEEECCCc
Confidence              3679999998754

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.92  E-value=0.0081  Score=50.33  Aligned_cols=69  Identities=19%  Similarity=0.248  Sum_probs=39.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcC-CC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCc-cccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENE-KN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g-~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~-~~~~~~d~vi~~a~  106 (259)
                      ++|.|.||||++|+.+++.|+++. ..  .++.+.....  ......+ .  +-.....++.+ ..+.++|++|.+++
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~s--g~~~~~f-~--g~~~~v~~~~~~~~~~~~Divf~a~~   74 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQA--GGAAPSF-G--GKEGTLQDAFDIDALKKLDIIITCQG   74 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhh--CCccccc-C--CCcceEEecCChhHhcCCCEEEECCC
Confidence            689999999999999999666653 33  2444443211  1111111 1  11122233332 23678999998775

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.92  E-value=0.017  Score=46.29  Aligned_cols=106  Identities=14%  Similarity=0.145  Sum_probs=63.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----c------------------chhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----K------------------DNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----~------------------~~~~~~~~~~~~~~~~   87 (259)
                      +.+.+|+|.| .|.+|.++++.|...|...+++++...-..    .                  +.+.+......++.+.
T Consensus        28 L~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~  106 (268)
T PRK15116         28 FADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD  106 (268)
T ss_pred             hcCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence            4578999999 489999999999999976688887542110    0                  1111111112233332


Q ss_pred             cccCccc----c-CCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecC
Q 025022           88 HDVTEPL----L-IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (259)
Q Consensus        88 ~dl~~~~----~-~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~  153 (259)
                      .-++.+.    + .++|+||.+...                 ...-..+.+.|++.++.+|..++....-+
T Consensus       107 ~~i~~e~~~~ll~~~~D~VIdaiD~-----------------~~~k~~L~~~c~~~~ip~I~~gGag~k~d  160 (268)
T PRK15116        107 DFITPDNVAEYMSAGFSYVIDAIDS-----------------VRPKAALIAYCRRNKIPLVTTGGAGGQID  160 (268)
T ss_pred             cccChhhHHHHhcCCCCEEEEcCCC-----------------HHHHHHHHHHHHHcCCCEEEECCcccCCC
Confidence            2222111    2 468999887632                 22223578889998888887766553333

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.88  E-value=0.01  Score=44.52  Aligned_cols=101  Identities=18%  Similarity=0.179  Sum_probs=61.0

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC--C-------------------cchhhhccCCCceeEeecccCc
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--S-------------------KDNLRKWIGHPRFELIRHDVTE   92 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~-------------------~~~~~~~~~~~~~~~~~~dl~~   92 (259)
                      +|+|.|+ |.+|..+++.|...|...+++++...-.  +                   ...+++.....+++.+...+..
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            5889995 9999999999999998778888865311  0                   0111112222344444444444


Q ss_pred             cc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CCeEEEEecceeec
Q 025022           93 PL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GARILLTSTSEVYG  152 (259)
Q Consensus        93 ~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~i~~Ss~~~~~  152 (259)
                      ..    +.++|+||.+..                 |...-..+.+.+.+. ++.+|+.+...-|+
T Consensus        80 ~~~~~~l~~~DlVi~~~d-----------------~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~  127 (174)
T cd01487          80 NNLEGLFGDCDIVVEAFD-----------------NAETKAMLAESLLGNKNKPVVCASGMAGFG  127 (174)
T ss_pred             hhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHHCCCCEEEEehhhccC
Confidence            22    678999998742                 112223466666666 77888776554444

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.85  E-value=0.015  Score=45.70  Aligned_cols=101  Identities=17%  Similarity=0.176  Sum_probs=64.1

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEeecccC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIRHDVT   91 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~dl~   91 (259)
                      +|+|.| .|.+|.++++.|...|...+.+++...-...                      +.+++..+..+++.+..++.
T Consensus         1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            588888 6899999999999999887888876421100                      11111222234555555553


Q ss_pred             ccc------cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           92 EPL------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        92 ~~~------~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      +..      +.++|+||.+..                 |...-..+-+.|.+.++.+|..++.+.+|
T Consensus        80 ~~~~~~~~f~~~~DvVi~a~D-----------------n~~aR~~ln~~c~~~~iplI~~g~~G~~G  129 (234)
T cd01484          80 PEQDFNDTFFEQFHIIVNALD-----------------NIIARRYVNGMLIFLIVPLIESGTEGFKG  129 (234)
T ss_pred             hhhhchHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcccCCce
Confidence            221      678999988642                 23334457778888888888877765443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.82  E-value=0.0011  Score=46.80  Aligned_cols=43  Identities=21%  Similarity=0.323  Sum_probs=30.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchh
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL   74 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~   74 (259)
                      ...++|-|.|+ |-+|.+|.+.|.+.|+. |..+..+.....+..
T Consensus         8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~~-v~~v~srs~~sa~~a   50 (127)
T PF10727_consen    8 AARLKIGIIGA-GRVGTALARALARAGHE-VVGVYSRSPASAERA   50 (127)
T ss_dssp             ----EEEEECT-SCCCCHHHHHHHHTTSE-EEEESSCHH-HHHHH
T ss_pred             CCccEEEEECC-CHHHHHHHHHHHHCCCe-EEEEEeCCccccccc
Confidence            44689999996 99999999999999998 777765433333333

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.82  E-value=0.0041  Score=47.80  Aligned_cols=70  Identities=19%  Similarity=0.198  Sum_probs=45.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      ++++|+++|+|. |.+|+++++.|.+.|++ |++.+++.... +.+...+   +...+.  ..+....++|+++.+|.
T Consensus        25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~-Vvv~D~~~~~~-~~~~~~~---g~~~v~--~~~l~~~~~Dv~vp~A~   94 (200)
T cd01075          25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAK-LIVADINEEAV-ARAAELF---GATVVA--PEEIYSVDADVFAPCAL   94 (200)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEcCCHHHH-HHHHHHc---CCEEEc--chhhccccCCEEEeccc
Confidence            467899999996 78999999999999998 88887653221 1121211   222222  21211337999998774

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=96.79  E-value=0.0015  Score=54.25  Aligned_cols=73  Identities=19%  Similarity=0.155  Sum_probs=48.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~  106 (259)
                      +.+|||+||+|.+|...++.+...|+. ++++..++.+.. .++++....-+++...|+.+.-     ..++|+|+.+.|
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~-~v~~~~s~~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG  220 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGAT-VVAVVSSSEKLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG  220 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCc-EEEEecCHHHHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC
Confidence            689999999999999999999999986 555555433333 4444322223334444443332     236999999876

>PRK07411 hypothetical protein; Validated

Probab=96.78  E-value=0.014  Score=49.71  Aligned_cols=105  Identities=15%  Similarity=0.071  Sum_probs=66.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~   87 (259)
                      .+..+|+|.|+ |.+|..+++.|...|...+++++...-...                      +.+++.....+++.+.
T Consensus        36 L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~  114 (390)
T PRK07411         36 LKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE  114 (390)
T ss_pred             HhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence            45679999995 889999999999999887777775421110                      1111222223455555


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      ..++...    +.++|+||.+..                 |...-..+-++|.+.++.+|+.+...-+|
T Consensus       115 ~~~~~~~~~~~~~~~D~Vvd~~d-----------------~~~~r~~ln~~~~~~~~p~v~~~~~g~~g  166 (390)
T PRK07411        115 TRLSSENALDILAPYDVVVDGTD-----------------NFPTRYLVNDACVLLNKPNVYGSIFRFEG  166 (390)
T ss_pred             cccCHHhHHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEccCEE
Confidence            5555433    678999998763                 12222345678888888788776654443

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.78  E-value=0.0027  Score=48.44  Aligned_cols=67  Identities=24%  Similarity=0.197  Sum_probs=39.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |++. +||+|.||..|++.|.+.|++ |++-.|+.++......+.+. +.   +.+--.+...+..|+||...
T Consensus         2 ~~~~-i~GtGniG~alA~~~a~ag~e-V~igs~r~~~~~~a~a~~l~-~~---i~~~~~~dA~~~aDVVvLAV   68 (211)
T COG2085           2 MIIA-IIGTGNIGSALALRLAKAGHE-VIIGSSRGPKALAAAAAALG-PL---ITGGSNEDAAALADVVVLAV   68 (211)
T ss_pred             cEEE-EeccChHHHHHHHHHHhCCCe-EEEecCCChhHHHHHHHhhc-cc---cccCChHHHHhcCCEEEEec
Confidence            4444 455899999999999999999 66665544433333333221 11   12211122255688887654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.77  E-value=0.0082  Score=41.64  Aligned_cols=64  Identities=25%  Similarity=0.408  Sum_probs=46.2

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      |+|+|. |.+|+.+++.|.+.+.+ |+++.+++..    .+... ..++.++.+|.++++      ..+++.++-+.
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~-vvvid~d~~~----~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~   70 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGID-VVVIDRDPER----VEELR-EEGVEVIYGDATDPEVLERAGIEKADAVVILT   70 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSE-EEEEESSHHH----HHHHH-HTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCE-EEEEECCcHH----HHHHH-hcccccccccchhhhHHhhcCccccCEEEEcc
Confidence            578885 78999999999996656 8888874332    22221 135889999999988      56888888765

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.76  E-value=0.012  Score=51.61  Aligned_cols=76  Identities=20%  Similarity=0.119  Sum_probs=51.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      ..+++|+|+|+ |.+|..+++.|.++|++ |+++++++..........+...++++..++-.. ....+|.||...|..
T Consensus        14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~~-V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         14 WQGLRVVVAGL-GVSGFAAADALLELGAR-VTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGWR   89 (480)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCcC
Confidence            56789999996 88999999999999998 988886543222222222223466666554332 234689999888754

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.73  E-value=0.012  Score=51.35  Aligned_cols=70  Identities=23%  Similarity=0.302  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~  104 (259)
                      .+++++|+|+ |.+|+.+++.|.+.|+. |+++++++.... .+...  ..++..+.+|.++.+      ..++|.||-+
T Consensus       230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~-v~vid~~~~~~~-~~~~~--~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~  304 (453)
T PRK09496        230 PVKRVMIVGG-GNIGYYLAKLLEKEGYS-VKLIERDPERAE-ELAEE--LPNTLVLHGDGTDQELLEEEGIDEADAFIAL  304 (453)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEECCHHHHH-HHHHH--CCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence            4688999997 99999999999999998 888887543221 22221  135778899998776      5678888865


Q ss_pred             c
Q 025022          105 A  105 (259)
Q Consensus       105 a  105 (259)
                      .
T Consensus       305 ~  305 (453)
T PRK09496        305 T  305 (453)
T ss_pred             C
Confidence            4

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.70  E-value=0.015  Score=47.54  Aligned_cols=82  Identities=16%  Similarity=0.185  Sum_probs=50.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCccc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF  112 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~~~  112 (259)
                      .+|.|.|+|||.|..|++.|..+..-++..+.....     +         +  ..|. +....++|++|.+....    
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----~---------~--~~~~-~~~~~~~D~vFlalp~~----   60 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----K---------D--AAER-AKLLNAADVAILCLPDD----   60 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----c---------C--cCCH-hHhhcCCCEEEECCCHH----
Confidence            479999999999999999999986655666553211     0         0  0010 01135789888766311    


Q ss_pred             cccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                    ....++..+.+.++++|=.|+..
T Consensus        61 --------------~s~~~~~~~~~~g~~VIDlSadf   83 (310)
T TIGR01851        61 --------------AAREAVSLVDNPNTCIIDASTAY   83 (310)
T ss_pred             --------------HHHHHHHHHHhCCCEEEECChHH
Confidence                          11234455555666888888764

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.70  E-value=0.016  Score=40.60  Aligned_cols=29  Identities=24%  Similarity=0.662  Sum_probs=24.9

Q ss_pred             EEEEEcCchhhhHHHHHHHHhc-CCCeEEEE
Q 025022           34 RILVTGGAGFIGSHLVDKLMEN-EKNEVIVV   63 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~-g~~~V~~~   63 (259)
                      ++.|+|++|.+|..+++.|.+. +++ +.++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~-l~av   30 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFE-VVAL   30 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCce-EEEE
Confidence            5789999999999999999995 666 6666

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.69  E-value=0.0028  Score=54.25  Aligned_cols=78  Identities=12%  Similarity=0.115  Sum_probs=52.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +..+++|+|.|+ |.+|+.+++.|.+.|...+++..|...+. ..+...++  ....+..|-....+..+|+||++.+..
T Consensus       178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra-~~La~~~~--~~~~~~~~~l~~~l~~aDiVI~aT~a~  253 (414)
T PRK13940        178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKA-QKITSAFR--NASAHYLSELPQLIKKADIIIAAVNVL  253 (414)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHhc--CCeEecHHHHHHHhccCCEEEECcCCC
Confidence            467899999996 99999999999999987688888864432 23333221  122232222122267899999988755


Q ss_pred             Cc
Q 025022          109 SP  110 (259)
Q Consensus       109 ~~  110 (259)
                      .+
T Consensus       254 ~~  255 (414)
T PRK13940        254 EY  255 (414)
T ss_pred             Ce
Confidence            43

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.68  E-value=0.013  Score=49.09  Aligned_cols=93  Identities=15%  Similarity=0.110  Sum_probs=56.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHH-hcCCC--eEEEEcCCCC-CCcchhhhccCCCceeEeecccCcc-ccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLM-ENEKN--EVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~-~~g~~--~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~dl~~~-~~~~~d~vi~~a~~  107 (259)
                      ++|.|.||||-+|+.+++.|. ++.+.  .++.+..... .....    +.  +-.....++.+. .+.++|+++.++|.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~----f~--~~~~~v~~~~~~~~~~~vDivffa~g~   74 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPS----FG--GTTGTLQDAFDIDALKALDIIITCQGG   74 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCC----CC--CCcceEEcCcccccccCCCEEEEcCCH
Confidence            579999999999999999998 55544  2444443211 11111    11  112233344443 47789999998852


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecce
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSE  149 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~  149 (259)
                                        ...+.+...+.+.|.  .+|=.||..
T Consensus        75 ------------------~~s~~~~p~~~~aG~~~~VIDnSSa~  100 (366)
T TIGR01745        75 ------------------DYTNEIYPKLRESGWQGYWIDAASSL  100 (366)
T ss_pred             ------------------HHHHHHHHHHHhCCCCeEEEECChhh
Confidence                              123567777888884  455555544

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.68  E-value=0.005  Score=50.06  Aligned_cols=75  Identities=15%  Similarity=0.124  Sum_probs=47.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccccCCcCEEEEcc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      .++++|+|+|+ |..|++++..|.+.|...|+++.|...+.....+.+.. .........+-......++|+||++.
T Consensus       125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaT  200 (284)
T PRK12549        125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHAT  200 (284)
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECC
Confidence            45689999995 77999999999999987799998865443322222111 11222222221112256799999984

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.66  E-value=0.0067  Score=50.02  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=30.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      |+|.|+| +|.+|..++..|+++|++ |+++++++.
T Consensus         3 ~~V~VIG-~G~mG~~iA~~la~~G~~-V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIG-AGLIGRAWAIVFARAGHE-VRLWDADPA   36 (308)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHCCCe-eEEEeCCHH
Confidence            5899999 799999999999999998 999998643

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.62  E-value=0.018  Score=39.11  Aligned_cols=66  Identities=23%  Similarity=0.313  Sum_probs=45.4

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      .+.++++|+|+|| |-+|..=++.|++.|.+ |+++....    ...+     ..+++..-++. .++.+.+.||-+.
T Consensus         3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~-v~vis~~~----~~~~-----~~i~~~~~~~~-~~l~~~~lV~~at   68 (103)
T PF13241_consen    3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAK-VTVISPEI----EFSE-----GLIQLIRREFE-EDLDGADLVFAAT   68 (103)
T ss_dssp             E--TT-EEEEEEE-SHHHHHHHHHHCCCTBE-EEEEESSE----HHHH-----TSCEEEESS-G-GGCTTESEEEE-S
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEECCch----hhhh-----hHHHHHhhhHH-HHHhhheEEEecC
Confidence            4578899999997 99999999999999988 88887643    1111     35566666654 4477888887543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.60  E-value=0.0027  Score=51.67  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=46.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      ...+++++|+|. |.+|+.+++.|...|.+ |++..|+..... ....    .+...+..+-....+.++|+||++.
T Consensus       148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~-V~v~~R~~~~~~-~~~~----~g~~~~~~~~l~~~l~~aDiVint~  217 (287)
T TIGR02853       148 TIHGSNVMVLGF-GRTGMTIARTFSALGAR-VFVGARSSADLA-RITE----MGLIPFPLNKLEEKVAEIDIVINTI  217 (287)
T ss_pred             CCCCCEEEEEcC-hHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHH----CCCeeecHHHHHHHhccCCEEEECC
Confidence            467899999996 88999999999999987 999888643211 1111    1222222111122267899999976

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.58  E-value=0.0044  Score=50.36  Aligned_cols=77  Identities=10%  Similarity=-0.004  Sum_probs=47.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeec-ccCccccCCcCEEEEccCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-dl~~~~~~~~d~vi~~a~~  107 (259)
                      .++++++|+|+ |..|++++..|.+.|...|+++.|...+.......+.....+..+.. +-......++|+|||+...
T Consensus       123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~  200 (282)
T TIGR01809       123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA  200 (282)
T ss_pred             cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence            45789999985 99999999999999987799998864433322222111111111110 1001114678999998754

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.58  E-value=0.03  Score=45.82  Aligned_cols=97  Identities=10%  Similarity=0.115  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      .-++|.| ||||-+|+.+.+.|.+++..  +++.+..........+  .+  .+-++..-++.+.++.++|+++. +|..
T Consensus         2 ~~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i--~f--~g~~~~V~~l~~~~f~~vDia~f-ag~~   75 (322)
T PRK06901          2 ATLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGI--RF--NNKAVEQIAPEEVEWADFNYVFF-AGKM   75 (322)
T ss_pred             CcceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEE--EE--CCEEEEEEECCccCcccCCEEEE-cCHH
Confidence            3468999 99999999999999998765  2444443211111111  11  12234445666666889999998 6521


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceee
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~  151 (259)
                                        ..+..+..+.+.|..+|=-||..-+
T Consensus        76 ------------------~s~~~ap~a~~aG~~VIDnSsa~Rm  100 (322)
T PRK06901         76 ------------------AQAEHLAQAAEAGCIVIDLYGICAA  100 (322)
T ss_pred             ------------------HHHHHHHHHHHCCCEEEECChHhhC
Confidence                              2245666777888888877776544

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.57  E-value=0.016  Score=50.59  Aligned_cols=76  Identities=16%  Similarity=0.140  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      .+++|+|+| .|..|.++++.|.+.|+. |.+.++++..........+...++.++.++.....+.++|.||...|..
T Consensus        13 ~~~~i~v~G-~G~sG~a~a~~L~~~G~~-V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~   88 (458)
T PRK01710         13 KNKKVAVVG-IGVSNIPLIKFLVKLGAK-VTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMR   88 (458)
T ss_pred             cCCeEEEEc-ccHHHHHHHHHHHHCCCE-EEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCC
Confidence            467999999 588999999999999998 9999876433221111112223666666554333356789999987654

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.55  E-value=0.024  Score=44.78  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=29.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~   68 (259)
                      +++|.|.|++|-+|+.+++.+.+.. ...+-++.|.+.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~   39 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS   39 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc
Confidence            6899999999999999999999886 444555555443

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.53  E-value=0.0031  Score=49.27  Aligned_cols=36  Identities=28%  Similarity=0.415  Sum_probs=31.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (259)
                      |+|.|+||+|.+|+.++..|.+.|++ |.+..|+.+.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~-V~v~~r~~~~   36 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNK-IIIGSRDLEK   36 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCE-EEEEEcCHHH
Confidence            68999999999999999999999988 8888875443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.038  Score=44.65  Aligned_cols=93  Identities=20%  Similarity=0.289  Sum_probs=55.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh-------ccCCCc-----------eeEeecc----
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-------WIGHPR-----------FELIRHD----   89 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-------~~~~~~-----------~~~~~~d----   89 (259)
                      +.=|+|.| .|.+|+|++..|++.|...+.+++-..- +...+..       ..+.++           +.+...|    
T Consensus        74 ~syVVVVG-~GgVGSwv~nmL~RSG~qKi~iVDfdqV-SlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~  151 (430)
T KOG2018|consen   74 NSYVVVVG-AGGVGSWVANMLLRSGVQKIRIVDFDQV-SLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNM  151 (430)
T ss_pred             CcEEEEEe-cCchhHHHHHHHHHhcCceEEEechhhc-cHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHh
Confidence            34577777 5889999999999999986666653211 1111110       001111           1111111    


Q ss_pred             ---cCccc---cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEE
Q 025022           90 ---VTEPL---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL  143 (259)
Q Consensus        90 ---l~~~~---~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i  143 (259)
                         ..+.+   .+++|.|+.|.                 .|++.-..++++|.++|.++|
T Consensus       152 l~~~~s~edll~gnPdFvvDci-----------------DNidtKVdLL~y~~~~~l~Vi  194 (430)
T KOG2018|consen  152 LWTSSSEEDLLSGNPDFVVDCI-----------------DNIDTKVDLLEYCYNHGLKVI  194 (430)
T ss_pred             hcCCCchhhhhcCCCCeEeEhh-----------------hhhhhhhHHHHHHHHcCCceE
Confidence               11111   56788888876                 267777789999999988665

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=96.49  E-value=0.012  Score=50.98  Aligned_cols=73  Identities=15%  Similarity=0.164  Sum_probs=50.0

Q ss_pred             ccCCCEEEEEcC----------------chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCc
Q 025022           29 FQSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE   92 (259)
Q Consensus        29 ~~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~   92 (259)
                      ++.+++||||+|                ||-+|.+|++++..+|++ |+.+.-...-.        ...+++.+..+-.+
T Consensus       253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~-VtlI~Gp~~~~--------~p~~v~~i~V~ta~  323 (475)
T PRK13982        253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAE-VTLISGPVDLA--------DPQGVKVIHVESAR  323 (475)
T ss_pred             ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCc-EEEEeCCcCCC--------CCCCceEEEecCHH
Confidence            478999999976                688999999999999999 77776322110        12345555443222


Q ss_pred             cc------cCCcCEEEEccCCCCc
Q 025022           93 PL------LIEVDQIYHLACPASP  110 (259)
Q Consensus        93 ~~------~~~~d~vi~~a~~~~~  110 (259)
                      +-      ....|++|++|++...
T Consensus       324 eM~~av~~~~~~Di~I~aAAVaDy  347 (475)
T PRK13982        324 QMLAAVEAALPADIAIFAAAVADW  347 (475)
T ss_pred             HHHHHHHhhCCCCEEEEeccccce
Confidence            21      2247999999998764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.47  E-value=0.0082  Score=44.70  Aligned_cols=38  Identities=18%  Similarity=0.343  Sum_probs=33.0

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      .+..+++|+|+|+++.+|..+++.|.++|.+ |+++.|.
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~-V~v~~r~   77 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNAT-VTVCHSK   77 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCE-EEEEECC
Confidence            3577899999999777899999999999997 8888874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=96.46  E-value=0.011  Score=56.05  Aligned_cols=105  Identities=10%  Similarity=0.099  Sum_probs=71.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~   87 (259)
                      +...+|||.|. |.+|.++++.|...|...+.+++...-..                      .+.++++.+...++...
T Consensus        22 L~~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~  100 (1008)
T TIGR01408        22 MAKSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSS  100 (1008)
T ss_pred             HhhCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEec
Confidence            45679999996 77999999999999988788877532110                      12223333334555666


Q ss_pred             cccCccccCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC--CeEEEEecceeec
Q 025022           88 HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYG  152 (259)
Q Consensus        88 ~dl~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~i~~Ss~~~~~  152 (259)
                      .++.+..+.++|+||.+-.                 +......+-++|++++  +.||+.++.+.+|
T Consensus       101 ~~l~~e~l~~fdvVV~t~~-----------------~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G  150 (1008)
T TIGR01408       101 VPFNEEFLDKFQCVVLTEM-----------------SLPLQKEINDFCHSQCPPIAFISADVRGLFG  150 (1008)
T ss_pred             ccCCHHHHcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCeEEEEEeecceEE
Confidence            6665444788999998532                 1223346778999998  6888888776655

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.46  E-value=0.042  Score=45.17  Aligned_cols=97  Identities=16%  Similarity=0.253  Sum_probs=53.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-cCCcCEEEEccCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLACPA  108 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~d~vi~~a~~~  108 (259)
                      +++|.|.|+||-+|+.+++.|.++...  .+.++.+.. .......++.+ .. ..+.-+..+.. +.++|+++.++|-.
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~r-SaG~~~~~f~~-~~-~~v~~~~~~~~~~~~~Divf~~ag~~   77 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASAR-SAGKKYIEFGG-KS-IGVPEDAADEFVFSDVDIVFFAAGGS   77 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEeccc-ccCCccccccC-cc-ccCccccccccccccCCEEEEeCchH
Confidence            468999999999999999999996433  122332211 11111011100 01 11111212222 56899999998632


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                        ..+.+...+.+.|+-+|=-||..
T Consensus        78 ------------------~s~~~~p~~~~~G~~VIdnsSa~  100 (334)
T COG0136          78 ------------------VSKEVEPKAAEAGCVVIDNSSAF  100 (334)
T ss_pred             ------------------HHHHHHHHHHHcCCEEEeCCccc
Confidence                              11467777888886455444443

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.45  E-value=0.0079  Score=48.76  Aligned_cols=58  Identities=16%  Similarity=0.218  Sum_probs=44.5

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      .+..+++++|+|.+|.+|+.++..|+++|.+ |+++.|..    ..+.+.                 ..+.|+||++.|.
T Consensus       155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gat-Vtv~~~~t----~~L~~~-----------------~~~aDIvI~AtG~  212 (283)
T PRK14192        155 IELAGKHAVVVGRSAILGKPMAMMLLNANAT-VTICHSRT----QNLPEL-----------------VKQADIIVGAVGK  212 (283)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhCCCE-EEEEeCCc----hhHHHH-----------------hccCCEEEEccCC
Confidence            3467899999999999999999999999996 88887621    112111                 2578999998863

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.40  E-value=0.022  Score=50.02  Aligned_cols=73  Identities=22%  Similarity=0.173  Sum_probs=50.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      ..+++|+|.| .|..|.++++.|.+.|+. |.+.++.......    .....++.+..+.-....+.++|.||...|..
T Consensus        13 ~~~~~v~v~G-~G~sG~a~a~~L~~~G~~-V~~~D~~~~~~~~----~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~   85 (473)
T PRK00141         13 ELSGRVLVAG-AGVSGRGIAAMLSELGCD-VVVADDNETARHK----LIEVTGVADISTAEASDQLDSFSLVVTSPGWR   85 (473)
T ss_pred             ccCCeEEEEc-cCHHHHHHHHHHHHCCCE-EEEECCChHHHHH----HHHhcCcEEEeCCCchhHhcCCCEEEeCCCCC
Confidence            4568899999 688999999999999997 9998875332211    11122566655432222355789999987765

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=96.33  E-value=0.053  Score=46.61  Aligned_cols=105  Identities=10%  Similarity=0.113  Sum_probs=66.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~   87 (259)
                      +...+|+|.|++ .+|..+++.|.-.|...+++++...-..                      .+.+.++.+...++++.
T Consensus        18 L~~s~VlliG~g-glGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~   96 (425)
T cd01493          18 LESAHVCLLNAT-ATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVE   96 (425)
T ss_pred             HhhCeEEEEcCc-HHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            456799999865 5999999999999987688887542111                      01122332233445554


Q ss_pred             cccCc-----cc-cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           88 HDVTE-----PL-LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        88 ~dl~~-----~~-~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      .+..+     .+ +.++|+||.+-.                 +......+.+.|.+.++.+|+.+|.+.||
T Consensus        97 e~~~~ll~~~~~f~~~fdiVI~t~~-----------------~~~~~~~L~~~c~~~~iPlI~~~s~G~~G  150 (425)
T cd01493          97 ESPEALLDNDPSFFSQFTVVIATNL-----------------PESTLLRLADVLWSANIPLLYVRSYGLYG  150 (425)
T ss_pred             cccchhhhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEecccCEE
Confidence            44322     11 567888875321                 11122347788888888999999988776

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.32  E-value=0.019  Score=49.44  Aligned_cols=38  Identities=32%  Similarity=0.319  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (259)
                      |..|+|.|.| .|++|..++..|.+.|++ |+++++++..
T Consensus         1 m~~~kI~VIG-lG~~G~~~A~~La~~G~~-V~~~D~~~~~   38 (415)
T PRK11064          1 MSFETISVIG-LGYIGLPTAAAFASRQKQ-VIGVDINQHA   38 (415)
T ss_pred             CCccEEEEEC-cchhhHHHHHHHHhCCCE-EEEEeCCHHH
Confidence            4568999998 699999999999999998 9999986543

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=96.29  E-value=0.065  Score=42.61  Aligned_cols=68  Identities=16%  Similarity=0.091  Sum_probs=46.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHL  104 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~  104 (259)
                      +++|||+|||+ =|+.|++.|.+.|+. |++........       .....+....+-+.+.+       ..+++.||..
T Consensus         2 ~~~IlvlgGT~-egr~la~~L~~~g~~-v~~Svat~~g~-------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDA   72 (248)
T PRK08057          2 MPRILLLGGTS-EARALARALAAAGVD-IVLSLAGRTGG-------PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDA   72 (248)
T ss_pred             CceEEEEechH-HHHHHHHHHHhCCCe-EEEEEccCCCC-------cccCCceEEECCCCCHHHHHHHHHHCCCCEEEEC
Confidence            57899999987 599999999999988 55544332222       11235667777773433       4689999987


Q ss_pred             cCCC
Q 025022          105 ACPA  108 (259)
Q Consensus       105 a~~~  108 (259)
                      .-++
T Consensus        73 THPf   76 (248)
T PRK08057         73 THPY   76 (248)
T ss_pred             CCcc
Confidence            6443

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.29  E-value=0.011  Score=50.21  Aligned_cols=35  Identities=17%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      ..++|.|.||.|.+|..+++.|.+.|+. |++.+++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~-V~~~d~~  131 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQ-VRILEQD  131 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCe-EEEeCCC
Confidence            4579999999999999999999999998 9999874

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.23  E-value=0.01  Score=44.78  Aligned_cols=38  Identities=21%  Similarity=0.142  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      ...+++|.|+| .|.||+.+++.|..-|.+ |++.+|...
T Consensus        33 ~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~-V~~~d~~~~   70 (178)
T PF02826_consen   33 ELRGKTVGIIG-YGRIGRAVARRLKAFGMR-VIGYDRSPK   70 (178)
T ss_dssp             -STTSEEEEES-TSHHHHHHHHHHHHTT-E-EEEEESSCH
T ss_pred             ccCCCEEEEEE-EcCCcCeEeeeeecCCce-eEEecccCC
Confidence            36789999999 699999999999999998 999998654

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.22  E-value=0.0086  Score=50.75  Aligned_cols=75  Identities=16%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~  109 (259)
                      ..+++++|.|+ |-+|.-++++|.+.|...|+++.|...+..+..+.+    +..++..+-....+...|+||.+.|-..
T Consensus       176 L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~----~~~~~~l~el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         176 LKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKL----GAEAVALEELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             cccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHh----CCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence            67899999995 999999999999999887888888544433333332    3444444444444788999999876544

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.20  E-value=0.0072  Score=52.28  Aligned_cols=67  Identities=22%  Similarity=0.222  Sum_probs=44.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |+|.|+||+|.+|.++++.|.+.|+. |++++|+.....+....    .++.+ ..|. .....++|+||.+..
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~-V~v~~r~~~~~~~~a~~----~gv~~-~~~~-~e~~~~aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFE-VIVTGRDPKKGKEVAKE----LGVEY-ANDN-IDAAKDADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCE-EEEEECChHHHHHHHHH----cCCee-ccCH-HHHhccCCEEEEecC
Confidence            68999999999999999999999988 99988854322111111    12221 1111 112567899988763

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.20  E-value=0.15  Score=44.47  Aligned_cols=120  Identities=12%  Similarity=0.023  Sum_probs=69.2

Q ss_pred             EEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCccccccC
Q 025022           37 VTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYN  116 (259)
Q Consensus        37 ItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~~~~~~~  116 (259)
                      |+||+|.+|.++++.|...|.+ |+...+......                  ...  ..+++.+++-+..      ...
T Consensus        43 l~~~~~g~~~~~~~~~~~~g~~-v~~~~~~~~~~~------------------~~~--~~~~~~~~~d~~~------~~~   95 (450)
T PRK08261         43 LVGGAGRLAEALAALLAGLGYD-VVANNDGGLTWA------------------AGW--GDRFGALVFDATG------ITD   95 (450)
T ss_pred             EEccCchhHHHHHHHHhhCCCe-eeecCccccccc------------------cCc--CCcccEEEEECCC------CCC
Confidence            7788899999999999999998 888765332110                  000  1244544432211      111


Q ss_pred             hhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh--
Q 025022          117 PVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH--  194 (259)
Q Consensus       117 ~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--  194 (259)
                      .+.... -.......++.+.. +.+||+++|.....                   ....|..+|.+.+.+.+.++++.  
T Consensus        96 ~~~l~~-~~~~~~~~l~~l~~-~griv~i~s~~~~~-------------------~~~~~~~akaal~gl~rsla~E~~~  154 (450)
T PRK08261         96 PADLKA-LYEFFHPVLRSLAP-CGRVVVLGRPPEAA-------------------ADPAAAAAQRALEGFTRSLGKELRR  154 (450)
T ss_pred             HHHHHH-HHHHHHHHHHhccC-CCEEEEEccccccC-------------------CchHHHHHHHHHHHHHHHHHHHhhc
Confidence            222111 11122222333222 22999999864321                   11248999999999999988875  


Q ss_pred             CCcEEEEEec
Q 025022          195 GIEIRIARIF  204 (259)
Q Consensus       195 ~~~~~~lr~~  204 (259)
                      ++.+..+.++
T Consensus       155 gi~v~~i~~~  164 (450)
T PRK08261        155 GATAQLVYVA  164 (450)
T ss_pred             CCEEEEEecC
Confidence            5666666654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.19  E-value=0.0072  Score=49.48  Aligned_cols=70  Identities=17%  Similarity=0.103  Sum_probs=46.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      ...+++++|+|. |.+|+.++..|...|.+ |++.+|+.... ...+.    .+.+.+..+-......++|+||++.
T Consensus       149 ~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~-V~v~~r~~~~~-~~~~~----~G~~~~~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        149 TIHGSNVLVLGF-GRTGMTLARTLKALGAN-VTVGARKSAHL-ARITE----MGLSPFHLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCE-EEEEECCHHHH-HHHHH----cCCeeecHHHHHHHhCCCCEEEECC
Confidence            346799999996 88999999999999997 99998864321 11111    1333332211112267899999976

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=96.18  E-value=0.018  Score=46.40  Aligned_cols=101  Identities=14%  Similarity=0.116  Sum_probs=67.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----cCCcCEEEEccC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----LIEVDQIYHLAC  106 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----~~~~d~vi~~a~  106 (259)
                      .+.+|+|.+|+|-+|+-+.+-..-+|++ |+++.-..++-+-....+--...+++...|+....    -+++|+.|.|.|
T Consensus       150 ~GetvvVSaAaGaVGsvvgQiAKlkG~r-VVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVG  228 (340)
T COG2130         150 AGETVVVSAAAGAVGSVVGQIAKLKGCR-VVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVG  228 (340)
T ss_pred             CCCEEEEEecccccchHHHHHHHhhCCe-EEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCC
Confidence            3789999999999999888777777998 99988754443322221211234455445444333    578999998887


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHH-hCC--eEEEEecceeecCC
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKR-VGA--RILLTSTSEVYGDP  154 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~--~~i~~Ss~~~~~~~  154 (259)
                      -                      .+++++-. .+.  |++..+-++.|+.+
T Consensus       229 g----------------------~v~DAv~~~ln~~aRi~~CG~IS~YN~~  257 (340)
T COG2130         229 G----------------------EVLDAVLPLLNLFARIPVCGAISQYNAP  257 (340)
T ss_pred             c----------------------hHHHHHHHhhccccceeeeeehhhcCCC
Confidence            3                      24444432 222  99999999999864

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.18  E-value=0.0079  Score=49.64  Aligned_cols=74  Identities=20%  Similarity=0.292  Sum_probs=47.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      ..+++|+|.|+ |-+|..+++.|...|...|+++.|+..+... +...++   ...+..+-......++|+||.+.+..
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~-la~~~g---~~~~~~~~~~~~l~~aDvVi~at~~~  249 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEE-LAKELG---GNAVPLDELLELLNEADVVISATGAP  249 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HHHHcC---CeEEeHHHHHHHHhcCCEEEECCCCC
Confidence            46899999996 9999999999998886658888875433222 222222   22322221111156789999987643

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PLN00203 glutamyl-tRNA reductase

Probab=96.14  E-value=0.011  Score=52.18  Aligned_cols=77  Identities=21%  Similarity=0.265  Sum_probs=49.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +.+++|+|+|+ |.+|..+++.|...|...|+++.|+..... .+...++...+.+...+-......++|+||.+.+..
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~-~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~  340 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVA-ALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE  340 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHH-HHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence            56899999997 999999999999999866888888644332 222222111222222221112267899999876533

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.14  E-value=0.0085  Score=50.12  Aligned_cols=77  Identities=16%  Similarity=0.172  Sum_probs=47.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----cCCcCEEEEcc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----LIEVDQIYHLA  105 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----~~~~d~vi~~a  105 (259)
                      ..+++|||.||+|.+|++.++.+...+...|+...+.  ...+..+++-...-+++-..|..+.-    .+++|+|+.|+
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~--e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~v  233 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSK--EKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCV  233 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEccc--chHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECC
Confidence            4578999999999999999999999994424444432  22233333211112333332222222    34799999999


Q ss_pred             CCC
Q 025022          106 CPA  108 (259)
Q Consensus       106 ~~~  108 (259)
                      |..
T Consensus       234 g~~  236 (347)
T KOG1198|consen  234 GGS  236 (347)
T ss_pred             CCC
Confidence            853

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.13  E-value=0.11  Score=40.41  Aligned_cols=71  Identities=13%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      .++++|+|.|| |-++..=++.|++.|.. |+++...-   .+.+..+....+++++..+....++.+++.||-+.
T Consensus        23 ~~~~~VLVVGG-G~VA~RK~~~Ll~~gA~-VtVVap~i---~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaAT   93 (223)
T PRK05562         23 SNKIKVLIIGG-GKAAFIKGKTFLKKGCY-VYILSKKF---SKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIAT   93 (223)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEcCCC---CHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECC
Confidence            45789999996 89999989999999998 88886432   22333333346788998888777788888887654

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.13  E-value=0.0088  Score=53.04  Aligned_cols=38  Identities=18%  Similarity=0.248  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .+++++++|+|+ |.+|++++..|.+.|++ |+++.|...
T Consensus       376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~-V~i~nR~~e  413 (529)
T PLN02520        376 PLAGKLFVVIGA-GGAGKALAYGAKEKGAR-VVIANRTYE  413 (529)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCCE-EEEEcCCHH
Confidence            356789999998 89999999999999995 998888533

>PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis []

Probab=96.12  E-value=0.032  Score=46.53  Aligned_cols=100  Identities=12%  Similarity=0.027  Sum_probs=64.8

Q ss_pred             cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      +.+++.+|++-|..+..... .......+..+....+++.+.    +.+. ++|.++|....                 .
T Consensus       201 l~~i~t~is~LGsts~~a~~-s~~~~~~IDy~Lnl~laq~f~~~~~~~~~K~~vIvTSfn~~-----------------~  262 (410)
T PF08732_consen  201 LDDIKTMISTLGSTSAQAKS-SKAARHKIDYQLNLDLAQTFANDIKNTGNKKLVIVTSFNNN-----------------A  262 (410)
T ss_pred             hhhhhhheecCCCChhhccc-cccchhhccccccHHHHHHhhhhhccCCCceEEEEEecCcc-----------------h
Confidence            55678888888876542211 111222334555556666665    4555 88888886421                 3


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN  212 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~  212 (259)
                      .+...+|...|...|.-+.......--..+|+|||.+.|....
T Consensus       263 ~s~~f~Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~  305 (410)
T PF08732_consen  263 ISSMFPYFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS  305 (410)
T ss_pred             hhhhhhhhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence            3455679999999999887764432246899999999996544

It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.12  E-value=0.009  Score=51.53  Aligned_cols=74  Identities=23%  Similarity=0.300  Sum_probs=47.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      ..+++|+|+|+ |.+|..+++.|...|...|++..|+...... +...++   ...+..+-......++|+||.+.+..
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~-la~~~g---~~~~~~~~~~~~l~~aDvVI~aT~s~  253 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEE-LAEEFG---GEAIPLDELPEALAEADIVISSTGAP  253 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH-HHHHcC---CcEeeHHHHHHHhccCCEEEECCCCC
Confidence            56789999985 9999999999999998658888885433222 222221   12222111111256789999987643

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.09  E-value=0.071  Score=42.99  Aligned_cols=33  Identities=21%  Similarity=0.431  Sum_probs=26.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDN   65 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r   65 (259)
                      ++|.|.|++|.+|+.+++.+.+. +.+.|.+++|
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~   35 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFER   35 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            69999999999999999999875 6663444443

>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.08  E-value=0.039  Score=43.24  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=27.2

Q ss_pred             CCCEEE-EEcCchhhhHHHHHHHHhcCCCeEEEEc
Q 025022           31 SNMRIL-VTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (259)
Q Consensus        31 ~~~~vl-ItGatG~iG~~l~~~L~~~g~~~V~~~~   64 (259)
                      ..+++. |+|+||-+|+.++..|.++.+..+.++.
T Consensus         2 a~kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLg   36 (361)
T KOG4777|consen    2 ALKKSAPVLGATGAVGQRFISLLSDHPYFSIKVLG   36 (361)
T ss_pred             CcccccceeeccchhHHHHHHHhccCCcceeeeec
Confidence            445555 9999999999999999998776566664

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.04  E-value=0.01  Score=51.14  Aligned_cols=75  Identities=19%  Similarity=0.335  Sum_probs=48.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      ...+++|+|+|+ |.+|..+++.|...|...|+++.|+...... +...+.   ...+..+-......++|+||.+.+..
T Consensus       177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~-la~~~g---~~~i~~~~l~~~l~~aDvVi~aT~s~  251 (417)
T TIGR01035       177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAED-LAKELG---GEAVKFEDLEEYLAEADIVISSTGAP  251 (417)
T ss_pred             CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHcC---CeEeeHHHHHHHHhhCCEEEECCCCC
Confidence            356789999996 9999999999999995558888885433221 222111   12222221112256899999987643

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.03  E-value=0.02  Score=46.24  Aligned_cols=58  Identities=14%  Similarity=0.222  Sum_probs=44.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +..+++++|+|.++.+|+.++..|.++|.+ |+.+.++..    .+.+                 ...+.|+||.+.|..
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gat-Vtv~~s~t~----~l~~-----------------~~~~ADIVIsAvg~p  212 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNAS-VTILHSRSK----DMAS-----------------YLKDADVIVSAVGKP  212 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeCCch----hHHH-----------------HHhhCCEEEECCCCC
Confidence            567999999999999999999999999998 777765321    1111                 145789999888754

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.99  E-value=0.018  Score=46.61  Aligned_cols=78  Identities=15%  Similarity=0.156  Sum_probs=49.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccC-CcCEEEEccCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-EVDQIYHLACP  107 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~-~~d~vi~~a~~  107 (259)
                      +..+++++|.|| |..+++++..|++.|..+++++.|..++..+ +.+.+..........+..+.+.. ..|++||+-..
T Consensus       123 ~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~-La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~  200 (283)
T COG0169         123 DVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEE-LADLFGELGAAVEAAALADLEGLEEADLLINATPV  200 (283)
T ss_pred             ccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HHHHhhhcccccccccccccccccccCEEEECCCC
Confidence            345789999995 8899999999999998769999886554333 32222211111111222222222 58999998754


Q ss_pred             C
Q 025022          108 A  108 (259)
Q Consensus       108 ~  108 (259)
                      .
T Consensus       201 G  201 (283)
T COG0169         201 G  201 (283)
T ss_pred             C
Confidence            3

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.97  E-value=0.27  Score=39.60  Aligned_cols=70  Identities=21%  Similarity=0.198  Sum_probs=40.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ++||.|.|. |.||+.+++.|.+. +.. +.++..... ........... ++. ...|+.+. ..++|+|+.+++.
T Consensus         1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~-l~~v~~~~~-~~~~~~~~~~~-~~~-~~~d~~~l-~~~~DvVve~t~~   71 (265)
T PRK13303          1 MMKVAMIGF-GAIGAAVLELLEHDPDLR-VDWVIVPEH-SIDAVRRALGE-AVR-VVSSVDAL-PQRPDLVVECAGH   71 (265)
T ss_pred             CcEEEEECC-CHHHHHHHHHHhhCCCce-EEEEEEcCC-CHHHHhhhhcc-CCe-eeCCHHHh-ccCCCEEEECCCH
Confidence            479999997 99999999999886 344 444442211 11111221111 111 22333322 3578999998864

>PRK14852 hypothetical protein; Provisional

Probab=95.95  E-value=0.081  Score=49.77  Aligned_cols=104  Identities=12%  Similarity=0.035  Sum_probs=65.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC--C--------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--S--------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~--------------------~~~~~~~~~~~~~~~~~   87 (259)
                      +.+.+|+|.| .|.+|..+++.|...|...+.+++...-.  +                    .+.+++.....+++.+.
T Consensus       330 L~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~  408 (989)
T PRK14852        330 LLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP  408 (989)
T ss_pred             HhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence            3467999999 58899999999999998867777643211  0                    01112222223555565


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      ..+....    +.++|+||.+.-..               ....-..+.+.|.+.++.+|+.++..
T Consensus       409 ~~I~~en~~~fl~~~DiVVDa~D~~---------------~~~~rr~l~~~c~~~~IP~I~ag~~G  459 (989)
T PRK14852        409 EGVAAETIDAFLKDVDLLVDGIDFF---------------ALDIRRRLFNRALELGIPVITAGPLG  459 (989)
T ss_pred             cCCCHHHHHHHhhCCCEEEECCCCc---------------cHHHHHHHHHHHHHcCCCEEEeeccc
Confidence            5554433    67899999765211               01122456677888888888877643

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.94  E-value=0.041  Score=45.57  Aligned_cols=75  Identities=17%  Similarity=0.195  Sum_probs=50.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc---------chhhhccCCCceeEeecccCccc-----
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---------DNLRKWIGHPRFELIRHDVTEPL-----   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---------~~~~~~~~~~~~~~~~~dl~~~~-----   94 (259)
                      ...+|++.|.| .|.||+.+++.|..-|.+ |++.++......         ..+.+++....+-.+..-++++.     
T Consensus       139 el~gkTvGIiG-~G~IG~~va~~l~afgm~-v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~  216 (324)
T COG0111         139 ELAGKTVGIIG-LGRIGRAVAKRLKAFGMK-VIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN  216 (324)
T ss_pred             cccCCEEEEEC-CCHHHHHHHHHHHhCCCe-EEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccC
Confidence            46799999999 699999999999999999 999998332211         22444444344444445555544     


Q ss_pred             ------cCCcCEEEEcc
Q 025022           95 ------LIEVDQIYHLA  105 (259)
Q Consensus        95 ------~~~~d~vi~~a  105 (259)
                            .+.--++||+|
T Consensus       217 ~~~~a~MK~gailIN~a  233 (324)
T COG0111         217 AEELAKMKPGAILINAA  233 (324)
T ss_pred             HHHHhhCCCCeEEEECC
Confidence                  33334777766

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.91  E-value=0.17  Score=38.83  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=31.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      +..++|+|.|+ |.+|+.+++.|...|...+++++..
T Consensus        19 L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        19 LEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45689999996 8899999999999998668888875

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=95.88  E-value=0.23  Score=34.50  Aligned_cols=84  Identities=15%  Similarity=0.132  Sum_probs=48.8

Q ss_pred             CEEEEEcCc---hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCC
Q 025022           33 MRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (259)
Q Consensus        33 ~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~  109 (259)
                      |+|.|.|++   +-.|..+.+.|.+.|++ |+.+.-+..    .+      .+.. ...++.+ .-..+|.++.+..   
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~-v~~Vnp~~~----~i------~G~~-~y~sl~e-~p~~iDlavv~~~---   64 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYE-VYPVNPKGG----EI------LGIK-CYPSLAE-IPEPIDLAVVCVP---   64 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-E-EEEESTTCS----EE------TTEE--BSSGGG-CSST-SEEEE-S----
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCE-EEEECCCce----EE------CcEE-eeccccC-CCCCCCEEEEEcC---
Confidence            579999987   66899999999999988 888864321    11      1222 1223333 1357898887652   


Q ss_pred             ccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEec
Q 025022          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (259)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss  147 (259)
                                     -..+..+++.|.+.|+ .+++.++
T Consensus        65 ---------------~~~~~~~v~~~~~~g~~~v~~~~g   88 (116)
T PF13380_consen   65 ---------------PDKVPEIVDEAAALGVKAVWLQPG   88 (116)
T ss_dssp             ---------------HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred             ---------------HHHHHHHHHHHHHcCCCEEEEEcc
Confidence                           2233468888888888 7776665

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.88  E-value=0.032  Score=41.12  Aligned_cols=38  Identities=16%  Similarity=0.298  Sum_probs=29.6

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      .+..+|+++|.|.+..+|+.|+..|.++|.. |......
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~at-Vt~~h~~   69 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGAT-VTICHSK   69 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHHHHTT-E-EEEE-TT
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHHHhCCCe-EEeccCC
Confidence            3477999999999999999999999999998 8777654

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=95.82  E-value=0.029  Score=46.77  Aligned_cols=36  Identities=11%  Similarity=0.061  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+.+|+|+||+|.+|..+++.+...|.+ |+++.++.
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~-Vi~~~~~~  186 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCY-VVGSAGSD  186 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCE-EEEEeCCH
Confidence            4679999999999999999999889998 88877643

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.80  E-value=0.1  Score=45.03  Aligned_cols=76  Identities=17%  Similarity=0.072  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~  109 (259)
                      .+|+|+|.| -|--|.++++.|.++|+. |++.+.++........ ......+.+..+...+.+...+|.||-+=|...
T Consensus         6 ~~~kv~V~G-LG~sG~a~a~~L~~~G~~-v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~   81 (448)
T COG0771           6 QGKKVLVLG-LGKSGLAAARFLLKLGAE-VTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPP   81 (448)
T ss_pred             cCCEEEEEe-cccccHHHHHHHHHCCCe-EEEEcCCCCccchhhh-hhhccCceeecCccchhccccCCEEEECCCCCC
Confidence            489999999 588899999999999998 9999865544211111 111246777777666655778999998777543

>PRK14851 hypothetical protein; Provisional

Probab=95.79  E-value=0.11  Score=47.39  Aligned_cols=102  Identities=10%  Similarity=0.065  Sum_probs=64.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC--C--------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--S--------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~--------------------~~~~~~~~~~~~~~~~~   87 (259)
                      .++.+|+|.| .|.+|+++++.|...|..++++++...-.  +                    .+.+.+......++.+.
T Consensus        41 L~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~  119 (679)
T PRK14851         41 LAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP  119 (679)
T ss_pred             HhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence            4578999999 58899999999999998867777643110  0                    01111122223556666


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEec
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss  147 (259)
                      ..++...    +.++|+||.+.-..               ....-..+.+.|.+.++.+|+.+.
T Consensus       120 ~~i~~~n~~~~l~~~DvVid~~D~~---------------~~~~r~~l~~~c~~~~iP~i~~g~  168 (679)
T PRK14851        120 AGINADNMDAFLDGVDVVLDGLDFF---------------QFEIRRTLFNMAREKGIPVITAGP  168 (679)
T ss_pred             cCCChHHHHHHHhCCCEEEECCCCC---------------cHHHHHHHHHHHHHCCCCEEEeec
Confidence            6665544    67899999765210               011123466788888887776653

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.78  E-value=0.052  Score=44.15  Aligned_cols=96  Identities=15%  Similarity=0.184  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEcc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a  105 (259)
                      .++.+.|+|+.| +|.--++...+.|.+ |++++++..+..+.++.+    +.+.+-.-..+.+     .+-.|.++|++
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~r-V~vis~~~~kkeea~~~L----GAd~fv~~~~d~d~~~~~~~~~dg~~~~v  254 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGMR-VTVISTSSKKKEEAIKSL----GADVFVDSTEDPDIMKAIMKTTDGGIDTV  254 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCcE-EEEEeCCchhHHHHHHhc----CcceeEEecCCHHHHHHHHHhhcCcceee
Confidence            478999999988 998888888888999 999999876666666654    4444433332333     34455566654


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecc
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~  148 (259)
                      ....    ...           ...++++++..| ++|+++-.
T Consensus       255 ~~~a----~~~-----------~~~~~~~lk~~G-t~V~vg~p  281 (360)
T KOG0023|consen  255 SNLA----EHA-----------LEPLLGLLKVNG-TLVLVGLP  281 (360)
T ss_pred             eecc----ccc-----------hHHHHHHhhcCC-EEEEEeCc
Confidence            3111    111           123556666665 77777753

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=95.78  E-value=0.039  Score=44.59  Aligned_cols=71  Identities=13%  Similarity=0.099  Sum_probs=41.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhc--CCCeEEE-EcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIV-VDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |+.++|.|.| .|.||+.+++.|.+.  +.+ +.+ .+|.... .+.+....   +......|+.+. +.++|+|+-++.
T Consensus         4 m~~irIGIIG-~G~IG~~~a~~L~~~~~~~e-l~aV~dr~~~~-a~~~a~~~---g~~~~~~~~eel-l~~~D~Vvi~tp   76 (271)
T PRK13302          4 RPELRVAIAG-LGAIGKAIAQALDRGLPGLT-LSAVAVRDPQR-HADFIWGL---RRPPPVVPLDQL-ATHADIVVEAAP   76 (271)
T ss_pred             CCeeEEEEEC-ccHHHHHHHHHHHhcCCCeE-EEEEECCCHHH-HHHHHHhc---CCCcccCCHHHH-hcCCCEEEECCC
Confidence            6678999999 699999999999873  566 554 4443222 12222111   111111122221 456899998875


Q ss_pred             C
Q 025022          107 P  107 (259)
Q Consensus       107 ~  107 (259)
                      .
T Consensus        77 ~   77 (271)
T PRK13302         77 A   77 (271)
T ss_pred             c
Confidence            4

>PRK07877 hypothetical protein; Provisional

Probab=95.77  E-value=0.074  Score=48.78  Aligned_cols=100  Identities=15%  Similarity=0.124  Sum_probs=64.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCC--CCc-------------------chhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFT--GSK-------------------DNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~--~~~-------------------~~~~~~~~~~~~~~~~   87 (259)
                      .+..+|+|.|. | +|++++..|...|. -.+++++...-  .+.                   ..+.+.....+++.+.
T Consensus       105 L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~  182 (722)
T PRK07877        105 LGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT  182 (722)
T ss_pred             HhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence            34679999999 7 99999999999994 54777775321  111                   1111122223566666


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecc
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~  148 (259)
                      ..++...    +.++|+||.+.-                 |...=..+.++|.+.++.+|+-++.
T Consensus       183 ~~i~~~n~~~~l~~~DlVvD~~D-----------------~~~~R~~ln~~a~~~~iP~i~~~~~  230 (722)
T PRK07877        183 DGLTEDNVDAFLDGLDVVVEECD-----------------SLDVKVLLREAARARRIPVLMATSD  230 (722)
T ss_pred             ccCCHHHHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            6665443    568999998762                 2222235667888888888887754

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.71  E-value=0.11  Score=45.26  Aligned_cols=75  Identities=19%  Similarity=0.157  Sum_probs=51.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +.+++|+|+|+ |..|.++++.|.++|+. |.+.+...... .+.++..  ..++.+..+...+....++|.||...|..
T Consensus         3 ~~~~~~~v~G~-g~~G~~~a~~l~~~g~~-v~~~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~~~~d~vv~spgi~   78 (445)
T PRK04308          3 FQNKKILVAGL-GGTGISMIAYLRKNGAE-VAAYDAELKPERVAQIGKM--FDGLVFYTGRLKDALDNGFDILALSPGIS   78 (445)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence            45789999997 58999999999999998 88887654321 1122111  13566666554433356799999988765

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=95.71  E-value=0.088  Score=43.62  Aligned_cols=36  Identities=17%  Similarity=0.122  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+.+|+|+||+|.+|..+++.+...|.+ |+++.++.
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~-Vi~~~~s~  173 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCK-VVGAAGSD  173 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCE-EEEEeCCH
Confidence            4679999999999999999999888997 88887653

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.71  E-value=0.059  Score=44.63  Aligned_cols=67  Identities=18%  Similarity=0.120  Sum_probs=44.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      +..+|++.|+| .|.||+++++.+..-|.+ |+...|...+..  .+.    ....++.   .++.+.+.|+|+....
T Consensus       143 ~l~gktvGIiG-~GrIG~avA~r~~~Fgm~-v~y~~~~~~~~~--~~~----~~~~y~~---l~ell~~sDii~l~~P  209 (324)
T COG1052         143 DLRGKTLGIIG-LGRIGQAVARRLKGFGMK-VLYYDRSPNPEA--EKE----LGARYVD---LDELLAESDIISLHCP  209 (324)
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHhcCCCE-EEEECCCCChHH--Hhh----cCceecc---HHHHHHhCCEEEEeCC
Confidence            36799999999 799999999999866777 888887643111  111    1233433   3333667787766543

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=95.70  E-value=0.087  Score=44.09  Aligned_cols=96  Identities=14%  Similarity=0.159  Sum_probs=54.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---------------CCCceeEeecccCccccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---------------GHPRFELIRHDVTEPLLI   96 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~~dl~~~~~~   96 (259)
                      ++||.|.|. |.||+.+++.+.++..-+++++..........+....               ....+ .+..+.. ..+.
T Consensus         1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i-~V~~~~~-el~~   77 (341)
T PRK04207          1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGI-PVAGTIE-DLLE   77 (341)
T ss_pred             CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCce-EEcCChh-Hhhc
Confidence            368999998 9999999999987643336666543221111111100               00011 1112211 1145


Q ss_pred             CcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecc
Q 025022           97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~  148 (259)
                      ++|+||.+.+...                  ....++.+.++|+++|+.++.
T Consensus        78 ~vDVVIdaT~~~~------------------~~e~a~~~~~aGk~VI~~~~~  111 (341)
T PRK04207         78 KADIVVDATPGGV------------------GAKNKELYEKAGVKAIFQGGE  111 (341)
T ss_pred             cCCEEEECCCchh------------------hHHHHHHHHHCCCEEEEcCCC
Confidence            7999999875432                  134666777788877777764

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.63  E-value=0.054  Score=49.02  Aligned_cols=67  Identities=15%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      .++|+|+| .|.+|+.+++.|.++|++ +++++.+++    ..+... ..+...+.+|.++++      ..+++.+|-+.
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~~~g~~-vvvID~d~~----~v~~~~-~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~  472 (601)
T PRK03659        400 KPQVIIVG-FGRFGQVIGRLLMANKMR-ITVLERDIS----AVNLMR-KYGYKVYYGDATQLELLRAAGAEKAEAIVITC  472 (601)
T ss_pred             cCCEEEec-CchHHHHHHHHHHhCCCC-EEEEECCHH----HHHHHH-hCCCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence            46799999 599999999999999999 999987533    222221 246789999999988      56788888765

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.62  E-value=0.018  Score=46.74  Aligned_cols=77  Identities=12%  Similarity=0.092  Sum_probs=47.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC-CceeEeecccCc--cccCCcCEEEEccC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTE--PLLIEVDQIYHLAC  106 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~dl~~--~~~~~~d~vi~~a~  106 (259)
                      .++++++|+|+ |+.|++++-.|.+.|...++++.|...+.....+.+... ........+..+  .....+|+|||+..
T Consensus       125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence            45789999996 999999999999999887888888654333222221110 110011122211  12457899999864


Q ss_pred             C
Q 025022          107 P  107 (259)
Q Consensus       107 ~  107 (259)
                      .
T Consensus       204 ~  204 (283)
T PRK14027        204 M  204 (283)
T ss_pred             C
Confidence            3

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.61  E-value=0.013  Score=43.47  Aligned_cols=65  Identities=18%  Similarity=0.132  Sum_probs=40.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      ||+|.+.| .|-+|+.+++.|++.|++ |++.+|+..    ..+.+.+ .+  ...++-..+...++|+|+-+-
T Consensus         1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~-v~~~d~~~~----~~~~~~~-~g--~~~~~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIG-LGNMGSAMARNLAKAGYE-VTVYDRSPE----KAEALAE-AG--AEVADSPAEAAEQADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTTE-EEEEESSHH----HHHHHHH-TT--EEEESSHHHHHHHBSEEEE-S
T ss_pred             CCEEEEEc-hHHHHHHHHHHHHhcCCe-EEeeccchh----hhhhhHH-hh--hhhhhhhhhHhhcccceEeec
Confidence            57899999 599999999999999999 999988533    2222211 12  222222222245679888765

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.61  E-value=0.033  Score=45.33  Aligned_cols=58  Identities=16%  Similarity=0.176  Sum_probs=44.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +..+++|.|.|.+|.+|+.++..|+++|++ |++..+....    +++.                 ..+.|+||-+.|..
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gat-Vtv~~~~t~~----l~e~-----------------~~~ADIVIsavg~~  213 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCS-VTVVHSRSTD----AKAL-----------------CRQADIVVAAVGRP  213 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEECCCCCC----HHHH-----------------HhcCCEEEEecCCh
Confidence            467999999999999999999999999999 8888654321    1111                 34678898887754

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=95.59  E-value=0.3  Score=38.17  Aligned_cols=167  Identities=12%  Similarity=0.080  Sum_probs=85.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC----C---eEEEEcCCCCC-CcchhhhccCCCceeEe----ecccCccccCCcCE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK----N---EVIVVDNYFTG-SKDNLRKWIGHPRFELI----RHDVTEPLLIEVDQ  100 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~----~---~V~~~~r~~~~-~~~~~~~~~~~~~~~~~----~~dl~~~~~~~~d~  100 (259)
                      -+|+||||+|.||.+|+-.+.+ |.    +   ..+.++..+.. ..+.....+....+...    ..+-..+.++++|+
T Consensus         5 irVlVtGAAGqI~ysll~~ia~-G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv~~   83 (332)
T KOG1496|consen    5 IRVLVTGAAGQIGYSLLPMIAR-GIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDVDV   83 (332)
T ss_pred             eEEEeecccchhhHHHHHHHcC-ceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhccCcE
Confidence            5899999999999999877754 32    1   12222221110 01111111111111111    11111222889999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCCCcCCCCCC-CCCCch
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVNPI-GVRSCY  176 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~-~~~~~Y  176 (259)
                      .|...+.+.  ....+..+.+..|+...+.=-.++.+..   ++++.++-.+.-.   .....+..     |. +..+..
T Consensus        84 ailvGa~PR--~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTN---ali~~k~A-----psIP~kNfs  153 (332)
T KOG1496|consen   84 AILVGAMPR--REGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTN---ALILKKFA-----PSIPEKNFS  153 (332)
T ss_pred             EEEeccccC--cccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccc---hhHHhhhC-----CCCchhcch
Confidence            998877653  2233456677888887776666665543   3777665432111   00111111     21 122334


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 025022          177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR  210 (259)
Q Consensus       177 ~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~  210 (259)
                      ..++.-.-+..-+++...+.++.-+.--.+.|..
T Consensus       154 ~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNH  187 (332)
T KOG1496|consen  154 ALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNH  187 (332)
T ss_pred             hhhhhchhhHHHHHHHhhCCchhhcceeEEeccc
Confidence            4555555555556666667766666655666643

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=95.58  E-value=0.2  Score=43.20  Aligned_cols=101  Identities=16%  Similarity=0.151  Sum_probs=62.8

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCC-----CeEEEEcCCCCCCc----------------------chhhhccCCCceeEe
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEK-----NEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELI   86 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~-----~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~   86 (259)
                      +|+|.| .|.+|..+++.|...|.     ..+.+++...-...                      +.+++.....+++.+
T Consensus         1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~   79 (435)
T cd01490           1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL   79 (435)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence            588999 58999999999999998     55888875421110                      011112222344444


Q ss_pred             ecccCc-------cc-cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           87 RHDVTE-------PL-LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        87 ~~dl~~-------~~-~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      ...+..       .+ +.++|+|+++.-                 |+..-..+-+.|...++.+|..++.+..|
T Consensus        80 ~~~v~~~~~~~~~~~f~~~~DvVi~alD-----------------n~~aR~~vn~~C~~~~iPli~~gt~G~~G  136 (435)
T cd01490          80 QNRVGPETEHIFNDEFWEKLDGVANALD-----------------NVDARMYVDRRCVYYRKPLLESGTLGTKG  136 (435)
T ss_pred             ecccChhhhhhhhHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCEEEEeccccee
Confidence            443322       11 567888887641                 33344467788888888888887766544

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=95.57  E-value=0.22  Score=40.56  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=46.4

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----c------------------chhhhccCCCceeEeecccC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----K------------------DNLRKWIGHPRFELIRHDVT   91 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----~------------------~~~~~~~~~~~~~~~~~dl~   91 (259)
                      +|+|.| .|.+|.++++.|...|...+.+++...-..    .                  +.+++..+..+++.+..++.
T Consensus         1 kVlVVG-aGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~   79 (291)
T cd01488           1 KILVIG-AGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ   79 (291)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence            588998 589999999999999988788887532110    0                  11112222235555666665


Q ss_pred             ccc---cCCcCEEEEcc
Q 025022           92 EPL---LIEVDQIYHLA  105 (259)
Q Consensus        92 ~~~---~~~~d~vi~~a  105 (259)
                      +.+   +.++|+||.+.
T Consensus        80 ~~~~~f~~~fdvVi~al   96 (291)
T cd01488          80 DKDEEFYRQFNIIICGL   96 (291)
T ss_pred             chhHHHhcCCCEEEECC
Confidence            443   67899998754

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.53  E-value=0.094  Score=42.80  Aligned_cols=97  Identities=11%  Similarity=0.178  Sum_probs=56.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEc-CCCCCCcchhhhccCCCceeEeecc---cC-ccccCCcCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVD-NYFTGSKDNLRKWIGHPRFELIRHD---VT-EPLLIEVDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~d---l~-~~~~~~~d~vi~  103 (259)
                      |+..++.|.| +|.||..++..+.+. +.+ +.++. ++............   ++.....|   +. +.++.++|+|+.
T Consensus         2 m~klrVAIIG-tG~IGt~hm~~l~~~~~ve-lvAVvdid~es~gla~A~~~---Gi~~~~~~ie~LL~~~~~~dIDiVf~   76 (302)
T PRK08300          2 MSKLKVAIIG-SGNIGTDLMIKILRSEHLE-PGAMVGIDPESDGLARARRL---GVATSAEGIDGLLAMPEFDDIDIVFD   76 (302)
T ss_pred             CCCCeEEEEc-CcHHHHHHHHHHhcCCCcE-EEEEEeCChhhHHHHHHHHc---CCCcccCCHHHHHhCcCCCCCCEEEE
Confidence            4567999999 999999988888865 444 55444 43221111112211   23222112   11 222468999998


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      +.+..                  .....+..+.+.|+++|-.++..
T Consensus        77 AT~a~------------------~H~e~a~~a~eaGk~VID~sPA~  104 (302)
T PRK08300         77 ATSAG------------------AHVRHAAKLREAGIRAIDLTPAA  104 (302)
T ss_pred             CCCHH------------------HHHHHHHHHHHcCCeEEECCccc
Confidence            77421                  22456777778888777776665

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.52  E-value=0.029  Score=45.56  Aligned_cols=65  Identities=22%  Similarity=0.210  Sum_probs=42.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |+|.|.| .|.+|..++..|.+.|+. |++.+++...... ...   ...+.....+.  ....++|+||.+.
T Consensus         1 m~I~IIG-~G~mG~sla~~L~~~g~~-V~~~d~~~~~~~~-a~~---~g~~~~~~~~~--~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVG-LGLIGGSLGLDLRSLGHT-VYGVSRRESTCER-AIE---RGLVDEASTDL--SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEe-ecHHHHHHHHHHHHCCCE-EEEEECCHHHHHH-HHH---CCCcccccCCH--hHhcCCCEEEEcC
Confidence            5799998 799999999999999998 9999885432211 111   11111111121  1256789999876

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=95.51  E-value=0.023  Score=49.81  Aligned_cols=71  Identities=13%  Similarity=0.146  Sum_probs=45.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeec-ccCccccCCcCEEEEccCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-dl~~~~~~~~d~vi~~a~~  107 (259)
                      ++.+++++|+|+ |.+|++++..|.+.|+. |++..|+..+.. .+.+...   ...... ++.  .+.++|+||++...
T Consensus       329 ~~~~k~vlIiGa-GgiG~aia~~L~~~G~~-V~i~~R~~~~~~-~la~~~~---~~~~~~~~~~--~l~~~DiVInatP~  400 (477)
T PRK09310        329 PLNNQHVAIVGA-GGAAKAIATTLARAGAE-LLIFNRTKAHAE-ALASRCQ---GKAFPLESLP--ELHRIDIIINCLPP  400 (477)
T ss_pred             CcCCCEEEEEcC-cHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHHhc---cceechhHhc--ccCCCCEEEEcCCC
Confidence            456789999995 89999999999999996 888877533222 2222111   111111 111  14678999998743

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.48  E-value=0.098  Score=40.46  Aligned_cols=71  Identities=20%  Similarity=0.284  Sum_probs=50.5

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEE
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYH  103 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~  103 (259)
                      .+.++++|+|+|| |-+|..=++.|++.|.. |+++....   .+.+..+....++.++..+....++.+++.||-
T Consensus         8 ~~l~~k~VlvvGg-G~va~rKa~~ll~~ga~-v~Vvs~~~---~~el~~~~~~~~i~~~~~~~~~~~~~~~~lvia   78 (210)
T COG1648           8 LDLEGKKVLVVGG-GSVALRKARLLLKAGAD-VTVVSPEF---EPELKALIEEGKIKWIEREFDAEDLDDAFLVIA   78 (210)
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHhcCCE-EEEEcCCc---cHHHHHHHHhcCcchhhcccChhhhcCceEEEE
Confidence            3467899999996 89999999999999999 88877543   344444444456777775554444555666654

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.46  E-value=0.018  Score=43.99  Aligned_cols=28  Identities=29%  Similarity=0.372  Sum_probs=26.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVI   61 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~   61 (259)
                      |++.|.||+|.+|+.+++.|.+.|+. |+
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~-v~   28 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLG-VY   28 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCE-EE
Confidence            68999999999999999999999998 65

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.44  E-value=0.063  Score=38.64  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      +..+++|.|.|.+.-+|..++..|.++|.+ |....++
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gat-V~~~~~~   61 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGAT-VYSCDWK   61 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeCCC
Confidence            577999999999999999999999999998 8887753

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.42  E-value=0.024  Score=46.08  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=43.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcC----CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENE----KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g----~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |+.|+|.++| .|-+|.++++.|++.|    +. |++..|+.....+.+...   .++... .|.. +...++|+||.+.
T Consensus         1 ~~~mkI~~IG-~G~mG~aia~~l~~~g~~~~~~-v~v~~r~~~~~~~~l~~~---~g~~~~-~~~~-e~~~~aDvVilav   73 (279)
T PRK07679          1 MSIQNISFLG-AGSIAEAIIGGLLHANVVKGEQ-ITVSNRSNETRLQELHQK---YGVKGT-HNKK-ELLTDANILFLAM   73 (279)
T ss_pred             CCCCEEEEEC-ccHHHHHHHHHHHHCCCCCcce-EEEECCCCHHHHHHHHHh---cCceEe-CCHH-HHHhcCCEEEEEe
Confidence            5668999998 7999999999999987    44 888777432222222221   123221 1211 1145789998866

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.39  E-value=0.068  Score=47.97  Aligned_cols=66  Identities=17%  Similarity=0.175  Sum_probs=50.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      -+++|+| .|.+|+.+++.|.++|++ |++++.+++    +.+... ..+...+.+|.++++      .+++|.++-+.
T Consensus       418 ~hiiI~G-~G~~G~~la~~L~~~g~~-vvvId~d~~----~~~~~~-~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~  489 (558)
T PRK10669        418 NHALLVG-YGRVGSLLGEKLLAAGIP-LVVIETSRT----RVDELR-ERGIRAVLGNAANEEIMQLAHLDCARWLLLTI  489 (558)
T ss_pred             CCEEEEC-CChHHHHHHHHHHHCCCC-EEEEECCHH----HHHHHH-HCCCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence            4789999 599999999999999999 999987433    222221 247889999999987      56788777544

>cd08293 PTGR2 Prostaglandin reductase

Probab=95.35  E-value=0.021  Score=47.75  Aligned_cols=35  Identities=20%  Similarity=0.048  Sum_probs=29.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+|+|+||+|.+|..+++.+...|...|+++.++.
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~  190 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSD  190 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence            79999999999999999998888983388887643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=95.28  E-value=0.12  Score=42.76  Aligned_cols=36  Identities=14%  Similarity=0.108  Sum_probs=32.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      ...++++.|.| .|.||+.+++.+..-|.+ |++.++.
T Consensus       142 ~L~gktvGIiG-~G~IG~~vA~~~~~fgm~-V~~~d~~  177 (311)
T PRK08410        142 EIKGKKWGIIG-LGTIGKRVAKIAQAFGAK-VVYYSTS  177 (311)
T ss_pred             ccCCCEEEEEC-CCHHHHHHHHHHhhcCCE-EEEECCC
Confidence            57899999999 699999999999888988 9998874

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.27  E-value=0.037  Score=45.14  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=31.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (259)
                      .++|.|.|+ |.+|..++..|+..|+. |++.++++..
T Consensus         5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~-V~l~d~~~~~   40 (286)
T PRK07819          5 IQRVGVVGA-GQMGAGIAEVCARAGVD-VLVFETTEEL   40 (286)
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCCE-EEEEECCHHH
Confidence            358999995 99999999999999999 9999986554

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.26  E-value=0.17  Score=39.54  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=29.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      ++.+|+|+|. |.+|++.++.|.+.|.-.+.+++-
T Consensus        29 ~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~   62 (263)
T COG1179          29 KQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDM   62 (263)
T ss_pred             hhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEec
Confidence            4678999995 889999999999999886777764

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.26  E-value=0.15  Score=44.66  Aligned_cols=71  Identities=17%  Similarity=0.061  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCchhhhHH-HHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           31 SNMRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~-l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      ++++|+|.|. |..|.+ +++.|.++|++ |.+.+.+.......++    ..++.+..+. ....+.++|.||..-|..
T Consensus         6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~~-V~~~D~~~~~~~~~l~----~~gi~~~~~~-~~~~~~~~d~vv~spgi~   77 (461)
T PRK00421          6 RIKRIHFVGI-GGIGMSGLAEVLLNLGYK-VSGSDLKESAVTQRLL----ELGAIIFIGH-DAENIKDADVVVYSSAIP   77 (461)
T ss_pred             CCCEEEEEEE-chhhHHHHHHHHHhCCCe-EEEECCCCChHHHHHH----HCCCEEeCCC-CHHHCCCCCEEEECCCCC
Confidence            4678999996 669999 89999999999 9999875433211222    2255555433 222355799999987765

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.25  E-value=0.062  Score=41.86  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=30.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      ++++++|+|.| -|.+|+++++.|.+.|...|.+.+.
T Consensus        20 ~l~g~~vaIqG-fGnVG~~~a~~L~~~G~~vV~vsD~   55 (217)
T cd05211          20 SLEGLTVAVQG-LGNVGWGLAKKLAEEGGKVLAVSDP   55 (217)
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            46789999999 6999999999999999984444444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.25  E-value=0.05  Score=34.93  Aligned_cols=35  Identities=34%  Similarity=0.510  Sum_probs=29.5

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~   70 (259)
                      +++|.| +|++|-.++..|.+.|.+ |+++.+++...
T Consensus         1 ~vvViG-gG~ig~E~A~~l~~~g~~-vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIG-GGFIGIELAEALAELGKE-VTLIERSDRLL   35 (80)
T ss_dssp             EEEEES-SSHHHHHHHHHHHHTTSE-EEEEESSSSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHhCcE-EEEEeccchhh
Confidence            578888 499999999999999988 89888865543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.24  E-value=0.028  Score=46.37  Aligned_cols=70  Identities=16%  Similarity=0.161  Sum_probs=43.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccCCCcee-EeecccCccccCCcCEEEEccC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFE-LIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      +..++|.|+| .|.+|..++..|.+.|+ ..|++++|+..... .....    ++. ....+. +....++|+||.+..
T Consensus         4 ~~~~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~-~a~~~----g~~~~~~~~~-~~~~~~aDvViiavp   75 (307)
T PRK07502          4 PLFDRVALIG-IGLIGSSLARAIRRLGLAGEIVGADRSAETRA-RAREL----GLGDRVTTSA-AEAVKGADLVILCVP   75 (307)
T ss_pred             cCCcEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEEECCHHHHH-HHHhC----CCCceecCCH-HHHhcCCCEEEECCC
Confidence            3457899998 79999999999999885 23888888543211 11111    111 111111 112567999998874

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.18  E-value=0.069  Score=43.15  Aligned_cols=59  Identities=15%  Similarity=0.217  Sum_probs=44.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +..+++++|+|-+..+|+.++..|+++|.+ |++..+....    +++.                 ..+.|+||.++|..
T Consensus       156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~at-Vtv~hs~T~~----l~~~-----------------~~~ADIvi~avG~p  213 (285)
T PRK10792        156 DTYGLNAVVVGASNIVGRPMSLELLLAGCT-VTVCHRFTKN----LRHH-----------------VRNADLLVVAVGKP  213 (285)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHCCCe-EEEEECCCCC----HHHH-----------------HhhCCEEEEcCCCc
Confidence            467899999999999999999999999998 7777653211    1111                 34679999888754


Q ss_pred             C
Q 025022          109 S  109 (259)
Q Consensus       109 ~  109 (259)
                      .
T Consensus       214 ~  214 (285)
T PRK10792        214 G  214 (285)
T ss_pred             c
Confidence            3

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=95.18  E-value=0.055  Score=44.72  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+.+++|+||+|.+|..+++.+...|.. |+++.+++
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~-v~~~~~~~  197 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGAR-VIAVTRSP  197 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCe-EEEEeCCH
Confidence            3578999999999999999999999998 88887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.16  E-value=0.06  Score=43.87  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~   64 (259)
                      +..+++|.|.|.++.+|..++..|+++|+. |++..
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~t-Vtv~~  189 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAANAT-VTIAH  189 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhCCCE-EEEEC
Confidence            467999999999999999999999999999 88874

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.16  E-value=0.21  Score=43.84  Aligned_cols=75  Identities=11%  Similarity=0.012  Sum_probs=49.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +.+++|+|.|. |--|.+.++.|.+.|.. |++.+.+.........++ .. ....+.+.-....+.++|.||..-|..
T Consensus         6 ~~~~~v~v~G~-G~sG~~~~~~l~~~g~~-v~~~d~~~~~~~~~~~~l-~~-~~~~~~~~~~~~~~~~~d~vV~SpgI~   80 (468)
T PRK04690          6 LEGRRVALWGW-GREGRAAYRALRAHLPA-QALTLFCNAVEAREVGAL-AD-AALLVETEASAQRLAAFDVVVKSPGIS   80 (468)
T ss_pred             cCCCEEEEEcc-chhhHHHHHHHHHcCCE-EEEEcCCCcccchHHHHH-hh-cCEEEeCCCChHHccCCCEEEECCCCC
Confidence            45789999997 88999999999999999 888885433222111122 11 233433333333356789999987765

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.13  E-value=0.12  Score=45.68  Aligned_cols=72  Identities=13%  Similarity=0.097  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~  109 (259)
                      .+++|+|+| .|-.|.+.++.|.+.|++ |++.+++... ...++.    .++.++.++-....+.++|.||...|...
T Consensus        11 ~~~~v~V~G-~G~sG~aa~~~L~~~G~~-v~~~D~~~~~-~~~l~~----~g~~~~~~~~~~~~l~~~D~VV~SpGi~~   82 (488)
T PRK03369         11 PGAPVLVAG-AGVTGRAVLAALTRFGAR-PTVCDDDPDA-LRPHAE----RGVATVSTSDAVQQIADYALVVTSPGFRP   82 (488)
T ss_pred             CCCeEEEEc-CCHHHHHHHHHHHHCCCE-EEEEcCCHHH-HHHHHh----CCCEEEcCcchHhHhhcCCEEEECCCCCC
Confidence            468999999 588999999999999998 8888864321 111211    25555544332223567899999888653

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=95.09  E-value=0.19  Score=39.98  Aligned_cols=70  Identities=24%  Similarity=0.389  Sum_probs=43.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~a  105 (259)
                      |+|||+|||+ =|+.|++.|.++|+ .++.+.-+...  .....  .........+-+.+.+       ..+++.||...
T Consensus         1 m~ILvlgGTt-E~r~la~~L~~~g~-v~~sv~t~~g~--~~~~~--~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDAT   74 (249)
T PF02571_consen    1 MKILVLGGTT-EGRKLAERLAEAGY-VIVSVATSYGG--ELLKP--ELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDAT   74 (249)
T ss_pred             CEEEEEechH-HHHHHHHHHHhcCC-EEEEEEhhhhH--hhhcc--ccCCceEEECCCCCHHHHHHHHHhCCCcEEEECC
Confidence            7999999987 49999999999997 33333321111  11111  1135566777773433       46899999876


Q ss_pred             CCC
Q 025022          106 CPA  108 (259)
Q Consensus       106 ~~~  108 (259)
                      -++
T Consensus        75 HPf   77 (249)
T PF02571_consen   75 HPF   77 (249)
T ss_pred             Cch
Confidence            443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.08  E-value=0.27  Score=41.12  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=29.8

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+.+|+|+|+ |.+|...++.+...|...|+++++++
T Consensus       169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~  204 (343)
T PRK09880        169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSP  204 (343)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence            4679999986 99999999999888986587777654

>PRK06849 hypothetical protein; Provisional

Probab=95.07  E-value=0.04  Score=47.04  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      +.|+|||||+...+|..+++.|.+.|++ |++++..+
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~-Vi~~d~~~   38 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHT-VILADSLK   38 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCc
Confidence            4689999999999999999999999998 88887753

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.06  E-value=0.09  Score=42.89  Aligned_cols=76  Identities=7%  Similarity=-0.013  Sum_probs=46.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC--CCcchhhhccCC---CceeEeecccC---ccccCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRKWIGH---PRFELIRHDVT---EPLLIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--~~~~~~~~~~~~---~~~~~~~~dl~---~~~~~~~d~v  101 (259)
                      .++++++|+|+ |..+++++-.|...|..+|+++.|...  ...+.+.+.+..   ..+.+...+-.   .....+.|+|
T Consensus       122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDiv  200 (288)
T PRK12749        122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL  200 (288)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEE
Confidence            46789999996 666999999999999877999988643  122233322211   11223222110   1124578999


Q ss_pred             EEccC
Q 025022          102 YHLAC  106 (259)
Q Consensus       102 i~~a~  106 (259)
                      ||+..
T Consensus       201 INaTp  205 (288)
T PRK12749        201 TNGTK  205 (288)
T ss_pred             EECCC
Confidence            99764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	259
4ef7_B	337	Udp-Xylose Synthase Length = 337		6e-94
2b69_A	343	Crystal Structure Of Human Udp-Glucoronic Acid Deca		3e-91
3icp_A	312	Crystal Structure Of Udp-Galactose 4-Epimerase Leng		1e-23
3ehe_A	313	Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-		1e-22
1r66_A	337	Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr		9e-22
1r6d_A	337	Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc		2e-21
3aw9_A	308	Structure Of Udp-Galactose 4-Epimerase Mutant Lengt		6e-21
2bll_A	345	Apo-Structure Of The C-Terminal Decarboxylase Domai		9e-20
1u9j_A	358	Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl		4e-19
1z7b_A	358	Crystal Structure Of E.Coli Arna Dehydrogenase (Dec		4e-19
1z75_A	358	Crystal Structure Of Arna Dehydrogenase (decarboxyl		4e-19
1z74_A	358	Crystal Structure Of E.Coli Arna Dehydrogenase (Dec		4e-19
1z7e_A	660	Crystal Structure Of Full Length Arna Length = 660		5e-19
1z73_A	358	Crystal Structure Of E. Coli Arna Dehydrogenase (de		8e-19
3vps_A	321	Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5		3e-17
2hun_A	336	Crystal Structure Of Hypothetical Protein Ph0414 Fr		2e-16
4egb_A	346	3.0 Angstrom Resolution Crystal Structure Of Dtdp-G		2e-16
2pzj_A	377	Crystal Structure Of The Bordetella Bronchiseptica		2e-16
1g1a_A	361	The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra		2e-16
3slg_A	372	Crystal Structure Of Pbgp3 Protein From Burkholderi		3e-16
1bxk_A	355	Dtdp-Glucose 4,6-Dehydratase From E. Coli Length =		4e-16
2p5u_A	311	Crystal Structure Of Thermus Thermophilus Hb8 Udp-G		5e-15
3lu1_A	364	Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-		2e-14
3ru9_A	351	Specific Recognition Of N-Acetylated Substrates And		2e-14
3ru7_A	351	Specific Recognition Of N-Acetylated Substrates And		2e-14
3ruc_A	351	Specific Recognition Of N-Acetylated Substrates And		2e-14
1kep_A	348	The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra		3e-14
1orr_A	347	Crystal Structure Of Cdp-tyvelose 2-epimerase Compl		6e-14
1sb8_A	352	Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A		7e-14
2pk3_A	321	Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose		6e-13
3sxp_A	362	Crystal Structure Of Helicobacter Pylori Adp-L-Glyc		1e-12
1kvs_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-11
2udp_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		4e-11
1lrk_A	338	Crystal Structure Of Escherichia Coli Udp-Galactose		5e-11
1lrj_A	338	Crystal Structure Of E. Coli Udp-Galactose 4-Epimer		5e-11
1kvr_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		6e-11
1kvq_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		8e-11
1kvt_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		9e-11
1kvu_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		1e-10
4b8w_A	319	Crystal Structure Of Human Gdp-L-Fucose Synthase Wi		1e-10
4b8z_A	320	Crystal Structure Of Human Gdp-l-fucose Synthase Wi		2e-10
1a9y_A	338	Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX		2e-10
1a9z_A	338	Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX		2e-10
1gy8_A	397	Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt		5e-10
2c5e_A	379	Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana		5e-10
2pzk_A	330	Crystal Structure Of The Bordetella Bronchiseptica		6e-10
2c59_A	379	Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana		7e-10
2c54_A	379	Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana		1e-09
2c5a_A	379	Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana		2e-09
2c20_A	330	Crystal Structure Of Udp-Glucose 4-Epimerase Length		2e-09
1z45_A	699	Crystal Structure Of The Gal10 Fusion Protein Galac		2e-07
3m2p_A	311	The Crystal Structure Of Udp-N-Acetylglucosamine 4-		5e-07
1ek5_A	348	Structure Of Human Udp-Galactose 4-Epimerase In Com		8e-07
1hzj_A	348	Human Udp-Galactose 4-Epimerase: Accommodation Of U		8e-07
1i3k_A	348	Molecular Basis For Severe Epimerase-Deficiency Gal		9e-07
2q1w_A	333	Crystal Structure Of The Bordetella Bronchiseptica		3e-06
1wvg_A	359	Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal		5e-05
2gn4_A	344	Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehyd		2e-04
3enk_A	341	1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F		2e-04
1db3_A	372	E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372		6e-04
3a1n_A	317	Crystal Structure Of L-Threonine Dehydrogenase From		7e-04

>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343

Iteration: 1
 Score =  331 bits (848), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 156/218 (71%), Positives = 180/218 (82%), Gaps = 1/218 (0%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKL   + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 29  RILITGGAGFVGSHLTDKLXX-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 87
Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLN LGLAKRVGAR+LL STSEVYGD
Sbjct: 88  LYIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLASTSEVYGD 147
Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
           P VHPQ E YWG+VNPIG R+CYDEGKRVAET  + Y +Q G+E+R+ARIFNT+GPR + 
Sbjct: 148 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIFNTFGPRXHX 207
Query: 214 DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           +DGRVVSNFI QA++GEPLTV   G+QTR+F YVSD+V
Sbjct: 208 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 245

>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 115/227 (50%), Gaps = 25/227 (11%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MRI+VTGGAGFIGSHLVDKL+E    EV+VVDN  +G ++ +     +P  EL   D+ +
Sbjct: 1   MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKD 54
Query: 93  PLL---IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTS 148
                 I+ D ++H A           P+     NV+ T N+L  A++ G R ++  S+S
Sbjct: 55  YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSS 114
Query: 149 EVYGDPLV--HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
            VYGD  V   P++E Y     PI   S Y   K   E +   Y R  G+     R  N 
Sbjct: 115 TVYGDADVIPTPEEEPY----KPI---SVYGAAKAAGEVMCATYARLFGVRCLAVRYANV 167
Query: 207 YGPRMNIDDGRVVSNFIAQAIRGEP--LTVQAPGTQTRSFCYVSDMV 251
            GPR+      V+ +FI + +R  P  L V   GTQ +S+ YV D V
Sbjct: 168 VGPRLRHG---VIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAV 210

>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 13/224 (5%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           I+VTGGAGFIGSH+VDKL  +E NE++V+DN  +G+++ + +     + +L   D+ +  
Sbjct: 4   IVVTGGAGFIGSHVVDKL--SESNEIVVIDNLSSGNEEFVNEAARLVKADLAADDIKD-Y 60
Query: 95  LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD 153
           L   ++++H+A          NP +  + NV+ T  +L   ++ G +RI+ TSTS VYG+
Sbjct: 61  LKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGE 120
Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
             V P  E Y    +PI   S Y   K   E L+  Y     ++  I R  N  G R   
Sbjct: 121 AKVIPTPEDY--PTHPI---SLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRST- 174
Query: 214 DDGRVVSNFIAQAIRG-EPLTVQAPGTQTRSFCYVSDMVCKSCF 256
               V+ +FI +  R  E L +   G Q +S+ Y+SD V    F
Sbjct: 175 --HGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLF 216

>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337

Iteration: 1
 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 111/237 (46%), Gaps = 20/237 (8%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
           MR+LVTGGAGFIGSH V +L+         +EVIV+D+  + G++ NL      PR   +
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 87  RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
             D+ +  L+      VD I H A  +             +TNV GT  +L  A   G  
Sbjct: 61  HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
           R++  ST EVYG       D   W   +P+   S Y   K  ++ +   YHR +G+++RI
Sbjct: 121 RVVHVSTDEVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 201 ARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFL 257
            R  N YGP  + +  +++  F+   + G  L +   G   R + +  D  C+   L
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDH-CRGIAL 229

>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
           MR+LVTGGAGFIGSH V +L+         +EVIV+D+  + G++ NL      PR   +
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 87  RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
             D+ +  L+      VD I H A  +             +TNV GT  +L  A   G  
Sbjct: 61  HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
           R++  ST++VYG       D   W   +P+   S Y   K  ++ +   YHR +G+++RI
Sbjct: 121 RVVHVSTNQVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175
Query: 201 ARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFL 257
            R  N YGP  + +  +++  F+   + G  L +   G   R + +  D  C+   L
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDH-CRGIAL 229

>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 111/226 (49%), Gaps = 27/226 (11%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD--NYFTGSKDNLRKWIGHPRFELIRHDV 90
           MRI+VTGGAGFIGSHLVDKL+E    EV+VVD     TG    L     H R +L   D 
Sbjct: 1   MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDIVQRDTGGSAEL-----HVR-DL--KDY 51
Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 149
           +    I+ D ++H A           P+     NV+ T N+L  A++ G R ++  S+S 
Sbjct: 52  SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 111
Query: 150 VYGDPLV--HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTY 207
           VYGD  V   P++E Y     PI   S Y   K   E +   Y R  G+     R  N  
Sbjct: 112 VYGDADVIPTPEEEPY----KPI---SVYGAAKAAGEVMCATYARLFGVRCLAVRYANVV 164
Query: 208 GPRMNIDDGRVVSNFIAQAIRGEP--LTVQAPGTQTRSFCYVSDMV 251
           GPR+      V+ +FI + +R  P  L V   GTQ +S+ YV D V
Sbjct: 165 GPRLRHG---VIYDFIMK-LRRNPNVLEVLGDGTQRKSYLYVRDAV 206

>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 18/233 (7%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           MR+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++ 
Sbjct: 1   MRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISI 56
Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  S
Sbjct: 57  HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 147 TSEVYGDPLVHPQDESYWGN-VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
           TSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176
Query: 205 NTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           N  GPR++      I   R ++  I   + G P+ +   G Q R F  + D +
Sbjct: 177 NWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 229

>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 18/232 (7%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++  
Sbjct: 15  RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 92  ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
               E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  ST
Sbjct: 71  SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 148 SEVYGDPLVHPQDESYWGN-VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
           SEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN
Sbjct: 131 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 190
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             GPR++      I   R ++  I   + G P+ +   G Q R F  + D +
Sbjct: 191 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 242

>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 18/232 (7%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++  
Sbjct: 15  RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 92  ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
               E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  ST
Sbjct: 71  SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 148 SEVYGDPLVHPQDESYWGN-VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
           SEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN
Sbjct: 131 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 190
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             GPR++      I   R ++  I   + G P+ +   G Q R F  + D +
Sbjct: 191 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 242

>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 18/232 (7%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++  
Sbjct: 15  RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 92  ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
               E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  ST
Sbjct: 71  SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 148 SEVYGDPLVHPQDESYWGN-VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
           SEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN
Sbjct: 131 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 190
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             GPR++      I   R ++  I   + G P+ +   G Q R F  + D +
Sbjct: 191 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 242

>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 18/232 (7%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++  
Sbjct: 15  RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 92  ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
               E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  ST
Sbjct: 71  SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 148 SEVYGDPLVHPQDESYWGN-VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
           SEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN
Sbjct: 131 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 190
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             GPR++      I   R ++  I   + G P+ +   G Q R F  + D +
Sbjct: 191 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 242

>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 18/232 (7%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++  
Sbjct: 317 RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 372
Query: 92  ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
               E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  ST
Sbjct: 373 SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 432
Query: 148 SEVYGDPLVHPQDESYWGN-VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
           SEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN
Sbjct: 433 SEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 492
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             GPR++      I   R ++  I   + G P+ +   G Q R F  + D +
Sbjct: 493 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 544

>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358

Iteration: 1
 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 18/232 (7%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++  
Sbjct: 15  RVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIH 70
Query: 92  ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
               E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  ST
Sbjct: 71  SEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPST 130
Query: 148 SEVYGDPLVHPQDESYWGN-VNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
           +EVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN
Sbjct: 131 AEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFN 190
Query: 206 TYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             GPR++      I   R ++  I   + G P+ +   G Q R F  + D +
Sbjct: 191 WMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 242

>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 114/234 (48%), Gaps = 27/234 (11%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG---SKDNLRKWIGHPRFELIRHDV 90
           RIL+TGGAGFIG HL   L+ +   EV V+D+         +   K++  P  EL   D+
Sbjct: 9   RILITGGAGFIGGHLARALVAS-GEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDL 67
Query: 91  TEPLLIEVDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
           +     +V  +YHLA   S P  +K  P+  +  NV    ++L L   VG  ++++ ST 
Sbjct: 68  S-----DVRLVYHLASHKSVPRSFK-QPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTC 120
Query: 149 EVYG--DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI--EIRIARIF 204
           EVYG  D L  P+D       +P+  RS Y   K V   ++   H++  +  E+ I R F
Sbjct: 121 EVYGQADTLPTPED-------SPLSPRSPYAASK-VGLEMVAGAHQRASVAPEVGIVRFF 172
Query: 205 NTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA 258
           N YGP    D   +V    A  +    L V+  G Q R F Y++D+V K   LA
Sbjct: 173 NVYGPGERPD--ALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALA 224

>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 109/229 (47%), Gaps = 16/229 (6%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSK-DNLRKWIGHPRFELIRHD 89
           +M++LVTGG GFIGS+ +  ++E   + EVI +D    GS   NL+     PR+  ++ D
Sbjct: 3   SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGD 62
Query: 90  VTEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARI 142
           V +  L+     +VD + HLA  +       +P   + +NVIGT  +L   +R     R 
Sbjct: 63  VADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRF 122
Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
           +  ST EVYGD L     E+     + +   S Y   K  ++ L+  + R + +   I R
Sbjct: 123 VHVSTDEVYGDILKGSFTEN-----DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITR 177
Query: 203 IFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             N YGP    +  +++   I +A  G  + +   G   R + YV D V
Sbjct: 178 CTNNYGPYQFPE--KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHV 224

>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 17/233 (7%)
Query: 28  FFQSNM-RILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNY-FTGSKDNLRKWIGHPRFE 84
           +FQSN   ILVTGGAGFIGS+ V   +++ E  ++I  D   ++G+ +N++    HP + 
Sbjct: 19  YFQSNAXNILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYY 78
Query: 85  LIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 137
            ++ ++    L+E       V  I + A  +       NP+    TNVIGT+ +L L K+
Sbjct: 79  FVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKK 138
Query: 138 V-GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 196
               +++  ST EVYG           +    P+   S Y   K  A+ +   Y++ + +
Sbjct: 139 YPHIKLVQVSTDEVYGS----LGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQL 194
Query: 197 EIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
            + + R  N YGP    +  +++   +  A+ G+ L +   G   R + +V+D
Sbjct: 195 PVIVTRCSNNYGPYQYPE--KLIPLXVTNALEGKKLPLYGDGLNVRDWLHVTD 245

>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 104/240 (43%), Gaps = 22/240 (9%)
Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +N  ++V GGAGF+GS+LV +L+E   N+V VVDN  +  K N+     HP        +
Sbjct: 31  ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPD---HPAVRFSETSI 87
Query: 91  TEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM---LGLAKRVGARI 142
           T+  L+     E D ++HLA         ++P+   + N + TL +   L   KR+   +
Sbjct: 88  TDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVV 147
Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
              +   +        +       V+     S Y   K   E     YH+QH +    AR
Sbjct: 148 YSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRAR 207
Query: 203 IFNTYGPRMNIDDGR-----------VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             N YGP   +  GR           V   FI +A++G PL ++  G  TR F +V D+ 
Sbjct: 208 FQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVA 267

>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 27/241 (11%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
           M+IL+TGGAGFIGS +V  +++N ++ V+ +D   + G+ ++L       R+     D+ 
Sbjct: 1   MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 92  EPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---- 140
           +   I       + D + HLA  +        P   I+TN++GT  +L +A++  +    
Sbjct: 61  DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 141 ------RILLTSTSEVYGDPLVHPQDES------YWGNVNPIGVRSCYDEGKRVAETLMF 188
                 R    ST EVYGD L HP +         +         S Y   K  ++ L+ 
Sbjct: 121 DKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 189 DYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS 248
            + R +G+   +    N YGP    +  +++   I  A+ G+PL +   G Q R + YV 
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 249 D 249
           D
Sbjct: 238 D 238

>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 25/236 (10%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           ++L+ G  GFIG HL  +++E    EV  +D       D L   + H R      D+T  
Sbjct: 26  KVLILGVNGFIGHHLSKRILETTDWEVFGMDM----QTDRLGDLVKHERMHFFEGDITIN 81
Query: 92  ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
               E  + + D I  L   A+P  Y   P++  + +    L ++  A + G  ++  ST
Sbjct: 82  KEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST 141
Query: 148 SEVYG---DPLVHPQDESY-WGNVN-PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
           SEVYG   D    P   +  +G +N P  + +C    K++ + +++ Y  + G+   + R
Sbjct: 142 SEVYGMCADEQFDPDASALTYGPINKPRWIYAC---SKQLMDRVIWGYGME-GLNFTLFR 197
Query: 203 IFNTYGPRMNI------DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC 252
            FN  GP ++          RVV+ F+   +RGE +++   G+Q R+F YV D + 
Sbjct: 198 PFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGIS 253

>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 23/234 (9%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
           +IL+TGGAGFIGS LV  ++    + V+VVD   + G+  +L       RF   + D+ +
Sbjct: 3   KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 93  PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA---------- 135
              +       + D + HLA  +        P   I+TN++GT  +L  A          
Sbjct: 63  RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 136 KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 195
           K+   R    ST EVYGD  +H  D+ ++    P    S Y   K  ++ L+  + R +G
Sbjct: 123 KKSAFRFHHISTDEVYGD--LHSTDD-FFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 196 IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
           +   I    N YGP    +  +++   I  A+ G+ L V   G Q R + YV D
Sbjct: 180 LPTLITNCSNNYGPYHFPE--KLIPLMILNALAGKSLPVYGNGQQIRDWLYVED 231

>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 15/229 (6%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MR+LVTGGAGFIGSH+V+ L+     EV V+DN  TG ++N+ K +   R +L   +  E
Sbjct: 1   MRVLVTGGAGFIGSHIVEDLLAR-GLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVE 59
Query: 93  PLLIEV--DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS-- 148
               E     + H A  AS      +PV   + N++G LN+L   ++ G   L+ +++  
Sbjct: 60  RAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGG 119
Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
            +YG+     + E  W    P   +S Y   K   E  +  Y + +G++    R  N YG
Sbjct: 120 AIYGEVPEGERAEETW----PPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYG 175
Query: 209 PRMNI-DDGRVVSNFIAQAIRGEPLTVQA---PGTQ--TRSFCYVSDMV 251
           PR +   +  VV+ F  + ++G P+T+ A   PG +   R + YV D+ 
Sbjct: 176 PRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVA 224

>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 26/233 (11%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 42  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 97
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 98  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 157
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
                ++S  YGD    P+ E   G  NP+   S Y   K V E     Y R +G +   
Sbjct: 158 SFTYAASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIG 212
Query: 201 ARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            R FN +G R + +     V+  + A  ++G+ + +   G  +R FCY+ +++
Sbjct: 213 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVI 265

>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 26/233 (11%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 29  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 84
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 85  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
                ++S  YGD    P+ E   G  NP+   S Y   K V E     Y R +G +   
Sbjct: 145 SFTYAASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIG 199
Query: 201 ARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            R FN +G R + +     V+  + A  ++G+ + +   G  +R FCY+ +++
Sbjct: 200 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVI 252

>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 26/233 (11%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 23  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 78
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 79  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 138
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
                ++S  YGD    P+ E   G  NP+   S Y   K V E     Y R +G +   
Sbjct: 139 SFTYAASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIG 193
Query: 201 ARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            R FN +G R + +     V+  + A  ++G+ + +   G  +R FCY+ +++
Sbjct: 194 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVI 246

>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 26/233 (11%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 29  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 84
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 85  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
                ++S  YGD    P+ E   G  NP+   S Y   K V E     Y R +G +   
Sbjct: 145 SFTYAASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTYGFKTIG 199
Query: 201 ARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            R FN +G R + +     V+  + A  ++G+ + +   G  +R FCY+ +++
Sbjct: 200 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVI 252

>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 23/232 (9%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
           I+VTGGAGFIGS+ V  +  N  +  V V+D   + G+K NL   +G  R EL+  D+ +
Sbjct: 7   IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG-DRVELVVGDIAD 65
Query: 93  PLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
             L++      D I H A  +       +P   I TN IGT  +L  A++   R    ST
Sbjct: 66  AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 125
Query: 148 SEVYGD-PLVH--------PQDE-SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE 197
            EVYGD PL          P ++ +   N NP    S Y   K  ++ ++  + R  G++
Sbjct: 126 DEVYGDLPLREDLPGHGEGPGEKFTAETNYNP---SSPYSSTKAASDLIVKAWVRSFGVK 182
Query: 198 IRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
             I+   N YGP  +I+  + +   I   + G    +   G   R + + +D
Sbjct: 183 ATISNCSNNYGPYQHIE--KFIPRQITNILAGIKPKLYGEGKNVRDWIHTND 232

>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 30/246 (12%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELI------ 86
           ++L+TGG GF+GS+L    +  +  ++IV DN    G+ DNL        FE +      
Sbjct: 3   KLLITGGCGFLGSNLASFALS-QGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 61
Query: 87  RHDVTEPLLIEV-DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RIL 143
           ++DVT  +   + D  +HLA   +      NP    + NV GTLN+L   ++  +   I+
Sbjct: 62  KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 121
Query: 144 LTSTSEVYGDPLVHPQDESY-----------WGNVNPIGVRSCYDEGKRVAETLMFDYHR 192
            +ST++VYGD   +  +E+            +     +   S Y   K  A+  M DY R
Sbjct: 122 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 181
Query: 193 QHGIEIRIARIFNTYGPRM--NIDDGRVVSNFIAQAIR-----GEPLTVQAPGTQTRSFC 245
             G+   + R  + YG R     D G  V  F  +A+       +P T+   G Q R   
Sbjct: 182 IFGLNTVVFRHSSMYGGRQFATYDQGW-VGWFCQKAVEIKNGINKPFTISGNGKQVRDVL 240
Query: 246 YVSDMV 251
           +  DM+
Sbjct: 241 HAEDMI 246

>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 26/240 (10%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++ L++ ++ +V+ +DN+ TG + NL         ++W     F+ I
Sbjct: 31  LITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATGHQRNLDEVRSLVSEKQW---SNFKFI 86
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           + D+            VD + H A   S      +P+ +  TN+ G LNML  A+    +
Sbjct: 87  QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 146
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
                ++S  YGD    P+ E   G   P+   S Y   K V E     + R +G     
Sbjct: 147 SFTYAASSSTYGDHPGLPKVEDTIG--KPL---SPYAVTKYVNELYADVFSRCYGFSTIG 201
Query: 201 ARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA 258
            R FN +G R + +     V+  + +  I+G+ + +   G  +R FCY+ + V  +   A
Sbjct: 202 LRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAA 261

>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 108/241 (44%), Gaps = 29/241 (12%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           +MR L+TG AGF+G +L + L E +  EV      F  S++N  K    P  E+I  D+ 
Sbjct: 12  SMRALITGVAGFVGKYLANHLTE-QNVEV------FGTSRNNEAKL---PNVEMISLDIM 61
Query: 92  EPLL-------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVGARI 142
           +          I+ D I+HLA  +S      N   T  TNV GTL++L   +   +  RI
Sbjct: 62  DSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRI 121
Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
           L   +SE YG  ++ P+ ES     N +   S Y   K     L   Y + +G++I   R
Sbjct: 122 LTIGSSEEYG--MILPE-ESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTR 178
Query: 203 IFNTYGPRMNIDDGRVVSNFIAQAI-----RGEPLTVQAPGTQTRSFCYVSDMVCKSCFL 257
            FN  GP  ++  G V  +F  Q +     + EP+         R F  V D+V     L
Sbjct: 179 TFNHIGPGQSL--GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLL 236
Query: 258 A 258
           +
Sbjct: 237 S 237

>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 41/244 (16%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGS--KDNLRKWIGH------PR 82
           N  IL+TGGAGF+GS+L     EN  K +V+V+D + + +   +N    +GH       +
Sbjct: 10  NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFK 69
Query: 83  FELIRHDVTEPL------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
            E+I  D+  PL       +  D ++H A  +       N    +KTN    LN+L +A+
Sbjct: 70  GEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM--LNQELVMKTNYQAFLNLLEIAR 127
Query: 137 RVGARILLTSTSEVYGD---PLVHPQDESYWGNVNPIGV----RSCYDEGKRVAETLMFD 189
              A+++  S++ VYG+   P V  ++ES      P  V    + C DE           
Sbjct: 128 SKKAKVIYASSAGVYGNTKAPNVVGKNES------PENVYGFSKLCMDE--------FVL 173
Query: 190 YHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV 247
            H    +++ + R FN YGPR    +    +V      A+  + + +   G Q R F Y+
Sbjct: 174 SHSNDNVQVGL-RYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYI 232
Query: 248 SDMV 251
            D++
Sbjct: 233 EDVI 236

>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 114/248 (45%), Gaps = 37/248 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
             + +ST+ VYGD    P  ES+     P G  +S Y + K + E ++ D  + Q    I
Sbjct: 118 NFIFSSTATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNID---DGRVVSN----FIAQAIRG--EPLTV------QAPGTQTRS 243
            + R FN  G   + D   D + + N    +IAQ   G  + L +         GT  R 
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMV 251
           + +V D+ 
Sbjct: 233 YIHVMDLA 240

>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 37/248 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
             + +S++ VYGD    P  ES+     P G  +S Y + K + E ++ D  + Q    I
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNID---DGRVVSN----FIAQAIRG--EPLTV------QAPGTQTRS 243
            + R FN  G   + D   D + + N    +IAQ   G  + L +         GT  R 
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMV 251
           + +V D+ 
Sbjct: 233 YIHVMDLA 240

>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 37/248 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
             + +S++ VYGD    P  ES+     P G  +S Y + K + E ++ D  + Q    I
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNID---DGRVVSN----FIAQAIRG--EPLTV------QAPGTQTRS 243
            + R FN  G   + D   D + + N    +IAQ   G  + L +         GT  R 
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMV 251
           + +V D+ 
Sbjct: 233 YIHVMDLA 240

>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 37/248 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
             + +S++ VYGD    P  ES+     P G  +S Y + K + E ++ D  + Q    I
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNID---DGRVVSN----FIAQAIRG--EPLTV------QAPGTQTRS 243
            + R FN  G   + D   D + + N    +IAQ   G  + L +         GT  R 
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMV 251
           + +V D+ 
Sbjct: 233 YIHVMDLA 240

>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 37/248 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
             + +S + VYGD    P  ES+     P G  +S Y + K + E ++ D  + Q    I
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNID---DGRVVSN----FIAQAIRG--EPLTV------QAPGTQTRS 243
            + R FN  G   + D   D + + N    +IAQ   G  + L +         GT  R 
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMV 251
           + +V D+ 
Sbjct: 233 YIHVMDLA 240

>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 37/248 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
             + +S + VYGD    P  ES+     P G  +S Y + K + E ++ D  + Q    I
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNID---DGRVVSN----FIAQAIRG--EPLTV------QAPGTQTRS 243
            + R FN  G   + D   D + + N    +IAQ   G  + L +         GT  R 
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMV 251
           + +V D+ 
Sbjct: 233 YIHVMDLA 240

>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 37/248 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
             + +S + VYGD    P  ES+     P G  +S Y + K + E ++ D  + Q    I
Sbjct: 118 NFIFSSVATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNID---DGRVVSN----FIAQAIRG--EPLTV------QAPGTQTRS 243
            + R FN  G   + D   D + + N    +IAQ   G  + L +         GT  R 
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMV 251
           + +V D+ 
Sbjct: 233 YIHVMDLA 240

>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 37/248 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
             + +S++ VYGD    P  ES+     P G  +S + + K + E ++ D  + Q    I
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNID---DGRVVSN----FIAQAIRG--EPLTV------QAPGTQTRS 243
            + R FN  G   + D   D + + N    +IAQ   G  + L +         GT  R 
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMV 251
           + +V D+ 
Sbjct: 233 YIHVMDLA 240

>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With Bound Nadp And Gdp, Tetragonal Crystal Form Length = 319

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 101/235 (42%), Gaps = 25/235 (10%)
Query: 28  FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR 87
           +FQS MRILVTGG+G +G   + K++ +    +   D  F  SKD           +L  
Sbjct: 3   YFQS-MRILVTGGSGLVGK-AIQKVVADGAG-LPGEDWVFVSSKDA----------DLTD 49
Query: 88  HDVTEPLLIEVD--QIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
              T  L  +V    + HLA     +F   KYN +   + NV    N+L  A  VGAR +
Sbjct: 50  TAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKV 108
Query: 144 LTSTSE-VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
           ++  S  ++ D   +P DE+   N  P      Y   KR+ +     Y +Q+G       
Sbjct: 109 VSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVI 168
Query: 203 IFNTYGPR--MNIDDGRVVSNFIAQA----IRGEPLTVQAPGTQTRSFCYVSDMV 251
             N +GP    NI+DG V+   I +       G  LTV   G   R F Y  D+ 
Sbjct: 169 PTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLA 223

>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With Bound Nadp And Gdp, Rhombohedral Crystal Form Length = 320

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 101/235 (42%), Gaps = 25/235 (10%)
Query: 28  FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR 87
           +FQS MRILVTGG+G +G   + K++ +    +   D  F  SKD           +L  
Sbjct: 4   YFQS-MRILVTGGSGLVGK-AIQKVVADGAG-LPGEDWVFVSSKDA----------DLTD 50
Query: 88  HDVTEPLLIEVD--QIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
              T  L  +V    + HLA     +F   KYN +   + NV    N+L  A  VGAR +
Sbjct: 51  TAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYN-LDFWRKNVHMNDNVLHSAFEVGARKV 109
Query: 144 LTSTSE-VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
           ++  S  ++ D   +P DE+   N  P      Y   KR+ +     Y +Q+G       
Sbjct: 110 VSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVI 169
Query: 203 IFNTYGPR--MNIDDGRVVSNFIAQA----IRGEPLTVQAPGTQTRSFCYVSDMV 251
             N +GP    NI+DG V+   I +       G  LTV   G   R F Y  D+ 
Sbjct: 170 PTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLA 224

>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 37/248 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
             + +S + VYGD    P  ES+     P G  +S + + K + E ++ D  + Q    I
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNID---DGRVVSN----FIAQAIRG--EPLTV------QAPGTQTRS 243
            + R FN  G   + D   D + + N    +IAQ   G  + L +         GT  R 
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMV 251
           + +V D+ 
Sbjct: 233 YIHVMDLA 240

>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 113/248 (45%), Gaps = 37/248 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAETLMFDYHR-QHGIEI 198
             + +S + VYGD    P  ES+     P G  +S + + K + E ++ D  + Q    I
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESF-----PTGTPQSPFGKSKLMVEQILTDLQKAQPDWSI 172
Query: 199 RIARIFNTYGPRMNID---DGRVVSN----FIAQAIRG--EPLTV------QAPGTQTRS 243
            + R FN  G   + D   D + + N    +IAQ   G  + L +         GT  R 
Sbjct: 173 ALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRD 232
Query: 244 FCYVSDMV 251
           + +V D+ 
Sbjct: 233 YIHVMDLA 240

>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 39/220 (17%)
Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRKWIGHPRFELIRH 88
           S+MR+LV GGAG+IGSH V  L+ +  + V++VD+     G  D++       R +L + 
Sbjct: 1   SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVAR-KLQQS 59
Query: 89  DVTEPLLIE-------------------------VDQIYHLACPASPIFYKYNPVKTIKT 123
           D  +P   +                         +D + H+    +      +P+K    
Sbjct: 60  DGPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDN 119
Query: 124 NVIGTLNML-GLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV------RSCY 176
           NV+G L +L  +      +I+ +S++ ++G+P +     S   N  PI +       S Y
Sbjct: 120 NVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTM----GSVSTNAEPIDINAKKSPESPY 175
Query: 177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG 216
            E K +AE ++ D    +GI+    R FN  G   + D G
Sbjct: 176 GESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIG 215

>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 23/259 (8%)
Query: 8   GNHNSASKPPPTPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66
           G  N       T   L   +++ S N++I +TG  GFI SH+  +L ++E + VI  D  
Sbjct: 4   GTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRL-KHEGHYVIASD-- 60
Query: 67  FTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPASPI-FYKYNPVKTIK 122
                +++ + +    F L+   V E  L     VD +++LA     + F + N    + 
Sbjct: 61  -WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMY 119
Query: 123 TNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD------PLVHPQDESYWGNVNPIGVRSC 175
            N + + NM+  A+  G  R    S++ +Y +        V  ++   W    P   +  
Sbjct: 120 NNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW----PAEPQDA 175
Query: 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVV--SNFIAQA-IRGEPL 232
           Y   K   E L   Y++  GIE RI R  N YGP      GR    + F  +A    +  
Sbjct: 176 YGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDRF 235
Query: 233 TVQAPGTQTRSFCYVSDMV 251
            +   G QTRSF ++ + V
Sbjct: 236 EMWGDGLQTRSFTFIDECV 254

>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           S+MRIL+TGGAG +GS+L++  +  + +E++V+DN+ TG ++ L    G     +I   V
Sbjct: 19  SHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDNFATGKREVLPPVAG---LSVIEGSV 74
Query: 91  TEPLLIE--VDQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGARILLT 145
           T+  L+E   D         S   YK +P    +   TNV G++N+   A + G + LL 
Sbjct: 75  TDAGLLERAFDSFKPTHVVHSAAAYK-DPDDWAEDAATNVQGSINVAKAASKAGVKRLLN 133
Query: 146 -STSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
             T+  YG P   P         +P    + Y   K   E  +        + +   R+ 
Sbjct: 134 FQTALCYGRPATVPIPID-----SPTAPFTSYGISKTAGEAFLM----MSDVPVVSLRLA 184
Query: 205 NTYGPRMNI 213
           N  GPR+ I
Sbjct: 185 NVTGPRLAI 193

>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 23/259 (8%)
Query: 8   GNHNSASKPPPTPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66
           G  N       T   L   +++ S N++I +TG  GFI SH+  +L ++E + VI  D  
Sbjct: 4   GTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRL-KHEGHYVIASD-- 60
Query: 67  FTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPASPI-FYKYNPVKTIK 122
                +++ + +    F L+   V E  L     VD +++LA     + F + N    + 
Sbjct: 61  -WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMY 119
Query: 123 TNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD------PLVHPQDESYWGNVNPIGVRSC 175
            N + + NM+  A+  G  R    S++ +Y +        V  ++   W    P   +  
Sbjct: 120 NNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW----PAEPQDA 175
Query: 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQA-IRGEPL 232
           Y   K   E L   Y++  GIE RI R  N YGP      GR    + F  +A    +  
Sbjct: 176 YGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRF 235
Query: 233 TVQAPGTQTRSFCYVSDMV 251
            +   G QTRSF ++ + V
Sbjct: 236 EMWGDGLQTRSFTFIDECV 254

>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 23/259 (8%)
Query: 8   GNHNSASKPPPTPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66
           G  N       T   L   +++ S N++I +TG  GFI SH+  +L ++E + VI  D  
Sbjct: 4   GTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRL-KHEGHYVIASD-- 60
Query: 67  FTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPASPI-FYKYNPVKTIK 122
                +++ + +    F L+   V E  L     VD +++LA     + F + N    + 
Sbjct: 61  -WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMY 119
Query: 123 TNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD------PLVHPQDESYWGNVNPIGVRSC 175
            N + + NM+  A+  G  R    S++ +Y +        V  ++   W    P   +  
Sbjct: 120 NNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW----PAEPQDA 175
Query: 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQA-IRGEPL 232
           Y   +   E L   Y++  GIE RI R  N YGP      GR    + F  +A    +  
Sbjct: 176 YGLERLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRF 235
Query: 233 TVQAPGTQTRSFCYVSDMV 251
            +   G QTRSF ++ + V
Sbjct: 236 EMWGDGLQTRSFTFIDECV 254

>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 23/259 (8%)
Query: 8   GNHNSASKPPPTPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY 66
           G  N       T   L   +++ S N++I +TG  GFI SH+  +L ++E + VI  D  
Sbjct: 4   GTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRL-KHEGHYVIASD-- 60
Query: 67  FTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPASPI-FYKYNPVKTIK 122
                +++ + +    F L+   V E  L     VD +++LA     + F + N    + 
Sbjct: 61  -WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMY 119
Query: 123 TNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD------PLVHPQDESYWGNVNPIGVRSC 175
            N + + NM+  A+  G  R    S++ +Y +        V  ++   W    P   +  
Sbjct: 120 NNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW----PAEPQDA 175
Query: 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQA-IRGEPL 232
           +   K   E L   Y++  GIE RI R  N YGP      GR    + F  +A    +  
Sbjct: 176 FGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRF 235
Query: 233 TVQAPGTQTRSFCYVSDMV 251
            +   G QTRSF ++ + V
Sbjct: 236 EMWGDGLQTRSFTFIDECV 254

>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 13/183 (7%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK----WIGHPRFELIRHDV 90
           IL+ GGAG+IGSH V KL++ E   V+VVDN  TG +D + +    + G  R +    DV
Sbjct: 4   ILICGGAGYIGSHAVKKLVD-EGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDV 62
Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE 149
                IE   + H A  +        P++    NV G L +L +       + + +ST+ 
Sbjct: 63  FTQENIEA--VMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAA 120
Query: 150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209
            YG+  V    E      NP    + Y E K   E ++  Y +   +  +I R FN  G 
Sbjct: 121 TYGEVDVDLITEETM--TNPT---NTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGA 175
Query: 210 RMN 212
             N
Sbjct: 176 TPN 178

>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 24/191 (12%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-------IGHPRFELIR 87
           +LVTGGAG+IGSH V +L+EN   + +V DN    + D++ +        I     +L  
Sbjct: 14  VLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 72
Query: 88  HDVTEPLLIE--VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILL 144
               E +  E  +D + H A   +       P++    N++GT+ +L L ++   ++ + 
Sbjct: 73  RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVF 132
Query: 145 TSTSEVYGDPLVHPQ-----DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR--QHGIE 197
           +S++ VYGD    P      +E   G  NP      Y   K   E ++ D +   +   +
Sbjct: 133 SSSATVYGDATRFPNMIPIPEECPLGPTNP------YGHTKYAIENILNDLYNSDKKSWK 186
Query: 198 IRIARIFNTYG 208
             I R FN  G
Sbjct: 187 FAILRYFNPIG 197

>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 93/234 (39%), Gaps = 32/234 (13%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR---FELIRHD 89
           ++I VTGG GF+G ++V+ + +N+ N  I+           L + IG+     +E    D
Sbjct: 3   LKIAVTGGTGFLGQYVVESI-KNDGNTPII-----------LTRSIGNKAINDYEYRVSD 50
Query: 90  VTEPLLI----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILL 144
            T   LI    +VD + HLA            +     N I T N+         + I+ 
Sbjct: 51  YTLEDLINQLNDVDAVVHLAATRGS----QGKISEFHDNEILTQNLYDACYENNISNIVY 106
Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
            ST   Y D    P +E       P+     Y   K   E +   Y R+ G+ I+  R  
Sbjct: 107 ASTISAYSDETSLPWNEKEL----PL-PDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
Query: 205 NTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA 258
           + YG   N  +   ++ F  QA  GE LT+ A     R F Y  D   KS   A
Sbjct: 162 HLYG--FNEKNNYXINRFFRQAFHGEQLTLHANSVAKREFLYAKD-AAKSVIYA 212

>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 19/156 (12%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLR-------KWIGH 80
           ++LVTGGAG+IGSH V +L+E     V V+DN+   F G     ++LR       + +  
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81  PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              +++     + L  +     + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIG 171
           G + ++ +S++ VYG+P   P DE++   G  NP G
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYG 158

>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 19/156 (12%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLR-------KWIGH 80
           ++LVTGGAG+IGSH V +L+E     V V+DN+   F G     ++LR       + +  
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81  PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              +++     + L  +     + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIG 171
           G + ++ +S++ VYG+P   P DE++   G  NP G
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYG 158

>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 19/156 (12%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLR-------KWIGH 80
           ++LVTGGAG+IGSH V +L+E     V V+DN+   F G     ++LR       + +  
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81  PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              +++     + L  +     + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIG 171
           G + ++ +S++ VYG+P   P DE++   G  NP G
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYG 158

>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 26/187 (13%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ++ +TG  G IGSH+ + L+E   ++V+ +DN+ TG +++L+    HP    +   + + 
Sbjct: 23  KVFITGICGQIGSHIAELLLE-RGDKVVGIDNFATGRREHLKD---HPNLTFVEGSIADH 78
Query: 94  LLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILL 144
            L+       + D + H A         YN      TN +G  N++  AK+  VG R + 
Sbjct: 79  ALVNQLIGDLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAAKKNNVG-RFVY 134
Query: 145 TSTSEVYG-DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
             T+  YG  P+  P    +  N       S Y   K   E    DY    G++    R+
Sbjct: 135 FQTALCYGVKPIQQPVRLDHPRNP----ANSSYAISKSANE----DYLEYSGLDFVTFRL 186
Query: 204 FNTYGPR 210
            N  GPR
Sbjct: 187 ANVVGPR 193

>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 39/208 (18%)
Query: 27  KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------KDNL 74
           K F    R+ VTG  GF GS L   L E       +V  Y   +             D +
Sbjct: 4   KNFWQGKRVFVTGHTGFKGSWLSLWLTEMGA----IVKGYALDAPTVPSLFEIVRLNDLM 59
Query: 75  RKWIGHPR-FELIRHDVTEPLLIEVDQIYHLAC-PASPIFYKYNPVKTIKTNVIGTLNML 132
              IG  R FE +R  + E    + + ++H+A  P   + Y+  P+KT  TNV+GT+++L
Sbjct: 60  ESHIGDIRDFEKLRSSIAE---FKPEIVFHMAAQPLVRLSYE-QPIKTYSTNVMGTVHLL 115
Query: 133 GLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWG--NVNPIGVRSCYDEGKRVAETLMFD 189
              K+VG  + ++  TS+   D       E  WG     P+G    Y   K  AE +   
Sbjct: 116 ETVKQVGNIKAVVNITSDKCYD-----NREWVWGYRENEPMGGYDPYSNSKGCAELVASA 170
Query: 190 Y---------HRQHGIEIRIARIFNTYG 208
           +         + QHG+ +   R  N  G
Sbjct: 171 FRNSFFNPANYEQHGVGLASVRAGNVIG 198

>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase In Complex With Nadph And Udp-Glcnac Length = 344

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           N  IL+TGG G  G   V K+++    + I+V +     +  +      PR      DV 
Sbjct: 21  NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVR 80
Query: 92  EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
           +       L  VD   H A        +YNP++ IKTN++G  N++    +     ++  
Sbjct: 81  DLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIAL 140
Query: 147 TSEVYGDPL 155
           +++   +P+
Sbjct: 141 STDKAANPI 149

>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTGGAG+IGSH   +L+ +   +V++ DN     ++ +       R E I      P 
Sbjct: 8   ILVTGGAGYIGSHTAVELLAH-GYDVVIADNLVNSKREAI------ARIEKITGKT--PA 58
Query: 95  LIEVDQIYHLACP----ASPIFYK--YNPVKTIKTNVIGTLNMLG------------LAK 136
             E D     A      A PI     +  +K +  +V   +                + +
Sbjct: 59  FHETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRE 118
Query: 137 RVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD 189
           R   RI+ +S++ VYG P   P DE++     P+   + Y + K +AE ++ D
Sbjct: 119 RAVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRD 166

>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 25/193 (12%)
Query: 36  LVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSK-DNLRK--WIGHPRFELIRHDV 90
           L+TG  G  GS+L + L+E   E + +    + F   + D++ +     +P+F L   D+
Sbjct: 5   LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDL 64
Query: 91  TEP-----LLIEV--DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM------LGLAKR 137
           ++      +L EV  D++Y+L   +       +P  T   + +GTL +      LGL K+
Sbjct: 65  SDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKK 124
Query: 138 VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE 197
              R    STSE+YG     PQ E+      P   RS Y   K  A  +  +Y   +G+ 
Sbjct: 125 T--RFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGMY 177
Query: 198 IRIARIFNTYGPR 210
                +FN   PR
Sbjct: 178 ACNGILFNHESPR 190

>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTG +G IG+ LV  L E    + ++       + D +++  G  +F  I  DV+   
Sbjct: 2   ILVTGSSGQIGTELVPYLAEKYGKKNVI-------ASDIVQRDTGGIKF--ITLDVSNRD 52
Query: 95  LIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVGARILLT 145
            I+       +D I+HLA   S    K +P    K N+ GT N+L  AK  RV  ++++ 
Sbjct: 53  EIDRAVEKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRV-EKVVIP 110
Query: 146 STSEVYGDPLVHPQDESYWGNVNPIGV---RSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
           ST  V+G        E+    V  I +   R+ Y   K  AE L   Y+ + G+++R  R
Sbjct: 111 STIGVFG-------PETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLR 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	1e-156
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	1e-144
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	1e-136
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	1e-130
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	1e-121
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	1e-106
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	8e-89
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	6e-67
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	3e-64
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	2e-63
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	2e-62
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	5e-60
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	2e-56
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	3e-55
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	3e-55
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	1e-51
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	7e-51
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	8e-51
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	2e-49
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	6e-49
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	5e-47
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	3e-46
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	2e-45
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	3e-40
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	1e-39
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	4e-35
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	9e-32
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	4e-30
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	7e-28
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	2e-26
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	6e-26
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	6e-25
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	1e-23
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	3e-21
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	7e-19
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	1e-17
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	1e-17
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	9e-16
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	1e-15
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	4e-15
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	8e-15
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	2e-14
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	4e-14
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	4e-14
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	5e-14
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	2e-13
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	8e-13
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	3e-12
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	2e-10
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	3e-08
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	8e-08
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	3e-06
1xq6_A	253	Unknown protein; structural genomics, protein stru	3e-06
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	4e-06
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	6e-06
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	8e-06
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	2e-05
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	2e-05
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	2e-05
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	5e-05
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	6e-05
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	9e-05
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	2e-04
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	3e-04
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	3e-04
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	4e-04

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343

 Score =  436 bits (1124), Expect = e-156
 Identities = 163/246 (66%), Positives = 193/246 (78%), Gaps = 4/246 (1%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
           S+ +H+ +S            K      RIL+TGGAGF+GSHL DKLM  + +EV VVDN
Sbjct: 4   SHHHHHHSSGRENLYFQGHMEK---DRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDN 59

Query: 66  YFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
           +FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN 
Sbjct: 60  FFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNT 119

Query: 126 IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET 185
           IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG R+CYDEGKRVAET
Sbjct: 120 IGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAET 179

Query: 186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC 245
           + + Y +Q G+E+R+ARIFNT+GPRM+++DGRVVSNFI QA++GEPLTV   G+QTR+F 
Sbjct: 180 MCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQ 239

Query: 246 YVSDMV 251
           YVSD+V
Sbjct: 240 YVSDLV 245

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345

 Score =  407 bits (1049), Expect = e-144
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 18/233 (7%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           MR+L+ G  GFIG+HL ++L+  +  EV  +D       D + +++ HP F  +  D++ 
Sbjct: 1   MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  S
Sbjct: 57  HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116

Query: 147 TSEVYGDPLVHPQDESYWG-NVNPIGV-RSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
           TSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176

Query: 205 NTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           N  GPR++      I   R ++  I   + G P+ +   G Q R F  + D +
Sbjct: 177 NWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 229

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372

 Score =  388 bits (999), Expect = e-136
 Identities = 64/262 (24%), Positives = 114/262 (43%), Gaps = 28/262 (10%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
            + +H+  +    T  P           ++L+ G  GFIG HL  +++E   +  +   +
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMKA-----KKVLILGVNGFIGHHLSKRILE-TTDWEVFGMD 56

Query: 66  YFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVK 119
             T    +L   + H R      D+T      E  + + D I  L   A+P  Y   P++
Sbjct: 57  MQTDRLGDL---VKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLR 113

Query: 120 TIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESY-WGNVNPIGVRSC 175
             + +    L ++  A + G  ++  STSEVYG   D    P   +  +G +N    R  
Sbjct: 114 VFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKP--RWI 171

Query: 176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRG 229
           Y   K++ + +++ Y    G+   + R FN  GP ++          RVV+ F+   +RG
Sbjct: 172 YACSKQLMDRVIWGYGM-EGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRG 230

Query: 230 EPLTVQAPGTQTRSFCYVSDMV 251
           E +++   G+Q R+F YV D +
Sbjct: 231 ENISLVDGGSQKRAFTYVDDGI 252

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379

 Score =  373 bits (960), Expect = e-130
 Identities = 62/257 (24%), Positives = 104/257 (40%), Gaps = 15/257 (5%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFF-QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64
           + G  N       T   L   +++   N++I +TG  GFI SH+  +L   E + VI  D
Sbjct: 2   AMGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKH-EGHYVIASD 60

Query: 65  NYFTGSKDNLRKWIGHPRFELIRHDVTE---PLLIEVDQIYHLACPASPI-FYKYNPVKT 120
                  +++ + +    F L+   V E    +   VD +++LA     + F + N    
Sbjct: 61  ---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVI 117

Query: 121 IKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESY--WGNVNPIGVRSCYD 177
           +  N + + NM+  A+  G  R    S++ +Y +              +  P   +  + 
Sbjct: 118 MYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFG 177

Query: 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQAIRGE-PLTV 234
             K   E L   Y++  GIE RI R  N YGP      GR    + F  +A        +
Sbjct: 178 LEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEM 237

Query: 235 QAPGTQTRSFCYVSDMV 251
              G QTRSF ++ + V
Sbjct: 238 WGDGLQTRSFTFIDECV 254

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377

 Score =  349 bits (898), Expect = e-121
 Identities = 71/270 (26%), Positives = 114/270 (42%), Gaps = 22/270 (8%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           M     + +H+S   P  +  P+  +    +N  ++V GGAGF+GS+LV +L+E   N+V
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-----EVDQIYHLACPASPIFYKY 115
            VVDN  +  K N+     HP        +T+  L+     E D ++HLA         +
Sbjct: 61  HVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIH 117

Query: 116 NPVKTIKTNVIGTLNMLGLA---KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV 172
           +P+   + N + TL +       KR+   +   +   +        +       V+    
Sbjct: 118 DPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNN 177

Query: 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGR-----------VVSN 221
            S Y   K   E     YH+QH +    AR  N YGP   +  GR           V   
Sbjct: 178 DSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPT 237

Query: 222 FIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           FI +A++G PL ++  G  TR F +V D+ 
Sbjct: 238 FIYKALKGMPLPLENGGVATRDFIFVEDVA 267

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321

 Score =  309 bits (793), Expect = e-106
 Identities = 69/226 (30%), Positives = 98/226 (43%), Gaps = 19/226 (8%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR---KWIGHPRFELIR 87
              RIL+TGGAGFIG HL   L+     EV V+D+             K++  P  EL  
Sbjct: 6   LKHRILITGGAGFIGGHLARALVA-SGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEE 64

Query: 88  HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
            D+++     V  +YHLA   S       P+  +  NV    ++L L   VG  ++++ S
Sbjct: 65  RDLSD-----VRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGS 118

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE-IRIARIFN 205
           T EVYG     P  E      +P+  RS Y   K   E +   + R      + I R FN
Sbjct: 119 TCEVYGQADTLPTPED-----SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFN 173

Query: 206 TYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            YGP        +V    A  +    L V+  G Q R F Y++D+V
Sbjct: 174 VYGPGE--RPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVV 217

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312

 Score =  264 bits (678), Expect = 8e-89
 Identities = 79/224 (35%), Positives = 108/224 (48%), Gaps = 19/224 (8%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MRI+VTGGAGFIGSHLVDKL+E    EV+VVDN  +G ++ +     +P  EL   D+ +
Sbjct: 1   MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKD 54

Query: 93  PLL---IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
                 I+ D ++H A           P+     NV+ T N+L  A++ G   ++  S+S
Sbjct: 55  YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSS 114

Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
            VYGD  V P  E       P    S Y   K   E +   Y R  G+     R  N  G
Sbjct: 115 TVYGDADVIPTPEEE-----PYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVG 169

Query: 209 PRMNIDDGRVVSNFIAQAIRG-EPLTVQAPGTQTRSFCYVSDMV 251
           PR+      V+ +FI +  R    L V   GTQ +S+ YV D V
Sbjct: 170 PRL---RHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAV 210

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311

 Score =  208 bits (533), Expect = 6e-67
 Identities = 56/226 (24%), Positives = 84/226 (37%), Gaps = 27/226 (11%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           +++I VTGG GF+G ++V+ +   + N  I++         N         +E    D T
Sbjct: 2   SLKIAVTGGTGFLGQYVVESIKN-DGNTPIILTRSIGNKAIND--------YEYRVSDYT 52

Query: 92  EPLLIE----VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLT 145
              LI     VD + HLA             +     N I T N+         + I+  
Sbjct: 53  LEDLINQLNDVDAVVHLAATRGSQ-----GKISEFHDNEILTQNLYDACYENNISNIVYA 107

Query: 146 STSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
           ST   Y D    P +E       P      Y   K   E +   Y R+ G+ I+  R  +
Sbjct: 108 STISAYSDETSLPWNEKEL--PLPD---LMYGVSKLACEHIGNIYSRKKGLCIKNLRFAH 162

Query: 206 TYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            YG      +  +++ F  QA  GE LT+ A     R F Y  D  
Sbjct: 163 LYGFNE--KNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAA 206

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660

 Score =  211 bits (538), Expect = 3e-64
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 18/237 (7%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
            +   R+L+ G  GFIG+HL ++L+  +  EV  +D       D + +++ HP F  +  
Sbjct: 312 ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEG 367

Query: 89  DVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARI 142
           D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI
Sbjct: 368 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI 427

Query: 143 LLTSTSEVYGDPLVHPQDESYWGNV-NPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
           +  STSEVYG       DE +   +  P+   R  Y   K++ + +++ Y  + G++  +
Sbjct: 428 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 487

Query: 201 ARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            R FN  GPR++      I   R ++  I   + G P+ +   G Q R F  + D +
Sbjct: 488 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 544

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313

 Score =  200 bits (511), Expect = 2e-63
 Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 21/225 (9%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
             I+VTGGAGFIGSH+VDKL E+  NE++V+DN  +G+++ +     +    L++ D+  
Sbjct: 2   SLIVVTGGAGFIGSHVVDKLSES--NEIVVIDNLSSGNEEFV-----NEAARLVKADLAA 54

Query: 93  PLLIE----VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
             + +     ++++H+A      I  + NP +  + NV+ T  +L   ++ G  RI+ TS
Sbjct: 55  DDIKDYLKGAEEVWHIAANPDVRIGAE-NPDEIYRNNVLATYRLLEAMRKAGVSRIVFTS 113

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
           TS VYG+  V P  E Y    +PI   S Y   K   E L+  Y     ++  I R  N 
Sbjct: 114 TSTVYGEAKVIPTPEDY--PTHPI---SLYGASKLACEALIESYCHTFDMQAWIYRFANV 168

Query: 207 YGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            G R     G +    +      E L +   G Q +S+ Y+SD V
Sbjct: 169 IGRRS--THGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCV 211

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score =  198 bits (506), Expect = 2e-62
 Identities = 66/257 (25%), Positives = 110/257 (42%), Gaps = 20/257 (7%)

Query: 9   NHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68
           +H+  S    +       +        L+TG AGFIGS+L++ L++    +V+ +DN+ T
Sbjct: 4   HHHHGSMGMMSRYEELRKELPAQPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLDNFAT 62

Query: 69  GSKDNLRKW------IGHPRFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNP 117
           G + NL +            F+ I+ D+            VD + H A   S      +P
Sbjct: 63  GHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDP 122

Query: 118 VKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY 176
           + +  TN+ G LNML  A+          ++S  YGD    P+ E   G   P+   S Y
Sbjct: 123 ITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIG--KPL---SPY 177

Query: 177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIRGEPLTV 234
              K V E     + R +G      R FN +G R + +     V+  + +  I+G+ + +
Sbjct: 178 AVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYI 237

Query: 235 QAPGTQTRSFCYVSDMV 251
              G  +R FCY+ + V
Sbjct: 238 NGDGETSRDFCYIENTV 254

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369

 Score =  193 bits (491), Expect = 5e-60
 Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 42/220 (19%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M I++TG  GF+G +L   L     + +  V       ++ L   +              
Sbjct: 1   MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTK--EEELESALL------------- 45

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
               + D I HLA    P     +  +    NV    ++L +  R   +  +  +S +  
Sbjct: 46  ----KADFIVHLAGVNRPE----HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQA 97

Query: 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN 212
                          NP      Y E K   E L+ +Y  ++G  + I R  N +G    
Sbjct: 98  TQD------------NP------YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCK 139

Query: 213 IDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC 252
            +   V++ F  +  R E + V        +  YV D+V 
Sbjct: 140 PNYNSVIATFCYKIARNEEIQVN-DRNVELTLNYVDDIVA 178

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333

 Score =  182 bits (465), Expect = 2e-56
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 32/229 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            ++ +TG  G IGSH+ + L+E   ++V+ +DN+ TG +++L+    HP    +   + +
Sbjct: 22  KKVFITGICGQIGSHIAELLLE-RGDKVVGIDNFATGRREHLK---DHPNLTFVEGSIAD 77

Query: 93  PLLIE-------VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RIL 143
             L+         D + H A     P     +      TN +G  N++  AK+    R +
Sbjct: 78  HALVNQLIGDLQPDAVVHTAASYKDP----DDWYNDTLTNCVGGSNVVQAAKKNNVGRFV 133

Query: 144 LTSTSEVYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
              T+  YG  P+  P    +    NP    S Y   K   E     Y    G++    R
Sbjct: 134 YFQTALCYGVKPIQQPVRLDH--PRNPA--NSSYAISKSANED----YLEYSGLDFVTFR 185

Query: 203 IFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           + N  GPR        +  F  +   G+   V       R F +V D+ 
Sbjct: 186 LANVVGPRNVSG---PLPIFFQRLSEGKKCFV---TKARRDFVFVKDLA 228

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351

 Score =  180 bits (458), Expect = 3e-55
 Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 26/239 (10%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW------IGHPRF 83
            S    L+TG AGFIGS+L++KL++     VI +DN+ TG + NL +           RF
Sbjct: 23  FSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRF 81

Query: 84  ELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKY---NPVKTIKTNVIGTLNMLGLA 135
             I  D+ +    E     VD + H A   S         +P+ T  TN+ G LN+L  A
Sbjct: 82  CFIEGDIRDLTTCEQVMKGVDHVLHQAALGS---VPRSIVDPITTNATNITGFLNILHAA 138

Query: 136 KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 194
           K          ++S  YGD    P+ E   G  NP+   S Y   K V E     Y R +
Sbjct: 139 KNAQVQSFTYAASSSTYGDHPALPKVEENIG--NPL---SPYAVTKYVNEIYAQVYARTY 193

Query: 195 GIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           G +    R FN +G R + +     V+  + A  ++G+ + +   G  +R FCY+ +++
Sbjct: 194 GFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVI 252

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362

 Score =  180 bits (459), Expect = 3e-55
 Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 32/247 (12%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNL--------RKWIGHP 81
            N  IL+TGGAGF+GS+L     E + K +V+V+D + + +  +          K +   
Sbjct: 9   ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68

Query: 82  RFELIRHDVTEPLLIE------VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           + E+I  D+  PL +        D ++H  A   + +    N    +KTN    LN+L +
Sbjct: 69  KGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM---LNQELVMKTNYQAFLNLLEI 125

Query: 135 AKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 194
           A+   A+++  S++ VYG+    P       N +P    + Y   K   +  +  +   +
Sbjct: 126 ARSKKAKVIYASSAGVYGNTKA-PNVVGK--NESPE---NVYGFSKLCMDEFVLSHS--N 177

Query: 195 GIEIRIARIFNTYGPRMNIDDGR---VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
                  R FN YGPR      +   +V      A+  + + +   G Q R F Y+ D V
Sbjct: 178 DNVQVGLRYFNVYGPREF-YKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIED-V 235

Query: 252 CKSCFLA 258
            ++   A
Sbjct: 236 IQANVKA 242

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357

 Score =  170 bits (434), Expect = 1e-51
 Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 18/230 (7%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHD 89
               I+VTGGAGFIGS++V  L +    +++VVDN   G+K  NL     +    + + D
Sbjct: 45  EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKED 102

Query: 90  VTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 144
               ++       V+ I+H    +S   +    +  +  N   +  +L          L 
Sbjct: 103 FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLY 160

Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
            S++  YG       +        P+   + +   K + +  +     +   +I   R F
Sbjct: 161 ASSAATYGGRTSDFIESRE--YEKPL---NVFGYSKFLFDEYVRQILPEANSQIVGFRYF 215

Query: 205 NTYGPRMNIDD--GRVVSNFIAQAIRGE-PLTVQAPGTQTRSFCYVSDMV 251
           N YGPR         V  +   Q   GE P   +      R F YV D+ 
Sbjct: 216 NVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA 265

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310

 Score =  167 bits (426), Expect = 7e-51
 Identities = 54/227 (23%), Positives = 90/227 (39%), Gaps = 20/227 (8%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEP 93
           I+VTGGAGFIGS++V  L +    +++VVDN   G+K  NL     +    + + D    
Sbjct: 2   IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD--LNIADYMDKEDFLIQ 59

Query: 94  LLIE-----VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
           ++       V+ I+H  AC ++    +++    +  N   +  +L          L  S+
Sbjct: 60  IMAGEEFGDVEAIFHEGACSSTT---EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 116

Query: 148 SEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTY 207
           +  YG       +        P+   + Y   K + +  +     +   +I   R FN Y
Sbjct: 117 AATYGGRTSDFIESR--EYEKPL---NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 171

Query: 208 GPRMNIDD--GRVVSNFIAQAIRGE-PLTVQAPGTQTRSFCYVSDMV 251
           GPR         V  +   Q   GE P   +      R F YV D+ 
Sbjct: 172 GPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA 218

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score =  167 bits (426), Expect = 8e-51
 Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 26/228 (11%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTG +G IG+ LV  L E    + ++  +                  + I  DV+   
Sbjct: 2   ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD---------TGGIKFITLDVSNRD 52

Query: 95  LIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
            I+       +D I+HLA   S    K +P    K N+ GT N+L  AK+    ++++ S
Sbjct: 53  EIDRAVEKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111

Query: 147 TSEVYGDPL-VHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
           T  V+G     +           P   R+ +   K  AE L   Y+ + G+++R  R   
Sbjct: 112 TIGVFGPETPKNKVPSITI--TRP---RTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPG 166

Query: 206 TYGPRMNIDDG--RVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
               +     G           A++ E         +     Y+ D +
Sbjct: 167 IISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDAL 214

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311

 Score =  163 bits (416), Expect = 2e-49
 Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 35/239 (14%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MR+LVTGGAGFIGSH+V+ L+     EV V+DN  TG ++N+            R D+ +
Sbjct: 1   MRVLVTGGAGFIGSHIVEDLLA-RGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRD 54

Query: 93  PLLIE-------VDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA- 140
              +E          + H A       S      +PV   + N++G LN+L   ++ G  
Sbjct: 55  KEGVERAFREFRPTHVSHQAAQASVKVSVE----DPVLDFEVNLLGGLNLLEACRQYGVE 110

Query: 141 RILLTSTSE-VYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
           +++  ST   +YG+ P     +E++     P    S Y   K   E  +  Y + +G++ 
Sbjct: 111 KLVFASTGGAIYGEVPEGERAEETW--PPRPK---SPYAASKAAFEHYLSVYGQSYGLKW 165

Query: 199 RIARIFNTYGPRMNID-DGRVVSNFIAQAIRGEPLTV-----QAPGTQTRSFCYVSDMV 251
              R  N YGPR +   +  VV+ F  + ++G P+T+            R + YV D+ 
Sbjct: 166 VSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVA 224

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312

 Score =  162 bits (413), Expect = 6e-49
 Identities = 42/230 (18%), Positives = 74/230 (32%), Gaps = 21/230 (9%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           N +IL+ G  G IG+ L  KL +    E ++  +    + D +              +  
Sbjct: 2   NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNS------GPFEVVNAL 55

Query: 92  EPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARIL 143
           +   IE       +  IY +A   S    + NP      N+    ++L LAK     +I 
Sbjct: 56  DFNQIEHLVEVHKITDIYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF 114

Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
             S+  V+G                 +   + Y   K+  E     YH  +G+++R  R 
Sbjct: 115 WPSSIAVFGPTTPKENTP----QYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRY 170

Query: 204 FNTYGPRMNIDDGR--VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
                       G      +   +AI  +               Y+ D +
Sbjct: 171 PGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAI 220

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score =  158 bits (402), Expect = 5e-47
 Identities = 44/243 (18%), Positives = 85/243 (34%), Gaps = 31/243 (12%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLME------NEKNEVIVVDNYFTGSKDNLRKWIGHPR 82
           +   M I + G AG +G  L  +L++          +  ++D +   +            
Sbjct: 11  YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF-----SGA 65

Query: 83  FELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
            +    D++ P   E       D I+HLA   S      +  K  + N+ GT  +    +
Sbjct: 66  VDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAEL-DFDKGYRINLDGTRYLFDAIR 124

Query: 137 RVGA------RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY 190
                     R++ TS+  V+G PL +P  + +     P+   + Y   K + E L+ DY
Sbjct: 125 IANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFH--TTPL---TSYGTQKAICELLLSDY 179

Query: 191 HRQHGIEIRIARIFNTYGPRMNIDDGR--VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS 248
            R+   +    R+          +       SN + + + G+   +  P +         
Sbjct: 180 SRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPR 239

Query: 249 DMV 251
             V
Sbjct: 240 SAV 242

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267

 Score =  154 bits (392), Expect = 3e-46
 Identities = 51/236 (21%), Positives = 82/236 (34%), Gaps = 42/236 (17%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           R+LVTG AG +GS +   L     +EV + D    G+ +           E++  D+ + 
Sbjct: 4   RLLVTGAAGGVGSAIRPHLGT-LAHEVRLSDIVDLGAAEAH--------EEIVACDLADA 54

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPV-KTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
             +       D I HL   +        P    ++ N+IG  N+   A+ +G  RI+  S
Sbjct: 55  QAVHDLVKDCDGIIHLGGVSVE-----RPWNDILQANIIGAYNLYEAARNLGKPRIVFAS 109

Query: 147 TSEVYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
           ++   G  P     D        P    S Y   K   E L   Y+ +  IE    RI +
Sbjct: 110 SNHTIGYYPRTTRIDTEV--PRRPD---SLYGLSKCFGEDLASLYYHKFDIETLNIRIGS 164

Query: 206 TYGPRMN---------IDDGRVVSNFIAQAIRGEPL---TVQAPGTQTRSFCYVSD 249
            +    +         +DD       + +A     L    V      T S+     
Sbjct: 165 CFPKPKDARMMATWLSVDDFM---RLMKRAFVAPKLGCTVVYGASANTESWWDNDK 217

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330

 Score =  154 bits (391), Expect = 2e-45
 Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 38/233 (16%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           S+MRIL+TGGAG +GS+L++  +  + +E++V+DN+ TG ++ L          +I   V
Sbjct: 19  SHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDNFATGKREVLPP---VAGLSVIEGSV 74

Query: 91  TEPLLIE-------VDQIYHLA----CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           T+  L+E          + H A     P                NV G++N+   A + G
Sbjct: 75  TDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAAT-------NVQGSINVAKAASKAG 127

Query: 140 A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
             R+L   T+  YG P   P          P    + Y   K   E     +     + +
Sbjct: 128 VKRLLNFQTALCYGRPATVPIPIDS-----PTAPFTSYGISKTAGE----AFLMMSDVPV 178

Query: 199 RIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
              R+ N  GPR+ I  G  +  F  +   G+           R F  +SD +
Sbjct: 179 VSLRLANVTGPRLAI--G-PIPTFYKRLKAGQKCFC---SDTVRDFLDMSDFL 225

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404

 Score =  142 bits (360), Expect = 3e-40
 Identities = 59/278 (21%), Positives = 87/278 (31%), Gaps = 60/278 (21%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---------------- 73
               R++V GG G+ G      L +    EV +VDN      D+                
Sbjct: 9   HHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDR 67

Query: 74  LRKW--IGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASP-----IFYKYNPVK 119
           + +W  +     EL   D+ +   +         D + H            +  +   V 
Sbjct: 68  ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFG--EQRSAPYSMIDRSRAVY 125

Query: 120 TIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLVHPQDESY---------WGNVN 168
           T   NVIGTLN+L   K       ++   T   YG P +   +E Y              
Sbjct: 126 TQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEGYITITHNGRTDTLPY 184

Query: 169 PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRM---------------NI 213
           P    S Y   K      +    +  GI          YG +                + 
Sbjct: 185 PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDA 244

Query: 214 DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
             G  ++ F  QA  G PLTV   G QTR +  + D V
Sbjct: 245 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV 282

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score =  137 bits (347), Expect = 1e-39
 Identities = 43/231 (18%), Positives = 76/231 (32%), Gaps = 36/231 (15%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +  R+LVTG AG +G  + ++L      E++ + +               P  E ++ D+
Sbjct: 2   AMKRLLVTGAAGQLGRVMRERLA--PMAEILRLADLSPLDPA-------GPNEECVQCDL 52

Query: 91  TEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
            +      ++   D I HL   +          + ++ N+IG  N+   A+  G  RI+ 
Sbjct: 53  ADANAVNAMVAGCDGIVHLGGISVE----KPFEQILQGNIIGLYNLYEAARAHGQPRIVF 108

Query: 145 TSTSEVYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
            S++   G  P              P      Y   K   E L   Y  + G E  + RI
Sbjct: 109 ASSNHTIGYYPQTERLGPDV-----PARPDGLYGVSKCFGENLARMYFDKFGQETALVRI 163

Query: 204 FNTYGPRMNI----------DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF 244
            +      N           D   ++       + G P  V         +
Sbjct: 164 GSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCP-VVWGASANDAGW 213

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347

 Score =  127 bits (322), Expect = 4e-35
 Identities = 68/253 (26%), Positives = 102/253 (40%), Gaps = 42/253 (16%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSKDNLRKWIGHPRFELIRHDVT 91
            ++L+TGG GF+GS+L    +     ++IV DN    G+ DNL        FE +  D+ 
Sbjct: 2   AKLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIR 60

Query: 92  EPLLIE-------VDQIYHLACPA------SPIFYKYNPVKTIKTNVIGTLNMLGLAKR- 137
               +         D  +HLA         S I    NP    + NV GTLN+L   ++ 
Sbjct: 61  NKNDVTRLITKYMPDSCFHLA--GQVAMTTS-I---DNPCMDFEINVGGTLNLLEAVRQY 114

Query: 138 -VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG------------KRVAE 184
                I+ +ST++VYGD L   +          +   + YDE             K  A+
Sbjct: 115 NSNCNIIYSSTNKVYGD-LEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAAD 173

Query: 185 TLMFDYHRQHGIEIRIARIFNTYGPR-MNIDDGRVVSNFIAQAIR-----GEPLTVQAPG 238
             M DY R  G+   + R  + YG R     D   V  F  +A+       +P T+   G
Sbjct: 174 QYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNG 233

Query: 239 TQTRSFCYVSDMV 251
            Q R   +  DM+
Sbjct: 234 KQVRDVLHAEDMI 246

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score =  118 bits (298), Expect = 9e-32
 Identities = 33/236 (13%), Positives = 77/236 (32%), Gaps = 24/236 (10%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           ++++  V G  G +G H    +     ++++++  +   S+    + + +   E    ++
Sbjct: 12  AHVKYAVLGATGLLGHHAARAIRA-AGHDLVLI--HRPSSQ---IQRLAYLEPECRVAEM 65

Query: 91  TEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
            +   +E     +D +   A             + + + +  T        +    RIL 
Sbjct: 66  LDHAGLERALRGLDGVIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILY 123

Query: 145 TSTSEVYG-DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
             ++      P   P  E  + +  P G +S Y   K   +    +  R +G+ + I   
Sbjct: 124 VGSAYAMPRHPQGLPGHEGLFYDSLPSG-KSSYVLCKWALDEQAREQAR-NGLPVVIGIP 181

Query: 204 FNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLAY 259
               G     D G      I     GE   +       R+    ++   +   +A 
Sbjct: 182 GMVLGEL---DIGPTTGRVITAIGNGE---MTHYVAGQRNVIDAAE-AGRGLLMAL 230

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337

 Score =  113 bits (286), Expect = 4e-30
 Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 41/240 (17%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-----EVIVVDN--YFTGSKDNLRKWIGHPRFEL 85
           MR+LVTGGAGFIGSH V +L+          EVIV+D+  Y  G++ NL      PR   
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY-AGNRANLAPVDADPRLRF 59

Query: 86  IRHDVT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLN 130
           +  D+         L  VD I H A            +  +F         +TNV GT  
Sbjct: 60  VHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGAS--VF--------TETNVQGTQT 109

Query: 131 MLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD 189
           +L  A   G  R++  ST++VYG       D   W   +P+   S Y   K  ++ +   
Sbjct: 110 LLQCAVDAGVGRVVHVSTNQVYGS-----IDSGSWTESSPLEPNSPYAASKAGSDLVARA 164

Query: 190 YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
           YHR +G+++RI R  N YGP  + +  +++  F+   + G  L +   G   R + +  D
Sbjct: 165 YHRTYGLDVRITRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD 222

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336

 Score =  107 bits (271), Expect = 7e-28
 Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 56/248 (22%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRFELIR 87
            +M++LVTGG GFIGS+ +  ++E   + EVI +D   Y   +  NL+     PR+  ++
Sbjct: 2   HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGY-GSNPANLKDLEDDPRYTFVK 60

Query: 88  HDVT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNML 132
            DV      + L+ +VD + HLA           P   IF        + +NVIGT  +L
Sbjct: 61  GDVADYELVKELVRKVDGVVHLAAESHVDRSISSPE--IF--------LHSNVIGTYTLL 110

Query: 133 GLAKR--VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY 190
              +R     R +  ST EVYGD +     +  +   + +   S Y   K  ++ L+  +
Sbjct: 111 ESIRRENPEVRFVHVSTDEVYGD-I----LKGSFTENDRLMPSSPYSATKAASDMLVLGW 165

Query: 191 HRQHGIEIRIARIFNTYG---------PRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT 241
            R + +   I R  N YG         P+            I +A  G  + +   G   
Sbjct: 166 TRTYNLNASITRCTNNYGPYQFPEKLIPKT-----------IIRASLGLKIPIYGTGKNV 214

Query: 242 RSFCYVSD 249
           R + YV D
Sbjct: 215 RDWLYVED 222

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348

 Score =  104 bits (262), Expect = 2e-26
 Identities = 68/251 (27%), Positives = 95/251 (37%), Gaps = 57/251 (22%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRFELIRHD 89
             I+VTGGAGFIGS+ V  +  N  +  V V+D   Y  G+K NL   I   R EL+  D
Sbjct: 5   KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTY-AGNKANLEA-ILGDRVELVVGD 62

Query: 90  VT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           +      + L  + D I H A           P+   F        I TN IGT  +L  
Sbjct: 63  IADAELVDKLAAKADAIVHYAAESHNDNSLNDPS--PF--------IHTNFIGTYTLLEA 112

Query: 135 AKRVGARILLTSTSEVYGD-PLVHPQDESYWGNV------NPIGVRSCYDEGKRVAETLM 187
           A++   R    ST EVYGD PL         G              S Y   K  ++ ++
Sbjct: 113 ARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIV 172

Query: 188 FDYHRQHGIEIRIARIFNTYG---------PRMNIDDGRVVSNFIAQAIRGEPLTVQAPG 238
             + R  G++  I+   N YG         PR            I   + G    +   G
Sbjct: 173 KAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQ-----------ITNILAGIKPKLYGEG 221

Query: 239 TQTRSFCYVSD 249
              R + + +D
Sbjct: 222 KNVRDWIHTND 232

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346

 Score =  102 bits (258), Expect = 6e-26
 Identities = 66/248 (26%), Positives = 112/248 (45%), Gaps = 46/248 (18%)

Query: 27  KFFQSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRF 83
            F  + M ILVTGGAGFIGS+ V  ++++ +  ++I  D   Y +G+ +N++    HP +
Sbjct: 19  YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTY-SGNLNNVKSIQDHPNY 77

Query: 84  ELIRHDVTEPLLIE-------VDQIYHLACPA------SPIFYKYNPVKTIKTNVIGTLN 130
             ++ ++    L+E       V  I + A  A      S I    NP+    TNVIGT+ 
Sbjct: 78  YFVKGEIQNGELLEHVIKERDVQVIVNFA--AESHVDRS-I---ENPIPFYDTNVIGTVT 131

Query: 131 MLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD 189
           +L L K+    +++  ST EVYG  L        +    P+   S Y   K  A+ +   
Sbjct: 132 LLELVKKYPHIKLVQVSTDEVYGS-L---GKTGRFTEETPLAPNSPYSSSKASADMIALA 187

Query: 190 YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNF--------IAQAIRGEPLTVQAPGTQT 241
           Y++ + + + + R  N YGP            +        +  A+ G+ L +   G   
Sbjct: 188 YYKTYQLPVIVTRCSNNYGPY----------QYPEKLIPLMVTNALEGKKLPLYGDGLNV 237

Query: 242 RSFCYVSD 249
           R + +V+D
Sbjct: 238 RDWLHVTD 245

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361

 Score =  100 bits (251), Expect = 6e-25
 Identities = 69/261 (26%), Positives = 105/261 (40%), Gaps = 67/261 (25%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN--YFTGSKDNLRKWIGHPRFELIRHDV 90
           M+IL+TGGAGFIGS +V  +++N ++ V+ +D   Y  G+ ++L       R+     D+
Sbjct: 1   MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTY-AGNLESLSDISESNRYNFEHADI 59

Query: 91  TEPLLIE-------VDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNML- 132
            +   I         D + HLA           PA   F        I+TN++GT  +L 
Sbjct: 60  CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPA--AF--------IETNIVGTYALLE 109

Query: 133 ---------GLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVN------PIGVRSCYD 177
                    G  K+   R    ST EVYGD L HP +      +            S Y 
Sbjct: 110 VARKYWSALGEDKKNNFRFHHISTDEVYGD-LPHPDEVENSVTLPLFTETTAYAPSSPYS 168

Query: 178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR---------MNIDDGRVVSNFIAQAIR 228
             K  ++ L+  + R +G+   +    N YGP          +           I  A+ 
Sbjct: 169 ASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLV-----------ILNALE 217

Query: 229 GEPLTVQAPGTQTRSFCYVSD 249
           G+PL +   G Q R + YV D
Sbjct: 218 GKPLPIYGKGDQIRDWLYVED 238

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330

 Score = 96.7 bits (242), Expect = 1e-23
 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 31/187 (16%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
             IL+ GGAG+IGSH V KL++ E   V+VVDN  TG +D +         +    D+  
Sbjct: 2   NSILICGGAGYIGSHAVKKLVD-EGLSVVVVDNLQTGHEDAI-----TEGAKFYNGDLRD 55

Query: 92  EPLLIEV------DQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG 139
           +  L +V      + + H A                 P++    NV G L +L +     
Sbjct: 56  KAFLRDVFTQENIEAVMHFAA------DSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK 109

Query: 140 A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
             + + +ST+  YG+  V    E            + Y E K   E ++  Y +   +  
Sbjct: 110 VDKFIFSSTAATYGEVDVDLITEET-----MTNPTNTYGETKLAIEKMLHWYSQASNLRY 164

Query: 199 RIARIFN 205
           +I R FN
Sbjct: 165 KIFRYFN 171

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397

 Score = 90.8 bits (226), Expect = 3e-21
 Identities = 45/213 (21%), Positives = 81/213 (38%), Gaps = 47/213 (22%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           S+MR+LV GGAG+IGSH V  L+ +  + V++VD+       +            ++   
Sbjct: 1   SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60

Query: 91  TEPL--------LIEVDQIYHLACPA--SPIFYKYNPVKTI------------------- 121
                       L   D    +      + +F ++ P+  +                   
Sbjct: 61  GPKPPWADRYAALEVGD----VRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKY 116

Query: 122 -KTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVH-------PQDESYWGNVNPIGV 172
              NV+G L +L         +I+ +S++ ++G+P +        P D +          
Sbjct: 117 YDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINA-----KKSP 171

Query: 173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFN 205
            S Y E K +AE ++ D    +GI+    R FN
Sbjct: 172 ESPYGESKLIAERMIRDCAEAYGIKGICLRYFN 204

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341

 Score = 83.3 bits (207), Expect = 7e-19
 Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 33/194 (17%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRH 88
           +   ILVTGGAG+IGSH   +L+ +   +V++ DN     ++ +   + I          
Sbjct: 4   TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIARIEKITGKTPAFHET 62

Query: 89  DVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           DV++   +        +    H A         A PI Y  N       N+   L++L +
Sbjct: 63  DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRN-------NLDSLLSLLRV 115

Query: 135 AKRVGARILLTSTS-EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
            +    + ++ S+S  VYG P   P DE++     P+   + Y + K +AE ++ D    
Sbjct: 116 MRERAVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTKLMAEQILRDVEAA 170

Query: 194 HGIEIRIA--RIFN 205
                R+A  R FN
Sbjct: 171 DP-SWRVATLRYFN 183

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 36/198 (18%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRH 88
           ++  +LVTGGAG+IGSH V +L+EN   + +V DN    + D++   + +          
Sbjct: 10  TSKIVLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEV 68

Query: 89  DVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           D+ +   +E       +D + H A           P+ Y Y        N++GT+ +L L
Sbjct: 69  DLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRY-Y------HNNILGTVVLLEL 121

Query: 135 AKRVGARILLTSTSE-VYGDPLVHPQ----DESYWGNVNPIGVRSCYDEGKRVAETLMFD 189
            ++      + S+S  VYGD    P      E       P+G  + Y   K   E ++ D
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC-----PLGPTNPYGHTKYAIENILND 176

Query: 190 YHRQHGIEIRIA--RIFN 205
            +       + A  R FN
Sbjct: 177 LYNSDKKSWKFAILRYFN 194

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338

 Score = 79.8 bits (198), Expect = 1e-17
 Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 34/193 (17%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDV 90
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L   + +G      +  D+
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDI 59

Query: 91  TEPLLIE-------VDQIYHLAC-------PASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
               L+        +D + H A           P+ Y  N       NV GTL ++   +
Sbjct: 60  RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLISAMR 112

Query: 137 RVGARILLTSTSE-VYGDPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQH 194
               +  + S+S  VYGD    P  ES+     P G  +S Y + K + E ++ D  +  
Sbjct: 113 AANVKNFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKLMVEQILTDLQKAQ 167

Query: 195 GIEIRIA--RIFN 205
             +  IA  R FN
Sbjct: 168 P-DWSIALLRYFN 179

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score = 73.2 bits (180), Expect = 9e-16
 Identities = 32/237 (13%), Positives = 73/237 (30%), Gaps = 40/237 (16%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   +I++ G +GF+GS L+++ +     EV  V        + ++    +   ++ + D
Sbjct: 2   EKVKKIVLIGASGFVGSALLNEALN-RGFEVTAV----VRHPEKIKI--ENEHLKVKKAD 54

Query: 90  VTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RIL 143
           V+       +    D +     P        N        +   L ++   K+ G  R L
Sbjct: 55  VSSLDEVCEVCKGADAVISAFNPGW------NNPDIYDETIKVYLTIIDGVKKAGVNRFL 108

Query: 144 LTST-SEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
           +      ++  P +   D             +     K + E  +    ++  I+     
Sbjct: 109 MVGGAGSLFIAPGLRLMDSGEV-------PENILPGVKALGEFYLNFLMKEKEIDWVFFS 161

Query: 203 IFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLAY 259
                 P  ++  G     +    +  + + V   G    S   V D    +     
Sbjct: 162 ------PAADMRPGVRTGRYR---LGKDDMIVDIVG---NSHISVED-YAAAMIDEL 205

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 40/190 (21%), Positives = 68/190 (35%), Gaps = 35/190 (18%)

Query: 34  RILVTGGAGFIGSHLVDKLME-----------NEKNEVIVVDNYFTGSKDNLRKWIGHP- 81
           R+ VTGG GF+GS ++  L+E           + + +  V           L    G   
Sbjct: 3   RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV---------SFLTNLPGASE 53

Query: 82  RFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
           +      D++ P      +     I+H A P              K  V G L +L    
Sbjct: 54  KLHFFNADLSNPDSFAAAIEGCVGIFHTASP-IDFAVSEPEEIVTKRTVDGALGILKACV 112

Query: 137 RVGA--RILLTST--SEVYGDPLVHPQDESYWGNVNPIGVR----SCYDEGKRVAETLMF 188
                 R + TS+  +  +        DES W +V+ +         Y   K +AE  + 
Sbjct: 113 NSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVL 172

Query: 189 DYHRQHGIEI 198
           ++  Q+GI++
Sbjct: 173 EFGEQNGIDV 182

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 73.4 bits (180), Expect = 4e-15
 Identities = 42/234 (17%), Positives = 75/234 (32%), Gaps = 58/234 (24%)

Query: 10  HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENE--KNEVI------ 61
             + + P P+P              +L+TG  GF+G +LV +L+        +I      
Sbjct: 61  ATAVNLPGPSPEL----------RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE 110

Query: 62  --------VVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEP-----------LLIEVDQ 100
                   +   + +G  + LR +  +   R E++  D +EP           L   VD 
Sbjct: 111 SDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDL 170

Query: 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYG------- 152
           I   A  A    + Y   +    NV GT  ++ +A           ST++V         
Sbjct: 171 IVDSA--AMVNAFPY--HELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAF 226

Query: 153 ---DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
                +               G    Y   K   E L+ + +    + + + R 
Sbjct: 227 TEDADIRVISPTRTVDGGWAGG----YGTSKWAGEVLLREANDLCALPVAVFRC 276

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338

 Score = 71.9 bits (177), Expect = 8e-15
 Identities = 38/190 (20%), Positives = 73/190 (38%), Gaps = 35/190 (18%)

Query: 34  RILVTGGAGFIGSHLVDKLME----------NEKNEVIVVDNYFTGSKDNLRKWIGHPRF 83
              V GG GF+ S LV  L++          +  N+  V          +L +       
Sbjct: 11  TACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKV---------SHLLELQELGDL 61

Query: 84  ELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
           ++ R D+T+       +   D ++H+A P      +      IK  + G +N++    R 
Sbjct: 62  KIFRADLTDELSFEAPIAGCDFVFHVATPV-HFASEDPENDMIKPAIQGVVNVMKACTRA 120

Query: 139 GA--RILLT-STSEVYGDPLVHPQ---DESYWGNVNPIGVRSC----YDEGKRVAETLMF 188
            +  R++LT S + V  + L       DE  W ++  +         Y   K +AE   +
Sbjct: 121 KSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAW 180

Query: 189 DYHRQHGIEI 198
            +  ++ I++
Sbjct: 181 KFAEENNIDL 190

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 46/269 (17%), Positives = 84/269 (31%), Gaps = 58/269 (21%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-------TGSKDNLRKWIGHP-- 81
               +LVTG  GF+ SH+V++L+E+          Y             NL+K       
Sbjct: 10  EGSLVLVTGANGFVASHVVEQLLEH---------GYKVRGTARSASKLANLQKRWDAKYP 60

Query: 82  -RFE-LIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
            RFE  +  D+ +      ++     + H+   AS + +     + +   + GTLN L  
Sbjct: 61  GRFETAVVEDMLKQGAYDEVIKGAAGVAHI---ASVVSFSNKYDEVVTPAIGGTLNALRA 117

Query: 135 AKRVGA--RILLT-STSEVYGDPLVHPQ---DESYWGNVNPIGVRSCYDEG--------- 179
           A    +  R +LT ST               DE  W   N   +                
Sbjct: 118 AAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSW---NLESIDKAKTLPESDPQKSLW 174

Query: 180 -----KRVAETLMFDYHRQHGIEIRIARIFN---TYGPRMNIDDGRVVSN-FIAQAIRGE 230
                K  AE   + +  ++     +  +     T G   + +     ++ ++     GE
Sbjct: 175 VYAASKTEAELAAWKFMDENKPHFTLNAV-LPNYTIGTIFDPETQSGSTSGWMMSLFNGE 233

Query: 231 PLTVQAPGTQTRSFCYVSDMVCKSCFLAY 259
                A     + +    D +        
Sbjct: 234 VSPALAL-MPPQYYVSAVD-IGLLHLGCL 260

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 70.1 bits (171), Expect = 4e-14
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 41/239 (17%)

Query: 36  LVTGGAGFIGSHLVDKL----MENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           L+ G  G IG+ L + L          +V  V      ++     W        ++ D++
Sbjct: 5   LIVGVTGIIGNSLAEILPLADTPGGPWKVYGV------ARRTRPAWHEDNPINYVQCDIS 58

Query: 92  EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RIL 143
           +P      L  +  + H+         +    +  + N     N+L            I 
Sbjct: 59  DPDDSQAKLSPLTDVTHVFYVTWAN--RSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116

Query: 144 LTSTSEVYGDPLVH---------PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 194
           L +  + Y  P            P  E              YD      + ++ +  ++ 
Sbjct: 117 LQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYM---NFYYDL----EDIMLEEVEKKE 169

Query: 195 GIEIRIARIFNTYGPR----MNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
           G+   + R  N +G      MN+     V   I     G+ L           +   SD
Sbjct: 170 GLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAI-CKHEGKVLRFTGCKAAWDGYSDCSD 227

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348

 Score = 69.8 bits (172), Expect = 4e-14
 Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 42/201 (20%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-----FTGSK----DNLRKWIGHPR 82
             ++LVTGGAG+IGSH V +L+E      +V+DN+       GS       +++  G   
Sbjct: 2   AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGR-S 59

Query: 83  FELIRHDVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGT 128
            E    D+ +   ++          + H A           P+ Y          N+ GT
Sbjct: 60  VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-------NLTGT 112

Query: 129 LNMLGLAKRVGARILLTSTSE-VYGDPLVHPQDESYWGNVNPIGVRSC-YDEGKRVAETL 186
           + +L + K  G + L+ S+S  VYG+P   P DE++     P G  +  Y + K   E +
Sbjct: 113 IQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-----PTGGCTNPYGKSKFFIEEM 167

Query: 187 MFDYHRQHGIEIRIA--RIFN 205
           + D  +           R FN
Sbjct: 168 IRDLCQADK-TWNAVLLRYFN 187

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321

 Score = 69.5 bits (171), Expect = 5e-14
 Identities = 58/197 (29%), Positives = 83/197 (42%), Gaps = 36/197 (18%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
             +MR L+TG AGF+G +L + L   E+N EV        G+          P  E+I  
Sbjct: 10  HGSMRALITGVAGFVGKYLANHLT--EQNVEVF-------GTS--RNNEAKLPNVEMISL 58

Query: 89  DVTEP-----LLIEV--DQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 137
           D+ +      ++ ++  D I+HLA       S  +   N   T  TNV GTL++L   + 
Sbjct: 59  DIMDSQRVKKVISDIKPDYIFHLAAKSSVKDS--W--LNKKGTFSTNVFGTLHVLDAVRD 114

Query: 138 VG--ARILLTSTSEVYGDPLVH--PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
                RIL   +SE YG  L    P  E      N +   S Y   K     L   Y + 
Sbjct: 115 SNLDCRILTIGSSEEYGMILPEESPVSEE-----NQLRPMSPYGVSKASVGMLARQYVKA 169

Query: 194 HGIEIRIARIFNTYGPR 210
           +G++I   R FN  GP 
Sbjct: 170 YGMDIIHTRTFNHIGPG 186

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 39/193 (20%), Positives = 74/193 (38%), Gaps = 36/193 (18%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLME----------NEKNEVIVVDNY-FTGSKDNLRKWIG 79
            +  + VTG +GFIGS LV +L+E          +  N   V        ++ +L     
Sbjct: 4   QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHL----- 58

Query: 80  HPRFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVK-TIKTNVIGTLNMLG 133
                L + D+ +       +     ++H+A P    F   +P    IK  + G L ++ 
Sbjct: 59  ----TLWKADLADEGSFDEAIKGCTGVFHVATPM--DFESKDPENEVIKPTIEGMLGIMK 112

Query: 134 LAKRVGA--RILLTST--SEVYGDPLVHPQDESYWGNVNPIGVRSC----YDEGKRVAET 185
                    R++ TS+  +    +  +   DES W ++     +      Y   K +AE 
Sbjct: 113 SCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQ 172

Query: 186 LMFDYHRQHGIEI 198
             + Y +++ I+ 
Sbjct: 173 AAWKYAKENNIDF 185

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357

 Score = 66.4 bits (162), Expect = 8e-13
 Identities = 49/248 (19%), Positives = 95/248 (38%), Gaps = 36/248 (14%)

Query: 25  FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-------DNYFTGSKDNLRKW 77
            + F+Q   R+ VTG  GF G  L   L +     V           + F  +   +   
Sbjct: 3   NNSFWQ-GKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAPTVPSLFETA--RVADG 58

Query: 78  IGHPRFELIRHDVTEPLLIEV--DQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNML 132
           +     ++   +     + E   + ++H+A  A P+    Y   PV+T  TNV+GT+ +L
Sbjct: 59  MQSEIGDIRDQNKLLESIREFQPEIVFHMA--AQPLVRLSYS-EPVETYSTNVMGTVYLL 115

Query: 133 GLAKRVG--ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY 190
              + VG    ++  ++ + Y     + +    +     +G    Y   K  AE +   Y
Sbjct: 116 EAIRHVGGVKAVVNITSDKCYD----NKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSY 171

Query: 191 ---------HRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT 241
                    + QHG  +   R  N  G   +    R+V + +    + +P+ ++ P    
Sbjct: 172 RNSFFNPANYGQHGTAVATVRAGNVIGGG-DWALDRIVPDILRAFEQSQPVIIRNP-HAI 229

Query: 242 RSFCYVSD 249
           R + +V +
Sbjct: 230 RPWQHVLE 237

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 49/223 (21%), Positives = 80/223 (35%), Gaps = 52/223 (23%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-----NLRKWIGHPRFEL 85
            N  IL+TGG G  G   V K+++    + I+V   +  S+D      +      PR   
Sbjct: 20  DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIV---Y--SRDELKQSEMAMEFNDPRMRF 74

Query: 86  IRHDV-----TEPLLIEVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
              DV         L  VD   H A     P +    +YNP++ IKTN++G  N++    
Sbjct: 75  FIGDVRDLERLNYALEGVDICIHAAALKHVPIA----EYNPLECIKTNIMGASNVINACL 130

Query: 137 RVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD---YHR 192
           +   ++++  ST     D   +P        +N  G        K  ++ L      +  
Sbjct: 131 KNAISQVIALST-----DKAANP--------INLYGA------TKLCSDKLFVSANNFKG 171

Query: 193 QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR-GEPLTV 234
               +  + R  N  G R     G VV  F          + +
Sbjct: 172 SSQTQFSVVRYGNVVGSR-----GSVVPFFKKLVQNKASEIPI 209

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
             MR+LV G  G +  +L+ +L   + +E +        +++   +       +++  ++
Sbjct: 20  QGMRVLVVGANGKVARYLLSELKN-KGHEPVA----MVRNEEQGPELRERGASDIVVANL 74

Query: 91  TEPL---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
            E        +D +   A  + P        KTI  ++ G +  +  A++ G  R ++ S
Sbjct: 75  EEDFSHAFASIDAVVFAAG-SGP---HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVS 130

Query: 147 T 147
           +
Sbjct: 131 S 131

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 50.7 bits (121), Expect = 8e-08
 Identities = 21/179 (11%), Positives = 54/179 (30%), Gaps = 20/179 (11%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M+I + G  G  GS ++++      +EV         +   +     H    +++ D+ +
Sbjct: 1   MKIGIIGATGRAGSRILEEAKN-RGHEVTA----IVRNAGKIT--QTHKDINILQKDIFD 53

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTSEV 150
             L ++     +                 + +V    +++ +     +   +++   + +
Sbjct: 54  LTLSDLSDQNVVVDAYGI------SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASL 107

Query: 151 YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP 209
             D   +   ES      P      Y   +  A+ L      Q             + P
Sbjct: 108 QIDEDGNTLLESKGLREAPY-----YPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEP 161

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 38/213 (17%), Positives = 63/213 (29%), Gaps = 38/213 (17%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            +IL+ G  G +G  L  +L   + +EV  +      S   +   +     ++ R D   
Sbjct: 4   SKILIAG-CGDLGLELARRLTA-QGHEVTGL----RRSAQPMPAGVQTLIADVTRPDTLA 57

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY 151
            ++    +I      AS    +Y+      + V G  N L   +      +   S++ VY
Sbjct: 58  SIVHLRPEILVYCVAAS----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVY 113

Query: 152 GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP-- 209
           G  +    DE                +    AE L+            I R    YGP  
Sbjct: 114 GQEVEEWLDEDTP--PIAKDFSG---KRMLEAEALL------AAYSSTILRFSGIYGPGR 162

Query: 210 ---------RMNIDDGRVVSNFI-----AQAIR 228
                              +N I     A  I 
Sbjct: 163 LRMIRQAQTPEQWPARNAWTNRIHRDDGAAFIA 195

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 39/279 (13%), Positives = 78/279 (27%), Gaps = 85/279 (30%)

Query: 27  KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----LRKWIGHPR 82
             F  + +IL+T         + D L       + +  +  T + D     L K++    
Sbjct: 260 NAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 83  FELIRHDV--TEPLLI----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
            +L   +V  T P  +    E  +       A+   +K+     + T +  +LN+L  A 
Sbjct: 316 QDL-PREVLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDKLTTIIESSLNVLEPA- 369

Query: 137 RVGARILLTSTSEVYGDPLVHPQD--------ESYWGNVNPIGVRSCYDE--GKRVAE-- 184
                       +++    V P             W +V    V    ++     + E  
Sbjct: 370 ---------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 185 ---------TLMFDYHRQ-------HGIEI---RIARIFNTYGPRMNIDDGRVVS----- 220
                    ++  +   +       H   +    I + F++        D    S     
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 221 --------------------NFIAQAIRGEPLTVQAPGT 239
                                F+ Q IR +     A G+
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 24  RFSKFFQSN-MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR 82
           R S  F  + + + +TG  G +G  L  +L     +EVI +       +    K    P 
Sbjct: 138 RTSTLFDGSPLTVAITGSRGLVGRALTAQLQT-GGHEVIQL----VRKEPKPGKRFWDPL 192

Query: 83  FELIRHDVTEPLLIEVDQIYHLA 105
                      LL   D + HLA
Sbjct: 193 NPASD------LLDGADVLVHLA 209

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 24/136 (17%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +   +LVTG +G  G  +  KL E     V         S     K       ++   D+
Sbjct: 3   NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG---LVRSAQGKEKI--GGEADVFIGDI 57

Query: 91  TEPLLIE-----VDQIYHLA-------------CPASPIFYKYNPVKTIKTNVIGTLNML 132
           T+   I      +D +  L                  P F   +     + + IG  N +
Sbjct: 58  TDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 117

Query: 133 GLAKRVG-ARILLTST 147
             AK  G   I++  +
Sbjct: 118 DAAKVAGVKHIVVVGS 133

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 43/225 (19%)

Query: 12  SASKPPPTPSPLRFSKFFQSNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS 70
           S+       S  R + +FQ +M  +L+ G  G I  H++++L + +  +  +    F   
Sbjct: 3   SSHHHHHHSSG-RENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTL----FARQ 57

Query: 71  KDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
              + K       ++I  DV         +   D +Y                 T +   
Sbjct: 58  PAKIHK-PYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL--------------TGEDLD 102

Query: 126 IGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE 184
           I   +++   K     R++   +  +Y +    P     W N           +  R A 
Sbjct: 103 IQANSVIAAMKACDVKRLIFVLSLGIYDEV---PGKFVEWNNAVIGE----PLKPFRRAA 155

Query: 185 TLMFDYHRQHGIE---IRIARIFN--TYGPRMNIDDGRVVSNFIA 224
               D     G+E   +R A + +       +   +       ++
Sbjct: 156 ----DAIEASGLEYTILRPAWLTDEDIIDYELTSRNEPFKGTIVS 196

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            I V G AG IG  +   L  +    V V D+        L   +        + D  +
Sbjct: 6  WNICVVG-AGKIGQMIAALLKTSSNYSVTVADH----DLAALAV-LNRMGVATKQVDAKD 59

Query: 93 P 93
           
Sbjct: 60 E 60

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224

 Score = 44.6 bits (105), Expect = 8e-06
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 13/131 (9%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVI-VVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           M+I V G  G  GS +V +      +EV+ VV +     K   R              +T
Sbjct: 1   MKIAVLGATGRAGSAIVAEARR-RGHEVLAVVRD---PQKAADRLGATVATLVKEPLVLT 56

Query: 92  EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV 150
           E  L  VD +             Y        ++    +++ L +      + +  ++ +
Sbjct: 57  EADLDSVDAVVDALSVPWGSGRGY-------LHLDFATHLVSLLRNSDTLAVFILGSASL 109

Query: 151 YGDPLVHPQDE 161
                 HP   
Sbjct: 110 AMPGADHPMIL 120

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 33/235 (14%), Positives = 62/235 (26%), Gaps = 55/235 (23%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
            I + G AG I   L   L+      + +             + I H R  +I      P
Sbjct: 7   YITILGAAGQIAQXLTATLLTYTDMHITLYGR--QLKTRIPPEIIDHERVTVIEGSFQNP 64

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148
             +E      + ++                     +     +++    R   R ++  + 
Sbjct: 65  GXLEQAVTNAEVVFV----------------GAMESGSDMASIVKALSRXNIRRVIGVSM 108

Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIE---IRIARIFN 205
                    P     W   N       Y +G+R A     +  R+  +    +R+  ++N
Sbjct: 109 AGLSGEF--PVALEKWTFDNLPIS---YVQGERQAR----NVLRESNLNYTILRLTWLYN 159

Query: 206 -------TYGPRMNIDDGRVVS-----NFIAQAIR--------GEPLTVQAPGTQ 240
                     P     +   VS       I   +            + V  PGT 
Sbjct: 160 DPEXTDYELIPEGAQFNDAQVSREAVVKAIFDILHAADETPFHRTSIGVGEPGTH 214

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Length = 467

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 31 SNM--RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
           +M   +L+  G+GF+   ++D L  N+   V V       +  N +        + I  
Sbjct: 20 RHMGKNVLL-LGSGFVAQPVIDTLAANDDINVTVACR----TLANAQALAKPSGSKAISL 74

Query: 89 DVTEP 93
          DVT+ 
Sbjct: 75 DVTDD 79

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 23/122 (18%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           M+I + G  G +G  L+  L   +                 + +   +   + +  DV  
Sbjct: 1   MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGA--------RKVEQVPQYNNVKAVHFDVDW 52

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145
                   L  +D I +++               +K ++ G + ++  A++    R +L 
Sbjct: 53  TPEEMAKQLHGMDAIINVSGSG--------GKSLLKVDLYGAVKLMQAAEKAEVKRFILL 104

Query: 146 ST 147
           ST
Sbjct: 105 ST 106

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 19/132 (14%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            +I + G  G  G   + + ++    EV V           L    G     ++  DV +
Sbjct: 4   KKIAIFGATGQTGLTTLAQAVQ-AGYEVTV----LVRDSSRLPS-EGPRPAHVVVGDVLQ 57

Query: 93  P-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
                  +   D +  L           N +        G  N++   K  G  +++  +
Sbjct: 58  AADVDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110

Query: 147 TSEVYGDPLVHP 158
           ++ +  DP   P
Sbjct: 111 SAFLLWDPTKVP 122

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 20 PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVV 63
                  F   N  + + G +G  G  L+ +++E    ++V ++
Sbjct: 6  ALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLI 50

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 58/210 (27%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           N R+LVTG  G +G  +  +  +N  + V           + +              ++ 
Sbjct: 2   NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQV--------------NLL 47

Query: 92  EPLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAK 136
           +   +           I H  C A                P    + NV  + N+   A 
Sbjct: 48  DSNAVHHIIHDFQPHVIVH--CAA------ERRPDVVENQPDAASQLNVDASGNLAKEAA 99

Query: 137 RVGARILLTSTSEVY---GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
            VGA ++  S+  V+     P    +D        P+ +   Y + K   E  + + +  
Sbjct: 100 AVGAFLIYISSDYVFDGTNPPYR-EEDI-----PAPLNL---YGKTKLDGEKAVLENNLG 150

Query: 194 HGIEIRIARIFNTYGPRMNIDDGRVVSNFI 223
             + +RI  ++                + +
Sbjct: 151 AAV-LRIPILYGEVEKLEE--------SAV 171

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 80  HPRFELIRHDVTEP-----LLIEV--DQIYHLAC----PASPIFYKYNPVKTIKTNVIGT 128
               +    D+ +       +I+    ++Y+LA      AS  +    PV T   + +G 
Sbjct: 62  EGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGAS--WN--QPVTTGVVDGLGV 117

Query: 129 LNMLGLAKRVG--ARILLTSTSEVYGDPLVHPQDES 162
            ++L   ++     R    STSE++G      QDE+
Sbjct: 118 THLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN 153

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
           +  R+L+ G  G  G HL+D+++      +VI             +    HPR +    
Sbjct: 3  STPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR---------KALAEHPRLDNPVG 53

Query: 89 DVTE 92
           + E
Sbjct: 54 PLAE 57

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 38/130 (29%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MR L+TG +G +G  L   L  +E++EVI V                   ++L   D+T+
Sbjct: 1   MRTLITGASGQLGIELSRLL--SERHEVIKVY----------NSSEIQGGYKL---DLTD 45

Query: 93  PLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAKR 137
              +E        D I + A  A                  K  K N     +++   K 
Sbjct: 46  FPRLEDFIIKKRPDVIINAA--A------MTDVDKCEIEKEKAYKINAEAVRHIVRAGKV 97

Query: 138 VGARILLTST 147
           + + I+  ST
Sbjct: 98  IDSYIVHIST 107

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
          M I++TG  G +G+H+ ++ + N  +   + 
Sbjct: 1  MNIMLTGATGHLGTHITNQAIANHIDHFHIG 31

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	100.0
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	100.0
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	100.0
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	100.0
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	100.0
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	100.0
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	100.0
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	100.0
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	100.0
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	100.0
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	100.0
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	100.0
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	100.0
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	100.0
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	100.0
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	100.0
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	100.0
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	100.0
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	100.0
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	100.0
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	100.0
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	100.0
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	100.0
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	100.0
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	100.0
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	100.0
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	100.0
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	100.0
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	100.0
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	100.0
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	100.0
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	100.0
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	100.0
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	100.0
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	100.0
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	100.0
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	100.0
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	100.0
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	100.0
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	100.0
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	100.0
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	100.0
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	100.0
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	100.0
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	100.0
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	100.0
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	100.0
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	100.0
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.98
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.98
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.98
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.97
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.97
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.97
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.97
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.97
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.97
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.97
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.97
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.97
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.97
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.97
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.97
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.97
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.97
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.97
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.96
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.96
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.96
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.96
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.96
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.95
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.95
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.95
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.95
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.94
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.94
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.94
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.94
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.94
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.94
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.93
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.93
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.93
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.93
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.93
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.93
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.93
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.93
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.93
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.93
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.93
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.93
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.93
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.93
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.93
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.92
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.92
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.92
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.92
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.92
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.92
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.92
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.92
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.92
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.92
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.92
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.92
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.92
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.92
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.92
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.92
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.92
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.92
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.92
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.92
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.92
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.92
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.92
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.92
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.92
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.92
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.92
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.92
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.92
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.92
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.92
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.92
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.92
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.92
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.92
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.92
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.92
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.92
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.92
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.92
1spx_A	278	Short-chain reductase family member (5L265); paral	99.92
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.92
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.92
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.92
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.91
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.91
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.91
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.91
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.91
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.91
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.91
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.91
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.91
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.91
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.91
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.91
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.91
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.91
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.91
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.91
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.91
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.91
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.91
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.91
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.91
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.91
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.91
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.91
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.91
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.91
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.91
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.91
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.91
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.91
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.91
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.91
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.91
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.91
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.91
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.91
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.91
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.91
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.91
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.91
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.91
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.91
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.91
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.91
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.91
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.91
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.91
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.91
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.91
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.91
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.91
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.91
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.91
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.91
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	99.91
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.91
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.91
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.91
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.91
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.91
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.91
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.9
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.9
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.9
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.9
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.9
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.9
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.9
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.9
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.9
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.9
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.9
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.9
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.9
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.9
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.9
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.9
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.9
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.9
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.9
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.9
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.9
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.9
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.9
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.9
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.9
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.9
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.9
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.9
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.9
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.9
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	99.9
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.9
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.9
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.9
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.9
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.9
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.9
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.9
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.9
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.9
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.9
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.9
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.9
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.9
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.9
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.9
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.89
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.89
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.89
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.89
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.89
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.89
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.89
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.89
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.89
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.89
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.89
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.89
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.89
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.89
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.89
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.89
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.89
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.89
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.89
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.89
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.89
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.88
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.88
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.88
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.88
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.88
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.88
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.88
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.88
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.88
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.88
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.88
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.88
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.88
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.88
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.87
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.87
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.87
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.86
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.86
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.85
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.85
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.85
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.84
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.84
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.84
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.83
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.81
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.79
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.79
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.77
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.77
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.76
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.76
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.75
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.74
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.72
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.66
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.64
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.63
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.62
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.6
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.57
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.55
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.55
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.52
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.33
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.29
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	99.1
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.06
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.94
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.91
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.87
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	98.8
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	98.74
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.58
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.55
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.51
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.51
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.51
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	98.5
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.43
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.39
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	98.39
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.34
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.29
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.26
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.23
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	98.21
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	98.15
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.15
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.13
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.11
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.1
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	98.1
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.1
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.07
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	98.04
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.0
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.99
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.96
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.96
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.95
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.92
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.9
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.89
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	97.88
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.87
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.85
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.84
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.84
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.84
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.8
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.8
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.8
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.79
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.79
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.78
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.74
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.68
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.68
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.67
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.66
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.65
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.65
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	97.61
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.6
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.6
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	97.57
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.56
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.55
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.54
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.48
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.48
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	97.47
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.45
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.43
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.41
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.41
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.4
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.39
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.37
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.36
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.35
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.35
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	97.35
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.32
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.3
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.3
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.3
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	97.29
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.28
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.28
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.26
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.26
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.24
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.21
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	97.21
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.16
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	97.16
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.14
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.14
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.12
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.11
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	97.11
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	97.11
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	97.08
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	97.08
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.07
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.05
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	97.03
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	97.01
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.99
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.98
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.96
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.95
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.95
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.94
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.91
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.9
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.87
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.86
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.86
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.84
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.8
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.8
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.8
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.78
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.78
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.77
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.76
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.71
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.69
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.68
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.63
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.6
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.6
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.59
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.56
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.54
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.52
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	96.51
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.48
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	96.41
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.4
1lnq_A	336	MTHK channels, potassium channel related protein;	96.38
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	96.37
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.36
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	96.35
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.34
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.34
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.25
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.24
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.24
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.2
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.18
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	96.17
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.15
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.14
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.13
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.12
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.11
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.1
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.08
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.06
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.05
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.04
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.98
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.96
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.96
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	95.92
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.91
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.91
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.89
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	95.87
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	95.86
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.85
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.84
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.84
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	95.84
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.83
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	95.83
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.81
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.8
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.79
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.78
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.78
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.74
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.72
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.69
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	95.67
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.67

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=100.00  E-value=1.2e-38  Score=265.55  Aligned_cols=223  Identities=30%  Similarity=0.437  Sum_probs=193.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC------CceeEeecccCccc-----cCCc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH------PRFELIRHDVTEPL-----LIEV   98 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~dl~~~~-----~~~~   98 (259)
                      +++|+|||||||||||++|+++|+++|++ |++++|+.......+......      .+++++.+|+.+.+     +.++
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQV-VIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            56799999999999999999999999998 999999766544433332211      58999999999887     6789


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchH
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYD  177 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~  177 (259)
                      |+|||+||.........++...+++|+.++.+++++|++.++ +|||+||..+|+.....+++|++     +..|.+.|+
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-----~~~p~~~Y~  176 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEEN-----IGNPLSPYA  176 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTC-----CCCCCSHHH
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCC-----CCCCCChhH
Confidence            999999997654445567888999999999999999999998 99999999999988888888887     778889999


Q ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHH
Q 025022          178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSC  255 (259)
Q Consensus       178 ~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  255 (259)
                      .+|.++|.+++.++++.+++++++||+++|||+..+..  ..++..++..+..+.++.++++++..++|+|++|+|++++
T Consensus       177 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~  256 (351)
T 3ruf_A          177 VTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNI  256 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHH
Confidence            99999999999999888999999999999999865432  2478889999999999999999999999999999999998


Q ss_pred             hhh
Q 025022          256 FLA  258 (259)
Q Consensus       256 ~~l  258 (259)
                      .++
T Consensus       257 ~~~  259 (351)
T 3ruf_A          257 LSA  259 (351)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=100.00  E-value=2.4e-38  Score=263.19  Aligned_cols=228  Identities=26%  Similarity=0.423  Sum_probs=181.9

Q ss_pred             CcccccccCCCEEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCC-CCCcchhhhccCCCceeEeecccCccc-----
Q 025022           23 LRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPL-----   94 (259)
Q Consensus        23 ~~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~dl~~~~-----   94 (259)
                      +...+..+++|+|||||||||||++|+++|+++|  +. |++++|.. ......+.......+++++.+|+++.+     
T Consensus        15 ~~n~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~-v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~   93 (346)
T 4egb_A           15 TENLYFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYK-IINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHV   93 (346)
T ss_dssp             ---------CEEEEEETTTSHHHHHHHHHHHHHCTTEE-EEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHH
T ss_pred             ccccccccCCCeEEEECCccHHHHHHHHHHHhhCCCcE-EEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHH
Confidence            3334445678999999999999999999999999  54 77777754 233334444444468999999999987     


Q ss_pred             cC--CcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCC-CCCCCCCCCcCCCCCC
Q 025022           95 LI--EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPI  170 (259)
Q Consensus        95 ~~--~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~-~~~~~~e~~~~~~~~~  170 (259)
                      +.  ++|+|||+||.........++...+++|+.++.+++++|++.++ +|||+||..+|+.. ...+++|++     +.
T Consensus        94 ~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~~-----~~  168 (346)
T 4egb_A           94 IKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEET-----PL  168 (346)
T ss_dssp             HHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTTS-----CC
T ss_pred             HhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCCC-----CC
Confidence            33  49999999998765445567888999999999999999999998 89999999999976 356778876     77


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDM  250 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  250 (259)
                      .|.+.|+.+|.++|.+++.++++++++++++||+++|||+..+  ..++..++..+..+.++.+++++...++|+|++|+
T Consensus       169 ~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv  246 (346)
T 4egb_A          169 APNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYP--EKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDH  246 (346)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT--TSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHH
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCc--cchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHH
Confidence            8889999999999999999998889999999999999998643  24788899999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 025022          251 VCKSCFLA  258 (259)
Q Consensus       251 a~~~~~~l  258 (259)
                      |++++.++
T Consensus       247 a~a~~~~~  254 (346)
T 4egb_A          247 CSAIDVVL  254 (346)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=100.00  E-value=1.1e-37  Score=258.94  Aligned_cols=229  Identities=69%  Similarity=1.147  Sum_probs=192.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      .+++|+|+|||||||||++|+++|+++|++ |++++|........+.......+++++.+|+.+..+.++|+|||+||..
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~~  102 (343)
T 2b69_A           24 EKDRKRILITGGAGFVGSHLTDKLMMDGHE-VTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPA  102 (343)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCC
T ss_pred             ccCCCEEEEEcCccHHHHHHHHHHHHCCCE-EEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECcccc
Confidence            356789999999999999999999999998 9999986544333333333345789999999998888999999999976


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHH
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF  188 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~  188 (259)
                      .......++...+++|+.++.+++++|++.+++|||+||..+|+.....+.+|+.|....+..+.+.|+.+|.++|.+++
T Consensus       103 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~  182 (343)
T 2b69_A          103 SPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCY  182 (343)
T ss_dssp             SHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             CchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHHHHHHHHH
Confidence            54334556788899999999999999999888999999999999877778888877665577778899999999999999


Q ss_pred             HHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          189 DYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       189 ~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .++++.+++++++||+++|||+..+.....+..++..+..+.++.+++++...++|+|++|+|++++.++
T Consensus       183 ~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~  252 (343)
T 2b69_A          183 AYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALM  252 (343)
T ss_dssp             HHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHH
T ss_pred             HHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHH
Confidence            9988889999999999999998654444577888888888888888888889999999999999998765

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=100.00  E-value=3e-36  Score=247.04  Aligned_cols=211  Identities=36%  Similarity=0.552  Sum_probs=178.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----cCCcCEEEEccCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----LIEVDQIYHLACPA  108 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----~~~~d~vi~~a~~~  108 (259)
                      |+|||||||||||++|+++|+++|++ |++++|.........     ..+++++.+|+.+.+    +.+ |+|||+|+..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~~~   73 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYE-VVVVDNLSSGRREFV-----NPSAELHVRDLKDYSWGAGIKG-DVVFHFAANP   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCCSSCCGGGS-----CTTSEEECCCTTSTTTTTTCCC-SEEEECCSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCE-EEEEeCCCCCchhhc-----CCCceEEECccccHHHHhhcCC-CEEEECCCCC
Confidence            68999999999999999999999998 999998765443222     357889999999876    334 9999999976


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHH
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLM  187 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~  187 (259)
                      .......++...+++|+.++.+++++|++.++ +|||+||..+|+.....+.+|+.     +..|.+.|+.+|.+.|.++
T Consensus        74 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~-----~~~p~~~Y~~sK~~~e~~~  148 (312)
T 3ko8_A           74 EVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEE-----PYKPISVYGAAKAAGEVMC  148 (312)
T ss_dssp             SSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTS-----CCCCCSHHHHHHHHHHHHH
T ss_pred             CchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCCC-----CCCCCChHHHHHHHHHHHH
Confidence            65566778889999999999999999999998 99999999999988778888876     7788899999999999999


Q ss_pred             HHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcC-CCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          188 FDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRG-EPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       188 ~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +.++.+.+++++++||+++|||+...   ..+..++.....+ ..+.+++++...++|+|++|+|++++.++
T Consensus       149 ~~~~~~~g~~~~~lrp~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~  217 (312)
T 3ko8_A          149 ATYARLFGVRCLAVRYANVVGPRLRH---GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAW  217 (312)
T ss_dssp             HHHHHHHCCEEEEEEECEEECTTCCS---SHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEeeccccCcCCCC---ChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHH
Confidence            99999899999999999999998542   4677777777666 56677888889999999999999998875

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=100.00  E-value=1.6e-36  Score=248.69  Aligned_cols=206  Identities=26%  Similarity=0.373  Sum_probs=179.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~  106 (259)
                      +|+|+|||||||||++|+++|+++|++ |++++|+ ..... +      .+++++.+|+. .+     +.++|+|||+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~-~~~~~-~------~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNT-PIILTRS-IGNKA-I------NDYEYRVSDYT-LEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-CC------------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCE-EEEEeCC-CCccc-C------CceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence            579999999999999999999999998 9999997 22221 2      27889999999 65     779999999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      .....    ++...+++|+.++.+++++|++.++ +|||+||..+|+.....+++|++     +..|.+.|+.+|.++|+
T Consensus        72 ~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~-----~~~p~~~Y~~sK~~~E~  142 (311)
T 3m2p_A           72 TRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKE-----LPLPDLMYGVSKLACEH  142 (311)
T ss_dssp             CCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTS-----CCCCSSHHHHHHHHHHH
T ss_pred             cCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCC-----CCCCCchhHHHHHHHHH
Confidence            76532    6777889999999999999999998 89999999999987778888887     77888999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +++.++.+.+++++++||+++|||+..+.  .++..++..+..+.++.++++++..++|+|++|+|++++.++
T Consensus       143 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~  213 (311)
T 3m2p_A          143 IGNIYSRKKGLCIKNLRFAHLYGFNEKNN--YMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYAL  213 (311)
T ss_dssp             HHHHHHHHSCCEEEEEEECEEECSCC--C--CHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCEEEEeeCceeCcCCCCC--CHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHH
Confidence            99999988899999999999999986532  488889999999999999888899999999999999998875

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=100.00  E-value=4.2e-37  Score=258.10  Aligned_cols=226  Identities=27%  Similarity=0.433  Sum_probs=186.4

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccC-ccc-----cCCcC
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EPL-----LIEVD   99 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~-~~~-----~~~~d   99 (259)
                      +..|++|+|+|||||||||++|+++|+++ |++ |++++|+.......    ....+++++.+|++ +.+     +.++|
T Consensus        19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~~~----~~~~~v~~~~~Dl~~d~~~~~~~~~~~d   93 (372)
T 3slg_A           19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWE-VFGMDMQTDRLGDL----VKHERMHFFEGDITINKEWVEYHVKKCD   93 (372)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHHSSCE-EEEEESCCTTTGGG----GGSTTEEEEECCTTTCHHHHHHHHHHCS
T ss_pred             CcccCCCEEEEECCCChHHHHHHHHHHhCCCCE-EEEEeCChhhhhhh----ccCCCeEEEeCccCCCHHHHHHHhccCC
Confidence            34467899999999999999999999999 888 99999875443322    22358999999999 665     56899


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCC-CCCC-CCCCchH
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNPI-GVRSCYD  177 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~-~~~~-~~~~~Y~  177 (259)
                      +|||+|+.........++...+++|+.++.+++++|++.+.+|||+||..+|+.....+++|+++.. ..+. .|.+.|+
T Consensus        94 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~  173 (372)
T 3slg_A           94 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYA  173 (372)
T ss_dssp             EEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHH
T ss_pred             EEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHH
Confidence            9999999876544556788899999999999999999988899999999999987777777775321 1111 5667899


Q ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC------CCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHH
Q 025022          178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI------DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV  251 (259)
Q Consensus       178 ~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  251 (259)
                      .+|.++|++++.++.+ +++++++||+++|||+..+      ....++..++..+..+.++.++++++..++|+|++|+|
T Consensus       174 ~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva  252 (372)
T 3slg_A          174 CSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGI  252 (372)
T ss_dssp             HHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHH
T ss_pred             HHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHH
Confidence            9999999999999887 9999999999999998653      12447888999999999999998889999999999999


Q ss_pred             HHHHhhh
Q 025022          252 CKSCFLA  258 (259)
Q Consensus       252 ~~~~~~l  258 (259)
                      ++++.++
T Consensus       253 ~a~~~~~  259 (372)
T 3slg_A          253 SALMKII  259 (372)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=100.00  E-value=8.7e-37  Score=251.07  Aligned_cols=215  Identities=33%  Similarity=0.500  Sum_probs=183.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC---CCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT---GSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      +++|+|+|||||||||++|+++|+++|++ |++++|+..   .....+.......+++++.+|+.     ++|+|||+|+
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----~~d~vi~~a~   78 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEE-VTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-----DVRLVYHLAS   78 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCC-EEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-----TEEEEEECCC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCE-EEEEecCCcccccchhhhhhhccCCCeeEEeCccc-----cCCEEEECCc
Confidence            45789999999999999999999999998 999999765   23333333333456777888877     7899999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      .........++...++ |+.++.+++++|++.++ +|||+||..+|+.....+++|+.     +..|.+.|+.+|.++|.
T Consensus        79 ~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~~-----~~~p~~~Y~~sK~~~E~  152 (321)
T 3vps_A           79 HKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDS-----PLSPRSPYAASKVGLEM  152 (321)
T ss_dssp             CCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTS-----CCCCCSHHHHHHHHHHH
T ss_pred             cCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCCC-----CCCCCChhHHHHHHHHH
Confidence            7765444566677778 99999999999999998 99999999999988777888886     77788999999999999


Q ss_pred             HHHHHHHHhCC-cEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGI-EIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~-~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +++.++.++++ +++++||+++|||+...  ..++..++..+..+.++.++++++..++|+|++|+|++++.++
T Consensus       153 ~~~~~~~~~~~~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~  224 (321)
T 3vps_A          153 VAGAHQRASVAPEVGIVRFFNVYGPGERP--DALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALA  224 (321)
T ss_dssp             HHHHHHHSSSSCEEEEEEECEEECTTCCT--TSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGG
T ss_pred             HHHHHHHHcCCCceEEEEeccccCcCCCC--CChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHH
Confidence            99999988899 99999999999998654  3478888888888888899999999999999999999998875

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=100.00  E-value=4.2e-36  Score=248.65  Aligned_cols=221  Identities=29%  Similarity=0.437  Sum_probs=179.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCCC-CCcchhhhccCCCceeEeecccCccc-----cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      |++|+||||||+||||++++++|+++|  ++ |++++|... ...+.+.......+++++.+|+++.+     +.++|+|
T Consensus         1 M~~m~vlVTGatG~iG~~l~~~L~~~g~~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   79 (336)
T 2hun_A            1 MHSMKLLVTGGMGFIGSNFIRYILEKHPDWE-VINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGV   79 (336)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHHCTTCE-EEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHHHHhCCCCE-EEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEE
Confidence            456899999999999999999999997  66 999988642 22233333222357899999999876     5689999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      ||+||.........+++..+++|+.++.+++++|.+.+.  +|||+||..+|+.....+++|+.     +..+.+.|+.+
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~-----~~~~~~~Y~~s  154 (336)
T 2hun_A           80 VHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTEND-----RLMPSSPYSAT  154 (336)
T ss_dssp             EECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTB-----CCCCCSHHHHH
T ss_pred             EECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCC-----CCCCCCccHHH
Confidence            999997653333456788999999999999999998874  99999999999976666777776     66778899999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |.++|.+++.++.+++++++++||+++|||+..+  ..++..++..+..+.++.+++++...++|+|++|+|++++.++
T Consensus       155 K~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~  231 (336)
T 2hun_A          155 KAASDMLVLGWTRTYNLNASITRCTNNYGPYQFP--EKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVL  231 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCT--TSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCc--CchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHH
Confidence            9999999999998889999999999999998543  2467778888888888888888888999999999999998764

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=100.00  E-value=4.5e-36  Score=246.20  Aligned_cols=212  Identities=34%  Similarity=0.530  Sum_probs=177.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----cCCcCEEEEccCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----LIEVDQIYHLACP  107 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----~~~~d~vi~~a~~  107 (259)
                      ||+|||||||||||++|+++|+++| . ++++.+.........     ..++.++.+|+.+..    +.++|+|||+|+.
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g-~-~v~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~   73 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN-E-IVVIDNLSSGNEEFV-----NEAARLVKADLAADDIKDYLKGAEEVWHIAAN   73 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS-C-EEEECCCSSCCGGGS-----CTTEEEECCCTTTSCCHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC-C-EEEEEcCCCCChhhc-----CCCcEEEECcCChHHHHHHhcCCCEEEECCCC
Confidence            4789999999999999999999999 5 555555433322222     247889999999833    5789999999997


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL  186 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~  186 (259)
                      ........+++..+++|+.++.+++++|++.++ +|||+||..+|+.....+.+|+.     +..|.+.|+.+|.+.|.+
T Consensus        74 ~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~-----~~~~~~~Y~~sK~~~e~~  148 (313)
T 3ehe_A           74 PDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDY-----PTHPISLYGASKLACEAL  148 (313)
T ss_dssp             CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTTS-----CCCCCSHHHHHHHHHHHH
T ss_pred             CChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCCC-----CCCCCCHHHHHHHHHHHH
Confidence            655556678899999999999999999999998 99999999999987778888876     777889999999999999


Q ss_pred             HHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcC-CCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRG-EPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       187 ~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ++.++.+++++++++||+++|||+...   ..+..++.....+ .++.+++++...++|+|++|+|++++.++
T Consensus       149 ~~~~~~~~g~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~  218 (313)
T 3ehe_A          149 IESYCHTFDMQAWIYRFANVIGRRSTH---GVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGL  218 (313)
T ss_dssp             HHHHHHHTTCEEEEEECSCEESTTCCC---SHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEeeccccCcCCCc---ChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHh
Confidence            999999999999999999999998542   4777777777666 56778899999999999999999998875

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=100.00  E-value=2.1e-36  Score=252.13  Aligned_cols=224  Identities=28%  Similarity=0.393  Sum_probs=186.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cC---CCceeEeecccCccc-----cCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IG---HPRFELIRHDVTEPL-----LIE   97 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~---~~~~~~~~~dl~~~~-----~~~   97 (259)
                      .+++|+|+|||||||||++|+++|+++|++ |++++|+.....+.+...   +.   ..+++++.+|+++.+     +.+
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~  102 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQK-VVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAG  102 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTT
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcC
Confidence            356789999999999999999999999998 999998654332222211   10   147889999999876     568


Q ss_pred             cCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCch
Q 025022           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY  176 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y  176 (259)
                      +|+|||+||.........+++..+++|+.++.+++++|++.++ +|||+||..+|+.....+.+|++     +..|.+.|
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~-----~~~~~~~Y  177 (352)
T 1sb8_A          103 VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDT-----IGKPLSPY  177 (352)
T ss_dssp             CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTC-----CCCCCSHH
T ss_pred             CCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCC-----CCCCCChh
Confidence            9999999997643333456788999999999999999999988 99999999999987667788876     66778899


Q ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHH
Q 025022          177 DEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKS  254 (259)
Q Consensus       177 ~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~  254 (259)
                      +.+|.++|.+++.++.+.+++++++||+++|||+..+.  ...++..++..+..+.++.++++++..++|+|++|+|+++
T Consensus       178 ~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~  257 (352)
T 1sb8_A          178 AVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQAN  257 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHH
Confidence            99999999999999888899999999999999986543  1246777888888888888888888999999999999998


Q ss_pred             Hhhh
Q 025022          255 CFLA  258 (259)
Q Consensus       255 ~~~l  258 (259)
                      +.++
T Consensus       258 ~~~~  261 (352)
T 1sb8_A          258 LLAA  261 (352)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=100.00  E-value=2e-35  Score=244.74  Aligned_cols=218  Identities=31%  Similarity=0.479  Sum_probs=182.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc---C---CCeEEEEcCCCCC-CcchhhhccCCCceeEeecccCccc-----cCCcCE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN---E---KNEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQ  100 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~---g---~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~  100 (259)
                      |+|+|||||||||++|+++|+++   |   ++ |++++|.... ....+.......+++++.+|+++.+     +.++|+
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   79 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADE-VIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDA   79 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSE-EEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceE-EEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCE
Confidence            68999999999999999999996   7   77 9999886432 2233333222357899999999876     678999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHH
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      |||+||.........+++..+++|+.++.+++++|.+.++ +|||+||..+|+.....+++|+.     +..+.+.|+.+
T Consensus        80 Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-----~~~~~~~Y~~s  154 (337)
T 1r6d_A           80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESS-----PLEPNSPYAAS  154 (337)
T ss_dssp             EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTS-----CCCCCSHHHHH
T ss_pred             EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCCC-----CCCCCCchHHH
Confidence            9999997653333456788999999999999999999988 99999999999876566777765     66778899999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |.++|.+++.++.+++++++++||+++|||+..+  ..++..++..+..+.++.++++++..++|+|++|+|++++.++
T Consensus       155 K~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~  231 (337)
T 1r6d_A          155 KAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP--EKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVL  231 (337)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT--TSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCC--CChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHH
Confidence            9999999999988889999999999999998543  3467778888888888888888889999999999999998764

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=100.00  E-value=1.2e-35  Score=247.01  Aligned_cols=218  Identities=28%  Similarity=0.379  Sum_probs=180.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhc--CCCeEEEEcCCCCC-CcchhhhccCCCceeEeecccCccc-----cCCcCEEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~  103 (259)
                      +|+|+||||+||||++++++|+++  |++ |++++|.... ....+... ...+++++.+|+++.+     +.++|+|||
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   81 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVH-VTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVH   81 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCE-EEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCE-EEEEeCCCCCCChhHHhhh-ccCCeEEEECCCCCHHHHHHHhhcCCEEEE
Confidence            579999999999999999999999  787 9999886432 22222222 2357899999999876     678899999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCC------------CCCCCCCcCCCCCCC
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLV------------HPQDESYWGNVNPIG  171 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~------------~~~~e~~~~~~~~~~  171 (259)
                      +||.........+++..+++|+.++.+++++|.+.+++|||+||..+|+....            .+++|+.     +..
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~-----~~~  156 (348)
T 1oc2_A           82 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAET-----NYN  156 (348)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTS-----CCC
T ss_pred             CCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeCCCcccccccccccccCCCcCCCC-----CCC
Confidence            99976533334567889999999999999999998889999999999986432            4566654     667


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHH
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV  251 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  251 (259)
                      +.+.|+.+|.++|.+++.++.+++++++++||+++|||+..+  ..++..++..+..+.++.+++++...++|+|++|+|
T Consensus       157 ~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva  234 (348)
T 1oc2_A          157 PSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI--EKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHS  234 (348)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCT--TSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCc--cchHHHHHHHHHcCCCceEecCCCceEeeEEHHHHH
Confidence            788999999999999999988889999999999999998642  246777888888888888888888999999999999


Q ss_pred             HHHHhhh
Q 025022          252 CKSCFLA  258 (259)
Q Consensus       252 ~~~~~~l  258 (259)
                      ++++.++
T Consensus       235 ~~~~~~~  241 (348)
T 1oc2_A          235 TGVWAIL  241 (348)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998764

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=100.00  E-value=9.9e-36  Score=248.93  Aligned_cols=218  Identities=25%  Similarity=0.374  Sum_probs=182.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHh--cCCCeEEEEcCCCCCC------c---chhhhccCCCceeEeecccCccc---
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLME--NEKNEVIVVDNYFTGS------K---DNLRKWIGHPRFELIRHDVTEPL---   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~--~g~~~V~~~~r~~~~~------~---~~~~~~~~~~~~~~~~~dl~~~~---   94 (259)
                      ++++|+||||||+||||++|+++|++  .|++ |++++|+....      .   .... .....++.++.+|+++.+   
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~   84 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKAK-VVVLDKFRSNTLFSNNRPSSLGHFK-NLIGFKGEVIAADINNPLDLR   84 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSE-EEEEECCCCC-------CCCCCCGG-GGTTCCSEEEECCTTCHHHHH
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCe-EEEEECCCccccccccchhhhhhhh-hccccCceEEECCCCCHHHHH
Confidence            36689999999999999999999999  8998 99999865411      0   1111 112346789999999976   


Q ss_pred             ---cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                         ..++|+|||+||...  ....+++..+++|+.++.+++++|++.+++|||+||..+|+.... +.+|++     +..
T Consensus        85 ~~~~~~~D~vih~A~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~~~~-~~~E~~-----~~~  156 (362)
T 3sxp_A           85 RLEKLHFDYLFHQAAVSD--TTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTKA-PNVVGK-----NES  156 (362)
T ss_dssp             HHTTSCCSEEEECCCCCG--GGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCSCCS-SBCTTS-----CCC
T ss_pred             HhhccCCCEEEECCccCC--ccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCCCCC-CCCCCC-----CCC
Confidence               468999999999654  356778899999999999999999999889999999999997665 788876     778


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHH
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD  249 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  249 (259)
                      |.+.|+.+|.++|.+++.++.+  ++++++||+++|||+..+..  ..++..++..+..+.++.+++++...++|+|++|
T Consensus       157 p~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D  234 (362)
T 3sxp_A          157 PENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIED  234 (362)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHH
T ss_pred             CCChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHH
Confidence            8899999999999999888765  89999999999999865432  2578888889999998888888889999999999


Q ss_pred             HHHHHHhhh
Q 025022          250 MVCKSCFLA  258 (259)
Q Consensus       250 ~a~~~~~~l  258 (259)
                      +|+++++++
T Consensus       235 va~ai~~~~  243 (362)
T 3sxp_A          235 VIQANVKAM  243 (362)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999998875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=100.00  E-value=5.2e-36  Score=249.19  Aligned_cols=213  Identities=26%  Similarity=0.318  Sum_probs=178.2

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEE
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      ....++|+|||||||||||++|++.|+++|++ |++++|+...           .++.++.+|+.+.+     +.++|+|
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRT-VRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVSAV   81 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCC-EEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCSEE
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCE-EEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCCEE
Confidence            33456789999999999999999999999999 9999986543           36789999999877     6799999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecC--CCCCCCCCCCcCCCCCCCCCCchHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD--PLVHPQDESYWGNVNPIGVRSCYDE  178 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~--~~~~~~~e~~~~~~~~~~~~~~Y~~  178 (259)
                      ||+|+....  .....+..+++|+.++.+++++|++.++ +|||+||..+|+.  ....+++|+.     +..|.+.|+.
T Consensus        82 ih~A~~~~~--~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~-----~~~~~~~Y~~  154 (347)
T 4id9_A           82 LHLGAFMSW--APADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDH-----PLCPNSPYGL  154 (347)
T ss_dssp             EECCCCCCS--SGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTS-----CCCCCSHHHH
T ss_pred             EECCcccCc--chhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCC-----CCCCCChHHH
Confidence            999997653  2333478999999999999999999998 9999999999997  4566778876     7788899999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEecccc-------------CCCCCCC---------CccHHHHHHHHHHcCCCeEEec
Q 025022          179 GKRVAETLMFDYHRQHGIEIRIARIFNTY-------------GPRMNID---------DGRVVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       179 sK~~~e~~~~~~~~~~~~~~~~lr~~~v~-------------g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  236 (259)
                      +|.++|++++.++++.+++++++||+++|             ||+....         ...++..++.....+.++.+++
T Consensus       155 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  234 (347)
T 4id9_A          155 TKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILA  234 (347)
T ss_dssp             HHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeC
Confidence            99999999999999899999999999999             7763321         1347777888888888888888


Q ss_pred             CCceeeee----eeHHHHHHHHHhhh
Q 025022          237 PGTQTRSF----CYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~----i~v~D~a~~~~~~l  258 (259)
                      ++...++|    +|++|+|++++.++
T Consensus       235 ~~~~~~~~~~~~i~v~Dva~ai~~~~  260 (347)
T 4id9_A          235 RNENGRPFRMHITDTRDMVAGILLAL  260 (347)
T ss_dssp             ECTTCCBCEECEEEHHHHHHHHHHHH
T ss_pred             CCCcccCCccCcEeHHHHHHHHHHHh
Confidence            88888999    99999999998875

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=100.00  E-value=3.2e-35  Score=240.93  Aligned_cols=215  Identities=31%  Similarity=0.516  Sum_probs=177.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~~a  105 (259)
                      |+|+||||+||||++++++|+++|++ |++++|........+.     .++.++.+|+++.+     +.  ++|+|||+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a   74 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGLE-VAVLDNLATGKRENVP-----KGVPFFRVDLRDKEGVERAFREFRPTHVSHQA   74 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCE-EEEECCCSSCCGGGSC-----TTCCEECCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECCCcCchhhcc-----cCeEEEECCCCCHHHHHHHHHhcCCCEEEECc
Confidence            68999999999999999999999998 9999885433222111     36788999999876     33  799999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecc-eeecC-CCCCCCCCCCcCCCCCCCCCCchHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS-EVYGD-PLVHPQDESYWGNVNPIGVRSCYDEGKRV  182 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~-~~~~~-~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~  182 (259)
                      +.........++...+++|+.++.+++++|++.++ +||++||. .+|+. ....+.+|+.     +..|.+.|+.+|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~-----~~~~~~~Y~~sK~~  149 (311)
T 2p5y_A           75 AQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETW-----PPRPKSPYAASKAA  149 (311)
T ss_dssp             SCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTS-----CCCCCSHHHHHHHH
T ss_pred             cccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCC-----CCCCCChHHHHHHH
Confidence            97653334456788999999999999999999888 99999999 88986 4455677765     66677899999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCCeEEe-----cCCceeeeeeeHHHHHHHHHh
Q 025022          183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGEPLTVQ-----APGTQTRSFCYVSDMVCKSCF  256 (259)
Q Consensus       183 ~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~v~D~a~~~~~  256 (259)
                      .|.+++.++++++++++++||+++|||+..... ..+++.++..+..+.++.++     +++...++|+|++|+|+++++
T Consensus       150 ~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~  229 (311)
T 2p5y_A          150 FEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHAL  229 (311)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHH
Confidence            999999998888999999999999999865432 34677788888888888887     888889999999999999987


Q ss_pred             hh
Q 025022          257 LA  258 (259)
Q Consensus       257 ~l  258 (259)
                      ++
T Consensus       230 ~~  231 (311)
T 2p5y_A          230 AL  231 (311)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=100.00  E-value=2.5e-35  Score=247.79  Aligned_cols=224  Identities=28%  Similarity=0.397  Sum_probs=175.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      .+++|+|+|||||||||++|+++|+++| ++ |++++|+.....+.+.   ...+++++.+|+.+.+     +.++|+||
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~~~l~---~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQ-VHVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSE-EEEECCCTTCCGGGSC---CCTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCce-EEEEECCCCCchhhcc---CCCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            3567899999999999999999999999 88 9999987554332222   1357899999999876     67899999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CC-eEEEEecceeecCCCCCCCC--CCCcCCCCCC-CCCCchH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDPLVHPQD--ESYWGNVNPI-GVRSCYD  177 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~~Ss~~~~~~~~~~~~~--e~~~~~~~~~-~~~~~Y~  177 (259)
                      |+||.........++...+++|+.++.+++++|++. ++ +|||+||..+|+.....+++  |+.|.  .+. .|.+.|+
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~~~~~~~Y~  182 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDI--VSLHNNDSPYS  182 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCC--CCSSCCCSHHH
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCccccccc--ccccCCCCchH
Confidence            999976543334567889999999999999999998 87 99999999999976665666  76532  133 5678899


Q ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC---------CCCC--ccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRM---------NIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       178 ~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      .+|.++|.+++.++.+.+++++++||+++|||+.         .+..  ..++..++..+..+.++.++++++..++|+|
T Consensus       183 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~  262 (377)
T 2q1s_A          183 MSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIF  262 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEE
Confidence            9999999999999888899999999999999986         2110  3477888888888888888888889999999


Q ss_pred             HHHHHHH-HHhhh
Q 025022          247 VSDMVCK-SCFLA  258 (259)
Q Consensus       247 v~D~a~~-~~~~l  258 (259)
                      ++|+|++ ++.++
T Consensus       263 v~Dva~a~i~~~~  275 (377)
T 2q1s_A          263 VEDVANGLIACAA  275 (377)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999 87764

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=100.00  E-value=6.8e-35  Score=241.88  Aligned_cols=222  Identities=24%  Similarity=0.354  Sum_probs=180.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc-----cC--CcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL-----LI--EVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~-----~~--~~d~v  101 (259)
                      .+|+|+||||+||||+++++.|+++|++ |++++|+........+...  ...++.++.+|+++.+     +.  ++|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   82 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYD-VVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA   82 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCc-EEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence            4679999999999999999999999998 9999987665443332221  1347889999999987     23  89999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      ||+||.........++...++.|+.++.+++++|++.++ +|||+||..+|+.....+++|+.     +..|.+.|+.+|
T Consensus        83 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~-----~~~~~~~Y~~sK  157 (341)
T 3enk_A           83 IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTK  157 (341)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTS-----CCBCSSHHHHHH
T ss_pred             EECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCC-----CCCCCChhHHHH
Confidence            999998654444566778899999999999999999988 99999999999987777888876     777889999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEeccccCCCCCC------C--CccHHHHHHHHHHc-CCCeEEec------CCceeeee
Q 025022          181 RVAETLMFDYHRQHG-IEIRIARIFNTYGPRMNI------D--DGRVVSNFIAQAIR-GEPLTVQA------PGTQTRSF  244 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~-~~~~~lr~~~v~g~~~~~------~--~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~  244 (259)
                      .++|.+++.++.+.+ ++++++||+++|||+...      .  ...+++.+...... ..++.++|      +++..++|
T Consensus       158 ~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~  237 (341)
T 3enk_A          158 LMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDY  237 (341)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECE
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEee
Confidence            999999999988876 999999999999996421      1  13355555544443 35667777      78899999


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      +|++|+|++++.++
T Consensus       238 i~v~Dva~a~~~~~  251 (341)
T 3enk_A          238 IHVVDLARGHIAAL  251 (341)
T ss_dssp             EEHHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHHH
Confidence            99999999998764

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=100.00  E-value=8.5e-35  Score=239.36  Aligned_cols=212  Identities=31%  Similarity=0.392  Sum_probs=175.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIY  102 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi  102 (259)
                      .++|+|||||||||||++|+++|+++|++ |++++|+... ..     +   ++.++.+|+++.+     +.  ++|+||
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~-~~-----l---~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   79 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVE-VFGTSRNNEA-KL-----P---NVEMISLDIMDSQRVKKVISDIKPDYIF   79 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCTTC-CC-----T---TEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCE-EEEEecCCcc-cc-----c---eeeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            35689999999999999999999999998 9999987543 11     1   6889999999876     33  489999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CC-eEEEEecceeecCC--CCCCCCCCCcCCCCCCCCCCchHH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDP--LVHPQDESYWGNVNPIGVRSCYDE  178 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~~Ss~~~~~~~--~~~~~~e~~~~~~~~~~~~~~Y~~  178 (259)
                      |+||.........+++..+++|+.++.+++++|++. ++ +|||+||..+|+..  ...+++|++     +..+.+.|+.
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~-----~~~~~~~Y~~  154 (321)
T 2pk3_A           80 HLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEEN-----QLRPMSPYGV  154 (321)
T ss_dssp             ECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTS-----CCBCCSHHHH
T ss_pred             EcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCC-----CCCCCCccHH
Confidence            999976544445678889999999999999999876 46 99999999999875  566778876     6677889999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHc---C--CCeEEecCCceeeeeeeHHHHHHH
Q 025022          179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR---G--EPLTVQAPGTQTRSFCYVSDMVCK  253 (259)
Q Consensus       179 sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~i~v~D~a~~  253 (259)
                      +|.++|.+++.++.+++++++++||+++|||+...  ..++..++..+..   +  .++..++++...++|+|++|+|++
T Consensus       155 sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a  232 (321)
T 2pk3_A          155 SKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSL--GFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQA  232 (321)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCT--TSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCC--CchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHH
Confidence            99999999999988889999999999999998653  2356666666655   6  567778888889999999999999


Q ss_pred             HHhhh
Q 025022          254 SCFLA  258 (259)
Q Consensus       254 ~~~~l  258 (259)
                      ++.++
T Consensus       233 ~~~~~  237 (321)
T 2pk3_A          233 YWLLS  237 (321)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98775

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=100.00  E-value=1.5e-34  Score=239.32  Aligned_cols=223  Identities=22%  Similarity=0.233  Sum_probs=178.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc-chhhhccCCCceeEeecccCccc-----cC--CcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~v  101 (259)
                      ..+|+|||||||||||++++++|+++|++ |++++|+..... ..+.......+++++.+|+++.+     +.  ++|+|
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V   90 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYR-VHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEV   90 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEE
Confidence            45789999999999999999999999998 999998754422 22222212347889999999876     23  57999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      ||+||.........++...+++|+.++.+++++|++.++  +|||+||..+|+.....+++|+.     +..|.+.|+.+
T Consensus        91 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~-----~~~p~~~Y~~s  165 (335)
T 1rpn_A           91 YNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENT-----PFYPRSPYGVA  165 (335)
T ss_dssp             EECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTS-----CCCCCSHHHHH
T ss_pred             EECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCccc-----CCCCCChhHHH
Confidence            999997654334567888999999999999999999873  99999999999987666778876     67778899999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCC-eEEecCCceeeeeeeHHHHHHHHHhh
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGEP-LTVQAPGTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~~~~~~  257 (259)
                      |.++|.+++.++.+++++++++||+++|||+..... ...+..++..+..+.. ...+++++..++|+|++|+|++++.+
T Consensus       166 K~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~  245 (335)
T 1rpn_A          166 KLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLM  245 (335)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHH
Confidence            999999999999888999999999999999854321 1235566666666653 34568888999999999999999876


Q ss_pred             h
Q 025022          258 A  258 (259)
Q Consensus       258 l  258 (259)
                      +
T Consensus       246 ~  246 (335)
T 1rpn_A          246 L  246 (335)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=100.00  E-value=1e-34  Score=239.82  Aligned_cols=216  Identities=25%  Similarity=0.392  Sum_probs=175.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEEEc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHL  104 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~~  104 (259)
                      ||+|+||||+||||++++++|+++|++ |++++|......+.+    . .+++++.+|+.+.+     +.  ++|+|||+
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~   74 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGLS-VVVVDNLQTGHEDAI----T-EGAKFYNGDLRDKAFLRDVFTQENIEAVMHF   74 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCGGGS----C-TTSEEEECCTTCHHHHHHHHHHSCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCE-EEEEeCCCcCchhhc----C-CCcEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence            479999999999999999999999998 999988654433222    1 26889999999876     34  89999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA  183 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~  183 (259)
                      ||.........+++..+++|+.++.+++++|++.++ +|||+||..+|+.....+++|++     +..|.+.|+.+|.++
T Consensus        75 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~-----~~~~~~~Y~~sK~~~  149 (330)
T 2c20_A           75 AADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEET-----MTNPTNTYGETKLAI  149 (330)
T ss_dssp             CCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTS-----CCCCSSHHHHHHHHH
T ss_pred             CcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCC-----CCCCCChHHHHHHHH
Confidence            997653333456788999999999999999999988 99999999999977667788876     667788999999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEeccccCCCCCC-------CCccHHHHHHHHHHc-CCCeEEec------CCceeeeeeeHHH
Q 025022          184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNI-------DDGRVVSNFIAQAIR-GEPLTVQA------PGTQTRSFCYVSD  249 (259)
Q Consensus       184 e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~i~v~D  249 (259)
                      |.+++.++.+++++++++||+++|||+...       ....+++.+...... +..+.+++      +++..++|+|++|
T Consensus       150 e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~D  229 (330)
T 2c20_A          150 EKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVED  229 (330)
T ss_dssp             HHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHH
T ss_pred             HHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHH
Confidence            999999988889999999999999996321       113366666655543 34567766      6778999999999


Q ss_pred             HHHHHHhhh
Q 025022          250 MVCKSCFLA  258 (259)
Q Consensus       250 ~a~~~~~~l  258 (259)
                      +|++++.++
T Consensus       230 va~a~~~~~  238 (330)
T 2c20_A          230 LVAAHFLGL  238 (330)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=100.00  E-value=1.4e-34  Score=240.22  Aligned_cols=221  Identities=26%  Similarity=0.462  Sum_probs=179.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      |+|+|||||||||++++++|+++ |++ |++++|+.....    ......+++++.+|+++..      +.++|+|||+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A   75 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYE-VYGLDIGSDAIS----RFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV   75 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCE-EEEEESCCGGGG----GGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCE-EEEEeCCcchHH----HhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence            68999999999999999999998 888 999998643322    2223357899999999742      45799999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCC-CC-CCCCCchHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNV-NP-IGVRSCYDEGKRVA  183 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~-~~-~~~~~~Y~~sK~~~  183 (259)
                      |.........++...+++|+.++.+++++|++.+.+|||+||..+|+.....+++|+.+... .+ ..|.+.|+.+|.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~  155 (345)
T 2bll_A           76 AIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLL  155 (345)
T ss_dssp             CCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHH
T ss_pred             cccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHHHHHH
Confidence            97654333456778899999999999999998878999999999999876667777764311 11 13556899999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEeccccCCCCCCC------CccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhh
Q 025022          184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNID------DGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       184 e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~  257 (259)
                      |.+++.++++.+++++++||+++|||+....      ....+..++..+..+.++.++++++..++|+|++|+|++++.+
T Consensus       156 e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~  235 (345)
T 2bll_A          156 DRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRI  235 (345)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHH
Confidence            9999999888899999999999999986431      1346778888888898888888888899999999999999876


Q ss_pred             h
Q 025022          258 A  258 (259)
Q Consensus       258 l  258 (259)
                      +
T Consensus       236 ~  236 (345)
T 2bll_A          236 I  236 (345)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=240.96  Aligned_cols=212  Identities=25%  Similarity=0.328  Sum_probs=173.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQI  101 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~v  101 (259)
                      .|++|+|||||||||||++|+++|+++|+       +.   ..       ....++.+.+|+++.+     +.  ++|+|
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-------~~---~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~~d~V   65 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGAG-------LP---GE-------DWVFVSSKDADLTDTAQTRALFEKVQPTHV   65 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTTC-------CT---TC-------EEEECCTTTCCTTSHHHHHHHHHHSCCSEE
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcCC-------cc---cc-------cccccCceecccCCHHHHHHHHhhcCCCEE
Confidence            46789999999999999999999999997       10   00       0124556688998876     33  49999


Q ss_pred             EEccCCCCc-cccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC-chHH
Q 025022          102 YHLACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS-CYDE  178 (259)
Q Consensus       102 i~~a~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~-~Y~~  178 (259)
                      ||+|+.... .....++...+++|+.++.+++++|++.++ +|||+||..+|+.....+++|+++... +..|.+ .|+.
T Consensus        66 ih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~-~~~p~~~~Y~~  144 (319)
T 4b8w_A           66 IHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNG-PPHNSNFGYSY  144 (319)
T ss_dssp             EECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBS-CCCSSSHHHHH
T ss_pred             EECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccC-CCCCCcchHHH
Confidence            999997542 234567788999999999999999999998 999999999999888888888764322 334444 6999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC--CccHHHHHHHH----HHcCCCeEEecCCceeeeeeeHHHHHH
Q 025022          179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQ----AIRGEPLTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       179 sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      +|.++|++++.++++++++++++||+++|||+..+.  ...+++.++..    +..+.++.++++++..++|+|++|+|+
T Consensus       145 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~  224 (319)
T 4b8w_A          145 AKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQ  224 (319)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHH
Confidence            999999999999998999999999999999986542  23466666666    788899999999999999999999999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      +++.++
T Consensus       225 a~~~~~  230 (319)
T 4b8w_A          225 LFIWVL  230 (319)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998775

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=100.00  E-value=1.3e-34  Score=241.76  Aligned_cols=222  Identities=20%  Similarity=0.231  Sum_probs=179.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQI  101 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~v  101 (259)
                      .+++|+|+||||+||||++|+++|+++|++ |++++|+...............++.++.+|+.+.+     +.  ++|+|
T Consensus         6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   84 (357)
T 1rkx_A            6 FWQGKRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIV   84 (357)
T ss_dssp             HHTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             hhCCCEEEEECCCchHHHHHHHHHHhCCCe-EEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEE
Confidence            356799999999999999999999999998 99999876544332222111347889999999876     33  48999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCCC-CCCCCCCcCCCCCCCCCCchHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGVRSCYDE  178 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~~-~~~~e~~~~~~~~~~~~~~Y~~  178 (259)
                      ||+||.........++...+++|+.++.+++++|.+.+ + +|||+||..+|+.... .+..|+.     +..+.+.|+.
T Consensus        85 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~-----~~~~~~~Y~~  159 (357)
T 1rkx_A           85 FHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENE-----AMGGYDPYSN  159 (357)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTS-----CBCCSSHHHH
T ss_pred             EECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCC-----CCCCCCccHH
Confidence            99999654333456678899999999999999999887 6 9999999999987543 3566654     6667889999


Q ss_pred             HHHHHHHHHHHHHHHh---------CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHH
Q 025022          179 GKRVAETLMFDYHRQH---------GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD  249 (259)
Q Consensus       179 sK~~~e~~~~~~~~~~---------~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  249 (259)
                      +|.++|.+++.++.++         +++++++||+++|||+... ...++..++..+..+.++.+. +++..++|+|++|
T Consensus       160 sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~-~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~v~v~D  237 (357)
T 1rkx_A          160 SKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA-LDRIVPDILRAFEQSQPVIIR-NPHAIRPWQHVLE  237 (357)
T ss_dssp             HHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC-SSCHHHHHHHHHHTTCCEECS-CTTCEECCEETHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCc-cccHHHHHHHHHhcCCCEEEC-CCCCeeccEeHHH
Confidence            9999999999988764         8999999999999998532 235788888888888877654 5678899999999


Q ss_pred             HHHHHHhhh
Q 025022          250 MVCKSCFLA  258 (259)
Q Consensus       250 ~a~~~~~~l  258 (259)
                      +|++++.++
T Consensus       238 va~a~~~~~  246 (357)
T 1rkx_A          238 PLSGYLLLA  246 (357)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=100.00  E-value=6.7e-35  Score=242.36  Aligned_cols=226  Identities=28%  Similarity=0.398  Sum_probs=174.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccCCCceeEeecccCccc-----cCC--cCEEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPL-----LIE--VDQIYH  103 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~dl~~~~-----~~~--~d~vi~  103 (259)
                      ||+|||||||||||++|+++|+++|++ |++++|..... ......+....+++++.+|+++.+     +.+  +|+|||
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGID-LIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH   79 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCCE-EEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEE
Confidence            479999999999999999999999998 99998753222 112222222246889999999876     344  999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCCCCCCCC-----------cCCCCCC
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESY-----------WGNVNPI  170 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~~~~e~~-----------~~~~~~~  170 (259)
                      +||.........+++..+++|+.++.+++++|.+.++  +|||+||..+|+.....+..|+.           ..+..+.
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~  159 (347)
T 1orr_A           80 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL  159 (347)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred             CCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCC
Confidence            9997653333457788999999999999999999876  89999999999865443322210           1111255


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCC-----CeEEecCCceeeee
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGE-----PLTVQAPGTQTRSF  244 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  244 (259)
                      .+.+.|+.+|.++|.+++.++.+++++++++||+++|||+..... ...+..++..+..+.     ++.++++++..++|
T Consensus       160 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~  239 (347)
T 1orr_A          160 DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDV  239 (347)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEEC
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecCCcceEee
Confidence            677899999999999999998888999999999999999854321 235666766666554     67788888999999


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      +|++|+|+++++++
T Consensus       240 i~v~Dva~a~~~~~  253 (347)
T 1orr_A          240 LHAEDMISLYFTAL  253 (347)
T ss_dssp             EEHHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHHH
Confidence            99999999998765

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=100.00  E-value=3.8e-34  Score=238.01  Aligned_cols=221  Identities=27%  Similarity=0.390  Sum_probs=175.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC------Ccchhhhcc--CCCceeEeecccCccc-----cC--
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG------SKDNLRKWI--GHPRFELIRHDVTEPL-----LI--   96 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~------~~~~~~~~~--~~~~~~~~~~dl~~~~-----~~--   96 (259)
                      +|+|+||||+||||++++++|+++|++ |++++|....      ..+.++.+.  ...++.++.+|+++.+     +.  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYL-PVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCC-EEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence            579999999999999999999999999 9999876433      222222111  1246889999999876     33  


Q ss_pred             CcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCC-CC
Q 025022           97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RS  174 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~-~~  174 (259)
                      ++|+|||+||.........++...+++|+.++.+++++|++.++ +|||+||..+|+.....+++|+.     +..| .+
T Consensus        81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~-----~~~p~~~  155 (348)
T 1ek6_A           81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-----PTGGCTN  155 (348)
T ss_dssp             CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS-----CCCCCSS
T ss_pred             CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCC-----CCCCCCC
Confidence            79999999997643333456788999999999999999999888 99999999999977677788876     5555 78


Q ss_pred             chHHHHHHHHHHHHHHHHH-hCCcEEEEEeccccCCCC------CCC--CccHHHHHHHHHH-cCCCeEEec------CC
Q 025022          175 CYDEGKRVAETLMFDYHRQ-HGIEIRIARIFNTYGPRM------NID--DGRVVSNFIAQAI-RGEPLTVQA------PG  238 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~-~~~~~~~lr~~~v~g~~~------~~~--~~~~~~~~~~~~~-~~~~~~~~~------~~  238 (259)
                      .|+.+|.++|.+++.++.+ .+++++++||+++|||+.      .+.  ...+++.+..... .+.++.+++      ++
T Consensus       156 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  235 (348)
T 1ek6_A          156 PYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDG  235 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSS
T ss_pred             chHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCC
Confidence            9999999999999999877 239999999999999853      111  1346777777666 667777776      56


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +..++|+|++|+|++++.++
T Consensus       236 ~~~~~~i~v~Dva~a~~~~~  255 (348)
T 1ek6_A          236 TGVRDYIHVVDLAKGHIAAL  255 (348)
T ss_dssp             SCEECEEEHHHHHHHHHHHH
T ss_pred             ceEEeeEEHHHHHHHHHHHH
Confidence            78899999999999998764

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=100.00  E-value=4.9e-34  Score=240.05  Aligned_cols=220  Identities=25%  Similarity=0.321  Sum_probs=178.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      ..+|+|+|||||||||++|+++|+++|++ |++++|+........     ..+++++.+|+.+.+     +.++|+|||+
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~-----~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~  100 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHY-VIASDWKKNEHMTED-----MFCDEFHLVDLRVMENCLKVTEGVDHVFNL  100 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCSSSCGG-----GTCSEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCe-EEEEECCCccchhhc-----cCCceEEECCCCCHHHHHHHhCCCCEEEEC
Confidence            35689999999999999999999999998 999998754432111     237889999999876     6789999999


Q ss_pred             cCCCCcccc-ccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCC-----CCCCCCCcCCCCCCCCCCchH
Q 025022          105 ACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-----HPQDESYWGNVNPIGVRSCYD  177 (259)
Q Consensus       105 a~~~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~-----~~~~e~~~~~~~~~~~~~~Y~  177 (259)
                      |+....... ..+++..+++|+.++.+++++|++.++ +|||+||..+|+....     .+++|+++.   +..+.+.|+
T Consensus       101 A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~---~~~~~~~Y~  177 (379)
T 2c5a_A          101 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW---PAEPQDAFG  177 (379)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGS---SBCCSSHHH
T ss_pred             ceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCC---CCCCCChhH
Confidence            997643222 567888999999999999999999988 9999999999985322     235554321   345678899


Q ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCc--cHHHHHHHHHHcCCC-eEEecCCceeeeeeeHHHHHHHH
Q 025022          178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG--RVVSNFIAQAIRGEP-LTVQAPGTQTRSFCYVSDMVCKS  254 (259)
Q Consensus       178 ~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~~~  254 (259)
                      .+|.++|.+++.++.+++++++++||+++|||+......  ..+..++..+..+.+ +.+++++...++|+|++|+|+++
T Consensus       178 ~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai  257 (379)
T 2c5a_A          178 LEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGV  257 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHH
Confidence            999999999999988889999999999999998654322  267778888777776 78888888999999999999999


Q ss_pred             Hhhh
Q 025022          255 CFLA  258 (259)
Q Consensus       255 ~~~l  258 (259)
                      +.++
T Consensus       258 ~~~l  261 (379)
T 2c5a_A          258 LRLT  261 (379)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8775

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=100.00  E-value=4.6e-34  Score=238.63  Aligned_cols=218  Identities=28%  Similarity=0.457  Sum_probs=178.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCC-CCcchhhhccCCCceeEeecccCccc-----cC--CcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~  103 (259)
                      |+||||||+||||++|++.|++. |++ |++++|... ...+.+.......+++++.+|+++.+     +.  ++|+|||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDT-VVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCE-EEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCe-EEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEE
Confidence            58999999999999999999998 687 999988642 22233333222357899999999876     33  8999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh--CC--------eEEEEecceeecCCCC--C--------CCCCCC
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--GA--------RILLTSTSEVYGDPLV--H--------PQDESY  163 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~--------~~i~~Ss~~~~~~~~~--~--------~~~e~~  163 (259)
                      +||.........+++..+++|+.++.+++++|.+.  ++        +|||+||..+|+....  .        +++|+.
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~~  159 (361)
T 1kew_A           80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT  159 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTS
T ss_pred             CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCCC
Confidence            99976533344567889999999999999999887  53        8999999999986432  1        556654


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                           +..+.+.|+.+|.++|.+++.++.+++++++++||+++|||+..+  ..++..++..+..+.++.+++++...++
T Consensus       160 -----~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (361)
T 1kew_A          160 -----AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNALEGKPLPIYGKGDQIRD  232 (361)
T ss_dssp             -----CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT--TSHHHHHHHHHHHTCCEEEETTSCCEEE
T ss_pred             -----CCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCc--ccHHHHHHHHHHcCCCceEcCCCceeEe
Confidence                 667788999999999999999988889999999999999998542  2367778888888888888888889999


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      |+|++|+|+++++++
T Consensus       233 ~i~v~Dva~a~~~~~  247 (361)
T 1kew_A          233 WLYVEDHARALHMVV  247 (361)
T ss_dssp             EEEHHHHHHHHHHHH
T ss_pred             eEEHHHHHHHHHHHH
Confidence            999999999998765

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=100.00  E-value=4.6e-34  Score=241.56  Aligned_cols=221  Identities=25%  Similarity=0.392  Sum_probs=173.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHH-hcCCCeEEEEcCCCCCC--------cchhh----hccC---CCc---eeEeecccCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGS--------KDNLR----KWIG---HPR---FELIRHDVTE   92 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~--------~~~~~----~~~~---~~~---~~~~~~dl~~   92 (259)
                      +|+||||||+||||++|+++|+ ++|++ |++++|.....        .+.+.    ....   ..+   +.++.+|+++
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   80 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHS-VVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCE-EEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCE-EEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence            5799999999999999999999 99998 99998865432        22221    1111   124   8899999998


Q ss_pred             cc-----cC--C-cCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCC-------C
Q 025022           93 PL-----LI--E-VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-------V  156 (259)
Q Consensus        93 ~~-----~~--~-~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~-------~  156 (259)
                      .+     +.  + +|+|||+||.........+++..+++|+.++.+++++|++.++ +|||+||..+|+...       .
T Consensus        81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~  160 (397)
T 1gy8_A           81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA  160 (397)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccc
Confidence            76     22  4 9999999997653333456788999999999999999999988 999999999998765       4


Q ss_pred             CCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC-------CCccHHHHHH----HH
Q 025022          157 HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI-------DDGRVVSNFI----AQ  225 (259)
Q Consensus       157 ~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~-------~~~~~~~~~~----~~  225 (259)
                      .+++|++     +..|.+.|+.+|.++|.+++.++.+++++++++||+++|||+...       ....++..++    ..
T Consensus       161 ~~~~E~~-----~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~  235 (397)
T 1gy8_A          161 EPIDINA-----KKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSD  235 (397)
T ss_dssp             CCBCTTS-----CCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHH
T ss_pred             cCcCccC-----CCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHH
Confidence            6777776     667788999999999999999998889999999999999997421       1234566555    23


Q ss_pred             HHcCC------------CeEEec------CCceeeeeeeHHHHHHHHHhhh
Q 025022          226 AIRGE------------PLTVQA------PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       226 ~~~~~------------~~~~~~------~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +..+.            ++.+++      +++..++|+|++|+|++++.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l  286 (397)
T 1gy8_A          236 IAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILAL  286 (397)
T ss_dssp             HSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHH
T ss_pred             HHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHH
Confidence            33332            467776      6788999999999999998764

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=100.00  E-value=3.1e-34  Score=243.13  Aligned_cols=227  Identities=26%  Similarity=0.332  Sum_probs=175.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------chhhhc--cCCCceeEeecccC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------DNLRKW--IGHPRFELIRHDVT   91 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------~~~~~~--~~~~~~~~~~~dl~   91 (259)
                      .++++|||||||||||++|+++|+++|++ |++++|......                +.+...  ....+++++.+|++
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~   87 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNYE-VCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDIC   87 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTT
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCCe-EEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCC
Confidence            46899999999999999999999999998 999887432110                011110  11247889999999


Q ss_pred             ccc-----cCC--cCEEEEccCCCCccccccCh---hHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCCCC
Q 025022           92 EPL-----LIE--VDQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQ  159 (259)
Q Consensus        92 ~~~-----~~~--~d~vi~~a~~~~~~~~~~~~---~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~~~  159 (259)
                      +.+     +.+  +|+|||+||.........++   ...+++|+.++.+++++|++.+.  +|||+||..+|+... .+.
T Consensus        88 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~  166 (404)
T 1i24_A           88 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDI  166 (404)
T ss_dssp             SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCB
T ss_pred             CHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCC
Confidence            876     334  99999999976532222333   34789999999999999999874  999999999998654 456


Q ss_pred             CCCCcCCC---------CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-------------C--
Q 025022          160 DESYWGNV---------NPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID-------------D--  215 (259)
Q Consensus       160 ~e~~~~~~---------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~-------------~--  215 (259)
                      +|+.|...         .+..|.+.|+.+|.++|.+++.++.+++++++++||+++|||+..+.             .  
T Consensus       167 ~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~  246 (404)
T 1i24_A          167 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVF  246 (404)
T ss_dssp             CSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTT
T ss_pred             CccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccch
Confidence            66533211         25567789999999999999999888899999999999999986421             0  


Q ss_pred             ccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          216 GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+..++..+..+.++.+++++...++|+|++|+|++++.++
T Consensus       247 ~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l  289 (404)
T 1i24_A          247 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAI  289 (404)
T ss_dssp             CCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHH
Confidence            3478888888888988888898889999999999999998765

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=100.00  E-value=3.1e-33  Score=232.04  Aligned_cols=223  Identities=23%  Similarity=0.244  Sum_probs=176.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc-chhhhccCCCceeEeecccCccc-----cC--CcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~v  101 (259)
                      |++|+|+|||||||||++++++|+++|++ |++++|+..... ..+.......+++++.+|+++.+     +.  ++|+|
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   79 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGYE-VYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEV   79 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEE
Confidence            45789999999999999999999999998 999998755432 22222222347889999999876     23  57999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      ||+||.........+++..+++|+.++.+++++|.+.++  +|||+||..+|+.....+++|+.     +..+.+.|+.+
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~-----~~~~~~~Y~~s  154 (345)
T 2z1m_A           80 YNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKT-----PFYPRSPYAVA  154 (345)
T ss_dssp             EECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTS-----CCCCCSHHHHH
T ss_pred             EECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccC-----CCCCCChhHHH
Confidence            999997654334567888999999999999999998874  99999999999987766777775     66778899999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCC-eEEecCCceeeeeeeHHHHHHHHHhh
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGEP-LTVQAPGTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~~~~~~  257 (259)
                      |.+.|.+++.++.+++++++++|+.++|||+..... ...+..++..+..+.. ...++++...++|+|++|+|++++++
T Consensus       155 K~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~  234 (345)
T 2z1m_A          155 KLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLM  234 (345)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHH
Confidence            999999999999888999999999999999854321 1123444555555643 33567778889999999999999887


Q ss_pred             h
Q 025022          258 A  258 (259)
Q Consensus       258 l  258 (259)
                      +
T Consensus       235 ~  235 (345)
T 2z1m_A          235 M  235 (345)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=100.00  E-value=1.5e-33  Score=235.21  Aligned_cols=216  Identities=22%  Similarity=0.297  Sum_probs=174.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC-----C
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI-----E   97 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~-----~   97 (259)
                      .+++|+|+|||||||||++|+++|+++| +. |++++|......  ....   .++. +.+|+.+.+     ..     +
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~--~~~~---~~~~-~~~d~~~~~~~~~~~~~~~~~~  115 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITD-ILVVDNLKDGTK--FVNL---VDLN-IADYMDKEDFLIQIMAGEEFGD  115 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCC-EEEEECCSSGGG--GGGT---TTSC-CSEEEEHHHHHHHHHTTCCCSS
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcE-EEEEecCCCcch--hhcc---cCce-EeeecCcHHHHHHHHhhcccCC
Confidence            3557899999999999999999999999 77 999988654321  1111   1233 667777655     22     6


Q ss_pred             cCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchH
Q 025022           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYD  177 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~  177 (259)
                      +|+|||+||....  ...+++..+++|+.++.+++++|.+.+++|||+||..+|+.....+++|+.     +..|.+.|+
T Consensus       116 ~d~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS~~v~g~~~~~~~~E~~-----~~~p~~~Y~  188 (357)
T 2x6t_A          116 VEAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESRE-----YEKPLNVFG  188 (357)
T ss_dssp             CCEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGCSCSSCCCSSGG-----GCCCSSHHH
T ss_pred             CCEEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcchHHhCCCCCCCcCCcC-----CCCCCChhH
Confidence            9999999997653  355678899999999999999999887799999999999876666788876     667788999


Q ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCce-eeeeeeHHHHHHHH
Q 025022          178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQ-TRSFCYVSDMVCKS  254 (259)
Q Consensus       178 ~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~~  254 (259)
                      .+|.++|.+++.++.+.+++++++||+++|||+.....  ...+..++..+..+.++.+++++.. .++|+|++|+|+++
T Consensus       189 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai  268 (357)
T 2x6t_A          189 YSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVN  268 (357)
T ss_dssp             HHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHH
Confidence            99999999999998888999999999999999854321  2477888888888888888888888 89999999999999


Q ss_pred             Hhhh
Q 025022          255 CFLA  258 (259)
Q Consensus       255 ~~~l  258 (259)
                      +.++
T Consensus       269 ~~~~  272 (357)
T 2x6t_A          269 LWFL  272 (357)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8775

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=100.00  E-value=8.2e-34  Score=232.54  Aligned_cols=212  Identities=20%  Similarity=0.223  Sum_probs=169.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhc--CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIY  102 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi  102 (259)
                      +|+|+|||||||||++|+++|+++  |++ |++++|+....  .+.     .+++++.+|+++.+     +.  ++|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~--~~~-----~~~~~~~~D~~d~~~~~~~~~~~~~d~vi   73 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTEN-VIASDIRKLNT--DVV-----NSGPFEVVNALDFNQIEHLVEVHKITDIY   73 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGG-EEEEESCCCSC--HHH-----HSSCEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCE-EEEEcCCCccc--ccc-----CCCceEEecCCCHHHHHHHHhhcCCCEEE
Confidence            478999999999999999999999  888 99998865442  111     25778999999876     33  899999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCC-CCCCCCCcCCCCCCCCCCchHHHH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~-~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      |+||.... ....+++..+++|+.++.+++++|++.++ +|||+||..+|+.... .+.+|+.     +..|.+.|+.+|
T Consensus        74 h~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~-----~~~~~~~Y~~sK  147 (312)
T 2yy7_A           74 LMAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYT-----IMEPSTVYGISK  147 (312)
T ss_dssp             ECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSSC-----BCCCCSHHHHHH
T ss_pred             ECCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccccC-----cCCCCchhHHHH
Confidence            99987543 22456788999999999999999999988 9999999999986432 4555654     667788999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC---ccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhh
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD---GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~  257 (259)
                      .+.|.+++.++.+++++++++||+++|||...+..   ...+..+.. ...++++..+++++..++|+|++|+|++++.+
T Consensus       148 ~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~  226 (312)
T 2yy7_A          148 QAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYK-AIADKKYECFLSSETKMPMMYMDDAIDATINI  226 (312)
T ss_dssp             HHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHH-HHHTSEEEESSCTTCCEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHH-HHcCCCeEEecCCCceeeeeeHHHHHHHHHHH
Confidence            99999999998888999999999999998754332   123344443 34445566777888899999999999999876


Q ss_pred             h
Q 025022          258 A  258 (259)
Q Consensus       258 l  258 (259)
                      +
T Consensus       227 ~  227 (312)
T 2yy7_A          227 M  227 (312)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=100.00  E-value=9.7e-34  Score=233.02  Aligned_cols=208  Identities=22%  Similarity=0.301  Sum_probs=167.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIY  102 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi  102 (259)
                      |++|+|+|||||||||++|+++|+++|++ |+++.|+.                   .+|+.+.+     +.  ++|+||
T Consensus         1 M~~~~ilVtGatG~iG~~l~~~L~~~g~~-v~~~~r~~-------------------~~D~~d~~~~~~~~~~~~~d~vi   60 (321)
T 1e6u_A            1 MAKQRVFIAGHRGMVGSAIRRQLEQRGDV-ELVLRTRD-------------------ELNLLDSRAVHDFFASERIDQVY   60 (321)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTE-EEECCCTT-------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCe-EEEEecCc-------------------cCCccCHHHHHHHHHhcCCCEEE
Confidence            45689999999999999999999999998 88887642                   25666554     44  899999


Q ss_pred             EccCCCCc-cccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCC-CchHHH
Q 025022          103 HLACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEG  179 (259)
Q Consensus       103 ~~a~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~s  179 (259)
                      |+|+.... .....++...+++|+.++.+++++|++.++ +|||+||..+|+.....+++|+++... +..|. +.|+.+
T Consensus        61 h~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~-~~~p~~~~Y~~s  139 (321)
T 1e6u_A           61 LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQG-TLEPTNEPYAIA  139 (321)
T ss_dssp             ECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSS-CCCGGGHHHHHH
T ss_pred             EcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccccccC-CCCCCCCccHHH
Confidence            99997642 123456788999999999999999999988 999999999999776777888754321 33443 589999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC--CccHHHHHHHHHHc----C-CCeEEecCCceeeeeeeHHHHHH
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIR----G-EPLTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      |.++|.+++.++++.+++++++||+++|||+..+.  ...++..++..+..    + .++.++++++..++|+|++|+|+
T Consensus       140 K~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~  219 (321)
T 1e6u_A          140 KIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAA  219 (321)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHH
Confidence            99999999999888899999999999999986532  12467777776654    3 56777888899999999999999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      +++.++
T Consensus       220 ~~~~~~  225 (321)
T 1e6u_A          220 ASIHVM  225 (321)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998765

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=100.00  E-value=7.8e-33  Score=229.24  Aligned_cols=220  Identities=27%  Similarity=0.451  Sum_probs=168.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc--cCCCceeEeecccCccc-----c--CCcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL-----L--IEVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~dl~~~~-----~--~~~d~vi~  103 (259)
                      |+|+||||+||||++++++|+++|++ |++++|............  ....++.++.+|+++.+     +  .++|+|||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih   79 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGHD-VIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEE
Confidence            58999999999999999999999998 888876543322222111  01236788999999876     2  26999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCC-CCchHHHHH
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKR  181 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~sK~  181 (259)
                      +||.........++...+++|+.++.+++++|++.++ +|||+||..+|+.....+.+|+.     +..+ .+.|+.+|.
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~-----~~~~~~~~Y~~sK~  154 (338)
T 1udb_A           80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSKL  154 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS-----CCCCCSSHHHHHHH
T ss_pred             CCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCccc-----CCCCCCChHHHHHH
Confidence            9997543223445678899999999999999999888 99999999999876666777765     4433 689999999


Q ss_pred             HHHHHHHHHHHHh-CCcEEEEEeccccCCCC------CCC--CccHHHHHHHHHH-cCCCeEEec------CCceeeeee
Q 025022          182 VAETLMFDYHRQH-GIEIRIARIFNTYGPRM------NID--DGRVVSNFIAQAI-RGEPLTVQA------PGTQTRSFC  245 (259)
Q Consensus       182 ~~e~~~~~~~~~~-~~~~~~lr~~~v~g~~~------~~~--~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~i  245 (259)
                      +.|.+++.++.+. +++++++||+++|||..      .+.  ...++..+..... .+..+.+++      ++...++|+
T Consensus       155 ~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i  234 (338)
T 1udb_A          155 MVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYI  234 (338)
T ss_dssp             HHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEE
T ss_pred             HHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeE
Confidence            9999999998776 79999999999999842      111  1335666655555 445566654      467789999


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      |++|+|++++.++
T Consensus       235 ~v~Dva~a~~~~l  247 (338)
T 1udb_A          235 HVMDLADGHVVAM  247 (338)
T ss_dssp             EHHHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHH
Confidence            9999999988764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4.9e-33  Score=230.75  Aligned_cols=206  Identities=13%  Similarity=0.060  Sum_probs=161.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEcc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a  105 (259)
                      ++|+|+|||||||||++|+++|+++|++ |++++|+..... .+.    ..+++++.+|+++.+     +.++|+|||+|
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~-~l~----~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a   85 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGHD-LVLIHRPSSQIQ-RLA----YLEPECRVAEMLDHAGLERALRGLDGVIFSA   85 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECTTSCGG-GGG----GGCCEEEECCTTCHHHHHHHTTTCSEEEEC-
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEecChHhhh-hhc----cCCeEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            3479999999999999999999999998 999998654322 121    136889999999876     67899999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCC--CCCCCCCcCCCCCCCC----CCchHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV--HPQDESYWGNVNPIGV----RSCYDE  178 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~--~~~~e~~~~~~~~~~~----~~~Y~~  178 (259)
                      |...  .+..+++..+++|+.++.+++++|++.++ +|||+||..+|+....  .+ +|+.     +..|    .+.|+.
T Consensus        86 ~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~~-----~~~p~~~~~~~Y~~  157 (342)
T 2x4g_A           86 GYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEGL-----FYDSLPSGKSSYVL  157 (342)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTTC-----CCSSCCTTSCHHHH
T ss_pred             ccCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCCC-----CCCccccccChHHH
Confidence            9654  23456778899999999999999999998 9999999999986544  34 6665     5566    789999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC-CCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhh
Q 025022          179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRM-NIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       179 sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~  257 (259)
                      +|.+.|.+++.++.. +++++++||+++|||+. .+   . +..++..+..+....+   ++..++|+|++|+|++++.+
T Consensus       158 sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~---~-~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~  229 (342)
T 2x4g_A          158 CKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGP---T-TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMA  229 (342)
T ss_dssp             HHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSC---S-TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCccc---c-HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHH
Confidence            999999999998876 99999999999999985 21   2 4556666777766555   35788999999999999877


Q ss_pred             h
Q 025022          258 A  258 (259)
Q Consensus       258 l  258 (259)
                      +
T Consensus       230 ~  230 (342)
T 2x4g_A          230 L  230 (342)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=100.00  E-value=1.9e-32  Score=229.77  Aligned_cols=221  Identities=24%  Similarity=0.280  Sum_probs=172.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhcc-----CCCceeEeecccCccc-----cC--Cc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI-----GHPRFELIRHDVTEPL-----LI--EV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~-----~~~~~~~~~~dl~~~~-----~~--~~   98 (259)
                      ||+|+||||+||||++++++|+++|++ |++++|+.... .+.+....     ...++.++.+|+++.+     +.  ++
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   79 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYE-VHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP   79 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence            479999999999999999999999998 99999865431 11222211     1247889999999876     22  57


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC----eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS  174 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (259)
                      |+|||+||.........++...+++|+.++.+++++|.+.++    +||++||..+|+.....+.+|+.     +..|.+
T Consensus        80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~-----~~~~~~  154 (372)
T 1db3_A           80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETT-----PFYPRS  154 (372)
T ss_dssp             SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTS-----CCCCCS
T ss_pred             CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccC-----CCCCCC
Confidence            999999997654444567788899999999999999998873    99999999999976666777876     667788


Q ss_pred             chHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCC-eEEecCCceeeeeeeHHHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGEP-LTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      .|+.+|.++|.+++.++.+++++++++|++.+|||+..... ...+..++..+..+.. ...+++++..++|+|++|+|+
T Consensus       155 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~  234 (372)
T 1db3_A          155 PYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVK  234 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHH
Confidence            99999999999999999888999999999999999854321 1234556666666653 455688889999999999999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      +++.++
T Consensus       235 a~~~~~  240 (372)
T 1db3_A          235 MQWMML  240 (372)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            998765

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=100.00  E-value=2.9e-33  Score=229.02  Aligned_cols=211  Identities=23%  Similarity=0.317  Sum_probs=163.2

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC-----CcCEEE
Q 025022           34 RILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI-----EVDQIY  102 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~-----~~d~vi  102 (259)
                      +|+|||||||||++|+++|+++| +. |++++|......  ....   .++. +.+|+.+.+     ..     ++|+||
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~-V~~~~r~~~~~~--~~~~---~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi   73 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITD-ILVVDNLKDGTK--FVNL---VDLN-IADYMDKEDFLIQIMAGEEFGDVEAIF   73 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCC-EEEEECCSSGGG--GHHH---HTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEE
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcE-EEEEccCCCCch--hhhc---Ccce-eccccccHHHHHHHHhccccCCCcEEE
Confidence            58999999999999999999999 77 999988654321  1111   1223 667877655     33     599999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV  182 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~  182 (259)
                      |+||....  ...+++..+++|+.++.+++++|++.+++|||+||..+|+.....+.+|+.     +..|.+.|+.+|.+
T Consensus        74 ~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~-----~~~p~~~Y~~sK~~  146 (310)
T 1eq2_A           74 HEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESRE-----YEKPLNVYGYSKFL  146 (310)
T ss_dssp             ECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSGG-----GCCCSSHHHHHHHH
T ss_pred             ECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeHHHhCCCCCCCCCCCC-----CCCCCChhHHHHHH
Confidence            99997653  456788899999999999999999987799999999999976666777876     66778899999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCce-eeeeeeHHHHHHHHHhhh
Q 025022          183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIRGEPLTVQAPGTQ-TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       183 ~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~~~~~l  258 (259)
                      +|.+++.++.+++++++++||+++|||+....  ...++..++..+..+.++.+++++.. .++|+|++|+|++++.++
T Consensus       147 ~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~  225 (310)
T 1eq2_A          147 FDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFL  225 (310)
T ss_dssp             HHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHH
Confidence            99999999888899999999999999985421  12477888888888888887888888 899999999999998765

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.9e-32  Score=227.28  Aligned_cols=219  Identities=20%  Similarity=0.268  Sum_probs=178.2

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcC-------CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----c
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENE-------KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L   95 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g-------~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~   95 (259)
                      ..+++|+|+||||+||||++|+++|+++|       ++ |++++|+......     ....++.++.+|+++.+     +
T Consensus        10 ~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~-V~~~~r~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~   83 (342)
T 2hrz_A           10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEK-FTLIDVFQPEAPA-----GFSGAVDARAADLSAPGEAEKLV   83 (342)
T ss_dssp             SCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEE-EEEEESSCCCCCT-----TCCSEEEEEECCTTSTTHHHHHH
T ss_pred             CCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCce-EEEEEccCCcccc-----ccCCceeEEEcCCCCHHHHHHHH
Confidence            34678999999999999999999999999       66 9999886543221     11347889999999877     3


Q ss_pred             -CCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-----C-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           96 -IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        96 -~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                       .++|+|||+||.... ....++...+++|+.++.+++++|++.+     + +|||+||..+|+.....+++|++     
T Consensus        84 ~~~~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~-----  157 (342)
T 2hrz_A           84 EARPDVIFHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEF-----  157 (342)
T ss_dssp             HTCCSEEEECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTC-----
T ss_pred             hcCCCEEEECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCC-----
Confidence             589999999997542 2345678889999999999999998876     5 99999999999876556777876     


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccC-CCCCCCC-ccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG-PRMNIDD-GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      +..+.+.|+.+|.++|.+++.++.+.+++.+++|++.+|| |+..... ..++..++.....+.+..+++.++...+++|
T Consensus       158 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (342)
T 2hrz_A          158 HTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHAS  237 (342)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEEC
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEe
Confidence            6677889999999999999999888789999999999998 7643221 3467777888888887776666667788999


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|+|++++.++
T Consensus       238 v~Dva~~~~~~~  249 (342)
T 2hrz_A          238 PRSAVGFLIHGA  249 (342)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            999999998764

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=1.5e-32  Score=230.65  Aligned_cols=220  Identities=22%  Similarity=0.225  Sum_probs=174.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhcc------CCCceeEeecccCccc-----cC--Cc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI------GHPRFELIRHDVTEPL-----LI--EV   98 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~------~~~~~~~~~~dl~~~~-----~~--~~   98 (259)
                      |+|+||||+||||++++++|+++|++ |++++|+.... ...+....      ...++.++.+|+++.+     +.  ++
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~  103 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYE-VHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP  103 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCE-EEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCC
Confidence            68999999999999999999999998 99998875432 11222211      1247889999999876     22  47


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC----eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS  174 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (259)
                      |+|||+||.........+++..+++|+.++.+++++|.+.++    +|||+||..+|+.....+++|++     +..|.+
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~-----~~~~~~  178 (375)
T 1t2a_A          104 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETT-----PFYPRS  178 (375)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTS-----CCCCCS
T ss_pred             CEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccC-----CCCCCC
Confidence            999999997654333456788999999999999999998873    99999999999876666778876     667788


Q ss_pred             chHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCC-CeEEecCCceeeeeeeHHHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGE-PLTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      .|+.+|.+.|.+++.++.+++++++++|++++|||+..... ...+..++..+..+. ....+++++..++|+|++|+|+
T Consensus       179 ~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~  258 (375)
T 1t2a_A          179 PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE  258 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHH
Confidence            99999999999999999888999999999999999754321 123445555566665 3445688889999999999999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      +++.++
T Consensus       259 a~~~~~  264 (375)
T 1t2a_A          259 AMWLML  264 (375)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998765

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=100.00  E-value=4.7e-33  Score=230.70  Aligned_cols=223  Identities=22%  Similarity=0.199  Sum_probs=173.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---CCCceeEe-ecccCccc-----cCCcCE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELI-RHDVTEPL-----LIEVDQ  100 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~-~~dl~~~~-----~~~~d~  100 (259)
                      +++|+||||||+||||++++++|+++|++ |++++|+..... .+...+   ...+++++ .+|+++.+     +.++|+
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYK-VRGTARSASKLA-NLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHH-HHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCcccHH-HHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence            56789999999999999999999999998 999988543211 111111   01468888 89999876     558999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHH-hCC-eEEEEecceeecCCC----CCCCCCCCcCCC-------
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR-VGA-RILLTSTSEVYGDPL----VHPQDESYWGNV-------  167 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~-~~i~~Ss~~~~~~~~----~~~~~e~~~~~~-------  167 (259)
                      |||+||....   ..++...+++|+.++.+++++|.+ .++ +|||+||..+|+...    ..+++|++|.+.       
T Consensus        87 vih~A~~~~~---~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  163 (342)
T 1y1p_A           87 VAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT  163 (342)
T ss_dssp             EEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred             EEEeCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhcc
Confidence            9999997643   246788999999999999999985 566 999999999886432    156677764311       


Q ss_pred             ----CCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCc-cHHHHHHHHHHcCCCeEEecCCce
Q 025022          168 ----NPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDG-RVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       168 ----~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                          .+..+.+.|+.+|.++|.+++.++.++  +++++++||+++|||...+... ..+..++..+..+.+..+++.+ .
T Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  242 (342)
T 1y1p_A          164 LPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALM-P  242 (342)
T ss_dssp             SCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTC-C
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccccC-C
Confidence                123456789999999999999998776  6889999999999998654332 2778888888888877666654 6


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      .++|+|++|+|++++.++
T Consensus       243 ~~~~v~v~Dva~a~~~~~  260 (342)
T 1y1p_A          243 PQYYVSAVDIGLLHLGCL  260 (342)
T ss_dssp             SEEEEEHHHHHHHHHHHH
T ss_pred             cCCEeEHHHHHHHHHHHH
Confidence            789999999999998764

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=100.00  E-value=5.1e-33  Score=225.30  Aligned_cols=190  Identities=24%  Similarity=0.224  Sum_probs=163.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~~a  105 (259)
                      |+|+|||||||||+++++.|+++|++ |++++|.                    .+|+.+.+     +.  ++|+|||+|
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~--------------------~~D~~d~~~~~~~~~~~~~d~vi~~a   64 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYD-IYPFDKK--------------------LLDITNISQVQQVVQEIRPHIIIHCA   64 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEE-EEEECTT--------------------TSCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCE-EEEeccc--------------------ccCCCCHHHHHHHHHhcCCCEEEECC
Confidence            48999999999999999999999998 9999882                    25666555     23  699999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      |.........++...+++|+.++.+++++|++.+++|||+||..+|+.....+++|++     +..|.+.|+.+|.++|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~vy~~~~~~~~~E~~-----~~~p~~~Y~~sK~~~E~  139 (287)
T 3sc6_A           65 AYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFH-----NPAPINIYGASKYAGEQ  139 (287)
T ss_dssp             CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCCCCSSCBCTTS-----CCCCCSHHHHHHHHHHH
T ss_pred             cccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchhhhcCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHH
Confidence            9876545557889999999999999999999998899999999999988778888887     77888999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +++.++    .+++++||+++|||+.    ..++..++..+..+.++.++++  ..++|+|++|+|++++.++
T Consensus       140 ~~~~~~----~~~~ilR~~~v~G~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~  202 (287)
T 3sc6_A          140 FVKELH----NKYFIVRTSWLYGKYG----NNFVKTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLI  202 (287)
T ss_dssp             HHHHHC----SSEEEEEECSEECSSS----CCHHHHHHHHHTTCSEEEEECS--CEECCEEHHHHHHHHHHHH
T ss_pred             HHHHhC----CCcEEEeeeeecCCCC----CcHHHHHHHHHHcCCCeEeecC--cccCceEHHHHHHHHHHHH
Confidence            987664    4689999999999874    3477888888888888888764  7889999999999998875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=100.00  E-value=2.8e-32  Score=225.29  Aligned_cols=209  Identities=26%  Similarity=0.395  Sum_probs=164.9

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--Cc
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EV   98 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~   98 (259)
                      ....+++|+|+||||+||||++|+++|+++|++ |++++|+...........   .++.++.+|+++.+     +.  ++
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~l---~~v~~~~~Dl~d~~~~~~~~~~~~~   89 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHE-ILVIDNFATGKREVLPPV---AGLSVIEGSVTDAGLLERAFDSFKP   89 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCE-EEEEECCSSSCGGGSCSC---TTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCccchhhhhcc---CCceEEEeeCCCHHHHHHHHhhcCC
Confidence            344567899999999999999999999999998 999998654332211211   47889999999876     44  89


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCC--CCCCCCcCCCCCCCCCCc
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVH--PQDESYWGNVNPIGVRSC  175 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~--~~~e~~~~~~~~~~~~~~  175 (259)
                      |+|||+||..... ...+++  +++|+.++.+++++|.+.++ +|||+||..+|+.....  +++|+.       .+.+.
T Consensus        90 D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~-------~~~~~  159 (330)
T 2pzm_A           90 THVVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT-------APFTS  159 (330)
T ss_dssp             SEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC-------CCCSH
T ss_pred             CEEEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC-------CCCCh
Confidence            9999999976532 222333  89999999999999999888 99999999999865433  666653       45678


Q ss_pred             hHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHH-HH
Q 025022          176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC-KS  254 (259)
Q Consensus       176 Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~-~~  254 (259)
                      |+.+|.++|.+++.+    +++++++||+++|||+.   ...++..++..+..+.  .+++++. .++|+|++|+|+ ++
T Consensus       160 Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~---~~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~  229 (330)
T 2pzm_A          160 YGISKTAGEAFLMMS----DVPVVSLRLANVTGPRL---AIGPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIAD  229 (330)
T ss_dssp             HHHHHHHHHHHHHTC----SSCEEEEEECEEECTTC---CSSHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCC---CCCHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHH
Confidence            999999999998665    78999999999999984   2346677777766665  4455666 889999999999 99


Q ss_pred             Hhhh
Q 025022          255 CFLA  258 (259)
Q Consensus       255 ~~~l  258 (259)
                      ++++
T Consensus       230 ~~~~  233 (330)
T 2pzm_A          230 LSLQ  233 (330)
T ss_dssp             HHTS
T ss_pred             HHHh
Confidence            8775

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=100.00  E-value=5.1e-32  Score=227.90  Aligned_cols=219  Identities=20%  Similarity=0.216  Sum_probs=171.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccC-----CC-ceeEeecccCccc-----cC--Cc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-----HP-RFELIRHDVTEPL-----LI--EV   98 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~-----~~-~~~~~~~dl~~~~-----~~--~~   98 (259)
                      |+||||||+||||++|++.|+++|++ |++++|+.... ...+.....     .. ++.++.+|+++.+     +.  ++
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~  107 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYE-VHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP  107 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCE-EEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCC
Confidence            69999999999999999999999998 99999875431 111221111     12 6889999999876     23  47


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC------eEEEEecceeecCCCCCCCCCCCcCCCCCCCC
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA------RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV  172 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~  172 (259)
                      |+|||+||.........++...+++|+.++.+++++|.+.++      +|||+||..+|+.... +++|+.     +..|
T Consensus       108 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~~-----~~~~  181 (381)
T 1n7h_A          108 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETT-----PFHP  181 (381)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTTS-----CCCC
T ss_pred             CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCCC-----CCCC
Confidence            999999997654333457788999999999999999987642      9999999999997665 777776     6677


Q ss_pred             CCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCC-eEEecCCceeeeeeeHHHH
Q 025022          173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGEP-LTVQAPGTQTRSFCYVSDM  250 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~v~D~  250 (259)
                      .+.|+.+|.++|.+++.++.+++++++++|++++|||+..... ...+..++..+..+.. ...+++++..++|+|++|+
T Consensus       182 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dv  261 (381)
T 1n7h_A          182 RSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDY  261 (381)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHH
Confidence            8899999999999999999888999999999999999854321 1234455555555653 3456788889999999999


Q ss_pred             HHHHHhhh
Q 025022          251 VCKSCFLA  258 (259)
Q Consensus       251 a~~~~~~l  258 (259)
                      |++++.++
T Consensus       262 a~a~~~~~  269 (381)
T 1n7h_A          262 VEAMWLML  269 (381)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=100.00  E-value=5.7e-32  Score=222.11  Aligned_cols=208  Identities=25%  Similarity=0.286  Sum_probs=165.5

Q ss_pred             EEEEEcCchhhhHHHHHHHHhc--CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEEEc
Q 025022           34 RILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHL  104 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~~  104 (259)
                      +|+||||+||||++++++|+++  |++ |++++|+.....          ++.++.+|+.+.+     +.  ++|+|||+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~~----------~~~~~~~D~~d~~~~~~~~~~~~~d~vih~   69 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKN-VIASDIVQRDTG----------GIKFITLDVSNRDEIDRAVEKYSIDAIFHL   69 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGG-EEEEESSCCCCT----------TCCEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCE-EEEecCCCcccc----------CceEEEecCCCHHHHHHHHhhcCCcEEEEC
Confidence            5899999999999999999999  788 999887543221          4678899999876     33  89999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCC-CCCCCCCCcCCCCCCCCCCchHHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-VHPQDESYWGNVNPIGVRSCYDEGKRV  182 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~-~~~~~e~~~~~~~~~~~~~~Y~~sK~~  182 (259)
                      |+.... ....+++..+++|+.++.+++++|++.++ +|||+||..+|+... ..+.+|+.     +..|.+.|+.+|.+
T Consensus        70 a~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~-----~~~p~~~Y~~sK~~  143 (317)
T 3ajr_A           70 AGILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSIT-----ITRPRTMFGVTKIA  143 (317)
T ss_dssp             CCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSS-----CCCCCSHHHHHHHH
T ss_pred             CcccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccc-----cCCCCchHHHHHHH
Confidence            987542 22356788899999999999999999988 999999999998642 34455554     66788999999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       183 ~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .|.+++.++.+++++++++||+.+||+...+..  ...+..++.....+..+..+++++..++|+|++|+|++++.++
T Consensus       144 ~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l  221 (317)
T 3ajr_A          144 AELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLY  221 (317)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHH
Confidence            999999998888999999999999997643321  1223333344445556677777788999999999999998764

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=100.00  E-value=4.1e-32  Score=243.17  Aligned_cols=224  Identities=25%  Similarity=0.453  Sum_probs=182.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIY  102 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi  102 (259)
                      +++|+|+|||||||||++++++|+++ |++ |++++|+......    .....+++++.+|+++.+      +.++|+||
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~-V~~~~r~~~~~~~----~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vi  387 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHYE-VYGLDIGSDAISR----FLNHPHFHFVEGDISIHSEWIEYHVKKCDVVL  387 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSEE-EEEEESCCTTTGG----GTTCTTEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCCE-EEEEEcCchhhhh----hccCCceEEEECCCCCcHHHHHHhhcCCCEEE
Confidence            45789999999999999999999998 787 9999986543322    222357899999999853      45799999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCC-CC-CCCCCchHHHH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNV-NP-IGVRSCYDEGK  180 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~-~~-~~~~~~Y~~sK  180 (259)
                      |+||.........++...+++|+.++.+++++|.+.+.+|||+||..+|+.....+++|+++... .+ ..|.+.|+.+|
T Consensus       388 h~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK  467 (660)
T 1z7e_A          388 PLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSK  467 (660)
T ss_dssp             ECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHHHH
T ss_pred             ECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHHHH
Confidence            99997654334457788999999999999999998878999999999999876667777763210 11 24567899999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC------CCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHH
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI------DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKS  254 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~  254 (259)
                      .++|.+++.++.+.+++++++||+++|||+...      ....++..++..+..+.++.++++++..++|+|++|+|+++
T Consensus       468 ~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai  547 (660)
T 1z7e_A          468 QLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEAL  547 (660)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHH
Confidence            999999999988889999999999999998642      11346778888888888888888888899999999999999


Q ss_pred             Hhhh
Q 025022          255 CFLA  258 (259)
Q Consensus       255 ~~~l  258 (259)
                      +.++
T Consensus       548 ~~~l  551 (660)
T 1z7e_A          548 YRII  551 (660)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=100.00  E-value=1.2e-32  Score=224.33  Aligned_cols=193  Identities=20%  Similarity=0.133  Sum_probs=162.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~~a  105 (259)
                      |+|+|||||||||++++++|+ +|++ |++++|+.                ..+.+|+.+.+     +.  ++|+|||+|
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~-V~~~~r~~----------------~~~~~D~~d~~~~~~~~~~~~~d~vih~a   62 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGN-LIALDVHS----------------KEFCGDFSNPKGVAETVRKLRPDVIVNAA   62 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSE-EEEECTTC----------------SSSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCe-EEEecccc----------------ccccccCCCHHHHHHHHHhcCCCEEEECc
Confidence            689999999999999999999 8988 99998853                13567887765     33  499999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      |.........+++..+++|+.++.+++++|++.+++|||+||..+|+.....+.+|++     +..|.+.|+.+|.++|+
T Consensus        63 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~vy~~~~~~~~~E~~-----~~~p~~~Y~~sK~~~E~  137 (299)
T 1n2s_A           63 AHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETD-----ATSPLNVYGKTKLAGEK  137 (299)
T ss_dssp             CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTTS-----CCCCSSHHHHHHHHHHH
T ss_pred             ccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccEEeCCCCCCCCCCC-----CCCCccHHHHHHHHHHH
Confidence            9765433456788899999999999999999988899999999999987767788876     67788899999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +++.++    .+++++||+++|||+..    .++..++..+..+.++.+++  +..++|+|++|+|++++.++
T Consensus       138 ~~~~~~----~~~~ilRp~~v~G~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~  200 (299)
T 1n2s_A          138 ALQDNC----PKHLIFRTSWVYAGKGN----NFAKTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAI  200 (299)
T ss_dssp             HHHHHC----SSEEEEEECSEECSSSC----CHHHHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHH
T ss_pred             HHHHhC----CCeEEEeeeeecCCCcC----cHHHHHHHHHhcCCCEEeec--CcccCCeeHHHHHHHHHHHH
Confidence            987664    48999999999999743    37777888888888777765  47899999999999998765

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=100.00  E-value=5.6e-32  Score=223.69  Aligned_cols=206  Identities=23%  Similarity=0.340  Sum_probs=159.9

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCC--cC
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIE--VD   99 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~--~d   99 (259)
                      ...+++|+|+|||||||||++++++|+++|++ |++++|+.....+.+..   ..++.++.+|+++.+     +.+  +|
T Consensus        16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~D   91 (333)
T 2q1w_A           16 PRGSHMKKVFITGICGQIGSHIAELLLERGDK-VVGIDNFATGRREHLKD---HPNLTFVEGSIADHALVNQLIGDLQPD   91 (333)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCGGGSCC---CTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             eecCCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECCCccchhhHhh---cCCceEEEEeCCCHHHHHHHHhccCCc
Confidence            34456799999999999999999999999998 99999865433322222   147889999999876     344  99


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeec----CCCCCCCCCCCcCCCCCCCCC-
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG----DPLVHPQDESYWGNVNPIGVR-  173 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~----~~~~~~~~e~~~~~~~~~~~~-  173 (259)
                      +|||+||..... ...+++  +++|+.++.+++++|.+.++ +|||+||..+|+    .... +++|+.       .|. 
T Consensus        92 ~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~-------~p~~  160 (333)
T 2q1w_A           92 AVVHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR-------NPAN  160 (333)
T ss_dssp             EEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC-------CCTT
T ss_pred             EEEECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC-------CCCC
Confidence            999999976532 222333  89999999999999999988 999999999998    4433 666653       455 


Q ss_pred             CchHHHHHHHHHHHHH-HHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHH
Q 025022          174 SCYDEGKRVAETLMFD-YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~-~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      +.|+.+|.++|.+++. ++     +++++||+++|||+.   ...+++.++..+..+.  .+++ +...++|++++|+|+
T Consensus       161 ~~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~---~~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~  229 (333)
T 2q1w_A          161 SSYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRN---VSGPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLAR  229 (333)
T ss_dssp             CHHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTC---CSSHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHH
T ss_pred             CchHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCC---cCcHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHH
Confidence            7899999999999876 54     799999999999982   2347777777777665  3445 577899999999999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      ++++++
T Consensus       230 ai~~~~  235 (333)
T 2q1w_A          230 ATVRAV  235 (333)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=100.00  E-value=1.2e-32  Score=223.01  Aligned_cols=191  Identities=20%  Similarity=0.184  Sum_probs=153.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCC-cCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIE-VDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~-~d~vi~  103 (259)
                      |++|+|+||| +||||++|++.|+++|++ |++++|+....         ..+++++.+|+.+.+     +.+ +|+|||
T Consensus         1 M~~~~ilVtG-aG~iG~~l~~~L~~~g~~-V~~~~r~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih   69 (286)
T 3gpi_A            1 MSLSKILIAG-CGDLGLELARRLTAQGHE-VTGLRRSAQPM---------PAGVQTLIADVTRPDTLASIVHLRPEILVY   69 (286)
T ss_dssp             -CCCCEEEEC-CSHHHHHHHHHHHHTTCC-EEEEECTTSCC---------CTTCCEEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred             CCCCcEEEEC-CCHHHHHHHHHHHHCCCE-EEEEeCCcccc---------ccCCceEEccCCChHHHHHhhcCCCCEEEE
Confidence            5678999999 599999999999999998 99999865432         247889999999877     334 999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHH
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV  182 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~  182 (259)
                      +||..     ..+++..+++|+.++.+++++|++.++ +|||+||..+|+.....+++|++     +..|.+.|+.+|.+
T Consensus        70 ~a~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-----~~~p~~~Y~~sK~~  139 (286)
T 3gpi_A           70 CVAAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDT-----PPIAKDFSGKRMLE  139 (286)
T ss_dssp             CHHHH-----HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTTS-----CCCCCSHHHHHHHH
T ss_pred             eCCCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCCC-----CCCCCChhhHHHHH
Confidence            99853     235667788999999999999999887 99999999999988777888876     77888999999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       183 ~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +|.+ +.+     ++++++||+++|||+..        .++..+.. ..  ..+.++..++|+|++|+|++++.++
T Consensus       140 ~E~~-~~~-----~~~~ilR~~~v~G~~~~--------~~~~~~~~-~~--~~~~~~~~~~~i~v~Dva~~~~~~~  198 (286)
T 3gpi_A          140 AEAL-LAA-----YSSTILRFSGIYGPGRL--------RMIRQAQT-PE--QWPARNAWTNRIHRDDGAAFIAYLI  198 (286)
T ss_dssp             HHHH-GGG-----SSEEEEEECEEEBTTBC--------HHHHHTTC-GG--GSCSSBCEECEEEHHHHHHHHHHHH
T ss_pred             HHHH-Hhc-----CCeEEEecccccCCCch--------hHHHHHHh-cc--cCCCcCceeEEEEHHHHHHHHHHHH
Confidence            9998 543     89999999999999843        23344444 22  2367788999999999999998775

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.98  E-value=1.3e-31  Score=222.24  Aligned_cols=203  Identities=22%  Similarity=0.278  Sum_probs=165.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~  103 (259)
                      +++|+|+||||||+||++++++|+++ |+..|++++|+..... .+...+...++.++.+|+.+.+     +.++|+|||
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih   97 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQS-EMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH   97 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHH-HHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHH-HHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            56799999999999999999999999 9833999998543222 2222223358999999999977     678999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHH
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV  182 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~  182 (259)
                      +||.........++...+++|+.++.+++++|.+.++ +||++||..++                   .|.+.|+.+|.+
T Consensus        98 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~-------------------~p~~~Y~~sK~~  158 (344)
T 2gn4_A           98 AAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA-------------------NPINLYGATKLC  158 (344)
T ss_dssp             CCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS-------------------SCCSHHHHHHHH
T ss_pred             CCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC-------------------CCccHHHHHHHH
Confidence            9997653333456788999999999999999999998 99999996543                   234789999999


Q ss_pred             HHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCC-CeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          183 AETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGE-PLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       183 ~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +|.+++.++.+   .+++++++||+++|||+.     ..++.+...+..+. ++.+. ++...++|+|++|+|++++.++
T Consensus       159 ~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~-----~~i~~~~~~~~~g~~~~~i~-~~~~~r~~i~v~D~a~~v~~~l  232 (344)
T 2gn4_A          159 SDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG-----SVVPFFKKLVQNKASEIPIT-DIRMTRFWITLDEGVSFVLKSL  232 (344)
T ss_dssp             HHHHHHHGGGCCCSSCCEEEEECCCEETTCTT-----SHHHHHHHHHHHTCCCEEES-CTTCEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcEEEEEEeccEECCCC-----CHHHHHHHHHHcCCCceEEe-CCCeEEeeEEHHHHHHHHHHHH
Confidence            99999888753   579999999999999872     37788888888887 77764 6678899999999999998765

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.98  E-value=2.7e-31  Score=215.63  Aligned_cols=191  Identities=23%  Similarity=0.239  Sum_probs=158.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYH  103 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~  103 (259)
                      ..|+|+|||||||||++++++|+++|++ |++++|+                    .+|+++.+     +.  ++|+|||
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~--------------------~~Dl~d~~~~~~~~~~~~~d~vih   69 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVE-VIPTDVQ--------------------DLDITNVLAVNKFFNEKKPNVVIN   69 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEE-EEEECTT--------------------TCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCe-EEeccCc--------------------cCCCCCHHHHHHHHHhcCCCEEEE
Confidence            4589999999999999999999999998 9999884                    25666554     33  7999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHH
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA  183 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~  183 (259)
                      +||.........++...+++|+.++.+++++|++.+++|||+||..+|+.....+++|+.     +..|.+.|+.+|.++
T Consensus        70 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~~v~~~~~~~~~~E~~-----~~~~~~~Y~~sK~~~  144 (292)
T 1vl0_A           70 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEFD-----EVNPQSAYGKTKLEG  144 (292)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTTS-----CCCCCSHHHHHHHHH
T ss_pred             CCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEechHHeECCCCCCCCCCCC-----CCCCccHHHHHHHHH
Confidence            999765433446788899999999999999999988899999999999977667788876     667788999999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       184 e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |.+++.++    .+++++||+++|||+     ..++..++.....+.++.+.+  +..++|+|++|+|++++.++
T Consensus       145 E~~~~~~~----~~~~~lR~~~v~G~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~  208 (292)
T 1vl0_A          145 ENFVKALN----PKYYIVRTAWLYGDG-----NNFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVI  208 (292)
T ss_dssp             HHHHHHHC----SSEEEEEECSEESSS-----SCHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHH
T ss_pred             HHHHHhhC----CCeEEEeeeeeeCCC-----cChHHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHH
Confidence            99987653    469999999999982     136777777777777776665  46889999999999998765

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.98  E-value=1.5e-31  Score=230.95  Aligned_cols=225  Identities=18%  Similarity=0.147  Sum_probs=168.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhc---CCCeEEEEcCCCCCCc--chhhhccC--------------CCceeEeecc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMEN---EKNEVIVVDNYFTGSK--DNLRKWIG--------------HPRFELIRHD   89 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~---g~~~V~~~~r~~~~~~--~~~~~~~~--------------~~~~~~~~~d   89 (259)
                      ..++|+|+|||||||||++|+++|+++   |++ |+++.|+.....  ..+...+.              ..++.++.+|
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~-V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D  148 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGR-LICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD  148 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCE-EEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCE-EEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence            346899999999999999999999999   888 999998754321  11212221              2589999999


Q ss_pred             cCccc-----------cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCC
Q 025022           90 VTEPL-----------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVH  157 (259)
Q Consensus        90 l~~~~-----------~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~  157 (259)
                      +++..           +.++|+|||+||....    .++...+++|+.++.+++++|.+.++ +|||+||.++|+.....
T Consensus       149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~  224 (478)
T 4dqv_A          149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPS  224 (478)
T ss_dssp             TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTT
T ss_pred             CCCcccCCCHHHHHHHHcCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCC
Confidence            98543           4579999999997653    55667889999999999999999988 99999999999987777


Q ss_pred             CCCCCCcCCC-CC-----CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC---CCccHHHHHHHHHHc
Q 025022          158 PQDESYWGNV-NP-----IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI---DDGRVVSNFIAQAIR  228 (259)
Q Consensus       158 ~~~e~~~~~~-~~-----~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~---~~~~~~~~~~~~~~~  228 (259)
                      +++|+..... .+     ....+.|+.+|.++|.+++.++.+.+++++++||+++||++...   ....++..++.....
T Consensus       225 ~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~  304 (478)
T 4dqv_A          225 AFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMA  304 (478)
T ss_dssp             TCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHH
T ss_pred             CcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHH
Confidence            7777652100 00     11125599999999999999988889999999999999986411   123466666665544


Q ss_pred             CCCeEE--ec---C---CceeeeeeeHHHHHHHHHhhh
Q 025022          229 GEPLTV--QA---P---GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       229 ~~~~~~--~~---~---~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....+.  .+   +   ++..++|+|++|+|++++.++
T Consensus       305 ~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~  342 (478)
T 4dqv_A          305 TGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLG  342 (478)
T ss_dssp             HCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHH
T ss_pred             cCcccccccccccccccccceeeeeeHHHHHHHHHHHH
Confidence            332221  11   1   256789999999999998764

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.97  E-value=4.9e-31  Score=211.50  Aligned_cols=163  Identities=23%  Similarity=0.274  Sum_probs=140.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      |++|+|+||||+|+||+++++.|+++|++ |++++|+.....        ..++.++.+|+++.+     +.++|+|||+
T Consensus         1 m~~k~vlVTGasg~IG~~la~~L~~~G~~-V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            1 MAMKRLLVTGAAGQLGRVMRERLAPMAEI-LRLADLSPLDPA--------GPNEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             CCEEEEEEESTTSHHHHHHHHHTGGGEEE-EEEEESSCCCCC--------CTTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCE-EEEEecCCcccc--------CCCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            45689999999999999999999999998 999998654332        347899999999987     6789999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCC-CCCCCCCCCcCCCCCCCCCCchHHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPIGVRSCYDEGKRV  182 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~-~~~~~~e~~~~~~~~~~~~~~Y~~sK~~  182 (259)
                      ||..    ...+++..+++|+.++.++++++++.+. +||++||..+|+.. ...+++|+.     +..+.+.|+.+|.+
T Consensus        72 Ag~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~~-----~~~~~~~Y~~sK~~  142 (267)
T 3rft_A           72 GGIS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDV-----PARPDGLYGVSKCF  142 (267)
T ss_dssp             CSCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTTS-----CCCCCSHHHHHHHH
T ss_pred             CCCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCCC-----CCCCCChHHHHHHH
Confidence            9974    2456788999999999999999999988 99999999998743 345666665     77788999999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEeccccCCC
Q 025022          183 AETLMFDYHRQHGIEIRIARIFNTYGPR  210 (259)
Q Consensus       183 ~e~~~~~~~~~~~~~~~~lr~~~v~g~~  210 (259)
                      .|.+++.++.+++++++++||+.++|+.
T Consensus       143 ~e~~~~~~a~~~g~~~~~vr~~~v~~~~  170 (267)
T 3rft_A          143 GENLARMYFDKFGQETALVRIGSCTPEP  170 (267)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECBCSSSC
T ss_pred             HHHHHHHHHHHhCCeEEEEEeecccCCC
Confidence            9999999998899999999999999863

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.97  E-value=2.4e-31  Score=218.17  Aligned_cols=200  Identities=20%  Similarity=0.227  Sum_probs=137.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEEEc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHL  104 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~~  104 (259)
                      +|+|+|||||||||++++++|+++|++ |++++|+...           .+  ++.+|+++.+     +.  ++|+|||+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~-----------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~   67 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWH-AVGCGFRRAR-----------PK--FEQVNLLDSNAVHHIIHDFQPHVIVHC   67 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEC-------------------------------CHHHHHHHCCSEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCe-EEEEccCCCC-----------CC--eEEecCCCHHHHHHHHHhhCCCEEEEC
Confidence            579999999999999999999999998 9999875332           12  6778888766     23  58999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE  184 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e  184 (259)
                      ||.........+++..+++|+.++.+++++|.+.+++|||+||..+|+. ...+++|++     +..|.+.|+.+|.+.|
T Consensus        68 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~~~-~~~~~~E~~-----~~~~~~~Y~~sK~~~e  141 (315)
T 2ydy_A           68 AAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDG-TNPPYREED-----IPAPLNLYGKTKLDGE  141 (315)
T ss_dssp             C-------------------CHHHHHHHHHHHHHTCEEEEEEEGGGSCS-SSCSBCTTS-----CCCCCSHHHHHHHHHH
T ss_pred             CcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHHHcCC-CCCCCCCCC-----CCCCcCHHHHHHHHHH
Confidence            9976543345667889999999999999999998889999999999987 556777775     6677889999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHH-cCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI-RGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       185 ~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+++.+    +++++++||+++|||...+. ..++..++.... .+.++.+.+  +..++|+|++|+|++++.++
T Consensus       142 ~~~~~~----~~~~~~lR~~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~a~~~~~  209 (315)
T 2ydy_A          142 KAVLEN----NLGAAVLRIPILYGEVEKLE-ESAVTVMFDKVQFSNKSANMDH--WQQRFPTHVKDVATVCRQLA  209 (315)
T ss_dssp             HHHHHH----CTTCEEEEECSEECSCSSGG-GSTTGGGHHHHHCCSSCEEEEC--SSBBCCEEHHHHHHHHHHHH
T ss_pred             HHHHHh----CCCeEEEeeeeeeCCCCccc-ccHHHHHHHHHHhcCCCeeecc--CceECcEEHHHHHHHHHHHH
Confidence            998665    56789999999999985421 124455566666 676666543  56789999999999998764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.97  E-value=4e-31  Score=214.06  Aligned_cols=190  Identities=18%  Similarity=0.115  Sum_probs=152.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~  110 (259)
                      ++|+|+|||+ ||||++|+++|+++|++ |++++|+..... .+.    ..+++++.+|+.+.++.++|+|||+|+....
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~-~~~----~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~   76 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQGWR-IIGTSRNPDQME-AIR----ASGAEPLLWPGEEPSLDGVTHLLISTAPDSG   76 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGGTCE-EEEEESCGGGHH-HHH----HTTEEEEESSSSCCCCTTCCEEEECCCCBTT
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHCCCE-EEEEEcChhhhh-hHh----hCCCeEEEecccccccCCCCEEEECCCcccc
Confidence            3589999998 99999999999999998 999998643321 121    2478999999988767889999999986542


Q ss_pred             cccccChhHHHHHhhhhHHHHHHHHHH--hCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHH
Q 025022          111 IFYKYNPVKTIKTNVIGTLNMLGLAKR--VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLM  187 (259)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~  187 (259)
                      .             ...+.++++++++  .++ +|||+||..+|+.....+++|++     +..|.+.|+.+|..+|+++
T Consensus        77 ~-------------~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~-----~~~p~~~Y~~sK~~~E~~~  138 (286)
T 3ius_A           77 G-------------DPVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETT-----PLTPTAARGRWRVMAEQQW  138 (286)
T ss_dssp             B-------------CHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTS-----CCCCCSHHHHHHHHHHHHH
T ss_pred             c-------------cHHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCC-----CCCCCCHHHHHHHHHHHHH
Confidence            1             1124678899988  666 99999999999987777888887     7788899999999999998


Q ss_pred             HHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          188 FDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       188 ~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +.+   .+++++++||+++|||+...         +..+..+....+.+. ...++|+|++|+|++++.++
T Consensus       139 ~~~---~~~~~~ilRp~~v~G~~~~~---------~~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~  196 (286)
T 3ius_A          139 QAV---PNLPLHVFRLAGIYGPGRGP---------FSKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASM  196 (286)
T ss_dssp             HHS---TTCCEEEEEECEEEBTTBSS---------STTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHH
T ss_pred             Hhh---cCCCEEEEeccceECCCchH---------HHHHhcCCccccCCC-CcccceEEHHHHHHHHHHHH
Confidence            776   58999999999999998543         123445666666554 57889999999999998875

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.97  E-value=9.1e-31  Score=236.07  Aligned_cols=223  Identities=25%  Similarity=0.399  Sum_probs=169.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc--cCCCceeEeecccCccc-----cC--CcCE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL-----LI--EVDQ  100 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~dl~~~~-----~~--~~d~  100 (259)
                      +++|+|+||||+||||++|+++|+++|++ |++++|+...........  ....++.++.+|+.+.+     +.  ++|+
T Consensus         9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~   87 (699)
T 1z45_A            9 STSKIVLVTGGAGYIGSHTVVELIENGYD-CVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDS   87 (699)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCE
Confidence            56789999999999999999999999998 999988654432222111  11347889999999876     33  7999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCC----CCCCCCCCcCCCCCCCCCCc
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL----VHPQDESYWGNVNPIGVRSC  175 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~----~~~~~e~~~~~~~~~~~~~~  175 (259)
                      |||+||..........+...+++|+.++.+++++|++.++ +||++||..+|+...    ..+.+|+.     +..|.+.
T Consensus        88 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~-----~~~p~~~  162 (699)
T 1z45_A           88 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC-----PLGPTNP  162 (699)
T ss_dssp             EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTS-----CCCCCSH
T ss_pred             EEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccC-----CCCCCCh
Confidence            9999997653323445677899999999999999999988 999999999998532    24556654     6667789


Q ss_pred             hHHHHHHHHHHHHHHHHH--hCCcEEEEEeccccCCCCCC----C----CccHHHHHHHHHHc-CCCeEEec------CC
Q 025022          176 YDEGKRVAETLMFDYHRQ--HGIEIRIARIFNTYGPRMNI----D----DGRVVSNFIAQAIR-GEPLTVQA------PG  238 (259)
Q Consensus       176 Y~~sK~~~e~~~~~~~~~--~~~~~~~lr~~~v~g~~~~~----~----~~~~~~~~~~~~~~-~~~~~~~~------~~  238 (259)
                      |+.+|.++|++++.++.+  .+++++++||+++|||+...    .    ...++..+...... +.++.+++      ++
T Consensus       163 Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  242 (699)
T 1z45_A          163 YGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDG  242 (699)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCS
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCC
Confidence            999999999999998876  68999999999999986321    0    12355544444332 34566665      57


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +..++|||++|+|++++.++
T Consensus       243 ~~~~~~i~v~Dva~a~~~a~  262 (699)
T 1z45_A          243 TPIRDYIHVVDLAKGHIAAL  262 (699)
T ss_dssp             SCEECEEEHHHHHHHHHHHH
T ss_pred             CeeEeeEEHHHHHHHHHHHH
Confidence            78899999999999988764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=1.2e-31  Score=210.06  Aligned_cols=196  Identities=14%  Similarity=0.060  Sum_probs=151.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~  106 (259)
                      +|+|+||||||+||++++++|+++|++ |++++|+.......      ..+++++.+|+++.+     +.++|+|||+||
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   76 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFE-VTAVVRHPEKIKIE------NEHLKVKKADVSSLDEVCEVCKGADAVISAFN   76 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCE-EEEECSCGGGCCCC------CTTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCE-EEEEEcCcccchhc------cCceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence            589999999999999999999999998 99999975433211      158999999999887     678999999998


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      ....      ....+++|+.++.+++++|++.++ +|||+||..+|....... .|+.     +..|.+.|+.+|...|.
T Consensus        77 ~~~~------~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-~~~~-----~~~p~~~Y~~sK~~~e~  144 (227)
T 3dhn_A           77 PGWN------NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLR-LMDS-----GEVPENILPGVKALGEF  144 (227)
T ss_dssp             C------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEE-GGGT-----TCSCGGGHHHHHHHHHH
T ss_pred             CCCC------ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCc-cccC-----CcchHHHHHHHHHHHHH
Confidence            6521      123678899999999999999998 999999998765433222 2222     66678899999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +++.++++.+++++++||+++|||+.....  +        ..+....+.. ++. ++|+|++|+|++++.++
T Consensus       145 ~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~--~--------~~~~~~~~~~-~~~-~~~i~~~Dva~ai~~~l  205 (227)
T 3dhn_A          145 YLNFLMKEKEIDWVFFSPAADMRPGVRTGR--Y--------RLGKDDMIVD-IVG-NSHISVEDYAAAMIDEL  205 (227)
T ss_dssp             HHHTGGGCCSSEEEEEECCSEEESCCCCCC--C--------EEESSBCCCC-TTS-CCEEEHHHHHHHHHHHH
T ss_pred             HHHHHhhccCccEEEEeCCcccCCCccccc--e--------eecCCCcccC-CCC-CcEEeHHHHHHHHHHHH
Confidence            999888778999999999999999854321  1        1222222222 222 89999999999998875

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.97  E-value=1.1e-31  Score=222.29  Aligned_cols=222  Identities=22%  Similarity=0.295  Sum_probs=152.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc--chhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      +|+||||||+||||++|+++|+++|++ |+++.|+.....  ..+.......+++++.+|+++.+     +.++|+|||+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~   87 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYA-VNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHV   87 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCE-EEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence            689999999999999999999999998 888877643321  11111111246889999999876     5689999999


Q ss_pred             cCCCCccccccCh-hHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecce-eecCC---CCCCCCCCCcCCCCC---CCC-C
Q 025022          105 ACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSE-VYGDP---LVHPQDESYWGNVNP---IGV-R  173 (259)
Q Consensus       105 a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~-~~~~~---~~~~~~e~~~~~~~~---~~~-~  173 (259)
                      |+....  ...++ .+.+++|+.++.+++++|.+.+ + +|||+||.. +|+..   ...+++|+.|...+.   ..+ .
T Consensus        88 A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (338)
T 2rh8_A           88 ATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPT  165 (338)
T ss_dssp             SSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCC
T ss_pred             CCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCcc
Confidence            986532  22233 3478999999999999999986 6 999999987 44321   113677876554322   122 2


Q ss_pred             CchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC------CceeeeeeeH
Q 025022          174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP------GTQTRSFCYV  247 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~v  247 (259)
                      ..|+.+|.++|.+++.++++++++++++||+++|||+........+..+. ....+... .++.      +...++|+|+
T Consensus       166 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~i~v  243 (338)
T 2rh8_A          166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAM-SLITGNEF-LINGMKGMQMLSGSVSIAHV  243 (338)
T ss_dssp             CCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHH-HHHHTCHH-HHHHHHHHHHHHSSEEEEEH
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCcc-ccccccccccccCcccEEEH
Confidence            26999999999999998877899999999999999986543222222222 22333322 1111      1123489999


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|+|+++++++
T Consensus       244 ~Dva~a~~~~~  254 (338)
T 2rh8_A          244 EDVCRAHIFVA  254 (338)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.97  E-value=1e-30  Score=215.02  Aligned_cols=220  Identities=21%  Similarity=0.285  Sum_probs=150.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC-CCCC--CcchhhhccC-CCceeEeecccCccc-----cCCcCEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTG--SKDNLRKWIG-HPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~--~~~~~~~~~~-~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      +|+|||||||||||++++++|+++|++ |+++.| +...  ....+..... ..+++++.+|+++.+     +.++|+||
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   79 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYS-VNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF   79 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCE-EEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence            479999999999999999999999998 888887 4321  1111111100 125788999999876     56899999


Q ss_pred             EccCCCCccccccC-hhHHHHHhhhhHHHHHHHHHHh-CC-eEEEEecceee-cCCC-CCCCCCCCcCCCC---CCCCCC
Q 025022          103 HLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY-GDPL-VHPQDESYWGNVN---PIGVRS  174 (259)
Q Consensus       103 ~~a~~~~~~~~~~~-~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~~Ss~~~~-~~~~-~~~~~e~~~~~~~---~~~~~~  174 (259)
                      |+|+...  ....+ .+..+++|+.++.+++++|.+. ++ +|||+||..++ +... ..+.+|+.|...+   +..|..
T Consensus        80 h~A~~~~--~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~  157 (322)
T 2p4h_X           80 HTASPID--FAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFG  157 (322)
T ss_dssp             ECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred             EcCCccc--CCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCccc
Confidence            9997542  22222 3458899999999999999987 66 99999998754 3221 2345665432211   112222


Q ss_pred             -chHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHH
Q 025022          175 -CYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCK  253 (259)
Q Consensus       175 -~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  253 (259)
                       .|+.+|.++|.+++.+++.++++++++||+++|||.........+..+. ....+....+ +.  ..++|+|++|+|++
T Consensus       158 ~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~-~~~~g~~~~~-~~--~~~~~i~v~Dva~a  233 (322)
T 2p4h_X          158 WNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKAL-VLVLGKKEQI-GV--TRFHMVHVDDVARA  233 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHT-HHHHSCGGGC-CE--EEEEEEEHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHH-HHHhCCCccC-cC--CCcCEEEHHHHHHH
Confidence             6999999999999998887899999999999999975432222222221 2233433222 22  33489999999999


Q ss_pred             HHhhh
Q 025022          254 SCFLA  258 (259)
Q Consensus       254 ~~~~l  258 (259)
                      +++++
T Consensus       234 ~~~~~  238 (322)
T 2p4h_X          234 HIYLL  238 (322)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.97  E-value=1.7e-30  Score=221.81  Aligned_cols=220  Identities=20%  Similarity=0.181  Sum_probs=164.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc--chhh----hc-------cCCCceeEeecccCccc-
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLR----KW-------IGHPRFELIRHDVTEPL-   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~----~~-------~~~~~~~~~~~dl~~~~-   94 (259)
                      .+.+|+||||||||+||++|+++|++.|++ |+++.|+.....  ..+.    ..       ....++.++.+|+.+.+ 
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSHR-IYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEEE-EEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCCE-EEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            345689999999999999999999999998 999998755211  1111    10       01258999999999855 


Q ss_pred             ---cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecC-----CCCCCCCCCCcC
Q 025022           95 ---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD-----PLVHPQDESYWG  165 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~-----~~~~~~~e~~~~  165 (259)
                         ..++|+|||+||...   ...++...+++|+.++.+++++|.+ ++ +|||+||..+ |.     ....+++|+++.
T Consensus       145 l~~~~~~d~Vih~A~~~~---~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~  219 (427)
T 4f6c_A          145 VVLPENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVY  219 (427)
T ss_dssp             CCCSSCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGG-GSEECSSCSCCEECTTCSC
T ss_pred             CCCcCCCCEEEECCcccC---CCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHh-CCCccCCCCCccccccccc
Confidence               468999999999764   2356778899999999999999999 55 9999999988 43     234566676532


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-----ccHHHHHHHHHHcCCCeEEecCCce
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-----GRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                      .  +..+.+.|+.+|+++|.+++.+++ .+++++++||+++|||......     ...+..++.....+..++. +.++.
T Consensus       220 ~--~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  295 (427)
T 4f6c_A          220 K--GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEM  295 (427)
T ss_dssp             S--SCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH-HHHTC
T ss_pred             c--CCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC-ccccc
Confidence            1  245778999999999999999754 6899999999999999865421     1357778888777776654 44578


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      .++|++++|+|++++.++
T Consensus       296 ~~~~v~v~DvA~ai~~~~  313 (427)
T 4f6c_A          296 PVDFSFVDTTARQIVALA  313 (427)
T ss_dssp             EECCEEHHHHHHHHHHHT
T ss_pred             eEEEeeHHHHHHHHHHHH
Confidence            899999999999998875

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.97  E-value=6.3e-30  Score=201.40  Aligned_cols=188  Identities=16%  Similarity=0.203  Sum_probs=145.1

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCce-eEeecccCccc----cCCcCE
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRF-ELIRHDVTEPL----LIEVDQ  100 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~dl~~~~----~~~~d~  100 (259)
                      ....+++|+|+||||||+||++++++|+++|++ |++++|+...... +.    ..++ +++.+|++ ..    +.++|+
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~-V~~~~R~~~~~~~-~~----~~~~~~~~~~Dl~-~~~~~~~~~~D~   87 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHE-PVAMVRNEEQGPE-LR----ERGASDIVVANLE-EDFSHAFASIDA   87 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSGGGHHH-HH----HTTCSEEEECCTT-SCCGGGGTTCSE
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCCe-EEEEECChHHHHH-HH----hCCCceEEEcccH-HHHHHHHcCCCE
Confidence            445578999999999999999999999999998 9999986543221 11    1367 89999998 33    778999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHH
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      |||+||...    ..+++..+++|+.++.+++++|++.++ +||++||...+..       +..     + .+...|+.+
T Consensus        88 vi~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------~~~-----~-~~~~~Y~~s  150 (236)
T 3e8x_A           88 VVFAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-------DQG-----P-MNMRHYLVA  150 (236)
T ss_dssp             EEECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-------GGS-----C-GGGHHHHHH
T ss_pred             EEECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-------CCC-----h-hhhhhHHHH
Confidence            999999754    356788999999999999999999988 9999999543321       111     2 456789999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |.+.|.+++    ..+++++++||++++|+...                 ..+.....+...+++++++|+|+++++++
T Consensus       151 K~~~e~~~~----~~gi~~~~lrpg~v~~~~~~-----------------~~~~~~~~~~~~~~~i~~~Dva~~~~~~~  208 (236)
T 3e8x_A          151 KRLADDELK----RSSLDYTIVRPGPLSNEEST-----------------GKVTVSPHFSEITRSITRHDVAKVIAELV  208 (236)
T ss_dssp             HHHHHHHHH----HSSSEEEEEEECSEECSCCC-----------------SEEEEESSCSCCCCCEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHH----HCCCCEEEEeCCcccCCCCC-----------------CeEEeccCCCcccCcEeHHHHHHHHHHHh
Confidence            999999874    67999999999999998632                 11333344555689999999999999876

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.97  E-value=9.3e-30  Score=210.67  Aligned_cols=221  Identities=21%  Similarity=0.297  Sum_probs=153.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc--cC--CCceeEeecccCccc-----cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IG--HPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~--~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      ++++||||||+||||++|+++|+++|++ |+++.|+..... .....  +.  ..+++++.+|+++.+     +.++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYT-VRATVRDPTNVK-KVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCTTCHH-HHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCE-EEEEECCcchhH-HHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            4689999999999999999999999998 988887643211 11111  11  125788999999876     5689999


Q ss_pred             EEccCCCCccccccCh-hHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecce-eecCCC-CCCCCCCCcCCCCC----CCC
Q 025022          102 YHLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSE-VYGDPL-VHPQDESYWGNVNP----IGV  172 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~-~~~~~~-~~~~~e~~~~~~~~----~~~  172 (259)
                      ||+|+...  ....++ ...+++|+.++.+++++|.+.+ + +|||+||.. +|+... ..+.+|+.|...+.    ..+
T Consensus        82 ih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  159 (337)
T 2c29_D           82 FHVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMT  159 (337)
T ss_dssp             EECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCT
T ss_pred             EEeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCc
Confidence            99998652  222333 3588999999999999999987 6 999999987 444322 23456665322110    124


Q ss_pred             CCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHH
Q 025022          173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      .+.|+.+|.++|.+++.+++.++++++++||+++|||+........+.... ....+... .++.+ ....|+|++|+|+
T Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~-~~~~g~~~-~~~~~-~~~~~i~v~Dva~  236 (337)
T 2c29_D          160 AWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITAL-SPITGNEA-HYSII-RQGQFVHLDDLCN  236 (337)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHT-HHHHTCGG-GHHHH-TEEEEEEHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCCc-ccccc-CCCCEEEHHHHHH
Confidence            457999999999999998877899999999999999985432211111111 11233322 12221 2345999999999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      ++++++
T Consensus       237 a~~~~~  242 (337)
T 2c29_D          237 AHIYLF  242 (337)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.97  E-value=9.7e-30  Score=207.13  Aligned_cols=199  Identities=17%  Similarity=0.127  Sum_probs=152.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCcc-
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI-  111 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~~-  111 (259)
                      |||||||||||||++|+++|+++|++ |+++.|++...           .+.+.  ++....+.++|+|||+|+..... 
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~-V~~l~R~~~~~-----------~~~~~--~~~~~~l~~~d~vihla~~~i~~~   66 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHE-VTLVSRKPGPG-----------RITWD--ELAASGLPSCDAAVNLAGENILNP   66 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCTT-----------EEEHH--HHHHHCCCSCSEEEECCCCCSSCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCCcC-----------eeecc--hhhHhhccCCCEEEEeccCcccch
Confidence            79999999999999999999999999 99999864321           11111  11122267899999999854321 


Q ss_pred             ---ccccChhHHHHHhhhhHHHHHHHHHHhCC---eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          112 ---FYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       112 ---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                         .........++.|+.++.+++++++..+.   ++|++||..+|+.....+.+|++     +..+...|+..+...|.
T Consensus        67 ~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~-----p~~~~~~~~~~~~~~e~  141 (298)
T 4b4o_A           67 LRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDS-----PGGDFDFFSNLVTKWEA  141 (298)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTC-----CCSCSSHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccC-----CccccchhHHHHHHHHH
Confidence               11233456788999999999999998876   68999999999998888888886     77777778877777665


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ..  .....+++++++|++++|||+.     ..+..+......+.. ..++++++.++|||++|+|+++..++
T Consensus       142 ~~--~~~~~~~~~~~~r~~~v~g~~~-----~~~~~~~~~~~~~~~-~~~g~g~~~~~~ihv~Dva~a~~~~~  206 (298)
T 4b4o_A          142 AA--RLPGDSTRQVVVRSGVVLGRGG-----GAMGHMLLPFRLGLG-GPIGSGHQFFPWIHIGDLAGILTHAL  206 (298)
T ss_dssp             HH--CCSSSSSEEEEEEECEEECTTS-----HHHHHHHHHHHTTCC-CCBTTSCSBCCEEEHHHHHHHHHHHH
T ss_pred             HH--HhhccCCceeeeeeeeEEcCCC-----CchhHHHHHHhcCCc-ceecccCceeecCcHHHHHHHHHHHH
Confidence            42  2345689999999999999973     356666666666654 44589999999999999999998765

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.97  E-value=6.1e-30  Score=222.76  Aligned_cols=219  Identities=21%  Similarity=0.185  Sum_probs=164.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc--chh----hhc-------cCCCceeEeecccCccc---
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNL----RKW-------IGHPRFELIRHDVTEPL---   94 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~----~~~-------~~~~~~~~~~~dl~~~~---   94 (259)
                      .+|+|+|||||||||++|+++|++.|++ |+++.|+.....  ..+    +..       ....++.++.+|+.+.+   
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~-V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~  227 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHR-IYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV  227 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEE-EEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCE-EEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence            4589999999999999999999888998 999998755211  011    100       11358999999999954   


Q ss_pred             -cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecC-----CCCCCCCCCCcCCCC
Q 025022           95 -LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD-----PLVHPQDESYWGNVN  168 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~-----~~~~~~~e~~~~~~~  168 (259)
                       ..++|+|||+||...   ...++...+++|+.++.+++++|++.+.+|||+||.++ |.     ....+++|+++..  
T Consensus       228 ~~~~~D~Vih~Aa~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~--  301 (508)
T 4f6l_B          228 LPENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVYK--  301 (508)
T ss_dssp             CSSCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHTTTCEEEEEEESCT-TSEECTTCSCCEECTTCSCS--
T ss_pred             CccCCCEEEECCceec---CCCCHHHHhhhHHHHHHHHHHHHHhCCCcEEEeCChhh-ccCCccCCcCcccccccccc--
Confidence             468999999999764   24466778899999999999999994349999999988 43     2345666665321  


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-----CccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID-----DGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                      +..+.+.|+.+|+.+|++++.+++ .+++++++||+++||++....     ....+..++........++. +.++..++
T Consensus       302 ~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~g~~~~~  379 (508)
T 4f6l_B          302 GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVD  379 (508)
T ss_dssp             SBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET-TGGGSEEE
T ss_pred             cccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC-CccCceEE
Confidence            234778999999999999999754 699999999999999986542     12356777777777665554 44678999


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      |++++|+|++++.++
T Consensus       380 ~v~v~DvA~ai~~~~  394 (508)
T 4f6l_B          380 FSFVDTTARQIVALA  394 (508)
T ss_dssp             CEEHHHHHHHHHHHT
T ss_pred             EEcHHHHHHHHHHHH
Confidence            999999999999875

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.97  E-value=1.4e-29  Score=220.62  Aligned_cols=200  Identities=18%  Similarity=0.094  Sum_probs=154.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---cCCcCEEEEccCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---LIEVDQIYHLACPA  108 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---~~~~d~vi~~a~~~  108 (259)
                      +|+|||||||||||++|++.|+++|++ |++++|+.....             .+.+|+.+..   +.++|+|||+||..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~-V~~l~R~~~~~~-------------~v~~d~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHE-VIQLVRKEPKPG-------------KRFWDPLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSSCCTT-------------CEECCTTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCCCcc-------------ceeecccchhHHhcCCCCEEEECCCCc
Confidence            789999999999999999999999998 999998754321             1445554433   67899999999976


Q ss_pred             Ccc-ccccChhHHHHHhhhhHHHHHHH-HHHhCC-eEEEEecceeec-CCCCCCCCCCCcCCCCCCCCCCchHHHHHHHH
Q 025022          109 SPI-FYKYNPVKTIKTNVIGTLNMLGL-AKRVGA-RILLTSTSEVYG-DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE  184 (259)
Q Consensus       109 ~~~-~~~~~~~~~~~~n~~~~~~l~~~-~~~~~~-~~i~~Ss~~~~~-~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e  184 (259)
                      ... .........+++|+.++.+++++ +++.++ +|||+||.++|+ .....+++|++     +. +.+.|+.+|...|
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~-----~~-~~~~y~~~~~~~E  286 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEES-----ES-GDDFLAEVCRDWE  286 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTS-----CC-CSSHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCC-----CC-CcChHHHHHHHHH
Confidence            432 23445678899999999999999 566666 999999999998 44455677765     33 6788999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       185 ~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .++... ...+++++++||+++|||+.     ..+..+...+..+.. ..+++++..++|+|++|+|++++.++
T Consensus       287 ~~~~~~-~~~gi~~~ilRp~~v~Gp~~-----~~~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l  353 (516)
T 3oh8_A          287 HATAPA-SDAGKRVAFIRTGVALSGRG-----GMLPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAI  353 (516)
T ss_dssp             HTTHHH-HHTTCEEEEEEECEEEBTTB-----SHHHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHH
T ss_pred             HHHHHH-HhCCCCEEEEEeeEEECCCC-----ChHHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHH
Confidence            876544 56799999999999999973     366666665555543 35688889999999999999998875

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.97  E-value=1.1e-29  Score=203.73  Aligned_cols=184  Identities=23%  Similarity=0.250  Sum_probs=152.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~  106 (259)
                      +|+|+||||||+||++++++|+++|++ |++++|+.....        ..++.++.+|+++.+     +.++|+|||+||
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   72 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHE-VRLSDIVDLGAA--------EAHEEIVACDLADAQAVHDLVKDCDGIIHLGG   72 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEE-EEECCSSCCCCC--------CTTEEECCCCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCE-EEEEeCCCcccc--------CCCccEEEccCCCHHHHHHHHcCCCEEEECCc
Confidence            468999999999999999999999988 999998654321        136789999999876     678999999998


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCC-CCCCCCCCcCCCCCCCCCCchHHHHHHHH
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-VHPQDESYWGNVNPIGVRSCYDEGKRVAE  184 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~-~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e  184 (259)
                      ...    ..+....+++|+.++.++++++.+.++ +|||+||..+|+... ..+++|+.     +..|.+.|+.+|...|
T Consensus        73 ~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~~-----~~~~~~~Y~~sK~~~e  143 (267)
T 3ay3_A           73 VSV----ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEV-----PRRPDSLYGLSKCFGE  143 (267)
T ss_dssp             CCS----CCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTTS-----CCCCCSHHHHHHHHHH
T ss_pred             CCC----CCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCCC-----CCCCCChHHHHHHHHH
Confidence            752    345678899999999999999999888 999999999998643 45677775     6777889999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       185 ~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+++.+..+++++++++||+++|+..   .                      .+...++|++++|+|++++.++
T Consensus       144 ~~~~~~~~~~gi~~~~lrp~~v~~~~---~----------------------~~~~~~~~~~~~dva~~~~~~~  192 (267)
T 3ay3_A          144 DLASLYYHKFDIETLNIRIGSCFPKP---K----------------------DARMMATWLSVDDFMRLMKRAF  192 (267)
T ss_dssp             HHHHHHHHTTCCCEEEEEECBCSSSC---C----------------------SHHHHHHBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEeceeecCCC---C----------------------CCCeeeccccHHHHHHHHHHHH
Confidence            99999888889999999999999421   0                      1123567899999999988764

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.96  E-value=4.2e-29  Score=208.72  Aligned_cols=206  Identities=17%  Similarity=0.122  Sum_probs=159.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcC-----CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCC---c
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIE---V   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~---~   98 (259)
                      +|+|+|||||||||++|+++|+++|     ++ |++++|+.....      ....+++++.+|+++.+     +.+   +
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~-V~~~~r~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~   73 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWK-VYGVARRTRPAW------HEDNPINYVQCDISDPDDSQAKLSPLTDV   73 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEE-EEEEESSCCCSC------CCSSCCEEEECCTTSHHHHHHHHTTCTTC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceE-EEEEeCCCCccc------cccCceEEEEeecCCHHHHHHHHhcCCCC
Confidence            4799999999999999999999999     87 999998754432      12347889999999876     445   9


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh--CC-eEE-------EEecceeecCC--CCCCCCCCCcCC
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RIL-------LTSTSEVYGDP--LVHPQDESYWGN  166 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i-------~~Ss~~~~~~~--~~~~~~e~~~~~  166 (259)
                      |+|||+||...     .++...+++|+.++.+++++|++.  ++ ++|       |+||..+|+..  ...+++|++   
T Consensus        74 d~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~---  145 (364)
T 2v6g_A           74 THVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDL---  145 (364)
T ss_dssp             CEEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTS---
T ss_pred             CEEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccc---
Confidence            99999998652     357889999999999999999998  66 887       89999999874  245677765   


Q ss_pred             CCCCCC-CCchHHHHHHHHHHHHHHHHHhC-CcEEEEEeccccCCCCCCCCccHHHH-HHHHH--HcCCCeEEecCC---
Q 025022          167 VNPIGV-RSCYDEGKRVAETLMFDYHRQHG-IEIRIARIFNTYGPRMNIDDGRVVSN-FIAQA--IRGEPLTVQAPG---  238 (259)
Q Consensus       167 ~~~~~~-~~~Y~~sK~~~e~~~~~~~~~~~-~~~~~lr~~~v~g~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~---  238 (259)
                        +..+ .+.|    ..+|++++.++++++ ++++++||+++|||+........++. +....  ..+.++.+++++   
T Consensus       146 --~~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~  219 (364)
T 2v6g_A          146 --PRLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAW  219 (364)
T ss_dssp             --CCCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHH
T ss_pred             --cCCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCcccc
Confidence              3333 4567    357888888877676 99999999999999865333334444 33334  367777767766   


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....++++++|+|++++.++
T Consensus       220 ~~~~~~~~v~Dva~a~~~~~  239 (364)
T 2v6g_A          220 DGYSDCSDADLIAEHHIWAA  239 (364)
T ss_dssp             HSCBCCEEHHHHHHHHHHHH
T ss_pred             cccCCCCcHHHHHHHHHHHH
Confidence            34578889999999998764

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.96  E-value=9.3e-29  Score=198.72  Aligned_cols=190  Identities=20%  Similarity=0.124  Sum_probs=154.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cC--CcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~--~~d~vi~~a  105 (259)
                      |+|+||||||+||++++++|++ |++ |++++|+....          .+   +.+|+++.+     +.  ++|+|||+|
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~~-V~~~~r~~~~~----------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a   65 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RHE-VIKVYNSSEIQ----------GG---YKLDLTDFPRLEDFIIKKRPDVIINAA   65 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TSC-EEEEESSSCCT----------TC---EECCTTSHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CCe-EEEecCCCcCC----------CC---ceeccCCHHHHHHHHHhcCCCEEEECC
Confidence            5899999999999999999995 888 99999865321          12   789998876     33  499999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      |.........+++..+++|+.++.+++++|++.+.+|||+||..+|+.... +++|+.     +..|.+.|+.+|.+.|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~~~~~~~~-~~~e~~-----~~~~~~~Y~~sK~~~e~  139 (273)
T 2ggs_A           66 AMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKG-NYKEED-----IPNPINYYGLSKLLGET  139 (273)
T ss_dssp             CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGSCSSSC-SBCTTS-----CCCCSSHHHHHHHHHHH
T ss_pred             cccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecceeEcCCCC-CcCCCC-----CCCCCCHHHHHHHHHHH
Confidence            976543334678889999999999999999988779999999999976433 667765     66777899999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +++.      ++++++||+.+||+      ..+...+......+.++.+.++   .+++++++|+|+++++++
T Consensus       140 ~~~~------~~~~~iR~~~v~G~------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~  197 (273)
T 2ggs_A          140 FALQ------DDSLIIRTSGIFRN------KGFPIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELL  197 (273)
T ss_dssp             HHCC------TTCEEEEECCCBSS------SSHHHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHH
T ss_pred             HHhC------CCeEEEeccccccc------cHHHHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHH
Confidence            9855      67899999999983      2356666667777777777653   789999999999998875

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.96  E-value=4.3e-29  Score=209.18  Aligned_cols=181  Identities=25%  Similarity=0.334  Sum_probs=152.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~~  111 (259)
                      |+|+|||||||||++|+++|+++|+ + |++++|+  ...+.+...                 +.++|+|||+||.... 
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~-v~~~d~~--~d~~~l~~~-----------------~~~~d~Vih~a~~~~~-   59 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHH-IFEVHRQ--TKEEELESA-----------------LLKADFIVHLAGVNRP-   59 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCE-EEECCTT--CCHHHHHHH-----------------HHHCSEEEECCCSBCT-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCE-EEEECCC--CCHHHHHHH-----------------hccCCEEEECCcCCCC-
Confidence            6899999999999999999999999 6 9888873  111222221                 3368999999997643 


Q ss_pred             ccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHH
Q 025022          112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFD  189 (259)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~  189 (259)
                         .++...+++|+.++.+++++|++.++  +|||+||..+|+                    .+.|+.+|.++|++++.
T Consensus        60 ---~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~--------------------~~~Y~~sK~~~E~~~~~  116 (369)
T 3st7_A           60 ---EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ--------------------DNPYGESKLQGEQLLRE  116 (369)
T ss_dssp             ---TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS--------------------CSHHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC--------------------CCCchHHHHHHHHHHHH
Confidence               34566778899999999999999886  899999998886                    26799999999999999


Q ss_pred             HHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          190 YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       190 ~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ++++.+++++++||+++|||+..+....++..++..+..+.++.+ ++++..++|+|++|+|++++.++
T Consensus       117 ~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l  184 (369)
T 3st7_A          117 YAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAI  184 (369)
T ss_dssp             HHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCC-SCTTCEEEEEEHHHHHHHHHHHH
T ss_pred             HHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEe-cCCCeEEEEEEHHHHHHHHHHHH
Confidence            999899999999999999998776656789999999998888776 46788999999999999998875

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.96  E-value=3.6e-29  Score=194.88  Aligned_cols=178  Identities=15%  Similarity=0.166  Sum_probs=143.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCc-cc-----cCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PL-----LIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~-~~-----~~~~d~vi~~a~  106 (259)
                      |+|+||||||+||++++++|+++|++ |+++.|+.......       .+++++.+|+++ .+     +.++|+|||+||
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag   72 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQ-IYAGARKVEQVPQY-------NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG   72 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCE-EEEEESSGGGSCCC-------TTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCccchhhc-------CCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence            68999999999999999999999998 99999965433211       489999999999 55     778999999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      ....        ..+++|+.++.+++++|++.++ +||++||.+++...   +..| .     +..+...|+.+|.+.|.
T Consensus        73 ~~~~--------~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~---~~~e-~-----~~~~~~~Y~~sK~~~e~  135 (219)
T 3dqp_A           73 SGGK--------SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE---KWIG-A-----GFDALKDYYIAKHFADL  135 (219)
T ss_dssp             CTTS--------SCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG---GCCS-H-----HHHHTHHHHHHHHHHHH
T ss_pred             CCCC--------CcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC---cccc-c-----ccccccHHHHHHHHHHH
Confidence            7542        2567899999999999999998 99999998766531   2223 1     44567889999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +++   +..+++++++||+++||+.....                 +. .+  ...+++++++|+|++++.++
T Consensus       136 ~~~---~~~~i~~~ilrp~~v~g~~~~~~-----------------~~-~~--~~~~~~i~~~Dva~~i~~~l  185 (219)
T 3dqp_A          136 YLT---KETNLDYTIIQPGALTEEEATGL-----------------ID-IN--DEVSASNTIGDVADTIKELV  185 (219)
T ss_dssp             HHH---HSCCCEEEEEEECSEECSCCCSE-----------------EE-ES--SSCCCCEEHHHHHHHHHHHH
T ss_pred             HHH---hccCCcEEEEeCceEecCCCCCc-----------------cc-cC--CCcCCcccHHHHHHHHHHHH
Confidence            986   45689999999999999863211                 11 22  56789999999999998876

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.96  E-value=3.3e-28  Score=189.48  Aligned_cols=192  Identities=14%  Similarity=0.169  Sum_probs=129.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---cCCcCEEEEccCCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---LIEVDQIYHLACPAS  109 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---~~~~d~vi~~a~~~~  109 (259)
                      |+|+||||||+||++++++|+++|++ |+++.|+...    .....  .+++++.+|+++.+   +.++|+|||+||...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~----~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~   73 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHE-VTAIVRNAGK----ITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISP   73 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCSHH----HHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSST
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCE-EEEEEcCchh----hhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCc
Confidence            68999999999999999999999998 9999986432    22221  47899999999886   788999999998743


Q ss_pred             ccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeec-CCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHH
Q 025022          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG-DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLM  187 (259)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~-~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~  187 (259)
                      .         ....|+.++.+++++|++.++ ++|++||...+. .....+..|+.     +..|...|+.+|...|.+ 
T Consensus        74 ~---------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~-----~~~~~~~y~~~k~~~e~~-  138 (221)
T 3ew7_A           74 D---------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESK-----GLREAPYYPTARAQAKQL-  138 (221)
T ss_dssp             T---------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC------------------------CCCSCCHHHHHHHH-
T ss_pred             c---------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCccccccC-----CCCCHHHHHHHHHHHHHH-
Confidence            1         135689999999999999977 999999986654 33333444443     556677899999999986 


Q ss_pred             HHHHH-HhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          188 FDYHR-QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       188 ~~~~~-~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ..+.. ..+++++++||+++|||+...  .    .+   ...+..+.+.+.+   .++++++|+|++++.++
T Consensus       139 ~~~~~~~~gi~~~ivrp~~v~g~~~~~--~----~~---~~~~~~~~~~~~~---~~~i~~~Dva~~~~~~l  198 (221)
T 3ew7_A          139 EHLKSHQAEFSWTYISPSAMFEPGERT--G----DY---QIGKDHLLFGSDG---NSFISMEDYAIAVLDEI  198 (221)
T ss_dssp             HHHHTTTTTSCEEEEECSSCCCCC---------------------------------CCCHHHHHHHHHHHH
T ss_pred             HHHHhhccCccEEEEeCcceecCCCcc--C----ce---EeccccceecCCC---CceEeHHHHHHHHHHHH
Confidence            34443 678999999999999984211  1    01   1122333333332   36999999999998875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.95  E-value=1.3e-28  Score=192.32  Aligned_cols=194  Identities=13%  Similarity=0.016  Sum_probs=142.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---cCCcCEEEEccCCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---LIEVDQIYHLACPAS  109 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---~~~~d~vi~~a~~~~  109 (259)
                      |+|+||||||+||++++++|+++|++ |+++.|+...    .... ...+++++.+|+++.+   +.++|+|||+||...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~----~~~~-~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~   74 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHE-VLAVVRDPQK----AADR-LGATVATLVKEPLVLTEADLDSVDAVVDALSVPW   74 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHH----HHHH-TCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCE-EEEEEecccc----cccc-cCCCceEEecccccccHhhcccCCEEEECCccCC
Confidence            68999999999999999999999998 9999985432    2221 2357899999999886   778999999999752


Q ss_pred             ccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCC-C--CCCCCCcCCCCCCCCCCchHHHHHHHHHH
Q 025022          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLV-H--PQDESYWGNVNPIGVRSCYDEGKRVAETL  186 (259)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~-~--~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~  186 (259)
                      ..       .....|+.++.+++++|++.+.++|++||...+..... .  +.+|..     .+.|...|+.+|...|.+
T Consensus        75 ~~-------~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~-----~~~~~~~y~~sK~~~e~~  142 (224)
T 3h2s_A           75 GS-------GRGYLHLDFATHLVSLLRNSDTLAVFILGSASLAMPGADHPMILDFPE-----SAASQPWYDGALYQYYEY  142 (224)
T ss_dssp             TS-------SCTHHHHHHHHHHHHTCTTCCCEEEEECCGGGSBCTTCSSCGGGGCCG-----GGGGSTTHHHHHHHHHHH
T ss_pred             Cc-------chhhHHHHHHHHHHHHHHHcCCcEEEEecceeeccCCCCccccccCCC-----CCccchhhHHHHHHHHHH
Confidence            11       12367999999999999998889999999865443222 1  222222     334478899999999954


Q ss_pred             HHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          187 MFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       187 ~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                       +.+.+..+++++++||+++||++....   +       ......+..   +....++++++|+|++++.++
T Consensus       143 -~~~~~~~~i~~~ivrp~~v~g~~~~~~---~-------~~~~~~~~~---~~~~~~~i~~~DvA~~~~~~l  200 (224)
T 3h2s_A          143 -QFLQMNANVNWIGISPSEAFPSGPATS---Y-------VAGKDTLLV---GEDGQSHITTGNMALAILDQL  200 (224)
T ss_dssp             -HHHTTCTTSCEEEEEECSBCCCCCCCC---E-------EEESSBCCC---CTTSCCBCCHHHHHHHHHHHH
T ss_pred             -HHHHhcCCCcEEEEcCccccCCCcccC---c-------eeccccccc---CCCCCceEeHHHHHHHHHHHh
Confidence             555556799999999999999853211   0       011111111   234568999999999998875

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.95  E-value=8.3e-27  Score=184.15  Aligned_cols=190  Identities=14%  Similarity=0.028  Sum_probs=144.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      |++|+|+||||+|+||++++++|+++|+  + |++++|+........     ..++.++.+|+++.+     +.++|+||
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~-V~~~~r~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~d~vi   89 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSK-VTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVGF   89 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSE-EEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEEE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCE-EEEEEcCCCCccccc-----cCCceEEecCcCCHHHHHHHhcCCCEEE
Confidence            5678999999999999999999999999  7 999998755432211     136788999999876     56899999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKR  181 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~  181 (259)
                      |+||....   ..+++..+++|+.++.++++++++.+. +||++||..+|+.                  +...|+.+|.
T Consensus        90 ~~ag~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~------------------~~~~Y~~sK~  148 (242)
T 2bka_A           90 CCLGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQVKG  148 (242)
T ss_dssp             ECCCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHH
T ss_pred             ECCCcccc---cCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC------------------CcchHHHHHH
Confidence            99996532   223567889999999999999999887 9999999987752                  2256999999


Q ss_pred             HHHHHHHHHHHHhCC-cEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          182 VAETLMFDYHRQHGI-EIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       182 ~~e~~~~~~~~~~~~-~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +.|.+++.    .++ +++++||++++||....   .....+........+. .++    ...+++++|+|+++++++
T Consensus       149 ~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~---~~~~~~~~~~~~~~~~-~~~----~~~~~~~~dva~~~~~~~  214 (242)
T 2bka_A          149 EVEAKVEE----LKFDRYSVFRPGVLLCDRQES---RPGEWLVRKFFGSLPD-SWA----SGHSVPVVTVVRAMLNNV  214 (242)
T ss_dssp             HHHHHHHT----TCCSEEEEEECCEEECTTGGG---SHHHHHHHHHHCSCCT-TGG----GGTEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHh----cCCCCeEEEcCceecCCCCCC---cHHHHHHHHhhcccCc-ccc----CCcccCHHHHHHHHHHHH
Confidence            99998744    467 59999999999987432   1223333333322221 111    235899999999999876

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.95  E-value=2.8e-27  Score=183.48  Aligned_cols=183  Identities=20%  Similarity=0.227  Sum_probs=141.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-cCC--cCEEEEcc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-LIE--VDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~--~d~vi~~a  105 (259)
                      ++|+|+||||+|+||++++++|+++|+  + |++++|+...         ...+++++.+|+.+.+ ...  +|+|||+|
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~-V~~~~r~~~~---------~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a   73 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAK-VIAPARKALA---------EHPRLDNPVGPLAELLPQLDGSIDTAFCCL   73 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCE-EECCBSSCCC---------CCTTEECCBSCHHHHGGGCCSCCSEEEECC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCe-EEEEeCCCcc---------cCCCceEEeccccCHHHHHHhhhcEEEECe
Confidence            357999999999999999999999998  6 9999986543         1247888899998876 111  89999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE  184 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e  184 (259)
                      |...  ....+++..+++|+.++.++++++++.+. +||++||..+|+.                  +.+.|+.+|.+.|
T Consensus        74 ~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~------------------~~~~y~~sK~~~e  133 (215)
T 2a35_A           74 GTTI--KEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELE  133 (215)
T ss_dssp             CCCH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHH
T ss_pred             eecc--ccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC------------------CccHHHHHHHHHH
Confidence            9653  22456788999999999999999999988 9999999987752                  2357999999999


Q ss_pred             HHHHHHHHHhCCc-EEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          185 TLMFDYHRQHGIE-IRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       185 ~~~~~~~~~~~~~-~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+++.    .+++ ++++||+++|||....   .++..    .. +...++ ++  ..++++|++|+|++++.++
T Consensus       134 ~~~~~----~~~~~~~~vrp~~v~g~~~~~---~~~~~----~~-~~~~~~-~~--~~~~~i~~~Dva~~~~~~~  193 (215)
T 2a35_A          134 QALQE----QGWPQLTIARPSLLFGPREEF---RLAEI----LA-APIARI-LP--GKYHGIEACDLARALWRLA  193 (215)
T ss_dssp             HHHTT----SCCSEEEEEECCSEESTTSCE---EGGGG----TT-CCCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH----cCCCeEEEEeCceeeCCCCcc---hHHHH----HH-Hhhhhc-cC--CCcCcEeHHHHHHHHHHHH
Confidence            98844    5899 9999999999987431   12211    11 222222 22  2678999999999998875

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.95  E-value=5.6e-27  Score=194.67  Aligned_cols=192  Identities=15%  Similarity=0.148  Sum_probs=144.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh--ccCCCceeEeecccCccc-----cC--CcC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK--WIGHPRFELIRHDVTEPL-----LI--EVD   99 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~dl~~~~-----~~--~~d   99 (259)
                      .|++|+|+||||||+||++|++.|++.|++ |+++.|+..........  .+...+++++.+|+.+.+     +.  ++|
T Consensus         7 ~M~~~~IlVtGatG~iG~~l~~~L~~~g~~-V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d   85 (346)
T 3i6i_A            7 PSPKGRVLIAGATGFIGQFVATASLDAHRP-TYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEID   85 (346)
T ss_dssp             ----CCEEEECTTSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCC-EEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCC
Confidence            366789999999999999999999999998 99999976433322221  112358999999999977     55  899


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchH
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYD  177 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~  177 (259)
                      +|||+++.               .|+.++.+++++|++.+ + +||+ |   .|+.    +.+|..     +..|...|+
T Consensus        86 ~Vi~~a~~---------------~n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~----~~~e~~-----~~~p~~~y~  137 (346)
T 3i6i_A           86 IVVSTVGG---------------ESILDQIALVKAMKAVGTIKRFLP-S---EFGH----DVNRAD-----PVEPGLNMY  137 (346)
T ss_dssp             EEEECCCG---------------GGGGGHHHHHHHHHHHCCCSEEEC-S---CCSS----CTTTCC-----CCTTHHHHH
T ss_pred             EEEECCch---------------hhHHHHHHHHHHHHHcCCceEEee-c---ccCC----CCCccC-----cCCCcchHH
Confidence            99999974               27888999999999999 7 7775 4   3442    233332     556778999


Q ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhh
Q 025022          178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       178 ~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~  257 (259)
                      .+|..+|++++    +.+++++++||++++|.....    .... ......+..+.++++++..++|++++|+|++++.+
T Consensus       138 ~sK~~~e~~l~----~~g~~~tivrpg~~~g~~~~~----~~~~-~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~  208 (346)
T 3i6i_A          138 REKRRVRQLVE----ESGIPFTYICCNSIASWPYYN----NIHP-SEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKT  208 (346)
T ss_dssp             HHHHHHHHHHH----HTTCCBEEEECCEESSCCCSC----C------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----HcCCCEEEEEecccccccCcc----cccc-ccccCCCceEEEccCCCceEEecCHHHHHHHHHHH
Confidence            99999998885    468999999999999965322    1111 11122556688889999999999999999999887


Q ss_pred             h
Q 025022          258 A  258 (259)
Q Consensus       258 l  258 (259)
                      +
T Consensus       209 l  209 (346)
T 3i6i_A          209 V  209 (346)
T ss_dssp             T
T ss_pred             H
Confidence            5

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.94  E-value=1.4e-27  Score=192.86  Aligned_cols=207  Identities=16%  Similarity=0.088  Sum_probs=144.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||+|+||++++++|+++|++ |++++|+.....+.....  ..++.++.+|+++.+            +.+
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDT-VIGTARRTEALDDLVAAY--PDRAEAISLDVTDGERIDVVAADVLARYGR   79 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHC--TTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHhc--cCCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence            45789999999999999999999999998 999998655433332222  247899999999977            358


Q ss_pred             cCEEEEccCCCCc----cccccChhHHHHHhhhhHHHH----HHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l----~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|+|||+||....    .....+++..+++|+.++..+    +..+++.+. +||++||...+.                
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------  143 (281)
T 3m1a_A           80 VDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL----------------  143 (281)
T ss_dssp             CSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC----------------
Confidence            9999999997543    122345677899999995555    445566676 999999987554                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCc---cHHHHHHHHHHcCCCeEEecCCceee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDG---RVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                      +..+...|+.+|.+.|.+.+.++.+   +++++++++||++.++.......   .....+.........+   .......
T Consensus       144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  220 (281)
T 3m1a_A          144 SFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQL---VQGSDGS  220 (281)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHH---HHC----
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHH---HhhccCC
Confidence            4455678999999999999999887   68999999999998875332110   0011111111100000   0112234


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++++|+|+++++++
T Consensus       221 ~~~~~~dva~a~~~~~  236 (281)
T 3m1a_A          221 QPGDPAKAAAAIRLAL  236 (281)
T ss_dssp             -CBCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            5778999999998775

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.94  E-value=6.7e-26  Score=179.19  Aligned_cols=199  Identities=19%  Similarity=0.134  Sum_probs=146.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQ  100 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~  100 (259)
                      ++++|+++||||+|+||++++++|+++|++ |++++|+.....+..+.   ..+++++.+|+++.+        ..++|+
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~   79 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTNSDLVSLAKE---CPGIEPVCVDLGDWDATEKALGGIGPVDL   79 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHh---ccCCCcEEecCCCHHHHHHHHHHcCCCCE
Confidence            367899999999999999999999999998 99998864322221111   135677899999877        346899


Q ss_pred             EEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----C-C-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          101 IYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       101 vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      |||+||.....    ....+++..+++|+.++.++++++.+.    + . +||++||...+.                +.
T Consensus        80 vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~  143 (244)
T 1cyd_A           80 LVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV----------------TF  143 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CC
T ss_pred             EEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcC----------------CC
Confidence            99999965431    123446778999999999998877543    5 4 999999987765                33


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      .+...|+.+|.+.|.+++.++.+   .+++++++||+.++++......  ....+...+..+.+         .++++++
T Consensus       144 ~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~  212 (244)
T 1cyd_A          144 PNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS--ADPEFARKLKERHP---------LRKFAEV  212 (244)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT--CCHHHHHHHHHHST---------TSSCBCH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccc--cCHHHHHHHHhcCC---------ccCCCCH
Confidence            34568999999999999998877   5899999999999997521000  01222233332222         2468999


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|+|+++++++
T Consensus       213 ~dva~~~~~l~  223 (244)
T 1cyd_A          213 EDVVNSILFLL  223 (244)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.94  E-value=2.2e-25  Score=171.53  Aligned_cols=183  Identities=13%  Similarity=0.098  Sum_probs=136.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      |++|+|+||||||+||++++++|+++|++ |+++.|+.......     ...+++++.+|+.+.+     +.++|+|||+
T Consensus         1 M~~~~ilVtGatG~iG~~l~~~l~~~g~~-V~~~~r~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~   74 (206)
T 1hdo_A            1 MAVKKIAIFGATGQTGLTTLAQAVQAGYE-VTVLVRDSSRLPSE-----GPRPAHVVVGDVLQAADVDKTVAGQDAVIVL   74 (206)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCGGGSCSS-----SCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCe-EEEEEeChhhcccc-----cCCceEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            34589999999999999999999999998 99999865432211     1347889999999876     6789999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA  183 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~  183 (259)
                      ||....    .++   .++|+.++.++++++++.++ +||++||..+|+....            .+.+...|+.+|...
T Consensus        75 a~~~~~----~~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~------------~~~~~~~y~~~K~~~  135 (206)
T 1hdo_A           75 LGTRND----LSP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK------------VPPRLQAVTDDHIRM  135 (206)
T ss_dssp             CCCTTC----CSC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC------------SCGGGHHHHHHHHHH
T ss_pred             ccCCCC----CCc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCccc------------ccccchhHHHHHHHH
Confidence            986543    111   24789999999999999988 9999999988874321            111557899999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       184 e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |.++    +..+++++++||+.+ +++...  ..+             ...... ....++++++|+|+++++++
T Consensus       136 e~~~----~~~~i~~~~lrp~~~-~~~~~~--~~~-------------~~~~~~-~~~~~~i~~~Dva~~~~~~~  189 (206)
T 1hdo_A          136 HKVL----RESGLKYVAVMPPHI-GDQPLT--GAY-------------TVTLDG-RGPSRVISKHDLGHFMLRCL  189 (206)
T ss_dssp             HHHH----HHTCSEEEEECCSEE-ECCCCC--SCC-------------EEESSS-CSSCSEEEHHHHHHHHHHTT
T ss_pred             HHHH----HhCCCCEEEEeCCcc-cCCCCC--cce-------------EecccC-CCCCCccCHHHHHHHHHHHh
Confidence            9987    456899999999997 333111  100             001111 00048999999999998875

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.94  E-value=2.7e-26  Score=185.63  Aligned_cols=178  Identities=14%  Similarity=0.174  Sum_probs=137.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc--CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a  105 (259)
                      |+|+|||||||||++++++|+++  |++ |++++|+..... .+.    ..+++++.+|+++.+     +.++|+|||+|
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~~-~l~----~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a   74 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQ-IIAIVRNVEKAS-TLA----DQGVEVRHGDYNQPESLQKAFAGVSKLLFIS   74 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGG-EEEEESCTTTTH-HHH----HTTCEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCe-EEEEEcCHHHHh-HHh----hcCCeEEEeccCCHHHHHHHHhcCCEEEEcC
Confidence            57999999999999999999999  998 999998654332 121    136889999999876     67899999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAE  184 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e  184 (259)
                      +...      .  .  ++|+.++.+++++|++.++ +|||+||..++..               +    ..|+.+|...|
T Consensus        75 ~~~~------~--~--~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~---------------~----~~y~~~K~~~E  125 (287)
T 2jl1_A           75 GPHY------D--N--TLLIVQHANVVKAARDAGVKHIAYTGYAFAEES---------------I----IPLAHVHLATE  125 (287)
T ss_dssp             CCCS------C--H--HHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGC---------------C----STHHHHHHHHH
T ss_pred             CCCc------C--c--hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC---------------C----CchHHHHHHHH
Confidence            8531      1  1  5689999999999999998 9999999877531               1    36999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       185 ~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ++++    ..+++++++||+.++|+...    ..+..   ....+. .. .+.++..++|+|++|+|++++.++
T Consensus       126 ~~~~----~~~~~~~ilrp~~~~~~~~~----~~~~~---~~~~~~-~~-~~~~~~~~~~i~~~Dva~~~~~~~  186 (287)
T 2jl1_A          126 YAIR----TTNIPYTFLRNALYTDFFVN----EGLRA---STESGA-IV-TNAGSGIVNSVTRNELALAAATVL  186 (287)
T ss_dssp             HHHH----HTTCCEEEEEECCBHHHHSS----GGGHH---HHHHTE-EE-ESCTTCCBCCBCHHHHHHHHHHHH
T ss_pred             HHHH----HcCCCeEEEECCEeccccch----hhHHH---HhhCCc-ee-ccCCCCccCccCHHHHHHHHHHHh
Confidence            9874    46899999999988875411    12222   222332 33 455677889999999999998775

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.94  E-value=3.8e-25  Score=177.51  Aligned_cols=199  Identities=19%  Similarity=0.133  Sum_probs=151.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+..  ..++.++.+|+++.+            +.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGAR-VVLADLPETDLAGAAASV--GRGAVHHVVDLTNEVSVRALIDFTIDTFG   84 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSCHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHh--CCCeEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999998 999998765444333332  357889999999987            45


Q ss_pred             CcCEEEEccCCCCc------cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           97 EVDQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        97 ~~d~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      ++|++||+||....      +...++++..+++|+.++.++++++    ++.+. +||++||...+.             
T Consensus        85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-------------  151 (271)
T 3tzq_B           85 RLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA-------------  151 (271)
T ss_dssp             CCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-------------
T ss_pred             CCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC-------------
Confidence            89999999997632      1233456789999999999999988    55566 999999987654             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+.+.++.+   +++++++++||.+++|.....   .............+.         .
T Consensus       152 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~~~~---------~  216 (271)
T 3tzq_B          152 ---AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVG---LPQPIVDIFATHHLA---------G  216 (271)
T ss_dssp             ---BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC------CHHHHHHHHTTSTT---------S
T ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCcccccc---CCHHHHHHHHhcCCC---------C
Confidence               3345578999999999999999887   689999999999999864321   112223333333221         2


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+..++|+|+++++++
T Consensus       217 r~~~p~dvA~~v~~L~  232 (271)
T 3tzq_B          217 RIGEPHEIAELVCFLA  232 (271)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            3568899999999875

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.94  E-value=4.5e-26  Score=181.80  Aligned_cols=206  Identities=18%  Similarity=0.112  Sum_probs=150.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||++++++|+++|++ |++++|+.....+..++.  ..++.++.+|+++.+            +.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   81 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGAT-VAIADIDIERARQAAAEI--GPAAYAVQMDVTRQDSIDAAIAATVEHAG   81 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh--CCCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            356799999999999999999999999998 999988644333222222  246889999999987            45


Q ss_pred             CcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|++||+||......    ..++++..+++|+.++.++++++.+    .+ . +||++||...+.              
T Consensus        82 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  147 (259)
T 4e6p_A           82 GLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR--------------  147 (259)
T ss_dssp             SCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS--------------
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc--------------
Confidence            8999999999754321    2345678889999999999988753    33 3 999999987654              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcC---CCeEEecCCce
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRG---EPLTVQAPGTQ  240 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  240 (259)
                        +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+++|...     ....+.......   ......++...
T Consensus       148 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p  220 (259)
T 4e6p_A          148 --GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWD-----GVDALFARYENRPRGEKKRLVGEAVP  220 (259)
T ss_dssp             --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHH-----HHHHHHHHHHTCCTTHHHHHHHHHST
T ss_pred             --CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhh-----hhhhhhhhhccCChHHHHHHHhccCC
Confidence              33445789999999999999998765   899999999999998621     111122221111   11111122233


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+.+++|+|+++++++
T Consensus       221 ~~r~~~~~dva~~v~~L~  238 (259)
T 4e6p_A          221 FGRMGTAEDLTGMAIFLA  238 (259)
T ss_dssp             TSSCBCTHHHHHHHHHTT
T ss_pred             CCCCcCHHHHHHHHHHHh
Confidence            456889999999998875

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.93  E-value=3.6e-25  Score=175.66  Aligned_cols=192  Identities=17%  Similarity=0.138  Sum_probs=138.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhc--CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      +++|+|+||||+|+||++++++|+++  |++ |+++.|+...    ....  ..++.++.+|+++.+     +.++|+||
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~-V~~~~r~~~~----~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vi   74 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFV-AKGLVRSAQG----KEKI--GGEADVFIGDITDADSINPAFQGIDALV   74 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCE-EEEEESCHHH----HHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcE-EEEEEcCCCc----hhhc--CCCeeEEEecCCCHHHHHHHHcCCCEEE
Confidence            45789999999999999999999999  787 9999885322    2221  246789999999876     67899999


Q ss_pred             EccCCCCcc-------------ccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022          103 HLACPASPI-------------FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus       103 ~~a~~~~~~-------------~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      |+||.....             ....+....+++|+.++.++++++++.+. +||++||..++..        ..     
T Consensus        75 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~--------~~-----  141 (253)
T 1xq6_A           75 ILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNP--------DH-----  141 (253)
T ss_dssp             ECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCT--------TC-----
T ss_pred             EeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCC--------CC-----
Confidence            999865321             11122335689999999999999999988 9999999876431        10     


Q ss_pred             CCC--CCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          169 PIG--VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       169 ~~~--~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      +..  ....|..+|...|.+++    ..+++++++||+.+||+......  .        ..+....+++   ...++++
T Consensus       142 ~~~~~~~~~y~~sK~~~e~~~~----~~~i~~~~vrpg~v~~~~~~~~~--~--------~~~~~~~~~~---~~~~~~~  204 (253)
T 1xq6_A          142 PLNKLGNGNILVWKRKAEQYLA----DSGTPYTIIRAGGLLDKEGGVRE--L--------LVGKDDELLQ---TDTKTVP  204 (253)
T ss_dssp             GGGGGGGCCHHHHHHHHHHHHH----TSSSCEEEEEECEEECSCSSSSC--E--------EEESTTGGGG---SSCCEEE
T ss_pred             ccccccchhHHHHHHHHHHHHH----hCCCceEEEecceeecCCcchhh--h--------hccCCcCCcC---CCCcEEc
Confidence            111  12358889999998874    47899999999999998643110  0        0011111112   1346899


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|+|+++++++
T Consensus       205 ~~Dva~~~~~~~  216 (253)
T 1xq6_A          205 RADVAEVCIQAL  216 (253)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999998875

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.93  E-value=9.1e-26  Score=179.53  Aligned_cols=201  Identities=15%  Similarity=0.125  Sum_probs=148.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++|+++||||+|+||++++++|+++|++ |++++|+........++.. ...++.++.+|+++.+            +
T Consensus         8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A            8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            467899999999999999999999999998 9999886432221111111 1246888999999877            2


Q ss_pred             CCcCEEEEccCCCCcc---ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           96 IEVDQIYHLACPASPI---FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      .++|+|||+||.....   ....+++..+++|+.++.++++++.    +.+. +||++||...+.               
T Consensus        87 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------  151 (255)
T 1fmc_A           87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN---------------  151 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC---------------
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC---------------
Confidence            4899999999976431   2234467889999999999988874    4566 999999987664               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.|.+++.++.+.   +++++++||+.++++.....   ..+.+......+.++         ..+
T Consensus       152 -~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~~~---------~~~  218 (255)
T 1fmc_A          152 -KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV---ITPEIEQKMLQHTPI---------RRL  218 (255)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CCHHHHHHHHHTCSS---------CSC
T ss_pred             -CCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhc---cChHHHHHHHhcCCc---------ccC
Confidence             33455789999999999999988764   89999999999998753211   112333333333332         246


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ++++|+|+++++++
T Consensus       219 ~~~~dva~~~~~l~  232 (255)
T 1fmc_A          219 GQPQDIANAALFLC  232 (255)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            79999999998875

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.93  E-value=2.2e-25  Score=180.61  Aligned_cols=204  Identities=20%  Similarity=0.137  Sum_probs=151.8

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc---------
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL---------   94 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~---------   94 (259)
                      .+..+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+++..  ..++.++.+|+++.+         
T Consensus        35 ~m~~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  113 (293)
T 3rih_A           35 VMFDLSARSVLVTGGTKGIGRGIATVFARAGAN-VAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTV  113 (293)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHH
Confidence            345577899999999999999999999999998 99999876544333333221  147889999999986         


Q ss_pred             ---cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                         +.++|++||+||.....    ...++++..+++|+.++.++++++    ++.+. +||++||...+..         
T Consensus       114 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~---------  184 (293)
T 3rih_A          114 VDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVT---------  184 (293)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTB---------
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccC---------
Confidence               46899999999976432    233456788999999999999887    35555 9999999764310         


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.+.+.+.++.+   +|+++++++||+++++....    ....+........++.      
T Consensus       185 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~p~~------  248 (293)
T 3rih_A          185 ------GYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVD----MGEEYISGMARSIPMG------  248 (293)
T ss_dssp             ------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHH----TCHHHHHHHHTTSTTS------
T ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhh----ccHHHHHHHHhcCCCC------
Confidence                  2334568999999999999999876   48999999999999975221    1123333444443322      


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                         .+..++|+|+++++++
T Consensus       249 ---r~~~p~dvA~~v~fL~  264 (293)
T 3rih_A          249 ---MLGSPVDIGHLAAFLA  264 (293)
T ss_dssp             ---SCBCHHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHh
Confidence               2457899999998876

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.93  E-value=1.8e-25  Score=178.49  Aligned_cols=203  Identities=19%  Similarity=0.127  Sum_probs=150.3

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~----------   94 (259)
                      +..+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+++..  ..++.++.+|+++.+          
T Consensus         5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (262)
T 3pk0_A            5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGAN-VAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAV   83 (262)
T ss_dssp             TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            44577899999999999999999999999998 99998865433322222211  247889999999987          


Q ss_pred             --cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCCCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                        +.++|++||+||.....    ...++++..+++|+.++.++++++.+.    +. +||++||......          
T Consensus        84 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~----------  153 (262)
T 3pk0_A           84 EEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPIT----------  153 (262)
T ss_dssp             HHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTB----------
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccC----------
Confidence              45899999999976432    233456778999999999998887553    55 9999999764310          


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                           +..+...|+.+|.+.+.+.+.++.+   +++++++++||.++++.....    ...+........+.        
T Consensus       154 -----~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~----~~~~~~~~~~~~p~--------  216 (262)
T 3pk0_A          154 -----GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLEN----GEEYIASMARSIPA--------  216 (262)
T ss_dssp             -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTT----CHHHHHHHHTTSTT--------
T ss_pred             -----CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccccc----CHHHHHHHHhcCCC--------
Confidence                 3344578999999999999999887   589999999999998753221    12233333333322        


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                       ..+..++|+|+++++++
T Consensus       217 -~r~~~p~dva~~v~~L~  233 (262)
T 3pk0_A          217 -GALGTPEDIGHLAAFLA  233 (262)
T ss_dssp             -SSCBCHHHHHHHHHHHH
T ss_pred             -CCCcCHHHHHHHHHHHh
Confidence             23568899999998876

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.93  E-value=9.8e-25  Score=175.77  Aligned_cols=205  Identities=17%  Similarity=0.164  Sum_probs=148.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||++++++|+++|++ |++++|+........+......++.++.+|+++.+            +.+
T Consensus        14 l~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   92 (278)
T 2bgk_A           14 LQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK   92 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            67899999999999999999999999998 98888854322222222211237889999999977            248


Q ss_pred             cCEEEEccCCCCc------cccccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           98 VDQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        98 ~d~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +|+|||+||....      .....+++..+++|+.++.++++++.+.    +. +||++||...+..             
T Consensus        93 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~-------------  159 (278)
T 2bgk_A           93 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA-------------  159 (278)
T ss_dssp             CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCC-------------
T ss_pred             CCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCC-------------
Confidence            9999999996532      1122446778999999999999988653    55 9999999987753             


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        .+.+...|+.+|.+.|.+++.++.+   ++++++++||++++++........ ............+       .....
T Consensus       160 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~  229 (278)
T 2bgk_A          160 --GEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGV-DSSRVEELAHQAA-------NLKGT  229 (278)
T ss_dssp             --CTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSC-CHHHHHHHHHHTC-------SSCSC
T ss_pred             --CCCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhccc-chhHHHHhhhccc-------ccccc
Confidence              1124467999999999999998876   589999999999999874322110 1122222221111       11235


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +++++|+|+++++++
T Consensus       230 ~~~~~dva~~~~~l~  244 (278)
T 2bgk_A          230 LLRAEDVADAVAYLA  244 (278)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHc
Confidence            789999999998875

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.93  E-value=2.9e-25  Score=175.80  Aligned_cols=199  Identities=20%  Similarity=0.103  Sum_probs=148.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++|+++||||+|+||+++++.|+++|++ |+++.++.....+.....+  ...++.++.+|+++.+            +
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYN-VAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35689999999999999999999999999 8777764322222222111  1346888999999977            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ...++++..+++|+.++.++++++    ++.+. +||++||...+.              
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  146 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV--------------  146 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC--------------
Confidence            5899999999976432    233456779999999999999988    45566 999999987654              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++....    .............++         ..
T Consensus       147 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~p~---------~r  211 (246)
T 3osu_A          147 --GNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA----LSDELKEQMLTQIPL---------AR  211 (246)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSC----SCHHHHHHHHTTCTT---------CS
T ss_pred             --CCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccc----cCHHHHHHHHhcCCC---------CC
Confidence              3334578999999999999998874   58999999999999876432    223344444444432         23


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +.+++|+|+++++++
T Consensus       212 ~~~~~dva~~v~~l~  226 (246)
T 3osu_A          212 FGQDTDIANTVAFLA  226 (246)
T ss_dssp             CBCHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHh
Confidence            568899999998875

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.93  E-value=8.5e-25  Score=174.20  Aligned_cols=198  Identities=17%  Similarity=0.156  Sum_probs=141.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++.  ..++.++.+|+++.+            +.+
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGAT-VLGLDLKPPAGEEPAAEL--GAAVRFRNADVTNEADATAALAFAKQEFGH   81 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            56789999999999999999999999998 999998765544333332  246889999999977            458


Q ss_pred             cCEEEEccCCCCcc--------ccccChhHHHHHhhhhHHHHHHHHHHh----------CC-eEEEEecceeecCCCCCC
Q 025022           98 VDQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPLVHP  158 (259)
Q Consensus        98 ~d~vi~~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-~~i~~Ss~~~~~~~~~~~  158 (259)
                      +|++||+||.....        ...++++..+++|+.++..+++++.+.          +. +||++||...+.      
T Consensus        82 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~------  155 (257)
T 3tpc_A           82 VHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD------  155 (257)
T ss_dssp             CCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH------
T ss_pred             CCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc------
Confidence            99999999976431        123456788999999999999988653          34 899999987665      


Q ss_pred             CCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe
Q 025022          159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQ  235 (259)
Q Consensus       159 ~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (259)
                                +..+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++....    .............+.   
T Consensus       156 ----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~----~~~~~~~~~~~~~p~---  218 (257)
T 3tpc_A          156 ----------GQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAG----MPQDVQDALAASVPF---  218 (257)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC------------------CCSSS---
T ss_pred             ----------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhcc----CCHHHHHHHHhcCCC---
Confidence                      3344578999999999999999877   68999999999999876321    111111111111111   


Q ss_pred             cCCceeeeeeeHHHHHHHHHhhh
Q 025022          236 APGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       236 ~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                           ...+..++|+|+++++++
T Consensus       219 -----~~r~~~~~dva~~v~~l~  236 (257)
T 3tpc_A          219 -----PPRLGRAEEYAALVKHIC  236 (257)
T ss_dssp             -----SCSCBCHHHHHHHHHHHH
T ss_pred             -----CCCCCCHHHHHHHHHHHc
Confidence                 134779999999998875

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.93  E-value=6.2e-25  Score=177.10  Aligned_cols=210  Identities=15%  Similarity=0.082  Sum_probs=145.5

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---CCCceeEeecccCccc----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~----------   94 (259)
                      .++++|+++||||+|+||+++++.|+++|++ |++++|+.....+.....+   ...++.++.+|+++.+          
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   99 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGAN-IVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVA   99 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence            3467889999999999999999999999998 9988884332222222111   1357889999999987          


Q ss_pred             --cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                        +.++|++||+||......    ..++++..+++|+.++.++++++    ++.+. +||++||...+.           
T Consensus       100 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------  168 (281)
T 3v2h_A          100 DRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV-----------  168 (281)
T ss_dssp             HHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-----------
T ss_pred             HHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc-----------
Confidence              468999999999764322    23456788999999999999887    44555 999999987554           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHH--HHHcCCC-eEEecC
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIA--QAIRGEP-LTVQAP  237 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~  237 (259)
                           +......|+.+|.+.+.+.+.++.+.   ++++.+++||.+.++.....    ......  ....... ...+..
T Consensus       169 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  239 (281)
T 3v2h_A          169 -----ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQ----IPDQARTRGITEEQVINEVMLK  239 (281)
T ss_dssp             -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC--------------------------------
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhh----cchhhhhcCCCHHHHHHHHHHh
Confidence                 33344689999999999999998764   79999999999998763211    111000  0000000 011223


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +.....+++++|+|+++++++
T Consensus       240 ~~p~~r~~~~edvA~~v~~L~  260 (281)
T 3v2h_A          240 GQPTKKFITVEQVASLALYLA  260 (281)
T ss_dssp             CCTTCSCBCHHHHHHHHHHHH
T ss_pred             cCCCCCccCHHHHHHHHHHHc
Confidence            344567899999999999876

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.93  E-value=4.1e-24  Score=173.04  Aligned_cols=178  Identities=14%  Similarity=0.169  Sum_probs=129.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~  106 (259)
                      |+|+||||||+||+++++.|++. |++ |+++.|+.......     ...+++++.+|+.+.+     +.++|+|||+|+
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~-V~~~~R~~~~~~~~-----~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~   74 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDH-FHIGVRNVEKVPDD-----WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS   74 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTT-EEEEESSGGGSCGG-----GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCc-EEEEECCHHHHHHh-----hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            68999999999999999999998 898 99999875443221     1257999999999977     789999999998


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      ....          ...|+.++.+++++|++.++ +|||+||....                 ...+ ..+...+...|.
T Consensus        75 ~~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~~-----------------~~~~-~~~~~~~~~~e~  126 (289)
T 3e48_A           75 IIHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYADQ-----------------HNNP-FHMSPYFGYASR  126 (289)
T ss_dssp             CCCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESCCS-----------------TTCC-STTHHHHHHHHH
T ss_pred             CCcc----------chhhHHHHHHHHHHHHHcCCCEEEEEcccCCC-----------------CCCC-CccchhHHHHHH
Confidence            6532          13478899999999999998 99999994311                 0011 012222223333


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .    ....+++++++||++++|+.        . .++....... ...++.++..++|++++|+|++++.++
T Consensus       127 ~----~~~~g~~~~ilrp~~~~~~~--------~-~~~~~~~~~~-~~~~~~g~~~~~~i~~~Dva~~~~~~l  185 (289)
T 3e48_A          127 L----LSTSGIDYTYVRMAMYMDPL--------K-PYLPELMNMH-KLIYPAGDGRINYITRNDIARGVIAII  185 (289)
T ss_dssp             H----HHHHCCEEEEEEECEESTTH--------H-HHHHHHHHHT-EECCCCTTCEEEEECHHHHHHHHHHHH
T ss_pred             H----HHHcCCCEEEEecccccccc--------H-HHHHHHHHCC-CEecCCCCceeeeEEHHHHHHHHHHHH
Confidence            3    35679999999999999963        1 2222333222 233456788999999999999998875

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.93  E-value=9.8e-25  Score=173.97  Aligned_cols=197  Identities=14%  Similarity=0.043  Sum_probs=139.4

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----------
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----------   94 (259)
                      ...++++|+++||||+|+||+++++.|+++|++ |++++|+.....+.+..    .++.++.+|+++.+           
T Consensus        21 ~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~   95 (260)
T 3gem_A           21 GHMTLSSAPILITGASQRVGLHCALRLLEHGHR-VIISYRTEHASVTELRQ----AGAVALYGDFSCETGIMAFIDLLKT   95 (260)
T ss_dssp             ------CCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESSCCHHHHHHHH----HTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHh----cCCeEEECCCCCHHHHHHHHHHHHH
Confidence            344567899999999999999999999999999 99999875443333332    25788999999987           


Q ss_pred             -cCCcCEEEEccCCCCccc---cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 -LIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                       +.++|++||+||......   ..++++..+++|+.++.++++++.+    .+. +||++||...+.             
T Consensus        96 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------------  162 (260)
T 3gem_A           96 QTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK-------------  162 (260)
T ss_dssp             HCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT-------------
T ss_pred             hcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC-------------
Confidence             468999999999764322   2234567899999999999888754    344 999999987654             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                         +..+...|+.+|.+.+.+.+.++.+.  ++++..++||.+..+....      ...........+         ...
T Consensus       163 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~------~~~~~~~~~~~p---------~~r  224 (260)
T 3gem_A          163 ---GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDD------AAYRANALAKSA---------LGI  224 (260)
T ss_dssp             ---CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC---------------------CC---------SCC
T ss_pred             ---CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCC------HHHHHHHHhcCC---------CCC
Confidence               33455789999999999999998876  4999999999998764211      111112222222         223


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +..++|+|+++++++
T Consensus       225 ~~~~edva~~v~~L~  239 (260)
T 3gem_A          225 EPGAEVIYQSLRYLL  239 (260)
T ss_dssp             CCCTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            557899999998874

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.93  E-value=1.9e-24  Score=172.42  Aligned_cols=204  Identities=18%  Similarity=0.106  Sum_probs=147.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||+++++.|+++|++ |++++|+........+... ...++.++.+|+++.+            +
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGAR-VIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            356789999999999999999999999998 9999886432222111111 1246889999999977            2


Q ss_pred             CCcCEEEEccCCCC-cc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPAS-PI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~-~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|+|||+||... ..    ....+++..+++|+.++.++++++.+    .+. +||++||...+...           
T Consensus        89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-----------  157 (260)
T 3awd_A           89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN-----------  157 (260)
T ss_dssp             SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC-----------
Confidence            47999999999654 11    12234577899999999999988754    455 99999998654321           


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.|.+++.++.+   ++++++++||++++++.....  ...+.+......+.++         .
T Consensus       158 ---~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~--~~~~~~~~~~~~~~~~---------~  223 (260)
T 3awd_A          158 ---RPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFG--MEKPELYDAWIAGTPM---------G  223 (260)
T ss_dssp             ---SSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHH--HTCHHHHHHHHHTCTT---------S
T ss_pred             ---CCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcc--cCChHHHHHHHhcCCc---------C
Confidence               2233468999999999999999877   689999999999999863200  0012233333333221         2


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++++|+|+++++++
T Consensus       224 ~~~~~~dva~~~~~l~  239 (260)
T 3awd_A          224 RVGQPDEVASVVQFLA  239 (260)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            4779999999998875

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.93  E-value=4e-25  Score=176.75  Aligned_cols=199  Identities=19%  Similarity=0.110  Sum_probs=142.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--------CCceeEeecccCccc-------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--------HPRFELIRHDVTEPL-------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~dl~~~~-------   94 (259)
                      +++++++||||+|+||+++++.|+++|++ |++++|+.....+..+....        ..++.++.+|+++.+       
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   83 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGAT-VAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE   83 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence            56789999999999999999999999998 99998864332221111110        146788999999876       


Q ss_pred             -----cCCc-CEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----C-C-eEEEEecceeecCCCCCC
Q 025022           95 -----LIEV-DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYGDPLVHP  158 (259)
Q Consensus        95 -----~~~~-d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~-~~i~~Ss~~~~~~~~~~~  158 (259)
                           +.++ |+|||+||.....    ....+++..+++|+.++.++++++.+.    + . +||++||...+.      
T Consensus        84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------  157 (264)
T 2pd6_A           84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV------  157 (264)
T ss_dssp             HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH------
T ss_pred             HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc------
Confidence                 3456 9999999976431    123456788999999999999887653    4 4 999999986543      


Q ss_pred             CCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe
Q 025022          159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQ  235 (259)
Q Consensus       159 ~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (259)
                                +..+...|+.+|.+.+.+.+.++.+   .+++++++||++++++....    ....+........+    
T Consensus       158 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~----  219 (264)
T 2pd6_A          158 ----------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK----VPQKVVDKITEMIP----  219 (264)
T ss_dssp             ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC--------------CTGGGCT----
T ss_pred             ----------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhh----cCHHHHHHHHHhCC----
Confidence                      2234568999999999999998877   68999999999999986321    11111111111111    


Q ss_pred             cCCceeeeeeeHHHHHHHHHhhh
Q 025022          236 APGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       236 ~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                           ...+++++|+|+++++++
T Consensus       220 -----~~~~~~~~dva~~~~~l~  237 (264)
T 2pd6_A          220 -----MGHLGDPEDVADVVAFLA  237 (264)
T ss_dssp             -----TCSCBCHHHHHHHHHHHH
T ss_pred             -----CCCCCCHHHHHHHHHHHc
Confidence                 124679999999998875

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.93  E-value=5.9e-25  Score=175.99  Aligned_cols=201  Identities=17%  Similarity=0.124  Sum_probs=132.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |+++.|+.....+..+... ...++.++.+|+++.+            +
T Consensus        11 ~l~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAV-IHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF   89 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            367899999999999999999999999998 9999886433222221111 1246888999999876            2


Q ss_pred             -CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 -IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 -~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                       .++|+|||+||.....    ....+++..+++|+.++.++++++    ++.+. +||++||...+.             
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------------  156 (266)
T 1xq1_A           90 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV-------------  156 (266)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-------------------
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcc-------------
Confidence             6899999999965431    123456778999999999999888    45565 999999987664             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+++.++.+.   +++++++||++++++.....   ....+.......         ....
T Consensus       157 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~---------~~~~  221 (266)
T 1xq1_A          157 ---SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV---YDDEFKKVVISR---------KPLG  221 (266)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----------------------------------
T ss_pred             ---CCCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhh---cCHHHHHHHHhc---------CCCC
Confidence               22344679999999999999988764   89999999999999863211   001111111111         1123


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++++|+|+++++++
T Consensus       222 ~~~~~~dva~~~~~l~  237 (266)
T 1xq1_A          222 RFGEPEEVSSLVAFLC  237 (266)
T ss_dssp             --CCGGGGHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            4789999999998875

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.93  E-value=1.6e-24  Score=172.82  Aligned_cols=191  Identities=15%  Similarity=0.128  Sum_probs=145.9

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~   95 (259)
                      ..+++++++||||+|+||+++++.|+++|++ |++++|+.....        ..++.++.+|+++.+            +
T Consensus        24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   94 (260)
T 3un1_A           24 MRNQQKVVVITGASQGIGAGLVRAYRDRNYR-VVATSRSIKPSA--------DPDIHTVAGDISKPETADRIVREGIERF   94 (260)
T ss_dssp             HHTTCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSCCCCS--------STTEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             hCcCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChhhcc--------cCceEEEEccCCCHHHHHHHHHHHHHHC
Confidence            3456889999999999999999999999998 999988654322        236889999999987            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ...++++..+++|+.++.++++++    ++.+. +||++||...+...            
T Consensus        95 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------------  162 (260)
T 3un1_A           95 GRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPM------------  162 (260)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCB------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCC------------
Confidence            5899999999976432    223456788999999999999887    45555 99999997654321            


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+++|.....   .    ........+         ...
T Consensus       163 --~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~---~----~~~~~~~~p---------~~r  224 (260)
T 3un1_A          163 --VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE---T----HSTLAGLHP---------VGR  224 (260)
T ss_dssp             --TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG---G----HHHHHTTST---------TSS
T ss_pred             --CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH---H----HHHHhccCC---------CCC
Confidence              33445789999999999999999886   89999999999999864311   1    111222222         234


Q ss_pred             eeeHHHHHHHHHhh
Q 025022          244 FCYVSDMVCKSCFL  257 (259)
Q Consensus       244 ~i~v~D~a~~~~~~  257 (259)
                      +.+++|+|++++++
T Consensus       225 ~~~~~dva~av~~L  238 (260)
T 3un1_A          225 MGEIRDVVDAVLYL  238 (260)
T ss_dssp             CBCHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHh
Confidence            67899999999876

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.93  E-value=1.2e-25  Score=178.66  Aligned_cols=201  Identities=15%  Similarity=0.048  Sum_probs=139.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----c----CCcCEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L----IEVDQIY  102 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~----~~~d~vi  102 (259)
                      ||+|+||||+|+||++++++|+++|++ |++++|+......            .+.+|+.+.+     +    .++|+||
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~------------~~~~D~~~~~~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGHT-VIGIDRGQADIEA------------DLSTPGGRETAVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSSEEC------------CTTSHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCCE-EEEEeCChhHccc------------cccCCcccHHHHHHHHHHcCCCccEEE
Confidence            368999999999999999999999998 9999986543210            1567887765     2    5899999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCCCCCC-C-------CCCCcC--CC
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHP-Q-------DESYWG--NV  167 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~~~~~-~-------~e~~~~--~~  167 (259)
                      |+||....   ..+++..+++|+.++.++++++.+.    +. +||++||..+|+.....+ .       +|+...  ..
T Consensus        68 ~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (255)
T 2dkn_A           68 CCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAE  144 (255)
T ss_dssp             ECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHH
T ss_pred             ECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhcc
Confidence            99997541   3457889999999999999987654    44 999999998886431100 0       000000  00


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      ....+...|+.+|.+.|.+++.++.+   .+++++++||++++|+..        ..+......+.....+. + ...++
T Consensus       145 ~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~--------~~~~~~~~~~~~~~~~~-~-~~~~~  214 (255)
T 2dkn_A          145 QQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLL--------QASKADPRYGESTRRFV-A-PLGRG  214 (255)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHH--------HHHHHCTTTHHHHHSCC-C-TTSSC
T ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhh--------hhcccchhhHHHHHHHH-H-HhcCC
Confidence            01135578999999999999998776   589999999999999742        11111000000000000 1 23468


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ++++|+|+++++++
T Consensus       215 ~~~~dva~~~~~l~  228 (255)
T 2dkn_A          215 SEPREVAEAIAFLL  228 (255)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998875

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.92  E-value=5.8e-25  Score=178.16  Aligned_cols=201  Identities=13%  Similarity=0.113  Sum_probs=148.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------   94 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+......  ...++.++.+|+++.+            
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGAN-IAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999999998 8888886543222222221  1357889999999977            


Q ss_pred             cCCcCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHHHhC--C-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           95 LIEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +.++|++||+||.....     ...++++..+++|+.++.++++++.+.-  . +||++||...+.              
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~--------------  188 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYE--------------  188 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHH--------------
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcC--------------
Confidence            45899999999965421     1334577899999999999999997652  2 999999987765              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+.+.++.+.   ++++..++||.++++.....   .-.........         ......
T Consensus       189 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~---------~~p~~r  254 (291)
T 3ijr_A          189 --GNETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSS---FDEKKVSQFGS---------NVPMQR  254 (291)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHH---SCHHHHHHTTT---------TSTTSS
T ss_pred             --CCCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCccccc---CCHHHHHHHHc---------cCCCCC
Confidence              33344679999999999999998775   89999999999998741100   00111111111         122335


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +.+++|+|+++++++
T Consensus       255 ~~~p~dvA~~v~~L~  269 (291)
T 3ijr_A          255 PGQPYELAPAYVYLA  269 (291)
T ss_dssp             CBCGGGTHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHh
Confidence            678999999999876

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.92  E-value=9.1e-25  Score=174.63  Aligned_cols=203  Identities=12%  Similarity=0.078  Sum_probs=145.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------~   95 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++...  ..++.++.+|+++.+            +
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGAH-IVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            56789999999999999999999999998 99998864332221111110  246888999999987            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ....+++..+++|+.++.++++++.    +.+. +||++||...+.              
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  149 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQ--------------  149 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC--------------
Confidence            4899999999975431    1234567889999999999988774    4555 999999987765              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcc-------HHHHHHHHHHcC-CCeEEe
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGR-------VVSNFIAQAIRG-EPLTVQ  235 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~  235 (259)
                        +..+...|+.+|.+.+.+.+.++.+   +++++++++||++++|........       ............ .     
T Consensus       150 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  222 (263)
T 3ai3_A          150 --PLWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHA-----  222 (263)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHC-----
T ss_pred             --CCCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcCC-----
Confidence              2334467999999999999998876   589999999999999752100000       001111111111 1     


Q ss_pred             cCCceeeeeeeHHHHHHHHHhhh
Q 025022          236 APGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       236 ~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ....+++++|+|+++++++
T Consensus       223 ----p~~~~~~~~dvA~~~~~l~  241 (263)
T 3ai3_A          223 ----PIKRFASPEELANFFVFLC  241 (263)
T ss_dssp             ----TTCSCBCHHHHHHHHHHHT
T ss_pred             ----CCCCCcCHHHHHHHHHHHc
Confidence                1235789999999998875

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.92  E-value=8.4e-25  Score=172.90  Aligned_cols=198  Identities=19%  Similarity=0.131  Sum_probs=144.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~v  101 (259)
                      +++++++||||+|+||++++++|+++|++ |++++|+.....+..++ .  .+.+++.+|+++.+        ..++|+|
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~id~v   80 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQADLDSLVRE-C--PGIEPVCVDLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHH-S--TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHH-c--CCCCEEEEeCCCHHHHHHHHHHcCCCCEE
Confidence            56789999999999999999999999998 99988854322221121 1  25677899999877        3479999


Q ss_pred             EEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       102 i~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      ||+||......    ..++++..+++|+.++.++++++.+    .+ . +||++||...+.                +..
T Consensus        81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~  144 (244)
T 3d3w_A           81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------------AVT  144 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred             EECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc----------------CCC
Confidence            99999754321    2234678899999999998887754    35 4 999999987654                334


Q ss_pred             CCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHH
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS  248 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  248 (259)
                      +...|+.+|.+.|.+++.++.+   .++++++++|+.++++.......  ............+         ...+++++
T Consensus       145 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~  213 (244)
T 3d3w_A          145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWS--DPHKAKTMLNRIP---------LGKFAEVE  213 (244)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSC--STTHHHHHHHTCT---------TCSCBCHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhcc--ChHHHHHHHhhCC---------CCCCcCHH
Confidence            4578999999999999998876   47999999999999975221000  0011122222211         23578999


Q ss_pred             HHHHHHHhhh
Q 025022          249 DMVCKSCFLA  258 (259)
Q Consensus       249 D~a~~~~~~l  258 (259)
                      |+|+++++++
T Consensus       214 dva~~~~~l~  223 (244)
T 3d3w_A          214 HVVNAILFLL  223 (244)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998875

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.92  E-value=1.1e-24  Score=176.02  Aligned_cols=174  Identities=16%  Similarity=0.173  Sum_probs=130.2

Q ss_pred             EEEEEcCchhhhHHHHHHHHhc--CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccC
Q 025022           34 RILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~  106 (259)
                      +|+||||||+||++++++|+++  |++ |++++|+...... +..    .+++++.+|+++.+     +.++|+|||+|+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~-V~~~~r~~~~~~~-~~~----~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQ-IVAIVRNPAKAQA-LAA----QGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGG-EEEEESCTTTCHH-HHH----TTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCce-EEEEEcChHhhhh-hhc----CCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            5899999999999999999998  998 9999986543321 211    36889999999876     678999999998


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      ...            ..|+.++.+++++|++.++ +||++||..+|..               +    ..|+.+|...|+
T Consensus        75 ~~~------------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~---------------~----~~y~~sK~~~e~  123 (286)
T 2zcu_A           75 SEV------------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADTS---------------P----LGLADEHIETEK  123 (286)
T ss_dssp             -------------------CHHHHHHHHHHHHTCCEEEEEEETTTTTC---------------C----STTHHHHHHHHH
T ss_pred             CCc------------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC---------------c----chhHHHHHHHHH
Confidence            421            1478899999999999998 9999999876620               1    369999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +++    +.+++++++||+.++++..         .++........+. .+.++..++|+|++|+|++++.++
T Consensus       124 ~~~----~~~~~~~ilrp~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~i~~~Dva~~~~~~~  182 (286)
T 2zcu_A          124 MLA----DSGIVYTLLRNGWYSENYL---------ASAPAALEHGVFI-GAAGDGKIASATRADYAAAAARVI  182 (286)
T ss_dssp             HHH----HHCSEEEEEEECCBHHHHH---------TTHHHHHHHTEEE-ESCTTCCBCCBCHHHHHHHHHHHH
T ss_pred             HHH----HcCCCeEEEeChHHhhhhH---------HHhHHhhcCCcee-ccCCCCccccccHHHHHHHHHHHh
Confidence            884    3689999999987666421         1122222233344 456678899999999999998765

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.92  E-value=1.7e-24  Score=172.34  Aligned_cols=200  Identities=20%  Similarity=0.145  Sum_probs=142.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||++++++|+++|++ |++++|+... . .....+.  . .++.+|+++.+            +.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~-~-~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~~~g   76 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGAL-VALCDLRPEG-K-EVAEAIG--G-AFFQVDLEDERERVRFVEEAAYALG   76 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTH-H-HHHHHHT--C-EEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChhH-H-HHHHHhh--C-CEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            366899999999999999999999999998 9999887554 2 2222222  3 78899999876            35


Q ss_pred             CcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||......    ..++++..+++|+.++.++++++.+    .+. +||++||...+.               
T Consensus        77 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------------  141 (256)
T 2d1y_A           77 RVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF---------------  141 (256)
T ss_dssp             CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS---------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC---------------
Confidence            8999999999764321    2234678899999999999887754    455 999999986543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHH-cCCCeEEecCCceeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAI-RGEPLTVQAPGTQTRS  243 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  243 (259)
                       +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++.        ...+..... .......+........
T Consensus       142 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (256)
T 2d1y_A          142 -AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA--------VLEAIALSPDPERTRRDWEDLHALRR  212 (256)
T ss_dssp             -BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH--------HHHHHC--------CHHHHTTSTTSS
T ss_pred             -CCCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch--------hhhccccccCCHHHHHHHHhcCCCCC
Confidence             22344679999999999999988764   7999999999988753        111100000 0010000111122345


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +++++|+|+++++++
T Consensus       213 ~~~~~dvA~~~~~l~  227 (256)
T 2d1y_A          213 LGKPEEVAEAVLFLA  227 (256)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHh
Confidence            889999999998875

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.92  E-value=7.5e-26  Score=174.49  Aligned_cols=180  Identities=15%  Similarity=0.170  Sum_probs=139.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----c---CCcCEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L---IEVDQIYHL  104 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~---~~~d~vi~~  104 (259)
                      |+++||||+|+||++++++|+++  + |++++|+..... .+.....  . .++.+|+++.+     .   .++|+|||+
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~-V~~~~r~~~~~~-~~~~~~~--~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--D-LLLSGRRAGALA-ELAREVG--A-RALPADLADELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--E-EEEECSCHHHHH-HHHHHHT--C-EECCCCTTSHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--C-EEEEECCHHHHH-HHHHhcc--C-cEEEeeCCCHHHHHHHHHhcCCCCEEEEC
Confidence            68999999999999999999998  5 999988543222 1211121  2 78899999877     2   389999999


Q ss_pred             cCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHH
Q 025022          105 ACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       105 a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      ||.....    ....+++..+++|+.++.++++++++.+. +||++||...+.                +..+...|+.+
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~~Y~~s  137 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYV----------------QVPGFAAYAAA  137 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHH----------------SSTTBHHHHHH
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhcc----------------CCCCcchHHHH
Confidence            9976431    23455778999999999999999966666 999999998775                34456789999


Q ss_pred             HHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHh
Q 025022          180 KRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCF  256 (259)
Q Consensus       180 K~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  256 (259)
                      |.+.|.+++.++.+   ++++++++||+.++++...                       +.+.....+++++|+|+++++
T Consensus       138 K~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~-----------------------~~~~~~~~~~~~~dva~~~~~  194 (207)
T 2yut_A          138 KGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA-----------------------PLGGPPKGALSPEEAARKVLE  194 (207)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG-----------------------GGTSCCTTCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc-----------------------ccCCCCCCCCCHHHHHHHHHH
Confidence            99999999998877   5899999999999986411                       011223578999999999988


Q ss_pred             hh
Q 025022          257 LA  258 (259)
Q Consensus       257 ~l  258 (259)
                      ++
T Consensus       195 ~~  196 (207)
T 2yut_A          195 GL  196 (207)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.92  E-value=8.6e-25  Score=174.86  Aligned_cols=201  Identities=11%  Similarity=0.006  Sum_probs=144.3

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----------
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----------   94 (259)
                      ++..+++|+++||||+|+||+++++.|+++|+. |++.+|+.....+..+..  ..++.++.+|+++.+           
T Consensus        21 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~   97 (266)
T 3grp_A           21 SMFKLTGRKALVTGATGGIGEAIARCFHAQGAI-VGLHGTREDKLKEIAADL--GKDVFVFSANLSDRKSIKQLAEVAER   97 (266)
T ss_dssp             CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             chhccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh--CCceEEEEeecCCHHHHHHHHHHHHH
Confidence            455678899999999999999999999999998 888888543332222222  247889999999987           


Q ss_pred             -cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 -LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       +.++|++||+||.....    ...++++..+++|+.++..+++++    ++.+. +||++||...+.            
T Consensus        98 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~------------  165 (266)
T 3grp_A           98 EMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVV------------  165 (266)
T ss_dssp             HHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC----------------
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcC------------
Confidence             35899999999976431    223457788999999977776665    44555 999999986553            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          +..+...|+.+|.+.+.+.+.++.+.   ++++.+++||.+.++.....    ............+         .
T Consensus       166 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~----~~~~~~~~~~~~p---------~  228 (266)
T 3grp_A          166 ----GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL----NEKQKEAIMAMIP---------M  228 (266)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC----CHHHHHHHHTTCT---------T
T ss_pred             ----CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc----CHHHHHHHHhcCC---------C
Confidence                23344679999999999999988764   79999999999988642211    1222333333333         2


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+.+++|+|+++++++
T Consensus       229 ~r~~~~edvA~~v~~L~  245 (266)
T 3grp_A          229 KRMGIGEEIAFATVYLA  245 (266)
T ss_dssp             CSCBCHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHh
Confidence            34668999999999876

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.92  E-value=6.4e-25  Score=177.15  Aligned_cols=212  Identities=18%  Similarity=0.097  Sum_probs=148.4

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC--------cchhhh---cc--CCCceeEeecccCcc
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--------KDNLRK---WI--GHPRFELIRHDVTEP   93 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--------~~~~~~---~~--~~~~~~~~~~dl~~~   93 (259)
                      +..+++|+++||||+|+||+++++.|+++|++ |++++|+....        .+.+..   ..  ...++.++.+|+++.
T Consensus         5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   83 (281)
T 3s55_A            5 MADFEGKTALITGGARGMGRSHAVALAEAGAD-IAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDR   83 (281)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence            44577899999999999999999999999999 99988864321        111111   11  135788999999998


Q ss_pred             c------------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeec
Q 025022           94 L------------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (259)
Q Consensus        94 ~------------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~  152 (259)
                      +            +.++|++||+||.....    ...++++..+++|+.++.++++++    ++.+. +||++||...+.
T Consensus        84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  163 (281)
T 3s55_A           84 AALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS  163 (281)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC
Confidence            7            45899999999976532    233456788999999999999886    34555 999999987664


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHH-HHHHHHc
Q 025022          153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSN-FIAQAIR  228 (259)
Q Consensus       153 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~-~~~~~~~  228 (259)
                                      +..+...|+.+|.+.+.+.+.++.+   +++++++++||++++|.....   .... +......
T Consensus       164 ----------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~~~~~  224 (281)
T 3s55_A          164 ----------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHND---FVFGTMRPDLEK  224 (281)
T ss_dssp             ----------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSH---HHHHC-------
T ss_pred             ----------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccch---hhhccccccccc
Confidence                            3345578999999999999999886   489999999999999864320   0000 0000000


Q ss_pred             CCC----eEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          229 GEP----LTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       229 ~~~----~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ...    ..+.........+++++|+|+++++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~  258 (281)
T 3s55_A          225 PTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLV  258 (281)
T ss_dssp             CCHHHHHHHHHHHCSSSCSCBCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHhhhccCcCCCCHHHHHHHHHHHc
Confidence            000    000000111256889999999999876

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.92  E-value=1.8e-24  Score=172.28  Aligned_cols=201  Identities=12%  Similarity=0.051  Sum_probs=145.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC-CCCCcchhhhcc-CCCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWI-GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~-~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------   94 (259)
                      ++++|+++||||+|+||++++++|+++|++ |++++|+ ........++.. ...++.++.+|+++.+            
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAK-VGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999998 9999987 333222111111 1246889999999977            


Q ss_pred             cCCcCEEEEccCC-CCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC------CeEEEEecceeecCCCCCCC
Q 025022           95 LIEVDQIYHLACP-ASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG------ARILLTSTSEVYGDPLVHPQ  159 (259)
Q Consensus        95 ~~~~d~vi~~a~~-~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~------~~~i~~Ss~~~~~~~~~~~~  159 (259)
                      +.++|+|||+||. ....    ....+++..+++|+.++.++++++.+    .+      .+||++||...+..      
T Consensus        83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------  156 (258)
T 3afn_B           83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG------  156 (258)
T ss_dssp             HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC------
T ss_pred             cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC------
Confidence            2489999999996 3221    12234667889999999998886632    22      38999999876541      


Q ss_pred             CCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 025022          160 DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       160 ~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (259)
                               +..+...|+.+|.+.|.+++.++.+.   +++++++||+.++++.....    ...+......+.+     
T Consensus       157 ---------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~-----  218 (258)
T 3afn_B          157 ---------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK----TQDVRDRISNGIP-----  218 (258)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC----CHHHHHHHHTTCT-----
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc----CHHHHHHHhccCC-----
Confidence                     22344679999999999999988764   89999999999999864321    1233333333322     


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ...+++++|+|+++++++
T Consensus       219 ----~~~~~~~~dva~~~~~l~  236 (258)
T 3afn_B          219 ----MGRFGTAEEMAPAFLFFA  236 (258)
T ss_dssp             ----TCSCBCGGGTHHHHHHHH
T ss_pred             ----CCcCCCHHHHHHHHHHHh
Confidence                235789999999998875

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.92  E-value=1.4e-24  Score=174.83  Aligned_cols=215  Identities=17%  Similarity=0.076  Sum_probs=152.0

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC--------Ccchhhhc---c--CCCceeEeecccCcc
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--------SKDNLRKW---I--GHPRFELIRHDVTEP   93 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--------~~~~~~~~---~--~~~~~~~~~~dl~~~   93 (259)
                      ...+++++++||||+|+||+++++.|+++|++ |++++|+...        ..+.++..   .  ...++.++.+|+++.
T Consensus         8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   86 (278)
T 3sx2_A            8 EGPLTGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDR   86 (278)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCH
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence            34467899999999999999999999999999 8888876321        11111111   0  135788999999998


Q ss_pred             c------------cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCC
Q 025022           94 L------------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPL  155 (259)
Q Consensus        94 ~------------~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~  155 (259)
                      +            +.++|++||+||........++++..+++|+.++.++++++.+    .+ . +||++||...+....
T Consensus        87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~  166 (278)
T 3sx2_A           87 ESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG  166 (278)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc
Confidence            7            3589999999998755444566788999999999999988643    33 3 999999987553210


Q ss_pred             CCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHH-HHHcCCC
Q 025022          156 VHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIA-QAIRGEP  231 (259)
Q Consensus       156 ~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~  231 (259)
                                  .+..+...|+.+|.+.+.+.+.++.+.   +++++.++||.+.++....   ........ .......
T Consensus       167 ------------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~---~~~~~~~~~~~~~~~~  231 (278)
T 3sx2_A          167 ------------SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINN---EFTREWLAKMAAATDT  231 (278)
T ss_dssp             ------------CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSS---HHHHHHHHHHHHHCC-
T ss_pred             ------------cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchh---hhHHHHHhhccchhhh
Confidence                        022344679999999999999998764   6999999999999986431   12222222 1222221


Q ss_pred             eEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          232 LTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       232 ~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ...++.... ..+++++|+|+++++++
T Consensus       232 ~~~~~~~~p-~~~~~p~dvA~~v~~l~  257 (278)
T 3sx2_A          232 PGAMGNAMP-VEVLAPEDVANAVAWLV  257 (278)
T ss_dssp             -CTTSCSSS-CSSBCHHHHHHHHHHHT
T ss_pred             hhhhhhhcC-cCcCCHHHHHHHHHHHh
Confidence            222233233 57889999999999876

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.92  E-value=1.2e-24  Score=172.30  Aligned_cols=199  Identities=13%  Similarity=0.035  Sum_probs=143.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++++||||+|+||++++++|+++|++ |+++.|+........+.+.  ...++.++.+|+++.+            +
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGST-VIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            56789999999999999999999999998 9999886432221111110  1246888999999877            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|+|||+||.....    ....+++..+++|+.++.++++++    ++.+. +||++||...+.              
T Consensus        84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------------  149 (248)
T 2pnf_A           84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFT--------------  149 (248)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHH--------------
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcC--------------
Confidence            4899999999976431    123456788999999997776654    45566 999999986543              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.+.+.+.++.+.   ++++++++|+.++++....    ....+........+         ...
T Consensus       150 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~~  214 (248)
T 2pnf_A          150 --GNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAV----LSEEIKQKYKEQIP---------LGR  214 (248)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG----SCHHHHHHHHHTCT---------TSS
T ss_pred             --CCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhh----ccHHHHHHHHhcCC---------CCC
Confidence              12234679999999999999987753   7999999999999876321    11122222222221         124


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +++++|+|+++++++
T Consensus       215 ~~~~~dva~~~~~l~  229 (248)
T 2pnf_A          215 FGSPEEVANVVLFLC  229 (248)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHh
Confidence            789999999998875

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.92  E-value=1.6e-24  Score=173.30  Aligned_cols=200  Identities=17%  Similarity=0.157  Sum_probs=144.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------cC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++++||||+|+||++++++|+++|++ |+++.|+.....+.+.+...  ..++.++.+|+++.+            +.
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYS-VTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999999998 88887654433333332221  247899999999987            35


Q ss_pred             CcCEEEEccCCC--Cc----cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           97 EVDQIYHLACPA--SP----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        97 ~~d~vi~~a~~~--~~----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      ++|++||+||..  ..    +...++++..+++|+.++..+++++    ++.+. +||++||...+...           
T Consensus        85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~-----------  153 (264)
T 3i4f_A           85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP-----------  153 (264)
T ss_dssp             CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC-----------
T ss_pred             CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC-----------
Confidence            899999999942  11    1223456788999999999999987    55666 99999987544211           


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+.+.++.+   .++++++++||.++++....    ............         ....
T Consensus       154 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~---------~p~~  217 (264)
T 3i4f_A          154 ---GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEA----TIQEARQLKEHN---------TPIG  217 (264)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSC----CHHHHHHC-----------------
T ss_pred             ---CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchh----ccHHHHHHHhhc---------CCCC
Confidence               3345578999999999999998877   58999999999999876332    222222211111         1223


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+.+++|+|+++++++
T Consensus       218 r~~~~~dva~~v~~l~  233 (264)
T 3i4f_A          218 RSGTGEDIARTISFLC  233 (264)
T ss_dssp             CCCCHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            4679999999999876

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.92  E-value=5.7e-24  Score=168.66  Aligned_cols=199  Identities=16%  Similarity=0.073  Sum_probs=143.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +|+++||||+|+||++++++|+++|++ |++++|+........+....  ..++.++.+|+++.+            +.+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDR-VAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999998 99998864332221111101  246889999999977            248


Q ss_pred             cCEEEEccCCCCccc-------cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           98 VDQIYHLACPASPIF-------YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      +|+|||+||......       ..++++..+++|+.++..+++.+    ++.+. +||++||...+.             
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-------------  147 (250)
T 2cfc_A           81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLV-------------  147 (250)
T ss_dssp             CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------------
T ss_pred             CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc-------------
Confidence            999999999754321       23456778899999998776665    34566 999999987654             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+++.++.+.   +++++++||++++++.....  .....+........+         ..
T Consensus       148 ---~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~~---------~~  213 (250)
T 2cfc_A          148 ---AFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWR--LDQPELRDQVLARIP---------QK  213 (250)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHH--HTSHHHHHHHHTTCT---------TC
T ss_pred             ---CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccc--cCCHHHHHHHHhcCC---------CC
Confidence               23345689999999999999988765   89999999999999863210  000122233333222         12


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++++|+|+++++++
T Consensus       214 ~~~~~~dva~~~~~l~  229 (250)
T 2cfc_A          214 EIGTAAQVADAVMFLA  229 (250)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            4679999999998875

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.92  E-value=4.3e-24  Score=172.18  Aligned_cols=211  Identities=16%  Similarity=0.103  Sum_probs=148.0

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC---------Ccchhh---hcc--CCCceeEeecccC
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG---------SKDNLR---KWI--GHPRFELIRHDVT   91 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~---------~~~~~~---~~~--~~~~~~~~~~dl~   91 (259)
                      .+..+++++++||||+|+||+++++.|+++|++ |++++|+...         ..+.++   ...  ...++.++.+|++
T Consensus         9 ~~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~   87 (280)
T 3pgx_A            9 QAGSLQGRVAFITGAARGQGRSHAVRLAAEGAD-IIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVR   87 (280)
T ss_dssp             --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred             cccccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence            344577899999999999999999999999998 8888874211         111111   111  1357888999999


Q ss_pred             ccc------------cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhC-C-eEEEEecce
Q 025022           92 EPL------------LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSE  149 (259)
Q Consensus        92 ~~~------------~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-~~i~~Ss~~  149 (259)
                      +.+            +.++|++||+||......    ..++++..+++|+.++.++++++.    +.+ . +||++||..
T Consensus        88 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~  167 (280)
T 3pgx_A           88 DDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSA  167 (280)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchh
Confidence            987            458999999999765322    234567789999999999988873    343 3 899999987


Q ss_pred             eecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHH
Q 025022          150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA  226 (259)
Q Consensus       150 ~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~  226 (259)
                      .+.                +......|+.+|.+.+.+.+.++.+   +++++++++||.+.+|....   ..........
T Consensus       168 ~~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~---~~~~~~~~~~  228 (280)
T 3pgx_A          168 GLK----------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEP---EAMMEIFARH  228 (280)
T ss_dssp             GTS----------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCH---HHHHHHHHHC
T ss_pred             hcc----------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccch---hhhhhhhhcC
Confidence            654                3344578999999999999999877   58999999999999986321   1111111111


Q ss_pred             -HcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          227 -IRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       227 -~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                       .....+... ..... .+++++|+|+++++++
T Consensus       229 ~~~~~~~~~~-~~~~~-r~~~p~dvA~~v~~L~  259 (280)
T 3pgx_A          229 PSFVHSFPPM-PVQPN-GFMTADEVADVVAWLA  259 (280)
T ss_dssp             GGGGGGSCCB-TTBCS-SCBCHHHHHHHHHHHH
T ss_pred             chhhhhhhhc-ccCCC-CCCCHHHHHHHHHHHh
Confidence             001111111 11222 4889999999999876

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.92  E-value=2.8e-24  Score=171.66  Aligned_cols=197  Identities=14%  Similarity=0.012  Sum_probs=140.2

Q ss_pred             cccccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc--------
Q 025022           24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL--------   94 (259)
Q Consensus        24 ~~~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~--------   94 (259)
                      ..++..+++++++||||+|+||++++++|+++|++ |++++|+........+... ...++.++.+|+++.+        
T Consensus        21 ~~~m~~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   99 (262)
T 3rkr_A           21 DKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATG   99 (262)
T ss_dssp             ----CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             cchhhccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHH
Confidence            33455677899999999999999999999999998 9999886543222222211 1357889999999987        


Q ss_pred             ----cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCC
Q 025022           95 ----LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 ----~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                          +.++|+|||+||....     .....+++..+++|+.++..+++++..    .+. +||++||...+.        
T Consensus       100 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------  171 (262)
T 3rkr_A          100 VLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN--------  171 (262)
T ss_dssp             HHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSC--------
T ss_pred             HHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcC--------
Confidence                3579999999997321     122345678999999999999888643    444 999999987654        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (259)
                              +..+...|+.+|.+.+.+++.++.+   .++++++++||.+..+....        +    ...        
T Consensus       172 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------~----~~~--------  223 (262)
T 3rkr_A          172 --------PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVG--------L----SAK--------  223 (262)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-------------------------------
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccc--------c----ccc--------
Confidence                    4445578999999999999998876   58999999999887754210        0    000        


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                       .....++..+|+|+++++++
T Consensus       224 -~~~~~~~~p~dvA~~v~~l~  243 (262)
T 3rkr_A          224 -KSALGAIEPDDIADVVALLA  243 (262)
T ss_dssp             ------CCCHHHHHHHHHHHH
T ss_pred             -cccccCCCHHHHHHHHHHHh
Confidence             11234678999999998876

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.92  E-value=8.6e-24  Score=164.61  Aligned_cols=179  Identities=16%  Similarity=0.234  Sum_probs=129.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHH-hcCCCeEEEEcCCCC-CCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      +++|+||||+|+||++++++|+ +.|++ |+++.|+.. ...+.. .  ...++.++.+|+++.+     +.++|+|||+
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~-V~~~~r~~~~~~~~~~-~--~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~   80 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMH-ITLYGRQLKTRIPPEI-I--DHERVTVIEGSFQNPGXLEQAVTNAEVVFVG   80 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCE-EEEEESSHHHHSCHHH-H--TSTTEEEEECCTTCHHHHHHHHTTCSEEEES
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCce-EEEEecCccccchhhc-c--CCCceEEEECCCCCHHHHHHHHcCCCEEEEc
Confidence            4569999999999999999999 89998 999998644 222111 0  2357899999999877     6789999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC-chHHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS-CYDEGKRV  182 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~-~Y~~sK~~  182 (259)
                      ||..               |+. +.++++++++.+. +||++||..+|....... .+  |    ...... .|..+|..
T Consensus        81 ag~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~-~~--~----~~~~~~~~y~~~K~~  137 (221)
T 3r6d_A           81 AMES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVAL-EK--W----TFDNLPISYVQGERQ  137 (221)
T ss_dssp             CCCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHH-HH--H----HHHTSCHHHHHHHHH
T ss_pred             CCCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCccc-cc--c----cccccccHHHHHHHH
Confidence            9843               333 8899999999988 999999998876421100 00  0    001112 79999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc-eeeeeeeHHHHHHHHHhhh
Q 025022          183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT-QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       183 ~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~D~a~~~~~~l  258 (259)
                      .|.++    +..+++++++||+.++++.....                 ........ ....+++.+|+|+++++++
T Consensus       138 ~e~~~----~~~~i~~~~vrpg~v~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~dvA~~~~~l~  193 (221)
T 3r6d_A          138 ARNVL----RESNLNYTILRLTWLYNDPEXTD-----------------YELIPEGAQFNDAQVSREAVVKAIFDIL  193 (221)
T ss_dssp             HHHHH----HHSCSEEEEEEECEEECCTTCCC-----------------CEEECTTSCCCCCEEEHHHHHHHHHHHH
T ss_pred             HHHHH----HhCCCCEEEEechhhcCCCCCcc-----------------eeeccCCccCCCceeeHHHHHHHHHHHH
Confidence            99887    45799999999999999731110                 11111111 1224899999999999886

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.92  E-value=8.7e-25  Score=173.99  Aligned_cols=202  Identities=16%  Similarity=0.139  Sum_probs=148.9

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------   94 (259)
                      ..+++++++||||+|+||++++++|+++|++ |++++|+.....+..+... ...++.++.+|+++.+            
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999 9999886443222222111 1357889999999987            


Q ss_pred             cCCcCEEEEccCCCCcc---ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           95 LIEVDQIYHLACPASPI---FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +.++|++||+||.....   ...++++..+++|+.++.++++++.    +.+. +||++||...+.              
T Consensus        87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------  152 (256)
T 3gaf_A           87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN--------------  152 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC--------------
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC--------------
Confidence            45899999999976542   2334567889999999999998874    4455 999999987654              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.+.+.+.++.+.   ++++..++||.+.++.....   .............+         ...
T Consensus       153 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~p---------~~r  218 (256)
T 3gaf_A          153 --TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATV---LTPEIERAMLKHTP---------LGR  218 (256)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHH---CCHHHHHHHHTTCT---------TSS
T ss_pred             --CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhc---cCHHHHHHHHhcCC---------CCC
Confidence              33455789999999999999998764   79999999999988642100   00122223333222         234


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +.+++|+|+++++++
T Consensus       219 ~~~~~dva~~~~~L~  233 (256)
T 3gaf_A          219 LGEAQDIANAALFLC  233 (256)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHc
Confidence            678999999999876

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.92  E-value=2.7e-24  Score=172.28  Aligned_cols=200  Identities=15%  Similarity=0.077  Sum_probs=146.4

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc---------
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~---------   94 (259)
                      ....+++++++||||+|+||+++++.|+++|++ |+++.|+.....+.+...+  ...++.++.+|+++.+         
T Consensus        22 ~~~~l~~k~vlVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~  100 (269)
T 4dmm_A           22 TALPLTDRIALVTGASRGIGRAIALELAAAGAK-VAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAV  100 (269)
T ss_dssp             --CTTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            344567899999999999999999999999998 8887774332222222211  1347889999999987         


Q ss_pred             ---cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                         +.++|++||+||.....    ...++++..+++|+.++.++++++.    +.+. +||++||...+.          
T Consensus       101 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------  170 (269)
T 4dmm_A          101 IERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEM----------  170 (269)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH----------
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC----------
Confidence               45899999999976532    2234567889999999999988863    3455 999999987654          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +......|+.+|.+.+.+.+.++.+   +++++++++||.+.++...    ....   .......+        
T Consensus       171 ------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~----~~~~---~~~~~~~p--------  229 (269)
T 4dmm_A          171 ------GNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTS----ELAA---EKLLEVIP--------  229 (269)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSC----HHHH---HHHGGGCT--------
T ss_pred             ------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCcccc----cccH---HHHHhcCC--------
Confidence                  2334567999999999999998876   4899999999999987632    1111   22222222        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+.+++|+|+++++++
T Consensus       230 -~~r~~~~~dvA~~v~~l~  247 (269)
T 4dmm_A          230 -LGRYGEAAEVAGVVRFLA  247 (269)
T ss_dssp             -TSSCBCHHHHHHHHHHHH
T ss_pred             -CCCCCCHHHHHHHHHHHh
Confidence             124678999999998875

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.92  E-value=1.3e-23  Score=168.09  Aligned_cols=196  Identities=13%  Similarity=0.082  Sum_probs=143.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+..    .++.. ...++.++.+|+++.+            +.+
T Consensus        14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~----~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   87 (266)
T 3p19_A           14 SMKKLVVITGASSGIGEAIARRFSEEGHP-LLLLARRVE----RLKAL-NLPNTLCAQVDVTDKYTFDTAITRAEKIYGP   87 (266)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCHH----HHHTT-CCTTEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHH----HHHHh-hcCCceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            45789999999999999999999999999 999888532    22222 2247889999999977            358


Q ss_pred             cCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||......    ..++++..+++|+.++.++++++    ++.+. +||++||...+.                
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~----------------  151 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK----------------  151 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC----------------
Confidence            999999999764321    23446678999999999977765    34555 999999987654                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +..+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++..................    .       ....++
T Consensus       152 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~----~-------~~~r~~  220 (266)
T 3p19_A          152 TFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWR----V-------DMGGVL  220 (266)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHH----H-------HTTCCB
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhhc----c-------cccCCC
Confidence            3344568999999999999999876   4899999999999987643221111111111100    0       112367


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      +++|+|+++++++
T Consensus       221 ~pedvA~av~~l~  233 (266)
T 3p19_A          221 AADDVARAVLFAY  233 (266)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            8999999999875

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.92  E-value=3.4e-24  Score=174.65  Aligned_cols=202  Identities=13%  Similarity=0.034  Sum_probs=144.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------   94 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+........+.+..  ..++.++.+|+++.+            
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV  101 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999998 99998864332222221110  246889999999876            


Q ss_pred             cCCcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHHH-----hCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 LIEVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAKR-----VGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +.++|+|||+||....    .....+++..+++|+.++.++++++.+     .+. +||++||...+.            
T Consensus       102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~------------  169 (302)
T 1w6u_A          102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET------------  169 (302)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH------------
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc------------
Confidence            4578999999996543    122345678899999999999887743     234 999999987664            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecCCce
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID-DGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                          +..+...|+.+|.+.+.+++.++.+   ++++++++|||+++++..... .....  .........+         
T Consensus       170 ----~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~--~~~~~~~~~p---------  234 (302)
T 1w6u_A          170 ----GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGT--FEKEMIGRIP---------  234 (302)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSH--HHHHHHTTCT---------
T ss_pred             ----CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchh--hHHHHHhcCC---------
Confidence                3344568999999999999999877   689999999999998742111 01010  1112222222         


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+++++|+|+++++++
T Consensus       235 ~~~~~~~~dva~~~~~l~  252 (302)
T 1w6u_A          235 CGRLGTVEELANLAAFLC  252 (302)
T ss_dssp             TSSCBCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHc
Confidence            124678999999998875

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.92  E-value=2.9e-24  Score=173.03  Aligned_cols=205  Identities=13%  Similarity=0.029  Sum_probs=149.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+... ...++.++.+|+++.+            +
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAK-VVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            467899999999999999999999999998 9999886543322222221 1357889999999987            4


Q ss_pred             CCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||+||....     ....++++..+++|+.++.++++++.+    .+. +||++||...+..            
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------  151 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA------------  151 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB------------
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC------------
Confidence            589999999996532     123345778999999999999888743    345 9999999876521            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++.....................+         ..
T Consensus       152 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p---------~~  219 (280)
T 3tox_A          152 ---GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHA---------LK  219 (280)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTST---------TS
T ss_pred             ---CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCc---------cC
Confidence               33445789999999999999998775   8999999999999886322000001122222222222         22


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+.+++|+|+++++++
T Consensus       220 r~~~pedvA~~v~~L~  235 (280)
T 3tox_A          220 RIARPEEIAEAALYLA  235 (280)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            4678999999999876

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.92  E-value=5.5e-25  Score=175.61  Aligned_cols=204  Identities=14%  Similarity=0.083  Sum_probs=145.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++|+++||||+|+||++++++|+++|++ |++++|+.....+..++.. ...++.++.+|+++.+            +
T Consensus         6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            6 NLEGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            367899999999999999999999999998 9999886433222222111 1246888999999976            3


Q ss_pred             -CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 -IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 -~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                       .++|++||+||.....    ...++++..+++|+.++.++++++.    +.+. +||++||...+.             
T Consensus        85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------  151 (260)
T 2ae2_A           85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL-------------  151 (260)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS-------------
T ss_pred             CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc-------------
Confidence             6899999999975431    2234567789999999999998874    4555 999999987554             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNID-DGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++..... ........+.......+         .
T Consensus       152 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~  219 (260)
T 2ae2_A          152 ---AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA---------L  219 (260)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST---------T
T ss_pred             ---CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCC---------C
Confidence               23344679999999999999998764   89999999999987631100 00000010111222111         2


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+++++|+|+++++++
T Consensus       220 ~~~~~~~dvA~~v~~l~  236 (260)
T 2ae2_A          220 RRMGEPKELAAMVAFLC  236 (260)
T ss_dssp             CSCBCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            34789999999998875

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.92  E-value=4.6e-24  Score=169.14  Aligned_cols=199  Identities=15%  Similarity=0.041  Sum_probs=140.1

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcC
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVD   99 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d   99 (259)
                      ...++++|+||||+|+||+++++.|+++|++ |++++|+.....+..+..  ..++.++.+|+.+.+        ..++|
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id   86 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSK-VIISGSNEEKLKSLGNAL--KDNYTIEVCNLANKEECSNLISKTSNLD   86 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHh--ccCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence            3456899999999999999999999999998 999988543322222222  247888999999877        45799


Q ss_pred             EEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          100 QIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       100 ~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ++||+||....    .....+++..+++|+.++.++++++.    +.+. +||++||...+.                +.
T Consensus        87 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~  150 (249)
T 3f9i_A           87 ILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA----------------GN  150 (249)
T ss_dssp             EEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC------------------CC
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc----------------CC
Confidence            99999997643    23346678999999999999988763    3455 999999987664                33


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      .+...|+.+|.+.+.+.+.++.+   .++++++++||.+.++.....    ............+         ...+.++
T Consensus       151 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~~---------~~~~~~~  217 (249)
T 3f9i_A          151 PGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKL----NEKQREAIVQKIP---------LGTYGIP  217 (249)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------C----CHHHHHHHHHHCT---------TCSCBCH
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCccccc----CHHHHHHHHhcCC---------CCCCcCH
Confidence            44578999999999999998876   479999999999988753321    1222222222221         2347789


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|+|+++++++
T Consensus       218 ~dva~~~~~l~  228 (249)
T 3f9i_A          218 EDVAYAVAFLA  228 (249)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999998875

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.92  E-value=2.6e-24  Score=171.13  Aligned_cols=202  Identities=16%  Similarity=0.140  Sum_probs=149.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||++++++|+++|++ |++++|+.....+..++.  ..++.++.+|+++.+            +.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAE-VLLTGRNESNIARIREEF--GPRVHALRSDIADLNEIAVLGAAAGQTLG   81 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999998 999988644322222222  247889999999987            45


Q ss_pred             CcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      ++|++||+||......    ..++++..+++|+.++..+++++.+.   +.+||++||...+.                +
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~  145 (255)
T 4eso_A           82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG----------------G  145 (255)
T ss_dssp             SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS----------------B
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC----------------C
Confidence            8999999999765322    33456788999999999999998764   22999999987654                3


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      ..+...|+.+|.+.+.+.+.++.+.   +++++.++||.+.+|......  ......+........++         ..+
T Consensus       146 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~---------~r~  216 (255)
T 4eso_A          146 HPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPM---------KRN  216 (255)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTT---------SSC
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCC---------CCC
Confidence            3455789999999999999998774   899999999999988643211  11122222222222221         235


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      .+++|+|+++++++
T Consensus       217 ~~pedvA~~v~~L~  230 (255)
T 4eso_A          217 GTADEVARAVLFLA  230 (255)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHc
Confidence            68999999998875

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.92  E-value=5.8e-24  Score=169.71  Aligned_cols=199  Identities=15%  Similarity=0.071  Sum_probs=143.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC-CCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++++||||+|+||++++++|+++|++ |+++.| +........+... ...++.++.+|+++.+            +
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (261)
T 1gee_A            5 LEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            66899999999999999999999999998 888888 3222111111111 1246888999999876            2


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|+|||+||.....    ....+++..+++|+.++.++++++.+    .+ . +||++||...+.             
T Consensus        84 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~-------------  150 (261)
T 1gee_A           84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI-------------  150 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC-------------
Confidence            4899999999975431    12345677899999999988877643    34 4 999999976543             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCce
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVV--SNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  240 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   +++++++||++++++...    ...  ...........+         
T Consensus       151 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~---------  214 (261)
T 1gee_A          151 ---PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINA----EKFADPEQRADVESMIP---------  214 (261)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGH----HHHHSHHHHHHHHTTCT---------
T ss_pred             ---CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhh----hcccChhHHHHHHhcCC---------
Confidence               34455789999999999999888764   899999999999997521    010  122222222211         


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+++++|+|+++++++
T Consensus       215 ~~~~~~~~dva~~~~~l~  232 (261)
T 1gee_A          215 MGYIGEPEEIAAVAAWLA  232 (261)
T ss_dssp             TSSCBCHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHh
Confidence            124789999999998875

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.92  E-value=6.7e-25  Score=178.57  Aligned_cols=188  Identities=18%  Similarity=0.176  Sum_probs=138.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCCCCc-chhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      +|+|+||||||+||++++++|+++| ++ |+++.|+..... ..+.    ..+++++.+|+.+.+     +.++|+|||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~-V~~~~R~~~~~~~~~l~----~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   79 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFK-VRVVTRNPRKKAAKELR----LQGAEVVQGDQDDQVIMELALNGAYATFIV   79 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSE-EEEEESCTTSHHHHHHH----HTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCce-EEEEEcCCCCHHHHHHH----HCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence            5799999999999999999999998 87 999998654321 1111    247889999999977     6789999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA  183 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~  183 (259)
                      ++....        ...+.|+.++.+++++|++.++ +||++|+..+++...              ..+...|..+|...
T Consensus        80 a~~~~~--------~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~--------------~~~~~~y~~sK~~~  137 (299)
T 2wm3_A           80 TNYWES--------CSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTA--------------GRLAAAHFDGKGEV  137 (299)
T ss_dssp             CCHHHH--------TCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTT--------------TSCCCHHHHHHHHH
T ss_pred             CCCCcc--------ccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCC--------------CcccCchhhHHHHH
Confidence            974311        0134678899999999999998 999988877775311              11236799999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHH-HHcCCCeE-EecCCceeeeeeeHHHHHHHHHhhh
Q 025022          184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQ-AIRGEPLT-VQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       184 e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |.+++    ..+++++++||+++||+....        +... ...+.... ..+.++..++|++++|+|+++..++
T Consensus       138 e~~~~----~~gi~~~ilrp~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l  202 (299)
T 2wm3_A          138 EEYFR----DIGVPMTSVRLPCYFENLLSH--------FLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLL  202 (299)
T ss_dssp             HHHHH----HHTCCEEEEECCEEGGGGGTT--------TCCEECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHH
T ss_pred             HHHHH----HCCCCEEEEeecHHhhhchhh--------cCCcccCCCCEEEEEecCCCCccceecHHHHHHHHHHHH
Confidence            99875    358999999999999974221        1111 11222211 1234677889999999999998765

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.92  E-value=6.7e-24  Score=168.83  Aligned_cols=198  Identities=15%  Similarity=0.028  Sum_probs=143.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+..  ....+.... ..++.++.+|+++.+            +.
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGAN-IVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFG   78 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            56899999999999999999999999998 999888654  222222111 246888999999977            34


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....    ....+++..+++|+.++..+++++    ++.+. +||++||...+.               
T Consensus        79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------  143 (255)
T 2q2v_A           79 GVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLV---------------  143 (255)
T ss_dssp             SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhcc---------------
Confidence            899999999975432    123456788999999877776655    55666 999999987654               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHH---HHH---H----HHHHcCCCeEE
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVV---SNF---I----AQAIRGEPLTV  234 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~---~~~---~----~~~~~~~~~~~  234 (259)
                       +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+++|...    ...   ...   .    ....       
T Consensus       144 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~-------  211 (255)
T 2q2v_A          144 -GSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQ----KQIDDRAANGGDPLQAQHDLL-------  211 (255)
T ss_dssp             -CCTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHH----HHHHHHHHHTCCHHHHHHHHH-------
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchh----hhcccccccccchHHHHHHHH-------
Confidence             22345679999999999999998774   799999999999987421    011   000   0    1110       


Q ss_pred             ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          235 QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       235 ~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                       ........+++++|+|+++++++
T Consensus       212 -~~~~p~~~~~~~~dvA~~~~~l~  234 (255)
T 2q2v_A          212 -AEKQPSLAFVTPEHLGELVLFLC  234 (255)
T ss_dssp             -TTTCTTCCCBCHHHHHHHHHHHT
T ss_pred             -hccCCCCCCcCHHHHHHHHHHHh
Confidence             11112335889999999999875

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.92  E-value=2.5e-24  Score=173.03  Aligned_cols=203  Identities=14%  Similarity=0.075  Sum_probs=144.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++|+++||||+|+||++++++|+++|++ |+++.|+.....+.+...+  ...++.++.+|+++.+            +
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~~-v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   97 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF   97 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            66899999999999999999999999998 8888873222111111111  1246888999999877            2


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceee-cCCCCCCCCCCCcCCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY-GDPLVHPQDESYWGNV  167 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~-~~~~~~~~~e~~~~~~  167 (259)
                      .++|+|||+||.....    ....+++..+++|+.++.++++++.+.   +.+||++||...+ .               
T Consensus        98 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~---------------  162 (274)
T 1ja9_A           98 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT---------------  162 (274)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC---------------
T ss_pred             CCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccC---------------
Confidence            4899999999975431    223345778999999999999988765   3499999998766 3               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCc--------cHH-HHHHHHHHcCCCeEEe
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDG--------RVV-SNFIAQAIRGEPLTVQ  235 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~  235 (259)
                       +..+...|+.+|.+.|.+++.++.+.   ++++++++|+.++++.......        ... .........+.     
T Consensus       163 -~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  236 (274)
T 1ja9_A          163 -GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMN-----  236 (274)
T ss_dssp             -SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTS-----
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhcC-----
Confidence             22344679999999999999988764   8999999999998864210000        000 11112222221     


Q ss_pred             cCCceeeeeeeHHHHHHHHHhhh
Q 025022          236 APGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       236 ~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ....+++++|+|+++++++
T Consensus       237 ----~~~~~~~~~dva~~i~~l~  255 (274)
T 1ja9_A          237 ----PLKRIGYPADIGRAVSALC  255 (274)
T ss_dssp             ----TTSSCBCHHHHHHHHHHHH
T ss_pred             ----CCCCccCHHHHHHHHHHHh
Confidence                2345889999999998875

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.92  E-value=4.8e-24  Score=170.44  Aligned_cols=198  Identities=16%  Similarity=0.042  Sum_probs=143.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+........+. +. .++.++.+|+++.+            +.
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~-~~-~~~~~~~~D~~d~~~v~~~~~~~~~~~g   85 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGAT-VAIADLDVMAAQAVVAG-LE-NGGFAVEVDVTKRASVDAAMQKAIDALG   85 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHT-CT-TCCEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHH-Hh-cCCeEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            356889999999999999999999999998 99998864322222221 11 26788999999877            34


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|+|||+||.....    ...++++..+++|+.++.++++++.+    .+ . +||++||...+.              
T Consensus        86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  151 (263)
T 3ak4_A           86 GFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV--------------  151 (263)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS--------------
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc--------------
Confidence            899999999965432    12345678899999999999887754    34 4 999999987553              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHH-----------HHHHHHHHcCCCe
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVV-----------SNFIAQAIRGEPL  232 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~-----------~~~~~~~~~~~~~  232 (259)
                        +..+...|+.+|.+.+.+.+.++.+.   ++++++++|+.++++...    ...           ...........  
T Consensus       152 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--  223 (263)
T 3ak4_A          152 --GAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQE----REIIWEAELRGMTPEAVRAEYVSLT--  223 (263)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHH----HHHHHHHHHHTSCHHHHHHHHHHTC--
T ss_pred             --CCCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhh----hhccccccccccCcHHHHHHHHhcC--
Confidence              22344679999999999999988764   899999999999986421    010           11111111111  


Q ss_pred             EEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          233 TVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       233 ~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                             ....+++++|+|+++++++
T Consensus       224 -------p~~~~~~~~dvA~~v~~l~  242 (263)
T 3ak4_A          224 -------PLGRIEEPEDVADVVVFLA  242 (263)
T ss_dssp             -------TTCSCBCHHHHHHHHHHHH
T ss_pred             -------CCCCCcCHHHHHHHHHHHh
Confidence                   1234789999999998875

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.92  E-value=4e-24  Score=172.47  Aligned_cols=202  Identities=17%  Similarity=0.082  Sum_probs=146.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC----CCceeEeecccCccc----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPL----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~dl~~~~----------   94 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++...    ..++.++.+|+++.+          
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   86 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAS-VMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVT   86 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999999999998 99998865433222222211    126889999999987          


Q ss_pred             --cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                        +.++|++||+||....     +...++++..+++|+.++.++++++.+    .+. +||++||...+.          
T Consensus        87 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------  156 (281)
T 3svt_A           87 AWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN----------  156 (281)
T ss_dssp             HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS----------
T ss_pred             HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC----------
Confidence              4589999999996321     122345678899999999999987754    344 999999987765          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++......  .............+        
T Consensus       157 ------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~--~~~~~~~~~~~~~p--------  220 (281)
T 3svt_A          157 ------THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAIT--ESAELSSDYAMCTP--------  220 (281)
T ss_dssp             ------CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH--TCHHHHHHHHHHCS--------
T ss_pred             ------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcc--cCHHHHHHHHhcCC--------
Confidence                  33445789999999999999998765   599999999999987522100  00112222222222        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+.+++|+|+++++++
T Consensus       221 -~~r~~~~~dva~~~~~l~  238 (281)
T 3svt_A          221 -LPRQGEVEDVANMAMFLL  238 (281)
T ss_dssp             -SSSCBCHHHHHHHHHHHH
T ss_pred             -CCCCCCHHHHHHHHHHHh
Confidence             124568999999998875

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.92  E-value=8.4e-24  Score=169.12  Aligned_cols=199  Identities=15%  Similarity=0.130  Sum_probs=144.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++++++||||+|+||+++++.|+++|++ |++++|+.....+..++.  ..++.++.+|+++.+            +.
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKFG   85 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCcHhHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            367899999999999999999999999998 999998765433333322  247889999999977            24


Q ss_pred             CcCEEEEccCCCCcc----------ccccChhHHHHHhhhhHHHHHHHHHHh----------CC-eEEEEecceeecCCC
Q 025022           97 EVDQIYHLACPASPI----------FYKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPL  155 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-~~i~~Ss~~~~~~~~  155 (259)
                      ++|+|||+||.....          ....+++..+++|+.++.++++++.+.          +. +||++||...+.   
T Consensus        86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---  162 (265)
T 2o23_A           86 RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE---  162 (265)
T ss_dssp             CCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH---
T ss_pred             CCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC---
Confidence            899999999975431          123446788999999999999988764          55 999999987665   


Q ss_pred             CCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe
Q 025022          156 VHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPL  232 (259)
Q Consensus       156 ~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~  232 (259)
                                   +..+...|+.+|.+.+.+.+.++.+   .++++++++||.+.++....    .............+.
T Consensus       163 -------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~~  225 (265)
T 2o23_A          163 -------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS----LPEKVCNFLASQVPF  225 (265)
T ss_dssp             -------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--------------CHHHHTCSS
T ss_pred             -------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccc----cCHHHHHHHHHcCCC
Confidence                         2334568999999999999988776   48999999999998875321    101111111111111


Q ss_pred             EEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          233 TVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       233 ~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                              ...+++++|+|+++++++
T Consensus       226 --------~~~~~~~~dva~~~~~l~  243 (265)
T 2o23_A          226 --------PSRLGDPAEYAHLVQAII  243 (265)
T ss_dssp             --------SCSCBCHHHHHHHHHHHH
T ss_pred             --------cCCCCCHHHHHHHHHHHh
Confidence                    023679999999998864

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.92  E-value=3.9e-24  Score=170.62  Aligned_cols=192  Identities=17%  Similarity=0.098  Sum_probs=141.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+.. . .++.++.+|+++.+            +.+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   81 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDILDEEGKAMAAEL-A-DAARYVHLDVTQPAQWKAAVDTAVTAFGG   81 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHT-G-GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh-h-cCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            56889999999999999999999999998 999888643322221221 1 24788999999877            348


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ...++++..+++|+.++.++++++    ++.+. +||++||...+.                
T Consensus        82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------  145 (260)
T 1nff_A           82 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA----------------  145 (260)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcC----------------
Confidence            99999999976432    123456778999999997666554    45566 999999987654                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +..+...|+.+|.+.+.+.+.++.+   ++++++++|||.++++.... .             ...+.    ......++
T Consensus       146 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~-------------~~~~~----~~~~~~~~  207 (260)
T 1nff_A          146 GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW-V-------------PEDIF----QTALGRAA  207 (260)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT-S-------------CTTCS----CCSSSSCB
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCcccc-c-------------hhhHH----hCccCCCC
Confidence            2234468999999999999998876   58999999999999975220 0             00000    01123478


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      +++|+|+++++++
T Consensus       208 ~~~dvA~~v~~l~  220 (260)
T 1nff_A          208 EPVEVSNLVVYLA  220 (260)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            8999999998875

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.92  E-value=4.7e-24  Score=168.97  Aligned_cols=198  Identities=15%  Similarity=0.069  Sum_probs=147.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+..  ......+.+|+++.+            +.
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAK-VIGTATSESGAQAISDYL--GDNGKGMALNVTNPESIEAVLKAITDEFG   82 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh--cccceEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999 999988644332222222  135778999999987            45


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....    ...++++..+++|+.++.++++++.+    .+. +||++||...+.               
T Consensus        83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------------  147 (248)
T 3op4_A           83 GVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM---------------  147 (248)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC---------------
Confidence            899999999976532    23345678999999999999988743    455 999999986654               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+.+.++.+   ++++++.++||.+..+......    ...........+         ...+
T Consensus       148 -~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~----~~~~~~~~~~~p---------~~r~  213 (248)
T 3op4_A          148 -GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALN----DEQRTATLAQVP---------AGRL  213 (248)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSC----HHHHHHHHHTCT---------TCSC
T ss_pred             -CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcC----HHHHHHHHhcCC---------CCCC
Confidence             3345578999999999999998876   4799999999999887543211    122222222222         2246


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      .+++|+|+++++++
T Consensus       214 ~~p~dva~~v~~L~  227 (248)
T 3op4_A          214 GDPREIASAVAFLA  227 (248)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHc
Confidence            78999999998875

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.92  E-value=6.9e-24  Score=169.78  Aligned_cols=203  Identities=16%  Similarity=0.092  Sum_probs=145.6

Q ss_pred             ccccCCCEEEEEcCch-hhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc---------
Q 025022           27 KFFQSNMRILVTGGAG-FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG-~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~---------   94 (259)
                      ...+++++++||||+| .||++++++|+++|++ |++++|+.....+..+++.  ...++.++.+|+++.+         
T Consensus        17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHH
Confidence            3446789999999998 6999999999999998 9999886543333222221  1257899999999987         


Q ss_pred             ---cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh-----CC-eEEEEecceeecCCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV-----GA-RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~-~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                         +.++|++||+||.....    ...++++..+++|+.++.++++++...     +. +||++||...+.         
T Consensus        96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~---------  166 (266)
T 3o38_A           96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR---------  166 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC---------
T ss_pred             HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC---------
Confidence               35899999999975432    123456778999999999999887653     44 899999987553         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                             +..+...|+.+|.+.+.+.+.++.+   .++++..++||.+.++.....   .........         ...
T Consensus       167 -------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~---------~~~  227 (266)
T 3o38_A          167 -------AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKT---SSSELLDRL---------ASD  227 (266)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-----------------------------C
T ss_pred             -------CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhcc---CcHHHHHHH---------Hhc
Confidence                   3345578999999999999998876   589999999999988652211   001111111         111


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .....+.+++|+|+++++++
T Consensus       228 ~~~~r~~~~~dva~~i~~l~  247 (266)
T 3o38_A          228 EAFGRAAEPWEVAATIAFLA  247 (266)
T ss_dssp             CTTSSCCCHHHHHHHHHHHH
T ss_pred             CCcCCCCCHHHHHHHHHHHc
Confidence            22345779999999999875

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.92  E-value=1e-23  Score=166.84  Aligned_cols=201  Identities=15%  Similarity=0.075  Sum_probs=144.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQ  100 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~  100 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+ +.   +..++.++.+|+++.+        +.++|+
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~-~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~   77 (246)
T 2ag5_A            3 RLDGKVIILTAAAQGIGQAAALAFAREGAK-VIATDINESKLQE-LE---KYPGIQTRVLDVTKKKQIDQFANEVERLDV   77 (246)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHGG-GG---GSTTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHH-HH---hccCceEEEeeCCCHHHHHHHHHHhCCCCE
Confidence            367899999999999999999999999998 9999885432221 11   1236888999999876        568999


Q ss_pred             EEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          101 IYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       101 vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      +||+||.....    ...++++..+++|+.++.++++++.    +.+. +||++||...+..               .+.
T Consensus        78 lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~---------------~~~  142 (246)
T 2ag5_A           78 LFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVK---------------GVV  142 (246)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTB---------------CCT
T ss_pred             EEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcC---------------CCC
Confidence            99999976432    1234567788999999999988875    3455 9999999865432               111


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      +...|+.+|.+.+.+.+.++.+.   +++++++||+++++|......  ...............+         ...+++
T Consensus       143 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  213 (246)
T 2ag5_A          143 NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQK---------TGRFAT  213 (246)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCT---------TSSCEE
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCC---------CCCCCC
Confidence            45689999999999999998764   899999999999997421000  0000111222222211         123679


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|+|+++++++
T Consensus       214 ~~dvA~~v~~l~  225 (246)
T 2ag5_A          214 AEEIAMLCVYLA  225 (246)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.92  E-value=9.2e-25  Score=175.82  Aligned_cols=200  Identities=16%  Similarity=0.085  Sum_probs=144.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||+++++.|+++|++ |++++|+.....+..+... ...++.++.+|+++.+            +
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLR-VFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY   97 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            367889999999999999999999999998 9999886433222111111 1246888999999877            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh------CC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV------GA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      .++|++||+||.....    ....+++..+++|+.++.++++++.+.      +. +||++||...+.            
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~------------  165 (277)
T 2rhc_B           98 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ------------  165 (277)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc------------
Confidence            5899999999975432    122346788999999999999987554      54 999999986543            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHH-----------HHHHHHHcCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVS-----------NFIAQAIRGE  230 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~-----------~~~~~~~~~~  230 (259)
                          +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++...    ....           ..........
T Consensus       166 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  237 (277)
T 2rhc_B          166 ----GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAA----SVREHYSDIWEVSTEEAFDRITARV  237 (277)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHH----HHHHHHHHHHTCCHHHHHHHHHHHS
T ss_pred             ----CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhh----hhhhhcccccccchHHHHHHHHhcC
Confidence                22344679999999999999988764   799999999999886411    0110           1111111111


Q ss_pred             CeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          231 PLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       231 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                               ....+++++|+|+++++++
T Consensus       238 ---------p~~r~~~~~dvA~~v~~l~  256 (277)
T 2rhc_B          238 ---------PIGRYVQPSEVAEMVAYLI  256 (277)
T ss_dssp             ---------TTSSCBCHHHHHHHHHHHH
T ss_pred             ---------CCCCCcCHHHHHHHHHHHh
Confidence                     1234789999999999875

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.92  E-value=4.9e-24  Score=171.13  Aligned_cols=202  Identities=15%  Similarity=0.068  Sum_probs=147.4

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc-----------c
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL-----------L   95 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~-----------~   95 (259)
                      ..+++++++||||+|+||+++++.|+++|++ |++++|... ..+..++.. ...++.++.+|+++.+           .
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAH-VLAWGRTDG-VKEVADEIADGGGSAEAVVADLADLEGAANVAEELAAT  104 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTH-HHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCHHH-HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhc
Confidence            3467899999999999999999999999998 888886422 122222211 1357889999999987           3


Q ss_pred             CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||......    ..++++..+++|+.++.++++++    ++.+. +||++||...+.              
T Consensus       105 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~--------------  170 (273)
T 3uf0_A          105 RRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ--------------  170 (273)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred             CCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC--------------
Confidence            58999999999765422    23456789999999999999877    34555 999999987654              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.+.+.+.++.+   .++++..++||.+.++......  .............+         ...
T Consensus       171 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p---------~~r  237 (273)
T 3uf0_A          171 --GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALR--ADDERAAEITARIP---------AGR  237 (273)
T ss_dssp             --CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH--TSHHHHHHHHHHST---------TSS
T ss_pred             --CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcc--cCHHHHHHHHhcCC---------CCC
Confidence              3345578999999999999999877   5899999999999987522100  00112222222222         124


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +..++|+|+++++++
T Consensus       238 ~~~pedva~~v~~L~  252 (273)
T 3uf0_A          238 WATPEDMVGPAVFLA  252 (273)
T ss_dssp             CBCGGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            678999999999876

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.92  E-value=6.4e-24  Score=168.79  Aligned_cols=197  Identities=17%  Similarity=0.089  Sum_probs=141.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++.  ..++.++.+|+++.+            +.+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            67899999999999999999999999998 999888643222222221  236788999999877            348


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHH----HHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~----~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ...++++..+++|+.++..+++    .+++.+. +||++||...+.                
T Consensus        80 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------  143 (254)
T 1hdc_A           80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM----------------  143 (254)
T ss_dssp             CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc----------------
Confidence            99999999975431    1234567889999999985554    4555666 999999987654                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +..+...|+.+|.+.+.+.+.++.+   .++++++++||+++++..        ..+    . ......+........+.
T Consensus       144 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~--------~~~----~-~~~~~~~~~~~p~~~~~  210 (254)
T 1hdc_A          144 GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT--------AET----G-IRQGEGNYPNTPMGRVG  210 (254)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------HHH----T-CCCSTTSCTTSTTSSCB
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc--------ccc----c-hhHHHHHHhcCCCCCCC
Confidence            2234568999999999999998876   479999999999988631        111    0 00000000111122467


Q ss_pred             -eHHHHHHHHHhhh
Q 025022          246 -YVSDMVCKSCFLA  258 (259)
Q Consensus       246 -~v~D~a~~~~~~l  258 (259)
                       +++|+|+++++++
T Consensus       211 ~~~~dvA~~v~~l~  224 (254)
T 1hdc_A          211 NEPGEIAGAVVKLL  224 (254)
T ss_dssp             -CHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence             9999999998875

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.92  E-value=4.6e-24  Score=169.59  Aligned_cols=202  Identities=15%  Similarity=0.032  Sum_probs=144.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCce-eEeecccCccc-----------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRF-ELIRHDVTEPL-----------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~dl~~~~-----------~~   96 (259)
                      .+++++++||||+|+||++++++|+++|++ |++++|+........+..  ..++ .++.+|+++.+           +.
T Consensus         8 ~~~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (254)
T 2wsb_A            8 RLDGACAAVTGAGSGIGLEICRAFAASGAR-LILIDREAAALDRAAQEL--GAAVAARIVADVTDAEAMTAAAAEAEAVA   84 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH--GGGEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh--cccceeEEEEecCCHHHHHHHHHHHHhhC
Confidence            366789999999999999999999999998 999988643222222211  1245 88999999877           15


Q ss_pred             CcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|+|||+||......    ...+.+..+++|+.++.++++++    ++.+. +||++||...+...             
T Consensus        85 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~-------------  151 (254)
T 2wsb_A           85 PVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN-------------  151 (254)
T ss_dssp             CCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------------
T ss_pred             CCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC-------------
Confidence            8999999999764321    12345678899999987777665    44566 99999998765421             


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.|.+++.++.+.   +++++++||++++++......  ..+.+........+         ...+
T Consensus       152 -~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~~~---------~~~~  219 (254)
T 2wsb_A          152 -RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMR--ERPELFETWLDMTP---------MGRC  219 (254)
T ss_dssp             -SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHH--TCHHHHHHHHHTST---------TSSC
T ss_pred             -CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccc--cChHHHHHHHhcCC---------CCCC
Confidence             22334789999999999999988765   899999999999997521000  00122222222222         1347


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ++++|+|+++++++
T Consensus       220 ~~~~dva~~~~~l~  233 (254)
T 2wsb_A          220 GEPSEIAAAALFLA  233 (254)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            89999999998875

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.92  E-value=2.5e-23  Score=165.04  Aligned_cols=199  Identities=18%  Similarity=0.095  Sum_probs=134.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+...     +.    .++..+.+|+++.+            +.+
T Consensus         5 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~-----~~----~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   74 (250)
T 2fwm_X            5 FSGKNVWVTGAGKGIGYATALAFVEAGAK-VTGFDQAFTQ-----EQ----YPFATEVMDVADAAQVAQVCQRLLAETER   74 (250)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCCCS-----SC----CSSEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCchhh-----hc----CCceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            56789999999999999999999999998 9998886432     11    13778899999877            358


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ...++++..+++|+.++.++++++    ++.+. +||++||...+.                
T Consensus        75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------------  138 (250)
T 2fwm_X           75 LDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT----------------  138 (250)
T ss_dssp             CCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC----------------
Confidence            99999999975431    123457789999999999998887    44555 999999987654                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHH-HHHcCCCeEEecCCceeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIA-QAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  244 (259)
                      +..+...|+.+|.+.+.+.+.++.+.   ++++++++|+.++++.......  ...... ......  ..+........+
T Consensus       139 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~p~~~~  214 (250)
T 2fwm_X          139 PRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV--SDDAEEQRIRGFG--EQFKLGIPLGKI  214 (250)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------------
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc--ChhHHHHHHhhhh--hcccccCCCCCC
Confidence            33445789999999999999988764   8999999999999875321100  000000 000000  000001112347


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      .+++|+|+++++++
T Consensus       215 ~~p~dvA~~v~~l~  228 (250)
T 2fwm_X          215 ARPQEIANTILFLA  228 (250)
T ss_dssp             -CHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHh
Confidence            89999999998875

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.92  E-value=6.6e-24  Score=170.96  Aligned_cols=204  Identities=14%  Similarity=0.032  Sum_probs=141.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---c-CCCceeEeecccCccc----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---I-GHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~~~dl~~~~----------   94 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+..   . ...++.++.+|+++.+          
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGAK-VTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL   81 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHH
Confidence            366889999999999999999999999998 999988643322211111   0 1236888999999977          


Q ss_pred             --cCCcCEEEEccCCCCcc----c----cccChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEeccee-ecCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPI----F----YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEV-YGDPLVHPQ  159 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~----~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~~-~~~~~~~~~  159 (259)
                        +.++|++||+||.....    .    ...+++..+++|+.++.++++++.+.    +.+||++||... +.       
T Consensus        82 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~-------  154 (278)
T 1spx_A           82 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH-------  154 (278)
T ss_dssp             HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS-------
T ss_pred             HHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEeccccccc-------
Confidence              34899999999965431    1    33456778999999999999887653    459999999865 43       


Q ss_pred             CCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC---ccH--HHHHHHHHHcCCC
Q 025022          160 DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDD---GRV--VSNFIAQAIRGEP  231 (259)
Q Consensus       160 ~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~---~~~--~~~~~~~~~~~~~  231 (259)
                               +..+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++......   ...  +...........+
T Consensus       155 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p  225 (278)
T 1spx_A          155 ---------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVP  225 (278)
T ss_dssp             ---------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCT
T ss_pred             ---------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCC
Confidence                     2334467999999999999998865   5899999999999987532110   000  0000111111111


Q ss_pred             eEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          232 LTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       232 ~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                               ...+++++|+|+++++++
T Consensus       226 ---------~~~~~~~~dvA~~v~~l~  243 (278)
T 1spx_A          226 ---------AGVMGQPQDIAEVIAFLA  243 (278)
T ss_dssp             ---------TSSCBCHHHHHHHHHHHH
T ss_pred             ---------CcCCCCHHHHHHHHHHHc
Confidence                     124779999999998875

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.92  E-value=6.6e-24  Score=169.03  Aligned_cols=203  Identities=9%  Similarity=0.019  Sum_probs=145.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+.... ..++.++.+|+++.+            +
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGAR-VVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            367899999999999999999999999998 99998865433322222211 247889999999987            4


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH-----HhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||+||.....    ...++++..+++|+.++.++++++.     +.+. +||++||...+.             
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------  148 (257)
T 3imf_A           82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD-------------  148 (257)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS-------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc-------------
Confidence            5899999999965431    2234567889999999999998873     3334 999999987654             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                         +......|+.+|.+.+.+.+.++.+    ++++++.++||.+.++...... .....+........+         .
T Consensus       149 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~p---------~  215 (257)
T 3imf_A          149 ---AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKL-WISEEMAKRTIQSVP---------L  215 (257)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC--------CCSHHHHTTST---------T
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhc-ccCHHHHHHHHhcCC---------C
Confidence               3344568999999999999988754    4899999999999987532110 000111112222211         2


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+..++|+|+++++++
T Consensus       216 ~r~~~pedvA~~v~~L~  232 (257)
T 3imf_A          216 GRLGTPEEIAGLAYYLC  232 (257)
T ss_dssp             CSCBCHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHc
Confidence            34779999999999876

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.92  E-value=8.2e-24  Score=169.06  Aligned_cols=155  Identities=17%  Similarity=0.095  Sum_probs=126.1

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~   95 (259)
                      .++++|+++||||+|+||+++++.|+++|++ |++++|+...          ..++.++.+|+++.+            +
T Consensus         4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   72 (264)
T 2dtx_A            4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSK-VIDLSIHDPG----------EAKYDHIECDVTNPDQVKASIDHIFKEY   72 (264)
T ss_dssp             GGGTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESSCCC----------SCSSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEecCccc----------CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3467899999999999999999999999998 9998886443          136788999999877            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ....+++..+++|+.++.++++++.+    .+. +||++||...+.              
T Consensus        73 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------  138 (264)
T 2dtx_A           73 GSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI--------------  138 (264)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS--------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc--------------
Confidence            4899999999975432    12345678999999999999888754    344 999999987654              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGP  209 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~lr~~~v~g~  209 (259)
                        +..+...|+.+|.+.+.+.+.++.+.+  +++++++||.+.++
T Consensus       139 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~  181 (264)
T 2dtx_A          139 --ITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTP  181 (264)
T ss_dssp             --CCTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSH
T ss_pred             --CCCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCc
Confidence              334457899999999999999987765  89999999998775

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.92  E-value=7e-24  Score=170.34  Aligned_cols=204  Identities=15%  Similarity=0.095  Sum_probs=143.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||+++++.|+++|++ |++++|+.....+..+... ...++.++.+|+++.+            +
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           18 SLKGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF   96 (273)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            367899999999999999999999999998 9999886433222111111 1246888999999977            3


Q ss_pred             -CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 -IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 -~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                       .++|++||+||.....    ...++++..+++|+.++.++++++.    +.+. +||++||...+.             
T Consensus        97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~-------------  163 (273)
T 1ae1_A           97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS-------------  163 (273)
T ss_dssp             TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS-------------
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcC-------------
Confidence             7899999999975432    1234567788999999999998873    4555 999999987765             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccH--HHHHHHHHHcCCCeEEecCCce
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRV--VSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.++++.........  ............+         
T Consensus       164 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p---------  231 (273)
T 1ae1_A          164 ---ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP---------  231 (273)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST---------
T ss_pred             ---CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCC---------
Confidence               33345689999999999999988764   899999999999997632110000  0111122221111         


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+.+++|+|+++++++
T Consensus       232 ~~r~~~p~dvA~~v~~l~  249 (273)
T 1ae1_A          232 MGRAGKPQEVSALIAFLC  249 (273)
T ss_dssp             TCSCBCHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHh
Confidence            123678999999998875

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.91  E-value=1.1e-23  Score=168.36  Aligned_cols=196  Identities=21%  Similarity=0.107  Sum_probs=142.2

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------   94 (259)
                      +..+++|+++||||+|+||+++++.|+++|++ |++++|+.....          ....+.+|+++.+            
T Consensus        23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~----------~~~~~~~Dv~~~~~~~~~~~~~~~~   91 (266)
T 3uxy_A           23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGAR-VAVADRAVAGIA----------ADLHLPGDLREAAYADGLPGAVAAG   91 (266)
T ss_dssp             ---CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECSSCCTTSC----------CSEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH----------hhhccCcCCCCHHHHHHHHHHHHHh
Confidence            34567899999999999999999999999998 999988644322          1234578888876            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      +.++|++||+||.....    ...++++..+++|+.++.++++++    ++.+. +||++||...+.             
T Consensus        92 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~-------------  158 (266)
T 3uxy_A           92 LGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR-------------  158 (266)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB-------------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC-------------
Confidence            45899999999976542    223456778899999999999987    45556 999999987554             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC---CccHHHHHHHHHHcCCCeEEecCCc
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNID---DGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++.....   ................         
T Consensus       159 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~---------  226 (266)
T 3uxy_A          159 ---PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTV---------  226 (266)
T ss_dssp             ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTS---------
T ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcC---------
Confidence               34455789999999999999998775   89999999999988641100   0000011112222222         


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....+.+++|+|+++++++
T Consensus       227 p~~r~~~pedvA~~v~~L~  245 (266)
T 3uxy_A          227 PLGRIAEPEDIADVVLFLA  245 (266)
T ss_dssp             TTSSCBCHHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHHHHHh
Confidence            2335779999999999876

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.91  E-value=6e-24  Score=169.30  Aligned_cols=200  Identities=16%  Similarity=0.086  Sum_probs=145.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ++++++||||+|+||+++++.|+++|++ |++. .|+.....+..+... ...++.++.+|+++.+            +.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~-vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYN-IVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG   81 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999 7775 664332222222211 1247889999999987            46


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....    ...++++..+++|+.++.++++++.    +.+. +||++||...+.               
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~---------------  146 (258)
T 3oid_A           82 RLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIR---------------  146 (258)
T ss_dssp             CCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTS---------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCC---------------
Confidence            899999999865432    2234467789999999999988874    3445 999999987554               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+.+.++.+.   ++++..++||.+.++......  ....+........+         ...+
T Consensus       147 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p---------~~r~  214 (258)
T 3oid_A          147 -YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFP--NREDLLEDARQNTP---------AGRM  214 (258)
T ss_dssp             -BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCT--THHHHHHHHHHHCT---------TSSC
T ss_pred             -CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcc--cCHHHHHHHHhcCC---------CCCC
Confidence             34455789999999999999998764   799999999999887533211  11222333322222         1246


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      .+++|+|+++++++
T Consensus       215 ~~~~dva~~v~~L~  228 (258)
T 3oid_A          215 VEIKDMVDTVEFLV  228 (258)
T ss_dssp             BCHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHh
Confidence            78999999999876

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.91  E-value=2.5e-24  Score=173.18  Aligned_cols=202  Identities=17%  Similarity=0.108  Sum_probs=146.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++.  ..++.++.+|+++.+            +.
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGAY-VVVADVNEDAAVRVANEI--GSKAFGVRVDVSSAKDAESMVEKTTAKWG  100 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999998 999988644332222222  247889999999987            45


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....    ...++++..+++|+.++.++++++.+    .+. +||++||...+.               
T Consensus       101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------  165 (277)
T 4dqx_A          101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS---------------  165 (277)
T ss_dssp             CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS---------------
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc---------------
Confidence            899999999975432    22345677889999999999887743    344 999999987654               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                       +..+...|+.+|.+.+.+.+.++.+.   ++++.+++||.+.++.....  ................         ...
T Consensus       166 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  235 (277)
T 4dqx_A          166 -AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARA---------VMD  235 (277)
T ss_dssp             -CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTS---------TTC
T ss_pred             -CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcC---------ccc
Confidence             44455789999999999999998764   79999999999987531000  0000011111122222         223


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+.+++|+|+++++++
T Consensus       236 r~~~pedvA~~v~~L~  251 (277)
T 4dqx_A          236 RMGTAEEIAEAMLFLA  251 (277)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            4678999999999876

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.91  E-value=1.5e-24  Score=174.39  Aligned_cols=204  Identities=17%  Similarity=0.043  Sum_probs=145.4

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------   94 (259)
                      ..++++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++.  ..++.++.+|+++.+            
T Consensus        24 ~~~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (277)
T 3gvc_A           24 HPDLAGKVAIVTGAGAGIGLAVARRLADEGCH-VLCADIDGDAADAAATKI--GCGAAACRVDVSDEQQIIAMVDACVAA  100 (277)
T ss_dssp             ---CTTCEEEETTTTSTHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999998 999988644333222222  357889999999987            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      +.++|++||+||.....    ...++++..+++|+.++.++++++.+    .+. +||++||...+.             
T Consensus       101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~-------------  167 (277)
T 3gvc_A          101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV-------------  167 (277)
T ss_dssp             HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-------------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc-------------
Confidence            45899999999976432    23345678999999999999888743    445 999999986553             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC---Cc
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP---GT  239 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  239 (259)
                         +..+...|+.+|.+.+.+.+.++.+   +++++++++||.+.+|..        ...... ..+........   ..
T Consensus       168 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~--------~~~~~~-~~~~~~~~~~~~~~~~  235 (277)
T 3gvc_A          168 ---AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ--------QTAMAM-FDGALGAGGARSMIAR  235 (277)
T ss_dssp             ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------HHHHTC-C------CCHHHHHHH
T ss_pred             ---CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH--------HHhhhc-chhhHHHHhhhhhhhc
Confidence               3345578999999999999998876   589999999999988631        110000 00000000000   01


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....+.+++|+|+++++++
T Consensus       236 ~~~r~~~pedvA~~v~~L~  254 (277)
T 3gvc_A          236 LQGRMAAPEEMAGIVVFLL  254 (277)
T ss_dssp             HHSSCBCHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHc
Confidence            1234778999999999876

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.91  E-value=3.9e-24  Score=171.28  Aligned_cols=205  Identities=17%  Similarity=0.166  Sum_probs=143.1

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~----------   94 (259)
                      ..+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++.   ....++.++.+|+++.+          
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   87 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT   87 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            3467899999999999999999999999998 999988643322211111   11346888999999987          


Q ss_pred             --cCCcCEEEEccCCCCc-c----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASP-I----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                        +.++|++||+||.... .    ...++++..+++|+.++..+++++    ++.+. +||++||...+.          
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------  157 (267)
T 1iy8_A           88 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR----------  157 (267)
T ss_dssp             HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------
T ss_pred             HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc----------
Confidence              3589999999996542 1    123456788999999988766554    45555 999999986543          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC----CccHHHHHHHHHHcCCCeEEe
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID----DGRVVSNFIAQAIRGEPLTVQ  235 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~  235 (259)
                            +..+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++.....    ................+    
T Consensus       158 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p----  227 (267)
T 1iy8_A          158 ------GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNP----  227 (267)
T ss_dssp             ------BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCT----
T ss_pred             ------CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccCC----
Confidence                  2234568999999999999998876   489999999999988641100    00000101111111111    


Q ss_pred             cCCceeeeeeeHHHHHHHHHhhh
Q 025022          236 APGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       236 ~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                           ...+.+++|+|+++++++
T Consensus       228 -----~~r~~~~~dvA~~v~~l~  245 (267)
T 1iy8_A          228 -----SKRYGEAPEIAAVVAFLL  245 (267)
T ss_dssp             -----TCSCBCHHHHHHHHHHHT
T ss_pred             -----CCCCcCHHHHHHHHHHHc
Confidence                 224779999999999876

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.91  E-value=3.7e-24  Score=170.88  Aligned_cols=201  Identities=14%  Similarity=0.051  Sum_probs=146.5

Q ss_pred             ccCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc-----------
Q 025022           29 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        29 ~~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~-----------   94 (259)
                      .+++|+++||||+  |+||+++++.|+++|++ |++++|+.. ..+..++... ...+.++.+|+++.+           
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE   82 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCE-EEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence            3668899999999  99999999999999998 999888653 1112222111 124788999999977           


Q ss_pred             -cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                       +.++|++||+||....        ....++++..+++|+.++.++++++.+.   +.+||++||...+.          
T Consensus        83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------  152 (261)
T 2wyu_A           83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK----------  152 (261)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS----------
T ss_pred             HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC----------
Confidence             3489999999997542        1233456789999999999999999765   23999999976543          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.+.+.+.++.+.   ++++++++||+++++......  .............++       
T Consensus       153 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~~p~-------  217 (261)
T 2wyu_A          153 ------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP--GFTKMYDRVAQTAPL-------  217 (261)
T ss_dssp             ------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCT--THHHHHHHHHHHSTT-------
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhcc--ccHHHHHHHHhcCCC-------
Confidence                  22344679999999999999988765   899999999999997532111  122233333222221       


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                        ..+.+++|+|+++++++
T Consensus       218 --~~~~~~~dva~~v~~l~  234 (261)
T 2wyu_A          218 --RRNITQEEVGNLGLFLL  234 (261)
T ss_dssp             --SSCCCHHHHHHHHHHHH
T ss_pred             --CCCCCHHHHHHHHHHHc
Confidence              13568999999998875

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.91  E-value=6.9e-24  Score=168.16  Aligned_cols=199  Identities=18%  Similarity=0.163  Sum_probs=139.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC-CCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+. ....+.++..  ..++.++.+|+++.+            +.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAPEAEAAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCchhHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            66889999999999999999999999998 99988865 2222222221  246888999999977            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHH----HHHhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....    ...++++..+++|+.++.+++++    +++.+. +||++||...+.               
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------  146 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL---------------  146 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS---------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc---------------
Confidence            899999999975431    12345677899999998888877    455666 999999987665               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++....   ...... ....... .      .....+
T Consensus       147 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---~~~~~~-~~~~~~~-~------~~~~~~  214 (249)
T 2ew8_A          147 -KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEA---SALSAM-FDVLPNM-L------QAIPRL  214 (249)
T ss_dssp             -CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----------------------CT-T------SSSCSC
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchh---ccccch-hhHHHHh-h------CccCCC
Confidence             33345689999999999999998764   8999999999998875220   000000 0000000 0      112347


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      .+++|+|+++++++
T Consensus       215 ~~p~dva~~~~~l~  228 (249)
T 2ew8_A          215 QVPLDLTGAAAFLA  228 (249)
T ss_dssp             CCTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHc
Confidence            89999999999876

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.91  E-value=5.3e-24  Score=170.28  Aligned_cols=207  Identities=16%  Similarity=0.089  Sum_probs=147.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------   94 (259)
                      .+++|+++||||+|+||++++++|+++|++ |++++|+.....+..++...  ..++.++.+|+++.+            
T Consensus        11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD   89 (265)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence            366789999999999999999999999998 99998865443322222110  246889999999876            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----C-C-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +.++|++||+||.....    ...++++..+++|+.++.++++++.+.    + . +||++||...+.....    +.  
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----~~--  163 (265)
T 1h5q_A           90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS----SL--  163 (265)
T ss_dssp             SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE----ET--
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc----cc--
Confidence            45799999999976432    123446678999999999999887542    3 3 9999999875532110    00  


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                         .+..+...|+.+|.+.+.+++.++.+.   +++++++||++++++.....    ............+         .
T Consensus       164 ---~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~---------~  227 (265)
T 1h5q_A          164 ---NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM----DKKIRDHQASNIP---------L  227 (265)
T ss_dssp             ---TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS----CHHHHHHHHHTCT---------T
T ss_pred             ---cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc----chhHHHHHHhcCc---------c
Confidence               123446789999999999999988764   89999999999998763321    1222222222221         1


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+++++|+|+++++++
T Consensus       228 ~~~~~~~dva~~~~~l~  244 (265)
T 1h5q_A          228 NRFAQPEEMTGQAILLL  244 (265)
T ss_dssp             SSCBCGGGGHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhhc
Confidence            23679999999998875

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.91  E-value=1.9e-23  Score=164.29  Aligned_cols=183  Identities=12%  Similarity=0.076  Sum_probs=120.8

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCE
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQ  100 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~  100 (259)
                      ..+|.+|+|+||||+|+||+++++.|+++| +. |+++.|+.......     ...+++++.+|+++.+     +.++|+
T Consensus        18 ~~~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~-V~~~~R~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~D~   91 (236)
T 3qvo_A           18 YFQGHMKNVLILGAGGQIARHVINQLADKQTIK-QTLFARQPAKIHKP-----YPTNSQIIMGDVLNHAALKQAMQGQDI   91 (236)
T ss_dssp             ----CCEEEEEETTTSHHHHHHHHHHTTCTTEE-EEEEESSGGGSCSS-----CCTTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred             eecCcccEEEEEeCCcHHHHHHHHHHHhCCCce-EEEEEcChhhhccc-----ccCCcEEEEecCCCHHHHHHHhcCCCE
Confidence            344667899999999999999999999999 77 99999865433221     1247899999999977     678999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHH
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      |||+++...       .       ...+.++++++++.++ +||++||..+|+...........   .....    +...
T Consensus        92 vv~~a~~~~-------~-------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~---~~~~~----~~~~  150 (236)
T 3qvo_A           92 VYANLTGED-------L-------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNN---AVIGE----PLKP  150 (236)
T ss_dssp             EEEECCSTT-------H-------HHHHHHHHHHHHHTTCCEEEEECCCCC-------------------CG----GGHH
T ss_pred             EEEcCCCCc-------h-------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchh---hcccc----hHHH
Confidence            999997532       1       1345689999999988 99999999998764332211110   00122    3333


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce-eeeeeeHHHHHHHHHhhh
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ-TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~~~~~l  258 (259)
                      +...|..+    ...+++++++||+.++++....                  ......+.. ...+++++|+|+++++++
T Consensus       151 ~~~~~~~l----~~~gi~~~~vrPg~i~~~~~~~------------------~~~~~~~~~~~~~~i~~~DvA~~i~~ll  208 (236)
T 3qvo_A          151 FRRAADAI----EASGLEYTILRPAWLTDEDIID------------------YELTSRNEPFKGTIVSRKSVAALITDII  208 (236)
T ss_dssp             HHHHHHHH----HTSCSEEEEEEECEEECCSCCC------------------CEEECTTSCCSCSEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHH----HHCCCCEEEEeCCcccCCCCcc------------------eEEeccCCCCCCcEECHHHHHHHHHHHH
Confidence            44445444    4679999999999999875221                  111111111 235899999999999876

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.91  E-value=1e-23  Score=170.47  Aligned_cols=201  Identities=14%  Similarity=0.072  Sum_probs=143.4

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------   94 (259)
                      ..+++++++||||+|+||+++++.|+++|++ |++++|+........+.... ..++.++.+|+++.+            
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  118 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSH-VICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE  118 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHh
Confidence            3467899999999999999999999999998 88887754322221221111 246888999999977            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      +.++|+|||+||.....    ....+++..+++|+.++.++++++.    +.+. +||++||...+.             
T Consensus       119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~-------------  185 (285)
T 2c07_A          119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT-------------  185 (285)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH-------------
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc-------------
Confidence            35899999999976431    2234567889999999888877764    4565 999999986554             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++....    ....+........+         ..
T Consensus       186 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~  249 (285)
T 2c07_A          186 ---GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK----ISEQIKKNIISNIP---------AG  249 (285)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---------CCHHHHHHHHTTCT---------TS
T ss_pred             ---CCCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhh----cCHHHHHHHHhhCC---------CC
Confidence               22334679999999999999988764   8999999999999875321    11222222222221         12


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++++|+|+++++++
T Consensus       250 ~~~~~~dvA~~~~~l~  265 (285)
T 2c07_A          250 RMGTPEEVANLACFLS  265 (285)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            3789999999998875

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.91  E-value=4.6e-24  Score=170.22  Aligned_cols=208  Identities=13%  Similarity=0.050  Sum_probs=141.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC-CcchhhhccC--CCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIG--HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~--~~~~~~~~~dl~~~~------------   94 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+... ..+..+....  ..++.++.+|+++.+            
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            56789999999999999999999999998 9998886543 2211111110  246888999999977            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      +.++|++||+||.....    ...++++..+++|+.++.++++++.    +.+. +||++||...+.             
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------  147 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV-------------  147 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCc-------------
Confidence            35899999999975431    1234567889999999999888774    3455 999999987654             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHH-H-cCCCeEEe-cCCc
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA-I-RGEPLTVQ-APGT  239 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~  239 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   ++++++++||++.++.....    ........ . .......+ ....
T Consensus       148 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  220 (260)
T 1x1t_A          148 ---ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQ----ISALAEKNGVDQETAARELLSEKQ  220 (260)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------CHHHHC
T ss_pred             ---CCCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHh----hhhhccccCCchHHHHHHHhhccC
Confidence               22345689999999999999988764   79999999999998753211    01000000 0 00000000 0001


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....+++++|+|+++++++
T Consensus       221 p~~~~~~p~dva~~~~~l~  239 (260)
T 1x1t_A          221 PSLQFVTPEQLGGTAVFLA  239 (260)
T ss_dssp             TTCCCBCHHHHHHHHHHHH
T ss_pred             CCCCCcCHHHHHHHHHHHh
Confidence            1235789999999998875

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.91  E-value=7.9e-24  Score=167.27  Aligned_cols=188  Identities=14%  Similarity=0.060  Sum_probs=141.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC-------CeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc---------
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK-------NEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~-------~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~---------   94 (259)
                      +|+++||||+|+||++++++|+++|+       . |+++.|+........+... ...++.++.+|+++.+         
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPV-LVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEE-EEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceE-EEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence            57899999999999999999999999       6 9998886432221111111 1346889999999976         


Q ss_pred             ---cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                         +.++|+|||+||.....    ....+++..+++|+.++.++++++.    +.+. +||++||...+.          
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~----------  150 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK----------  150 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC----------
Confidence               35899999999976431    1234567889999999999988874    3455 999999987664          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.+.+++.++.+   .+++++++|||+++++.......             ..        
T Consensus       151 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-------------~~--------  203 (244)
T 2bd0_A          151 ------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD-------------EM--------  203 (244)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS-------------TT--------
T ss_pred             ------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc-------------cc--------
Confidence                  3344578999999999999888764   47999999999999986322100             00        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+++++|+|+++++++
T Consensus       204 -~~~~~~~~dva~~~~~l~  221 (244)
T 2bd0_A          204 -QALMMMPEDIAAPVVQAY  221 (244)
T ss_dssp             -GGGSBCHHHHHHHHHHHH
T ss_pred             -cccCCCHHHHHHHHHHHH
Confidence             125789999999998875

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.91  E-value=8.2e-24  Score=171.49  Aligned_cols=213  Identities=11%  Similarity=0.029  Sum_probs=149.8

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCC
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIE   97 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~   97 (259)
                      ...++++|+++||||+|+||++++++|+++|++ |++++|+.....+..+..  ..++.++.+|+++.+        ..+
T Consensus        10 ~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~   86 (291)
T 3rd5_A           10 DLPSFAQRTVVITGANSGLGAVTARELARRGAT-VIMAVRDTRKGEAAARTM--AGQVEVRELDLQDLSSVRRFADGVSG   86 (291)
T ss_dssp             GCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHTTS--SSEEEEEECCTTCHHHHHHHHHTCCC
T ss_pred             hccCCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh--cCCeeEEEcCCCCHHHHHHHHHhcCC
Confidence            445578899999999999999999999999998 999998654333222222  357899999999987        347


Q ss_pred             cCEEEEccCCCCcc--ccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCC-CCCCCCCcCCCCCCCCC
Q 025022           98 VDQIYHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGVR  173 (259)
Q Consensus        98 ~d~vi~~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~-~~~~e~~~~~~~~~~~~  173 (259)
                      +|++||+||.....  ...++++..+++|+.++.++++++.+... +||++||...+..... ....++    ..+..+.
T Consensus        87 iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~----~~~~~~~  162 (291)
T 3rd5_A           87 ADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWR----SRRYSPW  162 (291)
T ss_dssp             EEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCS----SSCCCHH
T ss_pred             CCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCccccccc----ccCCCCc
Confidence            89999999976532  34566788999999999999999988877 9999999876643211 111111    1245566


Q ss_pred             CchHHHHHHHHHHHHHHHHHh---C--CcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHH
Q 025022          174 SCYDEGKRVAETLMFDYHRQH---G--IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS  248 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~---~--~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  248 (259)
                      ..|+.||.+.+.+.+.++.+.   +  ++++.++||.+..+.....    ...+..... ..+        ..+-..+++
T Consensus       163 ~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~----~~~~~~~~~-~~~--------~~~~~~~~~  229 (291)
T 3rd5_A          163 LAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGAS----GRKLGDALM-SAA--------TRVVATDAD  229 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC---------------------------------CHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCcccccccc----chHHHHHHH-HHH--------HHHHhCCHH
Confidence            789999999999999988764   4  9999999999988753211    011111111 011        111223589


Q ss_pred             HHHHHHHhhh
Q 025022          249 DMVCKSCFLA  258 (259)
Q Consensus       249 D~a~~~~~~l  258 (259)
                      |+|+++++++
T Consensus       230 ~~A~~~~~l~  239 (291)
T 3rd5_A          230 FGARQTLYAA  239 (291)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.91  E-value=3.3e-24  Score=174.55  Aligned_cols=207  Identities=15%  Similarity=0.040  Sum_probs=144.6

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc-----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~-----------   94 (259)
                      +..+++++++||||+|+||++++++|+++|++ |++++|+.....+..+.+. ...++.++.+|+++.+           
T Consensus        26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  104 (301)
T 3tjr_A           26 LSGFDGRAAVVTGGASGIGLATATEFARRGAR-LVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFR  104 (301)
T ss_dssp             CCCSTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             HhccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            44567899999999999999999999999998 9999886543332222211 1347889999999987           


Q ss_pred             -cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhC-C-eEEEEecceeecCCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                       +.++|++||+||.....    ...++.+..+++|+.++.++++++.    +.+ . +||++||...+.           
T Consensus       105 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-----------  173 (301)
T 3tjr_A          105 LLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV-----------  173 (301)
T ss_dssp             HHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS-----------
T ss_pred             hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC-----------
Confidence             35899999999976432    2334567899999999999998864    344 4 999999987654           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHH-----HHHcCCCeEEe
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIA-----QAIRGEPLTVQ  235 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  235 (259)
                           +..+...|+.||.+.+.+.+.++.+.   |+++++++||.+..+..        .....     ......+...+
T Consensus       174 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~--------~~~~~~~~~~~~~~~~~~~~~  240 (301)
T 3tjr_A          174 -----PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLV--------SNSERIRGADYGMSATPEGAF  240 (301)
T ss_dssp             -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHH--------HHHHHHC--------------
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccc--------cccccccchhhccccChhhhc
Confidence                 33455789999999999999988764   79999999998887531        11110     00111122222


Q ss_pred             cCCceeeeeeeHHHHHHHHHhhh
Q 025022          236 APGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       236 ~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +.......+++++|+|++++.++
T Consensus       241 ~~~~~~~~~~~pedvA~~i~~~l  263 (301)
T 3tjr_A          241 GPLPTQDESVSADDVARLTADAI  263 (301)
T ss_dssp             --------CCCHHHHHHHHHHHH
T ss_pred             cccccccCCCCHHHHHHHHHHHH
Confidence            33334457899999999998765

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.91  E-value=1.5e-23  Score=167.95  Aligned_cols=195  Identities=19%  Similarity=0.110  Sum_probs=143.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ..++|+|+||||+|+||+++++.|+++|++ |++++|+.....         .....+.+|+++.+            +.
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAK-VVSVSLDEKSDV---------NVSDHFKIDVTNEEEVKEAVEKTTKKYG   80 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCC--CT---------TSSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCchhcc---------CceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            357899999999999999999999999998 999888644321         25678899999987            45


Q ss_pred             CcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||......    ..++++..+++|+.++..+++++.+    .+. +||++||...+.               
T Consensus        81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------  145 (269)
T 3vtz_A           81 RIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA---------------  145 (269)
T ss_dssp             CCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc---------------
Confidence            8999999999764322    2234567889999999999887643    455 999999987665               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCC-------CCccHHHHHHHHHHcCCCeEEecCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNI-------DDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                       +......|+.+|.+.+.+.+.++.+.  +++++.++||.+.++....       .................+       
T Consensus       146 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------  217 (269)
T 3vtz_A          146 -ATKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHP-------  217 (269)
T ss_dssp             -BCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHST-------
T ss_pred             -CCCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcCC-------
Confidence             33445789999999999999998876  7999999999998864110       000011222222222221       


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                        ...+.+++|+|+++++++
T Consensus       218 --~~r~~~pedvA~~v~~L~  235 (269)
T 3vtz_A          218 --MGRIGRPEEVAEVVAFLA  235 (269)
T ss_dssp             --TSSCBCHHHHHHHHHHHH
T ss_pred             --CCCCcCHHHHHHHHHHHh
Confidence              234678999999999876

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.91  E-value=8.2e-25  Score=168.07  Aligned_cols=170  Identities=17%  Similarity=0.084  Sum_probs=132.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIYHL  104 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~vi~~  104 (259)
                      |+++||||+|+||++++++|+ +|++ |++++|+..                .+.+|+++.+        ..++|+|||+
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~g~~-V~~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~~d~vi~~   65 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-KKAE-VITAGRHSG----------------DVTVDITNIDSIKKMYEQVGKVDAIVSA   65 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-TTSE-EEEEESSSS----------------SEECCTTCHHHHHHHHHHHCCEEEEEEC
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-CCCe-EEEEecCcc----------------ceeeecCCHHHHHHHHHHhCCCCEEEEC
Confidence            589999999999999999999 9998 999988532                4678888876        3368999999


Q ss_pred             cCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchH
Q 025022          105 ACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYD  177 (259)
Q Consensus       105 a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~  177 (259)
                      ||......    ...++...+++|+.++.++++++.+.   +.+||++||...+.                +..+...|+
T Consensus        66 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~----------------~~~~~~~Y~  129 (202)
T 3d7l_A           66 TGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED----------------PIVQGASAA  129 (202)
T ss_dssp             CCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS----------------CCTTCHHHH
T ss_pred             CCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC----------------CCCccHHHH
Confidence            99654321    12345677889999999999999876   34999999986543                334457899


Q ss_pred             HHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHH
Q 025022          178 EGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSC  255 (259)
Q Consensus       178 ~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  255 (259)
                      .+|.+.|.+++.++.+.  +++++++||++++++..         .    .         ++....+++++++|+|++++
T Consensus       130 ~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~---------~----~---------~~~~~~~~~~~~~dva~~~~  187 (202)
T 3d7l_A          130 MANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD---------K----L---------EPFFEGFLPVPAAKVARAFE  187 (202)
T ss_dssp             HHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH---------H----H---------GGGSTTCCCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh---------h----h---------hhhccccCCCCHHHHHHHHH
Confidence            99999999999988653  89999999999998641         0    0         11112356899999999987


Q ss_pred             hhh
Q 025022          256 FLA  258 (259)
Q Consensus       256 ~~l  258 (259)
                      .++
T Consensus       188 ~~~  190 (202)
T 3d7l_A          188 KSV  190 (202)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            653

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.91  E-value=1.2e-23  Score=166.49  Aligned_cols=199  Identities=12%  Similarity=-0.002  Sum_probs=147.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++|+++||||+|+||++++++|+++|++ |+++.|+........+... ...++.++.+|+++.+            ..
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGAT-VVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            56899999999999999999999999998 9999886443222221111 1347889999999977            45


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....    ...++++..+++|+.++.++++++.+    .+. +||++||...+.               
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------  146 (247)
T 3lyl_A           82 AIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSA---------------  146 (247)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH---------------
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc---------------
Confidence            799999999976432    23345678899999999999887643    455 999999987654               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+.+.++.+   .++++.+++||.+.++.....    ............         ....+
T Consensus       147 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----~~~~~~~~~~~~---------~~~~~  212 (247)
T 3lyl_A          147 -GNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKL----TDEQKSFIATKI---------PSGQI  212 (247)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTS----CHHHHHHHHTTS---------TTCCC
T ss_pred             -CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhc----cHHHHHHHhhcC---------CCCCC
Confidence             3344578999999999999998876   489999999999998764322    122222222222         22357


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      .+++|+|+++++++
T Consensus       213 ~~~~dva~~i~~l~  226 (247)
T 3lyl_A          213 GEPKDIAAAVAFLA  226 (247)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHh
Confidence            79999999998875

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.91  E-value=8.5e-24  Score=167.37  Aligned_cols=198  Identities=13%  Similarity=0.100  Sum_probs=133.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++|+++||||+|+||++++++|+++|++ |+++ .|+........+... ...++.++.+|+++.+            +
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~-V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGAN-IVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF   81 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            56789999999999999999999999998 8888 554332221111111 1246889999999977            2


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEeccee-ecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEV-YGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~-~~~~~~~~~~e~~~~  165 (259)
                      .++|+|||+||.....    ....+++..+++|+.++.++++++.+    .+. +||++||... ++.            
T Consensus        82 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------  149 (247)
T 2hq1_A           82 GRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGN------------  149 (247)
T ss_dssp             SCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC------------
Confidence            4899999999975421    23456788999999998888877653    465 9999999743 331            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                           .+...|+.+|.+.|.+.+.++.+.   ++++++++|+.+.++....    ...........+.+         ..
T Consensus       150 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~  211 (247)
T 2hq1_A          150 -----AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV----LPDKVKEMYLNNIP---------LK  211 (247)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----SCHHHHHHHHTTST---------TS
T ss_pred             -----CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh----cchHHHHHHHhhCC---------CC
Confidence                 234679999999999999988764   7999999999988753211    11112222222222         23


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++++|+|+++.+++
T Consensus       212 ~~~~~~dva~~~~~l~  227 (247)
T 2hq1_A          212 RFGTPEEVANVVGFLA  227 (247)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHc
Confidence            4789999999998765

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.91  E-value=9.3e-24  Score=169.93  Aligned_cols=199  Identities=15%  Similarity=0.077  Sum_probs=143.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC-CCCCCcchhhhccC--CCceeEeecccCcc----c-------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSKDNLRKWIG--HPRFELIRHDVTEP----L-------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~~~~~~~~~~~--~~~~~~~~~dl~~~----~-------   94 (259)
                      .|++|+++||||+|+||+++++.|+++|++ |++++| +.....+..++...  ..++.++.+|+++.    +       
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGFR-VVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIID   86 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHH
Confidence            367889999999999999999999999998 988888 43222211111100  24688999999998    5       


Q ss_pred             -----cCCcCEEEEccCCCCcc----ccc-----------cChhHHHHHhhhhHHHHHHHHHHh---C-------CeEEE
Q 025022           95 -----LIEVDQIYHLACPASPI----FYK-----------YNPVKTIKTNVIGTLNMLGLAKRV---G-------ARILL  144 (259)
Q Consensus        95 -----~~~~d~vi~~a~~~~~~----~~~-----------~~~~~~~~~n~~~~~~l~~~~~~~---~-------~~~i~  144 (259)
                           +.++|++||+||.....    ...           .+++..+++|+.++.++++++.+.   +       .+||+
T Consensus        87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~  166 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN  166 (276)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred             HHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Confidence                 35899999999965431    112           445678999999999999988763   2       48999


Q ss_pred             EecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHH
Q 025022          145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSN  221 (259)
Q Consensus       145 ~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~  221 (259)
                      +||...+.                +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.+| ..     ....
T Consensus       167 isS~~~~~----------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~-----~~~~  224 (276)
T 1mxh_A          167 LCDAMTDL----------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PA-----MPQE  224 (276)
T ss_dssp             ECCGGGGS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SS-----SCHH
T ss_pred             ECchhhcC----------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-cc-----CCHH
Confidence            99987664                33445689999999999999988764   899999999999998 21     1122


Q ss_pred             HHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          222 FIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .........++        .+++++++|+|+++++++
T Consensus       225 ~~~~~~~~~p~--------~r~~~~~~dva~~v~~l~  253 (276)
T 1mxh_A          225 TQEEYRRKVPL--------GQSEASAAQIADAIAFLV  253 (276)
T ss_dssp             HHHHHHTTCTT--------TSCCBCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCC--------CCCCCCHHHHHHHHHHHh
Confidence            22233222221        122779999999998875

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.91  E-value=1.6e-23  Score=165.92  Aligned_cols=169  Identities=11%  Similarity=-0.010  Sum_probs=126.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~   95 (259)
                      |++++++||||+|+||+++++.|+++|  ++ |++++|+..... .+... ...++.++.+|+++.+            +
T Consensus         1 m~~k~vlItGasggiG~~la~~l~~~g~~~~-V~~~~r~~~~~~-~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (250)
T 1yo6_A            1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRH-IIATARDVEKAT-ELKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCE-EEEEESSGGGCH-HHHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHhcCCCcE-EEEEecCHHHHH-HHHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence            467899999999999999999999999  87 999998654432 22222 2457899999999876            2


Q ss_pred             C--CcCEEEEccCCCC-c----cccccChhHHHHHhhhhHHHHHHHHHHh----------C-----C-eEEEEecceeec
Q 025022           96 I--EVDQIYHLACPAS-P----IFYKYNPVKTIKTNVIGTLNMLGLAKRV----------G-----A-RILLTSTSEVYG  152 (259)
Q Consensus        96 ~--~~d~vi~~a~~~~-~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~-----~-~~i~~Ss~~~~~  152 (259)
                      .  ++|+|||+||... .    .....+.+..+++|+.++.++++++.+.          +     . +||++||...+.
T Consensus        78 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  157 (250)
T 1yo6_A           78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI  157 (250)
T ss_dssp             GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred             CCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcccc
Confidence            2  8999999999765 2    1223456778999999999998876542          4     4 999999987654


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       153 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                      ....    +.     ++..+...|+.+|.+.+.+++.++.+.   ++++++++||++.++.
T Consensus       158 ~~~~----~~-----~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  209 (250)
T 1yo6_A          158 TDNT----SG-----SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNL  209 (250)
T ss_dssp             TTCC----ST-----TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC----
T ss_pred             CCcc----cc-----cccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCC
Confidence            3210    11     122456789999999999999998775   8999999999988764

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.91  E-value=7.4e-24  Score=170.67  Aligned_cols=203  Identities=13%  Similarity=0.016  Sum_probs=145.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||+++++.|+++|++ |++++|+.....+..+.+.. ..++.++.+|+++.+            +.
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45789999999999999999999999998 99998864433222222211 357889999999987            45


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH------hCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR------VGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~------~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      ++|++||+||.....    ....+++..+++|+.++.++++++.+      .+. +||++||...+.             
T Consensus       101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~-------------  167 (279)
T 3sju_A          101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ-------------  167 (279)
T ss_dssp             SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS-------------
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc-------------
Confidence            899999999976532    12344677889999999999998754      455 999999987654             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-------CccHHHHHHHHHHcCCCeEEe
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID-------DGRVVSNFIAQAIRGEPLTVQ  235 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  235 (259)
                         +......|+.+|.+.+.+.+.++.+   +++++.+++||.+.++.....       ................+    
T Consensus       168 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----  240 (279)
T 3sju_A          168 ---GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIP----  240 (279)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTCT----
T ss_pred             ---CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcCC----
Confidence               3344568999999999999999877   589999999999987531100       00001122222222222    


Q ss_pred             cCCceeeeeeeHHHHHHHHHhhh
Q 025022          236 APGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       236 ~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                           ...+.+++|+|+++++++
T Consensus       241 -----~~r~~~pedvA~~v~~L~  258 (279)
T 3sju_A          241 -----LGRYSTPEEVAGLVGYLV  258 (279)
T ss_dssp             -----TSSCBCHHHHHHHHHHHT
T ss_pred             -----CCCCCCHHHHHHHHHHHh
Confidence                 234678999999999875

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.91  E-value=1.4e-23  Score=168.68  Aligned_cols=203  Identities=20%  Similarity=0.041  Sum_probs=148.4

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc-----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~-----------   94 (259)
                      ..++++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++.. ...++.++.+|+++.+           
T Consensus        27 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~  105 (276)
T 3r1i_A           27 LFDLSGKRALITGASTGIGKKVALAYAEAGAQ-VAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTG  105 (276)
T ss_dssp             GGCCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            44577899999999999999999999999998 9999986544332222211 1247889999999987           


Q ss_pred             -cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hC--CeEEEEecceeecCCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                       +.++|++||+||......    ..++++..+++|+.++..+++++.+    .+  .+||++||...+...         
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~---------  176 (276)
T 3r1i_A          106 ELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIIN---------  176 (276)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC---------
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccC---------
Confidence             358999999999765422    2345667889999999999887743    33  389999998654320         


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                           ...+...|+.+|.+.+.+.+.++.+   .+++++.++||.+..+.....     ...........+         
T Consensus       177 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-----~~~~~~~~~~~p---------  237 (276)
T 3r1i_A          177 -----IPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL-----ADYHALWEPKIP---------  237 (276)
T ss_dssp             -----CSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG-----GGGHHHHGGGST---------
T ss_pred             -----CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-----hHHHHHHHhcCC---------
Confidence                 2234567999999999999999877   589999999999998763311     112222222222         


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+..++|+|+++++++
T Consensus       238 ~~r~~~pedvA~~v~fL~  255 (276)
T 3r1i_A          238 LGRMGRPEELTGLYLYLA  255 (276)
T ss_dssp             TSSCBCGGGSHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHc
Confidence            123668899999999876

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.91  E-value=7.1e-24  Score=170.04  Aligned_cols=199  Identities=17%  Similarity=0.129  Sum_probs=136.6

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------   94 (259)
                      +..+++++++||||+|+||++++++|+++|++ |++++|+.....+..++.  ..++.++.+|+++.+            
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~   99 (272)
T 4dyv_A           23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYG-VALAGRRLDALQETAAEI--GDDALCVPTDVTDPDSVRALFTATVEK   99 (272)
T ss_dssp             -----CCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH--TSCCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh--CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence            33456789999999999999999999999998 999988644333222222  247889999999987            


Q ss_pred             cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHH----hC--C-eEEEEecceeecCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VG--A-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                      +.++|++||+||....     +...++++..+++|+.++..+++++.+    .+  . +||++||...+.          
T Consensus       100 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~----------  169 (272)
T 4dyv_A          100 FGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS----------  169 (272)
T ss_dssp             HSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS----------
T ss_pred             cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC----------
Confidence            4589999999997532     122345678999999998888887643    33  3 999999987553          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.+.+.+.++.+   .++++..++||.+..+....    ...... .       ..  ...
T Consensus       170 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~-~-------~~--~~~  229 (272)
T 4dyv_A          170 ------PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQK----MKAGVP-Q-------AD--LSI  229 (272)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC--------------------------------
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhh----hcccch-h-------hh--hcc
Confidence                  3345578999999999999999876   48999999999998865221    100000 0       00  011


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....+++++|+|+++++++
T Consensus       230 ~~~~~~~pedvA~~v~fL~  248 (272)
T 4dyv_A          230 KVEPVMDVAHVASAVVYMA  248 (272)
T ss_dssp             ------CHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHh
Confidence            2234789999999999875

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.91  E-value=1.4e-24  Score=173.32  Aligned_cols=200  Identities=16%  Similarity=0.040  Sum_probs=144.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+++. ...++.++.+|+++.+            +
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLAQDGAH-VVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            367899999999999999999999999998 9999886433222111111 1246788999999876            3


Q ss_pred             CCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||+||....     +...++++..+++|+.++.++++++.    +.+. +||++||...+.             
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------  156 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH-------------  156 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS-------------
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC-------------
Confidence            589999999996431     12234467889999999998888764    4555 999999987765             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCce
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVV--SNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  240 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++....    ..  ..........         ..
T Consensus       157 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~  220 (260)
T 2zat_A          157 ---PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQV----LWMDKARKEYMKES---------LR  220 (260)
T ss_dssp             ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHH----HHSSHHHHHHHHHH---------HT
T ss_pred             ---CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchh----cccChHHHHHHHhc---------CC
Confidence               33445689999999999999988764   8999999999998875210    00  0000111111         11


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+++++|+|+++++++
T Consensus       221 ~~~~~~~~dva~~v~~l~  238 (260)
T 2zat_A          221 IRRLGNPEDCAGIVSFLC  238 (260)
T ss_dssp             CSSCBCGGGGHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHc
Confidence            234779999999998875

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.91  E-value=2.6e-23  Score=167.21  Aligned_cols=200  Identities=16%  Similarity=0.136  Sum_probs=143.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ++++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++.....++.++.+|+++.+            +.
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGAR-VFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSA  104 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            367899999999999999999999999998 99998864332222222211226888999999976            45


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhC-----CeEEEEecceeecCCCCCCCCCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG-----ARILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-----~~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                      ++|++||+||.....    ...++++..+++|+.++.++++++.    +.+     .+||++||...+..          
T Consensus       105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~----------  174 (276)
T 2b4q_A          105 RLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA----------  174 (276)
T ss_dssp             CCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC----------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC----------
Confidence            899999999965431    2234567899999999988887764    333     39999999876542          


Q ss_pred             cCCCCCCCCCC-chHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHc--CCCeEEecC
Q 025022          164 WGNVNPIGVRS-CYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIR--GEPLTVQAP  237 (259)
Q Consensus       164 ~~~~~~~~~~~-~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  237 (259)
                            ..... .|+.+|.+.+.+.+.++.+   .++++++++||.+.++...    ............  ..+      
T Consensus       175 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p------  238 (276)
T 2b4q_A          175 ------MGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTR----HIANDPQALEADSASIP------  238 (276)
T ss_dssp             ------CCCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTH----HHHHCHHHHHHHHHTST------
T ss_pred             ------CCCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchh----hcchhHHHHHHhhcCCC------
Confidence                  12223 7999999999999998876   4899999999999887521    111111111111  111      


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                         ...+.+++|+|+++++++
T Consensus       239 ---~~r~~~p~dvA~~v~~l~  256 (276)
T 2b4q_A          239 ---MGRWGRPEEMAALAISLA  256 (276)
T ss_dssp             ---TSSCCCHHHHHHHHHHHH
T ss_pred             ---CCCcCCHHHHHHHHHHHh
Confidence               123679999999999875

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.91  E-value=3.9e-23  Score=166.56  Aligned_cols=206  Identities=12%  Similarity=0.010  Sum_probs=148.4

Q ss_pred             CcccccccCCCEEEEEcCchh--hhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc-----
Q 025022           23 LRFSKFFQSNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL-----   94 (259)
Q Consensus        23 ~~~~~~~~~~~~vlItGatG~--iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~-----   94 (259)
                      ....+..+++++++||||+|+  ||+++++.|+++|++ |++++|+.  ..+.+++.. ...++.++.+|+++.+     
T Consensus        17 ~~~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~   93 (280)
T 3nrc_A           17 RGSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAE-LAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDL   93 (280)
T ss_dssp             -----CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCE-EEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHH
T ss_pred             CCCcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCE-EEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHH
Confidence            344455677899999999966  999999999999998 99988865  222222221 1235889999999987     


Q ss_pred             -------cCCcCEEEEccCCCCcc---------ccccChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEecceeecCC
Q 025022           95 -------LIEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDP  154 (259)
Q Consensus        95 -------~~~~d~vi~~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~~~~~~  154 (259)
                             +.++|++||+||.....         ....+++..+++|+.++.++++++.+.    +.+||++||...+.  
T Consensus        94 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~--  171 (280)
T 3nrc_A           94 FVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK--  171 (280)
T ss_dssp             HHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS--
T ss_pred             HHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc--
Confidence                   46899999999976431         233456778999999999999988653    23999999987654  


Q ss_pred             CCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCC
Q 025022          155 LVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEP  231 (259)
Q Consensus       155 ~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~  231 (259)
                                    +..+...|+.+|.+.+.+.+.++.+   .++++.+++||.+..+......  .............+
T Consensus       172 --------------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p  235 (280)
T 3nrc_A          172 --------------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGIS--NFKKMLDYNAMVSP  235 (280)
T ss_dssp             --------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCT--THHHHHHHHHHHST
T ss_pred             --------------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCc--chHHHHHHHHhcCC
Confidence                          3445578999999999999998876   5899999999999987643211  12233333332222


Q ss_pred             eEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          232 LTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       232 ~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .         ..+..++|+|+++++++
T Consensus       236 ~---------~~~~~pedvA~~v~~l~  253 (280)
T 3nrc_A          236 L---------KKNVDIMEVGNTVAFLC  253 (280)
T ss_dssp             T---------CSCCCHHHHHHHHHHTT
T ss_pred             C---------CCCCCHHHHHHHHHHHh
Confidence            1         23568899999999875

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.91  E-value=7.1e-24  Score=169.64  Aligned_cols=204  Identities=16%  Similarity=0.089  Sum_probs=148.2

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~----------   94 (259)
                      +..+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+++.  ...++.++.+|+++.+          
T Consensus        15 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   93 (266)
T 4egf_A           15 VLRLDGKRALITGATKGIGADIARAFAAAGAR-LVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAA   93 (266)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence            34567899999999999999999999999998 9999886443322222211  1357899999999987          


Q ss_pred             --cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                        +.++|++||+||.....    ...++++..+++|+.++..+++++.+    .+ . +||++||...+.          
T Consensus        94 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~----------  163 (266)
T 4egf_A           94 EAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA----------  163 (266)
T ss_dssp             HHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc----------
Confidence              45899999999976532    12344677899999999999887743    33 3 999999987654          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +......|+.+|.+.+.+.+.++.+   +++++..++||.+.++.......  ............+        
T Consensus       164 ------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~p--------  227 (266)
T 4egf_A          164 ------PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWG--DEAKSAPMIARIP--------  227 (266)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTC--SHHHHHHHHTTCT--------
T ss_pred             ------CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhcc--ChHHHHHHHhcCC--------
Confidence                  3344578999999999999999876   48999999999998864110000  0112222222222        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+..++|+|+++++++
T Consensus       228 -~~r~~~p~dva~~v~~L~  245 (266)
T 4egf_A          228 -LGRFAVPHEVSDAVVWLA  245 (266)
T ss_dssp             -TSSCBCHHHHHHHHHHHH
T ss_pred             -CCCCcCHHHHHHHHHHHh
Confidence             123568999999999876

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.91  E-value=9.7e-24  Score=170.04  Aligned_cols=202  Identities=15%  Similarity=0.019  Sum_probs=134.8

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~-----------   94 (259)
                      ..+++++++||||+|+||+++++.|+++|++ |++++++.....+.....+  ...++.++.+|+++.+           
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  103 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFD-IAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVA  103 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999999999998 8888764322222211111  1357889999999987           


Q ss_pred             -cCCcCEEEEccCCCC--c----cccccChhHHHHHhhhhHHHHHHHHHH----hC---C-eEEEEecceeecCCCCCCC
Q 025022           95 -LIEVDQIYHLACPAS--P----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VG---A-RILLTSTSEVYGDPLVHPQ  159 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~--~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~-~~i~~Ss~~~~~~~~~~~~  159 (259)
                       +.++|++||+||...  .    +...++++..+++|+.++.++++++.+    .+   . +||++||...+.       
T Consensus       104 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~-------  176 (280)
T 4da9_A          104 EFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM-------  176 (280)
T ss_dssp             HHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----------
T ss_pred             HcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc-------
Confidence             358999999999732  1    113345678889999999988887643    23   4 899999987654       


Q ss_pred             CCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 025022          160 DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       160 ~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (259)
                               +..+...|+.+|.+.+.+.+.++.+   .++++..++||.+.++....    ...........        
T Consensus       177 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~--------  235 (280)
T 4da9_A          177 ---------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAA----VSGKYDGLIES--------  235 (280)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------
T ss_pred             ---------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhh----cchhHHHHHhh--------
Confidence                     3334467999999999999999877   57999999999998875321    11111111111        


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .......+..++|+|+++++++
T Consensus       236 ~~~p~~r~~~pedvA~~v~~L~  257 (280)
T 4da9_A          236 GLVPMRRWGEPEDIGNIVAGLA  257 (280)
T ss_dssp             ------CCBCHHHHHHHHHHHH
T ss_pred             cCCCcCCcCCHHHHHHHHHHHh
Confidence            0122345778999999999876

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.91  E-value=1.3e-23  Score=169.04  Aligned_cols=201  Identities=13%  Similarity=0.020  Sum_probs=146.7

Q ss_pred             ccCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc-----------
Q 025022           29 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        29 ~~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~-----------   94 (259)
                      .+++++++||||+  |+||+++++.|+++|++ |++++|+.. ..+..++... ...+.++.+|+++.+           
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~-V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   80 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK   80 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCE-EEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHH
Confidence            3668999999999  99999999999999998 999988754 2222222211 124788999999977           


Q ss_pred             -cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                       +.++|++||+||....        ....++++..+++|+.++.++++++.+.   +.+||++||...+.          
T Consensus        81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------  150 (275)
T 2pd4_A           81 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK----------  150 (275)
T ss_dssp             HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS----------
T ss_pred             HcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC----------
Confidence             4589999999997542        2233456789999999999999999775   34999999976543          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++......  .............++       
T Consensus       151 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p~-------  215 (275)
T 2pd4_A          151 ------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIA--DFRMILKWNEINAPL-------  215 (275)
T ss_dssp             ------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGST--THHHHHHHHHHHSTT-------
T ss_pred             ------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhcc--ccHHHHHHHHhcCCc-------
Confidence                  22344679999999999999988775   899999999999987532211  112222222222221       


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                        ..+.+++|+|+++++++
T Consensus       216 --~~~~~p~dva~~~~~l~  232 (275)
T 2pd4_A          216 --RKNVSLEEVGNAGMYLL  232 (275)
T ss_dssp             --SSCCCHHHHHHHHHHHH
T ss_pred             --CCCCCHHHHHHHHHHHh
Confidence              12558899999998875

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.91  E-value=1.1e-23  Score=166.85  Aligned_cols=199  Identities=17%  Similarity=0.133  Sum_probs=146.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++.  ..++.++.+|+++.+            +.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   79 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGAT-VIVSDINAEGAKAAAASI--GKKARAIAADISDPGSVKALFAEIQALTG   79 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            467899999999999999999999999998 999988654333322222  357889999999987            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHH----HHHhC-C-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGL----AKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~----~~~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|++||+||.....    ...++++..+++|+.++.+++++    +++.+ . +||++||...+.              
T Consensus        80 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  145 (247)
T 3rwb_A           80 GIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA--------------  145 (247)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH--------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc--------------
Confidence            899999999976432    12345678999999999999887    45555 4 999999987654              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+.+.++.+   ++++++.++||.+..+............+....   .+         ...
T Consensus       146 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---~~---------~~r  211 (247)
T 3rwb_A          146 --GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML---QA---------MKG  211 (247)
T ss_dssp             --TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH---SS---------SCS
T ss_pred             --CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc---cc---------cCC
Confidence              3344578999999999999999877   589999999999987642211111111111110   11         123


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +..++|+|+++++++
T Consensus       212 ~~~pedva~~v~~L~  226 (247)
T 3rwb_A          212 KGQPEHIADVVSFLA  226 (247)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHh
Confidence            568899999999875

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.91  E-value=4.3e-23  Score=166.29  Aligned_cols=201  Identities=14%  Similarity=0.079  Sum_probs=142.7

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~-----------   94 (259)
                      .++++++++||||+|+||++++++|+++|++ |++++|+...... +.....  ..++.++.+|+++.+           
T Consensus        30 ~~l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~  107 (279)
T 3ctm_A           30 FSLKGKVASVTGSSGGIGWAVAEAYAQAGAD-VAIWYNSHPADEK-AEHLQKTYGVHSKAYKCNISDPKSVEETISQQEK  107 (279)
T ss_dssp             GCCTTCEEEETTTTSSHHHHHHHHHHHHTCE-EEEEESSSCCHHH-HHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH-HHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999999998 9999886543222 211111  246889999999876           


Q ss_pred             -cCCcCEEEEccCCCCc------cccccChhHHHHHhhhhH----HHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASP------IFYKYNPVKTIKTNVIGT----LNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~----~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                       +.++|+|||+||....      ....++++..+++|+.++    ..++..+++.+. +||++||...+...        
T Consensus       108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------  179 (279)
T 3ctm_A          108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN--------  179 (279)
T ss_dssp             HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC---------
T ss_pred             HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC--------
Confidence             3469999999996543      122334567889999995    556666666666 99999998654310        


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.|.+++.++.+.   + ++++++|+.+.++......    ...........+        
T Consensus       180 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~----~~~~~~~~~~~p--------  240 (279)
T 3ctm_A          180 ------IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFAS----KDMKAKWWQLTP--------  240 (279)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCC----HHHHHHHHHHST--------
T ss_pred             ------CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccC----hHHHHHHHHhCC--------
Confidence                  13445689999999999999998774   5 8999999999887532111    111222211111        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+++++|+|+++++++
T Consensus       241 -~~~~~~~~dvA~~~~~l~  258 (279)
T 3ctm_A          241 -LGREGLTQELVGGYLYLA  258 (279)
T ss_dssp             -TCSCBCGGGTHHHHHHHH
T ss_pred             -ccCCcCHHHHHHHHHHHh
Confidence             123779999999998875

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.91  E-value=3.8e-24  Score=169.19  Aligned_cols=197  Identities=12%  Similarity=0.033  Sum_probs=138.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhhhcc-CCCceeE-eecccCccc------------cC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFEL-IRHDVTEPL------------LI   96 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~-~~~dl~~~~------------~~   96 (259)
                      +|+++||||+|+||++++++|+++|++ |+++ .|+.....+..+... ...++.. +.+|+++.+            +.
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFA-LAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            478999999999999999999999998 8887 665332221111111 1234566 899999877            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHH----HHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~----~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|+|||+||.....    ....+++..+++|+.++.++++    .+++.+. +||++||...+.               
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~---------------  144 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGIL---------------  144 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH---------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhcc---------------
Confidence            899999999976431    1234567889999999666555    4455666 999999986543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+.+.++.+.   +++++++||+.++++.....    ............+         ...+
T Consensus       145 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~---------~~~~  210 (245)
T 2ph3_A          145 -GNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERL----PQEVKEAYLKQIP---------AGRF  210 (245)
T ss_dssp             -CCSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS----CHHHHHHHHHTCT---------TCSC
T ss_pred             -CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhc----CHHHHHHHHhcCC---------CCCC
Confidence             12234679999999999999988765   89999999999998753211    1122222222221         1347


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ++++|+|+++++++
T Consensus       211 ~~~~dva~~~~~l~  224 (245)
T 2ph3_A          211 GRPEEVAEAVAFLV  224 (245)
T ss_dssp             BCHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHh
Confidence            89999999998875

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.91  E-value=1.1e-22  Score=158.60  Aligned_cols=196  Identities=17%  Similarity=0.158  Sum_probs=146.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~v  101 (259)
                      .++|+++||||++.||+++++.|+++|++ |++.+|+.+.....     ...++..+.+|+++++        +.++|++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~-Vv~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiL   82 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAE-VVALGLDADGVHAP-----RHPRIRREELDITDSQRLQRLFEALPRLDVL   82 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTSTTSC-----CCTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHhhh-----hcCCeEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            37899999999999999999999999999 99999865443321     1357889999999988        7899999


Q ss_pred             EEccCCCCcc--ccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCc
Q 025022          102 YHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSC  175 (259)
Q Consensus       102 i~~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~  175 (259)
                      |||||...+.  ...++++..+++|+.++..+.+++.+    .+.+||++||.....                +......
T Consensus        83 VNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~----------------~~~~~~~  146 (242)
T 4b79_A           83 VNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTF----------------GSADRPA  146 (242)
T ss_dssp             EECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTS----------------CCSSCHH
T ss_pred             EECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccC----------------CCCCCHH
Confidence            9999976541  23345788999999999988887643    344999999986443                3334467


Q ss_pred             hHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHH
Q 025022          176 YDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       176 Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      |+.+|.+...+.+.++.+.   ||++..|.||.+..|........  ....+.+.+..|+..         +...+|+|.
T Consensus       147 Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~--~~~~~~~~~~~PlgR---------~g~peeiA~  215 (242)
T 4b79_A          147 YSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKAD--VEATRRIMQRTPLAR---------WGEAPEVAS  215 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCC--HHHHHHHHHTCTTCS---------CBCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCC--HHHHHHHHhcCCCCC---------CcCHHHHHH
Confidence            9999999999999998764   79999999999987753211111  223344444444333         447799999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      ++++|+
T Consensus       216 ~v~fLa  221 (242)
T 4b79_A          216 AAAFLC  221 (242)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999986

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.91  E-value=7.8e-24  Score=169.77  Aligned_cols=202  Identities=16%  Similarity=0.107  Sum_probs=148.4

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc-----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~-----------   94 (259)
                      ..++++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+++. ...++.++.+|+++.+           
T Consensus        21 ~~~l~gk~~lVTGas~gIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   99 (271)
T 4ibo_A           21 IFDLGGRTALVTGSSRGLGRAMAEGLAVAGAR-ILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDE   99 (271)
T ss_dssp             GGCCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            34567899999999999999999999999998 9999886443332222221 1347889999999987           


Q ss_pred             -cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 -LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       +.++|++||+||.....    ...++++..+++|+.++.++++++.+    .+. +||++||...+.            
T Consensus       100 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~------------  167 (271)
T 4ibo_A          100 QGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSEL------------  167 (271)
T ss_dssp             HTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------
T ss_pred             HCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCC------------
Confidence             45899999999976432    23345678899999999999777643    455 999999976543            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCc
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVV--SNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  239 (259)
                          +..+...|+.+|.+.+.+.+.++.+   +++++..++||.+.++...    ...  +.+........++       
T Consensus       168 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p~-------  232 (271)
T 4ibo_A          168 ----ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQ----ALIDNPEFDAWVKARTPA-------  232 (271)
T ss_dssp             ----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH----HHHHCHHHHHHHHHHSTT-------
T ss_pred             ----CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchh----hcccCHHHHHHHHhcCCC-------
Confidence                3345578999999999999999876   5899999999999887521    111  1222223322222       


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                        ..+..++|+|+++++++
T Consensus       233 --~r~~~pedva~~v~~L~  249 (271)
T 4ibo_A          233 --KRWGKPQELVGTAVFLS  249 (271)
T ss_dssp             --CSCBCGGGGHHHHHHHH
T ss_pred             --CCCcCHHHHHHHHHHHh
Confidence              23568899999998875

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.91  E-value=1.3e-23  Score=165.77  Aligned_cols=187  Identities=18%  Similarity=0.107  Sum_probs=141.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----c------CCcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L------IEVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~------~~~d~  100 (259)
                      +|+++||||+|+||++++++|+++|++ |++++|+.. .          ..+.++.+|+++.+     +      .++|+
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~-V~~~~r~~~-~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~   69 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYR-VVVLDLRRE-G----------EDLIYVEGDVTREEDVRRAVARAQEEAPLFA   69 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCC-S----------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEccCcc-c----------cceEEEeCCCCCHHHHHHHHHHHHhhCCceE
Confidence            579999999999999999999999998 999888643 1          24578999999877     2      37999


Q ss_pred             EEEccCCCCccccc----c----ChhHHHHHhhhhHHHHHHHHHHh----C------C-eEEEEecceeecCCCCCCCCC
Q 025022          101 IYHLACPASPIFYK----Y----NPVKTIKTNVIGTLNMLGLAKRV----G------A-RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus       101 vi~~a~~~~~~~~~----~----~~~~~~~~n~~~~~~l~~~~~~~----~------~-~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                      +||+||........    .    +++..+++|+.++.++++++.+.    +      . +||++||...+.         
T Consensus        70 li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~---------  140 (242)
T 1uay_A           70 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE---------  140 (242)
T ss_dssp             EEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH---------
T ss_pred             EEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc---------
Confidence            99999975432111    1    56788999999999999988653    1      1 899999998775         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                             +..+...|+.+|.+.+.+.+.++.+.   +++++++||+.++++.....    ...+........++  .   
T Consensus       141 -------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~~~~~~~~~~~--~---  204 (242)
T 1uay_A          141 -------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL----PEKAKASLAAQVPF--P---  204 (242)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS----CHHHHHHHHTTCCS--S---
T ss_pred             -------CCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc----chhHHHHHHhhCCC--c---
Confidence                   23345789999999999999988764   89999999999999753221    12222333333221  0   


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                         ..+++++|+|+++++++
T Consensus       205 ---~~~~~~~dva~~~~~l~  221 (242)
T 1uay_A          205 ---PRLGRPEEYAALVLHIL  221 (242)
T ss_dssp             ---CSCCCHHHHHHHHHHHH
T ss_pred             ---ccCCCHHHHHHHHHHHh
Confidence               23779999999998875

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.91  E-value=7.7e-24  Score=167.34  Aligned_cols=197  Identities=14%  Similarity=0.020  Sum_probs=141.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhhhcc-CCCceeEeecccCccc------------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +|+++||||+|+||++++++|+++|++ |+++ .|+........+... ...++.++.+|+++.+            +.+
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~-v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999998 7774 664322211111110 1246888999999877            348


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ....+++..+++|+.++.++++++.+    .+. +||++||...+.                
T Consensus        80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----------------  143 (244)
T 1edo_A           80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI----------------  143 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------------
T ss_pred             CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcC----------------
Confidence            99999999976431    12345677899999999999888765    355 999999986543                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +..+...|+.+|.+.+.+.+.++.+   .+++++++||++++++....    ....+........+         ...++
T Consensus       144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~---------~~~~~  210 (244)
T 1edo_A          144 GNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK----LGEDMEKKILGTIP---------LGRTG  210 (244)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT----TCHHHHHHHHTSCT---------TCSCB
T ss_pred             CCCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhh----cChHHHHHHhhcCC---------CCCCC
Confidence            2233467999999999999988876   48999999999999864221    11122222222221         12478


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      +++|+|+++++++
T Consensus       211 ~~~dva~~~~~l~  223 (244)
T 1edo_A          211 QPENVAGLVEFLA  223 (244)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998875

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.91  E-value=1.5e-23  Score=167.69  Aligned_cols=200  Identities=15%  Similarity=0.043  Sum_probs=146.1

Q ss_pred             cCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||+  |+||+++++.|+++|++ |++++|+. ...+..++... .....++.+|+++.+            
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV   84 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCE-EEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHH
Confidence            567899999999  99999999999999998 99888865 22222222211 123478899999976            


Q ss_pred             cCCcCEEEEccCCCCc--------c-ccccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASP--------I-FYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~--------~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                      +.++|++||+||....        + ....+++..+++|+.++.++++++.+.-   .+||++||...+.          
T Consensus        85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------  154 (265)
T 1qsg_A           85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------  154 (265)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS----------
T ss_pred             cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc----------
Confidence            3479999999997542        1 2234567899999999999999997652   3999999976553          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.+.+.+.++.+.   ++++++++||+++++......  ....+........++       
T Consensus       155 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~~~p~-------  219 (265)
T 1qsg_A          155 ------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIK--DFRKMLAHCEAVTPI-------  219 (265)
T ss_dssp             ------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGST--THHHHHHHHHHHSTT-------
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhccc--ccHHHHHHHHhcCCC-------
Confidence                  22344679999999999999998775   899999999999998632211  122233333222221       


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                        ..+.+++|+|+++++++
T Consensus       220 --~~~~~~~dva~~v~~l~  236 (265)
T 1qsg_A          220 --RRTVTIEDVGNSAAFLC  236 (265)
T ss_dssp             --SSCCCHHHHHHHHHHHT
T ss_pred             --CCCCCHHHHHHHHHHHh
Confidence              13668999999998875

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.91  E-value=2.1e-23  Score=166.97  Aligned_cols=202  Identities=18%  Similarity=0.103  Sum_probs=144.1

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc--cCCCceeEeecccCccc----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~dl~~~~----------   94 (259)
                      ...+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+..  ....++.++.+|+++.+          
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   94 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK   94 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            34467899999999999999999999999998 999988643322211111  01246788999999976          


Q ss_pred             --cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEeccee-ecCCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEV-YGDPLVHPQDES  162 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~-~~~~~~~~~~e~  162 (259)
                        +.++|++||+||......    ...+++..+++|+.++.++++++.    +.+. +||++||..+ +.          
T Consensus        95 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~----------  164 (267)
T 1vl8_A           95 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV----------  164 (267)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC----------
T ss_pred             HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhcc----------
Confidence              358999999999764321    223457789999999999988774    3344 9999999762 21          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecC
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVV--SNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  237 (259)
                            +..+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++...    ...  ...........+      
T Consensus       165 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~p------  228 (267)
T 1vl8_A          165 ------TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTE----AVFSDPEKLDYMLKRIP------  228 (267)
T ss_dssp             ------CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTH----HHHTCHHHHHHHHHTCT------
T ss_pred             ------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccc----ccccChHHHHHHHhhCC------
Confidence                  2334568999999999999998876   4899999999999886521    111  112222222222      


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                         ...+++++|+|+++++++
T Consensus       229 ---~~~~~~p~dvA~~v~~l~  246 (267)
T 1vl8_A          229 ---LGRTGVPEDLKGVAVFLA  246 (267)
T ss_dssp             ---TSSCBCGGGGHHHHHHHH
T ss_pred             ---CCCCcCHHHHHHHHHHHc
Confidence               123678999999999875

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.91  E-value=1.4e-23  Score=166.83  Aligned_cols=203  Identities=18%  Similarity=0.132  Sum_probs=142.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||++++++|+++|++ |++++|+.....+..++.  ..++.++.+|+++.+            +.
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRRLG   79 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            367899999999999999999999999998 999988643222222221  246889999999977            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      ++|++||+||.....    ...++++..+++|+.++..+++++.+    .+.+||++||...+.                
T Consensus        80 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------  143 (253)
T 1hxh_A           80 TLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL----------------  143 (253)
T ss_dssp             SCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcC----------------
Confidence            789999999975431    12345678899999988887776533    334999999987664                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---h--CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---H--GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~--~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                      +..+...|+.+|.+.+.+.+.++.+   +  +++++++||++++++.......   ............     .......
T Consensus       144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~~~~~~~~-----~~~p~~~  215 (253)
T 1hxh_A          144 PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLP---KGVSKEMVLHDP-----KLNRAGR  215 (253)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSC---TTCCHHHHBCBT-----TTBTTCC
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccc---hhhhHHHHhhhh-----ccCccCC
Confidence            3344568999999999999998766   3  8999999999999864110000   000000011100     0111234


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +.+++|+|+++++++
T Consensus       216 ~~~~~dvA~~~~~l~  230 (253)
T 1hxh_A          216 AYMPERIAQLVLFLA  230 (253)
T ss_dssp             EECHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHc
Confidence            789999999999875

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.91  E-value=3.3e-23  Score=167.43  Aligned_cols=200  Identities=12%  Similarity=0.006  Sum_probs=144.9

Q ss_pred             cCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||+  |+||+++++.|+++|++ |++++|+.. ..+.++.... ...+.++.+|+++.+            
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~-V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQ-LAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEEN   96 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCE-EEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCE-EEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            567899999999  99999999999999998 988888653 1122222111 124778999999977            


Q ss_pred             cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEecceeecCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                      +.++|++||+||....        .....+++..+++|+.++.++++++.+.    +.+||++||...+.          
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------  166 (285)
T 2p91_A           97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK----------  166 (285)
T ss_dssp             TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS----------
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc----------
Confidence            4589999999997542        1223456789999999999999998654    23999999976543          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++......  ....+........++       
T Consensus       167 ------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~~~p~-------  231 (285)
T 2p91_A          167 ------VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSIT--GFHLLMEHTTKVNPF-------  231 (285)
T ss_dssp             ------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CT--THHHHHHHHHHHSTT-------
T ss_pred             ------CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhccc--chHHHHHHHHhcCCC-------
Confidence                  22344679999999999999988764   899999999999998643211  112222222222221       


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                        ..+.+++|+|+++++++
T Consensus       232 --~~~~~~~dva~~~~~l~  248 (285)
T 2p91_A          232 --GKPITIEDVGDTAVFLC  248 (285)
T ss_dssp             --SSCCCHHHHHHHHHHHT
T ss_pred             --CCCcCHHHHHHHHHHHc
Confidence              12568999999998875

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.91  E-value=2.3e-23  Score=164.80  Aligned_cols=199  Identities=17%  Similarity=0.081  Sum_probs=141.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC-CCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r-~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++|+++||||+|+||+++++.|+++|++ |+++.| +.....+..++.. ...++.++.+|+++.+            +
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGAN-VVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF   80 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            56789999999999999999999999998 888887 3222111111111 1246888999999987            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ...++++..+++|+.++..+++++    ++.+. +||++||...+.              
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  146 (246)
T 2uvd_A           81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVT--------------  146 (246)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH--------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcC--------------
Confidence            5899999999976431    223456788999999977777665    34566 999999986553              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++.........    ........+         ...
T Consensus       147 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~----~~~~~~~~p---------~~~  211 (246)
T 2uvd_A          147 --GNPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENI----KAEMLKLIP---------AAQ  211 (246)
T ss_dssp             --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTTH----HHHHHHTCT---------TCS
T ss_pred             --CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHHH----HHHHHhcCC---------CCC
Confidence              2233467999999999999988765   4899999999999887533211111    111222211         123


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +++++|+|+++++++
T Consensus       212 ~~~~~dvA~~~~~l~  226 (246)
T 2uvd_A          212 FGEAQDIANAVTFFA  226 (246)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHc
Confidence            779999999998875

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.91  E-value=9e-24  Score=168.88  Aligned_cols=203  Identities=13%  Similarity=0.127  Sum_probs=146.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||+++++.|+++|++ |++++|+.....+..++.. ...++.++.+|+++.+            +.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGAD-LVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56899999999999999999999999998 9999886443222222211 1357889999999987            46


Q ss_pred             CcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||....     ....++++..+++|+.++.++++++.+    .+.+||++||...+.               
T Consensus        88 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------  152 (264)
T 3ucx_A           88 RVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRH---------------  152 (264)
T ss_dssp             CCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGC---------------
T ss_pred             CCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhcc---------------
Confidence            89999999986422     122345678899999999999887643    345999999987654               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCc-------cHHHHHHHHHHcCCCeEEecC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDG-------RVVSNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  237 (259)
                       +..+...|+.+|.+.+.+.+.++.+   ++++++.++||.++++.......       .....+........       
T Consensus       153 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  224 (264)
T 3ucx_A          153 -SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGS-------  224 (264)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS-------
T ss_pred             -CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccC-------
Confidence             3344568999999999999999876   58999999999998864210000       00011122222222       


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                        ....+.+++|+|+++++++
T Consensus       225 --p~~r~~~p~dvA~~v~~L~  243 (264)
T 3ucx_A          225 --DLKRLPTEDEVASAILFMA  243 (264)
T ss_dssp             --SSSSCCBHHHHHHHHHHHH
T ss_pred             --CcccCCCHHHHHHHHHHHc
Confidence              2335779999999999876

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.91  E-value=4.9e-24  Score=170.83  Aligned_cols=200  Identities=13%  Similarity=0.016  Sum_probs=146.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      .+++++++||||+|+||+++++.|+++|++ |++++|+.....+..+... ...++..+.+|+++.+            +
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAM-VIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF  103 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            367899999999999999999999999998 9999886433222211111 1246788999999987            4


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ...++++..+++|+.++.++++++.    +.+. +||++||...+.              
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--------------  169 (270)
T 3ftp_A          104 GALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA--------------  169 (270)
T ss_dssp             SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC--------------
Confidence            5899999999976532    2234567889999999999998874    3444 999999987654              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +..+...|+.+|.+.+.+.+.++.+   .++++++++||.+.++....    .............+         ...
T Consensus       170 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~p---------~~r  234 (270)
T 3ftp_A          170 --GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKG----LPQEQQTALKTQIP---------LGR  234 (270)
T ss_dssp             --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHH----SCHHHHHHHHTTCT---------TCS
T ss_pred             --CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhh----cCHHHHHHHHhcCC---------CCC
Confidence              3344578999999999999998876   48999999999998763211    11112222222222         234


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +.+++|+|+++++++
T Consensus       235 ~~~pedvA~~v~~L~  249 (270)
T 3ftp_A          235 LGSPEDIAHAVAFLA  249 (270)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            678999999998875

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.91  E-value=5.3e-24  Score=172.26  Aligned_cols=223  Identities=16%  Similarity=0.113  Sum_probs=150.7

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC--------cchhhh---c--cCCCceeEeecccCcc
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--------KDNLRK---W--IGHPRFELIRHDVTEP   93 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--------~~~~~~---~--~~~~~~~~~~~dl~~~   93 (259)
                      +..+++++++||||+|+||+++++.|+++|++ |++++|+....        .+.++.   .  ....++.++.+|+++.
T Consensus         5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   83 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDR   83 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCH
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCH
Confidence            44567899999999999999999999999998 88888763221        111111   1  1135788999999998


Q ss_pred             c------------cCCcCEEEEccCCCCcc--ccccChhHHHHHhhhhHHHHHHHHHHh--CC-eEEEEecceeecCCCC
Q 025022           94 L------------LIEVDQIYHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLV  156 (259)
Q Consensus        94 ~------------~~~~d~vi~~a~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i~~Ss~~~~~~~~~  156 (259)
                      +            +.++|++||+||.....  ...++++..+++|+.++.++++++.+.  +. +||++||...+.....
T Consensus        84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~  163 (287)
T 3pxx_A           84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQ  163 (287)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccccc
Confidence            7            35899999999976542  234557789999999999999999765  22 9999999876543222


Q ss_pred             CCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe-
Q 025022          157 HPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPL-  232 (259)
Q Consensus       157 ~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~-  232 (259)
                      .+..|..     +..+...|+.+|.+.+.+.+.++.+.   +++++.++||++.++.....   ............... 
T Consensus       164 ~~~~~~~-----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~~~~  235 (287)
T 3pxx_A          164 PPGAGGP-----QGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSA---PMYRQFRPDLEAPSRA  235 (287)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSH---HHHHHHCTTSSSCCHH
T ss_pred             ccccccc-----CCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc---chhhhhccccccchhH
Confidence            2222221     22445679999999999999998875   89999999999998764310   000000000000000 


Q ss_pred             ----EEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          233 ----TVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       233 ----~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ...........+.+++|+|+++++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~p~dva~~v~fL~  265 (287)
T 3pxx_A          236 DALLAFPAMQAMPTPYVEASDISNAVCFLA  265 (287)
T ss_dssp             HHHHHGGGGCSSSCSCBCHHHHHHHHHHHH
T ss_pred             HHHhhhhhhcccCCCCCCHHHHHhhHheec
Confidence                00000011146889999999999886

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.91  E-value=1.3e-23  Score=168.75  Aligned_cols=200  Identities=15%  Similarity=0.050  Sum_probs=137.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ++++++||||+|+||++++++|+++|++ |+++ .|+........+... ...++.++.+|+++.+            +.
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWR-VGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4678999999999999999999999998 7666 443322221111111 1357889999999977            35


Q ss_pred             CcCEEEEccCCCCc-c----ccccChhHHHHHhhhhHHHHHHHHHHh-------CC-eEEEEecceeecCCCCCCCCCCC
Q 025022           97 EVDQIYHLACPASP-I----FYKYNPVKTIKTNVIGTLNMLGLAKRV-------GA-RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~-~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                      ++|+|||+||.... .    ...++++..+++|+.++..+++++.+.       +. +||++||...+..          
T Consensus       104 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------  173 (272)
T 4e3z_A          104 RLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILG----------  173 (272)
T ss_dssp             CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHC----------
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccC----------
Confidence            89999999997643 1    133456788999999999999887653       23 8999999876542          


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                           .......|+.+|.+.+.+++.++.+.   ++++++++||.+.++.....   .............         .
T Consensus       174 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~~---------~  236 (272)
T 4e3z_A          174 -----SATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASG---GLPDRAREMAPSV---------P  236 (272)
T ss_dssp             -----CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---------------------CC---------T
T ss_pred             -----CCCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCccccc---CChHHHHHHhhcC---------C
Confidence                 22234579999999999999988765   89999999999998753210   1111111111111         2


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+.+++|+|+++++++
T Consensus       237 ~~~~~~~edvA~~i~~l~  254 (272)
T 4e3z_A          237 MQRAGMPEEVADAILYLL  254 (272)
T ss_dssp             TSSCBCHHHHHHHHHHHH
T ss_pred             cCCCcCHHHHHHHHHHHh
Confidence            234668999999999875

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.91  E-value=2.6e-24  Score=176.10  Aligned_cols=194  Identities=15%  Similarity=0.144  Sum_probs=136.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhh--ccCCCceeEeecccCccc-----cCCcCEEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRK--WIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~--~~~~~~~~~~~~dl~~~~-----~~~~d~vi~  103 (259)
                      +|+|+||||||+||++++++|+++|++ |+++.|+.... .+..+.  .+...+++++.+|+.+.+     +.++|+|||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~   82 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHP-TYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   82 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCc-EEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence            578999999999999999999999998 99999975432 111111  112357899999999976     678999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCC-CCchHHHH
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGK  180 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~sK  180 (259)
                      +++....           ..|+.++.+++++|++.+ + +||+ |   +|+......  +      .+..| ...| .+|
T Consensus        83 ~a~~~~~-----------~~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~~~~--~------~~~~p~~~~y-~sK  138 (313)
T 1qyd_A           83 ALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDPDIM--E------HALQPGSITF-IDK  138 (313)
T ss_dssp             CCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCTTSC--C------CCCSSTTHHH-HHH
T ss_pred             CCccccc-----------hhhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCcccc--c------cCCCCCcchH-HHH
Confidence            9986532           126788899999999998 7 8885 3   344321111  1      12233 3568 999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ...|++++    +.+++++++||+.++|+....... ...   .....++.+.++++++..++|++++|+|+++..++
T Consensus       139 ~~~e~~~~----~~g~~~~ilrp~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l  208 (313)
T 1qyd_A          139 RKVRRAIE----AASIPYTYVSSNMFAGYFAGSLAQ-LDG---HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSI  208 (313)
T ss_dssp             HHHHHHHH----HTTCCBCEEECCEEHHHHTTTSSC-TTC---CSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHT
T ss_pred             HHHHHHHH----hcCCCeEEEEeceecccccccccc-ccc---cccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHH
Confidence            99998874    568999999999988743211000 000   00123334556777888999999999999998775

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.91  E-value=1e-23  Score=168.28  Aligned_cols=208  Identities=11%  Similarity=0.038  Sum_probs=141.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---CCCceeEeecccCccc-----c------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL-----L------   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~-----~------   95 (259)
                      +++++++||||+|+||+++++.|+++|++ |++++|+.....+..++..   ...++.++.+|+++.+     +      
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGAR-LLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDL   83 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            56789999999999999999999999998 9999886433222211111   1226889999999987     1      


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ...++++..+++|+.++..+++++    ++.+. +||++||...+.              
T Consensus        84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  149 (260)
T 2z1n_A           84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLR--------------  149 (260)
T ss_dssp             TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred             cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcC--------------
Confidence            1399999999965431    123456788999999997776665    35566 999999987664              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCcee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVV--SNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                        +..+...|+.+|.+.+.+.+.++.+.   ++++++++||+++++..........  ..+.....    ...+......
T Consensus       150 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~  223 (260)
T 2z1n_A          150 --PWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEA----LKSMASRIPM  223 (260)
T ss_dssp             --CCTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC---------------------------CCTT
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHH----HHHHHhcCCC
Confidence              33345689999999999999988764   8999999999999876321000000  00000000    0000011112


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+.+++|+|+++++++
T Consensus       224 ~r~~~~~dva~~v~~l~  240 (260)
T 2z1n_A          224 GRVGKPEELASVVAFLA  240 (260)
T ss_dssp             SSCCCHHHHHHHHHHHT
T ss_pred             CCccCHHHHHHHHHHHh
Confidence            34779999999999876

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.91  E-value=3e-23  Score=168.47  Aligned_cols=203  Identities=11%  Similarity=-0.033  Sum_probs=148.6

Q ss_pred             ccccCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc---------
Q 025022           27 KFFQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~---------   94 (259)
                      +..+++++++||||+|  +||+++++.|+++|++ |++++|+... .+.++... ....+.++.+|+++.+         
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~-V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  102 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAE-VALTYLSETF-KKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVL  102 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGG-HHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHH
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCE-EEEEeCChHH-HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH
Confidence            3446789999999997  9999999999999999 9998886432 12222211 1135688999999987         


Q ss_pred             ---cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHhC--C-eEEEEecceeecCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                         +.++|++||+||....        +...++++..+++|+.++.++++++...-  . +||++||...+.        
T Consensus       103 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~--------  174 (296)
T 3k31_A          103 AEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK--------  174 (296)
T ss_dssp             HHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS--------
T ss_pred             HHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc--------
Confidence               3689999999997642        22334577899999999999999987642  2 999999987554        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (259)
                              +......|+.+|.+.+.+.+.++.+.   +++++.++||.+.++.....  ..............++     
T Consensus       175 --------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~p~-----  239 (296)
T 3k31_A          175 --------VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI--SDFHYILTWNKYNSPL-----  239 (296)
T ss_dssp             --------CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC--HHHHHHHHHHHHHSTT-----
T ss_pred             --------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc--cchHHHHHHHHhcCCC-----
Confidence                    33445689999999999999998764   79999999999998764321  1112223333322222     


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ..+..++|+|+++++++
T Consensus       240 ----~r~~~pedvA~~v~fL~  256 (296)
T 3k31_A          240 ----RRNTTLDDVGGAALYLL  256 (296)
T ss_dssp             ----SSCCCHHHHHHHHHHHH
T ss_pred             ----CCCCCHHHHHHHHHHHc
Confidence                13567899999999876

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.91  E-value=1.8e-23  Score=166.96  Aligned_cols=202  Identities=14%  Similarity=0.088  Sum_probs=138.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++++++||||+|+||++++++|+++|++ |++++|+.....+..++.  ..++.++.+|+++.+            +.
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   82 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAK-VVIVDRDKAGAERVAGEI--GDAALAVAADISKEADVDAAVEAALSKFG   82 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            356899999999999999999999999998 999998654333222222  347889999999987            35


Q ss_pred             CcCEEEEccCCCCc-c----ccccChhHHHHHhhhhHHHHHHHHHHh----C----C-eEEEEecceeecCCCCCCCCCC
Q 025022           97 EVDQIYHLACPASP-I----FYKYNPVKTIKTNVIGTLNMLGLAKRV----G----A-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~----~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                      ++|++||+||.... .    ...++++..+++|+.++.++++++.+.    +    . +||++||...+.          
T Consensus        83 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------  152 (261)
T 3n74_A           83 KVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR----------  152 (261)
T ss_dssp             CCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS----------
T ss_pred             CCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC----------
Confidence            89999999997642 1    123456778999999999888876432    1    2 799999986543          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +......|+.+|.+.+.+.+.++.+   ++++++.++|+.+.++................         +....
T Consensus       153 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---------~~~~~  217 (261)
T 3n74_A          153 ------PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKK---------FRDSI  217 (261)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------------C
T ss_pred             ------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHH---------HhhcC
Confidence                  3344567999999999999999877   48999999999998875321100000111111         11112


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....+++++|+|+++++++
T Consensus       218 ~~~~~~~~~dva~~~~~l~  236 (261)
T 3n74_A          218 PMGRLLKPDDLAEAAAFLC  236 (261)
T ss_dssp             TTSSCCCHHHHHHHHHHHT
T ss_pred             CcCCCcCHHHHHHHHHHHc
Confidence            2345789999999998875

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.91  E-value=1.1e-23  Score=170.88  Aligned_cols=202  Identities=17%  Similarity=0.103  Sum_probs=146.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC-CCcchhhhcc--CCCceeEeecccCccc-----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWI--GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~--~~~~~~~~~~dl~~~~-----------   94 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++.+|+.. ...+.+....  ...++.++.+|+++.+           
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999999998 888877532 1112222111  1357889999999977           


Q ss_pred             -cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 -LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                       +.++|++||+||....     +...++++..+++|+.++.++++++.+.-   .+||++||...+.             
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~-------------  191 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ-------------  191 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS-------------
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc-------------
Confidence             4689999999997532     11334567899999999999999997653   2999999988765             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +......|+.+|.+.+.+.+.++.+.   +++++.++||.+.++......  ........         +.......
T Consensus       192 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~--~~~~~~~~---------~~~~~p~~  257 (294)
T 3r3s_A          192 ---PSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGG--QTQDKIPQ---------FGQQTPMK  257 (294)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTT--SCGGGSTT---------TTTTSTTS
T ss_pred             ---CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccC--CCHHHHHH---------HHhcCCCC
Confidence               33445679999999999999998775   899999999999986411000  00000000         11112233


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+..++|+|+++++++
T Consensus       258 r~~~p~dvA~~v~~L~  273 (294)
T 3r3s_A          258 RAGQPAELAPVYVYLA  273 (294)
T ss_dssp             SCBCGGGGHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            5678999999999876

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.91  E-value=2.4e-23  Score=167.55  Aligned_cols=205  Identities=13%  Similarity=0.099  Sum_probs=147.9

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~----------   94 (259)
                      +..+++++++||||+|+||+++++.|+++|++ |++++|+.....+..+++.  ...++.++.+|+++.+          
T Consensus        22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~  100 (277)
T 4fc7_A           22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCH-TVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQAL  100 (277)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            33467899999999999999999999999998 9998886443322222221  1357889999999987          


Q ss_pred             --cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                        +.++|++||+||.....    ...++++..+++|+.++.++++++.+    .+. +||++||...+.           
T Consensus       101 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-----------  169 (277)
T 4fc7_A          101 KEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR-----------  169 (277)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH-----------
T ss_pred             HHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC-----------
Confidence              45899999999965431    23345778999999999999988743    334 999999987654           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                           +......|+.+|.+.+.+.+.++.+.   ++++..++||.+.++....... .............++        
T Consensus       170 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~-~~~~~~~~~~~~~p~--------  235 (277)
T 4fc7_A          170 -----GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLG-GPQASLSTKVTASPL--------  235 (277)
T ss_dssp             -----TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHS-CCHHHHHHHHHTSTT--------
T ss_pred             -----CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhcc-CCHHHHHHHhccCCC--------
Confidence                 33344679999999999999998764   7999999999999863100000 001222222222222        


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                       ..+..++|+|+++++++
T Consensus       236 -~r~~~p~dvA~~v~fL~  252 (277)
T 4fc7_A          236 -QRLGNKTEIAHSVLYLA  252 (277)
T ss_dssp             -SSCBCHHHHHHHHHHHH
T ss_pred             -CCCcCHHHHHHHHHHHc
Confidence             23568999999999876

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.91  E-value=5.3e-24  Score=174.58  Aligned_cols=166  Identities=16%  Similarity=0.049  Sum_probs=125.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc-----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~-----------   94 (259)
                      ++++++|+||||+|+||.+++++|+++|++ |++++|+........+.+   .....+.++.+|+++.+           
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~-Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   83 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCK-VAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEA   83 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            466889999999999999999999999998 999998654332222221   11127889999999987           


Q ss_pred             -cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----------CC-eEEEEecceeecCCCCCC
Q 025022           95 -LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPLVHP  158 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-~~i~~Ss~~~~~~~~~~~  158 (259)
                       +.++|+|||+||.....    ...++++..+++|+.++.++++++.+.          +. +||++||...+.      
T Consensus        84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~------  157 (319)
T 3ioy_A           84 RFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL------  157 (319)
T ss_dssp             HTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC------
T ss_pred             hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc------
Confidence             46899999999975432    123456789999999999998887542          23 899999987664      


Q ss_pred             CCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC
Q 025022          159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM  211 (259)
Q Consensus       159 ~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~  211 (259)
                                +......|+.||.+.+.+.+.++.+   .++++++++||.+.++..
T Consensus       158 ----------~~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~  203 (319)
T 3ioy_A          158 ----------AAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIY  203 (319)
T ss_dssp             ----------CCSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC----
T ss_pred             ----------CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcc
Confidence                      2334467999999888888877655   489999999999988753

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.91  E-value=4.2e-24  Score=169.56  Aligned_cols=200  Identities=15%  Similarity=0.076  Sum_probs=142.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||+++++.|+++|++ |++++|+........+......++.++.+|+++.+            +.+
T Consensus         4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (251)
T 1zk4_A            4 LDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            67899999999999999999999999998 99998864332222222211247889999999876            347


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhC--CeEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      +|+|||+||.....    ...++++..+++|+.++..+++.+.    +.+  .+||++||...+.               
T Consensus        83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------------  147 (251)
T 1zk4_A           83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV---------------  147 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS---------------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhcc---------------
Confidence            99999999975431    1233467789999998887766653    444  3899999987664               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHH-----HhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHR-----QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~-----~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                       +..+...|+.+|.+.+.+++.++.     ..+++++++||++++++......    ........ ...       ....
T Consensus       148 -~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~----~~~~~~~~-~~~-------~~~~  214 (251)
T 1zk4_A          148 -GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP----GAEEAMSQ-RTK-------TPMG  214 (251)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTST----THHHHHTS-TTT-------CTTS
T ss_pred             -CCCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcC----chhhhHHH-hhc-------CCCC
Confidence             223456899999999999988775     34799999999999987532110    01011100 111       1123


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++++|+|+++++++
T Consensus       215 ~~~~~~dva~~~~~l~  230 (251)
T 1zk4_A          215 HIGEPNDIAYICVYLA  230 (251)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            4789999999998875

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.91  E-value=7.4e-24  Score=172.73  Aligned_cols=203  Identities=15%  Similarity=0.135  Sum_probs=143.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc------CCCceeEeecccCccc--------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI------GHPRFELIRHDVTEPL--------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~dl~~~~--------   94 (259)
                      .+++++++||||+|+||++++++|+++|++ |++++|+........++..      ...++.++.+|+++.+        
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~   93 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   93 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence            367899999999999999999999999998 9999886433222111111      1347889999999977        


Q ss_pred             ----cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCCCCCCCCC
Q 025022           95 ----LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 ----~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                          +.++|+|||+||.....    ....+++..+++|+.++.++++++.+.    +. +||++||.. +.         
T Consensus        94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~---------  163 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KA---------  163 (303)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TT---------
T ss_pred             HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-cc---------
Confidence                34799999999964321    123346778999999999999987652    23 899999987 32         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                             +......|+.+|.+.+.+.+.++.+.   +++++++||++++++............+........        
T Consensus       164 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--------  228 (303)
T 1yxm_A          164 -------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI--------  228 (303)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS--------
T ss_pred             -------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcC--------
Confidence                   22334679999999999999988774   899999999999998421111100011111111111        


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                       ....+++++|+|+++++++
T Consensus       229 -p~~~~~~~~dvA~~i~~l~  247 (303)
T 1yxm_A          229 -PAKRIGVPEEVSSVVCFLL  247 (303)
T ss_dssp             -TTSSCBCTHHHHHHHHHHH
T ss_pred             -cccCCCCHHHHHHHHHHHh
Confidence             1124779999999998875

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=99.91  E-value=5.4e-23  Score=161.99  Aligned_cols=201  Identities=13%  Similarity=0.004  Sum_probs=146.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      ++++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++.. ...++..+.+|+++++            +
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~-Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSI-VVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            478999999999999999999999999998 9999886543332222221 1357889999999988            6


Q ss_pred             CCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||+||....     +...++++..+++|+.++..+.+++.    +.+. +||++||.....             
T Consensus        83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~-------------  149 (254)
T 4fn4_A           83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIR-------------  149 (254)
T ss_dssp             SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC-------------
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcC-------------
Confidence            789999999996432     12335678899999999998887763    4455 999999986443             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcc---HHHHHHHHHHcCCCeEEecCCc
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGR---VVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                         +......|+.+|.+...+.+.++.+.   ||++..|.||.+-.|........   ....+....   .++.      
T Consensus       150 ---~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~---~~~~------  217 (254)
T 4fn4_A          150 ---GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLM---SLSS------  217 (254)
T ss_dssp             ---SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHH---TTCC------
T ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcC---CCCC------
Confidence               23344679999999999999998764   79999999999987643221111   111111111   1111      


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                         .+...+|+|.++++++
T Consensus       218 ---R~g~pediA~~v~fLa  233 (254)
T 4fn4_A          218 ---RLAEPEDIANVIVFLA  233 (254)
T ss_dssp             ---CCBCHHHHHHHHHHHH
T ss_pred             ---CCcCHHHHHHHHHHHh
Confidence               2447899999999986

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.91  E-value=3.1e-23  Score=167.45  Aligned_cols=167  Identities=16%  Similarity=0.042  Sum_probs=129.0

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~-----------   94 (259)
                      ..+++|+++||||+|+||+++++.|+++|++ |+++.|+.....+.....+  ...++.++.+|+++.+           
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~  103 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK  103 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999999998 8888886432212211111  1246888999999876           


Q ss_pred             -cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh--CC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           95 -LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                       +.++|++||+||.....    ...++++..+++|+.++.++++++.+.  +. +||++||...+..             
T Consensus       104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~-------------  170 (283)
T 1g0o_A          104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK-------------  170 (283)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS-------------
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccC-------------
Confidence             35899999999976431    123456788999999999999999876  44 9999999865431             


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                        ...+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++.
T Consensus       171 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~  215 (283)
T 1g0o_A          171 --AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDM  215 (283)
T ss_dssp             --SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHH
T ss_pred             --CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchh
Confidence              1123567999999999999998865   48999999999998863

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.91  E-value=1e-23  Score=175.20  Aligned_cols=187  Identities=13%  Similarity=0.101  Sum_probs=134.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecc-cCccc-----cCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD-VTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d-l~~~~-----~~~~d~vi~~  104 (259)
                      .+|+|+||||||+||+++++.|+++|++ |+++.|+.....  .+.+....+++++.+| +++.+     +.++|+|||+
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~--~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~   80 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHH-VRAQVHSLKGLI--AEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN   80 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCSCSHH--HHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCCChhh--HHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEc
Confidence            4689999999999999999999999998 999988654321  1111112478899999 98876     6789999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecce--eecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSE--VYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~--~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      ++...     .      ..|..+ .+++++|++.+ + +|||+||..  .|+                + .+...|+.+|
T Consensus        81 a~~~~-----~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~----------------~-~~~~~y~~sK  131 (352)
T 1xgk_A           81 TTSQA-----G------DEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYG----------------P-WPAVPMWAPK  131 (352)
T ss_dssp             CCSTT-----S------CHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTS----------------S-CCCCTTTHHH
T ss_pred             CCCCC-----c------HHHHHH-HHHHHHHHHcCCccEEEEeCCccccccC----------------C-CCCccHHHHH
Confidence            86431     0      235666 99999999999 7 999999975  232                1 2225699999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHH-HcCCCe--EEecCCceeeeeeeH-HHHHHHHHh
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQA-IRGEPL--TVQAPGTQTRSFCYV-SDMVCKSCF  256 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~v-~D~a~~~~~  256 (259)
                      ...|++++.    .+++++++||+ +||++......    .++... .....+  .++++++..++++|+ +|+|++++.
T Consensus       132 ~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~  202 (352)
T 1xgk_A          132 FTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPY----PLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQ  202 (352)
T ss_dssp             HHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSC----SSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHH
T ss_pred             HHHHHHHHH----cCCCEEEEecc-eecCCchhccc----ccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHH
Confidence            999999854    48999999976 68876432100    011101 122222  335667788999999 899999987


Q ss_pred             hh
Q 025022          257 LA  258 (259)
Q Consensus       257 ~l  258 (259)
                      ++
T Consensus       203 ~l  204 (352)
T 1xgk_A          203 IF  204 (352)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.91  E-value=4.9e-23  Score=165.17  Aligned_cols=207  Identities=16%  Similarity=0.057  Sum_probs=147.3

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~----------   94 (259)
                      +..+++|+++||||+|+||++++++|+++|++ |+++.++.....+.....+  ...++.++.+|+++.+          
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   91 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAK-VVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAV   91 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            33467899999999999999999999999998 8877664332222222211  1357889999999987          


Q ss_pred             --cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 --LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                        +.++|++||+||......    ..++++..+++|+.++.++++++.+.-   .+||++||......            
T Consensus        92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------  159 (270)
T 3is3_A           92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDF------------  159 (270)
T ss_dssp             HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTC------------
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccC------------
Confidence              458999999999764322    334577889999999999999987653   29999999752111            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-------C-ccHHHHHHHHHHcCCCeEE
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID-------D-GRVVSNFIAQAIRGEPLTV  234 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~-------~-~~~~~~~~~~~~~~~~~~~  234 (259)
                         +..+...|+.+|.+.+.+.+.++.+   +++++..++||.+.++.....       . ...............+   
T Consensus       160 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---  233 (270)
T 3is3_A          160 ---SVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASP---  233 (270)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHST---
T ss_pred             ---CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCC---
Confidence               3345578999999999999999877   489999999999988752100       0 0001111222222222   


Q ss_pred             ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          235 QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       235 ~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                            ...+.+++|+|+++++++
T Consensus       234 ------~~r~~~p~dvA~~v~~L~  251 (270)
T 3is3_A          234 ------LHRNGWPQDVANVVGFLV  251 (270)
T ss_dssp             ------TCSCBCHHHHHHHHHHHT
T ss_pred             ------CCCCCCHHHHHHHHHHHc
Confidence                  223568999999999886

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.91  E-value=4.5e-23  Score=163.92  Aligned_cols=161  Identities=17%  Similarity=0.137  Sum_probs=126.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC-CcchhhhccCCCceeEeecccCcc-c------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEP-L------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~dl~~~-~------------~   95 (259)
                      +++|+++||||+|+||++++++|+++|++.|++++|+... ..+.+.......++.++.+|+++. +            +
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            5689999999999999999999999999647777776431 112222222234688999999987 4            3


Q ss_pred             CCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh----C---C-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV----G---A-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~---~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      .++|++||+||...    ..+++..+++|+.++.++++++.+.    +   . +||++||...+.               
T Consensus        83 g~id~lv~~Ag~~~----~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------  143 (254)
T 1sby_A           83 KTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN---------------  143 (254)
T ss_dssp             SCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------------
T ss_pred             CCCCEEEECCccCC----HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc---------------
Confidence            58999999999743    4568889999999999999988642    1   3 799999987664               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                       +..+...|+.+|.+.+.+.+.++.+   .++++++++||.+.++.
T Consensus       144 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~  188 (254)
T 1sby_A          144 -AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPL  188 (254)
T ss_dssp             -CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHH
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCcc
Confidence             3334568999999999999998775   68999999999998864

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.91  E-value=2.5e-23  Score=167.80  Aligned_cols=210  Identities=17%  Similarity=0.086  Sum_probs=146.3

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------   94 (259)
                      ..+++++++||||+|+||+++++.|+++|++ |++++|+.....+..++... ..++.++.+|+++.+            
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGVT-VGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLK  102 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3456789999999999999999999999998 99998865433222222211 247889999999987            


Q ss_pred             cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +.++|++||+||....     +....+++..+++|+.++..+++++    ++.+. +||++||...+...          
T Consensus       103 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~----------  172 (283)
T 3v8b_A          103 FGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF----------  172 (283)
T ss_dssp             HSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC----------
T ss_pred             hCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC----------
Confidence            4589999999997532     1223456788999999999999887    55565 99999997644310          


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          +..+...|+.+|.+.+.+.+.++.+   +++++..++||.+..+.........  .    .....+..........
T Consensus       173 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~--~----~~~~~~~~~~~~~~p~  242 (283)
T 3v8b_A          173 ----TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRH--E----EETAIPVEWPKGQVPI  242 (283)
T ss_dssp             ----CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCC--H----HHHSCCCBCTTCSCGG
T ss_pred             ----CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCccccccccc--c----hhhhhhhhhhhhcCcc
Confidence                2234568999999999999999887   4799999999999887643211000  0    0000001111111111


Q ss_pred             --eeeeeHHHHHHHHHhhh
Q 025022          242 --RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 --~~~i~v~D~a~~~~~~l  258 (259)
                        ..+..++|+|+++++++
T Consensus       243 ~~~r~~~pedvA~~v~fL~  261 (283)
T 3v8b_A          243 TDGQPGRSEDVAELIRFLV  261 (283)
T ss_dssp             GTTCCBCHHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHc
Confidence              34678999999999876

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.90  E-value=4e-23  Score=163.96  Aligned_cols=198  Identities=9%  Similarity=-0.023  Sum_probs=135.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc-----------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL-----------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~-----------~~~   97 (259)
                      +++++++||||+|+||+++++.|+++|++ |++++|+.....+..++.. ...++.++.+|+++.+           ..+
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~   83 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFT-VFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAP   83 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence            56789999999999999999999999998 9999986554433222221 1357889999999987           147


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ...++++..+++|+.++..+++++    ++.+. +||++||...+.                
T Consensus        84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------  147 (252)
T 3h7a_A           84 LEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLR----------------  147 (252)
T ss_dssp             EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTC----------------
T ss_pred             ceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcC----------------
Confidence            99999999976532    223456788999999999988876    44555 999999987553                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh---CCcE-EEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEI-RIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~-~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      +......|+.+|.+.+.+.+.++.+.   ++++ .++.||.+..+....    .......         ......... +
T Consensus       148 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~----~~~~~~~---------~~~~~~~~~-~  213 (252)
T 3h7a_A          148 GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRE----RREQMFG---------KDALANPDL-L  213 (252)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------------
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhc----cchhhhh---------hhhhcCCcc-C
Confidence            33445789999999999999998764   7899 899999887764221    1111110         011111223 7


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      +.++|+|+++++++
T Consensus       214 ~~pedvA~~~~~l~  227 (252)
T 3h7a_A          214 MPPAAVAGAYWQLY  227 (252)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            89999999999875

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.90  E-value=2.4e-23  Score=163.59  Aligned_cols=188  Identities=13%  Similarity=0.023  Sum_probs=138.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      |++++++||||+|+||++++++|+++|++ |++++|+.....+..+.. . .++.++.+|+++.+            +.+
T Consensus         1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   77 (235)
T 3l6e_A            1 MSLGHIIVTGAGSGLGRALTIGLVERGHQ-VSMMGRRYQRLQQQELLL-G-NAVIGIVADLAHHEDVDVAFAAAVEWGGL   77 (235)
T ss_dssp             --CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH-G-GGEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh-c-CCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            56789999999999999999999999998 999998654332222222 2 26889999999977            458


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      +|++||+||.....    ...++++..+++|+.++..+++++.+.    +.+||++||...+.                +
T Consensus        78 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~  141 (235)
T 3l6e_A           78 PELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV----------------G  141 (235)
T ss_dssp             CSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS----------------S
T ss_pred             CcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC----------------C
Confidence            99999999975431    233557789999999999999888542    22999999987554                3


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      ......|+.+|.+.+.+.+.++.+.   ++++..++||.+..+.....        .     ..         ....++.
T Consensus       142 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--------~-----~~---------~~~~~~~  199 (235)
T 3l6e_A          142 KANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNT--------D-----HV---------DPSGFMT  199 (235)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC---------------------------------CBC
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhcc--------C-----CC---------CCcCCCC
Confidence            3344689999999999999998764   79999999999987642110        0     00         0124679


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|+|+++++++
T Consensus       200 pedvA~~v~~l~  211 (235)
T 3l6e_A          200 PEDAAAYMLDAL  211 (235)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999999876

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.90  E-value=8.6e-23  Score=162.07  Aligned_cols=191  Identities=16%  Similarity=0.147  Sum_probs=138.0

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~   95 (259)
                      ..+++|+++||||+|+||+++++.|+++|++ |+++.|+.....          .+.++.+|+++.+            +
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~----------~~~~~~~Dl~d~~~v~~~~~~~~~~~   85 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDK-VAITYRSGEPPE----------GFLAVKCDITDTEQVEQAYKEIEETH   85 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCT----------TSEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHhhc----------cceEEEecCCCHHHHHHHHHHHHHHc
Confidence            3456789999999999999999999999998 888888643221          3678899999876            4


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ...++++..+++|+.++.++++++.+    .+. +||++||...+.              
T Consensus        86 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~--------------  151 (253)
T 2nm0_A           86 GPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLL--------------  151 (253)
T ss_dssp             CSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCC--------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC--------------
Confidence            5789999999975431    23456788999999999999887643    455 999999976543              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+.+.++.+.   ++++++++||.+..+....    .............+         ...
T Consensus       152 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~p---------~~~  216 (253)
T 2nm0_A          152 --GSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV----LTDEQRANIVSQVP---------LGR  216 (253)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC-------------CHHHHHTTCT---------TCS
T ss_pred             --CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh----cCHHHHHHHHhcCC---------CCC
Confidence              22234579999999999999988764   7999999999988764211    10111111111111         124


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +++.+|+|+++++++
T Consensus       217 ~~~p~dvA~~i~~l~  231 (253)
T 2nm0_A          217 YARPEEIAATVRFLA  231 (253)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHh
Confidence            779999999998875

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.90  E-value=5.4e-23  Score=164.84  Aligned_cols=200  Identities=18%  Similarity=0.083  Sum_probs=145.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------   94 (259)
                      .+++|+++||||+|+||+++++.|+++|+. |+++.++.....+.+...+  ...++.++.+|+++.+            
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA  106 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999998 8887654322222222211  1357889999999987            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh--CC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      +.++|++||+||.....    ...++++..+++|+.++..+++++.+.  .. +||++||......              
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~--------------  172 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV--------------  172 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC--------------
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC--------------
Confidence            45899999999976432    233456788999999999999998765  23 9999998643221              


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+.+.++.+.   +++++.++||.+.++...... ...    .......+.         ..+
T Consensus       173 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~-~~~----~~~~~~~~~---------~r~  237 (271)
T 3v2g_A          173 -PWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADG-DHA----EAQRERIAT---------GSY  237 (271)
T ss_dssp             -CSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSC-SSH----HHHHHTCTT---------SSC
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccc-hhH----HHHHhcCCC---------CCC
Confidence             33455789999999999999998764   899999999999987643211 111    112222221         235


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ..++|+|+++++++
T Consensus       238 ~~pedvA~~v~fL~  251 (271)
T 3v2g_A          238 GEPQDIAGLVAWLA  251 (271)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            68899999998876

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.90  E-value=8.1e-23  Score=160.99  Aligned_cols=192  Identities=13%  Similarity=0.079  Sum_probs=141.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----------cCCcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------LIEVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----------~~~~d~  100 (259)
                      +|+++||||+|+||++++++|+++|++ |++++|+...    ..+.+   ++..+.+|+++.+           +.++|+
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~-V~~~~r~~~~----~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~g~id~   73 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYR-VAIASRNPEE----AAQSL---GAVPLPTDLEKDDPKGLVKRALEALGGLHV   73 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCHH----HHHHH---TCEEEECCTTTSCHHHHHHHHHHHHTSCCE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHH----HHHhh---CcEEEecCCchHHHHHHHHHHHHHcCCCCE
Confidence            579999999999999999999999998 9999886433    22222   3778899999832           358999


Q ss_pred             EEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          101 IYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       101 vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      +||+||.....    ...++++..+++|+.++..+++++.    +.+. +||++||...+...              ...
T Consensus        74 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------~~~  139 (239)
T 2ekp_A           74 LVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAG--------------GPV  139 (239)
T ss_dssp             EEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------TTS
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCC--------------CCC
Confidence            99999965431    1234567889999999999988773    4566 99999998766521              113


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVV--SNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      +...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++....    ..  +.+........+         ...+.+
T Consensus       140 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~~p---------~~~~~~  206 (239)
T 2ekp_A          140 PIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLP----LRQNPELYEPITARIP---------MGRWAR  206 (239)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHH----HHTCHHHHHHHHTTCT---------TSSCBC
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhc----cccCHHHHHHHHhcCC---------CCCCcC
Confidence            45689999999999999988764   8999999999998875210    10  122222222211         123679


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|+|+++++++
T Consensus       207 ~~dvA~~~~~l~  218 (239)
T 2ekp_A          207 PEEIARVAAVLC  218 (239)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            999999998875

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.90  E-value=2.4e-23  Score=167.82  Aligned_cols=205  Identities=17%  Similarity=0.049  Sum_probs=145.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CC---ceeEeecccCccc----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HP---RFELIRHDVTEPL----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~dl~~~~----------   94 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+.... ..   ++.++.+|+++.+          
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   81 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGAN-VTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL   81 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHH
Confidence            367899999999999999999999999998 99998864332222222111 12   6889999999977          


Q ss_pred             --cCCcCEEEEccCCCCcc--------ccccChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEecceeecCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~~~~~~~~~~~~  160 (259)
                        +.++|++||+||.....        ...++++..+++|+.++.++++++.+.    +.+||++||...+..       
T Consensus        82 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~-------  154 (280)
T 1xkq_A           82 KQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQ-------  154 (280)
T ss_dssp             HHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSS-------
T ss_pred             HhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCC-------
Confidence              35899999999965431        123446788999999999999887642    359999999876542       


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-ccH----HHHHHHHHHcCCCe
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDD-GRV----VSNFIAQAIRGEPL  232 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~-~~~----~~~~~~~~~~~~~~  232 (259)
                              ...+...|+.+|.+.+.+.+.++.+   +++++++++||++.++...... ...    ...+........+ 
T Consensus       155 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p-  225 (280)
T 1xkq_A          155 --------AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIP-  225 (280)
T ss_dssp             --------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCT-
T ss_pred             --------CCCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcCCC-
Confidence                    1134568999999999999998865   4899999999999987521100 000    0111111111111 


Q ss_pred             EEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          233 TVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       233 ~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                              ...+.+++|+|+++++++
T Consensus       226 --------~~~~~~pedvA~~v~~l~  243 (280)
T 1xkq_A          226 --------IGAAGKPEHIANIILFLA  243 (280)
T ss_dssp             --------TSSCBCHHHHHHHHHHHH
T ss_pred             --------CCCCCCHHHHHHHHHHhc
Confidence                    224789999999998875

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.90  E-value=1e-22  Score=161.42  Aligned_cols=193  Identities=17%  Similarity=0.141  Sum_probs=138.6

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcC
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVD   99 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d   99 (259)
                      ...+++|+++||||+|+||+++++.|+++|++ |++++|+.    +..+..   ..+.++ +|+ ..+       ..++|
T Consensus        14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~----~~~~~~---~~~~~~-~D~-~~~~~~~~~~~~~iD   83 (249)
T 1o5i_A           14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNE----ELLKRS---GHRYVV-CDL-RKDLDLLFEKVKEVD   83 (249)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCH----HHHHHT---CSEEEE-CCT-TTCHHHHHHHSCCCS
T ss_pred             HhccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCH----HHHHhh---CCeEEE-eeH-HHHHHHHHHHhcCCC
Confidence            34467899999999999999999999999998 99998854    222222   256667 998 322       34899


Q ss_pred             EEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHH----HHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       100 ~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ++||+||......    ...+++..+++|+.++..++++    +++.+. +||++||...+.                +.
T Consensus        84 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~  147 (249)
T 1o5i_A           84 ILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS----------------PI  147 (249)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------CC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcC----------------CC
Confidence            9999999654321    2344677889999998776554    455666 999999988765                33


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHH-HHHcCCCeEEecCCceeeeeee
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIA-QAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      .+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++....    ....... ......+         ...+++
T Consensus       148 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----~~~~~~~~~~~~~~p---------~~~~~~  214 (249)
T 1o5i_A          148 ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE----LLSEEKKKQVESQIP---------MRRMAK  214 (249)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH----HSCHHHHHHHHTTST---------TSSCBC
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccc----cchhhHHHHHHhcCC---------CCCCcC
Confidence            44578999999999999998876   58999999999999975210    0011111 2222211         124779


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|+|+++++++
T Consensus       215 ~~dvA~~i~~l~  226 (249)
T 1o5i_A          215 PEEIASVVAFLC  226 (249)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999998875

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.9e-23  Score=168.77  Aligned_cols=166  Identities=13%  Similarity=0.087  Sum_probs=129.8

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCC---CeEEEEcCCCCCCcchhhh---ccCCCceeEeecccCccc-------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEK---NEVIVVDNYFTGSKDNLRK---WIGHPRFELIRHDVTEPL-------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~---~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~dl~~~~-------   94 (259)
                      ..+++|+++||||+|+||+++++.|+++|+   . |++..|+.....+..+.   .....++.++.+|+++.+       
T Consensus        29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~  107 (287)
T 3rku_A           29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMK-LILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIE  107 (287)
T ss_dssp             HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHH
T ss_pred             hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCce-EEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHH
Confidence            446789999999999999999999999987   6 88888864432222221   112357889999999987       


Q ss_pred             -----cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCC
Q 025022           95 -----LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQ  159 (259)
Q Consensus        95 -----~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~  159 (259)
                           +.++|++||+||....     +...++++..+++|+.++.++++++    ++.+. +||++||...+.       
T Consensus       108 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~-------  180 (287)
T 3rku_A          108 NLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRD-------  180 (287)
T ss_dssp             TSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS-------
T ss_pred             HHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcC-------
Confidence                 3579999999996542     1233457789999999999999887    44555 999999987553       


Q ss_pred             CCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          160 DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       160 ~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                               +......|+.+|.+.+.+.+.++.+   .+++++.++||.+..+.
T Consensus       181 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~  225 (287)
T 3rku_A          181 ---------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEF  225 (287)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSH
T ss_pred             ---------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCcc
Confidence                     3344578999999999999999887   48999999999998763

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.90  E-value=1.6e-23  Score=168.13  Aligned_cols=201  Identities=10%  Similarity=0.002  Sum_probs=145.1

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~-----------   94 (259)
                      ..+++++++||||+|+||++++++|+++|++ |+++.|+.....+.+...+.  ..++.++.+|+++.+           
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~  103 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLK-VWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQ  103 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999999998 88888854333222222211  347889999999977           


Q ss_pred             -cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 -LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       ..++|++||+||......    ..++++..+++|+.++.++++++.    +.+. +||++||...+.            
T Consensus       104 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------  171 (271)
T 4iin_A          104 SDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER------------  171 (271)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH------------
T ss_pred             hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC------------
Confidence             358999999999765421    234567889999999998887764    3455 999999987654            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          +..+...|+.+|.+.+.+.+.++.+   .++++..++||.+..+....    ........         +......
T Consensus       172 ----~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~~~~---------~~~~~~~  234 (271)
T 4iin_A          172 ----GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNAN----LKDELKAD---------YVKNIPL  234 (271)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-------------------------CGGGCTT
T ss_pred             ----CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhh----hcHHHHHH---------HHhcCCc
Confidence                3345578999999999999999877   58999999999998865221    11111111         1111223


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+.+++|+|+++++++
T Consensus       235 ~~~~~p~dvA~~i~~l~  251 (271)
T 4iin_A          235 NRLGSAKEVAEAVAFLL  251 (271)
T ss_dssp             CSCBCHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHh
Confidence            45779999999998875

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.90  E-value=3.2e-23  Score=168.04  Aligned_cols=203  Identities=12%  Similarity=-0.024  Sum_probs=145.0

Q ss_pred             ccccCCCEEEEEcCchh--hhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc---------
Q 025022           27 KFFQSNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~--iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~---------   94 (259)
                      +..+++|+++||||+|+  ||+++++.|+++|++ |++++|+... .+..+... ...++.++.+|+++.+         
T Consensus        26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~-V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  103 (293)
T 3grk_A           26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAE-LAFTYQGDAL-KKRVEPLAEELGAFVAGHCDVADAASIDAVFETL  103 (293)
T ss_dssp             -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCE-EEEEECSHHH-HHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEEcCCHHH-HHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHH
Confidence            34567899999999988  999999999999998 8888886321 11111111 1136889999999987         


Q ss_pred             ---cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHhC--C-eEEEEecceeecCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                         +.++|++||+||....        ....++++..+++|+.++..+++++.+.-  . +||++||...+.        
T Consensus       104 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~--------  175 (293)
T 3grk_A          104 EKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK--------  175 (293)
T ss_dssp             HHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS--------
T ss_pred             HHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc--------
Confidence               4689999999997641        22334567899999999999999987642  3 999999987654        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (259)
                              +......|+.+|.+.+.+.+.++.+   ++++++.++||.+.++......  .............++     
T Consensus       176 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~p~-----  240 (293)
T 3grk_A          176 --------VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIG--DFRYILKWNEYNAPL-----  240 (293)
T ss_dssp             --------BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------C--CHHHHHHHHHHHSTT-----
T ss_pred             --------CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhccc--chHHHHHHHHhcCCC-----
Confidence                    3334568999999999999999876   4799999999999987532211  112222222222221     


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ..+..++|+|+++++++
T Consensus       241 ----~r~~~pedvA~~v~~L~  257 (293)
T 3grk_A          241 ----RRTVTIDEVGDVGLYFL  257 (293)
T ss_dssp             ----SSCCCHHHHHHHHHHHH
T ss_pred             ----CCCCCHHHHHHHHHHHc
Confidence                23567899999998876

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.90  E-value=4.9e-23  Score=164.89  Aligned_cols=198  Identities=15%  Similarity=0.062  Sum_probs=144.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc-CCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++++||||+|+||++++++|+++|++ |+++. |+.....+..+... ...++.++.+|+++.+            +
T Consensus        24 l~~k~vlVTGas~gIG~~la~~l~~~G~~-v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (267)
T 4iiu_A           24 AMSRSVLVTGASKGIGRAIARQLAADGFN-IGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH  102 (267)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            56789999999999999999999999999 75554 43222222222211 1357899999999977            3


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH-----HhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      .++|++||+||.....    ...++++..+++|+.++.++++++.     +.+. +||++||...+.             
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-------------  169 (267)
T 4iiu_A          103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVM-------------  169 (267)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHH-------------
T ss_pred             CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhcc-------------
Confidence            5899999999976532    2334567889999999999998763     3444 999999987654             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   ++++.+++||.+.++.....     ...........+.         .
T Consensus       170 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-----~~~~~~~~~~~p~---------~  232 (267)
T 4iiu_A          170 ---GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME-----ESALKEAMSMIPM---------K  232 (267)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC-----HHHHHHHHHTCTT---------C
T ss_pred             ---CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc-----HHHHHHHHhcCCC---------C
Confidence               33445789999999999999888764   79999999999998764321     2333333333322         2


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+.+++|+|+++++++
T Consensus       233 ~~~~~edva~~~~~L~  248 (267)
T 4iiu_A          233 RMGQAEEVAGLASYLM  248 (267)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            3668999999998875

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.90  E-value=1.3e-22  Score=160.42  Aligned_cols=194  Identities=16%  Similarity=0.116  Sum_probs=141.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+. .   ++.++.+|+++.+            +.+
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~-~---~~~~~~~D~~~~~~~~~~~~~~~~~~g~   77 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEEGPLREAAEA-V---GAHPVVMDVADPASVERGFAEALAHLGR   77 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHT-T---TCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHH-c---CCEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            56789999999999999999999999998 99988854322211111 1   3788999999877            357


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ...++++..+++|+.++.++++++.+.    +. +||++||.. +.                
T Consensus        78 id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~----------------  140 (245)
T 1uls_A           78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YL----------------  140 (245)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GG----------------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hc----------------
Confidence            99999999975432    123446778999999999998887653    45 999999987 32                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +......|+.+|.+.+.+.+.++.+   +++++++++||.+..+......    ...........+.         ..++
T Consensus       141 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~----~~~~~~~~~~~p~---------~~~~  207 (245)
T 1uls_A          141 GNLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVP----EKVREKAIAATPL---------GRAG  207 (245)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSC----HHHHHHHHHTCTT---------CSCB
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcC----HHHHHHHHhhCCC---------CCCc
Confidence            2223467999999999999998766   4899999999999887532111    1122222222211         1267


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      +++|+|+++++++
T Consensus       208 ~~~dvA~~v~~l~  220 (245)
T 1uls_A          208 KPLEVAYAALFLL  220 (245)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            8999999998875

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=7.9e-24  Score=167.82  Aligned_cols=191  Identities=15%  Similarity=0.048  Sum_probs=139.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---c-CCCceeEeecccCccc-----------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---I-GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~~~dl~~~~-----------   94 (259)
                      +++++++||||+|+||.++++.|+++|++ |++++|+.....+..++.   . ...++.++.+|+++.+           
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGYR-VVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTCE-EEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            56789999999999999999999999998 999988654332222211   1 1157889999999977           


Q ss_pred             -cCCcCEEEEccCCCCccc---cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 -LIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                       +.++|++||+||......   ..++++..+++|+.++..+++++    ++.+. +||++||...+.             
T Consensus        84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------  150 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKY-------------  150 (250)
T ss_dssp             HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred             hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcC-------------
Confidence             458999999999754321   22446788999999999998887    34555 999999986543             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   ++++..++||.+..+.            .....  ...       ...
T Consensus       151 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~------------~~~~~--~~~-------~~~  206 (250)
T 3nyw_A          151 ---GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM------------AKKAG--TPF-------KDE  206 (250)
T ss_dssp             -----CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH------------HHHTT--CCS-------CGG
T ss_pred             ---CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCch------------hhhcC--CCc-------ccc
Confidence               22335789999999999999988764   8999999999887642            11111  111       123


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++++|+|+++++++
T Consensus       207 ~~~~p~dva~~v~~l~  222 (250)
T 3nyw_A          207 EMIQPDDLLNTIRCLL  222 (250)
T ss_dssp             GSBCHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHH
Confidence            4789999999999876

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.90  E-value=1.9e-23  Score=166.24  Aligned_cols=200  Identities=16%  Similarity=0.114  Sum_probs=143.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc-chhhhcc-CCCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWI-GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~dl~~~~------------   94 (259)
                      ..++++|+||||+|+||++++++|+++|++ |++..++..... ....... ...++.++.+|+++.+            
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFR-VVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEE-EEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            356789999999999999999999999998 777774333322 2222111 1347889999999977            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      +.++|++||+||.....    ....+++..+++|+.++.++++++    ++.+. +||++||...+.             
T Consensus        89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------  155 (256)
T 3ezl_A           89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK-------------  155 (256)
T ss_dssp             TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG-------------
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc-------------
Confidence            45899999999976532    223456789999999988887765    45565 999999987654             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+.+.++.+   .++++.+++||.+.++....    ..+..........+.         .
T Consensus       156 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~~~---------~  219 (256)
T 3ezl_A          156 ---GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA----IRPDVLEKIVATIPV---------R  219 (256)
T ss_dssp             ---SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----SCHHHHHHHHHHSTT---------S
T ss_pred             ---CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccc----cCHHHHHHHHhcCCC---------C
Confidence               3345578999999999999998876   47999999999998764321    112233333322221         2


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+.+++|+|+++++++
T Consensus       220 ~~~~~~dva~~~~~l~  235 (256)
T 3ezl_A          220 RLGSPDEIGSIVAWLA  235 (256)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            3568999999998875

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=2.8e-23  Score=165.50  Aligned_cols=203  Identities=15%  Similarity=0.030  Sum_probs=140.1

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcch-hhhccC-CCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWIG-HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-~~~~~~-~~~~~~~~~dl~~~~-----------   94 (259)
                      ..+++++++||||+|+||+++++.|+++|++ |+++.++.....+. .+.... ..++.++.+|+++.+           
T Consensus         4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3467899999999999999999999999998 87774433222221 221111 246889999999987           


Q ss_pred             -cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 -LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                       +.++|++||+||....     ....++++..+++|+.++.++++++.+.-   .+||++||...+..            
T Consensus        83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------  150 (259)
T 3edm_A           83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDG------------  150 (259)
T ss_dssp             HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHC------------
T ss_pred             HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccC------------
Confidence             4589999999986522     11233457889999999999999997653   28999999876621            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                         +..+...|+.+|.+.+.+.+.++.+.+  +++..+.||.+..+......   -......         .........
T Consensus       151 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~---~~~~~~~---------~~~~~p~~r  215 (259)
T 3edm_A          151 ---GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFT---KPEVRER---------VAGATSLKR  215 (259)
T ss_dssp             ---CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC----------------------------------C
T ss_pred             ---CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCccccccc---ChHHHHH---------HHhcCCCCC
Confidence               334456799999999999999988754  89999999999886522110   0111111         111223345


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +.+++|+|+++++++
T Consensus       216 ~~~pedva~~v~~L~  230 (259)
T 3edm_A          216 EGSSEDVAGLVAFLA  230 (259)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHc
Confidence            779999999999875

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.90  E-value=1.1e-23  Score=169.07  Aligned_cols=167  Identities=12%  Similarity=0.005  Sum_probs=127.5

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc-----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~-----------   94 (259)
                      ...+++++++||||+|+||+++++.|+++|++ |++++|+.....+..++.. ...++.++.+|+++.+           
T Consensus        26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~  104 (272)
T 1yb1_A           26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA  104 (272)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence            34477899999999999999999999999998 9999886433222111111 1247889999999876           


Q ss_pred             -cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 -LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       +.++|+|||+||......    ...+.+..+++|+.++.++++++.    +.+. +||++||...+.            
T Consensus       105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------------  172 (272)
T 1yb1_A          105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV------------  172 (272)
T ss_dssp             HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC------------
T ss_pred             HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC------------
Confidence             358999999999764321    223456789999999888777664    4555 999999987664            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh------CCcEEEEEeccccCCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH------GIEIRIARIFNTYGPR  210 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------~~~~~~lr~~~v~g~~  210 (259)
                          +..+...|+.+|.+.+.+++.++.+.      ++++++++|+++.++.
T Consensus       173 ----~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~  220 (272)
T 1yb1_A          173 ----SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGF  220 (272)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCS
T ss_pred             ----CCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Confidence                22334679999999999999988764      7999999999998875

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.90  E-value=1.8e-23  Score=166.11  Aligned_cols=197  Identities=17%  Similarity=0.137  Sum_probs=123.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||++++++|+++|++ |++++|+........++.. ...++.++.+|+++.+            +.
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFG   85 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            56899999999999999999999999998 9999886443322222211 1357889999999987            35


Q ss_pred             CcCEEEEccCCCCc-------cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           97 EVDQIYHLACPASP-------IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      ++|++||+||....       ....++++..+++|+.++..+++++    ++.+. +||++||...+.            
T Consensus        86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------  153 (253)
T 3qiv_A           86 GIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL------------  153 (253)
T ss_dssp             CCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----------------
T ss_pred             CCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC------------
Confidence            89999999997421       1123446788999999977766655    44555 999999987652            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                             +...|+.+|.+.+.+.+.++.+.   ++++++++||.++++.....   ....+...+..+.         ..
T Consensus       154 -------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~~---------~~  214 (253)
T 3qiv_A          154 -------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTT---TPKEMVDDIVKGL---------PL  214 (253)
T ss_dssp             -------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC--------------------------------------
T ss_pred             -------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhc---CcHHHHHHHhccC---------CC
Confidence                   12459999999999999998875   79999999999998753211   1111222222222         22


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+..++|+|+++++++
T Consensus       215 ~~~~~~~dva~~~~~l~  231 (253)
T 3qiv_A          215 SRMGTPDDLVGMCLFLL  231 (253)
T ss_dssp             -----CCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHc
Confidence            34567899999998875

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.90  E-value=6.3e-23  Score=162.38  Aligned_cols=190  Identities=17%  Similarity=0.129  Sum_probs=136.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++++++||||+|+||++++++|+++|++ |+++.|+.....          .+..+.+|+++.+            +.
T Consensus        12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~----------~~~~~~~D~~~~~~~~~~~~~~~~~~g   80 (247)
T 1uzm_A           12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAPK----------GLFGVEVDVTDSDAVDRAFTAVEEHQG   80 (247)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCT----------TSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHH----------HhcCeeccCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999998 999888643322          1123789999876            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....    ...++++..+++|+.++.++++++.+    .+. +||++||...+.               
T Consensus        81 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~---------------  145 (247)
T 1uzm_A           81 PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW---------------  145 (247)
T ss_dssp             SCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhcc---------------
Confidence            799999999975431    23345778999999999999887753    455 999999986543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +..+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++....    .............+         ...+
T Consensus       146 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~p---------~~~~  211 (247)
T 1uzm_A          146 -GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA----LDERIQQGALQFIP---------AKRV  211 (247)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH----SCHHHHHHHGGGCT---------TCSC
T ss_pred             -CCCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhh----cCHHHHHHHHhcCC---------CCCC
Confidence             2233467999999999999998876   48999999999997753110    00111111111111         1247


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ++++|+|+++++++
T Consensus       212 ~~~~dvA~~~~~l~  225 (247)
T 1uzm_A          212 GTPAEVAGVVSFLA  225 (247)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHc
Confidence            89999999998875

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.90  E-value=1.6e-22  Score=161.84  Aligned_cols=169  Identities=14%  Similarity=0.039  Sum_probs=127.7

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcC---CCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc--------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENE---KNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL--------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g---~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~--------   94 (259)
                      ...+++++++||||+|+||++++++|+++|   ++ |+++.|+..... .+.+.. ...++.++.+|+++.+        
T Consensus        16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~-V~~~~r~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~   93 (267)
T 1sny_A           16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQH-LFTTCRNREQAK-ELEDLAKNHSNIHILEIDLRNFDAYDKLVAD   93 (267)
T ss_dssp             ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSE-EEEEESCTTSCH-HHHHHHHHCTTEEEEECCTTCGGGHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcE-EEEEecChhhhH-HHHHhhccCCceEEEEecCCChHHHHHHHHH
Confidence            444678999999999999999999999999   77 999998765433 222211 1347899999999987        


Q ss_pred             ----cC--CcCEEEEccCCCC-c----cccccChhHHHHHhhhhHHHHHHHHHHh----------------CCeEEEEec
Q 025022           95 ----LI--EVDQIYHLACPAS-P----IFYKYNPVKTIKTNVIGTLNMLGLAKRV----------------GARILLTST  147 (259)
Q Consensus        95 ----~~--~~d~vi~~a~~~~-~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----------------~~~~i~~Ss  147 (259)
                          +.  ++|+|||+||... .    .....+.+..+++|+.++.++++++.+.                +.+||++||
T Consensus        94 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS  173 (267)
T 1sny_A           94 IEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSS  173 (267)
T ss_dssp             HHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECC
T ss_pred             HHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEec
Confidence                12  7999999999765 1    1223456778999999999999887543                238999999


Q ss_pred             ceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          148 SEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       148 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      ...+....             +..+...|+.+|.+.+.+++.++.+   +++++++++||++..+.
T Consensus       174 ~~~~~~~~-------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~  226 (267)
T 1sny_A          174 ILGSIQGN-------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDM  226 (267)
T ss_dssp             GGGCSTTC-------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTT
T ss_pred             ccccccCC-------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCC
Confidence            87664311             1234567999999999999998876   58999999999997764

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.90  E-value=1.4e-22  Score=160.44  Aligned_cols=200  Identities=13%  Similarity=0.049  Sum_probs=142.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+++. ...++.++.+|+++.+            +.
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGAA-VAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            66899999999999999999999999998 9998886433222111111 1246888999999977            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      ++|++||+||.....    ....+++..+++|+.++.++++++.+    .+.+||++||...+.                
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------  147 (247)
T 2jah_A           84 GLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRV----------------  147 (247)
T ss_dssp             CCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTC----------------
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcC----------------
Confidence            899999999975432    12344677899999999999988753    235999999986553                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +..+...|+.+|.+.+.+.+.++.+   +++++++++||.+.++.................    +    +    ...++
T Consensus       148 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~----~----~----~~~~~  215 (247)
T 2jah_A          148 NVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQR----I----S----QIRKL  215 (247)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHHH----T----T----TSCCB
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHHHhc----c----c----ccCCC
Confidence            2334467999999999999998765   489999999999988753211111111111110    0    1    01147


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      ..+|+|+++++++
T Consensus       216 ~pedvA~~v~~l~  228 (247)
T 2jah_A          216 QAQDIAEAVRYAV  228 (247)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            8999999998875

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.90  E-value=6.5e-23  Score=164.00  Aligned_cols=207  Identities=14%  Similarity=0.027  Sum_probs=146.8

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~----------   94 (259)
                      .++++++++||||+|+||+++++.|+++|++ |++++|+.....+..+.+   ....++.++.+|+++.+          
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE   82 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999999999998 999988644332222221   22235889999999987          


Q ss_pred             --cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                        +.++|++||+||.....    ...++++..+++|+.++..+++++.+    .+. +||++||...+.           
T Consensus        83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------  151 (265)
T 3lf2_A           83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ-----------  151 (265)
T ss_dssp             HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS-----------
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC-----------
Confidence              46899999999975432    22345678899999999999998854    334 899999987554           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC------CccHHHHHHHHHHcCCCeEE
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNID------DGRVVSNFIAQAIRGEPLTV  234 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~------~~~~~~~~~~~~~~~~~~~~  234 (259)
                           +......|+.+|.+.+.+.+.++.+.   ++++..++||.+.+|.....      .......+..........  
T Consensus       152 -----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  224 (265)
T 3lf2_A          152 -----PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQI--  224 (265)
T ss_dssp             -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTC--
T ss_pred             -----CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCC--
Confidence                 33445789999999999999998764   79999999999987531100      000001111111111101  


Q ss_pred             ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          235 QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       235 ~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                           ....+..++|+|+++++++
T Consensus       225 -----p~~r~~~pedvA~~v~fL~  243 (265)
T 3lf2_A          225 -----PLGRLGKPIEAARAILFLA  243 (265)
T ss_dssp             -----TTCSCBCHHHHHHHHHHHH
T ss_pred             -----CcCCCcCHHHHHHHHHHHh
Confidence                 1124678999999999876

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.90  E-value=4.3e-23  Score=163.21  Aligned_cols=190  Identities=17%  Similarity=0.182  Sum_probs=124.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----------cCCc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------LIEV   98 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----------~~~~   98 (259)
                      +++++++||||+|+||+++++.|++ |+. |++++|+...    ++......++.++.+|+.+..           +.++
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~-g~~-v~~~~r~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i   76 (245)
T 3e9n_A            3 LKKKIAVVTGATGGMGIEIVKDLSR-DHI-VYALGRNPEH----LAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHV   76 (245)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHTT-TSE-EEEEESCHHH----HHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHhC-CCe-EEEEeCCHHH----HHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCC
Confidence            5678999999999999999999987 887 8888885332    222222347888999988763           4579


Q ss_pred             CEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCCeEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus        99 d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      |++||+||......    ..++++..+++|+.++..+++++.    +.+.+||++||...+.                +.
T Consensus        77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------------~~  140 (245)
T 3e9n_A           77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNG----------------PH  140 (245)
T ss_dssp             SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC------------------------
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCccccc----------------CC
Confidence            99999999765422    234467789999999888887764    3345999999987665                33


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      .+...|+.+|.+.+.+.+.++.+   .++++++++||.+.++....        +....  +       .......++++
T Consensus       141 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------~~~~~--~-------~~~~~~~~~~p  203 (245)
T 3e9n_A          141 PGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQG--------LMDSQ--G-------TNFRPEIYIEP  203 (245)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------CCGGGSCH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhh--------hhhhh--h-------cccccccCCCH
Confidence            44578999999999999999876   57999999999998875221        11000  0       00112347899


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|+|+++++++
T Consensus       204 ~dvA~~i~~l~  214 (245)
T 3e9n_A          204 KEIANAIRFVI  214 (245)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999876

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.90  E-value=4.6e-23  Score=161.91  Aligned_cols=183  Identities=14%  Similarity=-0.023  Sum_probs=130.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVD   99 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d   99 (259)
                      +++++||||+|+||++++++|+++|++ |+++.|+.....+ +....  .++.++.+|+++.+            +.++|
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r~~~~~~~-~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGYR-VGLMARDEKRLQA-LAAEL--EGALPLPGDVREEGDWARAVAAMEEAFGELS   80 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH-HHHHS--TTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHH-HHHHh--hhceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999999999998 9999885432222 22212  26788999999876            35899


Q ss_pred             EEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          100 QIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       100 ~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ++||+||.....    ...++++..+++|+.++..+++.+    ++.+. +||++||...+.                +.
T Consensus        81 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----------------~~  144 (234)
T 2ehd_A           81 ALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN----------------PF  144 (234)
T ss_dssp             EEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS----------------CC
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC----------------CC
Confidence            999999965431    123456788999999998666554    45566 999999987554                33


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      .+...|+.+|.+.+.+.+.++.+   .+++++++|||.+..+....        .      ...          ..++++
T Consensus       145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------~------~~~----------~~~~~~  200 (234)
T 2ehd_A          145 KGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN--------T------PGQ----------AWKLKP  200 (234)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC----------------------------------------CCH
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc--------c------ccc----------cCCCCH
Confidence            44568999999999999888765   48999999999887753110        0      000          015689


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|+|+++++++
T Consensus       201 ~dvA~~~~~l~  211 (234)
T 2ehd_A          201 EDVAQAVLFAL  211 (234)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.90  E-value=1.5e-23  Score=167.95  Aligned_cols=163  Identities=13%  Similarity=0.127  Sum_probs=127.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh---ccCCCceeEeecccCccc--------cCCc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK---WIGHPRFELIRHDVTEPL--------LIEV   98 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~dl~~~~--------~~~~   98 (259)
                      +++|+++||||+|+||++++++|+++|++ |++++|+.....+..++   ......+..+.+|+++.+        +.++
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i   86 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGAN-VLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV   86 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence            56789999999999999999999999998 99998865433222222   112346788999999877        5689


Q ss_pred             CEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        99 d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      |++||+||......    ..++++..+++|+.++..+++++.    +.+. +||++||...+.                +
T Consensus        87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~  150 (267)
T 3t4x_A           87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIM----------------P  150 (267)
T ss_dssp             SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTS----------------C
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhcc----------------C
Confidence            99999999765422    223456779999999888877654    3455 999999987654                3


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP  209 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~  209 (259)
                      ..+...|+.+|.+.+.+.+.++.+.   ++++..++||.+.++
T Consensus       151 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~  193 (267)
T 3t4x_A          151 SQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTE  193 (267)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCc
Confidence            4455789999999999999998775   689999999988875

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.90  E-value=7.5e-23  Score=160.29  Aligned_cols=187  Identities=12%  Similarity=0.009  Sum_probs=135.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---------cCCcCEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------LIEVDQIY  102 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---------~~~~d~vi  102 (259)
                      ||+++||||+|+||++++++|+++|++ |++++|+.....+..+..  ..++.++.+|+++.+         ....|++|
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKA-TYLTGRSESKLSTVTNCL--SNNVGYRARDLASHQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHHTC--SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHH--hhccCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence            468999999999999999999999999 999998644333222222  357889999999987         23359999


Q ss_pred             EccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC
Q 025022          103 HLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS  174 (259)
Q Consensus       103 ~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (259)
                      |+||......    ..++++..+++|+.++.++++++.+.    +.+||++||...+.                +..+..
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----------------~~~~~~  141 (230)
T 3guy_A           78 HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ----------------PKAQES  141 (230)
T ss_dssp             ECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS----------------CCTTCH
T ss_pred             EeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC----------------CCCCCc
Confidence            9999654321    23456778999999999999987653    22899999987654                334557


Q ss_pred             chHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV  251 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  251 (259)
                      .|+.+|.+.+.+.+.++.+.   ++++..++||.+..+....            ..  ..       .....+++++|+|
T Consensus       142 ~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~------------~~--~~-------~~~~~~~~~~dvA  200 (230)
T 3guy_A          142 TYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWET------------SG--KS-------LDTSSFMSAEDAA  200 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC-------------------------------------CCCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHh------------cC--CC-------CCcccCCCHHHHH
Confidence            89999999999999998875   7999999999887754211            00  00       1133578999999


Q ss_pred             HHHHhhh
Q 025022          252 CKSCFLA  258 (259)
Q Consensus       252 ~~~~~~l  258 (259)
                      +++++++
T Consensus       201 ~~i~~l~  207 (230)
T 3guy_A          201 LMIHGAL  207 (230)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998875

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.90  E-value=6.6e-23  Score=165.00  Aligned_cols=209  Identities=19%  Similarity=0.108  Sum_probs=146.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC---------Ccchhhhc-----cCCCceeEeecccCccc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG---------SKDNLRKW-----IGHPRFELIRHDVTEPL   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~---------~~~~~~~~-----~~~~~~~~~~~dl~~~~   94 (259)
                      .+++++++||||+|+||+++++.|+++|++ |++++|+...         ..+.++..     ....++.++.+|+++.+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   86 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGAD-IIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD   86 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence            367899999999999999999999999998 8888874211         11111111     11357889999999987


Q ss_pred             ------------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhC-C-eEEEEecceeec
Q 025022           95 ------------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYG  152 (259)
Q Consensus        95 ------------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-~~i~~Ss~~~~~  152 (259)
                                  +.++|++||+||.....    ...++++..+++|+.++.++++++.    +.+ . +||++||...+.
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~  166 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK  166 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence                        46899999999976542    2334567889999999999988753    334 3 999999987654


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcC
Q 025022          153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRG  229 (259)
Q Consensus       153 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~  229 (259)
                                      +......|+.+|.+.+.+.+.++.+.   ++++..++||.+.++....   .............
T Consensus       167 ----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~---~~~~~~~~~~~~~  227 (277)
T 3tsc_A          167 ----------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSG---DMVTAVGQAMETN  227 (277)
T ss_dssp             ----------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSH---HHHHHHHHHHHTC
T ss_pred             ----------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccc---hhhhhhhhccccc
Confidence                            33445679999999999999998774   7999999999998875221   1111111111111


Q ss_pred             CC-eEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          230 EP-LTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       230 ~~-~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .. .......... .+.+++|+|+++++++
T Consensus       228 ~~~~~~~~~~~p~-r~~~pedvA~~v~~L~  256 (277)
T 3tsc_A          228 PQLSHVLTPFLPD-WVAEPEDIADTVCWLA  256 (277)
T ss_dssp             GGGTTTTCCSSSC-SCBCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccCC-CCCCHHHHHHHHHHHh
Confidence            10 0001111112 4789999999999886

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=6.4e-23  Score=163.02  Aligned_cols=199  Identities=17%  Similarity=0.074  Sum_probs=141.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +|+++||||+|+||++++++|+++|  +. |++..|+.....+..+. . ..++.++.+|+++.+            +.+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~-v~~~~r~~~~~~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   78 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTV-VYGVARSEAPLKKLKEK-Y-GDRFFYVVGDITEDSVLKQLVNAAVKGHGK   78 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCE-EEEEESCHHHHHHHHHH-H-GGGEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeE-EEEecCCHHHHHHHHHH-h-CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            5899999999999999999999996  44 87787754332222222 1 247889999999987            458


Q ss_pred             cCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHH----HHhCCeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||....     ....++++..+++|+.++..+++++    ++.+.+||++||...+.                
T Consensus        79 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~----------------  142 (254)
T 3kzv_A           79 IDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNM----------------  142 (254)
T ss_dssp             CCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCC----------------
T ss_pred             ccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhcc----------------
Confidence            9999999997532     1223456789999999999999887    44456999999987654                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCCCCcc-----HHHHHHHHHHcCCCeEEecCCceee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRIARIFNTYGPRMNIDDGR-----VVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~lr~~~v~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                      +..+...|+.+|.+.+.+.+.++.+. ++++..++||.+.++........     .............+         ..
T Consensus       143 ~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  213 (254)
T 3kzv_A          143 YFSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKE---------NN  213 (254)
T ss_dssp             SSCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHT---------TC
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHh---------cC
Confidence            33455789999999999999998775 89999999999998764321110     01122222221111         12


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+.+++|+|+++++++
T Consensus       214 r~~~p~dva~~v~~L~  229 (254)
T 3kzv_A          214 QLLDSSVPATVYAKLA  229 (254)
T ss_dssp             ----CHHHHHHHHHHH
T ss_pred             CcCCcccHHHHHHHHH
Confidence            3568899999998875

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.90  E-value=6.7e-23  Score=164.41  Aligned_cols=202  Identities=13%  Similarity=0.018  Sum_probs=145.5

Q ss_pred             cccCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc----------
Q 025022           28 FFQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~----------   94 (259)
                      ...++|+|+||||+  |+||++++++|+++|++ |++++|+.. ..+.+++.. ....+.++.+|+++.+          
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~-V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAE-LAFTYVGDR-FKDRITEFAAEFGSELVFPCDVADDAQIDALFASLK   87 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCC-EEEEecchh-hHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHH
Confidence            34678999999999  99999999999999998 988888632 222222221 1235889999999987          


Q ss_pred             --cCCcCEEEEccCCCCcc---------ccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~  160 (259)
                        +.++|++||+||.....         ....+++..+++|+.++..+++++.+.   +.+||++||...+.        
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------  159 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER--------  159 (271)
T ss_dssp             HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS--------
T ss_pred             HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc--------
Confidence              46899999999976431         233456788999999999999998765   22899999987554        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (259)
                              +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+..+.....  ..............++     
T Consensus       160 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~~~-----  224 (271)
T 3ek2_A          160 --------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI--KSFGKILDFVESNSPL-----  224 (271)
T ss_dssp             --------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC--HHHHHHHHHHHHHSTT-----
T ss_pred             --------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc--cchHHHHHHHHhcCCc-----
Confidence                    33445789999999999999988764   79999999999988753321  1122333333333222     


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ..+..++|+|+++++++
T Consensus       225 ----~~~~~pedva~~i~~l~  241 (271)
T 3ek2_A          225 ----KRNVTIEQVGNAGAFLL  241 (271)
T ss_dssp             ----SSCCCHHHHHHHHHHHH
T ss_pred             ----CCCCCHHHHHHHHHHHc
Confidence                23568899999999876

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.90  E-value=4.2e-23  Score=160.97  Aligned_cols=184  Identities=15%  Similarity=0.045  Sum_probs=138.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~v  101 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+..                   +|+++.+        +.++|++
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~-------------------~D~~~~~~v~~~~~~~g~id~l   63 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESEHTI-VHVASRQTG-------------------LDISDEKSVYHYFETIGAFDHL   63 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCSTTEE-EEEESGGGT-------------------CCTTCHHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEecCCcc-------------------cCCCCHHHHHHHHHHhCCCCEE
Confidence            56789999999999999999999999998 999887532                   5666655        4689999


Q ss_pred             EEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCCCcCCCCCCCCC
Q 025022          102 YHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR  173 (259)
Q Consensus       102 i~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~  173 (259)
                      ||+||....     +...++++..+++|+.++.++++++.+.-   .+||++||...+.                +..+.
T Consensus        64 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------~~~~~  127 (223)
T 3uce_A           64 IVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK----------------VVANT  127 (223)
T ss_dssp             EECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS----------------CCTTC
T ss_pred             EECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc----------------CCCCc
Confidence            999997622     12234567789999999999999987652   2899999987654                34455


Q ss_pred             CchHHHHHHHHHHHHHHHHHhC-CcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHH
Q 025022          174 SCYDEGKRVAETLMFDYHRQHG-IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC  252 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~~-~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  252 (259)
                      ..|+.+|.+.+.+.+.++.+.+ +++..++||.+.++............+........+         ...+.+++|+|+
T Consensus       128 ~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~dvA~  198 (223)
T 3uce_A          128 YVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLP---------VGKVGEASDIAM  198 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHST---------TCSCBCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCC---------CCCccCHHHHHH
Confidence            7899999999999999998865 999999999999875432222222223333333322         124668999999


Q ss_pred             HHHhhh
Q 025022          253 KSCFLA  258 (259)
Q Consensus       253 ~~~~~l  258 (259)
                      ++++++
T Consensus       199 ~~~~l~  204 (223)
T 3uce_A          199 AYLFAI  204 (223)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998875

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=99.90  E-value=2.6e-23  Score=163.87  Aligned_cols=202  Identities=17%  Similarity=0.092  Sum_probs=149.1

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc-----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~-----------   94 (259)
                      .+++++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..+++.. ..++..+.+|+++++           
T Consensus         4 ~f~L~gKvalVTGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (255)
T 4g81_D            4 LFDLTGKTALVTGSARGLGFAYAEGLAAAGAR-VILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDA   82 (255)
T ss_dssp             TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999 99999865433332222211 347888999999988           


Q ss_pred             -cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----H-hCC-eEEEEecceeecCCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----R-VGA-RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~-~~~-~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                       +.++|++||+||.....    ...++++..+++|+.++..+.+++.    + .+. +||++||.....           
T Consensus        83 ~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~-----------  151 (255)
T 4g81_D           83 EGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA-----------  151 (255)
T ss_dssp             TTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------
T ss_pred             HCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC-----------
Confidence             67899999999976542    2345678899999999999887653    2 244 999999987543           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCC
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVV--SNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  238 (259)
                           +......|+.+|.+...+.+.++.+   +||++..|.||.+..|....    ..  ..+...+....|+..    
T Consensus       152 -----~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~----~~~~~~~~~~~~~~~Pl~R----  218 (255)
T 4g81_D          152 -----ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTA----LIEDKQFDSWVKSSTPSQR----  218 (255)
T ss_dssp             -----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHH----HHTCHHHHHHHHHHSTTCS----
T ss_pred             -----CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhc----ccCCHHHHHHHHhCCCCCC----
Confidence                 3334467999999999999999876   48999999999998764211    11  122223333333322    


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                           +...+|+|.++++++
T Consensus       219 -----~g~pediA~~v~fL~  233 (255)
T 4g81_D          219 -----WGRPEELIGTAIFLS  233 (255)
T ss_dssp             -----CBCGGGGHHHHHHHH
T ss_pred             -----CcCHHHHHHHHHHHh
Confidence                 446799999999886

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.90  E-value=6.2e-23  Score=163.77  Aligned_cols=198  Identities=13%  Similarity=0.029  Sum_probs=138.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++++++||||+|+||+++++.|+++|++ |++++|+.....+..+++. ...++.++.+|+++.+            +.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAK-ILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45789999999999999999999999998 9998886443222222211 1246888999999987            45


Q ss_pred             CcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||......    ..++++..+++|+.++..+++++.    +.+. +||++||...+.               
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~---------------  145 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS---------------  145 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC---------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc---------------
Confidence            8999999999764321    234567889999999998887764    3455 999999987654               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                       +......|+.+|.+.+.+.+.++.+. +++++.++||.+..+....    .    ..    ........  .....++.
T Consensus       146 -~~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~----~----~~----~~~~~~~~--~~~~~~~~  210 (264)
T 3tfo_A          146 -VVPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGT----I----TH----EETMAAMD--TYRAIALQ  210 (264)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC-------------------------------------CCC
T ss_pred             -cCCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCccccc----c----cc----hhHHHHHH--hhhccCCC
Confidence             33445679999999999999998775 8999999999988764211    0    00    00000000  01112468


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      .+|+|+++++++
T Consensus       211 pedvA~~v~~l~  222 (264)
T 3tfo_A          211 PADIARAVRQVI  222 (264)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.90  E-value=6.1e-23  Score=166.92  Aligned_cols=166  Identities=19%  Similarity=0.053  Sum_probs=129.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC--------cchhhh----c-cCCCceeEeecccCccc-
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--------KDNLRK----W-IGHPRFELIRHDVTEPL-   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--------~~~~~~----~-~~~~~~~~~~~dl~~~~-   94 (259)
                      .+++++++||||+|+||+++++.|+++|++ |++++|+....        .+.+..    . ....++.++.+|+++.+ 
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGAD-IIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDA  103 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence            367899999999999999999999999999 88888763211        111111    1 11357889999999987 


Q ss_pred             -----------cCCcCEEEEccCCCCccc-----cccChhHHHHHhhhhHHHHHHHHHHh----C-C-eEEEEecceeec
Q 025022           95 -----------LIEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV----G-A-RILLTSTSEVYG  152 (259)
Q Consensus        95 -----------~~~~d~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~-~~i~~Ss~~~~~  152 (259)
                                 +.++|++||+||......     ..++++..+++|+.++..+++++...    + . +||++||...+.
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~  183 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR  183 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc
Confidence                       468999999999764321     33456789999999999999887542    3 4 999999987654


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCC
Q 025022          153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRM  211 (259)
Q Consensus       153 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~  211 (259)
                                      +......|+.+|.+.+.+.+.++.+.   ++++..++||.+.++..
T Consensus       184 ----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~  229 (299)
T 3t7c_A          184 ----------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPML  229 (299)
T ss_dssp             ----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTT
T ss_pred             ----------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccc
Confidence                            33445689999999999999998775   79999999999998763

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.90  E-value=3.5e-23  Score=164.76  Aligned_cols=162  Identities=19%  Similarity=0.075  Sum_probs=123.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      +|+++||||+|+||+++++.|+++|++ |++++|+.....+..+... ...++.++.+|+++.+            +.++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFA-VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999999999999998 9998886432222111111 1246888999999977            3589


Q ss_pred             CEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           99 DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        99 d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      |++||+||.....    ...++++..+++|+.++..+++++.+    .+ . +||++||...+.                
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------  144 (256)
T 1geg_A           81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV----------------  144 (256)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC----------------
Confidence            9999999965431    12344677899999999888877643    45 4 999999986543                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                      +......|+.+|.+.+.+.+.++.+   +++++++++||.+.++.
T Consensus       145 ~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~  189 (256)
T 1geg_A          145 GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPM  189 (256)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccch
Confidence            2233467999999999999998876   48999999999998864

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.90  E-value=2e-22  Score=161.28  Aligned_cols=201  Identities=11%  Similarity=-0.016  Sum_probs=147.3

Q ss_pred             ccCCCEEEEEcCchh--hhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh---ccCCCceeEeecccCccc---------
Q 025022           29 FQSNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK---WIGHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~--iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~dl~~~~---------   94 (259)
                      ++++++++||||+|+  ||+++++.|+++|++ |++++|+... .+..++   .....++.++.+|+++.+         
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   81 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYAGERL-EKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASI   81 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESSGGG-HHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecCchHH-HHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence            367899999999988  999999999999998 8888886422 222222   222337899999999987         


Q ss_pred             ---cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHhC--C-eEEEEecceeecCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                         +.++|++||+||....        +....+.+..+++|+.++..+++++.+.-  . +||++||...+.        
T Consensus        82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--------  153 (266)
T 3oig_A           82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL--------  153 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS--------
T ss_pred             HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc--------
Confidence               3589999999997641        12233467788999999999999987653  2 999999987554        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (259)
                              +......|+.+|.+.+.+.+.++.+.   +++++.++||.+..+......  .............+.     
T Consensus       154 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~~~~~~~~~~-----  218 (266)
T 3oig_A          154 --------VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGIS--DFNSILKDIEERAPL-----  218 (266)
T ss_dssp             --------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT--THHHHHHHHHHHSTT-----
T ss_pred             --------cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccc--chHHHHHHHHhcCCC-----
Confidence                    33445689999999999999988764   799999999999886533211  112233333322221     


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ..+.+++|+|+++++++
T Consensus       219 ----~~~~~p~dva~~v~~l~  235 (266)
T 3oig_A          219 ----RRTTTPEEVGDTAAFLF  235 (266)
T ss_dssp             ----SSCCCHHHHHHHHHHHH
T ss_pred             ----CCCCCHHHHHHHHHHHc
Confidence                23568899999998875

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.90  E-value=4.5e-23  Score=165.66  Aligned_cols=204  Identities=17%  Similarity=0.094  Sum_probs=146.7

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc-----------c
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL-----------L   95 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~-----------~   95 (259)
                      ..+++++++||||+|+||+++++.|+++|++ |++++|+.....+..++.. ...++.++.+|+++.+           .
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~  107 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAH-VILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI  107 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence            4467899999999999999999999999998 9999987655443333221 1357889999999987           2


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ...++++..+++|+.++.++++++    ++.+. +||++||...+.              
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~--------------  173 (275)
T 4imr_A          108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR--------------  173 (275)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS--------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC--------------
Confidence            4899999999965432    123456778999999999999887    34555 999999987554              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCC-CeEEecCCceee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGE-PLTVQAPGTQTR  242 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  242 (259)
                        +..+...|+.+|.+.+.+.+.++.+.   +++++.++||.+..+...... .............. ++         .
T Consensus       174 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~~~p~---------~  241 (275)
T 4imr_A          174 --PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRR-AQDPEGWDEYVRTLNWM---------G  241 (275)
T ss_dssp             --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHH-HHCHHHHHHHHHHHSTT---------C
T ss_pred             --CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCccccccc-ccChHHHHHHHhhcCcc---------C
Confidence              33444679999999999999998775   899999999999876311000 00011111111111 11         1


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+..++|+|+++++++
T Consensus       242 r~~~pedvA~~v~fL~  257 (275)
T 4imr_A          242 RAGRPEEMVGAALFLA  257 (275)
T ss_dssp             SCBCGGGGHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            2557899999999876

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.90  E-value=4.1e-23  Score=166.44  Aligned_cols=200  Identities=15%  Similarity=0.070  Sum_probs=139.0

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~-----------   94 (259)
                      ..+++++++||||+|+||.++++.|+++|++ |++++|+.....+..++..  ....+.++.+|+++.+           
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  107 (281)
T 4dry_A           29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYS-VVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA  107 (281)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3457899999999999999999999999998 9999886543222222111  1123588999999987           


Q ss_pred             -cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHH----hC--C-eEEEEecceeecCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VG--A-RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~-~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                       +.++|++||+||....     +...++++..+++|+.++..+++++.+    .+  . +||++||...+.         
T Consensus       108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~---------  178 (281)
T 4dry_A          108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT---------  178 (281)
T ss_dssp             HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC---------
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC---------
Confidence             4689999999997532     122345677999999998888877643    33  3 999999986543         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                             +..+...|+.+|.+.+.+.+.++.+   +++++..++||.+..+....        +    ...  .......
T Consensus       179 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--------~----~~~--~~~~~~~  237 (281)
T 4dry_A          179 -------PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTAR--------M----STG--VLQANGE  237 (281)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------------------CE--EECTTSC
T ss_pred             -------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhh--------h----cch--hhhhhhc
Confidence                   3345578999999999999999876   58999999999998764211        0    000  0000011


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .....++.++|+|+++++++
T Consensus       238 ~~~~~~~~pedvA~~v~fL~  257 (281)
T 4dry_A          238 VAAEPTIPIEHIAEAVVYMA  257 (281)
T ss_dssp             EEECCCBCHHHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHh
Confidence            12234789999999999875

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.90  E-value=8.4e-23  Score=165.87  Aligned_cols=205  Identities=15%  Similarity=0.055  Sum_probs=144.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CC---ceeEeecccCccc----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HP---RFELIRHDVTEPL----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~dl~~~~----------   94 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++... ..   ++.++.+|+++.+          
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  101 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL  101 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            366899999999999999999999999998 99998864332222221111 12   6889999999987          


Q ss_pred             --cCCcCEEEEccCCCCcc------ccccChhHHHHHhhhhHHHHHHHHHHh----CCeEEEEecceeecCCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                        +.++|++||+||.....      ...++++..+++|+.++.++++++.+.    +.+||++||...+..         
T Consensus       102 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~---------  172 (297)
T 1xhl_A          102 AKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ---------  172 (297)
T ss_dssp             HHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS---------
T ss_pred             HhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccC---------
Confidence              35899999999965431      123456789999999999998887543    349999999876542         


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-ccH----HHHHHHHHHcCCCeEE
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDD-GRV----VSNFIAQAIRGEPLTV  234 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~-~~~----~~~~~~~~~~~~~~~~  234 (259)
                            ...+...|+.+|.+.+.+.+.++.+   .++++++++||++.++...... ...    ............    
T Consensus       173 ------~~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~----  242 (297)
T 1xhl_A          173 ------AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECI----  242 (297)
T ss_dssp             ------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTC----
T ss_pred             ------CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhcC----
Confidence                  1134467999999999999998865   5899999999999886421100 000    001111111111    


Q ss_pred             ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          235 QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       235 ~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                           ....+..++|+|+++++++
T Consensus       243 -----p~~r~~~pedvA~~v~~l~  261 (297)
T 1xhl_A          243 -----PVGHCGKPEEIANIIVFLA  261 (297)
T ss_dssp             -----TTSSCBCHHHHHHHHHHHH
T ss_pred             -----CCCCCcCHHHHHHHHHHHh
Confidence                 1124789999999999876

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.90  E-value=2.4e-23  Score=166.24  Aligned_cols=197  Identities=19%  Similarity=0.153  Sum_probs=144.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..++ +. .++.++.+|+++.+            +.
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGAS-LVAVDREERLLAEAVAA-LE-AEAIAVVADVSDPKAVEAVFAEALEEFG   79 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHT-CC-SSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHH-hc-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            367899999999999999999999999998 99998864332222222 21 46888999999977            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      ++|++||+||.....    ...++++..+++|+.++.++++++.+.   +.+||++||...++.                
T Consensus        80 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~----------------  143 (263)
T 2a4k_A           80 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA----------------  143 (263)
T ss_dssp             CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH----------------
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCC----------------
Confidence            799999999975431    122345778999999999999998765   239999999875521                


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                       .+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++......    ...........+.         ..+++
T Consensus       144 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~----~~~~~~~~~~~p~---------~~~~~  209 (263)
T 2a4k_A          144 -FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLP----PWAWEQEVGASPL---------GRAGR  209 (263)
T ss_dssp             -HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSC----HHHHHHHHHTSTT---------CSCBC
T ss_pred             -CCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcC----HHHHHHHHhcCCC---------CCCcC
Confidence             123579999999999999888764   799999999999987532211    1222222222221         23678


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|+|+++++++
T Consensus       210 p~dvA~~v~~l~  221 (263)
T 2a4k_A          210 PEEVAQAALFLL  221 (263)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.90  E-value=1.2e-22  Score=159.41  Aligned_cols=190  Identities=17%  Similarity=0.186  Sum_probs=142.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVD   99 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d   99 (259)
                      +|+|+||||++.||+++++.|+++|++ |++.+|+.+...+..+   +..++..+.+|+++++            ++++|
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iD   77 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDK-VCFIDIDEKRSADFAK---ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRID   77 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHT---TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHH---hcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            489999999999999999999999999 9999886433222222   2357889999999987            67899


Q ss_pred             EEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          100 QIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       100 ~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      ++||+||.....    ...++++..+++|+.++..+.+++.+    .+.++|++||...+.                +..
T Consensus        78 iLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~----------------~~~  141 (247)
T 3ged_A           78 VLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQ----------------SEP  141 (247)
T ss_dssp             EEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTS----------------CCT
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccccc----------------CCC
Confidence            999999976542    23356788999999999998887643    344999999986543                333


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHH
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD  249 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  249 (259)
                      ....|+.+|.+...+.+.++.+.  ++++..+.||.+-.+...        .+.+......|+.         .+...+|
T Consensus       142 ~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~--------~~~~~~~~~~Pl~---------R~g~ped  204 (247)
T 3ged_A          142 DSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQ--------EFTQEDCAAIPAG---------KVGTPKD  204 (247)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC-----------CCHHHHHTSTTS---------SCBCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcH--------HHHHHHHhcCCCC---------CCcCHHH
Confidence            34679999999999999998775  699999999998765422        1112222222322         2457899


Q ss_pred             HHHHHHhhh
Q 025022          250 MVCKSCFLA  258 (259)
Q Consensus       250 ~a~~~~~~l  258 (259)
                      +|.++++|+
T Consensus       205 iA~~v~fL~  213 (247)
T 3ged_A          205 ISNMVLFLC  213 (247)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.90  E-value=3.9e-23  Score=164.60  Aligned_cols=195  Identities=18%  Similarity=0.173  Sum_probs=141.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----------cCCc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------LIEV   98 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----------~~~~   98 (259)
                      +++++++||||+|+||++++++|+++|++ |++++|+..   +..+..  ..++.++.+|+++.+           +.++
T Consensus         7 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~---~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~g~i   80 (257)
T 3tl3_A            7 IRDAVAVVTGGASGLGLATTKRLLDAGAQ-VVVLDIRGE---DVVADL--GDRARFAAADVTDEAAVASALDLAETMGTL   80 (257)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCH---HHHHHT--CTTEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             ecCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCchH---HHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence            56889999999999999999999999998 888888422   222222  357899999999987           3589


Q ss_pred             CEEEEccCCCCcc--------ccccChhHHHHHhhhhHHHHHHHHHHh------------CC-eEEEEecceeecCCCCC
Q 025022           99 DQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV------------GA-RILLTSTSEVYGDPLVH  157 (259)
Q Consensus        99 d~vi~~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~------------~~-~~i~~Ss~~~~~~~~~~  157 (259)
                      |++||+||.....        ...++++..+++|+.++..+++++.+.            +. +||++||...+.     
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----  155 (257)
T 3tl3_A           81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD-----  155 (257)
T ss_dssp             EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C-----
T ss_pred             CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC-----
Confidence            9999999965321        233457889999999999999988642            23 899999987654     


Q ss_pred             CCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEE
Q 025022          158 PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTV  234 (259)
Q Consensus       158 ~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (259)
                                 +..+...|+.+|.+.+.+.+.++.+   ++++++.++||.+..+....    .............+.  
T Consensus       156 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~~~--  218 (257)
T 3tl3_A          156 -----------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLAS----LPEEARASLGKQVPH--  218 (257)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC-------CHHHHHHHHHTSSS--
T ss_pred             -----------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhh----ccHHHHHHHHhcCCC--
Confidence                       3334467999999999999998876   47999999999998876332    112222222222221  


Q ss_pred             ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          235 QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       235 ~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                            ...+.+++|+|+++++++
T Consensus       219 ------~~r~~~p~dva~~v~~l~  236 (257)
T 3tl3_A          219 ------PSRLGNPDEYGALAVHII  236 (257)
T ss_dssp             ------SCSCBCHHHHHHHHHHHH
T ss_pred             ------CCCccCHHHHHHHHHHHh
Confidence                  024678999999999875

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.90  E-value=3e-23  Score=163.19  Aligned_cols=182  Identities=17%  Similarity=0.115  Sum_probs=136.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c--
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L--   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~--   95 (259)
                      |++|+++||||+|+||++++++|+++|++ |++++|+.....         ....++.+|+++.+            +  
T Consensus         1 m~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   70 (236)
T 1ooe_A            1 MSSGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSANDQA---------DSNILVDGNKNWTEQEQSILEQTASSLQG   70 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCCTTS---------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEecCccccc---------cccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            45789999999999999999999999998 999988654322         13567889999876            2  


Q ss_pred             CCcCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           96 IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      .++|++||+||.....     ....+++..+++|+.++..+++++.+.-   .+||++||...+.               
T Consensus        71 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------------  135 (236)
T 1ooe_A           71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG---------------  135 (236)
T ss_dssp             CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS---------------
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc---------------
Confidence            5899999999965421     2234567889999999999999987642   2999999987654               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                       +..+...|+.+|.+.+.+.+.++.+.     ++++++++||++.++.            ........         ...
T Consensus       136 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~------------~~~~~~~~---------~~~  193 (236)
T 1ooe_A          136 -PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM------------NRKWMPNA---------DHS  193 (236)
T ss_dssp             -CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH------------HHHHSTTC---------CGG
T ss_pred             -CCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc------------hhhcCCCc---------ccc
Confidence             33445689999999999999998765     4999999999988753            11111111         112


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .++..+|+|+++++++
T Consensus       194 ~~~~~~dvA~~i~~~l  209 (236)
T 1ooe_A          194 SWTPLSFISEHLLKWT  209 (236)
T ss_dssp             GCBCHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHH
Confidence            3567899999987543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.90  E-value=4e-23  Score=165.25  Aligned_cols=200  Identities=19%  Similarity=0.116  Sum_probs=139.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++++||||+|+||+++++.|+++|++ |++..++.....+.+...+  ...++.++.+|+++.+            +
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFT-VVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCE-EEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999999998 7776543332222222211  1347889999999987            4


Q ss_pred             CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      .++|++||+||......    ..++++..+++|+.++.++++++.+.-   .+||++||...+.                
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------  167 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL----------------  167 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH----------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc----------------
Confidence            58999999999764321    223467788899999999999887642   2999999987654                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +......|+.+|.+.+.+.+.++.+.   ++++..++||.+..+.....   .............+         ...+.
T Consensus       168 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~p---------~~r~~  235 (267)
T 3u5t_A          168 LHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEG---KSDEVRDRFAKLAP---------LERLG  235 (267)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC--------------CHHHHHTSST---------TCSCB
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcccccc---CCHHHHHHHHhcCC---------CCCCc
Confidence            33344679999999999999998875   79999999999987652210   00111122222222         23467


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      .++|+|+++++++
T Consensus       236 ~pedvA~~v~~L~  248 (267)
T 3u5t_A          236 TPQDIAGAVAFLA  248 (267)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            8999999999876

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.90  E-value=1.2e-22  Score=161.88  Aligned_cols=162  Identities=18%  Similarity=0.133  Sum_probs=125.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC--CcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--SKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +|+++||||+|+||+++++.|+++|++ |++++|+...  ..+..+.... ..++.++.+|+++.+            +.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFD-IAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            579999999999999999999999998 8888886543  2221111111 246889999999976            35


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC--CeEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|++||+||.....    ...++++..+++|+.++.++++++.+    .+  .+||++||...+.              
T Consensus        81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  146 (258)
T 3a28_C           81 GFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ--------------  146 (258)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS--------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc--------------
Confidence            899999999975432    12345678899999999999888764    23  4999999987554              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                        +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.++.
T Consensus       147 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~  191 (258)
T 3a28_C          147 --GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGM  191 (258)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHH
T ss_pred             --CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChh
Confidence              23344689999999999999988763   8999999999987753

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.90  E-value=1.1e-22  Score=159.82  Aligned_cols=189  Identities=13%  Similarity=0.037  Sum_probs=139.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc--cCCCceeEeecccCccc------------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++||||+|+||++++++|+++|++ |+++.|+........++.  ....++.++.+|+++.+            +.+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYA-LALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            689999999999999999999999998 999988644332222221  11357889999999987            348


Q ss_pred             cCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      +|++||+||......    ..++++..+++|+.++.++++++.+    .+.++|++||...+.                +
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~----------------~  144 (235)
T 3l77_A           81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSAR----------------L  144 (235)
T ss_dssp             CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS----------------C
T ss_pred             CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcc----------------c
Confidence            999999999765422    3355678999999999999988754    344777777765432                2


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH-hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHH
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ-HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS  248 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  248 (259)
                      ......|+.+|.+.+.+.+.+..+ .+++++.++||.+..+......             .       . .....++.++
T Consensus       145 ~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~-------------~-------~-~~~~~~~~p~  203 (235)
T 3l77_A          145 IPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKP-------------G-------K-PKEKGYLKPD  203 (235)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCS-------------C-------C-CGGGTCBCHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccC-------------C-------c-ccccCCCCHH
Confidence            233467999999999999988544 3899999999999876422110             0       0 0112467899


Q ss_pred             HHHHHHHhhh
Q 025022          249 DMVCKSCFLA  258 (259)
Q Consensus       249 D~a~~~~~~l  258 (259)
                      |+|+++++++
T Consensus       204 dva~~v~~l~  213 (235)
T 3l77_A          204 EIAEAVRCLL  213 (235)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998876

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.90  E-value=4.7e-23  Score=169.05  Aligned_cols=183  Identities=17%  Similarity=0.223  Sum_probs=134.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~~  107 (259)
                      ++|+||||||+||++++++|+++|++ |++++|+.......++.+ ...+++++.+|+.+.+     +.++|+|||+++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~-V~~l~R~~~~~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~   89 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHP-TYVFTRPNSSKTTLLDEF-QSLGAIIVKGELDEHEKLVELMKKVDVVISALAF   89 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCC-EEEEECTTCSCHHHHHHH-HHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCc-EEEEECCCCchhhHHHHh-hcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence            58999999999999999999999998 999998764222222211 1247899999999876     6789999999974


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCC-CCchHHHHHHHH
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEGKRVAE  184 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~sK~~~e  184 (259)
                      .               ++.++.+++++|++.+ + +||+ |   +|+...    +|..     +..| ...| .+|...|
T Consensus        90 ~---------------~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~~-----~~~p~~~~y-~sK~~~e  140 (318)
T 2r6j_A           90 P---------------QILDQFKILEAIKVAGNIKRFLP-S---DFGVEE----DRIN-----ALPPFEALI-ERKRMIR  140 (318)
T ss_dssp             G---------------GSTTHHHHHHHHHHHCCCCEEEC-S---CCSSCT----TTCC-----CCHHHHHHH-HHHHHHH
T ss_pred             h---------------hhHHHHHHHHHHHhcCCCCEEEe-e---ccccCc----cccc-----CCCCcchhH-HHHHHHH
Confidence            3               1556789999999998 7 8874 3   344211    1211     2223 3467 9999998


Q ss_pred             HHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       185 ~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+++    +.+++++++||+.++++        +++.+......+..+.++++++..++|++++|+++++..++
T Consensus       141 ~~~~----~~~~~~~~lr~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l  202 (318)
T 2r6j_A          141 RAIE----EANIPYTYVSANCFASY--------FINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVA  202 (318)
T ss_dssp             HHHH----HTTCCBEEEECCEEHHH--------HHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHT
T ss_pred             HHHH----hcCCCeEEEEcceehhh--------hhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHh
Confidence            8874    46899999999887763        33333333334556677788888999999999999998875

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.89  E-value=1.8e-22  Score=163.38  Aligned_cols=197  Identities=18%  Similarity=0.093  Sum_probs=142.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC-CCCcchhhhc--cCCCceeEeecccCc----cc--------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKW--IGHPRFELIRHDVTE----PL--------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~~~~~~~~--~~~~~~~~~~~dl~~----~~--------   94 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+. ....+..+..  ....++.++.+|+++    .+        
T Consensus        21 l~~k~~lVTGas~gIG~aia~~L~~~G~~-V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~   99 (288)
T 2x9g_A           21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYR-VVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINS   99 (288)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHHTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHH
Confidence            67899999999999999999999999998 99988865 2222111111  112468899999999    54        


Q ss_pred             ----cCCcCEEEEccCCCCcc--------------ccccChhHHHHHhhhhHHHHHHHHHHh----C------C-eEEEE
Q 025022           95 ----LIEVDQIYHLACPASPI--------------FYKYNPVKTIKTNVIGTLNMLGLAKRV----G------A-RILLT  145 (259)
Q Consensus        95 ----~~~~d~vi~~a~~~~~~--------------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~------~-~~i~~  145 (259)
                          +.++|++||+||.....              ....+++..+++|+.++..+++++.+.    +      . +||++
T Consensus       100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~i  179 (288)
T 2x9g_A          100 CFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNL  179 (288)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEE
Confidence                35899999999975421              112345678899999999998887542    2      4 89999


Q ss_pred             ecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHH
Q 025022          146 STSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNF  222 (259)
Q Consensus       146 Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~  222 (259)
                      ||...+.                +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.++++. . ..    ...
T Consensus       180 sS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~~----~~~  237 (288)
T 2x9g_A          180 CDAMVDQ----------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-MG----EEE  237 (288)
T ss_dssp             CCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-SC----HHH
T ss_pred             ecccccC----------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-cC----hHH
Confidence            9987554                33445689999999999999988764   8999999999999986 2 11    111


Q ss_pred             HHHHHcCCCeEEecCCceeeee-eeHHHHHHHHHhhh
Q 025022          223 IAQAIRGEPLTVQAPGTQTRSF-CYVSDMVCKSCFLA  258 (259)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~-i~v~D~a~~~~~~l  258 (259)
                      ........++         ..+ ..++|+|+++++++
T Consensus       238 ~~~~~~~~p~---------~r~~~~pedvA~~v~~l~  265 (288)
T 2x9g_A          238 KDKWRRKVPL---------GRREASAEQIADAVIFLV  265 (288)
T ss_dssp             HHHHHHTCTT---------TSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHhhCCC---------CCCCCCHHHHHHHHHHHh
Confidence            2222222221         123 58899999999876

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.89  E-value=5.5e-23  Score=163.10  Aligned_cols=180  Identities=16%  Similarity=0.094  Sum_probs=137.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      .++|+++||||+|+||+++++.|+++|++ |++++|+.....           -..+.+|+++.+            +.+
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~~~~~-----------~~~~~~d~~d~~~v~~~~~~~~~~~g~   87 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWN-TISIDFRENPNA-----------DHSFTIKDSGEEEIKSVIEKINSKSIK   87 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCTTS-----------SEEEECSCSSHHHHHHHHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCccccc-----------ccceEEEeCCHHHHHHHHHHHHHHcCC
Confidence            34689999999999999999999999998 999998654322           134567777766            457


Q ss_pred             cCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           98 VDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        98 ~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      +|++||+||....     .....+++..+++|+.++.++++++.+.-   .+||++||...+.                +
T Consensus        88 iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------------~  151 (251)
T 3orf_A           88 VDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN----------------R  151 (251)
T ss_dssp             EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------C
T ss_pred             CCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc----------------C
Confidence            9999999996532     12334567889999999999999987752   2899999987654                3


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      ..+...|+.+|.+.+.+.+.++.+     .++++++++||.+.++.            ........         ....+
T Consensus       152 ~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~------------~~~~~~~~---------~~~~~  210 (251)
T 3orf_A          152 TSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT------------NRKYMSDA---------NFDDW  210 (251)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH------------HHHHCTTS---------CGGGS
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc------------hhhhcccc---------ccccc
Confidence            445578999999999999999877     57999999999887742            11111111         23357


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ++++|+|+++++++
T Consensus       211 ~~~~dva~~i~~l~  224 (251)
T 3orf_A          211 TPLSEVAEKLFEWS  224 (251)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            78999999998875

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.89  E-value=1.3e-23  Score=171.57  Aligned_cols=188  Identities=16%  Similarity=0.203  Sum_probs=134.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC--cchhh--hccCCCceeEeecccCccc-----cCCcCEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNLR--KWIGHPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~--~~~~~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      +|+|+||||||+||+++++.|+++|++ |+++.|+....  .+..+  ..+...+++++.+|+.+.+     +.++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   82 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHP-TFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI   82 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCC-EEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEE
Confidence            578999999999999999999999998 99999875432  11111  1112357899999999876     67899999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCC-CCchHHH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDEG  179 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~s  179 (259)
                      |+++..               ++.++.+++++|++.+ + +||+ |+   |+..    .+|..     +..| ...| .+
T Consensus        83 ~~a~~~---------------~~~~~~~l~~aa~~~g~v~~~v~-S~---~g~~----~~~~~-----~~~p~~~~y-~s  133 (308)
T 1qyc_A           83 STVGSL---------------QIESQVNIIKAIKEVGTVKRFFP-SE---FGND----VDNVH-----AVEPAKSVF-EV  133 (308)
T ss_dssp             ECCCGG---------------GSGGGHHHHHHHHHHCCCSEEEC-SC---CSSC----TTSCC-----CCTTHHHHH-HH
T ss_pred             ECCcch---------------hhhhHHHHHHHHHhcCCCceEee-cc---cccC----ccccc-----cCCcchhHH-HH
Confidence            999743               1456789999999998 7 8874 43   4421    11211     3333 3568 99


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          180 KRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       180 K~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |...|.+++    +.+++++++||+.++|+.......    . ......+..+.++++++..++|++++|+|+++..++
T Consensus       134 K~~~e~~~~----~~~~~~~~~r~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l  203 (308)
T 1qyc_A          134 KAKVRRAIE----AEGIPYTYVSSNCFAGYFLRSLAQ----A-GLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAV  203 (308)
T ss_dssp             HHHHHHHHH----HHTCCBEEEECCEEHHHHTTTTTC----T-TCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTS
T ss_pred             HHHHHHHHH----hcCCCeEEEEeceecccccccccc----c-cccCCCCCceEEecCCCceEEEecHHHHHHHHHHHH
Confidence            999988874    458999999999988753211000    0 001123445677788888999999999999998765

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.89  E-value=9.3e-23  Score=163.47  Aligned_cols=200  Identities=18%  Similarity=0.165  Sum_probs=141.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+...... +....  .++.++.+|+++.+            +.
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~-~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   81 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDESGGRA-LEQEL--PGAVFILCDVTQEDDVKTLVSETIRRFG   81 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH-HHHHC--TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHH-HHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            367899999999999999999999999998 9998885432222 22222  25788999999987            35


Q ss_pred             CcCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....     ...++++..+++|+.++.++++++.+    .+.+||++||...+.               
T Consensus        82 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------------  146 (270)
T 1yde_A           82 RLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI---------------  146 (270)
T ss_dssp             CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH---------------
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccC---------------
Confidence            899999999975321     12234678899999999999988753    334999999985443               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC---CCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNI---DDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                       +......|+.+|.+.+.+.+.++.+   +++++++++||+++++....   ........ ........+         .
T Consensus       147 -~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~-~~~~~~~~p---------~  215 (270)
T 1yde_A          147 -GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRAS-IREGMLAQP---------L  215 (270)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHH-HHHHHHTST---------T
T ss_pred             -CCCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHH-HHHHhhcCC---------C
Confidence             1223467999999999999998866   58999999999999864110   00001001 111111111         1


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+...+|+|+++++++
T Consensus       216 ~r~~~p~dva~~v~~L~  232 (270)
T 1yde_A          216 GRMGQPAEVGAAAVFLA  232 (270)
T ss_dssp             SSCBCHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHc
Confidence            13568999999998875

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.89  E-value=5.7e-23  Score=164.67  Aligned_cols=201  Identities=15%  Similarity=0.091  Sum_probs=143.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcch-hhhcc-CCCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWI-GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~dl~~~~------------   94 (259)
                      .+++++++||||+|+||++++++|+++|++ |++++++....... ..... ...++.++.+|+++.+            
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  100 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMA-VAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLAD  100 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            356789999999999999999999999998 88887543222211 11111 1357899999999987            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      +.++|++||+||.....    ....+++..+++|+.++.++++++..    .+. +||++||...+.             
T Consensus       101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-------------  167 (269)
T 3gk3_A          101 FGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR-------------  167 (269)
T ss_dssp             HSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH-------------
T ss_pred             cCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc-------------
Confidence            35899999999976432    12345678899999999999887643    455 999999987654             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +..+...|+.+|.+.+.+.+.++.+.   ++++++++||.+..+....    .......    ..    +.......
T Consensus       168 ---~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~~~----~~----~~~~~~~~  232 (269)
T 3gk3_A          168 ---GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEA----VPQDVLE----AK----ILPQIPVG  232 (269)
T ss_dssp             ---CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC---------------CC----SGGGCTTS
T ss_pred             ---CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhh----hchhHHH----HH----hhhcCCcC
Confidence               33445789999999999999988764   7999999999998876322    1111110    00    01111223


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+.+++|+|+++++++
T Consensus       233 ~~~~p~dvA~~v~~L~  248 (269)
T 3gk3_A          233 RLGRPDEVAALIAFLC  248 (269)
T ss_dssp             SCBCHHHHHHHHHHHT
T ss_pred             CccCHHHHHHHHHHHh
Confidence            4678999999998875

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.89  E-value=2.9e-22  Score=162.02  Aligned_cols=166  Identities=19%  Similarity=0.123  Sum_probs=129.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC------------cchhhh---cc--CCCceeEeecccC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------KDNLRK---WI--GHPRFELIRHDVT   91 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------------~~~~~~---~~--~~~~~~~~~~dl~   91 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+....            .+.++.   .+  ...++.++.+|++
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~   86 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGAD-IIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR   86 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence            357899999999999999999999999999 98888763211            111111   11  1357889999999


Q ss_pred             ccc------------cCCcCEEEEccCCCCccc-----cccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecc
Q 025022           92 EPL------------LIEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTS  148 (259)
Q Consensus        92 ~~~------------~~~~d~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~  148 (259)
                      +.+            +.++|++||+||......     ..++++..+++|+.++.++++++.+    .+ . +||++||.
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV  166 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence            987            458999999999754321     2345678999999999999987743    33 3 99999998


Q ss_pred             eeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC
Q 025022          149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM  211 (259)
Q Consensus       149 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~  211 (259)
                      ..+.                +......|+.+|.+.+.+.+.++.+   +++++..++||.+..+..
T Consensus       167 ~~~~----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~  216 (286)
T 3uve_A          167 GGLK----------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPML  216 (286)
T ss_dssp             GGTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTT
T ss_pred             hhcc----------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcc
Confidence            7654                3344568999999999999999877   579999999999998763

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.89  E-value=1.2e-22  Score=160.62  Aligned_cols=189  Identities=15%  Similarity=0.109  Sum_probs=141.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHh-cCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVD   99 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d   99 (259)
                      ++|+++||||+|+||+++++.|++ .|+. |++.+|+....         ...+.++.+|+++.+          ..++|
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~-v~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id   72 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHT-VINIDIQQSFS---------AENLKFIKADLTKQQDITNVLDIIKNVSFD   72 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEE-EEEEESSCCCC---------CTTEEEEECCTTCHHHHHHHHHHTTTCCEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcE-EEEeccccccc---------cccceEEecCcCCHHHHHHHHHHHHhCCCC
Confidence            578999999999999999999999 6776 88888754321         135788999999987          24799


Q ss_pred             EEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHhCC---eEEEEecceeecCCCCCCCCCCCcCCCCCCCC
Q 025022          100 QIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV  172 (259)
Q Consensus       100 ~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~  172 (259)
                      ++||+||.....    ...++++..+++|+.++..+++++.+.-.   +||++||...+.                +..+
T Consensus        73 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------~~~~  136 (244)
T 4e4y_A           73 GIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI----------------AKPN  136 (244)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC----------------CCTT
T ss_pred             EEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc----------------CCCC
Confidence            999999975431    23345678899999999999999876532   899999987654                3344


Q ss_pred             CCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHH-----------HHHHHHcCCCeEEecCC
Q 025022          173 RSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSN-----------FIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  238 (259)
                      ...|+.+|.+.+.+.+.++.+   +++++++++||.+.++...    .....           .........        
T Consensus       137 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--------  204 (244)
T 4e4y_A          137 SFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYR----NLIQKYANNVGISFDEAQKQEEKEF--------  204 (244)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHH----HHHHHHHHHHTCCHHHHHHHHHTTS--------
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhH----HHHHhhhhhcCCCHHHHHHHHhhcC--------
Confidence            568999999999999999874   5899999999999886411    11111           111112221        


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                       ....+.+++|+|+++++++
T Consensus       205 -p~~r~~~p~dvA~~v~~l~  223 (244)
T 4e4y_A          205 -PLNRIAQPQEIAELVIFLL  223 (244)
T ss_dssp             -TTSSCBCHHHHHHHHHHHH
T ss_pred             -CCCCCcCHHHHHHHHHHHh
Confidence             2234778999999999876

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.89  E-value=4.5e-23  Score=166.17  Aligned_cols=203  Identities=14%  Similarity=0.022  Sum_probs=140.3

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~----------   94 (259)
                      ..+++++++||||+|+||+++++.|+++|++ |++++|+........+..   .....+.++.+|+++.+          
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~  106 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGLK-VVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR  106 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            3467899999999999999999999999998 999988643222211111   11135788999999987          


Q ss_pred             --cCCcCEEEEccCCCCccc----cccChhHHHHHhhhh----HHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIG----TLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~----~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                        +.++|+|||+||......    ...+++..+++|+.+    +..++..+++.+   .+||++||...+...       
T Consensus       107 ~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~-------  179 (279)
T 1xg5_A          107 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL-------  179 (279)
T ss_dssp             HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-------
T ss_pred             HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccC-------
Confidence              248999999999654321    234567789999999    555666666665   399999998765320       


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (259)
                             +..+...|+.+|.+.+.+.+.++.+     .++++++++|+.+.++......... ..   .....       
T Consensus       180 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~-~~---~~~~~-------  241 (279)
T 1xg5_A          180 -------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKD-PE---KAAAT-------  241 (279)
T ss_dssp             -------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTC-HH---HHHHH-------
T ss_pred             -------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccC-hh---HHhhh-------
Confidence                   3344568999999999999888765     3699999999999876410000000 00   00000       


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                        .....+++++|+|+++++++
T Consensus       242 --~~~~~~~~~~dvA~~i~~l~  261 (279)
T 1xg5_A          242 --YEQMKCLKPEDVAEAVIYVL  261 (279)
T ss_dssp             --HC---CBCHHHHHHHHHHHH
T ss_pred             --cccccCCCHHHHHHHHHHHh
Confidence              01224679999999998875

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.89  E-value=2.1e-22  Score=159.46  Aligned_cols=194  Identities=13%  Similarity=0.072  Sum_probs=135.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcCE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQ  100 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d~  100 (259)
                      |+++||||+|+||+++++.|+++|++ |++++|+.....+..++ + ..++.++.+|+++.+            +.++|+
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   77 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHK-VIATGRRQERLQELKDE-L-GDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDI   77 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHH-H-CTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHH-h-cCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            58999999999999999999999998 99988864322222222 2 146889999999977            347999


Q ss_pred             EEEccCCCC-c----cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          101 IYHLACPAS-P----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       101 vi~~a~~~~-~----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      +||+||... .    ....++++..+++|+.++..+++++.    +.+. +||++||...+.                +.
T Consensus        78 lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~----------------~~  141 (248)
T 3asu_A           78 LVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW----------------PY  141 (248)
T ss_dssp             EEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS----------------CC
T ss_pred             EEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhcc----------------CC
Confidence            999999652 1    12234567899999999999988775    4455 999999987553                33


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccC-CCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYG-PRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      .+...|+.+|.+.+.+.+.++.+.   ++++++++||.+.| +....    ....- ....    ....    ....++.
T Consensus       142 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~----~~~~~-~~~~----~~~~----~~~~~~~  208 (248)
T 3asu_A          142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNV----RFKGD-DGKA----EKTY----QNTVALT  208 (248)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-----------------------------------CCBC
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhh----cccCc-hHHH----HHHH----hccCCCC
Confidence            445689999999999999988764   79999999999994 43110    00000 0000    0000    0112468


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|+|+++++++
T Consensus       209 p~dvA~~v~~l~  220 (248)
T 3asu_A          209 PEDVSEAVWWVS  220 (248)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.89  E-value=4.3e-23  Score=168.40  Aligned_cols=188  Identities=15%  Similarity=0.149  Sum_probs=133.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC-CCCc--chhhh--ccCCCceeEeecccCccc-----cCCcCEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSK--DNLRK--WIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~~--~~~~~--~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      +|+|+||||||+||++++++|+++|++ |++++|+. ....  +..+.  .+...+++++.+|+.+.+     +.++|+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v   80 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNP-TYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCC-EEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCc-EEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEE
Confidence            578999999999999999999999998 99999875 1111  11110  111247889999999876     6789999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCC-CCchHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDE  178 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~  178 (259)
                      ||+++...               +.++.+++++|++.+ + +||+ |   +|+...    +|..     +..| ...| .
T Consensus        81 i~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~~-----~~~p~~~~y-~  131 (307)
T 2gas_A           81 ICAAGRLL---------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLDV----DRHD-----AVEPVRQVF-E  131 (307)
T ss_dssp             EECSSSSC---------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSCT----TSCC-----CCTTHHHHH-H
T ss_pred             EECCcccc---------------cccHHHHHHHHHhcCCceEEee-c---ccccCc----cccc-----CCCcchhHH-H
Confidence            99998532               456788999999998 7 8873 3   344211    1211     3333 3578 9


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       179 sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +|...|.+++    ..+++++++||+.++++.....    ... .........+.++++++..++|++++|+|+++..++
T Consensus       132 sK~~~e~~~~----~~~i~~~~lrp~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l  202 (307)
T 2gas_A          132 EKASIRRVIE----AEGVPYTYLCCHAFTGYFLRNL----AQL-DATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAA  202 (307)
T ss_dssp             HHHHHHHHHH----HHTCCBEEEECCEETTTTGGGT----TCT-TCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HcCCCeEEEEcceeeccccccc----ccc-ccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHH
Confidence            9999998874    4689999999999988642110    000 000113345667778888999999999999998775

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.89  E-value=3.5e-23  Score=170.02  Aligned_cols=184  Identities=17%  Similarity=0.221  Sum_probs=134.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC-CCC-cch---hhhccCCCceeEeecccCccc-----cCCcCEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGS-KDN---LRKWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~-~~~---~~~~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      +|+|+||||||+||++++++|+++|++ |++++|+. ... .+.   +.. +...+++++.+|+.+.+     +.++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~~~~~~~~~~~~l~~-~~~~~v~~v~~D~~d~~~l~~a~~~~d~v   81 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHP-TFIYARPLTPDSTPSSVQLREE-FRSMGVTIIEGEMEEHEKMVSVLKQVDIV   81 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCC-EEEEECCCCTTCCHHHHHHHHH-HHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCc-EEEEECCcccccChHHHHHHHH-hhcCCcEEEEecCCCHHHHHHHHcCCCEE
Confidence            578999999999999999999999998 99999875 211 111   111 11247899999999877     6789999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCC-CCchHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV-RSCYDE  178 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~-~~~Y~~  178 (259)
                      ||+++...               +.++.+++++|++.+ + +||+ |   +|+...    +|..     +..| ...| .
T Consensus        82 i~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~----~~~~-----~~~p~~~~y-~  132 (321)
T 3c1o_A           82 ISALPFPM---------------ISSQIHIINAIKAAGNIKRFLP-S---DFGCEE----DRIK-----PLPPFESVL-E  132 (321)
T ss_dssp             EECCCGGG---------------SGGGHHHHHHHHHHCCCCEEEC-S---CCSSCG----GGCC-----CCHHHHHHH-H
T ss_pred             EECCCccc---------------hhhHHHHHHHHHHhCCccEEec-c---ccccCc----cccc-----cCCCcchHH-H
Confidence            99997431               567789999999998 7 8872 3   344211    1211     2233 3578 9


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHH---HHHcCCCeEEecCCceeeeeeeHHHHHHHHH
Q 025022          179 GKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIA---QAIRGEPLTVQAPGTQTRSFCYVSDMVCKSC  255 (259)
Q Consensus       179 sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  255 (259)
                      +|...|.+++    ..+++++++||+.++++.        ...+..   ....+..+.++++++..++|++++|+|+++.
T Consensus       133 sK~~~e~~~~----~~~~~~~~lrp~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~  200 (321)
T 3c1o_A          133 KKRIIRRAIE----AAALPYTYVSANCFGAYF--------VNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTI  200 (321)
T ss_dssp             HHHHHHHHHH----HHTCCBEEEECCEEHHHH--------HHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHH
T ss_pred             HHHHHHHHHH----HcCCCeEEEEeceecccc--------ccccccccccccccCceEEecCCCcceeEeeHHHHHHHHH
Confidence            9999998874    458999999999888742        222222   1124456777888888999999999999998


Q ss_pred             hhh
Q 025022          256 FLA  258 (259)
Q Consensus       256 ~~l  258 (259)
                      .++
T Consensus       201 ~~l  203 (321)
T 3c1o_A          201 KVA  203 (321)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.89  E-value=1.9e-22  Score=161.01  Aligned_cols=164  Identities=16%  Similarity=0.059  Sum_probs=125.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+........+.... ..++.++.+|+++.+            +.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            56899999999999999999999999998 98888864322221121111 246888999999976            35


Q ss_pred             CcCEEEEccCCC-Cc----cccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPA-SP----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~-~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|++||+||.. ..    ....++++..+++|+.++.++++++.+    .+. +||++||...+.              
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  149 (262)
T 1zem_A           84 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK--------------  149 (262)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS--------------
T ss_pred             CCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc--------------
Confidence            899999999965 21    122345678899999999999888754    355 999999987654              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                        +......|+.+|.+.+.+.+.++.+   +++++++++||.+..+.
T Consensus       150 --~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~  194 (262)
T 1zem_A          150 --GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGF  194 (262)
T ss_dssp             --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSH
T ss_pred             --CCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcch
Confidence              2233467999999999999988765   48999999999887653

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.89  E-value=2.4e-22  Score=161.17  Aligned_cols=199  Identities=12%  Similarity=0.040  Sum_probs=135.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      .|+ |+++||||+|+||+++++.|+++|++ |++++|+.....+..++.....++.++.+|+++.+            +.
T Consensus        19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           19 HMS-STLFITGATSGFGEACARRFAEAGWS-LVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             --C-CEEEESSTTTSSHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             CcC-cEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            355 89999999999999999999999998 99988864332222222111146889999999977            35


Q ss_pred             CcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHH----HhC-C-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           97 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      ++|++||+||....     ....++++..+++|+.++.++++++.    +.+ . +||++||...+.             
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~-------------  163 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW-------------  163 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS-------------
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc-------------
Confidence            78999999997532     12234567789999999888877663    333 4 999999987553             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                         +......|+.+|.+.+.+.+.++.+   .++++++++||.+.++....    ....   .  .........    ..
T Consensus       164 ---~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~----~~~~---~--~~~~~~~~~----~~  227 (272)
T 2nwq_A          164 ---PYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLV----RFGG---D--QARYDKTYA----GA  227 (272)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC---------------------------------CC
T ss_pred             ---CCCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhc----cccc---c--hHHHHHhhc----cC
Confidence               3334467999999999999998865   47999999999998864211    0000   0  000000000    11


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .++..+|+|+++++++
T Consensus       228 ~~~~pedvA~~v~~l~  243 (272)
T 2nwq_A          228 HPIQPEDIAETIFWIM  243 (272)
T ss_dssp             CCBCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            2468999999999876

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.89  E-value=6e-22  Score=156.69  Aligned_cols=204  Identities=18%  Similarity=0.165  Sum_probs=146.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc-cCCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~dl~~~~------------~   95 (259)
                      ++++|+++||||++.||+++++.|+++|.. |++.+|+.+... ..+.. ....++.++.+|+++++            +
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~-Vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAI-PVVFARHAPDGA-FLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF   81 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCCHH-HHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCcccHH-HHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            467899999999999999999999999998 888888655422 22211 11357889999999987            6


Q ss_pred             CCcCEEEEccCCCCcc---ccccChhHHHHHhhhhHHHHHHHHH----HhCCeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           96 IEVDQIYHLACPASPI---FYKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      .++|++||+||.....   ...++++..+++|+.++..+.+++.    +.+.+||++||...+.                
T Consensus        82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~----------------  145 (258)
T 4gkb_A           82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT----------------  145 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH----------------
T ss_pred             CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc----------------
Confidence            7899999999965432   2334577889999999999888764    3344999999987554                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCc--cHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDG--RVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                      +......|+.+|.+.+.+.+.++.+   +||++..+.||.+..|.......  ..............|+   +     ..
T Consensus       146 ~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---g-----~R  217 (258)
T 4gkb_A          146 GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL---G-----RR  217 (258)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT---T-----TS
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC---C-----CC
Confidence            3334467999999999999999876   48999999999998765321100  0011122223333221   1     12


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+|.++++++
T Consensus       218 ~g~peeiA~~v~fLa  232 (258)
T 4gkb_A          218 FTTPDEIADTAVFLL  232 (258)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHh
Confidence            557899999999886

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.89  E-value=2e-22  Score=165.16  Aligned_cols=167  Identities=14%  Similarity=0.100  Sum_probs=128.4

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC--------cchhhhc-----cCCCceeEeecccCcc
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--------KDNLRKW-----IGHPRFELIRHDVTEP   93 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--------~~~~~~~-----~~~~~~~~~~~dl~~~   93 (259)
                      +..+++|+++||||+|+||+++++.|+++|++ |++++|+....        .+.++..     ....++.++.+|+++.
T Consensus        41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~  119 (317)
T 3oec_A           41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGAD-IVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDL  119 (317)
T ss_dssp             -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCe-EEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence            44567899999999999999999999999998 88887652211        1111111     1135788999999998


Q ss_pred             c------------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceee
Q 025022           94 L------------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVY  151 (259)
Q Consensus        94 ~------------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~  151 (259)
                      +            +.++|++||+||.....    ...++++..+++|+.++..+++++.+    .+ . +||++||...+
T Consensus       120 ~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~  199 (317)
T 3oec_A          120 ASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGL  199 (317)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGS
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhc
Confidence            7            45899999999976532    23345678899999999999888743    33 3 89999998765


Q ss_pred             cCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 025022          152 GDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPR  210 (259)
Q Consensus       152 ~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~  210 (259)
                      .                +......|+.+|.+.+.+.+.++.+.   |++++.++||.+.++.
T Consensus       200 ~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~  245 (317)
T 3oec_A          200 R----------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEM  245 (317)
T ss_dssp             S----------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHH
T ss_pred             C----------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCcc
Confidence            4                33445689999999999999998774   8999999999998864

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.89  E-value=1.1e-21  Score=153.21  Aligned_cols=199  Identities=14%  Similarity=0.073  Sum_probs=146.8

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccCCCceeEeecccCccc-------cCCcC
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPL-------LIEVD   99 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d   99 (259)
                      +++++|+++||||++.||+++++.|.++|.+ |++.+|+.... .+.++..  ..++..+.+|+++++       ..++|
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~-Vvi~~r~~~~~~~~~~~~~--g~~~~~~~~Dv~d~~~v~~~~~~g~iD   81 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAE-VVCAARRAPDETLDIIAKD--GGNASALLIDFADPLAAKDSFTDAGFD   81 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHT--TCCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCE-EEEEeCCcHHHHHHHHHHh--CCcEEEEEccCCCHHHHHHHHHhCCCC
Confidence            4678999999999999999999999999999 88888864311 1122221  357888999999987       56799


Q ss_pred             EEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhC-C-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022          100 QIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus       100 ~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      ++|||||.....    ...++++..+++|+.++..+.+++.    +.+ . +||++||.....                +
T Consensus        82 iLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~----------------g  145 (247)
T 4hp8_A           82 ILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ----------------G  145 (247)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------C
T ss_pred             EEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC----------------C
Confidence            999999976542    2345688899999999999988653    344 3 999999986543                2


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCceeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVV--SNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      ......|..||.....+.+.++.+.   ||++..|.||.+-.|...    ...  ....+.+....|+..         +
T Consensus       146 ~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~----~~~~~~~~~~~~~~~~PlgR---------~  212 (247)
T 4hp8_A          146 GIRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTE----ALRADAARNKAILERIPAGR---------W  212 (247)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGH----HHHTSHHHHHHHHTTCTTSS---------C
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchh----hcccCHHHHHHHHhCCCCCC---------C
Confidence            2334679999999999999998764   799999999998776421    011  122233344444333         4


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ...+|+|.++++|+
T Consensus       213 g~peeiA~~v~fLa  226 (247)
T 4hp8_A          213 GHSEDIAGAAVFLS  226 (247)
T ss_dssp             BCTHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHh
Confidence            46799999999986

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.89  E-value=2.3e-22  Score=159.90  Aligned_cols=201  Identities=14%  Similarity=0.077  Sum_probs=147.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++.  ..+...+.+|+++++            +++
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga~-V~i~~r~~~~l~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~  103 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGAR-VFITGRRKDVLDAAIAEI--GGGAVGIQADSANLAELDRLYEKVKAEAGR  103 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHc--CCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999999999999999999 999998654433333333  246788999999988            678


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      +|++||+||.....    ...++++..+++|+.++..+++++.+.=   .++|++||.....                +.
T Consensus       104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~----------------~~  167 (273)
T 4fgs_A          104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST----------------GT  167 (273)
T ss_dssp             EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS----------------CC
T ss_pred             CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc----------------CC
Confidence            99999999965432    2345678899999999999999886532   2899999986543                33


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC---ccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDD---GRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      .....|+.+|.+...+.+.++.+.   ||++..|.||.+..|......   ......+.+.+....|+..         +
T Consensus       168 ~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~PlgR---------~  238 (273)
T 4fgs_A          168 PAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGR---------V  238 (273)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTSS---------C
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCCC---------C
Confidence            344679999999999999998775   799999999999876532211   0011223333443344332         4


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ...+|+|.++++|+
T Consensus       239 g~peeiA~~v~FLa  252 (273)
T 4fgs_A          239 GRAEEVAAAALFLA  252 (273)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHh
Confidence            47799999999986

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.89  E-value=1.4e-22  Score=166.45  Aligned_cols=198  Identities=14%  Similarity=0.022  Sum_probs=140.9

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC----------CCCcchhhhcc-CCCceeEeecccCccc-
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF----------TGSKDNLRKWI-GHPRFELIRHDVTEPL-   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~----------~~~~~~~~~~~-~~~~~~~~~~dl~~~~-   94 (259)
                      +..+++++++||||+|+||+++++.|+++|++ |++++|+.          .......++.. ...++.++.+|+++.+ 
T Consensus        22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~  100 (322)
T 3qlj_A           22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQ  100 (322)
T ss_dssp             CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHH
T ss_pred             hcccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHH
Confidence            44567899999999999999999999999998 88888752          11111111111 1246888999999987 


Q ss_pred             -----------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh-----------CCeEEEEecc
Q 025022           95 -----------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV-----------GARILLTSTS  148 (259)
Q Consensus        95 -----------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~-----------~~~~i~~Ss~  148 (259)
                                 +.++|++||+||.....    ...++++..+++|+.++..+++++...           +.+||++||.
T Consensus       101 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~  180 (322)
T 3qlj_A          101 AAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSG  180 (322)
T ss_dssp             HHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCH
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCH
Confidence                       35899999999976532    233456788999999999998877432           1389999998


Q ss_pred             eeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHH
Q 025022          149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQ  225 (259)
Q Consensus       149 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~  225 (259)
                      ..+.                +......|+.+|.+.+.+.+.++.+   ++++++.++|| +..+..........      
T Consensus       181 ~~~~----------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~------  237 (322)
T 3qlj_A          181 AGLQ----------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMM------  237 (322)
T ss_dssp             HHHH----------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC--------
T ss_pred             HHcc----------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhh------
Confidence            7654                3334467999999999999999877   58999999999 65544221111000      


Q ss_pred             HHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          226 AIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                                ........++.++|+|+++++++
T Consensus       238 ----------~~~~~~~~~~~pedva~~v~~L~  260 (322)
T 3qlj_A          238 ----------ATQDQDFDAMAPENVSPLVVWLG  260 (322)
T ss_dssp             ----------------CCTTCGGGTHHHHHHHT
T ss_pred             ----------hccccccCCCCHHHHHHHHHHHh
Confidence                      01112234568999999998876

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.89  E-value=8.2e-23  Score=164.12  Aligned_cols=180  Identities=17%  Similarity=0.026  Sum_probs=129.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHh-cCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++++||||+|+||+++++.|++ +|++ |+++.|+........+.+. ...++.++.+|+++.+            +
T Consensus         2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGD-VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSE-EEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhcCCe-EEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            3578999999999999999999999 8998 9999886433222222111 1246889999999976            2


Q ss_pred             CCcCEEEEccCCCCcccc----ccChhHHHHHhhhhHHHHHHHHHHhC--C-eEEEEecceeecC-CC----------CC
Q 025022           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTSTSEVYGD-PL----------VH  157 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~~Ss~~~~~~-~~----------~~  157 (259)
                      .++|+|||+||.......    ..+.+..+++|+.++.++++++.+..  . +||++||...+.. ..          ..
T Consensus        81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~  160 (276)
T 1wma_A           81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE  160 (276)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred             CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccc
Confidence            489999999997643221    24467789999999999999998763  2 9999999866531 00          01


Q ss_pred             CCCCCCcC--------------CCCCCCCCCchHHHHHHHHHHHHHHHHH-------hCCcEEEEEeccccCCC
Q 025022          158 PQDESYWG--------------NVNPIGVRSCYDEGKRVAETLMFDYHRQ-------HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       158 ~~~e~~~~--------------~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-------~~~~~~~lr~~~v~g~~  210 (259)
                      .++|+.+.              ...+..|...|+.+|.+.+.+++.++.+       .++++++++||++.++.
T Consensus       161 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~  234 (276)
T 1wma_A          161 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDM  234 (276)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTT
T ss_pred             ccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCc
Confidence            12221100              0001224478999999999999988765       48999999999998865

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.89  E-value=8.6e-23  Score=162.10  Aligned_cols=192  Identities=16%  Similarity=0.057  Sum_probs=139.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeeccc--Cccc----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDV--TEPL----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl--~~~~----------   94 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+...  ...++.++.+|+  ++.+          
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGAT-VILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH
Confidence            367899999999999999999999999998 9999886443222222111  123678899999  6655          


Q ss_pred             --cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                        +.++|++||+||....     ....++++..+++|+.++..+++++.    +.+. +||++||...+.          
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------  157 (252)
T 3f1l_A           88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQ----------  157 (252)
T ss_dssp             HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTS----------
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhcc----------
Confidence              4689999999997432     12234457889999999999999873    3444 999999986553          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                            +......|+.+|.+.+.+.+.++.+.+  +++..+.||.+..+.            .........         
T Consensus       158 ------~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~------------~~~~~~~~~---------  210 (252)
T 3f1l_A          158 ------GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM------------RASAFPTED---------  210 (252)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH------------HHHHCTTCC---------
T ss_pred             ------CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch------------hhhhCCccc---------
Confidence                  334456899999999999999998764  888888988776632            111111111         


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+..++|+|+++++++
T Consensus       211 ~~~~~~p~dva~~~~~L~  228 (252)
T 3f1l_A          211 PQKLKTPADIMPLYLWLM  228 (252)
T ss_dssp             GGGSBCTGGGHHHHHHHH
T ss_pred             hhccCCHHHHHHHHHHHc
Confidence            123568899999998875

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.89  E-value=3.7e-22  Score=163.82  Aligned_cols=165  Identities=19%  Similarity=0.140  Sum_probs=124.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC-CCcchhhhc---c--CCCceeEeecccCccc---------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKW---I--GHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~---~--~~~~~~~~~~dl~~~~---------   94 (259)
                      |++|+++||||+|+||+++++.|+++|++ |++..|+.. ...+.++..   .  ...++.++.+|+++.+         
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~-V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~   81 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHR-VYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQI   81 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence            56789999999999999999999999998 888887532 222222211   1  1257889999999987         


Q ss_pred             ---cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                         +.++|++||+||.....    ...++.+..+++|+.++.++++++    ++.+. +||++||...+..         
T Consensus        82 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~---------  152 (324)
T 3u9l_A           82 IGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGG---------  152 (324)
T ss_dssp             HHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC---------
T ss_pred             HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccC---------
Confidence               35899999999965431    123456778999999999999988    55666 9999999876532         


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                            .......|+.||.+.|.+.+.++.+   +|+++++++||.+.++.
T Consensus       153 ------~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~  197 (324)
T 3u9l_A          153 ------TPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT  197 (324)
T ss_dssp             ------CCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred             ------CCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence                  2233467999999999999999877   58999999999998654

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.88  E-value=8.3e-22  Score=157.75  Aligned_cols=204  Identities=10%  Similarity=-0.003  Sum_probs=148.9

Q ss_pred             ccccCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccC--CCceeEeecccCccc-------
Q 025022           27 KFFQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG--HPRFELIRHDVTEPL-------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~dl~~~~-------   94 (259)
                      ..++++++++||||+  |+||.+++++|+++|++ |+++.|+.... .+..+++..  ..++.++.+|+++.+       
T Consensus        15 ~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~   93 (267)
T 3gdg_A           15 QLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAA-VAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVK   93 (267)
T ss_dssp             HHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCE-EEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHH
T ss_pred             ccCcCCCEEEEECCCCCCChHHHHHHHHHHCCCe-EEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHH
Confidence            445778999999999  89999999999999998 88888765543 222222211  357889999999987       


Q ss_pred             -----cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCC
Q 025022           95 -----LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 -----~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                           +.++|++||+||......    ..++++..+++|+.++.++++++    ++.+. +||++||...+...      
T Consensus        94 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------  167 (267)
T 3gdg_A           94 DVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN------  167 (267)
T ss_dssp             HHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC------
Confidence                 468999999999765321    33456789999999999998887    44555 99999997654320      


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                              ...+...|+.+|.+.+.+.+.++.+.+  +++..+.||.+..+....    .............+       
T Consensus       168 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~----~~~~~~~~~~~~~~-------  228 (267)
T 3gdg_A          168 --------FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDF----VPKETQQLWHSMIP-------  228 (267)
T ss_dssp             --------SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGG----SCHHHHHHHHTTST-------
T ss_pred             --------CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhh----CCHHHHHHHHhcCC-------
Confidence                    123456899999999999999988764  789999999998765321    11222222222222       


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                        ...+.+++|+|+++++++
T Consensus       229 --~~r~~~~~dva~~~~~l~  246 (267)
T 3gdg_A          229 --MGRDGLAKELKGAYVYFA  246 (267)
T ss_dssp             --TSSCEETHHHHHHHHHHH
T ss_pred             --CCCCcCHHHHHhHhheee
Confidence              234668899999998875

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.88  E-value=1.6e-22  Score=160.93  Aligned_cols=201  Identities=11%  Similarity=0.016  Sum_probs=130.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------c-CCcCEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------L-IEVDQIY  102 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~-~~~d~vi  102 (259)
                      +|+++||||+|+||+++++.|+++|++ |++++|+......           . +.+|+++.+        . .++|++|
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r~~~~~~~-----------~-~~~Dl~~~~~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGHQ-IVGIDIRDAEVIA-----------D-LSTAEGRKQAIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSSEEC-----------C-TTSHHHHHHHHHHHHTTCTTCCSEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCchhhcc-----------c-cccCCCCHHHHHHHHHHhCCCCCEEE
Confidence            368999999999999999999999998 9999886533211           1 567887765        3 5789999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCC-----CcC-------
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDES-----YWG-------  165 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~-----~~~-------  165 (259)
                      |+||....   ...++..+++|+.++.++++++.+    .+. +||++||...+......+..+.     ++.       
T Consensus        68 ~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (257)
T 1fjh_A           68 LCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVE  144 (257)
T ss_dssp             ECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHH
T ss_pred             ECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhh
Confidence            99997541   234789999999999999988853    444 9999999987732111110000     000       


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                      ...+..+...|+.+|.+.+.+.+.++.+   .++++++++||.+.++.....   ............     +  .....
T Consensus       145 ~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~~-----~--~~~~~  214 (257)
T 1fjh_A          145 HAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG---LQDPRYGESIAK-----F--VPPMG  214 (257)
T ss_dssp             TCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------------C--CCSTT
T ss_pred             cccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhh---ccchhHHHHHHh-----c--ccccC
Confidence            0012234568999999999999988766   589999999999988753211   000000011100     0  01112


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+++++|+|+++++++
T Consensus       215 ~~~~~~dvA~~~~~l~  230 (257)
T 1fjh_A          215 RRAEPSEMASVIAFLM  230 (257)
T ss_dssp             SCCCTHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            4789999999998875

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.88  E-value=9e-23  Score=162.85  Aligned_cols=202  Identities=13%  Similarity=0.063  Sum_probs=138.1

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC--cchhhhcc--CCCceeEeecccCccc---------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNLRKWI--GHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~~~~--~~~~~~~~~~dl~~~~---------   94 (259)
                      .++++++++||||+|+||+++++.|+++|++ |+++.|.....  .+.+...+  ...++.++.+|+++.+         
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~   85 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVN-LVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFA   85 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCE-EEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            3467899999999999999999999999998 88877643221  11111111  1357889999999987         


Q ss_pred             ---cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHh--CC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 ---LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                         +.++|++||+||......    ..++++..+++|+.++..+++++.+.  +. ++|++||...+.            
T Consensus        86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~------------  153 (262)
T 3ksu_A           86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA------------  153 (262)
T ss_dssp             HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH------------
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc------------
Confidence               358999999999764322    23456778899999999999999875  33 999999987654            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          +......|+.+|.+.+.+.+.++.+.   ++++..++||.+..+......            ..............
T Consensus       154 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~------------~~~~~~~~~~~~~~  217 (262)
T 3ksu_A          154 ----YTGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQE------------TKESTAFHKSQAMG  217 (262)
T ss_dssp             ----HHCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC------------------------CC
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccC------------chHHHHHHHhcCcc
Confidence                22234569999999999999998875   799999999988764311000            00000111111223


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+..++|+|+++++++
T Consensus       218 ~r~~~pedvA~~v~~L~  234 (262)
T 3ksu_A          218 NQLTKIEDIAPIIKFLT  234 (262)
T ss_dssp             CCSCCGGGTHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHc
Confidence            34678999999999875

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.88  E-value=7.8e-22  Score=162.27  Aligned_cols=198  Identities=13%  Similarity=0.019  Sum_probs=142.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc-CCCCCCcchhhhcc--CCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||+|+||+++++.|+++|++ |++++ |+.....+..+.+.  ...++.++.+|+++.+            
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~-Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~  122 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP  122 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccc
Confidence            56789999999999999999999999998 88888 75432222111110  1246888999998753            


Q ss_pred             -----------------cCCcCEEEEccCCCCccc----c--------------ccChhHHHHHhhhhHHHHHHHHHH--
Q 025022           95 -----------------LIEVDQIYHLACPASPIF----Y--------------KYNPVKTIKTNVIGTLNMLGLAKR--  137 (259)
Q Consensus        95 -----------------~~~~d~vi~~a~~~~~~~----~--------------~~~~~~~~~~n~~~~~~l~~~~~~--  137 (259)
                                       +.++|++||+||......    .              ..+++..+++|+.++..+++++.+  
T Consensus       123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m  202 (328)
T 2qhx_A          123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV  202 (328)
T ss_dssp             BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             248999999999754311    1              334567899999999999887753  


Q ss_pred             --hC------C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEecc
Q 025022          138 --VG------A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFN  205 (259)
Q Consensus       138 --~~------~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~  205 (259)
                        .+      . +||++||...+.                +..+...|+.+|.+.+.+.+.++.+.   ++++++++||+
T Consensus       203 ~~~~~~~~~~~g~IV~isS~~~~~----------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~  266 (328)
T 2qhx_A          203 AGTPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGL  266 (328)
T ss_dssp             HHSCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESS
T ss_pred             HhcCCcCCCCCcEEEEECchhhcc----------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCc
Confidence              34      5 999999986553                33445689999999999999998764   89999999999


Q ss_pred             ccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          206 TYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       206 v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +.++. ..    . +..........++.        ..+..++|+|+++++++
T Consensus       267 v~T~~-~~----~-~~~~~~~~~~~p~~--------~r~~~pedvA~~v~~l~  305 (328)
T 2qhx_A          267 SVLVD-DM----P-PAVWEGHRSKVPLY--------QRDSSAAEVSDVVIFLC  305 (328)
T ss_dssp             BSCCC-CS----C-HHHHHHHHTTCTTT--------TSCBCHHHHHHHHHHHH
T ss_pred             ccCCc-cc----c-HHHHHHHHhhCCCC--------CCCCCHHHHHHHHHHHh
Confidence            99876 21    1 22333333222211        02568999999999876

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.88  E-value=1.3e-21  Score=158.09  Aligned_cols=194  Identities=13%  Similarity=0.005  Sum_probs=141.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc---hh---hhcc--CCCceeEeecccCccc-------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NL---RKWI--GHPRFELIRHDVTEPL-------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~---~~~~--~~~~~~~~~~dl~~~~-------   94 (259)
                      +++++++||||+|+||++++++|+++|++ |++++|+......   .+   ...+  ...++.++.+|+++.+       
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   85 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGAN-VALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVA   85 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTCE-EEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            67899999999999999999999999998 9999987653221   11   1111  1347889999999987       


Q ss_pred             -----cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCCCCCCCC
Q 025022           95 -----LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 -----~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                           +.++|++||+||.....    ...++++..+++|+.++..+++++.+.    +. +||++||...+..       
T Consensus        86 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~-------  158 (285)
T 3sc4_A           86 KTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP-------  158 (285)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG-------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC-------
Confidence                 45899999999976532    223446778889999999999988654    44 9999999765431       


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (259)
                              ...+...|+.+|.+.+.+.+.++.+   ++++++.++||++....           +.........      
T Consensus       159 --------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~-----------~~~~~~~~~~------  213 (285)
T 3sc4_A          159 --------KWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA-----------AVQNLLGGDE------  213 (285)
T ss_dssp             --------GGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCH-----------HHHHHHTSCC------
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccH-----------HHHhhccccc------
Confidence                    1133477999999999999999876   58999999998543321           1222222111      


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                        ....+...+|+|+++++++
T Consensus       214 --~~~r~~~pedvA~~~~~l~  232 (285)
T 3sc4_A          214 --AMARSRKPEVYADAAYVVL  232 (285)
T ss_dssp             --CCTTCBCTHHHHHHHHHHH
T ss_pred             --cccCCCCHHHHHHHHHHHh
Confidence              1123568899999998876

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.88  E-value=2.8e-22  Score=161.70  Aligned_cols=201  Identities=19%  Similarity=0.139  Sum_probs=145.6

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----------c
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------L   95 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----------~   95 (259)
                      ..++++++++||||+|+||++++++|+++|++ |++++|+.....+..+..  ..++.++.+|+++.+           +
T Consensus        25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~-Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (281)
T 3ppi_A           25 IKQFEGASAIVSGGAGGLGEATVRRLHADGLG-VVIADLAAEKGKALADEL--GNRAEFVSTNVTSEDSVLAAIEAANQL  101 (281)
T ss_dssp             CGGGTTEEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHTTS
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            34567889999999999999999999999998 999988644333222222  357899999999987           3


Q ss_pred             CCcCEEEEc-cCCCCcc---------ccccChhHHHHHhhhhHHHHHHHHHH----------hCC-eEEEEecceeecCC
Q 025022           96 IEVDQIYHL-ACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKR----------VGA-RILLTSTSEVYGDP  154 (259)
Q Consensus        96 ~~~d~vi~~-a~~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~----------~~~-~~i~~Ss~~~~~~~  154 (259)
                      .++|++||+ |+.....         ....+++..+++|+.++.++++++..          .+. +||++||...+.  
T Consensus       102 ~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--  179 (281)
T 3ppi_A          102 GRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE--  179 (281)
T ss_dssp             SEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS--
T ss_pred             CCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC--
Confidence            579999999 5443221         11223678999999999999988752          223 999999987664  


Q ss_pred             CCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCC
Q 025022          155 LVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEP  231 (259)
Q Consensus       155 ~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~  231 (259)
                                    +......|+.+|.+.+.+.+.++.+.   +++++.++||.+..+....    .............+
T Consensus       180 --------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~----~~~~~~~~~~~~~~  241 (281)
T 3ppi_A          180 --------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMES----VGEEALAKFAANIP  241 (281)
T ss_dssp             --------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----TCHHHHHHHHHTCC
T ss_pred             --------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhc----ccHHHHHHHHhcCC
Confidence                          33455789999999999999988764   7999999999998754221    11222223333322


Q ss_pred             eEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          232 LTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       232 ~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .        ...+++++|+|+++++++
T Consensus       242 ~--------~~~~~~pedvA~~v~~l~  260 (281)
T 3ppi_A          242 F--------PKRLGTPDEFADAAAFLL  260 (281)
T ss_dssp             S--------SSSCBCHHHHHHHHHHHH
T ss_pred             C--------CCCCCCHHHHHHHHHHHH
Confidence            1        134679999999998875

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.88  E-value=1.3e-22  Score=160.64  Aligned_cols=194  Identities=19%  Similarity=0.111  Sum_probs=139.4

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeeccc--Cccc--------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDV--TEPL--------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl--~~~~--------   94 (259)
                      +..+++++++||||+|+||+++++.|+++|++ |++++|+.....+..+...  ...+..++.+|+  ++.+        
T Consensus         9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~   87 (247)
T 3i1j_A            9 PELLKGRVILVTGAARGIGAAAARAYAAHGAS-VVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAAR   87 (247)
T ss_dssp             TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred             CccCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHH
Confidence            34467899999999999999999999999998 9999986443322222111  124566777777  6554        


Q ss_pred             ----cCCcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCC
Q 025022           95 ----LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 ----~~~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                          +.++|++||+||....     ....++++..+++|+.++..+++++.    +.+. +||++||...+.        
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~--------  159 (247)
T 3i1j_A           88 VEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK--------  159 (247)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS--------
T ss_pred             HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC--------
Confidence                4589999999997532     11234567889999999999999884    3444 999999986543        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH----GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (259)
                              +..+...|+.+|.+.+.+.+.++.+.    ++++..++||.+..+.            .........     
T Consensus       160 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~------------~~~~~~~~~-----  214 (247)
T 3i1j_A          160 --------GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM------------RAQAYPDEN-----  214 (247)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH------------HHHHSTTSC-----
T ss_pred             --------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc------------chhcccccC-----
Confidence                    33445689999999999999988763    6899999998776632            111111111     


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ...+...+|+|+++++++
T Consensus       215 ----~~~~~~p~dva~~~~~l~  232 (247)
T 3i1j_A          215 ----PLNNPAPEDIMPVYLYLM  232 (247)
T ss_dssp             ----GGGSCCGGGGTHHHHHHH
T ss_pred             ----ccCCCCHHHHHHHHHHHh
Confidence                123567899999998876

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.88  E-value=2.2e-22  Score=162.67  Aligned_cols=164  Identities=12%  Similarity=0.102  Sum_probs=124.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc--cCCCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~dl~~~~------------   94 (259)
                      .+++++++||||+|+||+++++.|+++|++ |++++|+...........  ....++.++.+|+++.+            
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL  103 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999998 999988643322211111  11236889999999876            


Q ss_pred             cCCcCEEEEc-cCCCCccc---cccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCcCC
Q 025022           95 LIEVDQIYHL-ACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        95 ~~~~d~vi~~-a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ..++|++||+ ||......   ...+.+..+++|+.++.++++++.+    .+.+||++||...+.              
T Consensus       104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~--------------  169 (286)
T 1xu9_A          104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV--------------  169 (286)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS--------------
T ss_pred             cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc--------------
Confidence            3589999999 56543211   2234567899999999999887754    334999999987554              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGP  209 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~lr~~~v~g~  209 (259)
                        +..+...|+.+|.+.+.+++.++.+.     ++++++++||.+.++
T Consensus       170 --~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~  215 (286)
T 1xu9_A          170 --AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE  215 (286)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH
T ss_pred             --CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCCh
Confidence              33345689999999999999887664     799999999988764

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.88  E-value=2.6e-22  Score=158.28  Aligned_cols=182  Identities=16%  Similarity=0.054  Sum_probs=136.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c--
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L--   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~--   95 (259)
                      .++|+++||||+|+||++++++|+++|++ |++++|+.....         ....++.+|+++.+            +  
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   74 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENEEA---------SASVIVKMTDSFTEQADQVTAEVGKLLGD   74 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCCTTS---------SEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCE-EEEEeCChhhcc---------CCcEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999999999998 999988654322         13567889999876            2  


Q ss_pred             CCcCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           96 IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      .++|++||+||.....     ...++++..+++|+.++..+++++.+.   +.+||++||...+.               
T Consensus        75 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------  139 (241)
T 1dhr_A           75 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD---------------  139 (241)
T ss_dssp             CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS---------------
T ss_pred             CCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc---------------
Confidence            5899999999975421     223446778999999999999998764   23999999987664               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                       +..+...|+.+|.+.+.+.+.++.+.     ++++++++||.+-.+.            ........         ...
T Consensus       140 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~------------~~~~~~~~---------~~~  197 (241)
T 1dhr_A          140 -GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM------------NRKSMPEA---------DFS  197 (241)
T ss_dssp             -CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH------------HHHHSTTS---------CGG
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc------------ccccCcch---------hhc
Confidence             33445689999999999999988653     5999999999886642            11111111         112


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .++..+|+|+++++++
T Consensus       198 ~~~~~~~vA~~v~~l~  213 (241)
T 1dhr_A          198 SWTPLEFLVETFHDWI  213 (241)
T ss_dssp             GSEEHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHh
Confidence            3567899999998775

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.88  E-value=7.3e-22  Score=159.16  Aligned_cols=201  Identities=14%  Similarity=0.056  Sum_probs=142.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||+|+||+++++.|+++|++ |++++|+.....+..+. . ..++.++.+|+++.+            +.+
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGAR-VAVLDKSAERLRELEVA-H-GGNAVGVVGDVRSLQDQKRAAERCLAAFGK   79 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHH-T-BTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCHHHHHHHHHH-c-CCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            56899999999999999999999999998 99998864332222222 1 257889999999977            468


Q ss_pred             cCEEEEccCCCCcccc---------ccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCc
Q 025022           98 VDQIYHLACPASPIFY---------KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~---------~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +|++||+||.......         ..+++..+++|+.++..+++++.+    .+.++|++||...+.            
T Consensus        80 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------  147 (281)
T 3zv4_A           80 IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY------------  147 (281)
T ss_dssp             CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS------------
T ss_pred             CCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc------------
Confidence            9999999997532110         123567889999999999988753    334999999986553            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCCccHHH------HHHHHHHcCCCeEEec
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGPRMNIDDGRVVS------NFIAQAIRGEPLTVQA  236 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~lr~~~v~g~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  236 (259)
                          +......|+.+|.+.+.+.+.++.+.+  +++..+.||.+..+...........      ..........+     
T Consensus       148 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----  218 (281)
T 3zv4_A          148 ----PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLP-----  218 (281)
T ss_dssp             ----SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCT-----
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCC-----
Confidence                334456799999999999999987753  9999999999988643211100000      01122222222     


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ...+..++|+|+++++++
T Consensus       219 ----~~r~~~pedvA~~v~fL~  236 (281)
T 3zv4_A          219 ----IGRMPALEEYTGAYVFFA  236 (281)
T ss_dssp             ----TSSCCCGGGGSHHHHHHH
T ss_pred             ----CCCCCCHHHHHHHHHHhh
Confidence                123568899999998876

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.88  E-value=2.8e-21  Score=153.60  Aligned_cols=203  Identities=12%  Similarity=0.001  Sum_probs=146.6

Q ss_pred             cccCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh--ccCCCceeEeecccCccc---------
Q 025022           28 FFQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK--WIGHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~dl~~~~---------   94 (259)
                      .++++|+++||||+|  .||.++++.|.++|++ |++.+|+.....+..+.  .....++..+.+|+++++         
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~-Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   80 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAK-LVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQI   80 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHH
Confidence            457899999999887  8999999999999998 99998865433222111  122357889999999987         


Q ss_pred             ---cCCcCEEEEccCCCCccc--------cccChhHHHHHhhhhHHHHHHHHHHhC--C-eEEEEecceeecCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                         +.++|++||+||......        ..+++...+++|..++..+.+.+...-  . +||++||.....        
T Consensus        81 ~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~--------  152 (256)
T 4fs3_A           81 GKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF--------  152 (256)
T ss_dssp             HHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS--------
T ss_pred             HHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc--------
Confidence               678999999999654311        112344567889988888888776542  2 999999976433        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecC
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (259)
                              +......|+.+|.+.+.+.+.++.+   +||++..|.||.+-.+......  ......+.+....|+..   
T Consensus       153 --------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~--~~~~~~~~~~~~~Pl~R---  219 (256)
T 4fs3_A          153 --------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVG--GFNTILKEIKERAPLKR---  219 (256)
T ss_dssp             --------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCT--THHHHHHHHHHHSTTSS---
T ss_pred             --------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhcc--CCHHHHHHHHhcCCCCC---
Confidence                    3344568999999999999999876   4799999999998776532211  22344444444444332   


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                            +...+|+|+++++++
T Consensus       220 ------~g~peevA~~v~fL~  234 (256)
T 4fs3_A          220 ------NVDQVEVGKTAAYLL  234 (256)
T ss_dssp             ------CCCHHHHHHHHHHHH
T ss_pred             ------CcCHHHHHHHHHHHh
Confidence                  347899999999886

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.88  E-value=4.9e-21  Score=151.92  Aligned_cols=157  Identities=15%  Similarity=0.102  Sum_probs=123.2

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~   95 (259)
                      .++++|+++||||++.||+++++.|+++|++ |++.+|+.....         .....+.+|+++++            +
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQ-VLTTARARPEGL---------PEELFVEADLTTKEGCAIVAEATRQRL   76 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCE-EEEEESSCCTTS---------CTTTEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCE-EEEEECCchhCC---------CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4578999999999999999999999999999 988888643211         23347889999988            6


Q ss_pred             CCcCEEEEccCCCCc------cccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           96 IEVDQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      .++|++||+||....      +...++++..+++|+.++..+.+++    ++.+. +||++||......           
T Consensus        77 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~-----------  145 (261)
T 4h15_A           77 GGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLP-----------  145 (261)
T ss_dssp             SSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC-----------
T ss_pred             CCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccC-----------
Confidence            789999999986432      1223457789999999998888766    34555 9999999764431           


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                          .+.....|+.+|.+.+.+.+.++.+   +||++..|.||.+-.|
T Consensus       146 ----~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~  189 (261)
T 4h15_A          146 ----LPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETE  189 (261)
T ss_dssp             ----CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCH
T ss_pred             ----CCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCc
Confidence                1223467999999999999999876   4899999999988765

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.88  E-value=2e-21  Score=157.37  Aligned_cols=201  Identities=12%  Similarity=0.003  Sum_probs=141.2

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc-CCCCCCcchhhhcc--CCCceeEeecccCccc---------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWI--GHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~---------   94 (259)
                      +..+++|+++||||+|+||+++++.|+++|++ |++++ |+........+.+.  ...++.++.+|+++.+         
T Consensus         4 m~~l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   82 (291)
T 1e7w_A            4 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADG   82 (291)
T ss_dssp             ----CCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCccccccccccc
Confidence            34577899999999999999999999999998 88888 75432222111111  1246889999998753         


Q ss_pred             --------------------cCCcCEEEEccCCCCcc----cc--------------ccChhHHHHHhhhhHHHHHHHHH
Q 025022           95 --------------------LIEVDQIYHLACPASPI----FY--------------KYNPVKTIKTNVIGTLNMLGLAK  136 (259)
Q Consensus        95 --------------------~~~~d~vi~~a~~~~~~----~~--------------~~~~~~~~~~n~~~~~~l~~~~~  136 (259)
                                          +.++|++||+||.....    ..              ..+++..+++|+.++..+++++.
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~  162 (291)
T 1e7w_A           83 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA  162 (291)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence                                24899999999975431    11              33456789999999999988875


Q ss_pred             H----hC------C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEE
Q 025022          137 R----VG------A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIAR  202 (259)
Q Consensus       137 ~----~~------~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr  202 (259)
                      +    .+      . +||++||...+.                +......|+.+|.+.+.+.+.++.+   ++++++.++
T Consensus       163 ~~m~~~~~~~~~~~g~Iv~isS~~~~~----------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~  226 (291)
T 1e7w_A          163 HRVAGTPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVG  226 (291)
T ss_dssp             HHHHTSCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred             HHHHhcCCCCCCCCcEEEEEechhhcC----------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEe
Confidence            3    34      4 999999987554                3344568999999999999998876   479999999


Q ss_pred             eccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          203 IFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       203 ~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ||.+..+. . ..    +..........++.        ..+...+|+|+++++++
T Consensus       227 PG~v~T~~-~-~~----~~~~~~~~~~~p~~--------~r~~~pedvA~~v~~l~  268 (291)
T 1e7w_A          227 PGLSVLVD-D-MP----PAVWEGHRSKVPLY--------QRDSSAAEVSDVVIFLC  268 (291)
T ss_dssp             ESSBCCGG-G-SC----HHHHHHHHTTCTTT--------TSCBCHHHHHHHHHHHH
T ss_pred             eCCccCCc-c-CC----HHHHHHHHhhCCCC--------CCCCCHHHHHHHHHHHh
Confidence            99987764 2 11    22222222222211        02568899999999876

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.88  E-value=1.2e-21  Score=157.42  Aligned_cols=194  Identities=11%  Similarity=0.046  Sum_probs=139.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc---hhhh---cc--CCCceeEeecccCccc------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRK---WI--GHPRFELIRHDVTEPL------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~---~~--~~~~~~~~~~dl~~~~------   94 (259)
                      ++++|+++||||+|+||++++++|+++|++ |++++|+......   .++.   ..  ...++.++.+|+++.+      
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~   81 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGAN-VAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAV   81 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHH
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH
Confidence            467899999999999999999999999998 9999987653221   1111   11  1357889999999987      


Q ss_pred             ------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCC
Q 025022           95 ------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQ  159 (259)
Q Consensus        95 ------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~  159 (259)
                            +.++|++||+||.....    ...++++..+++|+.++..+++++.+    .+. +||++||...+...     
T Consensus        82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~-----  156 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA-----  156 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH-----
T ss_pred             HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC-----
Confidence                  45899999999976432    22344677899999999999998754    344 99999997654310     


Q ss_pred             CCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 025022          160 DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       160 ~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (259)
                               +..+...|+.+|.+.+.+.+.++.+.   +++++.++||.+....       +.     ......      
T Consensus       157 ---------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~-------~~-----~~~~~~------  209 (274)
T 3e03_A          157 ---------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATD-------AI-----NMLPGV------  209 (274)
T ss_dssp             ---------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------------------CC------
T ss_pred             ---------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccc-------hh-----hhcccc------
Confidence                     02334679999999999999988764   7999999998544322       10     001111      


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                         ....+...+|+|+++++++
T Consensus       210 ---~~~~~~~pedvA~~v~~l~  228 (274)
T 3e03_A          210 ---DAAACRRPEIMADAAHAVL  228 (274)
T ss_dssp             ---CGGGSBCTHHHHHHHHHHH
T ss_pred             ---cccccCCHHHHHHHHHHHh
Confidence               1122568899999998875

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.87  E-value=2.3e-21  Score=154.04  Aligned_cols=198  Identities=15%  Similarity=0.117  Sum_probs=134.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc---------cCCcCEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL---------LIEVDQI  101 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~---------~~~~d~v  101 (259)
                      +|+++||||+|+||+++++.|+++|++ |++++|+...... ...... ..++..+  |..+..         +.++|++
T Consensus         1 Mk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~-~~~l~~~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMGSALRLSEAGHT-VACHDESFKQKDE-LEAFAETYPQLKPM--SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHHH-HHHHHHHCTTSEEC--CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             CeEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHH-HHHHHhcCCcEEEE--CHHHHHHHHHHHHHHhCCCCEE
Confidence            368999999999999999999999998 9999886543222 111100 1223333  333322         4589999


Q ss_pred             EEccCCC-Ccc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          102 YHLACPA-SPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       102 i~~a~~~-~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      ||+||.. ...    ...++++..+++|+.++.++++++.    +.+. +||++||...+.                +..
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------~~~  140 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------------PWK  140 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS----------------CCT
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc----------------CCC
Confidence            9999976 321    1234567889999999999988774    4454 999999986553                233


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcc-HH---HHHHHHHHcCCCeEEecCCceeeee
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGR-VV---SNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      +...|+.+|.+.+.+.+.++.+.   ++++++++||.++||........ +.   ...........+         ...+
T Consensus       141 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p---------~~~~  211 (254)
T 1zmt_A          141 ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA---------LQRL  211 (254)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS---------SSSC
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCC---------CCCC
Confidence            45689999999999999988764   89999999999988764322111 10   011111111111         1136


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      .+++|+|+++++++
T Consensus       212 ~~p~dvA~~v~~l~  225 (254)
T 1zmt_A          212 GTQKELGELVAFLA  225 (254)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHh
Confidence            78999999998875

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.87  E-value=4.5e-21  Score=158.54  Aligned_cols=196  Identities=11%  Similarity=-0.022  Sum_probs=142.4

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc------hhhhcc--CCCceeEeecccCccc-----
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD------NLRKWI--GHPRFELIRHDVTEPL-----   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~------~~~~~~--~~~~~~~~~~dl~~~~-----   94 (259)
                      ..+++++++||||+|+||.++++.|+++|++ |+++.|+......      .....+  ...++.++.+|+++.+     
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~-Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~  119 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGAN-IVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAA  119 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCE-EEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence            4467899999999999999999999999998 9999887654221      111111  1247888999999987     


Q ss_pred             -------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCC
Q 025022           95 -------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHP  158 (259)
Q Consensus        95 -------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~  158 (259)
                             +.++|++||+||.....    ...++++..+++|+.++.++++++..    .+. +||++||...+...    
T Consensus       120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~----  195 (346)
T 3kvo_A          120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV----  195 (346)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG----
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC----
Confidence                   45899999999975432    22345678899999999999998843    344 99999998755410    


Q ss_pred             CCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEec
Q 025022          159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       159 ~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (259)
                                +......|+.+|.+.+.+.+.++.+.  ++++..+.|+.++...       +    ........      
T Consensus       196 ----------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~-------~----~~~~~~~~------  248 (346)
T 3kvo_A          196 ----------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTA-------A----MDMLGGPG------  248 (346)
T ss_dssp             ----------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCH-------H----HHHHCC--------
T ss_pred             ----------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccH-------H----HHhhcccc------
Confidence                      13445789999999999999998874  7999999998644422       1    11111111      


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                         ....+..++|+|+++++++
T Consensus       249 ---~~~r~~~pedvA~~v~~L~  267 (346)
T 3kvo_A          249 ---IESQCRKVDIIADAAYSIF  267 (346)
T ss_dssp             ---CGGGCBCTHHHHHHHHHHH
T ss_pred             ---ccccCCCHHHHHHHHHHHH
Confidence               1223567899999998876

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.87  E-value=2.6e-21  Score=153.82  Aligned_cols=201  Identities=16%  Similarity=0.070  Sum_probs=143.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++++||||+|+||++++++|+++|+. |+++ .|+.....+..+... ...++.++.+|+++.+            +
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGAL-VAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL   83 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence            56799999999999999999999999998 7775 443322222222211 1346788999999876            1


Q ss_pred             ------CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHh--CC-eEEEEecceeecCCCCCCCCCC
Q 025022           96 ------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        96 ------~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                            .++|++||+||......    ..++.+..+++|+.++..+++++.+.  +. +||++||...+.          
T Consensus        84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~----------  153 (255)
T 3icc_A           84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI----------  153 (255)
T ss_dssp             HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS----------
T ss_pred             cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc----------
Confidence                  24999999999754322    22345678899999999999998765  23 999999987554          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +......|+.+|.+.+.+.+.++.+.   ++++..++||.+..+........  ...........+        
T Consensus       154 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~~~~~~~~--------  217 (255)
T 3icc_A          154 ------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSD--PMMKQYATTISA--------  217 (255)
T ss_dssp             ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTS--HHHHHHHHHTST--------
T ss_pred             ------CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhccc--HHHHHhhhccCC--------
Confidence                  33445789999999999999998764   89999999999988764322111  111222222222        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+.+++|+|+++++++
T Consensus       218 -~~~~~~~~dva~~~~~l~  235 (255)
T 3icc_A          218 -FNRLGEVEDIADTAAFLA  235 (255)
T ss_dssp             -TSSCBCHHHHHHHHHHHH
T ss_pred             -cCCCCCHHHHHHHHHHHh
Confidence             123568999999998875

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.86  E-value=4.5e-22  Score=158.63  Aligned_cols=164  Identities=10%  Similarity=-0.039  Sum_probs=125.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHh---cCCCeEEEEcCCCCCCcchhhhcc---CCCceeEeecccCccc--------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLME---NEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL--------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~---~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~--------   94 (259)
                      .+++|+++||||+|+||+++++.|++   +|++ |++++|+.....+..++..   ...++.++.+|+++.+        
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   81 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSV-MLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA   81 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCE-EEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCe-EEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence            46789999999999999999999999   8998 9999886433222222211   1346889999999976        


Q ss_pred             -c-----CCcC--EEEEccCCCCc--c-----ccccChhHHHHHhhhhHHHHHHHHHHh------CC-eEEEEecceeec
Q 025022           95 -L-----IEVD--QIYHLACPASP--I-----FYKYNPVKTIKTNVIGTLNMLGLAKRV------GA-RILLTSTSEVYG  152 (259)
Q Consensus        95 -~-----~~~d--~vi~~a~~~~~--~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~-~~i~~Ss~~~~~  152 (259)
                       .     .++|  ++||+||....  .     ...++++..+++|+.++.++++++.+.      +. +||++||...+.
T Consensus        82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~  161 (259)
T 1oaa_A           82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred             HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence             1     2578  99999997532  1     123456789999999999999988653      23 899999987654


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCC
Q 025022          153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRIARIFNTYGP  209 (259)
Q Consensus       153 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~lr~~~v~g~  209 (259)
                                      +..+...|+.+|.+.+.+.+.++.+. +++++.++||.+-.+
T Consensus       162 ----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~  203 (259)
T 1oaa_A          162 ----------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND  203 (259)
T ss_dssp             ----------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred             ----------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcc
Confidence                            33445689999999999999998875 488888888877553

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.86  E-value=2.3e-21  Score=155.17  Aligned_cols=160  Identities=17%  Similarity=0.117  Sum_probs=120.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---CCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~------------   94 (259)
                      +++++++||||+|+||+++++.|+++|++ |++++|+.....+..+.+.   ...++.++.+|+++.+            
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH   83 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999999998 9998886433221111111   1236888999999976            


Q ss_pred             cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHH----HHHhC---C-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL----AKRVG---A-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~----~~~~~---~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +.++|++||+||...    ..+++..+++|+.++..+.+.    +++.+   . +||++||...+.              
T Consensus        84 ~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  145 (267)
T 2gdz_A           84 FGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM--------------  145 (267)
T ss_dssp             HSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS--------------
T ss_pred             cCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccC--------------
Confidence            357999999999653    456788999999976665554    44432   4 999999987664              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHH--H---HhCCcEEEEEeccccCCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYH--R---QHGIEIRIARIFNTYGPR  210 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~--~---~~~~~~~~lr~~~v~g~~  210 (259)
                        +..+...|+.+|.+.+.+.+.++  .   ..++++++++||.+.++.
T Consensus       146 --~~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~  192 (267)
T 2gdz_A          146 --PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAI  192 (267)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHH
T ss_pred             --CCCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchh
Confidence              22344679999999999988752  2   358999999999998763

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.85  E-value=1.1e-20  Score=151.41  Aligned_cols=161  Identities=13%  Similarity=0.039  Sum_probs=124.2

Q ss_pred             cCCCEEEEEcC--chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++|+++||||  +|+||+++++.|+++|++ |++++|+.....+.+...+ ..++.++.+|+++.+            +
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAI   82 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCE-EEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCCE-EEEEecChHHHHHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence            56789999999  999999999999999998 9888886432212222222 236788999999977            3


Q ss_pred             C---CcCEEEEccCCCCc---------cccccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCC
Q 025022           96 I---EVDQIYHLACPASP---------IFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        96 ~---~~d~vi~~a~~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~  160 (259)
                      .   ++|++||+||....         ....++++..+++|+.++..+++++.+.-   .+||++||...+         
T Consensus        83 g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~---------  153 (269)
T 2h7i_A           83 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR---------  153 (269)
T ss_dssp             CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS---------
T ss_pred             CCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCcccc---------
Confidence            3   89999999997541         11234467789999999999999987642   299999986532         


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGP  209 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~  209 (259)
                              +......|+.+|.+.+.+.+.++.+.   +++++.++||.+..+
T Consensus       154 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~  197 (269)
T 2h7i_A          154 --------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTL  197 (269)
T ss_dssp             --------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCH
T ss_pred             --------ccCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccch
Confidence                    22334679999999999999988764   899999999988765

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.85  E-value=1.5e-20  Score=148.40  Aligned_cols=195  Identities=15%  Similarity=0.112  Sum_probs=130.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-c--CCCCCCcchhhhccCCCceeEeecccCccc---------cCCcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-D--NYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------LIEVD   99 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---------~~~~d   99 (259)
                      +|+++||||+|+||+++++.|+++|++ |+++ .  |+........+. +  .+.+..  |..+..         +.++|
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~r~~~~~~~~~~~-~--~~~~~~--~~~~v~~~~~~~~~~~g~iD   74 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYT-VVCHDASFADAAERQRFESE-N--PGTIAL--AEQKPERLVDATLQHGEAID   74 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHHHHHHHHHH-S--TTEEEC--CCCCGGGHHHHHGGGSSCEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCcCCHHHHHHHHHH-h--CCCccc--CHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999999999999998 8888 5  754322221121 1  122222  222221         45899


Q ss_pred             EEEEccCCCCc---c----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022          100 QIYHLACPASP---I----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus       100 ~vi~~a~~~~~---~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++||+||....   .    ...++++..+++|+.++..+++++.    +.+. +||++||...+.               
T Consensus        75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~---------------  139 (244)
T 1zmo_A           75 TIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK---------------  139 (244)
T ss_dssp             EEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS---------------
T ss_pred             EEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC---------------
Confidence            99999996543   1    1234567789999999999988774    4455 999999987654               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHH-HHHHHHHHc-CCCeEEecCCceee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVV-SNFIAQAIR-GEPLTVQAPGTQTR  242 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~  242 (259)
                       +......|+.+|.+.+.+.+.++.+   +++++++++||.+..+.... ..... ......... ..+         ..
T Consensus       140 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-~~~~~~~~~~~~~~~~~~p---------~~  208 (244)
T 1zmo_A          140 -PLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFP-TSDWENNPELRERVDRDVP---------LG  208 (244)
T ss_dssp             -CCTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBC-HHHHHHCHHHHHHHHHHCT---------TC
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccc-cccccchHHHHHHHhcCCC---------CC
Confidence             2234467999999999999998876   47999999999987764200 00010 011111111 111         11


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+...+|+|+++++++
T Consensus       209 r~~~pe~vA~~v~~l~  224 (244)
T 1zmo_A          209 RLGRPDEMGALITFLA  224 (244)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHc
Confidence            3568899999998875

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.85  E-value=8.8e-21  Score=151.20  Aligned_cols=163  Identities=13%  Similarity=0.005  Sum_probs=122.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc-------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL-------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~-------------~   95 (259)
                      +++++++||||+|+||+++++.|+++|++ |++++|+.....+..++.. ...++.++.+|+++.+             +
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   81 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGAT-VYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ   81 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            67899999999999999999999999998 8888886432222111110 0246888999999976             2


Q ss_pred             CCcCEEEEccC--CC-------Cc--cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCC
Q 025022           96 IEVDQIYHLAC--PA-------SP--IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQ  159 (259)
Q Consensus        96 ~~~d~vi~~a~--~~-------~~--~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~  159 (259)
                      .++|++||+||  ..       ..  ....++++..+++|+.++..+.+++.    +.+. +||++||...+..      
T Consensus        82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------  155 (260)
T 2qq5_A           82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY------  155 (260)
T ss_dssp             TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC------
T ss_pred             CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC------
Confidence            47899999994  21       11  12234466788899999887776654    4454 9999999865431      


Q ss_pred             CCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          160 DESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       160 ~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                                 .+...|+.+|.+.+.+.+.++.+   +++++++++||.+..+.
T Consensus       156 -----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~  198 (260)
T 2qq5_A          156 -----------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTEL  198 (260)
T ss_dssp             -----------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTT
T ss_pred             -----------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHH
Confidence                       12367999999999999998865   48999999999998875

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.84  E-value=2e-20  Score=153.81  Aligned_cols=162  Identities=20%  Similarity=0.156  Sum_probs=122.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc---hhhhc----cCCCceeEeecccCccc----------
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKW----IGHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~----~~~~~~~~~~~dl~~~~----------   94 (259)
                      +++|+||||+|+||++++++|+++|++ |+++.|+......   .++..    ....++.++.+|+++.+          
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~-v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQ-SFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTC-CEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCc-eEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            578999999999999999999999998 7777664332221   11111    01247889999999977          


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      ..++|++||+||.....    ...++++..+++|+.++.++++++    ++.+. +||++||...+.             
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~-------------  147 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM-------------  147 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS-------------
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCccccc-------------
Confidence            24699999999965321    123456789999999999999885    44566 999999986553             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                         +......|+.+|.+.+.+.+.++.+   .++++++++||.+..+.
T Consensus       148 ---~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~  192 (327)
T 1jtv_A          148 ---GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF  192 (327)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence               2233467999999999999999875   58999999999998865

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.84  E-value=9.5e-21  Score=154.71  Aligned_cols=181  Identities=16%  Similarity=0.068  Sum_probs=127.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCcc-c-----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEP-L-----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~-~-----------   94 (259)
                      .+++++++||||+|+||++++++|+++|++ |++++|+.....+..+++..  ..++.++.+|+++. +           
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~-V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIM-VVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence            356789999999999999999999999998 99999865443333333221  24789999999997 4           


Q ss_pred             -cCCcCEEEEccCCCCcc----------------------------------ccccChhHHHHHhhhhHHHHHHHHHH--
Q 025022           95 -LIEVDQIYHLACPASPI----------------------------------FYKYNPVKTIKTNVIGTLNMLGLAKR--  137 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----------------------------------~~~~~~~~~~~~n~~~~~~l~~~~~~--  137 (259)
                       ..++|++||+||.....                                  ...+..+..+++|+.++..+++++..  
T Consensus        88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l  167 (311)
T 3o26_A           88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL  167 (311)
T ss_dssp             HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence             35899999999976321                                  12233566799999999999888753  


Q ss_pred             --hCC-eEEEEecceeecCCCCC-----------CC----------------CCCCcCCCCCCCCCCchHHHHHHHHHHH
Q 025022          138 --VGA-RILLTSTSEVYGDPLVH-----------PQ----------------DESYWGNVNPIGVRSCYDEGKRVAETLM  187 (259)
Q Consensus       138 --~~~-~~i~~Ss~~~~~~~~~~-----------~~----------------~e~~~~~~~~~~~~~~Y~~sK~~~e~~~  187 (259)
                        .+. +||++||...+......           ..                .+........+.+...|+.||.+.+.+.
T Consensus       168 ~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~  247 (311)
T 3o26_A          168 QLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYT  247 (311)
T ss_dssp             TTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHH
Confidence              344 99999998654321000           00                0000000001234467999999999999


Q ss_pred             HHHHHHh-CCcEEEEEeccccCCC
Q 025022          188 FDYHRQH-GIEIRIARIFNTYGPR  210 (259)
Q Consensus       188 ~~~~~~~-~~~~~~lr~~~v~g~~  210 (259)
                      +.++.+. +++++.++||++..+.
T Consensus       248 ~~la~e~~~i~v~~v~PG~v~T~~  271 (311)
T 3o26_A          248 RVLANKIPKFQVNCVCPGLVKTEM  271 (311)
T ss_dssp             HHHHHHCTTSEEEEECCCSBCSGG
T ss_pred             HHHHhhcCCceEEEecCCceecCC
Confidence            9998875 6999999999998764

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.84  E-value=6.1e-20  Score=156.80  Aligned_cols=197  Identities=14%  Similarity=-0.012  Sum_probs=139.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++++++||||+|+||.++++.|+++|++ |++++|+..  .+.+.......++.++.+|+++.+            +.+
T Consensus       211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~-Vvl~~r~~~--~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~  287 (454)
T 3u0b_A          211 LDGKVAVVTGAARGIGATIAEVFARDGAT-VVAIDVDGA--AEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGG  287 (454)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECGGG--HHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTT
T ss_pred             CCCCEEEEeCCchHHHHHHHHHHHHCCCE-EEEEeCCcc--HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999999999999999998 888887532  122222221225678999999987            334


Q ss_pred             -cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHh----CC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           98 -VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        98 -~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                       +|+|||+||.....    ...++++..+++|+.++.++.+++...    +. +||++||...+.               
T Consensus       288 ~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~---------------  352 (454)
T 3u0b_A          288 KVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIA---------------  352 (454)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHH---------------
T ss_pred             CceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCC---------------
Confidence             99999999976542    223456788999999999999999875    44 999999986553               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       .......|+.+|.+.+.+.+.++.+   ++++++++.||.+..+.....    ............+         ...+
T Consensus       353 -g~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~----~~~~~~~~~~~~~---------l~r~  418 (454)
T 3u0b_A          353 -GNRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAI----PLATREVGRRLNS---------LFQG  418 (454)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC--------------CHHHHHSBT---------TSSC
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhc----chhhHHHHHhhcc---------ccCC
Confidence             2234467999999999999988765   489999999999987652210    0000001111111         1224


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ...+|+|+++.+++
T Consensus       419 g~pedvA~~v~fL~  432 (454)
T 3u0b_A          419 GQPVDVAELIAYFA  432 (454)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            57899999998875

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.83  E-value=5e-19  Score=143.75  Aligned_cols=201  Identities=12%  Similarity=0.048  Sum_probs=133.7

Q ss_pred             cCCCEEEEEcCc--hhhhHHHHHHHHhcCCCeEEEEcCCC----------CCCcchhhhccCC---CceeEeec------
Q 025022           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYF----------TGSKDNLRKWIGH---PRFELIRH------   88 (259)
Q Consensus        30 ~~~~~vlItGat--G~iG~~l~~~L~~~g~~~V~~~~r~~----------~~~~~~~~~~~~~---~~~~~~~~------   88 (259)
                      +++|+++||||+  |+||+++++.|+++|++ |++++|+.          ....+..++....   .....+.+      
T Consensus         6 l~~k~~lVTGas~~~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (297)
T 1d7o_A            6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN   84 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCCe-EEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccc
Confidence            668999999999  99999999999999998 88876431          0111111111000   00122222      


Q ss_pred             ------ccCc--------cc------------cCCcCEEEEccCCCC--c----cccccChhHHHHHhhhhHHHHHHHHH
Q 025022           89 ------DVTE--------PL------------LIEVDQIYHLACPAS--P----IFYKYNPVKTIKTNVIGTLNMLGLAK  136 (259)
Q Consensus        89 ------dl~~--------~~------------~~~~d~vi~~a~~~~--~----~~~~~~~~~~~~~n~~~~~~l~~~~~  136 (259)
                            |+++        .+            +.++|++||+||...  .    ....++++..+++|+.++..+++++.
T Consensus        85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~  164 (297)
T 1d7o_A           85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL  164 (297)
T ss_dssp             GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred             hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence                  2222        22            458999999998532  1    12234567899999999999999997


Q ss_pred             Hh---CCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCC-CchHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccC
Q 025022          137 RV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYG  208 (259)
Q Consensus       137 ~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v~g  208 (259)
                      +.   +.+||++||...+.                +.... ..|+.+|.+.+.+.+.++.+    ++++++.++||++.+
T Consensus       165 ~~m~~~g~iv~isS~~~~~----------------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T  228 (297)
T 1d7o_A          165 PIMNPGGASISLTYIASER----------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGS  228 (297)
T ss_dssp             GGEEEEEEEEEEECGGGTS----------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBC
T ss_pred             HHhccCceEEEEecccccc----------------CCCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEecccccc
Confidence            64   23999999986543                11222 46999999999999988765    589999999999999


Q ss_pred             CCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          209 PRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +.....  .....+........++         ..+..++|+|+++++++
T Consensus       229 ~~~~~~--~~~~~~~~~~~~~~p~---------~r~~~pedvA~~v~~l~  267 (297)
T 1d7o_A          229 RAAKAI--GFIDTMIEYSYNNAPI---------QKTLTADEVGNAAAFLV  267 (297)
T ss_dssp             CCSSCC--SHHHHHHHHHHHHSSS---------CCCBCHHHHHHHHHHHT
T ss_pred             chhhhc--cccHHHHHHhhccCCC---------CCCCCHHHHHHHHHHHh
Confidence            864321  1223333333222221         12458899999998875

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.81  E-value=4.4e-19  Score=152.85  Aligned_cols=195  Identities=15%  Similarity=0.103  Sum_probs=136.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC--cchhhhcc--CCCceeEeecccCccc-----------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNLRKWI--GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~~~~--~~~~~~~~~~dl~~~~-----------   94 (259)
                      ..+++++||||+|+||.++++.|+++|+..|+++.|+....  .+.+...+  ...++.++.+|++|.+           
T Consensus       224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~  303 (486)
T 2fr1_A          224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD  303 (486)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence            35789999999999999999999999997688888865321  11111111  1247889999999977           


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      ...+|+|||+||.....    ....+.+..+++|+.++.++.+++.+.+. +||++||...+..                
T Consensus       304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g----------------  367 (486)
T 2fr1_A          304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFG----------------  367 (486)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTC----------------
T ss_pred             cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCC----------------
Confidence            23579999999976532    12344667888999999999999988877 9999999754321                


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHH
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD  249 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  249 (259)
                      ......|+.+|...+.+.+... ..++++++++||.+.+++..       .....        ..+.  .....+++.+|
T Consensus       368 ~~g~~~Yaaaka~l~~la~~~~-~~gi~v~~i~pG~~~~~gm~-------~~~~~--------~~~~--~~g~~~i~~e~  429 (486)
T 2fr1_A          368 APGLGGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGMA-------EGPVA--------DRFR--RHGVIEMPPET  429 (486)
T ss_dssp             CTTCTTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC---------------------------CT--TTTEECBCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCeeCCCccc-------chhHH--------HHHH--hcCCCCCCHHH
Confidence            1223569999999998877664 46899999999999876421       11000        0011  11245788999


Q ss_pred             HHHHHHhhh
Q 025022          250 MVCKSCFLA  258 (259)
Q Consensus       250 ~a~~~~~~l  258 (259)
                      +++++..++
T Consensus       430 ~a~~l~~~l  438 (486)
T 2fr1_A          430 ACRALQNAL  438 (486)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887764

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.79  E-value=7.6e-19  Score=143.80  Aligned_cols=159  Identities=16%  Similarity=0.058  Sum_probs=115.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC-----CCcchh---hhccCCCceeEeecccCccc------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-----GSKDNL---RKWIGHPRFELIRHDVTEPL------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-----~~~~~~---~~~~~~~~~~~~~~dl~~~~------   94 (259)
                      .+++|+++||||+|+||+++++.|+++|++ |++.++...     ...+..   ...+.... ....+|+.+.+      
T Consensus         6 ~l~gk~~lVTGas~GIG~~~a~~La~~Ga~-Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~-~~~~~D~~~~~~~~~~~   83 (319)
T 1gz6_A            6 RFDGRVVLVTGAGGGLGRAYALAFAERGAL-VVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-GKAVANYDSVEAGEKLV   83 (319)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-CEEEEECCCGGGHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCCcccccccCCHHHHHHHHHHHHhhC-CeEEEeCCCHHHHHHHH
Confidence            367899999999999999999999999998 888765321     011111   11111011 12346777765      


Q ss_pred             ------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEeccee-ecCCCCCC
Q 025022           95 ------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEV-YGDPLVHP  158 (259)
Q Consensus        95 ------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~-~~~~~~~~  158 (259)
                            +.++|++||+||.....    ....+++..+++|+.++.++++++    ++.+. +||++||... ++.     
T Consensus        84 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~-----  158 (319)
T 1gz6_A           84 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN-----  158 (319)
T ss_dssp             HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-----
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC-----
Confidence                  46899999999976432    123456788999999999998877    44555 9999999743 432     


Q ss_pred             CCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccc
Q 025022          159 QDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNT  206 (259)
Q Consensus       159 ~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v  206 (259)
                                  .+...|+.+|.+.+.+.+.++.+   +++++++++||.+
T Consensus       159 ------------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~  197 (319)
T 1gz6_A          159 ------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG  197 (319)
T ss_dssp             ------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC
T ss_pred             ------------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc
Confidence                        23467999999999999998876   4899999999986

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.79  E-value=1.5e-18  Score=150.19  Aligned_cols=160  Identities=17%  Similarity=0.184  Sum_probs=122.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC--cchh-hhccC-CCceeEeecccCccc-----c--CCcC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNL-RKWIG-HPRFELIRHDVTEPL-----L--IEVD   99 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~-~~~~~-~~~~~~~~~dl~~~~-----~--~~~d   99 (259)
                      .+++|+||||+|+||.++++.|.++|+..|+++.|+....  .+.+ +++.. ..++.++.+|++|.+     +  .++|
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld  337 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN  337 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence            4689999999999999999999999996588888865321  1111 21111 246889999999987     2  4699


Q ss_pred             EEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHh-CC-eEEEEeccee-ecCCCCCCCCCCCcCCCCCCCC
Q 025022          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEV-YGDPLVHPQDESYWGNVNPIGV  172 (259)
Q Consensus       100 ~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~~Ss~~~-~~~~~~~~~~e~~~~~~~~~~~  172 (259)
                      +|||+||......    ...+.+..+++|+.++.++.+++... +. +||++||... ++.                 ..
T Consensus       338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~-----------------~g  400 (511)
T 2z5l_A          338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGN-----------------AG  400 (511)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCC-----------------TT
T ss_pred             EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCC-----------------CC
Confidence            9999999765421    22345678899999999999998776 55 9999999853 332                 23


Q ss_pred             CCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccC
Q 025022          173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG  208 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g  208 (259)
                      ...|+.+|...+.+.+.+. ..++++++++||.+.+
T Consensus       401 ~~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~  435 (511)
T 2z5l_A          401 QGAYAAANAALDALAERRR-AAGLPATSVAWGLWGG  435 (511)
T ss_dssp             BHHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCS
T ss_pred             CHHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccC
Confidence            3679999999999988764 5689999999998843

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.77  E-value=4.3e-19  Score=145.83  Aligned_cols=169  Identities=12%  Similarity=0.090  Sum_probs=117.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC------CeEEEEcCCCCCC-cchhhhccCCCceeEeecccCccc-----cCCcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPL-----LIEVD   99 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d   99 (259)
                      .|||+||||+||||++++..|+++|+      .+|+++++..... .......+....+.+. +|+.+..     +.++|
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~a~~~~D   82 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEATDDPKVAFKDAD   82 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEEESCHHHHTTTCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccccccc-CCeEeccChHHHhCCCC
Confidence            47999999999999999999999886      1488888753100 0110001111111222 3443321     77899


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C--eEEEEecce-eecCCCCCCCCCCCcCCCCCCCCCCc
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTSE-VYGDPLVHPQDESYWGNVNPIGVRSC  175 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~~Ss~~-~~~~~~~~~~~e~~~~~~~~~~~~~~  175 (259)
                      +|||+||....  ...+..++++.|+.++.++++++++.+ .  +++++|+.. +..     +..++.   .....|...
T Consensus        83 ~Vih~Ag~~~~--~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~---~~~~~p~~~  152 (327)
T 1y7t_A           83 YALLVGAAPRK--AGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKN---APGLNPRNF  152 (327)
T ss_dssp             EEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHT---CTTSCGGGE
T ss_pred             EEEECCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHH---cCCCChhhe
Confidence            99999997643  235677899999999999999999985 4  788877653 110     001110   002345567


Q ss_pred             hHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 025022          176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRM  211 (259)
Q Consensus       176 Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~  211 (259)
                      |+.+|...|++...+++..+++.+++|++++|||..
T Consensus       153 yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~  188 (327)
T 1y7t_A          153 TAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS  188 (327)
T ss_dssp             EECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred             eccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence            999999999999999988899999999999999863

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.77  E-value=1.4e-17  Score=136.34  Aligned_cols=203  Identities=13%  Similarity=0.055  Sum_probs=130.3

Q ss_pred             cCCCEEEEEcC--chhhhHHHHHHHHhcCCCeEEEEcCCC----------CCCcchhhhccCCC---ceeEee-------
Q 025022           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYF----------TGSKDNLRKWIGHP---RFELIR-------   87 (259)
Q Consensus        30 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~----------~~~~~~~~~~~~~~---~~~~~~-------   87 (259)
                      +++|+++||||  +|+||+++++.|+++|++ |++++|+.          ....+..+......   ...++.       
T Consensus         7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   85 (315)
T 2o2s_A            7 LRGQTAFVAGVADSHGYGWAIAKHLASAGAR-VALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDK   85 (315)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHTTTCE-EEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSS
T ss_pred             CCCCEEEEeCCCCCCChHHHHHHHHHHCCCE-EEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccc
Confidence            56789999999  899999999999999998 88887532          00111111110000   023333       


Q ss_pred             -----cccCc--------cc------------cCCcCEEEEccCCCC---c---cccccChhHHHHHhhhhHHHHHHHHH
Q 025022           88 -----HDVTE--------PL------------LIEVDQIYHLACPAS---P---IFYKYNPVKTIKTNVIGTLNMLGLAK  136 (259)
Q Consensus        88 -----~dl~~--------~~------------~~~~d~vi~~a~~~~---~---~~~~~~~~~~~~~n~~~~~~l~~~~~  136 (259)
                           +|+++        .+            +.++|++||+||...   .   .....+++..+++|+.++..+++++.
T Consensus        86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~  165 (315)
T 2o2s_A           86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFG  165 (315)
T ss_dssp             TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred             cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence                 33433        22            458999999998542   1   12234567889999999999999986


Q ss_pred             Hh---CCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCC-CchHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccC
Q 025022          137 RV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYG  208 (259)
Q Consensus       137 ~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v~g  208 (259)
                      +.   +.+||++||...+.                +.... ..|+.+|.+.+.+.+.++.+    ++++++.++||.+..
T Consensus       166 ~~m~~~g~Iv~isS~~~~~----------------~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T  229 (315)
T 2o2s_A          166 PIMNEGGSAVTLSYLAAER----------------VVPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKS  229 (315)
T ss_dssp             TTEEEEEEEEEEEEGGGTS----------------CCTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCC
T ss_pred             HHHhcCCEEEEEecccccc----------------cCCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccc
Confidence            54   23999999986543                11222 36999999999999988765    589999999999876


Q ss_pred             CCCCC----CCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          209 PRMNI----DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       209 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +....    ....+...+........++         ..+...+|+|+++++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------~r~~~pedvA~~v~~L~  274 (315)
T 2o2s_A          230 RAASAIGKSGEKSFIDYAIDYSYNNAPL---------RRDLHSDDVGGAALFLL  274 (315)
T ss_dssp             HHHHHTTCSSSSCHHHHHHHHHHHHSSS---------CCCCCHHHHHHHHHHHT
T ss_pred             hhhhhccccccchhHHHHHHHHhccCCC---------CCCCCHHHHHHHHHHHh
Confidence            42100    0001112221111111111         12458899999999876

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.76  E-value=1.7e-17  Score=142.57  Aligned_cols=162  Identities=15%  Similarity=0.130  Sum_probs=124.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC--cchhhhcc--CCCceeEeecccCccc-----------cC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNLRKWI--GHPRFELIRHDVTEPL-----------LI   96 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~~~~--~~~~~~~~~~dl~~~~-----------~~   96 (259)
                      +++++||||+|+||.++++.|+++|+..|+++.|+....  ...+...+  ...++.++.+|++|.+           ..
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g  318 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA  318 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence            489999999999999999999999996588888764322  11221111  1357889999999987           23


Q ss_pred             CcCEEEEccCCC-Cc----cccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022           97 EVDQIYHLACPA-SP----IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus        97 ~~d~vi~~a~~~-~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ++|+|||+||.. ..    ....++.+..+++|+.++.++.+++.+.+. +||++||...+.                ..
T Consensus       319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~----------------g~  382 (496)
T 3mje_A          319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVW----------------GS  382 (496)
T ss_dssp             CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHT----------------TC
T ss_pred             CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcC----------------CC
Confidence            699999999976 32    122344678899999999999999988877 999999986443                22


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR  210 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~  210 (259)
                      .....|+.+|...+.+.+... ..|++++++.||.+.+++
T Consensus       383 ~g~~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~g  421 (496)
T 3mje_A          383 GGQPGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVG  421 (496)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSC
T ss_pred             CCcHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCc
Confidence            334679999999999988764 569999999999887765

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.76  E-value=8e-18  Score=137.96  Aligned_cols=207  Identities=11%  Similarity=0.004  Sum_probs=113.5

Q ss_pred             cCCCEEEEEcC--chhhhHHHHHHHHhcCCCeEEEEcCCC-----------CCCcc----------hhhhccCCC-----
Q 025022           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYF-----------TGSKD----------NLRKWIGHP-----   81 (259)
Q Consensus        30 ~~~~~vlItGa--tG~iG~~l~~~L~~~g~~~V~~~~r~~-----------~~~~~----------~~~~~~~~~-----   81 (259)
                      +++++++||||  +|+||+++++.|+++|++ |++++|+.           ....+          .....+...     
T Consensus         7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (319)
T 2ptg_A            7 LRGKTAFVAGVADSNGYGWAICKLLRAAGAR-VLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV   85 (319)
T ss_dssp             CTTCEEEEECCCCTTSHHHHHHHHHHHTTCE-EEEEECHHHHHHHHC--------------------------------C
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCE-EEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence            56789999999  899999999999999998 88886531           10000          000000000     


Q ss_pred             ceeEeec------------ccCc--------cc------------cCCcCEEEEccCCCC--c----cccccChhHHHHH
Q 025022           82 RFELIRH------------DVTE--------PL------------LIEVDQIYHLACPAS--P----IFYKYNPVKTIKT  123 (259)
Q Consensus        82 ~~~~~~~------------dl~~--------~~------------~~~~d~vi~~a~~~~--~----~~~~~~~~~~~~~  123 (259)
                      ...++.+            |+++        .+            +.++|++||+||...  .    ....++++..+++
T Consensus        86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~v  165 (319)
T 2ptg_A           86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSS  165 (319)
T ss_dssp             CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhH
Confidence            0233333            3333        11            458999999998542  1    1223456788999


Q ss_pred             hhhhHHHHHHHHHHh---CCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCC-CchHHHHHHHHHHHHHHHHH----hC
Q 025022          124 NVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQ----HG  195 (259)
Q Consensus       124 n~~~~~~l~~~~~~~---~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~~  195 (259)
                      |+.++..+++++.+.   +.+||++||...+.                +.... ..|+.+|.+.+.+.+.++.+    ++
T Consensus       166 N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----------------~~~~~~~~Y~asKaal~~l~~~la~el~~~~g  229 (319)
T 2ptg_A          166 SSYSFVSLLQHFLPLMKEGGSALALSYIASEK----------------VIPGYGGGMSSAKAALESDCRTLAFEAGRARA  229 (319)
T ss_dssp             HTHHHHHHHHHHGGGEEEEEEEEEEEECC----------------------------------THHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHhcCceEEEEecccccc----------------ccCccchhhHHHHHHHHHHHHHHHHHhccccC
Confidence            999999999998764   23999999986543                11222 46999999999999988765    58


Q ss_pred             CcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          196 IEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       196 ~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ++++.++||.+..+............+.....     ..+........+..++|+|+++++++
T Consensus       230 Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~r~~~peevA~~v~~L~  287 (319)
T 2ptg_A          230 VRVNCISAGPLKSRAASAIGKAGDKTFIDLAI-----DYSEANAPLQKELESDDVGRAALFLL  287 (319)
T ss_dssp             CEEEEEEECCCC------------------------------------CCCHHHHHHHHHHHT
T ss_pred             eeEEEEeeCCccChhhhhcccccchhhHHHHH-----HHHhccCCCCCCCCHHHHHHHHHHHh
Confidence            99999999998876421100000000000000     00000011223568999999999876

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.75  E-value=2.8e-17  Score=135.24  Aligned_cols=161  Identities=8%  Similarity=-0.030  Sum_probs=115.4

Q ss_pred             CCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCC---------CCC---cchhhh-ccCCCceeEeecccCcc---
Q 025022           32 NMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYF---------TGS---KDNLRK-WIGHPRFELIRHDVTEP---   93 (259)
Q Consensus        32 ~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~---------~~~---~~~~~~-~~~~~~~~~~~~dl~~~---   93 (259)
                      +|+++||||++  +||.+++++|+++|++ |++..++.         ...   ...... ......+.++.+|+.+.   
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~G~~-Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~   80 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKRNVK-IIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCE-EEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence            68999999875  9999999999999998 87655432         111   111111 01113466777777665   


Q ss_pred             ------------------c-----------cCCcCEEEEccCCCC--c----cccccChhHHHHHhhhhHHHHHHHHHHh
Q 025022           94 ------------------L-----------LIEVDQIYHLACPAS--P----IFYKYNPVKTIKTNVIGTLNMLGLAKRV  138 (259)
Q Consensus        94 ------------------~-----------~~~~d~vi~~a~~~~--~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~  138 (259)
                                        +           +.++|++||+||...  .    .....+++..+++|+.++..+++++...
T Consensus        81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~  160 (329)
T 3lt0_A           81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                              2           467999999999632  1    1223456789999999999999988654


Q ss_pred             C---CeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC-chHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCC
Q 025022          139 G---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS-CYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYGP  209 (259)
Q Consensus       139 ~---~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~-~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v~g~  209 (259)
                      -   .+||++||...+.                +..... .|+.+|.+.+.+.+.++.+    +++++..+.||.+..+
T Consensus       161 m~~~g~Iv~isS~~~~~----------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~  223 (329)
T 3lt0_A          161 MKPQSSIISLTYHASQK----------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR  223 (329)
T ss_dssp             EEEEEEEEEEECGGGTS----------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred             HhhCCeEEEEeCccccC----------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence            2   2899999986443                222233 7999999999999988754    5899999999998764

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.74  E-value=6.4e-18  Score=149.59  Aligned_cols=162  Identities=15%  Similarity=-0.000  Sum_probs=110.1

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC--------CCCcchhhhccCCCceeEeecccCccc----
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF--------TGSKDNLRKWIGHPRFELIRHDVTEPL----   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~--------~~~~~~~~~~~~~~~~~~~~~dl~~~~----   94 (259)
                      ...+++++++||||+|+||+++++.|+++|++ |++++|..        ....+.....+..... ...+|+.+.+    
T Consensus        14 ~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~-Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~D~~d~~~~~~   91 (613)
T 3oml_A           14 KLRYDGRVAVVTGAGAGLGREYALLFAERGAK-VVVNDLGGTHSGDGASQRAADIVVDEIRKAGG-EAVADYNSVIDGAK   91 (613)
T ss_dssp             -CCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEC--------------CHHHHHHHHHHTTC-CEEECCCCGGGHHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcccccccCCHHHHHHHHHHHHHhCC-eEEEEeCCHHHHHH
Confidence            34477899999999999999999999999998 88887621        1111111111111111 1236776654    


Q ss_pred             --------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCC
Q 025022           95 --------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVH  157 (259)
Q Consensus        95 --------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~  157 (259)
                              +.++|++|||||.....    ...++++..+++|+.++.++++++    ++.+. +||++||...+.     
T Consensus        92 ~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~-----  166 (613)
T 3oml_A           92 VIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIY-----  166 (613)
T ss_dssp             HHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHH-----
T ss_pred             HHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC-----
Confidence                    45799999999976542    233457789999999999999887    44555 999999986543     


Q ss_pred             CCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccc
Q 025022          158 PQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNT  206 (259)
Q Consensus       158 ~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v  206 (259)
                                 +......|+.+|.+.+.+.+.++.+.   |+++..+.|+.+
T Consensus       167 -----------~~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~  207 (613)
T 3oml_A          167 -----------GNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA  207 (613)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC--
T ss_pred             -----------CCCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC
Confidence                       22334679999999999999998764   799999999753

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.72  E-value=4.2e-17  Score=141.64  Aligned_cols=160  Identities=11%  Similarity=0.089  Sum_probs=120.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE-cCCCCC-------------Ccchhhhcc-CCCceeEeecccCccc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTG-------------SKDNLRKWI-GHPRFELIRHDVTEPL   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~-~r~~~~-------------~~~~~~~~~-~~~~~~~~~~dl~~~~   94 (259)
                      ..+++++||||+|+||.++++.|.++|...|+++ .|+...             ..+..+++. ...++.++.+|++|.+
T Consensus       249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~  328 (525)
T 3qp9_A          249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE  328 (525)
T ss_dssp             CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence            3578999999999999999999999999856666 776322             111111111 1247889999999987


Q ss_pred             -----------cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHhC-----C-eEEEEecceeecC
Q 025022           95 -----------LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVYGD  153 (259)
Q Consensus        95 -----------~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~-~~i~~Ss~~~~~~  153 (259)
                                 ..++|+|||+||.....    ....+.+..+++|+.++.++.+++....     . +||++||...+. 
T Consensus       329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~-  407 (525)
T 3qp9_A          329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIW-  407 (525)
T ss_dssp             HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTT-
T ss_pred             HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcC-
Confidence                       25689999999976542    2234567889999999999999998765     5 999999986543 


Q ss_pred             CCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccc
Q 025022          154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT  206 (259)
Q Consensus       154 ~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v  206 (259)
                                     .......|+.+|...+.+.+.+. ..|+++++|.||.+
T Consensus       408 ---------------g~~g~~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~  444 (525)
T 3qp9_A          408 ---------------GGAGQGAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPW  444 (525)
T ss_dssp             ---------------CCTTCHHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCB
T ss_pred             ---------------CCCCCHHHHHHHHHHHHHHHHHH-hCCCCEEEEECCcc
Confidence                           22334679999999998866553 35899999999988

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.66  E-value=1.4e-15  Score=126.84  Aligned_cols=166  Identities=13%  Similarity=-0.037  Sum_probs=117.8

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHh-cCCCeEEEEcCCCCCCcch-----------hhhcc--CCCceeEeecccCccc--
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDN-----------LRKWI--GHPRFELIRHDVTEPL--   94 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~~-----------~~~~~--~~~~~~~~~~dl~~~~--   94 (259)
                      .+|++|||||++.||.++++.|.+ .|++ |+++.|+.......           +....  ....+..+.+|+++.+  
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~-Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v  138 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGAD-TLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR  138 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCCE-EEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence            478999999999999999999999 9998 88888765443321           11111  1245778999999987  


Q ss_pred             ----------c-CCcCEEEEccCCC-------------Cc-------------------------cccccChhHHHHHhh
Q 025022           95 ----------L-IEVDQIYHLACPA-------------SP-------------------------IFYKYNPVKTIKTNV  125 (259)
Q Consensus        95 ----------~-~~~d~vi~~a~~~-------------~~-------------------------~~~~~~~~~~~~~n~  125 (259)
                                + +++|++||+||..             ..                         .....+++..+++|.
T Consensus       139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~  218 (422)
T 3s8m_A          139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG  218 (422)
T ss_dssp             HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence                      6 8899999999862             00                         011233455666666


Q ss_pred             hhHH-HHHHHHHHhC-----CeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CC
Q 025022          126 IGTL-NMLGLAKRVG-----ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GI  196 (259)
Q Consensus       126 ~~~~-~l~~~~~~~~-----~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~  196 (259)
                      .+.. .+++++....     .++|++||.......              +......|+.+|.+.+.+.+.++.+.   |+
T Consensus       219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~--------------p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GI  284 (422)
T 3s8m_A          219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEITW--------------PIYWHGALGKAKVDLDRTAQRLNARLAKHGG  284 (422)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGH--------------HHHTSHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccC--------------CCccchHHHHHHHHHHHHHHHHHHHhCccCE
Confidence            6654 5666654432     289999997633210              11122579999999999999988764   89


Q ss_pred             cEEEEEeccccCCCC
Q 025022          197 EIRIARIFNTYGPRM  211 (259)
Q Consensus       197 ~~~~lr~~~v~g~~~  211 (259)
                      ++..+.||.+-.+..
T Consensus       285 RVNaVaPG~i~T~~~  299 (422)
T 3s8m_A          285 GANVAVLKSVVTQAS  299 (422)
T ss_dssp             EEEEEEECCCCCTTG
T ss_pred             EEEEEEcCCCcChhh
Confidence            999999999987753

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.64  E-value=7.6e-15  Score=121.35  Aligned_cols=166  Identities=13%  Similarity=-0.001  Sum_probs=119.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHh-cCCCeEEEEcCCCCCCcc-----------hhhhcc--CCCceeEeecccCccc-
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKD-----------NLRKWI--GHPRFELIRHDVTEPL-   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~-~g~~~V~~~~r~~~~~~~-----------~~~~~~--~~~~~~~~~~dl~~~~-   94 (259)
                      ..+|+++||||++.||.++++.|++ .|++ |+++.++......           .+....  ....+..+.+|+++.+ 
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~-Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~  123 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGAD-TLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI  123 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCCE-EEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCCE-EEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence            4578999999999999999999999 9998 8888775543221           111111  1246778999999987 


Q ss_pred             -----------cCCcCEEEEccCCCC-------------c-------------------------cccccChhHHHHHhh
Q 025022           95 -----------LIEVDQIYHLACPAS-------------P-------------------------IFYKYNPVKTIKTNV  125 (259)
Q Consensus        95 -----------~~~~d~vi~~a~~~~-------------~-------------------------~~~~~~~~~~~~~n~  125 (259)
                                 ++++|++||+||...             .                         ....++++..+++|.
T Consensus       124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~  203 (405)
T 3zu3_A          124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG  203 (405)
T ss_dssp             HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence                       678999999998641             0                         012234567778888


Q ss_pred             hhHH-HHHHHHHHhC-----CeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---h-C
Q 025022          126 IGTL-NMLGLAKRVG-----ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---H-G  195 (259)
Q Consensus       126 ~~~~-~l~~~~~~~~-----~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~-~  195 (259)
                      .+.. .+++++....     .++|.+||.......              +......|+.+|.+.+.+.+.++.+   + |
T Consensus       204 ~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~--------------p~~~~~aY~AaKaal~~ltrsLA~Ela~~~G  269 (405)
T 3zu3_A          204 GEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITH--------------DIYWNGSIGAAKKDLDQKVLAIRESLAAHGG  269 (405)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGT--------------TTTTTSHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             hhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcC--------------CCccchHHHHHHHHHHHHHHHHHHHhCcccC
Confidence            7776 5666554322     389999997643210              2222367999999999999998876   4 8


Q ss_pred             CcEEEEEeccccCCC
Q 025022          196 IEIRIARIFNTYGPR  210 (259)
Q Consensus       196 ~~~~~lr~~~v~g~~  210 (259)
                      +++..+.||.+..+.
T Consensus       270 IRVNaVaPG~i~T~~  284 (405)
T 3zu3_A          270 GDARVSVLKAVVSQA  284 (405)
T ss_dssp             CEEEEEECCCCCCHH
T ss_pred             eEEEEEEeCCCcCch
Confidence            999999999887653

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.63  E-value=5.2e-15  Score=130.61  Aligned_cols=157  Identities=17%  Similarity=0.078  Sum_probs=116.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeeccc-Cccc---------cCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDV-TEPL---------LIE   97 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl-~~~~---------~~~   97 (259)
                      .+++++++||||++.||+++++.|+++|++ |++.++..  ..+..++.. ...++..+.+|+ .+.+         +.+
T Consensus       319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~-Vv~~~~~~--~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~  395 (604)
T 2et6_A          319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAK-VVVNDFKD--ATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGT  395 (604)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEECSSC--CHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSC
T ss_pred             ccCCCeEEEECcchHHHHHHHHHHHHCCCE-EEEEeCcc--HHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCC
Confidence            467899999999999999999999999998 88877532  111111111 123566678888 4433         578


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++|||||.....    ...++++..+++|+.++..+.+++.    +.+. +||++||...+.                
T Consensus       396 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~----------------  459 (604)
T 2et6_A          396 IDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIY----------------  459 (604)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS----------------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcc----------------
Confidence            99999999975432    2234577899999999999988764    3444 999999975432                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEec
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIF  204 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~  204 (259)
                      +......|+.+|.+...+.+.++.+   +|+++..|.|+
T Consensus       460 ~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG  498 (604)
T 2et6_A          460 GNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPH  498 (604)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCC
Confidence            2223367999999999999998876   48999999997

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.62  E-value=3.7e-15  Score=131.55  Aligned_cols=157  Identities=15%  Similarity=0.034  Sum_probs=111.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC--------CCcchhhhccCCCceeEeecccCccc-------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--------GSKDNLRKWIGHPRFELIRHDVTEPL-------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~--------~~~~~~~~~~~~~~~~~~~~dl~~~~-------   94 (259)
                      +++++++||||++.||+++++.|+++|++ |++.+++..        ...+.....+...+-. ..+|+.+..       
T Consensus         6 l~gkvalVTGas~GIG~a~A~~la~~Ga~-Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~-~~~d~~d~~~~~~~v~   83 (604)
T 2et6_A            6 FKDKVVIITGAGGGLGKYYSLEFAKLGAK-VVVNDLGGALNGQGGNSKAADVVVDEIVKNGGV-AVADYNNVLDGDKIVE   83 (604)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECC-----------CHHHHHHHHHHHTTCE-EEEECCCTTCHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEeCCccccccccchHHHHHHHHHHHhcCCe-EEEEcCCHHHHHHHHH
Confidence            67899999999999999999999999999 888876531        1111111111111111 123555443       


Q ss_pred             -----cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCC
Q 025022           95 -----LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 -----~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                           ++++|++|||||.....    ...++++..+++|+.++..+++++.    +.+. +||++||.....        
T Consensus        84 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~--------  155 (604)
T 2et6_A           84 TAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLY--------  155 (604)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH--------
T ss_pred             HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC--------
Confidence                 57899999999975431    2234577899999999999887763    4454 999999975432        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEec
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIF  204 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~  204 (259)
                              +......|+.+|.+...+.+.++.+   +|+++..|.|+
T Consensus       156 --------~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg  194 (604)
T 2et6_A          156 --------GNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL  194 (604)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC
Confidence                    1123357999999999999999876   47999999996

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.60  E-value=1.4e-14  Score=138.52  Aligned_cols=196  Identities=17%  Similarity=0.101  Sum_probs=131.7

Q ss_pred             ccCCCEEEEEcCchh-hhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhh---hccC--CCceeEeecccCccc-------
Q 025022           29 FQSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLR---KWIG--HPRFELIRHDVTEPL-------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~-iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~---~~~~--~~~~~~~~~dl~~~~-------   94 (259)
                      .+++++++||||+|+ ||.++++.|+++|++ |+++ .|+.....+..+   ....  ..++.++.+|+++.+       
T Consensus       672 ~l~gKvaLVTGASsGgIG~aIA~~La~~GA~-Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~  750 (1887)
T 2uv8_A          672 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAK-VVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIE  750 (1887)
T ss_dssp             CCTTCEEEEESCCSSSHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHHCCCE-EEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHH
Confidence            356789999999998 999999999999998 8877 454322211111   1111  246888999999987       


Q ss_pred             ---cC--------CcCEEEEccCCCCcc-c----c--ccChhHHHHHhhhhHHHHHHHHHHh------CC-eEEEEecce
Q 025022           95 ---LI--------EVDQIYHLACPASPI-F----Y--KYNPVKTIKTNVIGTLNMLGLAKRV------GA-RILLTSTSE  149 (259)
Q Consensus        95 ---~~--------~~d~vi~~a~~~~~~-~----~--~~~~~~~~~~n~~~~~~l~~~~~~~------~~-~~i~~Ss~~  149 (259)
                         ..        ++|++|||||..... .    .  .++++..+++|+.++..++++++..      +. +||++||..
T Consensus       751 ~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~a  830 (1887)
T 2uv8_A          751 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH  830 (1887)
T ss_dssp             HHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCT
T ss_pred             HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChH
Confidence               12        599999999976432 1    1  2346788999999999999887432      22 899999975


Q ss_pred             eecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH-HHHHHHHhC--CcEEEEEeccccCCCCCCCCccHHHHHHHHH
Q 025022          150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL-MFDYHRQHG--IEIRIARIFNTYGPRMNIDDGRVVSNFIAQA  226 (259)
Q Consensus       150 ~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~~--~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~  226 (259)
                      .+.                +  ....|+.+|.+.+.+ .+.++++.+  ++++.+.||++.+....... ......    
T Consensus       831 g~~----------------g--g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~-~~~~~~----  887 (1887)
T 2uv8_A          831 GTF----------------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-NIIAEG----  887 (1887)
T ss_dssp             TCS----------------S--CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----C-CTTHHH----
T ss_pred             hcc----------------C--CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccc-hhHHHH----
Confidence            332                1  235699999999998 666665443  89999999999853211000 011111    


Q ss_pred             HcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          227 IRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ....++          .+...+|+|+++++++
T Consensus       888 ~~~~pl----------r~~sPEEVA~avlfLa  909 (1887)
T 2uv8_A          888 IEKMGV----------RTFSQKEMAFNLLGLL  909 (1887)
T ss_dssp             HHTTSC----------CCEEHHHHHHHHHGGG
T ss_pred             HHhcCC----------CCCCHHHHHHHHHHHh
Confidence            111111          2347899999998876

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.57  E-value=6.5e-14  Score=117.58  Aligned_cols=166  Identities=10%  Similarity=-0.107  Sum_probs=116.1

Q ss_pred             cCCCEEEEEcCchhhhHH--HHHHHHhcCCCeEEEEcCCCCCCc-----------chhhhcc--CCCceeEeecccCccc
Q 025022           30 QSNMRILVTGGAGFIGSH--LVDKLMENEKNEVIVVDNYFTGSK-----------DNLRKWI--GHPRFELIRHDVTEPL   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~--l~~~L~~~g~~~V~~~~r~~~~~~-----------~~~~~~~--~~~~~~~~~~dl~~~~   94 (259)
                      ..+|+++||||++.||.+  +++.|.++|+. |+++.|+.....           +.+++..  ....+..+.+|+++.+
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~-Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~  136 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAH-TIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE  136 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCE-EEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCE-EEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence            457899999999999999  99999999998 888887654322           2222211  1246788999999987


Q ss_pred             ------------cCCcCEEEEccCCC-------------Ccc-------------------------ccccChhHHHHHh
Q 025022           95 ------------LIEVDQIYHLACPA-------------SPI-------------------------FYKYNPVKTIKTN  124 (259)
Q Consensus        95 ------------~~~~d~vi~~a~~~-------------~~~-------------------------~~~~~~~~~~~~n  124 (259)
                                  ++++|++||+||..             ...                         ....+.+..+++|
T Consensus       137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn  216 (418)
T 4eue_A          137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM  216 (418)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence                        56899999999864             000                         0122344556666


Q ss_pred             hhhHH-HHHHHHHHhC-----CeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH----h
Q 025022          125 VIGTL-NMLGLAKRVG-----ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ----H  194 (259)
Q Consensus       125 ~~~~~-~l~~~~~~~~-----~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~  194 (259)
                      ..+.. .+++++....     .++|.+||......              .+......|+.+|.+.+.+.+.++.+    +
T Consensus       217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~--------------~p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~  282 (418)
T 4eue_A          217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRT--------------YKIYREGTIGIAKKDLEDKAKLINEKLNRVI  282 (418)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGG--------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCC--------------CCccccHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            65554 5556555433     28999998753321              02223378999999999999988765    5


Q ss_pred             CCcEEEEEeccccCCC
Q 025022          195 GIEIRIARIFNTYGPR  210 (259)
Q Consensus       195 ~~~~~~lr~~~v~g~~  210 (259)
                      |+++.++.||.+..+.
T Consensus       283 GIrVN~V~PG~v~T~~  298 (418)
T 4eue_A          283 GGRAFVSVNKALVTKA  298 (418)
T ss_dssp             SCEEEEEECCCCCCHH
T ss_pred             CeEEEEEECCcCcChh
Confidence            7999999999887653

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.55  E-value=1.9e-14  Score=130.65  Aligned_cols=162  Identities=17%  Similarity=0.153  Sum_probs=121.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHH-hcCCCeEEEEcCCCCCC---cchhhhcc-CCCceeEeecccCccc-----------
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGS---KDNLRKWI-GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~---~~~~~~~~-~~~~~~~~~~dl~~~~-----------   94 (259)
                      .+++++||||+|.||+++++.|. ++|.+.|+++.|+....   .+..+++. ...++.++.+|+++.+           
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~  608 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPD  608 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            57899999999999999999999 78987688888863322   22222221 1356889999999987           


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ..++|+|||+||.....    ...++++..+++|+.++.++.+++... .+||++||...+.                ..
T Consensus       609 ~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~-l~iV~~SS~ag~~----------------g~  671 (795)
T 3slk_A          609 EHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD-VALVLFSSVSGVL----------------GS  671 (795)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT-SEEEEEEETHHHH----------------TC
T ss_pred             hCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEccHHhcC----------------CC
Confidence            12689999999976542    223456788999999999999988322 2999999986443                22


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR  210 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~  210 (259)
                      .....|+.+|...+.+.++.+ ..|++++.+.||.+-.++
T Consensus       672 ~g~~~YaAaka~~~alA~~~~-~~Gi~v~sI~pG~v~t~g  710 (795)
T 3slk_A          672 GGQGNYAAANSFLDALAQQRQ-SRGLPTRSLAWGPWAEHG  710 (795)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHH-HTTCCEEEEEECCCSCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHH-HcCCeEEEEECCeECcch
Confidence            334679999998888877664 469999999999887654

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.55  E-value=1.1e-13  Score=132.25  Aligned_cols=159  Identities=19%  Similarity=0.140  Sum_probs=114.2

Q ss_pred             cCCCEEEEEcCchh-hhHHHHHHHHhcCCCeEEEEc-CCCCCCcc---hhhhccC--CCceeEeecccCccc--------
Q 025022           30 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVVD-NYFTGSKD---NLRKWIG--HPRFELIRHDVTEPL--------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~-iG~~l~~~L~~~g~~~V~~~~-r~~~~~~~---~~~~~~~--~~~~~~~~~dl~~~~--------   94 (259)
                      +++++++||||+|+ ||.++++.|+++|++ |++++ |+.....+   .+...+.  ..++.++.+|+++.+        
T Consensus       650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA~-VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~  728 (1878)
T 2uv9_A          650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAK-VIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY  728 (1878)
T ss_dssp             CTTCEEEEESCCTTSHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHCCCE-EEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence            56789999999999 999999999999998 88875 43222111   1111111  246888999999977        


Q ss_pred             --cC------CcCEEEEccCCCCcc-c-c-----ccChhHHHHHhhhhHHHHHHHHH--Hh----CC-eEEEEecceeec
Q 025022           95 --LI------EVDQIYHLACPASPI-F-Y-----KYNPVKTIKTNVIGTLNMLGLAK--RV----GA-RILLTSTSEVYG  152 (259)
Q Consensus        95 --~~------~~d~vi~~a~~~~~~-~-~-----~~~~~~~~~~n~~~~~~l~~~~~--~~----~~-~~i~~Ss~~~~~  152 (259)
                        ..      ++|+|||+||..... . .     ..+++..+++|+.++..++++++  ..    +. +||++||...+.
T Consensus       729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~  808 (1878)
T 2uv9_A          729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTF  808 (1878)
T ss_dssp             HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSS
T ss_pred             HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhcc
Confidence              12      599999999975432 1 1     23467889999999998887642  21    22 899999975332


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH-h--CCcEEEEEecccc
Q 025022          153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ-H--GIEIRIARIFNTY  207 (259)
Q Consensus       153 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~--~~~~~~lr~~~v~  207 (259)
                      .                  ....|+.+|.+.+.+.+.+..+ .  .++++.+.||++-
T Consensus       809 g------------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~  848 (1878)
T 2uv9_A          809 G------------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTR  848 (1878)
T ss_dssp             S------------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBC
T ss_pred             C------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccee
Confidence            1                  1246999999999987765433 1  3899999999987

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.8e-14  Score=132.91  Aligned_cols=161  Identities=19%  Similarity=0.122  Sum_probs=115.2

Q ss_pred             ccCCCEEEEEcCchh-hhHHHHHHHHhcCCCeEEEE-cCCCCCCcchhhhc---cC--CCceeEeecccCccc-------
Q 025022           29 FQSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKW---IG--HPRFELIRHDVTEPL-------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~-iG~~l~~~L~~~g~~~V~~~-~r~~~~~~~~~~~~---~~--~~~~~~~~~dl~~~~-------   94 (259)
                      .+++++++||||+|+ ||.++++.|+++|++ |+++ .|+.....+..++.   ..  ..++.++.+|+++.+       
T Consensus       473 sL~GKvALVTGASgGGIGrAIAr~LA~~GA~-VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe  551 (1688)
T 2pff_A          473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAK-VVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIE  551 (1688)
T ss_dssp             CCCSCCEEECSCSSSSTHHHHHHHHHHHTCE-EEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHH
T ss_pred             ccCCCEEEEECCChHHHHHHHHHHHHHCcCE-EEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHH
Confidence            356789999999998 999999999999998 7777 55443333222222   11  236888999999987       


Q ss_pred             ---cC--------CcCEEEEccCCCCcc-c----c--ccChhHHHHHhhhhHHHHHHHHHH--h----CC-eEEEEecce
Q 025022           95 ---LI--------EVDQIYHLACPASPI-F----Y--KYNPVKTIKTNVIGTLNMLGLAKR--V----GA-RILLTSTSE  149 (259)
Q Consensus        95 ---~~--------~~d~vi~~a~~~~~~-~----~--~~~~~~~~~~n~~~~~~l~~~~~~--~----~~-~~i~~Ss~~  149 (259)
                         ..        ++|++||+||..... .    .  .++++..+++|+.++..++++++.  .    +. +||++||..
T Consensus       552 ~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiA  631 (1688)
T 2pff_A          552 FIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH  631 (1688)
T ss_dssp             HHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCT
T ss_pred             HHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChH
Confidence               12        599999999975432 1    1  234577889999999999988732  1    22 899999964


Q ss_pred             eecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH-HHHHHHHhC--CcEEEEEeccccC
Q 025022          150 VYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL-MFDYHRQHG--IEIRIARIFNTYG  208 (259)
Q Consensus       150 ~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~~--~~~~~lr~~~v~g  208 (259)
                      ...                +  ....|+.+|++.+.+ .+.++++.+  ++++.+.||++.+
T Consensus       632 G~~----------------G--g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~T  675 (1688)
T 2pff_A          632 GTF----------------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRG  675 (1688)
T ss_dssp             TTS----------------S--CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCC
T ss_pred             hcc----------------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcC
Confidence            322                1  235699999999998 444444332  8888899998875

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.33  E-value=7.5e-12  Score=125.19  Aligned_cols=162  Identities=13%  Similarity=0.076  Sum_probs=114.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc---chhhhcc-CCCceeEeecccCccc-----------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWI-GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~~~-~~~~~~~~~~dl~~~~-----------   94 (259)
                      ..+++++||||+|.||.++++.|+++|++.|+++.|+.....   +..+++. ...++..+.+|+++.+           
T Consensus      1882 ~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~ 1961 (2512)
T 2vz8_A         1882 PPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQ 1961 (2512)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence            357899999999999999999999999986777777654432   1122211 1246788899999987           


Q ss_pred             cCCcCEEEEccCCCCc----cccccChhHHHHHhhhhHHHHHHHHHHhC--C-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           95 LIEVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ..++|++||+||....    +...++++..+++|+.++.++.+++...-  . +||++||.....               
T Consensus      1962 ~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~--------------- 2026 (2512)
T 2vz8_A         1962 LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGR--------------- 2026 (2512)
T ss_dssp             HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHT---------------
T ss_pred             cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcC---------------
Confidence            4579999999997543    12345677889999999999988876642  2 999999986443               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG  208 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g  208 (259)
                       .......|+.+|...+.+.+... ..|++...+..+.+-+
T Consensus      2027 -g~~g~~~Y~aaKaal~~l~~~rr-~~Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A         2027 -GNAGQANYGFANSAMERICEKRR-HDGLPGLAVQWGAIGD 2065 (2512)
T ss_dssp             -TCTTCHHHHHHHHHHHHHHHHHH-HTTSCCCEEEECCBCT
T ss_pred             -CCCCcHHHHHHHHHHHHHHHHHH-HCCCcEEEEEccCcCC
Confidence             11233579999999999988664 4588888888776543

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.29  E-value=3.7e-11  Score=120.52  Aligned_cols=196  Identities=13%  Similarity=0.106  Sum_probs=124.7

Q ss_pred             cCCCEEEEEcCchh-hhHHHHHHHHhcCCCeEEEEcCCCCCC----cchhhhccC--CCceeEeecccCccc--------
Q 025022           30 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVVDNYFTGS----KDNLRKWIG--HPRFELIRHDVTEPL--------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~-iG~~l~~~L~~~g~~~V~~~~r~~~~~----~~~~~~~~~--~~~~~~~~~dl~~~~--------   94 (259)
                      +++|+++||||++. ||.++++.|++.|++ |++.+|+....    .+.+...+.  ..++..+.+|+++.+        
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~-Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDGGAT-VIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHTTCE-EEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHCCCE-EEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence            67899999999999 999999999999999 88888765431    111222222  235778899999876        


Q ss_pred             --------cCCcCEEEEccCCC----Cc-----cccccCh----hHHHHHhhhhHHHHHHHHHH----hCC----eEEEE
Q 025022           95 --------LIEVDQIYHLACPA----SP-----IFYKYNP----VKTIKTNVIGTLNMLGLAKR----VGA----RILLT  145 (259)
Q Consensus        95 --------~~~~d~vi~~a~~~----~~-----~~~~~~~----~~~~~~n~~~~~~l~~~~~~----~~~----~~i~~  145 (259)
                              ++++|++|||||..    ..     .....++    +..+++|+.++..+++.+..    .+.    .+|..
T Consensus      2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~ 2292 (3089)
T 3zen_D         2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLP 2292 (3089)
T ss_dssp             HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred             HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEE
Confidence                    24699999999971    10     0111223    34488899988888777643    222    22222


Q ss_pred             ecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH--h--CCcEEEEEeccccCCCCCCCCccHHHH
Q 025022          146 STSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ--H--GIEIRIARIFNTYGPRMNIDDGRVVSN  221 (259)
Q Consensus       146 Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~--~~~~~~lr~~~v~g~~~~~~~~~~~~~  221 (259)
                      +|.. .+                .......|+.||.+.+.+.+.++.+  .  +++++.+.||++-+........ ....
T Consensus      2293 ~ss~-~g----------------~~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~-~~~~ 2354 (3089)
T 3zen_D         2293 GSPN-RG----------------MFGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQND-AIVS 2354 (3089)
T ss_dssp             ECSS-TT----------------SCSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTT-TTHH
T ss_pred             CCcc-cc----------------cCCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccch-hHHH
Confidence            2211 11                1112246999999999999999888  3  4788889998887543211111 1111


Q ss_pred             HHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          222 FIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          .......          .....+|+|.++++++
T Consensus      2355 ----~~~~~~~----------r~~~PeEIA~avlfLa 2377 (3089)
T 3zen_D         2355 ----AVEEAGV----------TTYTTDEMAAMLLDLC 2377 (3089)
T ss_dssp             ----HHGGGSC----------BCEEHHHHHHHHHHTT
T ss_pred             ----HHHhcCC----------CCCCHHHHHHHHHHHh
Confidence                1111110          1127899999999876

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=99.10  E-value=2.2e-10  Score=93.83  Aligned_cols=165  Identities=12%  Similarity=0.074  Sum_probs=103.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCC------CeEEEEcCC----CCCCcchhhhccCCCceeEeecccC---c--ccc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNY----FTGSKDNLRKWIGHPRFELIRHDVT---E--PLL   95 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~----~~~~~~~~~~~~~~~~~~~~~~dl~---~--~~~   95 (259)
                      +.|||+|+||+|++|++++..|+..|.      .+|+++++.    ..+.......+.. ..+.+ ..|+.   +  ..+
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~-~~~~~-~~~i~~~~~~~~al   81 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDD-CAFPL-LAGMTAHADPMTAF   81 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHT-TTCTT-EEEEEEESSHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhh-hcccc-cCcEEEecCcHHHh
Confidence            347999999999999999999999885      248888775    2111100011111 00001 11221   1  127


Q ss_pred             CCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C--eEEEEeccee---ecCCCCCCCCCCCcCCCCC
Q 025022           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTSEV---YGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~~Ss~~~---~~~~~~~~~~e~~~~~~~~  169 (259)
                      .++|+|||+||....  ...+..+++..|+..++++++.+.+.+ .  +||++|...-   +--...   .+       .
T Consensus        82 ~~aD~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~---~~-------~  149 (329)
T 1b8p_A           82 KDADVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKS---AP-------S  149 (329)
T ss_dssp             TTCSEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHT---CT-------T
T ss_pred             CCCCEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHH---cC-------C
Confidence            899999999996542  234566788999999999999999884 4  8999886321   100000   00       1


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGP  209 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~  209 (259)
                      .++...|+.++....++...+++..+++...++...++|.
T Consensus       150 ~p~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~  189 (329)
T 1b8p_A          150 LPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGN  189 (329)
T ss_dssp             SCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBC
T ss_pred             CCHHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEec
Confidence            1122347777777778878888888877666665556663

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.06  E-value=9.6e-10  Score=76.05  Aligned_cols=91  Identities=22%  Similarity=0.143  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcC-CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g-~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      .+|+|+|+|+ |++|+++++.|.+.| ++ |++++|+...    .+... ..++..+.+|+.+.+     +.++|+||++
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~-v~~~~r~~~~----~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYS-VTVADHDLAA----LAVLN-RMGVATKQVDAKDEAGLAKALGGFDAVISA   76 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEE-EEEEESCHHH----HHHHH-TTTCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCce-EEEEeCCHHH----HHHHH-hCCCcEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            3579999999 999999999999999 66 9999885332    22211 246778889998765     6789999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEe
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~S  146 (259)
                      ++..                  ....+++++.+.+++++.+|
T Consensus        77 ~~~~------------------~~~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           77 APFF------------------LTPIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             SCGG------------------GHHHHHHHHHHTTCEEECCC
T ss_pred             CCch------------------hhHHHHHHHHHhCCCEEEec
Confidence            8521                  13578889999998555444

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.94  E-value=2.6e-09  Score=87.29  Aligned_cols=111  Identities=14%  Similarity=-0.003  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCCCCCcchhhhccC---CCceeEeecccCc--cccCCcCEEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTE--PLLIEVDQIYH  103 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~dl~~--~~~~~~d~vi~  103 (259)
                      +.|||+|+||+|++|..++..|++.|  .+ |++++++..  .....++..   ...+..+.+ .++  ..+.++|+|||
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~e-v~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~-t~d~~~al~gaDvVi~   82 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSV-LHLYDVVNA--PGVTADISHMDTGAVVRGFLG-QQQLEAALTGMDLIIV   82 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEE-EEEEESSSH--HHHHHHHHTSCSSCEEEEEES-HHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCE-EEEEeCCCc--HhHHHHhhcccccceEEEEeC-CCCHHHHcCCCCEEEE
Confidence            35799999999999999999999988  55 888886543  111111111   112222111 112  22789999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEec
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss  147 (259)
                      +||....  .......++..|+.+++++++.+.+.+. .+|+++|
T Consensus        83 ~ag~~~~--~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S  125 (326)
T 1smk_A           83 PAGVPRK--PGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS  125 (326)
T ss_dssp             CCCCCCC--SSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             cCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence            9996542  2233456788999999999999999887 5666665

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.91  E-value=5e-09  Score=84.75  Aligned_cols=111  Identities=14%  Similarity=0.046  Sum_probs=74.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcC--CCCCCcc---hhhhcc-CCCceeEeecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKD---NLRKWI-GHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r--~~~~~~~---~~~~~~-~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |||+|+||+|++|++++..|+..+.. +++++++  .......   .+.... ....+.+...|  ...+.++|+|||+|
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~--~~a~~~aDvVi~~a   78 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG--YEDTAGSDVVVITA   78 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC--GGGGTTCSEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCC--HHHhCCCCEEEEcC
Confidence            68999999999999999999988753 3777776  3211110   011100 01233333332  33488999999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEec
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss  147 (259)
                      |....  .......++..|+..++++++.+.+.+. .+|+++|
T Consensus        79 g~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S  119 (303)
T 1o6z_A           79 GIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (303)
T ss_dssp             CCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            86532  2334567789999999999999999877 6666655

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.87  E-value=9.5e-09  Score=83.53  Aligned_cols=113  Identities=11%  Similarity=0.090  Sum_probs=73.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcC--CCCCCcc---hhhhccC--CCceeEeecc-cCccccCCcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKD---NLRKWIG--HPRFELIRHD-VTEPLLIEVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r--~~~~~~~---~~~~~~~--~~~~~~~~~d-l~~~~~~~~d~vi~  103 (259)
                      |||+||||+|++|++++..|+..+.. ++.++++  +......   .+.....  ...+++...+ -....++++|+|||
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            68999999999999999999988753 3777766  2211100   0111100  0123333322 12334889999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEec
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss  147 (259)
                      +||...  ........++..|+.+++++++++++.+..+++++|
T Consensus        81 ~Ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~vlv~S  122 (313)
T 1hye_A           81 TSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVIT  122 (313)
T ss_dssp             CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECS
T ss_pred             CCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence            999654  223445678899999999999999887553444444

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=98.80  E-value=1.9e-07  Score=76.83  Aligned_cols=164  Identities=12%  Similarity=-0.038  Sum_probs=99.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHH-hcCCCeEEEEcCCCCCCcch-----------hhhcc--CCCceeEeecccCccc-
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGSKDN-----------LRKWI--GHPRFELIRHDVTEPL-   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~-~~g~~~V~~~~r~~~~~~~~-----------~~~~~--~~~~~~~~~~dl~~~~-   94 (259)
                      ..+|++|||||++.+|.+.+..|. ..|.. ++++.+.......+           +.+..  .......+.+|+.+.+ 
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~-vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~  126 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAA-TIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI  126 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCE-EEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCC-EEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence            456899999999999999999998 56887 77777654433221           11111  1246788999999977 


Q ss_pred             -----------cCCcCEEEEccCCCCccccc------------------------cC-h-----hHHHHHhhhhHH----
Q 025022           95 -----------LIEVDQIYHLACPASPIFYK------------------------YN-P-----VKTIKTNVIGTL----  129 (259)
Q Consensus        95 -----------~~~~d~vi~~a~~~~~~~~~------------------------~~-~-----~~~~~~n~~~~~----  129 (259)
                                 ++++|++||+++........                        .+ .     +...+-++..+.    
T Consensus       127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg  206 (401)
T 4ggo_A          127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG  206 (401)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence                       78999999999865311000                        00 0     000011112222    


Q ss_pred             -----HHHHHHHHhCC-----eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh-CCcE
Q 025022          130 -----NMLGLAKRVGA-----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIEI  198 (259)
Q Consensus       130 -----~l~~~~~~~~~-----~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~  198 (259)
                           ..+.+....+.     +++-+|+...-.          .|    |.+....++.+|...|...+.++.+. ++++
T Consensus       207 ~s~~s~w~~al~~a~lla~G~siva~SYiGse~----------t~----P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a  272 (401)
T 4ggo_A          207 GEDWERWIKQLSKEGLLEEGCITLAYSYIGPEA----------TQ----ALYRKGTIGKAKEHLEATAHRLNKENPSIRA  272 (401)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGG----------GH----HHHTTSHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred             hhHHHHHHHHHHhhhcccCCceEEEEeccCcce----------ee----cCCCccHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence                 23444444443     777777643110          00    22222468999999999999998876 4555


Q ss_pred             EEEEeccccC
Q 025022          199 RIARIFNTYG  208 (259)
Q Consensus       199 ~~lr~~~v~g  208 (259)
                      .++-++.+..
T Consensus       273 ~v~v~~a~vT  282 (401)
T 4ggo_A          273 FVSVNKGLVT  282 (401)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEEcCcccc
Confidence            5555554443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=98.74  E-value=3.6e-09  Score=85.07  Aligned_cols=79  Identities=8%  Similarity=0.117  Sum_probs=57.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~  103 (259)
                      .+++++++||||+|++|+++++.|++.|++ |+++.|+..+..+..+......++.++.+|+++.+     ..++|+|||
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn  194 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT  194 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEE
Confidence            357899999999999999999999999998 99998864332222211111024567778887754     567999999


Q ss_pred             ccCCC
Q 025022          104 LACPA  108 (259)
Q Consensus       104 ~a~~~  108 (259)
                      ++|..
T Consensus       195 ~ag~g  199 (287)
T 1lu9_A          195 AGAIG  199 (287)
T ss_dssp             CCCTT
T ss_pred             CCCcc
Confidence            99753

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.58  E-value=4e-07  Score=73.88  Aligned_cols=109  Identities=15%  Similarity=0.070  Sum_probs=73.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccCC----CceeEeec--ccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRH--DVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~--dl~~~~~~~~d~vi~~a  105 (259)
                      |||.|+||+|++|..++..|+..|. .+|++++++.   .......+..    .++....+  |+ +..+.++|+||+++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~---~~~~a~dL~~~~~~~~l~~~~~t~d~-~~a~~~aDvVvi~a   76 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH---TPGVAADLSHIETRATVKGYLGPEQL-PDCLKGCDVVVIPA   76 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS---HHHHHHHHTTSSSSCEEEEEESGGGH-HHHHTTCSEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc---cHHHHHHHhccCcCceEEEecCCCCH-HHHhCCCCEEEECC
Confidence            6899999999999999999998873 3489998865   1111111111    12222211  22 11278999999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      |....  ......+.+..|+...+.+++.+.+...  ++|++|-
T Consensus        77 g~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN  118 (314)
T 1mld_A           77 GVPRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (314)
T ss_dssp             SCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CcCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence            87542  2334456788999999999999988765  7777654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.55  E-value=3.6e-07  Score=65.15  Aligned_cols=69  Identities=22%  Similarity=0.259  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~  104 (259)
                      ++++|+|+|+ |++|+++++.|.++|++ |+++++++.    ..+... ..++.++.+|.++.+      ..++|+||.+
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~-V~~id~~~~----~~~~~~-~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGKK-VLAVDKSKE----KIELLE-DEGFDAVIADPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCC-EEEEESCHH----HHHHHH-HTTCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCe-EEEEECCHH----HHHHHH-HCCCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence            4578999997 99999999999999999 999988533    222211 135788899998876      4579999987


Q ss_pred             cC
Q 025022          105 AC  106 (259)
Q Consensus       105 a~  106 (259)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.51  E-value=2.7e-07  Score=70.90  Aligned_cols=73  Identities=21%  Similarity=0.345  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC----------------chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc
Q 025022           31 SNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL   94 (259)
Q Consensus        31 ~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~   94 (259)
                      .+|+|+||||                ||.+|.++++.|+++|+. |+++.|+......      ...+++.+..+-.+.-
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~-V~lv~~~~~~~~~------~~~~~~~~~v~s~~em   74 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYE-VCLITTKRALKPE------PHPNLSIREITNTKDL   74 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCE-EEEEECTTSCCCC------CCTTEEEEECCSHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCE-EEEEeCCcccccc------CCCCeEEEEHhHHHHH
Confidence            4799999999                999999999999999999 8888885432110      0124555544332211


Q ss_pred             -------cCCcCEEEEccCCCCc
Q 025022           95 -------LIEVDQIYHLACPASP  110 (259)
Q Consensus        95 -------~~~~d~vi~~a~~~~~  110 (259)
                             +.++|++||+||....
T Consensus        75 ~~~v~~~~~~~Dili~aAAvsD~   97 (232)
T 2gk4_A           75 LIEMQERVQDYQVLIHSMAVSDY   97 (232)
T ss_dssp             HHHHHHHGGGCSEEEECSBCCSE
T ss_pred             HHHHHHhcCCCCEEEEcCccccc
Confidence                   5789999999997654

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.51  E-value=2.5e-07  Score=78.86  Aligned_cols=105  Identities=18%  Similarity=0.211  Sum_probs=68.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      |++++|+|+| +|++|+++++.|++.|++ |++.+|+..+.. .+...+  .++..+.+|+.+.+     +.++|+|||+
T Consensus         1 M~~k~VlViG-aG~iG~~ia~~L~~~G~~-V~v~~R~~~~a~-~la~~~--~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            1 MATKSVLMLG-SGFVTRPTLDVLTDSGIK-VTVACRTLESAK-KLSAGV--QHSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             -CCCEEEEEC-CSTTHHHHHHHHHTTTCE-EEEEESSHHHHH-HTTTTC--TTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhCcCE-EEEEECCHHHHH-HHHHhc--CCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            4578999998 899999999999999987 888888532211 111111  24677888988754     5689999999


Q ss_pred             cCCCCccccccChhHHHHH--h-------hhhHHHHHHHHHHhCCeE
Q 025022          105 ACPASPIFYKYNPVKTIKT--N-------VIGTLNMLGLAKRVGARI  142 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~--n-------~~~~~~l~~~~~~~~~~~  142 (259)
                      ++.....  . -....++.  |       ......+++++++.|+++
T Consensus        76 a~~~~~~--~-i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~  119 (450)
T 1ff9_A           76 IPYTFHA--T-VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV  119 (450)
T ss_dssp             CC--CHH--H-HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEE
T ss_pred             Cccccch--H-HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeE
Confidence            9864211  0 01111221  1       124678889999988753

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.51  E-value=4.3e-07  Score=64.76  Aligned_cols=95  Identities=16%  Similarity=0.148  Sum_probs=63.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~  103 (259)
                      +++++|+|+|+ |.+|+.+++.|.+.|++ |++++++..    ..+... ......+.+|..+.+      ..++|+||+
T Consensus         4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~-v~~~d~~~~----~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~   76 (144)
T 2hmt_A            4 IKNKQFAVIGL-GRFGGSIVKELHRMGHE-VLAVDINEE----KVNAYA-SYATHAVIANATEENELLSLGIRNFEYVIV   76 (144)
T ss_dssp             --CCSEEEECC-SHHHHHHHHHHHHTTCC-CEEEESCHH----HHHTTT-TTCSEEEECCTTCHHHHHTTTGGGCSEEEE
T ss_pred             CcCCcEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCHH----HHHHHH-HhCCEEEEeCCCCHHHHHhcCCCCCCEEEE
Confidence            34678999998 99999999999999998 888887432    222111 124456777876654      457999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEec
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss  147 (259)
                      +++..        .    +.|.    .+++.+++.+. ++|..++
T Consensus        77 ~~~~~--------~----~~~~----~~~~~~~~~~~~~ii~~~~  105 (144)
T 2hmt_A           77 AIGAN--------I----QAST----LTTLLLKELDIPNIWVKAQ  105 (144)
T ss_dssp             CCCSC--------H----HHHH----HHHHHHHHTTCSEEEEECC
T ss_pred             CCCCc--------h----HHHH----HHHHHHHHcCCCeEEEEeC
Confidence            88531        0    1222    35566777776 6665554

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=98.50  E-value=2.6e-07  Score=70.82  Aligned_cols=70  Identities=20%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             ccCCCEEEEEcC----------------chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCc
Q 025022           29 FQSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE   92 (259)
Q Consensus        29 ~~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~   92 (259)
                      ++.+++|+||||                ||.+|.++++.|+++|+. |+++.++....   .     ..+++.  .|+.+
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~-V~l~~~~~~l~---~-----~~g~~~--~dv~~   73 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGAN-VTLVSGPVSLP---T-----PPFVKR--VDVMT   73 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCE-EEEEECSCCCC---C-----CTTEEE--EECCS
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCE-EEEEECCcccc---c-----CCCCeE--EccCc
Confidence            477899999999                699999999999999999 88877643211   0     113332  34443


Q ss_pred             cc---------cCCcCEEEEccCCCC
Q 025022           93 PL---------LIEVDQIYHLACPAS  109 (259)
Q Consensus        93 ~~---------~~~~d~vi~~a~~~~  109 (259)
                      ..         +.++|++||+||...
T Consensus        74 ~~~~~~~v~~~~~~~Dili~~Aav~d   99 (226)
T 1u7z_A           74 ALEMEAAVNASVQQQNIFIGCAAVAD   99 (226)
T ss_dssp             HHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred             HHHHHHHHHHhcCCCCEEEECCcccC
Confidence            33         568999999999764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.43  E-value=1.4e-06  Score=61.70  Aligned_cols=70  Identities=19%  Similarity=0.228  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~  104 (259)
                      .+|+|+|+|+ |++|+.+++.|.+.|++ |++++++.... +.+..   ..++..+.+|..+.+      ..++|+||++
T Consensus         3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~~-v~~~d~~~~~~-~~~~~---~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~   76 (140)
T 1lss_A            3 HGMYIIIAGI-GRVGYTLAKSLSEKGHD-IVLIDIDKDIC-KKASA---EIDALVINGDCTKIKTLEDAGIEDADMYIAV   76 (140)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHHHH-HHHHH---HCSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEECCHHHH-HHHHH---hcCcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence            3579999986 99999999999999988 98888743221 11221   114566777776543      4679999998


Q ss_pred             cC
Q 025022          105 AC  106 (259)
Q Consensus       105 a~  106 (259)
                      .+
T Consensus        77 ~~   78 (140)
T 1lss_A           77 TG   78 (140)
T ss_dssp             CS
T ss_pred             eC
Confidence            64

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.39  E-value=2.4e-07  Score=77.99  Aligned_cols=96  Identities=15%  Similarity=0.243  Sum_probs=66.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc-----cC--CcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-----LI--EVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~-----~~--~~d~  100 (259)
                      |++|+|+|+ |++|+.+++.|++.|.  ..|++.+|+..+.....+....  ..++..+.+|+++.+     +.  ++|+
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            368999998 9999999999999984  2488888864433222222111  135788899998865     33  4899


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEe
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~S  146 (259)
                      |||++++..                  ...++++|.+.+++++-++
T Consensus        80 Vin~ag~~~------------------~~~v~~a~l~~g~~vvD~a  107 (405)
T 4ina_A           80 VLNIALPYQ------------------DLTIMEACLRTGVPYLDTA  107 (405)
T ss_dssp             EEECSCGGG------------------HHHHHHHHHHHTCCEEESS
T ss_pred             EEECCCccc------------------ChHHHHHHHHhCCCEEEec
Confidence            999997421                  1357788888888665443

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=98.39  E-value=7.5e-07  Score=72.70  Aligned_cols=114  Identities=15%  Similarity=0.105  Sum_probs=73.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC-e-----EEEEcCCCCC-CcchhhhccC---CCceeEeecccCc-cccCCcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN-E-----VIVVDNYFTG-SKDNLRKWIG---HPRFELIRHDVTE-PLLIEVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~-~-----V~~~~r~~~~-~~~~~~~~~~---~~~~~~~~~dl~~-~~~~~~d~  100 (259)
                      .+||+||||+|+||++++..|...+.- +     ++++++.... ..+.....+.   .+-..-+..--.+ .++.++|+
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv   82 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV   82 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence            379999999999999999999887652 2     7777764310 1111111011   0111111111111 22789999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC---eEEEEec
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTST  147 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~~Ss  147 (259)
                      ||++||...  ....+..+.++.|...++.+++.+.+.+.   +++.+|-
T Consensus        83 VvitAg~pr--kpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN  130 (333)
T 5mdh_A           83 AILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN  130 (333)
T ss_dssp             EEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             EEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            999998653  22345667889999999999999998865   5776664

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.34  E-value=2.7e-06  Score=61.52  Aligned_cols=74  Identities=16%  Similarity=0.231  Sum_probs=54.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~  103 (259)
                      |..++++|+|+ |.+|+.+++.|.+.|++ |++++++.....+.+.... ..++.++.+|.++.+      ..++|.||.
T Consensus         1 ~~~~~vlI~G~-G~vG~~la~~L~~~g~~-V~vid~~~~~~~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (153)
T 1id1_A            1 HRKDHFIVCGH-SILAINTILQLNQRGQN-VTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CCCSCEEEECC-SHHHHHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCCC-EEEEECCChHHHHHHHHhh-cCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence            45678999996 99999999999999999 9999875321111222221 236888999998876      678999998


Q ss_pred             ccC
Q 025022          104 LAC  106 (259)
Q Consensus       104 ~a~  106 (259)
                      +.+
T Consensus        78 ~~~   80 (153)
T 1id1_A           78 LSD   80 (153)
T ss_dssp             CSS
T ss_pred             ecC
Confidence            764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.29  E-value=2.6e-06  Score=70.73  Aligned_cols=88  Identities=19%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~  106 (259)
                      .|||+|+|+ |++|+.+++.|.+ .+. |.+.+++.    +.++..  ...+..+..|..+.+     ..++|+||++++
T Consensus        16 ~mkilvlGa-G~vG~~~~~~L~~-~~~-v~~~~~~~----~~~~~~--~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p   86 (365)
T 3abi_A           16 HMKVLILGA-GNIGRAIAWDLKD-EFD-VYIGDVNN----ENLEKV--KEFATPLKVDASNFDKLVEVMKEFELVIGALP   86 (365)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTT-TSE-EEEEESCH----HHHHHH--TTTSEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             ccEEEEECC-CHHHHHHHHHHhc-CCC-eEEEEcCH----HHHHHH--hccCCcEEEecCCHHHHHHHHhCCCEEEEecC
Confidence            478999998 9999999999855 455 88887743    222222  135667788888776     678999999886


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEe
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~S  146 (259)
                      +..                  ...++++|.++|++++=+|
T Consensus        87 ~~~------------------~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           87 GFL------------------GFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             GGG------------------HHHHHHHHHHHTCEEEECC
T ss_pred             Ccc------------------cchHHHHHHhcCcceEeee
Confidence            421                  1368899999998776554

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.26  E-value=2e-06  Score=70.37  Aligned_cols=116  Identities=13%  Similarity=0.170  Sum_probs=74.3

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcch---hhhc-cCCCceeEeecccCccccCCcCEEE
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRKW-IGHPRFELIRHDVTEPLLIEVDQIY  102 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~-~~~~~~~~~~~dl~~~~~~~~d~vi  102 (259)
                      ..|+++||.|+|++|++|+.++..|+..|. .+|++++....+....   +... +...++.+ ..|.. .+++++|+||
T Consensus         4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t~d~~-~al~dADvVv   81 (343)
T 3fi9_A            4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-TSDIK-EALTDAKYIV   81 (343)
T ss_dssp             CCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-ESCHH-HHHTTEEEEE
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-cCCHH-HHhCCCCEEE
Confidence            456789999999999999999999999984 2499998753221110   1111 11112221 12221 1278999999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--e-EEEEec
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--R-ILLTST  147 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~-~i~~Ss  147 (259)
                      .+||...  ....+..+.+..|....+.+++.+.+...  . ++.+|-
T Consensus        82 itaG~p~--kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN  127 (343)
T 3fi9_A           82 SSGGAPR--KEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN  127 (343)
T ss_dssp             ECCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             EccCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence            9998643  22345667789999999999999988765  3 555553

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.23  E-value=2.1e-05  Score=56.83  Aligned_cols=71  Identities=18%  Similarity=0.180  Sum_probs=50.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~  103 (259)
                      ..+++|+|+|+ |.+|..+++.|.+.|+. |++++++....    +......+...+.+|..+.+      ..++|+||.
T Consensus        17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~-V~vid~~~~~~----~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~   90 (155)
T 2g1u_A           17 QKSKYIVIFGC-GRLGSLIANLASSSGHS-VVVVDKNEYAF----HRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFA   90 (155)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCGGGG----GGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCe-EEEEECCHHHH----HHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEE
Confidence            34689999995 99999999999999997 99998854332    22110234566777765533      457899998


Q ss_pred             ccC
Q 025022          104 LAC  106 (259)
Q Consensus       104 ~a~  106 (259)
                      +.+
T Consensus        91 ~~~   93 (155)
T 2g1u_A           91 FTN   93 (155)
T ss_dssp             CSS
T ss_pred             EeC
Confidence            775

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=98.21  E-value=2.5e-06  Score=70.06  Aligned_cols=98  Identities=10%  Similarity=0.128  Sum_probs=60.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcC-----CCeEEEEcCCCCCCcchhhhccCC----CceeEeecccCccccCCcCE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQ  100 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g-----~~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~d~  100 (259)
                      |++++|.|.||||++|+.|++.|++++     ..+++.+.++..... .+....+.    ..+.+.  |+...++.++|+
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk-~~~~~~~~l~~~~~~~~~--~~~~~~~~~~Dv   83 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGS-TLGEHHPHLTPLAHRVVE--PTEAAVLGGHDA   83 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTS-BGGGTCTTCGGGTTCBCE--ECCHHHHTTCSE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCC-chhhhcccccccceeeec--cCCHHHhcCCCE
Confidence            456799999999999999999999887     434666654322111 11111000    112222  222222558999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      ||.+.+...                  ...++..+ +.|+++|-+|+..
T Consensus        84 Vf~alg~~~------------------s~~~~~~~-~~G~~vIDlSa~~  113 (352)
T 2nqt_A           84 VFLALPHGH------------------SAVLAQQL-SPETLIIDCGADF  113 (352)
T ss_dssp             EEECCTTSC------------------CHHHHHHS-CTTSEEEECSSTT
T ss_pred             EEECCCCcc------------------hHHHHHHH-hCCCEEEEECCCc
Confidence            999886432                  23566677 7777999998875

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=98.15  E-value=2e-05  Score=63.61  Aligned_cols=112  Identities=17%  Similarity=0.077  Sum_probs=74.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc-CC-CeEEEEcCCCCCCcchhhhccCC-CceeEe--ecccCccccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN-EK-NEVIVVDNYFTGSKDNLRKWIGH-PRFELI--RHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~-g~-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~--~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      |||.|+||+|++|+.++..|... +. .++++++... ...-...++... ......  .++-...+++++|+||.+||.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence            68999999999999999999876 43 3588888764 211111111111 112221  111112238899999999986


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      ..  ....+..+.++.|....+.+.+.+.+...  .++.+|-
T Consensus        80 ~r--kpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN  119 (312)
T 3hhp_A           80 AR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (312)
T ss_dssp             SC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            53  23445778889999999999999988765  6666654

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.15  E-value=1.4e-05  Score=65.03  Aligned_cols=112  Identities=13%  Similarity=0.120  Sum_probs=76.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcc---hhhhccCC--CceeEeecccCccccCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKD---NLRKWIGH--PRFELIRHDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~---~~~~~~~~--~~~~~~~~dl~~~~~~~~d~vi~~  104 (259)
                      ..++|.|+|+ |++|..++..|+..|. .++++++++..+...   .+......  ..+.....|.  .++.++|+||.+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~--~a~~~aDvVvi~   80 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTY--EDCKDADIVCIC   80 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECG--GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcH--HHhCCCCEEEEe
Confidence            4679999996 9999999999999986 349999875332111   01111110  2334443332  237899999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      +|...  ....+..+.+..|....+.+++.+.+...  .++.+|-
T Consensus        81 ag~p~--kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           81 AGANQ--KPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             CSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccCC--CCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            98643  22344667788999999999999988765  6666653

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.13  E-value=1.6e-05  Score=64.59  Aligned_cols=114  Identities=12%  Similarity=0.059  Sum_probs=74.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc---hhhhcc--CCCceeEe-ecccCccccCCcCEEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWI--GHPRFELI-RHDVTEPLLIEVDQIY  102 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~~~~~~--~~~~~~~~-~~dl~~~~~~~~d~vi  102 (259)
                      .|++++|.|+|+ |.+|..++..|...|..+|++++++......   .+....  ......+. ..|.  .++.++|+||
T Consensus         4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~--~a~~~aDiVI   80 (324)
T 3gvi_A            4 SMARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY--AAIEGADVVI   80 (324)
T ss_dssp             --CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG--GGGTTCSEEE
T ss_pred             CCcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH--HHHCCCCEEE
Confidence            367789999998 9999999999999988239999986543211   111110  00122222 2343  3478999999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      .++|...  ....+..+.+..|....+.+++.+.+...  .++.+|-
T Consensus        81 iaag~p~--k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           81 VTAGVPR--KPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             ECCSCCC--C-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EccCcCC--CCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            9998643  22234456778899999999999988765  6666664

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.11  E-value=7.8e-06  Score=66.38  Aligned_cols=116  Identities=12%  Similarity=0.125  Sum_probs=66.1

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcc---hhhhccC-CCceeEeecccCccccCCcCEE
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKD---NLRKWIG-HPRFELIRHDVTEPLLIEVDQI  101 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~---~~~~~~~-~~~~~~~~~dl~~~~~~~~d~v  101 (259)
                      .++..+++|.|+|+ |.+|..++..|+..|. .++++++++......   .+..... ...+.....|.  .++.++|+|
T Consensus         4 ~~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~--~a~~~aDiV   80 (326)
T 3vku_A            4 ITDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEY--SDAKDADLV   80 (326)
T ss_dssp             ---CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCG--GGGTTCSEE
T ss_pred             cccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcH--HHhcCCCEE
Confidence            34567889999996 9999999999999886 358888875332110   0111100 02334343332  237899999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      |.+||...  ....+..+.++.|....+.+++.+.+...  .++.+|-
T Consensus        81 vi~ag~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN  126 (326)
T 3vku_A           81 VITAGAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             EECCCCC------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred             EECCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence            99998643  22334566788899999999999988765  6666553

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.10  E-value=4.4e-05  Score=61.95  Aligned_cols=113  Identities=14%  Similarity=0.076  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-----CCceeEe-ecccCccccCCcCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELI-RHDVTEPLLIEVDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~-~~dl~~~~~~~~d~vi~  103 (259)
                      |++++|.|+| +|.+|..++..|...+..+|++++++.........++..     .....+. ..|.  .++.++|+||.
T Consensus         3 m~~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~--~a~~~aDvVIi   79 (321)
T 3p7m_A            3 MARKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDY--KDLENSDVVIV   79 (321)
T ss_dssp             CCCCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--GGGTTCSEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCH--HHHCCCCEEEE
Confidence            6678999999 599999999999998872399998865432211111111     0122232 2332  34789999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      ++|...  .......+.+..|....+.+++.+.+...  .++.+|-
T Consensus        80 ~ag~p~--k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  123 (321)
T 3p7m_A           80 TAGVPR--KPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN  123 (321)
T ss_dssp             CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             cCCcCC--CCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            998653  22345667788899999999999988765  6666653

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=98.10  E-value=1.9e-05  Score=64.62  Aligned_cols=120  Identities=14%  Similarity=0.038  Sum_probs=74.7

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCC------CeEEEEcCCCCCC-cchhhhcc---CCCc-eeEeecccCccc
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNYFTGS-KDNLRKWI---GHPR-FELIRHDVTEPL   94 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~------~~V~~~~r~~~~~-~~~~~~~~---~~~~-~~~~~~dl~~~~   94 (259)
                      .+..|+..||.|+||+|.||+.++-.|.....      .++..++..+... .+.....+   ..+. .....++-...+
T Consensus        18 ~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a   97 (345)
T 4h7p_A           18 GPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVA   97 (345)
T ss_dssp             ----CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHH
T ss_pred             CCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHH
Confidence            34456667999999999999999988876532      1477777643211 01111111   1111 122222212223


Q ss_pred             cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C--eEEEEec
Q 025022           95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST  147 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~~Ss  147 (259)
                      ++++|+||-+||...  .......++++.|....+.+.+.+.+.. .  +++.+|-
T Consensus        98 ~~~advVvi~aG~pr--kpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN  151 (345)
T 4h7p_A           98 FDGVAIAIMCGAFPR--KAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN  151 (345)
T ss_dssp             TTTCSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             hCCCCEEEECCCCCC--CCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence            889999999999754  3345678899999999999999988753 2  6666664

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.10  E-value=6.6e-06  Score=70.28  Aligned_cols=75  Identities=25%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEE
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      .++++++|+|+|+ |++|+++++.|++. +++ |+++.|+..+... +...   .++..+.+|+.+.+     +.++|+|
T Consensus        19 ~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~-V~v~~R~~~ka~~-la~~---~~~~~~~~D~~d~~~l~~~l~~~DvV   92 (467)
T 2axq_A           19 GRHMGKNVLLLGS-GFVAQPVIDTLAANDDIN-VTVACRTLANAQA-LAKP---SGSKAISLDVTDDSALDKVLADNDVV   92 (467)
T ss_dssp             ----CEEEEEECC-STTHHHHHHHHHTSTTEE-EEEEESSHHHHHH-HHGG---GTCEEEECCTTCHHHHHHHHHTSSEE
T ss_pred             cCCCCCEEEEECC-hHHHHHHHHHHHhCCCCe-EEEEECCHHHHHH-HHHh---cCCcEEEEecCCHHHHHHHHcCCCEE
Confidence            3456789999997 99999999999998 665 8888885432221 2111   24566778877654     5689999


Q ss_pred             EEccCCC
Q 025022          102 YHLACPA  108 (259)
Q Consensus       102 i~~a~~~  108 (259)
                      ||+++..
T Consensus        93 In~tp~~   99 (467)
T 2axq_A           93 ISLIPYT   99 (467)
T ss_dssp             EECSCGG
T ss_pred             EECCchh
Confidence            9998754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.07  E-value=1.9e-05  Score=60.56  Aligned_cols=68  Identities=13%  Similarity=0.234  Sum_probs=52.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a~  106 (259)
                      |+|+|+|+ |.+|+++++.|.+.|+. |+++++++.    ..+.+....++.++.+|.++.+      ..++|++|.+.+
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~~-v~vid~~~~----~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   74 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKYG-VVIINKDRE----LCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP   74 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTCC-EEEEESCHH----HHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCe-EEEEECCHH----HHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence            68999996 99999999999999999 999987433    2222111135778999998876      568999997653

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=98.04  E-value=2.8e-05  Score=63.65  Aligned_cols=94  Identities=16%  Similarity=0.186  Sum_probs=57.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEc-CCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVD-NYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      .|+|+|.||||++|+.+++.|.++++.  +++++. ++.....  +.  +....+.+...|.  ..+.++|+||.+.+..
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~--~~--~~g~~i~~~~~~~--~~~~~~DvV~~a~g~~   79 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR--MG--FAESSLRVGDVDS--FDFSSVGLAFFAAAAE   79 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE--EE--ETTEEEECEEGGG--CCGGGCSEEEECSCHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCc--cc--cCCcceEEecCCH--HHhcCCCEEEEcCCcH
Confidence            478999999999999999999976544  245443 3221111  10  1111222222222  2256899999987521


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                        ....++..+.+.|+++|.+|+..
T Consensus        80 ------------------~s~~~a~~~~~aG~kvId~Sa~~  102 (340)
T 2hjs_A           80 ------------------VSRAHAERARAAGCSVIDLSGAL  102 (340)
T ss_dssp             ------------------HHHHHHHHHHHTTCEEEETTCTT
T ss_pred             ------------------HHHHHHHHHHHCCCEEEEeCCCC
Confidence                              23456777778888888888764

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.00  E-value=3.3e-05  Score=61.78  Aligned_cols=109  Identities=18%  Similarity=0.108  Sum_probs=74.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcch---hhh---ccCCCceeEe-ecccCccccCCcCEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRK---WIGHPRFELI-RHDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~---~~~~~~~~~~-~~dl~~~~~~~~d~vi~~  104 (259)
                      |||.|+|+ |.||+.++-.|..++. .++++++.......-.   +..   ... ...... ..|.  .+++++|+||-+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~-~~~~i~~~~d~--~~~~~aDvVvit   76 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGID-KYPKIVGGADY--SLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGT-CCCEEEEESCG--GGGTTCSEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCC-CCCeEecCCCH--HHhCCCCEEEEe
Confidence            79999995 9999999999988864 5688888753221110   111   011 111222 2233  237899999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      ||...  ....+..+.+..|....+.+.+.+.++..  .++.+|-
T Consensus        77 AG~pr--kpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN  119 (294)
T 2x0j_A           77 AGLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             CCCCC--CSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             cCCCC--CCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence            99654  33456788999999999999999988765  6666654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.00  E-value=5.1e-05  Score=60.77  Aligned_cols=110  Identities=17%  Similarity=0.067  Sum_probs=75.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCc-ch--hhhcc--CCCceeEe-ecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSK-DN--LRKWI--GHPRFELI-RHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~-~~--~~~~~--~~~~~~~~-~~dl~~~~~~~~d~vi~~a  105 (259)
                      |||.|+|+ |.+|..++..|...|.. +|+++++++.... ..  +....  -.....+. ..|  ...++++|+||.++
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d--~~a~~~aDiVViaa   77 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD--YSLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC--GGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC--HHHhCCCCEEEECC
Confidence            68999998 99999999999998872 4999988653321 00  11111  01122222 223  34488999999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      |...  ....+..+++..|....+.+++.+.+.+.  .++.+|-
T Consensus        78 g~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN  119 (294)
T 1oju_A           78 GLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             CCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            8653  22345667888999999999999988765  6776664

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.99  E-value=3.4e-05  Score=63.33  Aligned_cols=95  Identities=9%  Similarity=0.085  Sum_probs=59.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCC-CceeEeecccCccccCCcCEEEEccCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGH-PRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~-~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      +++|.|.||+|++|+.+++.|.++...+++++.+..... ..+...   +.. ..+.+...|    ++.++|+||.+.+.
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g-~~~~~~~~~~~g~~~~~~~~~~----~~~~vDvV~~a~g~   78 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAG-EPVHFVHPNLRGRTNLKFVPPE----KLEPADILVLALPH   78 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTT-SBGGGTCGGGTTTCCCBCBCGG----GCCCCSEEEECCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhC-chhHHhCchhcCcccccccchh----HhcCCCEEEEcCCc
Confidence            579999999999999999999987654477666533221 112111   100 122222222    24689999998863


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      ..                  ...++..+.+.|+++|-.|+..
T Consensus        79 ~~------------------s~~~a~~~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           79 GV------------------FAREFDRYSALAPVLVDLSADF  102 (345)
T ss_dssp             TH------------------HHHTHHHHHTTCSEEEECSSTT
T ss_pred             HH------------------HHHHHHHHHHCCCEEEEcCccc
Confidence            21                  2356666677788988888753

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.96  E-value=2.5e-05  Score=63.20  Aligned_cols=113  Identities=16%  Similarity=0.094  Sum_probs=74.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC-CCCcchhh-hccC-----CCceeEe-ecccCccccCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLR-KWIG-----HPRFELI-RHDVTEPLLIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~~~~~~~~-~~~~-----~~~~~~~-~~dl~~~~~~~~d~v  101 (259)
                      |+.++|.|+|+ |.+|..++..|...|..+|++++++. ....+... ++..     .....+. ..|  ..+++++|+|
T Consensus         6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d--~~a~~~aDvV   82 (315)
T 3tl2_A            6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD--YADTADSDVV   82 (315)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC--GGGGTTCSEE
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC--HHHhCCCCEE
Confidence            34579999996 99999999999999983399998862 11111110 0000     0111122 122  2337899999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      |.++|...  ....+..+.+..|....+.+.+.+.+...  .++.+|-
T Consensus        83 Iiaag~p~--kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           83 VITAGIAR--KPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             EECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            99998653  22345677889999999999999988765  6666663

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.96  E-value=0.00011  Score=59.60  Aligned_cols=110  Identities=16%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccCC----CceeEeecccCccccCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      .+||.|+|+ |++|..++..|+..+. .+|++++.+..+.......+...    ..+++...|  ..+++++|+||.+++
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~--~~a~~~aDvVii~~g   83 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD--YSDVKDCDVIVVTAG   83 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C--GGGGTTCSEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECC--HHHhCCCCEEEEcCC
Confidence            479999998 9999999999999876 24999998654433211111110    133333222  233889999999998


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ....  ......+....|+...+.+++.+.+...  .++.+|
T Consensus        84 ~p~k--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (318)
T 1y6j_A           84 ANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  123 (318)
T ss_dssp             C--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             CCCC--CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence            6432  2234456778899999999999988654  555543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.95  E-value=4.2e-05  Score=54.24  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      .++|+|+|. |.+|+.+++.|.+.|+. |+++++++.    ..+... ..++..+.+|.++.+      ..++|++|.+.
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~~-v~vid~~~~----~~~~~~-~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDIP-LVVIETSRT----RVDELR-ERGVRAVLGNAANEEIMQLAHLECAKWLILTI   79 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCC-EEEEESCHH----HHHHHH-HTTCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCCC-EEEEECCHH----HHHHHH-HcCCCEEECCCCCHHHHHhcCcccCCEEEEEC
Confidence            468999996 99999999999999999 999998543    222221 137788999998876      45789998766


Q ss_pred             C
Q 025022          106 C  106 (259)
Q Consensus       106 ~  106 (259)
                      +
T Consensus        80 ~   80 (140)
T 3fwz_A           80 P   80 (140)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.92  E-value=6.6e-05  Score=61.07  Aligned_cols=112  Identities=14%  Similarity=0.127  Sum_probs=76.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcch---hhhc--cCCCceeEe-ecccCccccCCcCEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRKW--IGHPRFELI-RHDVTEPLLIEVDQIY  102 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~--~~~~~~~~~-~~dl~~~~~~~~d~vi  102 (259)
                      ...++|.|+|+ |.+|..++..|+..|. .++++++++.......   +...  +. .....+ ..|..  +++++|+||
T Consensus        17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~-~~~~i~~~~d~~--~~~~aDiVv   92 (331)
T 4aj2_A           17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFL-KTPKIVSSKDYS--VTANSKLVI   92 (331)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGC-SCCEEEECSSGG--GGTTEEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhcc-CCCeEEEcCCHH--HhCCCCEEE
Confidence            45789999997 9999999999999986 3488888753221110   1111  11 111222 33432  378999999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      .+||...  ....+..+.+..|....+.+.+.+.+...  .++.+|-
T Consensus        93 i~aG~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           93 ITAGARQ--QEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             ECCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EccCCCC--CCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            9998653  23445677889999999999999988754  6666664

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.90  E-value=7.1e-05  Score=60.93  Aligned_cols=113  Identities=12%  Similarity=0.112  Sum_probs=72.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccCC----CceeEeecccCccccCCcCEEEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYH  103 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~d~vi~  103 (259)
                      ..+.+||.|+|+ |.+|..++..|+..+. .++++++....+.......+...    ..+.+.. | ...+++++|+||.
T Consensus         6 ~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~-~~~a~~~aDvVii   82 (326)
T 2zqz_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A-EYSDAKDADLVVI   82 (326)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C-CGGGGGGCSEEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEE
Confidence            345689999998 9999999999988774 34888887432221111111110    2333333 2 1233889999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ++|....  ........+..|+...+.+++.+.+...  .++.+|
T Consensus        83 ~ag~~~k--~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  125 (326)
T 2zqz_A           83 TAGAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             CCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             cCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            9986532  2334556778899999999999888765  666654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.89  E-value=0.0001  Score=59.60  Aligned_cols=103  Identities=16%  Similarity=0.116  Sum_probs=66.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccC-----CCceeEee-cccCccccCCcCEEEEc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~dl~~~~~~~~d~vi~~  104 (259)
                      +|||.|+|+ |++|..++..|...|+ + |++++++..........+..     ....++.. .|.  .++.++|+||.+
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~a   77 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY--ADTANSDVIVVT   77 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH--HHHCCCCEEEEc
Confidence            369999998 9999999999999997 6 88888764332211111111     01222222 454  347899999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA  140 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  140 (259)
                      +|....  ...........|....+.+++.+.+...
T Consensus        78 ~g~p~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p  111 (309)
T 1ur5_A           78 SGAPRK--PGMSREDLIKVNADITRACISQAAPLSP  111 (309)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHHGGGCT
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            986532  1222345567788888899998888755

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=97.88  E-value=5.8e-05  Score=62.52  Aligned_cols=100  Identities=10%  Similarity=0.089  Sum_probs=58.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC----------CceeEeecccCcc-ccCCc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----------PRFELIRHDVTEP-LLIEV   98 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~dl~~~-~~~~~   98 (259)
                      |++++|.|.||||++|+.|++.|.++.+.++..+..+.......+.+....          ..+.+.  ++... .+.++
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~--~~~~~~~~~~~   94 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQ--ECKPEGNFLEC   94 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCE--ESSSCTTGGGC
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEE--eCchhhhcccC
Confidence            556799999999999999999888776545654431111111222211100          012222  22222 35689


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      |+||.+.+..                  ....++..+.+.|.++|=.|+..
T Consensus        95 Dvvf~alp~~------------------~s~~~~~~~~~~G~~VIDlSa~f  127 (381)
T 3hsk_A           95 DVVFSGLDAD------------------VAGDIEKSFVEAGLAVVSNAKNY  127 (381)
T ss_dssp             SEEEECCCHH------------------HHHHHHHHHHHTTCEEEECCSTT
T ss_pred             CEEEECCChh------------------HHHHHHHHHHhCCCEEEEcCCcc
Confidence            9999887521                  12346666677788888888764

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.87  E-value=6.4e-05  Score=61.86  Aligned_cols=98  Identities=10%  Similarity=0.149  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC----------CceeEeecccCccccCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~dl~~~~~~~~d~  100 (259)
                      ++++|.|.||+|++|+.+++.|.++...+++++..+.......+......          ..+.+...|.  ..+.++|+
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~vDv   80 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNY--EDHKDVDV   80 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSG--GGGTTCSE
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCH--HHhcCCCE
Confidence            35799999999999999999998775444666641111111112111110          0122222222  22468999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecc
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~  148 (259)
                      ||.+.+..                  ....++..+.+.|+++|-.|+.
T Consensus        81 Vf~atp~~------------------~s~~~a~~~~~aG~~VId~s~~  110 (350)
T 2ep5_A           81 VLSALPNE------------------LAESIELELVKNGKIVVSNASP  110 (350)
T ss_dssp             EEECCCHH------------------HHHHHHHHHHHTTCEEEECSST
T ss_pred             EEECCChH------------------HHHHHHHHHHHCCCEEEECCcc
Confidence            99876421                  2345777777888888877765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.85  E-value=9.9e-05  Score=54.80  Aligned_cols=71  Identities=20%  Similarity=0.205  Sum_probs=51.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQ  100 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~  100 (259)
                      ++.+++|+|+| .|.+|..+++.|.+. |+. |++++++..... .+..    .++..+.+|.++.+       ..++|+
T Consensus        36 ~~~~~~v~IiG-~G~~G~~~a~~L~~~~g~~-V~vid~~~~~~~-~~~~----~g~~~~~gd~~~~~~l~~~~~~~~ad~  108 (183)
T 3c85_A           36 NPGHAQVLILG-MGRIGTGAYDELRARYGKI-SLGIEIREEAAQ-QHRS----EGRNVISGDATDPDFWERILDTGHVKL  108 (183)
T ss_dssp             CCTTCSEEEEC-CSHHHHHHHHHHHHHHCSC-EEEEESCHHHHH-HHHH----TTCCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred             CCCCCcEEEEC-CCHHHHHHHHHHHhccCCe-EEEEECCHHHHH-HHHH----CCCCEEEcCCCCHHHHHhccCCCCCCE
Confidence            35577899998 599999999999999 998 999988543211 1221    25667778876643       357899


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      ||.+.+
T Consensus       109 vi~~~~  114 (183)
T 3c85_A          109 VLLAMP  114 (183)
T ss_dssp             EEECCS
T ss_pred             EEEeCC
Confidence            998764

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.84  E-value=4.1e-05  Score=63.17  Aligned_cols=98  Identities=15%  Similarity=0.235  Sum_probs=58.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC-Cce---eEeecccCccccCCcCEEEEcc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRF---ELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~---~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |+.++|.|.||+|++|+.+++.|.++...+++++.+..... ..+...... .+.   ++...+  +..+.++|+||.+.
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~~~~~~~~~~v~~dl~~~~--~~~~~~vDvVf~at   90 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSMESVFPHLRAQKLPTLVSVK--DADFSTVDAVFCCL   90 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHHHHCGGGTTSCCCCCBCGG--GCCGGGCSEEEECC
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHHHhCchhcCcccccceecc--hhHhcCCCEEEEcC
Confidence            45579999999999999999999988654477766543221 122211100 010   111111  22245899999988


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      +...                  +...+..+ +.|+++|-.|+..
T Consensus        91 p~~~------------------s~~~a~~~-~aG~~VId~sa~~  115 (359)
T 1xyg_A           91 PHGT------------------TQEIIKEL-PTALKIVDLSADF  115 (359)
T ss_dssp             CTTT------------------HHHHHHTS-CTTCEEEECSSTT
T ss_pred             Cchh------------------HHHHHHHH-hCCCEEEECCccc
Confidence            6432                  13455666 6677888888753

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.84  E-value=0.00011  Score=60.04  Aligned_cols=95  Identities=15%  Similarity=0.199  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCC-CCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ++++|.|.||+|++|+.+++.|.++++  .+++++... .....  +.  +....+.+...|  ...+.++|+||.+.|.
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~--~~--~~~~~i~~~~~~--~~~~~~vDvVf~a~g~   75 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKT--YR--FNGKTVRVQNVE--EFDWSQVHIALFSAGG   75 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCE--EE--ETTEEEEEEEGG--GCCGGGCSEEEECSCH
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCc--ee--ecCceeEEecCC--hHHhcCCCEEEECCCc
Confidence            357999999999999999999998742  235555532 11111  11  111123332223  2235689999988752


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      .                  .....+..+.+.|+++|-.|+..
T Consensus        76 ~------------------~s~~~a~~~~~~G~~vId~s~~~   99 (336)
T 2r00_A           76 E------------------LSAKWAPIAAEAGVVVIDNTSHF   99 (336)
T ss_dssp             H------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred             h------------------HHHHHHHHHHHcCCEEEEcCCcc
Confidence            1                  13456667777888888888764

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.84  E-value=9.5e-05  Score=60.96  Aligned_cols=99  Identities=13%  Similarity=0.141  Sum_probs=57.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC----------CceeEeecccCccccC-CcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLI-EVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~dl~~~~~~-~~d~  100 (259)
                      +++|.|.||+|++|+.+++.|.++...+|+++.++.......+......          ..+.+...|..+ ... ++|+
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv   86 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKH-EEFEDVDI   86 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTS-GGGTTCCE
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHH-HhcCCCCE
Confidence            4699999999999999999998875444777754222221122211110          011121122222 124 8999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      ||.+.+..                  ....++..+.+.|+++|-.|+..
T Consensus        87 V~~atp~~------------------~~~~~a~~~~~aG~~VId~s~~~  117 (354)
T 1ys4_A           87 VFSALPSD------------------LAKKFEPEFAKEGKLIFSNASAY  117 (354)
T ss_dssp             EEECCCHH------------------HHHHHHHHHHHTTCEEEECCSTT
T ss_pred             EEECCCch------------------HHHHHHHHHHHCCCEEEECCchh
Confidence            99887521                  12345666667788888777653

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.80  E-value=9.5e-05  Score=59.73  Aligned_cols=111  Identities=14%  Similarity=0.063  Sum_probs=71.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcch---hhhc--cCCCceeEeecccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRKW--IGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~--~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |+|.|+|+ |.+|..++..|+..+. .++++++++.......   +...  ...........+. ..+++++|+||.++|
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~-~~a~~~aDvVii~ag   78 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTND-YGPTEDSDVCIITAG   78 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESS-SGGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCC-HHHhCCCCEEEECCC
Confidence            68999996 9999999999999886 2499998865432111   1110  0001222221121 233789999999998


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      ...  ....+..+.+..|....+.+.+.+.+...  .++.+|-
T Consensus        79 ~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           79 LPR--SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             C---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             CCC--CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            653  22334567888999999999999988765  6666664

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.80  E-value=3.9e-05  Score=57.75  Aligned_cols=69  Identities=14%  Similarity=0.085  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+++|+|+||+|.||..+++.+...|.+ |++++++.... +..++.    +.+. ..|..+.+          ..++|+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~-V~~~~~~~~~~-~~~~~~----g~~~-~~d~~~~~~~~~~~~~~~~~~~D~  110 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGAR-IYTTAGSDAKR-EMLSRL----GVEY-VGDSRSVDFADEILELTDGYGVDV  110 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCE-EEEEESSHHHH-HHHHTT----CCSE-EEETTCSTHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHHc----CCCE-EeeCCcHHHHHHHHHHhCCCCCeE
Confidence            4689999999999999999999999997 98888753321 122221    2221 12433332          136999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|+++|
T Consensus       111 vi~~~g  116 (198)
T 1pqw_A          111 VLNSLA  116 (198)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999986

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.80  E-value=0.00016  Score=59.48  Aligned_cols=95  Identities=15%  Similarity=0.213  Sum_probs=57.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~  109 (259)
                      +++|.|.||||++|+.|++.|.++++.  ++..+..... ....+.  +.  +.+....++....+.++|+||.+.+.. 
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~s-aG~~~~--~~--~~~~~~~~~~~~~~~~~Dvvf~a~~~~-   75 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS-AGKSLK--FK--DQDITIEETTETAFEGVDIALFSAGSS-   75 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTT-TTCEEE--ET--TEEEEEEECCTTTTTTCSEEEECSCHH-
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEcccc-CCCcce--ec--CCCceEeeCCHHHhcCCCEEEECCChH-
Confidence            469999999999999999999887654  2344432211 111111  11  112222222223367899999987521 


Q ss_pred             ccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                       .....+..+.+.|.++|=.|+..
T Consensus        76 -----------------~s~~~a~~~~~~G~~vIDlSa~~   98 (366)
T 3pwk_A           76 -----------------TSAKYAPYAVKAGVVVVDNTSYF   98 (366)
T ss_dssp             -----------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred             -----------------hHHHHHHHHHHCCCEEEEcCCcc
Confidence                             12345666667788888888764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.79  E-value=0.00019  Score=58.23  Aligned_cols=112  Identities=13%  Similarity=0.124  Sum_probs=73.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcch---hhhccC--CCceeEeecccCccccCCcCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRKWIG--HPRFELIRHDVTEPLLIEVDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~~~--~~~~~~~~~dl~~~~~~~~d~vi~  103 (259)
                      |+.+||.|+|+ |.+|..++..|+..+. .++++++.+.......   +.....  ...+++.. |. ..+++++|+||.
T Consensus         4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~~-~~a~~~aDvVvi   80 (317)
T 3d0o_A            4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-GE-YSDCHDADLVVI   80 (317)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-CC-GGGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-CC-HHHhCCCCEEEE
Confidence            45689999998 9999999999998874 3488888753221110   111110  02233332 21 233889999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ++|....  ........+..|....+.+++.+.+...  .+|.+|
T Consensus        81 ~ag~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (317)
T 3d0o_A           81 CAGAAQK--PGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT  123 (317)
T ss_dssp             CCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            9986532  2334556778899999999998888755  555544

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.79  E-value=0.00012  Score=59.34  Aligned_cols=112  Identities=14%  Similarity=0.016  Sum_probs=74.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcch---hhhccC-CCceeEe-ecccCccccCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRKWIG-HPRFELI-RHDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~~~-~~~~~~~-~~dl~~~~~~~~d~vi~~  104 (259)
                      ..++|.|+|+ |.+|..++..|+..|. .+|++++.+.......   +..... ....... ..|..+  ++++|+||-+
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~--~~daDiVIit   96 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV--SAGSKLVVIT   96 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS--CSSCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH--hCCCCEEEEe
Confidence            4589999998 9999999999999986 3489988754321110   111100 0111222 345433  7899999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      ||...  ....+..+.+..|....+.+++.+.+...  .++.+|-
T Consensus        97 aG~p~--kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           97 AGARQ--QEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             CSCCC--CSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            98753  22344556778899999999999988755  6666663

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.78  E-value=0.00015  Score=59.12  Aligned_cols=98  Identities=13%  Similarity=0.181  Sum_probs=59.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC-C-CCcchhhhc---c-CCCceeEeec-ccCcccc-CCcCEEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-T-GSKDNLRKW---I-GHPRFELIRH-DVTEPLL-IEVDQIYH  103 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-~-~~~~~~~~~---~-~~~~~~~~~~-dl~~~~~-~~~d~vi~  103 (259)
                      |++|.|.|+||++|+.+++.|.++...++..+.++. . .....+.+.   + ....+.+... |  ..++ .++|+||.
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~--~~~~~~~~Dvvf~   81 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSD--ISEFSPGVDVVFL   81 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESS--GGGTCTTCSEEEE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCC--HHHHhcCCCEEEE
Confidence            479999999999999999999886433366665433 1 111222211   1 1112222222 2  2234 78999998


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      +.+..                  ....++..+.+.|.++|=.|+..
T Consensus        82 a~p~~------------------~s~~~~~~~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           82 ATAHE------------------VSHDLAPQFLEAGCVVFDLSGAF  109 (337)
T ss_dssp             CSCHH------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred             CCChH------------------HHHHHHHHHHHCCCEEEEcCCcc
Confidence            76421                  12345666677788999999864

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.74  E-value=0.00018  Score=58.10  Aligned_cols=110  Identities=14%  Similarity=0.063  Sum_probs=72.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccC----CCceeEeecccCccccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      |||.|+|+ |++|..++..|+..+. .++++++.+..+.......+..    ...+++...|  ..+++++|+||.+++.
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~--~~a~~~aD~Vii~ag~   77 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGS--YGDLEGARAVVLAAGV   77 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECC--GGGGTTEEEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECC--HHHhCCCCEEEECCCC
Confidence            68999998 9999999999988862 3488888754222111111111    0133333322  3338899999999986


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      ...  ...........|....+.+++.+.+...  .++.+|-
T Consensus        78 ~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           78 AQR--PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             CCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCC--CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            532  2334556778899999999999988765  6666543

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.68  E-value=0.00018  Score=57.99  Aligned_cols=108  Identities=16%  Similarity=0.152  Sum_probs=64.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCCCCCCcchhhhccCC----CceeEeecccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |||.|+|+ |.+|..++..|...|+  + |++++++..............    ........|  ..++.++|+||.+++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~e-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~--~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSE-LVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG--HSELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSE-EEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC--GGGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC--HHHhCCCCEEEEcCC
Confidence            68999998 9999999999999987  5 999988643211111111100    122222223  223789999999997


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ....  ......+.+..|....+.+++.+.+...  .++.+|
T Consensus        77 ~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t  116 (304)
T 2v6b_A           77 ANQK--PGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS  116 (304)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred             CCCC--CCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            5432  1223345667788888999988887644  555444

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.68  E-value=0.00015  Score=57.42  Aligned_cols=74  Identities=11%  Similarity=0.237  Sum_probs=42.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEE-EEcCCCCCC-cchhhhccC--CCceeEeecccCccccCCcCEEEEc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVI-VVDNYFTGS-KDNLRKWIG--HPRFELIRHDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~-~~~r~~~~~-~~~~~~~~~--~~~~~~~~~dl~~~~~~~~d~vi~~  104 (259)
                      |+.|+|.|+|++|.+|+.+++.+.+. +++ ++ ++++..... .....+...  ...+.. ..|+. ..+.++|+||++
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~e-lva~~d~~~~~~~g~d~~~~~g~~~~~v~~-~~dl~-~~l~~~DvVIDf   79 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGVQ-LGAALEREGSSLLGSDAGELAGAGKTGVTV-QSSLD-AVKDDFDVFIDF   79 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEE-CCCEECCTTCTTCSCCTTCSSSSSCCSCCE-ESCST-TTTTSCSEEEEC
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEecCchhhhhhhHHHHcCCCcCCcee-cCCHH-HHhcCCCEEEEc
Confidence            44579999999999999999998765 665 55 445433221 111111110  112211 22332 224579999987


Q ss_pred             cC
Q 025022          105 AC  106 (259)
Q Consensus       105 a~  106 (259)
                      +.
T Consensus        80 t~   81 (273)
T 1dih_A           80 TR   81 (273)
T ss_dssp             SC
T ss_pred             CC
Confidence            74

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.67  E-value=5.8e-05  Score=59.86  Aligned_cols=74  Identities=19%  Similarity=0.283  Sum_probs=48.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCC-CceeEeecccCcccc-CCcCEEEEccC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLL-IEVDQIYHLAC  106 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~dl~~~~~-~~~d~vi~~a~  106 (259)
                      .+.+++++|+|+ |.+|++++..|.+.|.+ |++..|+..+..+ +.+.+.. ..+..  .|+.+. . .++|+||++++
T Consensus       116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~-V~v~~R~~~~~~~-la~~~~~~~~~~~--~~~~~~-~~~~~DivVn~t~  189 (271)
T 1nyt_A          116 IRPGLRILLIGA-GGASRGVLLPLLSLDCA-VTITNRTVSRAEE-LAKLFAHTGSIQA--LSMDEL-EGHEFDLIINATS  189 (271)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSHHHHHH-HHHHTGGGSSEEE--CCSGGG-TTCCCSEEEECCS
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHcCCE-EEEEECCHHHHHH-HHHHhhccCCeeE--ecHHHh-ccCCCCEEEECCC
Confidence            356889999998 78999999999999976 9988886433222 2221111 11221  222111 1 48999999998


Q ss_pred             CC
Q 025022          107 PA  108 (259)
Q Consensus       107 ~~  108 (259)
                      ..
T Consensus       190 ~~  191 (271)
T 1nyt_A          190 SG  191 (271)
T ss_dssp             CG
T ss_pred             CC
Confidence            54

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.66  E-value=0.00017  Score=58.48  Aligned_cols=109  Identities=12%  Similarity=0.113  Sum_probs=67.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccC----CCceeEeecccCccccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      +||.|+|+ |.+|..++..|+..+. .+++++++...+.......+..    ...+++.. | ...+++++|+||.+++.
T Consensus         6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~-~~~a~~~aDvVii~ag~   82 (318)
T 1ez4_A            6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G-EYSDCKDADLVVITAGA   82 (318)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C-CGGGGTTCSEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEECCCC
Confidence            79999998 9999999999988875 3488888743222111111100    02333333 2 22338899999999986


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ...  ......+.+..|+...+.+++.+.+...  .++.+|
T Consensus        83 ~~~--~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  121 (318)
T 1ez4_A           83 PQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (318)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            532  1233445678899999999999988765  666654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.65  E-value=0.0007  Score=54.98  Aligned_cols=109  Identities=13%  Similarity=0.120  Sum_probs=69.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcc---hhhhcc--CCCceeEee-cccCccccCCcCEEEEc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKD---NLRKWI--GHPRFELIR-HDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~---~~~~~~--~~~~~~~~~-~dl~~~~~~~~d~vi~~  104 (259)
                      .+||.|+|+ |++|..++..|...|+ + |++++++......   .+....  .....++.. .|.  .++.++|+||.+
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~--~al~~aD~Vi~a   79 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY--DDLAGADVVIVT   79 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG--GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH--HHhCCCCEEEEe
Confidence            479999998 9999999999999998 6 8888886543221   111100  001222222 454  347899999999


Q ss_pred             cCCCCccccccC-----hhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          105 ACPASPIFYKYN-----PVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       105 a~~~~~~~~~~~-----~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      +|....  ....     ..+....|....+.+++.+.+...  .+|.+|
T Consensus        80 ~g~p~k--~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  126 (322)
T 1t2d_A           80 AGFTKA--PGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  126 (322)
T ss_dssp             CSCSSC--TTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             CCCCCC--CCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            975432  1111     345566788888888888777644  555443

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.65  E-value=0.00068  Score=54.76  Aligned_cols=108  Identities=14%  Similarity=0.066  Sum_probs=69.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc--CCCeEEEEcCCCCCCcchhhhccC-----CCceeEee-cccCccccCCcCEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~dl~~~~~~~~d~vi~~  104 (259)
                      |+|.|+|+ |.+|..++..|...  |++ |++++++..........+..     .....+.. .|..  ++.++|+||.+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~--~l~~aDvViia   76 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARE-LVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYA--DTANSDIVIIT   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGG--GGTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCE-EEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHH--HHCCCCEEEEe
Confidence            68999998 99999999999885  566 99999865432211001100     01112211 3432  27899999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ++...  .........+..|......+++.+.+...  .++.+|
T Consensus        77 v~~p~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t  118 (310)
T 1guz_A           77 AGLPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (310)
T ss_dssp             CSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            87532  11223556777889999999998887754  656554

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=97.61  E-value=0.00051  Score=56.08  Aligned_cols=94  Identities=18%  Similarity=0.110  Sum_probs=58.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCC-CCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +++|.|.||||++|..|++.|.++.+.  ++..+... .....  +.  +.  +.+...-++....+.++|+||.+.+..
T Consensus         1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~--~~--~~--~~~~~~~~~~~~~~~~~Dvvf~a~~~~   74 (344)
T 3tz6_A            1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRK--LA--FR--GQEIEVEDAETADPSGLDIALFSAGSA   74 (344)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCE--EE--ET--TEEEEEEETTTSCCTTCSEEEECSCHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCc--ee--ec--CCceEEEeCCHHHhccCCEEEECCChH
Confidence            468999999999999999999887544  24444432 21111  11  11  112222233333467899999987521


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                        .....+..+.+.|.++|=.|+..
T Consensus        75 ------------------~s~~~a~~~~~~G~~vID~Sa~~   97 (344)
T 3tz6_A           75 ------------------MSKVQAPRFAAAGVTVIDNSSAW   97 (344)
T ss_dssp             ------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred             ------------------HHHHHHHHHHhCCCEEEECCCcc
Confidence                              12345666667788888888764

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.60  E-value=0.0004  Score=57.25  Aligned_cols=115  Identities=16%  Similarity=0.072  Sum_probs=71.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC-e---EEEEcCCCCCCcchhh---hccCCC---ceeEee-cccCccccCCcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN-E---VIVVDNYFTGSKDNLR---KWIGHP---RFELIR-HDVTEPLLIEVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~-~---V~~~~r~~~~~~~~~~---~~~~~~---~~~~~~-~dl~~~~~~~~d~  100 (259)
                      .+||.|+||+|.||++++-.|+..+.- +   +.......+...+.++   ..+.+.   -..-+. .+-...+++++|+
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDv  111 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  111 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCE
Confidence            468999999999999999999887642 1   4443322222211111   111111   111111 1111122889999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CC--eEEEEecc
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTSTS  148 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~~i~~Ss~  148 (259)
                      ||.+||...  ....+..+.++.|....+.+.+.+.+. +.  .++.+|-.
T Consensus       112 VVitag~pr--kpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNP  160 (375)
T 7mdh_A          112 ALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP  160 (375)
T ss_dssp             EEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             EEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            999998643  234567788999999999999999875 33  77776643

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.60  E-value=0.00033  Score=56.75  Aligned_cols=111  Identities=15%  Similarity=0.201  Sum_probs=70.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhc---cC--CCceeEeecccCccccCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKW---IG--HPRFELIRHDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~---~~--~~~~~~~~~dl~~~~~~~~d~vi~~  104 (259)
                      +.+||.|+|+ |.+|..++..|...+. .+|++++++..........+   ..  ...+++...+  ..++.++|+||.+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~--~~al~~aDvViia   81 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD--YDDCRDADLVVIC   81 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC--GGGTTTCSEEEEC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCc--HHHhCCCCEEEEc
Confidence            4579999998 9999999999988774 34999988643111111111   11  0123333222  2237899999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ++.....  .....+.+..|......+++.+.+...  .++.+|
T Consensus        82 ~~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t  123 (316)
T 1ldn_A           82 AGANQKP--GETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT  123 (316)
T ss_dssp             CSCCCCT--TTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             CCCCCCC--CCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence            9875432  223345677788888889988887654  444443

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=97.57  E-value=0.00016  Score=59.01  Aligned_cols=93  Identities=17%  Similarity=0.105  Sum_probs=55.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~  110 (259)
                      |+|.|.||+|++|+.+++.|.++++.  .++.+..... ....+.  +....+.+...|..  .. ++|+||.+.|..  
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~-~g~~l~--~~g~~i~v~~~~~~--~~-~~DvV~~a~g~~--   72 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRS-AGVRLA--FRGEEIPVEPLPEG--PL-PVDLVLASAGGG--   72 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGG-SSCEEE--ETTEEEEEEECCSS--CC-CCSEEEECSHHH--
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeecccc-CCCEEE--EcCceEEEEeCChh--hc-CCCEEEECCCcc--
Confidence            58999999999999999999977665  2332221110 111111  11113344444422  25 899999987522  


Q ss_pred             cccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                      .....+..+.+.|.++|-.|+..
T Consensus        73 ----------------~s~~~a~~~~~~G~~vId~s~~~   95 (331)
T 2yv3_A           73 ----------------ISRAKALVWAEGGALVVDNSSAW   95 (331)
T ss_dssp             ----------------HHHHHHHHHHHTTCEEEECSSSS
T ss_pred             ----------------chHHHHHHHHHCCCEEEECCCcc
Confidence                            22345556667778888888864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.56  E-value=0.00049  Score=56.11  Aligned_cols=110  Identities=12%  Similarity=0.011  Sum_probs=69.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchh---hhc---cC-CCceeEeecccCccccCCcCEEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNL---RKW---IG-HPRFELIRHDVTEPLLIEVDQIYH  103 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~---~~~---~~-~~~~~~~~~dl~~~~~~~~d~vi~  103 (259)
                      .|+|.|+|+ |.+|..++..|...|+ + |++++++........   ...   .. ..++.. ..|+.+ .+.++|+||.
T Consensus         9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~~e-a~~~aDiVi~   84 (331)
T 1pzg_A            9 RKKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-EYSYEA-ALTGADCVIV   84 (331)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-ECSHHH-HHTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-eCCHHH-HhCCCCEEEE
Confidence            469999998 9999999999999998 6 999998654322111   110   11 112221 234321 3789999999


Q ss_pred             ccCCCCcccccc---ChhHHHHHhhhhHHHHHHHHHHhCC--eEEEE
Q 025022          104 LACPASPIFYKY---NPVKTIKTNVIGTLNMLGLAKRVGA--RILLT  145 (259)
Q Consensus       104 ~a~~~~~~~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~  145 (259)
                      ++|.......+.   ........|....+.+++.+.+...  .+|.+
T Consensus        85 a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~  131 (331)
T 1pzg_A           85 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVV  131 (331)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             ccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            997653211100   3445667788888889888887744  44433

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.55  E-value=0.00035  Score=54.56  Aligned_cols=101  Identities=13%  Similarity=0.088  Sum_probs=64.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC------------------Cc----chhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG------------------SK----DNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~------------------~~----~~~~~~~~~~~~~~~~   87 (259)
                      +.+++|+|+|+ |.+|.++++.|...|...++++++..-.                  ..    +.+........++.+.
T Consensus        29 l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           29 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            45689999995 8899999999999998668888876411                  00    1111111122455555


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecc
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~  148 (259)
                      .++.+..    +.++|+||.+...                 ...-..+.++|++.++.+|+.+..
T Consensus       108 ~~~~~~~~~~~~~~~DvVi~~~d~-----------------~~~~~~l~~~~~~~~~p~i~~~~~  155 (249)
T 1jw9_B          108 ALLDDAELAALIAEHDLVLDCTDN-----------------VAVRNQLNAGCFAAKVPLVSGAAI  155 (249)
T ss_dssp             SCCCHHHHHHHHHTSSEEEECCSS-----------------HHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             ccCCHhHHHHHHhCCCEEEEeCCC-----------------HHHHHHHHHHHHHcCCCEEEeeec
Confidence            5555332    5689999987631                 112235667788888777776544

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.54  E-value=0.00026  Score=55.92  Aligned_cols=37  Identities=22%  Similarity=0.496  Sum_probs=28.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEE-EcCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIV-VDNY   66 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~-~~r~   66 (259)
                      .|+++||.|+|++|.+|+.+++.+.+. +.+ +++ ++++
T Consensus         4 ~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~e-Lv~~~d~~   42 (272)
T 4f3y_A            4 SMSSMKIAIAGASGRMGRMLIEAVLAAPDAT-LVGALDRT   42 (272)
T ss_dssp             --CCEEEEESSTTSHHHHHHHHHHHHCTTEE-EEEEBCCT
T ss_pred             CccccEEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEEec
Confidence            367789999999999999999999876 445 555 4554

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.48  E-value=0.0013  Score=53.49  Aligned_cols=108  Identities=13%  Similarity=0.092  Sum_probs=69.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcc---hhhhcc----CCCceeEeecccCccccCCcCEEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKD---NLRKWI----GHPRFELIRHDVTEPLLIEVDQIYH  103 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~---~~~~~~----~~~~~~~~~~dl~~~~~~~~d~vi~  103 (259)
                      .++|.|+|| |.+|..++..|...|+ + |++.+++......   .+....    ...++.. ..|+  ..+.++|+||.
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d~--~al~~aD~VI~   88 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG-ENNY--EYLQNSDVVII   88 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-ESCG--GGGTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE-CCCH--HHHCCCCEEEE
Confidence            369999998 9999999999999998 6 9999986543221   111110    1112222 1454  34789999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ++|....  ......+....|....+.+++.+.+...  .+|.+|
T Consensus        89 avg~p~k--~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  131 (328)
T 2hjr_A           89 TAGVPRK--PNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT  131 (328)
T ss_dssp             CCSCCCC--TTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             cCCCCCC--CCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9875431  1112234556688888888888776544  444444

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=97.47  E-value=0.0011  Score=53.43  Aligned_cols=109  Identities=10%  Similarity=0.073  Sum_probs=72.5

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-----CCceeEee-cccCccccCCcCEEEEccCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ||.|+|+ |.+|..++..|+..+..+|++++++.........++..     .....+.. .|.  .+++++|+||.++|.
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~~ag~   77 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY--EDMRGSDIVLVTAGI   77 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG--GGGTTCSEEEECCSC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH--HHhCCCCEEEEeCCC
Confidence            5889998 99999999999888873399998864332211111100     11223333 453  348899999999986


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      ...  ...........|....+.+++.+.+...  .+|.+|-
T Consensus        78 ~~k--~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           78 GRK--PGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CCC--SSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCC--CCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            542  2334556778899999999999887654  6666553

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.45  E-value=0.00013  Score=59.58  Aligned_cols=69  Identities=14%  Similarity=0.081  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCc-cc---------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PL---------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~-~~---------~~~~d~  100 (259)
                      .+++|+|+||+|.||..+++.+...|++ |++++++.... +..+++    +.+ ...|..+ .+         ..++|+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~-V~~~~~~~~~~-~~~~~~----g~~-~~~d~~~~~~~~~~~~~~~~~~~d~  217 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCK-VVGAAGSDEKI-AYLKQI----GFD-AAFNYKTVNSLEEALKKASPDGYDC  217 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCE-EEEEESSHHHH-HHHHHT----TCS-EEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCE-EEEEeCCHHHH-HHHHhc----CCc-EEEecCCHHHHHHHHHHHhCCCCeE
Confidence            4689999999999999999999999997 99988753322 122222    111 1234443 22         246999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|+++|
T Consensus       218 vi~~~g  223 (333)
T 1v3u_A          218 YFDNVG  223 (333)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            999997

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.43  E-value=0.0005  Score=53.07  Aligned_cols=66  Identities=8%  Similarity=0.014  Sum_probs=49.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      .++++|+|+ |.+|+.+++.|.+.|+  |+++++++.    ..+...  .++.++.+|.++.+      ..++|.||.+.
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~--v~vid~~~~----~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV--FVLAEDENV----RKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDL   79 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE--EEEESCGGG----HHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECC
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe--EEEEECCHH----HHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC
Confidence            468999997 9999999999999887  777776432    222222  36889999998876      56899999765


Q ss_pred             C
Q 025022          106 C  106 (259)
Q Consensus       106 ~  106 (259)
                      +
T Consensus        80 ~   80 (234)
T 2aef_A           80 E   80 (234)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.41  E-value=0.00064  Score=55.18  Aligned_cols=108  Identities=13%  Similarity=0.078  Sum_probs=68.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCCCCCCcchh---hhccC-CCceeEeecccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNL---RKWIG-HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~---~~~~~-~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |+|.|+|+ |.+|..++..|+..|+  + |++++++........   ..... .........|  ...+.++|+||.+++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d--~~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFARE-MVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSE-EEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCe-EEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC--HHHhCCCCEEEEccC
Confidence            68999998 9999999999999997  6 999988643221111   10000 0112222223  223778999999887


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ....  ......+....|......+++.+.+...  .+|.+|
T Consensus        77 ~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t  116 (319)
T 1a5z_A           77 VPQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (319)
T ss_dssp             CCCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            5431  1122445667788888888888877644  555443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.41  E-value=0.00039  Score=58.46  Aligned_cols=68  Identities=15%  Similarity=0.185  Sum_probs=53.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      +++|+|+|. |.+|+.+++.|.+.|+. |++++++..    ..+... ..++..+.+|.++.+      ..++|+||.+.
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~~g~~-vvvId~d~~----~v~~~~-~~g~~vi~GDat~~~~L~~agi~~A~~viv~~   76 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLSSGVK-MVVLDHDPD----HIETLR-KFGMKVFYGDATRMDLLESAGAAKAEVLINAI   76 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCC-EEEEECCHH----HHHHHH-HTTCCCEESCTTCHHHHHHTTTTTCSEEEECC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCCC-EEEEECCHH----HHHHHH-hCCCeEEEcCCCCHHHHHhcCCCccCEEEECC
Confidence            468999996 99999999999999999 999987533    222211 236788999999987      56899998766


Q ss_pred             C
Q 025022          106 C  106 (259)
Q Consensus       106 ~  106 (259)
                      +
T Consensus        77 ~   77 (413)
T 3l9w_A           77 D   77 (413)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.40  E-value=0.00011  Score=59.26  Aligned_cols=78  Identities=8%  Similarity=0.010  Sum_probs=48.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC--CcchhhhccC-CCceeEeecccCcc-----ccCCcCE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--SKDNLRKWIG-HPRFELIRHDVTEP-----LLIEVDQ  100 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~dl~~~-----~~~~~d~  100 (259)
                      +..+++++|+|+ |.+|++++..|.+.|...|+++.|..+.  ..+.+.+.+. .........++.+.     ...++|+
T Consensus       151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi  229 (315)
T 3tnl_A          151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI  229 (315)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence            356899999997 8999999999999999558888886221  1111111111 01122222333331     1457999


Q ss_pred             EEEccCC
Q 025022          101 IYHLACP  107 (259)
Q Consensus       101 vi~~a~~  107 (259)
                      |||+...
T Consensus       230 IINaTp~  236 (315)
T 3tnl_A          230 FTNATGV  236 (315)
T ss_dssp             EEECSST
T ss_pred             EEECccC
Confidence            9998753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.39  E-value=0.002  Score=52.23  Aligned_cols=109  Identities=13%  Similarity=0.051  Sum_probs=68.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchh---hhc---c-CCCceeEeecccCccccCCcCEEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNL---RKW---I-GHPRFELIRHDVTEPLLIEVDQIYH  103 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~---~~~---~-~~~~~~~~~~dl~~~~~~~~d~vi~  103 (259)
                      .|+|.|+|+ |.+|..++..|+..|+ + |++++++........   ...   . ...++.. ..|+  ..+.++|+||.
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~--~a~~~aDiVi~   78 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLAD-VVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TDDY--ADISGSDVVII   78 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESCG--GGGTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCce-EEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CCCH--HHhCCCCEEEE
Confidence            479999997 9999999999999998 6 999998653322110   000   0 0112221 1343  34779999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                      +++....  ......+.+..|....+.+++.+.+...  .++.+|-
T Consensus        79 avg~p~~--~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN  122 (317)
T 2ewd_A           79 TASIPGR--PKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN  122 (317)
T ss_dssp             CCCCSSC--CSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             eCCCCCC--CCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            9986542  1223334556677777888887776644  4554543

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.37  E-value=0.00083  Score=54.22  Aligned_cols=109  Identities=12%  Similarity=0.103  Sum_probs=65.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCCCCCcchhhhc---c--CCCceeEeecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKW---I--GHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |+|.|+| +|.+|..++..|.+.|  ++ |++++++...........   .  ....+.....|.  ..+.++|+||.++
T Consensus         2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~-V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~--~~~~~aDvViiav   77 (309)
T 1hyh_A            2 RKIGIIG-LGNVGAAVAHGLIAQGVADD-YVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW--AALADADVVISTL   77 (309)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCSE-EEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG--GGGTTCSEEEECC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH--HHhCCCCEEEEec
Confidence            7999999 7999999999999998  55 999988643221111110   0  011233323444  3377899999988


Q ss_pred             CCCCcc--ccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEE
Q 025022          106 CPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLT  145 (259)
Q Consensus       106 ~~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~  145 (259)
                      +.....  ............|......+++.+.+...  .+|.+
T Consensus        78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~  121 (309)
T 1hyh_A           78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI  121 (309)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            753310  01112234556788778888888776543  44443

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.36  E-value=0.00062  Score=52.04  Aligned_cols=73  Identities=21%  Similarity=0.340  Sum_probs=56.1

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      .++++++|+|.|| |-+|...++.|++.|.. |+++.....   ..++.+....+++++..+..+.++.++|.||-+.
T Consensus        27 l~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~-VtVvap~~~---~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT   99 (223)
T 3dfz_A           27 LDLKGRSVLVVGG-GTIATRRIKGFLQEGAA-ITVVAPTVS---AEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVAT   99 (223)
T ss_dssp             ECCTTCCEEEECC-SHHHHHHHHHHGGGCCC-EEEECSSCC---HHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECC
T ss_pred             EEcCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEECCCCC---HHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECC
Confidence            4567899999996 89999999999999998 888876422   2333333345788888888877788999998543

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.35  E-value=0.00039  Score=57.24  Aligned_cols=97  Identities=13%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC------C----CceeEeecccCccccCCcCEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG------H----PRFELIRHDVTEPLLIEVDQI  101 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~------~----~~~~~~~~dl~~~~~~~~d~v  101 (259)
                      .++|.|.|||||+|+.|++.|.++...++..+..+.. ....+.....      .    ..+.+...|  ...+.++|+|
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s-aGk~~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDvv   83 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS-VGKPYGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDII   83 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT-TTSBHHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCEE
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh-cCCChhHhcccccccccccccccceEEeCC--HHHhcCCCEE
Confidence            4689999999999999999887765444665543322 1112221110      0    011222222  2235689999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      |.+.+...                  ...++..+.+.|.++|=.|+..
T Consensus        84 f~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~  113 (359)
T 4dpk_A           84 FSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDH  113 (359)
T ss_dssp             EECCCTTT------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred             EECCChHH------------------HHHHHHHHHHCCCEEEEcCCCc
Confidence            99876321                  1245556667788888888864

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.35  E-value=0.00039  Score=57.24  Aligned_cols=97  Identities=13%  Similarity=0.156  Sum_probs=57.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC------C----CceeEeecccCccccCCcCEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG------H----PRFELIRHDVTEPLLIEVDQI  101 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~------~----~~~~~~~~dl~~~~~~~~d~v  101 (259)
                      .++|.|.|||||+|+.|++.|.++...++..+..+.. ....+.....      .    ..+.+...|  ...+.++|+|
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s-aGk~~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDvv   83 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS-VGKPYGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDII   83 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT-TTSBHHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCEE
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh-cCCChhHhcccccccccccccccceEEeCC--HHHhcCCCEE
Confidence            4689999999999999999887765444665543322 1112221110      0    011222222  2235689999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      |.+.+...                  ...++..+.+.|.++|=.|+..
T Consensus        84 f~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~  113 (359)
T 4dpl_A           84 FSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDH  113 (359)
T ss_dssp             EECCCTTT------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred             EECCChHH------------------HHHHHHHHHHCCCEEEEcCCCc
Confidence            99876321                  1245556667788889888864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.35  E-value=0.00014  Score=59.22  Aligned_cols=69  Identities=13%  Similarity=-0.039  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+++|+|+||+|.||..+++.+...|++ |++++++..+. +..+++    +.+. ..|..+.+          ..++|+
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~-V~~~~~~~~~~-~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~~~~~D~  212 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKA-QSALKA----GAWQ-VINYREEDLVERLKEITGGKKVRV  212 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCE-EEEEESSHHHH-HHHHHH----TCSE-EEETTTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHHc----CCCE-EEECCCccHHHHHHHHhCCCCceE
Confidence            4689999999999999999999999997 99988753221 222221    1111 12333322          236999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|+++|
T Consensus       213 vi~~~g  218 (327)
T 1qor_A          213 VYDSVG  218 (327)
T ss_dssp             EEECSC
T ss_pred             EEECCc
Confidence            999997

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.00041  Score=57.00  Aligned_cols=69  Identities=17%  Similarity=0.097  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCc-cc---------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PL---------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~-~~---------~~~~d~  100 (259)
                      .+++|+|+|++|.+|..+++.+...|.+ |++++++.... +..+++    +.+. ..|..+ .+         ..++|+
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~-V~~~~~~~~~~-~~~~~~----g~~~-~~d~~~~~~~~~~~~~~~~~~~D~  241 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYR-VLGIDGGEGKE-ELFRSI----GGEV-FIDFTKEKDIVGAVLKATDGGAHG  241 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECSTTHH-HHHHHT----TCCE-EEETTTCSCHHHHHHHHHTSCEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCc-EEEEcCCHHHH-HHHHHc----CCce-EEecCccHhHHHHHHHHhCCCCCE
Confidence            4689999999999999999999999997 99988754332 223322    2221 124442 11         127999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|+++|
T Consensus       242 vi~~~g  247 (347)
T 2hcy_A          242 VINVSV  247 (347)
T ss_dssp             EEECSS
T ss_pred             EEECCC
Confidence            999987

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.30  E-value=7.5e-05  Score=61.11  Aligned_cols=69  Identities=14%  Similarity=0.128  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchh-hhccCCCceeEeecccCccc---------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIGHPRFELIRHDVTEPL---------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~dl~~~~---------~~~~d~  100 (259)
                      .+++|+|+|++|.||..+++.+...|.+ |+++.+++.+.. .+ +++    +.+.+ .|..+.+         ..++|+
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~~-~~~~~~----g~~~~-~~~~~~~~~~~~~~~~~~~~d~  221 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCR-VVGIAGGAEKCR-FLVEEL----GFDGA-IDYKNEDLAAGLKRECPKGIDV  221 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHH-HHHHTT----CCSEE-EETTTSCHHHHHHHHCTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHHc----CCCEE-EECCCHHHHHHHHHhcCCCceE
Confidence            4689999999999999999999999997 999887543221 22 221    22211 2222222         246999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|+++|
T Consensus       222 vi~~~g  227 (336)
T 4b7c_A          222 FFDNVG  227 (336)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            999987

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.30  E-value=0.00057  Score=54.05  Aligned_cols=74  Identities=14%  Similarity=0.191  Sum_probs=48.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      .++++++|+|+ |.+|++++..|.+.|...|++..|...+..+..+. +....+.....+  +....++|+||++...
T Consensus       118 l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~-~~~~~~~~~~~~--~l~~~~~DivInaTp~  191 (272)
T 3pwz_A          118 LRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNE-LDHSRLRISRYE--ALEGQSFDIVVNATSA  191 (272)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHH-HCCTTEEEECSG--GGTTCCCSEEEECSSG
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-hccCCeeEeeHH--HhcccCCCEEEECCCC
Confidence            56899999997 88999999999999975598888864433222222 211123333322  2112579999998643

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.30  E-value=0.0018  Score=52.43  Aligned_cols=103  Identities=15%  Similarity=0.136  Sum_probs=65.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCCCCCCc-chh--hhccC-CCceeEeec-ccCccccCCcCEEEEc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSK-DNL--RKWIG-HPRFELIRH-DVTEPLLIEVDQIYHL  104 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~-~~~--~~~~~-~~~~~~~~~-dl~~~~~~~~d~vi~~  104 (259)
                      .|+|.|+|+ |.+|..++..|...|+  + |++++++..... ..+  ..... ......... |.  ..+.++|+||.+
T Consensus         7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~-V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~aD~Vii~   82 (319)
T 1lld_A            7 PTKLAVIGA-GAVGSTLAFAAAQRGIARE-IVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP--EICRDADMVVIT   82 (319)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSE-EEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG--GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCE-EEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH--HHhCCCCEEEEC
Confidence            579999997 9999999999999997  6 999988642211 011  11110 011222221 21  236789999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA  140 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~  140 (259)
                      ++....  ...+..+.+..|......+++.+.+.+.
T Consensus        83 v~~~~~--~g~~r~~~~~~n~~~~~~~~~~i~~~~~  116 (319)
T 1lld_A           83 AGPRQK--PGQSRLELVGATVNILKAIMPNLVKVAP  116 (319)
T ss_dssp             CCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            875431  2234456677788888888887776543

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=97.29  E-value=0.00014  Score=63.16  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=43.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      .+++++++|+|| |.+|++++..|.+.|.+ |+++.|+..+..+ +...+. ..+..+ .|+.+.....+|++||++|..
T Consensus       361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~-V~i~~R~~~~a~~-la~~~~-~~~~~~-~dl~~~~~~~~DilVN~agvg  435 (523)
T 2o7s_A          361 PLASKTVVVIGA-GGAGKALAYGAKEKGAK-VVIANRTYERALE-LAEAIG-GKALSL-TDLDNYHPEDGMVLANTTSMG  435 (523)
T ss_dssp             -----CEEEECC-SHHHHHHHHHHHHHCC--CEEEESSHHHHHH-HHHHTT-C-CEET-TTTTTC--CCSEEEEECSSTT
T ss_pred             ccCCCEEEEECC-cHHHHHHHHHHHHCCCE-EEEEECCHHHHHH-HHHHcC-CceeeH-HHhhhccccCceEEEECCCCC
Confidence            356789999999 79999999999999997 8888885433222 222221 111111 133221134589999999863

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.28  E-value=0.00013  Score=58.36  Aligned_cols=77  Identities=16%  Similarity=0.075  Sum_probs=48.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCc--eeEeecccC--ccccCCcCEEEEc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR--FELIRHDVT--EPLLIEVDQIYHL  104 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~dl~--~~~~~~~d~vi~~  104 (259)
                      ++.+++++|+|++ .+|++++..|++.| + |++..|+..+..+ +.+.+....  -..+.+|+.  .....++|++|++
T Consensus       125 ~l~~k~vlV~GaG-giG~aia~~L~~~G-~-V~v~~r~~~~~~~-l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~  200 (287)
T 1nvt_A          125 RVKDKNIVIYGAG-GAARAVAFELAKDN-N-IIIANRTVEKAEA-LAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINA  200 (287)
T ss_dssp             CCCSCEEEEECCS-HHHHHHHHHHTSSS-E-EEEECSSHHHHHH-HHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEEC
T ss_pred             CcCCCEEEEECch-HHHHHHHHHHHHCC-C-EEEEECCHHHHHH-HHHHHhhhcccccceeEEEeeHHHhhCCCCEEEEC
Confidence            3567899999985 99999999999999 6 9998885432222 211111000  000112222  2236789999999


Q ss_pred             cCCCC
Q 025022          105 ACPAS  109 (259)
Q Consensus       105 a~~~~  109 (259)
                      ++...
T Consensus       201 ag~~~  205 (287)
T 1nvt_A          201 TPIGM  205 (287)
T ss_dssp             SCTTC
T ss_pred             CCCCC
Confidence            98653

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.28  E-value=0.0034  Score=50.45  Aligned_cols=106  Identities=14%  Similarity=0.145  Sum_probs=69.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCCCCCCcch--hhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDN--LRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~--~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ++||.|+|| |.+|..++..|+..|.  + |++++.+.......  +.. ...+++.. ..|+  .++.++|+||.++|.
T Consensus        14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~e-v~L~Di~~~~~g~a~dl~~-~~~~~i~~-t~d~--~~l~~aD~Vi~aag~   87 (303)
T 2i6t_A           14 VNKITVVGG-GELGIACTLAISAKGIADR-LVLLDLSEGTKGATMDLEI-FNLPNVEI-SKDL--SASAHSKVVIFTVNS   87 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSE-EEEECCC-----CHHHHHH-HTCTTEEE-ESCG--GGGTTCSEEEECCCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCE-EEEEcCCcchHHHHHHHhh-hcCCCeEE-eCCH--HHHCCCCEEEEcCCC
Confidence            479999996 9999999999999987  5 99998865411111  111 12234444 2454  337899999999987


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ..   ......++...|....+.+++.+.+...  .++.+|
T Consensus        88 ~~---pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~s  125 (303)
T 2i6t_A           88 LG---SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS  125 (303)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS
T ss_pred             CC---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence            42   2234556677788888888888877544  554444

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.26  E-value=0.00069  Score=52.95  Aligned_cols=102  Identities=11%  Similarity=0.124  Sum_probs=63.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC------------------c----chhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------------K----DNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------------------~----~~~~~~~~~~~~~~~~   87 (259)
                      +.+.+|+|.|+ |.+|.++++.|...|...+.+++...-..                  .    +.+.+......++.+.
T Consensus        26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  104 (251)
T 1zud_1           26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ  104 (251)
T ss_dssp             HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence            45789999996 67999999999999988688876542110                  0    1111111122344454


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      .++.+..    +.++|+||.+..                 |...-..+.++|.+.++.+|+.+...
T Consensus       105 ~~~~~~~~~~~~~~~DvVi~~~d-----------------~~~~r~~l~~~~~~~~~p~i~~~~~g  153 (251)
T 1zud_1          105 QRLTGEALKDAVARADVVLDCTD-----------------NMATRQEINAACVALNTPLITASAVG  153 (251)
T ss_dssp             SCCCHHHHHHHHHHCSEEEECCS-----------------SHHHHHHHHHHHHHTTCCEEEEEEEB
T ss_pred             ccCCHHHHHHHHhcCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCEEEEeccc
Confidence            4444322    557899998652                 11122356677888877777776543

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.26  E-value=0.00032  Score=55.61  Aligned_cols=76  Identities=13%  Similarity=0.263  Sum_probs=47.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      ..++++++|+|+ |.+|++++..|++.|.+ |++..|+.++..+..+.......+..  .|+.+....++|+||++++..
T Consensus       116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~-v~v~~R~~~~a~~l~~~~~~~~~~~~--~~~~~~~~~~~DivIn~t~~~  191 (272)
T 1p77_A          116 LRPNQHVLILGA-GGATKGVLLPLLQAQQN-IVLANRTFSKTKELAERFQPYGNIQA--VSMDSIPLQTYDLVINATSAG  191 (272)
T ss_dssp             CCTTCEEEEECC-SHHHHTTHHHHHHTTCE-EEEEESSHHHHHHHHHHHGGGSCEEE--EEGGGCCCSCCSEEEECCCC-
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHccccCCeEE--eeHHHhccCCCCEEEECCCCC
Confidence            356789999997 78999999999999966 99998864332222221110012222  232211003799999998754

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.24  E-value=0.0005  Score=54.67  Aligned_cols=75  Identities=12%  Similarity=0.150  Sum_probs=48.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      +..+++++|+|+ |.+|++++..|.+.|...|++..|+..+..+..+.......+....  +.+. ..++|+||++...
T Consensus       123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~--~~~l-~~~aDiIInaTp~  197 (281)
T 3o8q_A          123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQA--FEQL-KQSYDVIINSTSA  197 (281)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEE--GGGC-CSCEEEEEECSCC
T ss_pred             CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEee--HHHh-cCCCCEEEEcCcC
Confidence            356899999997 7899999999999997559998886443322222221111233332  2222 2578999998754

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.21  E-value=0.00029  Score=56.55  Aligned_cols=78  Identities=18%  Similarity=0.131  Sum_probs=49.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +..+++++|+|+ |.+|+.++..|.+.|...|++..|...+.. .+.+.+....-.....+-......++|+||++.+..
T Consensus       138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~-~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~  215 (297)
T 2egg_A          138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAE-RLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVG  215 (297)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHH-HHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTT
T ss_pred             CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-HHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCC
Confidence            356889999997 789999999999999855999888543322 222222110001221111111256899999998754

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=97.21  E-value=0.00047  Score=56.86  Aligned_cols=69  Identities=16%  Similarity=0.043  Sum_probs=45.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---------cCCcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------LIEVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---------~~~~d~vi~  103 (259)
                      ++|+|+||+|.||..+++.+...|+..|++++++..+. +.+++.+   +.+. ..|..+.+         ..++|++|+
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~-~~~~~~~---g~~~-~~d~~~~~~~~~~~~~~~~~~d~vi~  236 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKC-ILLTSEL---GFDA-AINYKKDNVAEQLRESCPAGVDVYFD  236 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTS---CCSE-EEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHH-HHHHHHc---CCce-EEecCchHHHHHHHHhcCCCCCEEEE
Confidence            89999999999999999999999993388888753221 1222211   2221 12333322         126999999


Q ss_pred             ccC
Q 025022          104 LAC  106 (259)
Q Consensus       104 ~a~  106 (259)
                      ++|
T Consensus       237 ~~G  239 (357)
T 2zb4_A          237 NVG  239 (357)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            997

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.16  E-value=0.00026  Score=60.48  Aligned_cols=69  Identities=20%  Similarity=0.432  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~  104 (259)
                      +.|+|+|.|+ |.+|++|++.|.++|++ |+++++++    +.++.......+..+.+|-++++      ..++|.+|-+
T Consensus         2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~-v~vId~d~----~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~   75 (461)
T 4g65_A            2 NAMKIIILGA-GQVGGTLAENLVGENND-ITIVDKDG----DRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAV   75 (461)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHTCSTTEE-EEEEESCH----HHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEEC
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCCC-EEEEECCH----HHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEE
Confidence            4689999996 99999999999999998 99998743    33333222236788999999988      6789988854


Q ss_pred             c
Q 025022          105 A  105 (259)
Q Consensus       105 a  105 (259)
                      .
T Consensus        76 t   76 (461)
T 4g65_A           76 T   76 (461)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=97.16  E-value=0.00042  Score=56.52  Aligned_cols=70  Identities=17%  Similarity=0.080  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+++|+|+||+|.+|..+++.+...|++ |++++++..+. +.++++    +.+. ..|..+.+          ..++|+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~-Vi~~~~~~~~~-~~~~~~----g~~~-~~d~~~~~~~~~i~~~~~~~~~d~  217 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGAT-VIGTVSTEEKA-ETARKL----GCHH-TINYSTQDFAEVVREITGGKGVDV  217 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCE-EEEEESSHHHH-HHHHHH----TCSE-EEETTTSCHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCHHHH-HHHHHc----CCCE-EEECCCHHHHHHHHHHhCCCCCeE
Confidence            4689999999999999999999999997 99998854221 222222    1111 12333322          236999


Q ss_pred             EEEccCC
Q 025022          101 IYHLACP  107 (259)
Q Consensus       101 vi~~a~~  107 (259)
                      +|+++|.
T Consensus       218 vi~~~g~  224 (333)
T 1wly_A          218 VYDSIGK  224 (333)
T ss_dssp             EEECSCT
T ss_pred             EEECCcH
Confidence            9999973

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.14  E-value=0.00011  Score=52.31  Aligned_cols=71  Identities=15%  Similarity=0.249  Sum_probs=47.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +++|+|+|+ |.+|+.+++.|.+.|++ |++..|+...... +.+.+   +......+-......++|+||.+.+..
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~-~a~~~---~~~~~~~~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYK-VTVAGRNIDHVRA-FAEKY---EYEYVLINDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCE-EEEEESCHHHHHH-HHHHH---TCEEEECSCHHHHHHTCSEEEECSCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEcCCHHHHHH-HHHHh---CCceEeecCHHHHhcCCCEEEEeCCCC
Confidence            789999995 99999999999999988 9999885433222 22222   222222221112256899999987644

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.14  E-value=0.00022  Score=56.76  Aligned_cols=78  Identities=12%  Similarity=0.045  Sum_probs=49.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc--cCCcCEEEEcc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL--LIEVDQIYHLA  105 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~--~~~~d~vi~~a  105 (259)
                      +.++++++|+|+ |.+|++++..|.+.|...|+++.|+..+..+..+.... ...+.....++.+..  ..++|+|||+.
T Consensus       124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_dssp             TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence            356899999997 89999999999999996588888864433222221110 011222223322221  45789999987


Q ss_pred             CC
Q 025022          106 CP  107 (259)
Q Consensus       106 ~~  107 (259)
                      ..
T Consensus       203 p~  204 (283)
T 3jyo_A          203 PM  204 (283)
T ss_dssp             ST
T ss_pred             CC
Confidence            53

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.12  E-value=0.00027  Score=57.02  Aligned_cols=78  Identities=8%  Similarity=0.014  Sum_probs=48.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC---CCcchhhhccCCCceeEeecccCcc-----ccCCcCE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT---GSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQ  100 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~---~~~~~~~~~~~~~~~~~~~~dl~~~-----~~~~~d~  100 (259)
                      +..+++++|+|+ |.+|++++..|.+.|...|++..|..+   +..+..+++...........++.+.     ...++|+
T Consensus       145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~Di  223 (312)
T 3t4e_A          145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADI  223 (312)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred             CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceE
Confidence            356889999997 899999999999999966888888622   1111111111011222222333331     1457899


Q ss_pred             EEEccCC
Q 025022          101 IYHLACP  107 (259)
Q Consensus       101 vi~~a~~  107 (259)
                      |||+...
T Consensus       224 IINaTp~  230 (312)
T 3t4e_A          224 LTNGTKV  230 (312)
T ss_dssp             EEECSST
T ss_pred             EEECCcC
Confidence            9998654

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.11  E-value=0.0022  Score=50.90  Aligned_cols=34  Identities=24%  Similarity=0.441  Sum_probs=27.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEE-cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVV-DNY   66 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~-~r~   66 (259)
                      ++||.|.|++|.+|+.+++.+.+. +.+ +++. +++
T Consensus        21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~e-Lvg~vd~~   56 (288)
T 3ijp_A           21 SMRLTVVGANGRMGRELITAIQRRKDVE-LCAVLVRK   56 (288)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTCSSEE-EEEEBCCT
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEecC
Confidence            468999999999999999999876 555 5555 443

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=97.11  E-value=0.00074  Score=55.54  Aligned_cols=69  Identities=14%  Similarity=0.078  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+++|+|+||+|.+|..+++.+...|++ |+++++++.+.. ..+++    +.+. ..|..+.+          ..++|+
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~-Vi~~~~~~~~~~-~~~~~----ga~~-~~d~~~~~~~~~~~~~~~~~~~D~  242 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLK-ILGTAGTEEGQK-IVLQN----GAHE-VFNHREVNYIDKIKKYVGEKGIDI  242 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHH-HHHHT----TCSE-EEETTSTTHHHHHHHHHCTTCEEE
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCChhHHH-HHHHc----CCCE-EEeCCCchHHHHHHHHcCCCCcEE
Confidence            4689999999999999999999999997 999887543222 22221    1211 12333322          237999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|+++|
T Consensus       243 vi~~~G  248 (351)
T 1yb5_A          243 IIEMLA  248 (351)
T ss_dssp             EEESCH
T ss_pred             EEECCC
Confidence            999986

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=97.11  E-value=0.00015  Score=59.86  Aligned_cols=69  Identities=10%  Similarity=-0.011  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+.+|+|+||+|.||..+++.+...|++ |++++++..+. +..+++    +.+. ..|..+.+          ..++|+
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~-Vi~~~~~~~~~-~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~~~~~d~  234 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAI-PLVTAGSQKKL-QMAEKL----GAAA-GFNYKKEDFSEATLKFTKGAGVNL  234 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHHHH-HHHHHH----TCSE-EEETTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHHc----CCcE-EEecCChHHHHHHHHHhcCCCceE
Confidence            4689999999999999999999999997 99988754322 122222    1111 12333222          236999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|+++|
T Consensus       235 vi~~~G  240 (354)
T 2j8z_A          235 ILDCIG  240 (354)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            999997

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=97.08  E-value=0.0052  Score=50.32  Aligned_cols=105  Identities=10%  Similarity=0.137  Sum_probs=67.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~   87 (259)
                      +...+|+|.|+ |.+|.++++.|...|...+.+++...-..                      .+.+.++.....++.+.
T Consensus        34 L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~  112 (346)
T 1y8q_A           34 LRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT  112 (346)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence            45689999995 88999999999999988788886432110                      01222222233455565


Q ss_pred             cccCccc---cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           88 HDVTEPL---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        88 ~dl~~~~---~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      .++.+..   +.++|+||.+..                 |...-..+.++|.+.++.+|..++.+.+|
T Consensus       113 ~~~~~~~~~~~~~~dvVv~~~d-----------------~~~~r~~ln~~~~~~~ip~i~~~~~G~~G  163 (346)
T 1y8q_A          113 EDIEKKPESFFTQFDAVCLTCC-----------------SRDVIVKVDQICHKNSIKFFTGDVFGYHG  163 (346)
T ss_dssp             SCGGGCCHHHHTTCSEEEEESC-----------------CHHHHHHHHHHHHHTTCEEEEEEEEBTEE
T ss_pred             cccCcchHHHhcCCCEEEEcCC-----------------CHHHHHHHHHHHHHcCCCEEEEeecccEE
Confidence            5554322   678999998642                 12233457788888888888876655443

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=97.08  E-value=0.00083  Score=55.02  Aligned_cols=36  Identities=11%  Similarity=0.034  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+++|+|+|++|.+|..+++.+...|++ |+++.++.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~-V~~~~~~~  190 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCY-VVGSAGSK  190 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            4689999999999999999999999997 99988753

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.07  E-value=0.00034  Score=58.01  Aligned_cols=73  Identities=14%  Similarity=0.176  Sum_probs=48.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~  103 (259)
                      ...+++|+|+|+ |.+|..+++.|...|++ |++++++..... ...+... ..   +.+|..+..     ..++|+||+
T Consensus       163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~-V~~~d~~~~~~~-~~~~~~g-~~---~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          163 GVAPASVVILGG-GTVGTNAAKIALGMGAQ-VTILDVNHKRLQ-YLDDVFG-GR---VITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             BBCCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHHHHH-HHHHHTT-TS---EEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEECCHHHHH-HHHHhcC-ce---EEEecCCHHHHHHHHhCCCEEEE
Confidence            356789999999 99999999999999997 999988543221 1222111 11   222332222     567999999


Q ss_pred             ccCCC
Q 025022          104 LACPA  108 (259)
Q Consensus       104 ~a~~~  108 (259)
                      +++..
T Consensus       236 ~~g~~  240 (369)
T 2eez_A          236 AVLVP  240 (369)
T ss_dssp             CCC--
T ss_pred             CCCCC
Confidence            98743

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.05  E-value=0.0036  Score=48.59  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=26.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDN   65 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r   65 (259)
                      |+|.|.|++|.+|+.+++.+.+. +++ +++...
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~e-lva~~d   33 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLT-LSAELD   33 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCE-EEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCE-EEEEEc
Confidence            58999999999999999999876 777 665544

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=97.03  E-value=0.0067  Score=49.82  Aligned_cols=101  Identities=18%  Similarity=0.114  Sum_probs=64.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~   87 (259)
                      +.+.+|+|.|+ |.+|.++++.|...|...+.++++..-...                      +.+........++.+.
T Consensus       116 L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  194 (353)
T 3h5n_A          116 LKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIA  194 (353)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEee
Confidence            34689999996 889999999999999887888886432110                      1112222223455555


Q ss_pred             cccCccc----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEec
Q 025022           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (259)
Q Consensus        88 ~dl~~~~----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss  147 (259)
                      .++.+..    +.++|+||.+....         .       ..-..+.++|.+.++.+|+.+.
T Consensus       195 ~~i~~~~~~~~~~~~DlVvd~~Dn~---------~-------~~r~~ln~~c~~~~~p~i~~~~  242 (353)
T 3h5n_A          195 LNINDYTDLHKVPEADIWVVSADHP---------F-------NLINWVNKYCVRANQPYINAGY  242 (353)
T ss_dssp             CCCCSGGGGGGSCCCSEEEECCCCS---------T-------THHHHHHHHHHHTTCCEEEEEE
T ss_pred             cccCchhhhhHhccCCEEEEecCCh---------H-------HHHHHHHHHHHHhCCCEEEEEE
Confidence            5554433    67899999865211         1       0123466788888887777654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=97.01  E-value=0.00054  Score=56.17  Aligned_cols=69  Identities=10%  Similarity=-0.018  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+++|+|+|++|.+|..+++.+...|++ |+++++++.+. +..+++    +.+.+ .|..+.+          ..++|+
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~-Vi~~~~~~~~~-~~~~~~----ga~~~-~d~~~~~~~~~~~~~~~~~~~d~  238 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGAR-VIATAGSEDKL-RRAKAL----GADET-VNYTHPDWPKEVRRLTGGKGADK  238 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCE-EEEEESSHHHH-HHHHHH----TCSEE-EETTSTTHHHHHHHHTTTTCEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCHHHH-HHHHhc----CCCEE-EcCCcccHHHHHHHHhCCCCceE
Confidence            4689999999999999999999999997 99988753322 222221    11111 2333222          137999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|+++|
T Consensus       239 vi~~~g  244 (343)
T 2eih_A          239 VVDHTG  244 (343)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            999998

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.99  E-value=0.00067  Score=51.90  Aligned_cols=69  Identities=17%  Similarity=0.170  Sum_probs=44.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEE-EcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      .|++|+|.|+| +|.+|.++++.|.+.|++ |++ .+|+..... .+....   ++.... +.. +...++|+||.+.
T Consensus        20 ~m~mmkI~IIG-~G~mG~~la~~l~~~g~~-V~~v~~r~~~~~~-~l~~~~---g~~~~~-~~~-~~~~~aDvVilav   89 (220)
T 4huj_A           20 FQSMTTYAIIG-AGAIGSALAERFTAAQIP-AIIANSRGPASLS-SVTDRF---GASVKA-VEL-KDALQADVVILAV   89 (220)
T ss_dssp             GGGSCCEEEEE-CHHHHHHHHHHHHHTTCC-EEEECTTCGGGGH-HHHHHH---TTTEEE-CCH-HHHTTSSEEEEES
T ss_pred             hhcCCEEEEEC-CCHHHHHHHHHHHhCCCE-EEEEECCCHHHHH-HHHHHh---CCCccc-ChH-HHHhcCCEEEEeC
Confidence            35678999999 799999999999999998 777 777543322 222211   111211 111 1156789998865

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.98  E-value=0.0039  Score=51.34  Aligned_cols=69  Identities=22%  Similarity=0.220  Sum_probs=40.1

Q ss_pred             CEEEEEcCchhhhHHHHH-HHHhcCC--CeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-cCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVD-KLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~-~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~d~vi~~a~  106 (259)
                      |+|.|.||||++|+.|++ .|.++.+  .++..+..+...  ..+..+.. ....+  .+..+.+ +.++|+||.+.+
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG--~~~~~~~~-~~~~~--~~~~~~~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG--VPAPNFGK-DAGML--HDAFDIESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT--SBCCCSSS-CCCBC--EETTCHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccC--cCHHHhCC-CceEE--EecCChhHhccCCEEEECCC
Confidence            689999999999999999 6666653  235555433221  11111111 11222  2332222 578999998875

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.96  E-value=0.0013  Score=50.08  Aligned_cols=66  Identities=12%  Similarity=0.119  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      ++|+|.|+| +|.+|+.+++.|.+.|++ |++.+|+...    .+.... .++...  ++.+ ...++|+||.+..
T Consensus        27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~-V~~~~r~~~~----~~~~~~-~g~~~~--~~~~-~~~~~DvVi~av~   92 (215)
T 2vns_A           27 EAPKVGILG-SGDFARSLATRLVGSGFK-VVVGSRNPKR----TARLFP-SAAQVT--FQEE-AVSSPEVIFVAVF   92 (215)
T ss_dssp             --CCEEEEC-CSHHHHHHHHHHHHTTCC-EEEEESSHHH----HHHHSB-TTSEEE--EHHH-HTTSCSEEEECSC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCE-EEEEeCCHHH----HHHHHH-cCCcee--cHHH-HHhCCCEEEECCC
Confidence            467999999 899999999999999998 8888875322    222111 133332  2211 1568999998764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.95  E-value=0.0012  Score=53.73  Aligned_cols=69  Identities=16%  Similarity=0.095  Sum_probs=46.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+.+|+|+||+|.+|...++.+...|.+ |+++.++..+. +..+++    +.+.+ .|..+.+          ..++|+
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~-~~~~~~----ga~~~-~~~~~~~~~~~~~~~~~~~g~D~  220 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAH-TIAVASTDEKL-KIAKEY----GAEYL-INASKEDILRQVLKFTNGKGVDA  220 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSHHHH-HHHHHT----TCSEE-EETTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHHH-HHHHHc----CCcEE-EeCCCchHHHHHHHHhCCCCceE
Confidence            4689999999999999999999999997 99988753322 222222    11111 1222222          246999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|+++|
T Consensus       221 vid~~g  226 (334)
T 3qwb_A          221 SFDSVG  226 (334)
T ss_dssp             EEECCG
T ss_pred             EEECCC
Confidence            999987

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.95  E-value=0.0012  Score=54.11  Aligned_cols=71  Identities=20%  Similarity=0.162  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIY  102 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~vi  102 (259)
                      .+.+|+|+||+|.+|...++.+...|.+ |+++.++..+. +..+++ ...  ..+..+ .+..        ..++|++|
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~-~~~~~~-ga~--~v~~~~-~~~~~~v~~~~~~~g~Dvvi  232 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAK-VIAVVNRTAAT-EFVKSV-GAD--IVLPLE-EGWAKAVREATGGAGVDMVV  232 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSGGGH-HHHHHH-TCS--EEEESS-TTHHHHHHHHTTTSCEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHhc-CCc--EEecCc-hhHHHHHHHHhCCCCceEEE
Confidence            4689999999999999999999999997 99988754432 233332 111  122222 1111        23799999


Q ss_pred             EccCC
Q 025022          103 HLACP  107 (259)
Q Consensus       103 ~~a~~  107 (259)
                      +++|.
T Consensus       233 d~~g~  237 (342)
T 4eye_A          233 DPIGG  237 (342)
T ss_dssp             ESCC-
T ss_pred             ECCch
Confidence            99873

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.94  E-value=0.00083  Score=50.92  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      |+|+|+||+|++|+++++.|.+.|++ |++++|+.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~-V~~~~r~~   34 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHE-IVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCE-EEEEeCCH
Confidence            58999999999999999999999997 99988854

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.91  E-value=0.00066  Score=53.81  Aligned_cols=71  Identities=17%  Similarity=0.162  Sum_probs=46.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ..+++++|+|+ |.+|++++..|.+.|...|++..|+..+..... .     .+.....+-......++|+||++...
T Consensus       115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la-~-----~~~~~~~~~~~~~~~~aDiVInaTp~  185 (277)
T 3don_A          115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWS-L-----NINKINLSHAESHLDEFDIIINTTPA  185 (277)
T ss_dssp             GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCC-S-----CCEEECHHHHHHTGGGCSEEEECCC-
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-H-----hcccccHhhHHHHhcCCCEEEECccC
Confidence            46789999996 899999999999999944888888644322111 1     22222221111115678999998643

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.90  E-value=0.0045  Score=48.80  Aligned_cols=76  Identities=26%  Similarity=0.301  Sum_probs=51.7

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc-chhhhcc----------------------CCCce-
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWI----------------------GHPRF-   83 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~----------------------~~~~~-   83 (259)
                      .+.++|+|+|.|| |-+|...++.|++.|+. |+++........ ..+..+.                      ...++ 
T Consensus         9 ~~l~~k~VLVVGg-G~va~rka~~Ll~~Ga~-VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~   86 (274)
T 1kyq_A            9 HQLKDKRILLIGG-GEVGLTRLYKLMPTGCK-LTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIY   86 (274)
T ss_dssp             ECCTTCEEEEEEE-SHHHHHHHHHHGGGTCE-EEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCCS
T ss_pred             EEcCCCEEEEECC-cHHHHHHHHHHHhCCCE-EEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCee
Confidence            3467899999995 89999999999999998 877775432111 1222221                      22355 


Q ss_pred             eEeecccCccccC------CcCEEEEcc
Q 025022           84 ELIRHDVTEPLLI------EVDQIYHLA  105 (259)
Q Consensus        84 ~~~~~dl~~~~~~------~~d~vi~~a  105 (259)
                      .++..++...++.      ++|.||-+.
T Consensus        87 ~~i~~~~~~~dL~~l~~~~~adlViaat  114 (274)
T 1kyq_A           87 EYIRSDFKDEYLDLENENDAWYIIMTCI  114 (274)
T ss_dssp             EEECSSCCGGGGCCSSTTCCEEEEEECC
T ss_pred             EEEcCCCCHHHHhhcccCCCeEEEEEcC
Confidence            7777777666665      788887544

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.87  E-value=0.0013  Score=54.14  Aligned_cols=69  Identities=13%  Similarity=0.063  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---------cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---------~~~~d~v  101 (259)
                      .+.+|+|+||+|.+|..+++.+...|.+ |++++++..+. +..+++    +.+.+ .|..+.+         ..++|++
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~-~~~~~l----Ga~~~-~~~~~~~~~~~~~~~~~~g~Dvv  239 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAE-VYATAGSTGKC-EACERL----GAKRG-INYRSEDFAAVIKAETGQGVDII  239 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHHH-HHHHHH----TCSEE-EETTTSCHHHHHHHHHSSCEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHhc----CCCEE-EeCCchHHHHHHHHHhCCCceEE
Confidence            4679999999999999999999999997 99998754322 222222    11111 1222222         2479999


Q ss_pred             EEccC
Q 025022          102 YHLAC  106 (259)
Q Consensus       102 i~~a~  106 (259)
                      |+++|
T Consensus       240 id~~g  244 (353)
T 4dup_A          240 LDMIG  244 (353)
T ss_dssp             EESCC
T ss_pred             EECCC
Confidence            99987

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.86  E-value=0.006  Score=50.32  Aligned_cols=93  Identities=16%  Similarity=0.126  Sum_probs=51.4

Q ss_pred             CCEEEEEcCchhhhHHHHHH-HHhcCCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-cCCcCEEEEccCC
Q 025022           32 NMRILVTGGAGFIGSHLVDK-LMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLACP  107 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~-L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~d~vi~~a~~  107 (259)
                      |++|.|.||+|++|+.+++. |.++++.  .++.+..++...  .+... ....+.+.  +..+.+ +.++|+||.+.|.
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~~~-~g~~i~~~--~~~~~~~~~~~DvVf~a~g~   75 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAPSF-GGTTGTLQ--DAFDLEALKALDIIVTCQGG   75 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCGG-GTCCCBCE--ETTCHHHHHTCSEEEECSCH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--Ccccc-CCCceEEE--ecCChHHhcCCCEEEECCCc
Confidence            36999999999999999995 5444432  355555432111  11111 11122222  222222 4689999998752


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEec
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss  147 (259)
                                        ......+..+.+.|.  .+|=.||
T Consensus        76 ------------------~~s~~~a~~~~~~G~k~vVID~ss   99 (367)
T 1t4b_A           76 ------------------DYTNEIYPKLRESGWQGYWIDAAS   99 (367)
T ss_dssp             ------------------HHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             ------------------hhHHHHHHHHHHCCCCEEEEcCCh
Confidence                              222455666667776  4444444

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.86  E-value=0.0086  Score=50.76  Aligned_cols=88  Identities=19%  Similarity=0.275  Sum_probs=55.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcC-CC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENE-KN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g-~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~  100 (259)
                      .++|+|.| .|.||+.+++.|+++. ..  .|++.+..... .+..+..    ++.+...+++..+        +.+.|+
T Consensus        13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~-~~~~~~~----g~~~~~~~Vdadnv~~~l~aLl~~~Dv   86 (480)
T 2ph5_A           13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK-VDVAQQY----GVSFKLQQITPQNYLEVIGSTLEENDF   86 (480)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS-CCHHHHH----TCEEEECCCCTTTHHHHTGGGCCTTCE
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhh-hhHHhhc----CCceeEEeccchhHHHHHHHHhcCCCE
Confidence            36899999 7999999999999874 31  37777654433 2222221    3444444443331        344599


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEE
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL  143 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i  143 (259)
                      |||++-+.                  ....++++|.++|+.++
T Consensus        87 VIN~s~~~------------------~~l~Im~acleaGv~Yl  111 (480)
T 2ph5_A           87 LIDVSIGI------------------SSLALIILCNQKGALYI  111 (480)
T ss_dssp             EEECCSSS------------------CHHHHHHHHHHHTCEEE
T ss_pred             EEECCccc------------------cCHHHHHHHHHcCCCEE
Confidence            99865322                  11468999999997555

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.84  E-value=0.0012  Score=53.59  Aligned_cols=70  Identities=17%  Similarity=0.095  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+.+|+|+||+|.+|...++.+...|.+ |+++.+++.+. +..+++ .  .-..+  |..+.+          ..++|+
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~-~~~~~~-G--a~~~~--~~~~~~~~~~~~~~~~~~g~Dv  212 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAK-LIGTVSSPEKA-AHAKAL-G--AWETI--DYSHEDVAKRVLELTDGKKCPV  212 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCE-EEEEESSHHHH-HHHHHH-T--CSEEE--ETTTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHH-HHHHHc-C--CCEEE--eCCCccHHHHHHHHhCCCCceE
Confidence            4689999999999999999999999997 99988754322 222222 1  11112  222222          247999


Q ss_pred             EEEccCC
Q 025022          101 IYHLACP  107 (259)
Q Consensus       101 vi~~a~~  107 (259)
                      +|+++|.
T Consensus       213 vid~~g~  219 (325)
T 3jyn_A          213 VYDGVGQ  219 (325)
T ss_dssp             EEESSCG
T ss_pred             EEECCCh
Confidence            9999873

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.80  E-value=0.0017  Score=52.19  Aligned_cols=69  Identities=16%  Similarity=0.075  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCc-cc----cCCcCEEEEcc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PL----LIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~-~~----~~~~d~vi~~a  105 (259)
                      .+.+|+|+|++|.+|...++.+...|.+ |+++.+++.+.. ..+++    +.+.+ .|..+ .+    ..++|++|+ +
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~-Vi~~~~~~~~~~-~~~~~----ga~~~-~~~~~~~~~~~~~~~~d~vid-~  196 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLR-VLAAASRPEKLA-LPLAL----GAEEA-ATYAEVPERAKAWGGLDLVLE-V  196 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSGGGSH-HHHHT----TCSEE-EEGGGHHHHHHHTTSEEEEEE-C
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHhc----CCCEE-EECCcchhHHHHhcCceEEEE-C
Confidence            5789999999999999999999999997 999988544332 22222    22211 22222 22    368999999 8


Q ss_pred             CC
Q 025022          106 CP  107 (259)
Q Consensus       106 ~~  107 (259)
                      |.
T Consensus       197 g~  198 (302)
T 1iz0_A          197 RG  198 (302)
T ss_dssp             SC
T ss_pred             CH
Confidence            63

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.80  E-value=0.0061  Score=50.35  Aligned_cols=70  Identities=21%  Similarity=0.218  Sum_probs=40.3

Q ss_pred             CCEEEEEcCchhhhHHHHH-HHHhcCC--CeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-cCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVD-KLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~-~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~d~vi~~a~  106 (259)
                      .++|.|.||||++|+.|++ .|.++.+  .++..+..+...  ..+..+.. ....+  .++.+.+ +.++|+||.+.+
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG--~~~~~~~~-~~~~v--~~~~~~~~~~~vDvvf~a~~   77 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAG--GKAPSFAK-NETTL--KDATSIDDLKKCDVIITCQG   77 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTT--SBCCTTCC-SCCBC--EETTCHHHHHTCSEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcC--CCHHHcCC-CceEE--EeCCChhHhcCCCEEEECCC
Confidence            4799999999999999999 6666653  235555433211  11111111 11112  2332222 568899998875

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.80  E-value=0.0037  Score=48.45  Aligned_cols=35  Identities=23%  Similarity=0.406  Sum_probs=28.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEE-EcCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNY   66 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~-~~r~   66 (259)
                      |++|||.|+|+ |.+|+.+++.+.+++. ++++ +++.
T Consensus         1 M~MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~   36 (243)
T 3qy9_A            1 MASMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENT   36 (243)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSS
T ss_pred             CCceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecC
Confidence            45789999999 9999999999999877 4666 4543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.78  E-value=0.0036  Score=49.29  Aligned_cols=66  Identities=15%  Similarity=0.106  Sum_probs=45.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +++++|+|+ |..|++++..|.+.|.+ |++..|..++..+.. + +   ++....  +.+  +.++|+||++....
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~-v~V~nRt~~ka~~la-~-~---~~~~~~--~~~--l~~~DiVInaTp~G  183 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQ-VSVLNRSSRGLDFFQ-R-L---GCDCFM--EPP--KSAFDLIINATSAS  183 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSCTTHHHHH-H-H---TCEEES--SCC--SSCCSEEEECCTTC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHH-H-C---CCeEec--HHH--hccCCEEEEcccCC
Confidence            789999996 99999999999999954 999988755433322 2 2   233322  222  23799999986543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.78  E-value=0.0091  Score=47.52  Aligned_cols=100  Identities=15%  Similarity=0.181  Sum_probs=64.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC---------------------CcchhhhccCCCceeEeec
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG---------------------SKDNLRKWIGHPRFELIRH   88 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~---------------------~~~~~~~~~~~~~~~~~~~   88 (259)
                      +...+|+|.|+ |.+|.++++.|...|...+.+++...-.                     ..+.++.......++.+..
T Consensus        34 L~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           34 IRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             HhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            55689999995 8899999999999998878888764311                     0112222222334555665


Q ss_pred             ccCccc-----c-----------CCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEec
Q 025022           89 DVTEPL-----L-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (259)
Q Consensus        89 dl~~~~-----~-----------~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss  147 (259)
                      ++++.+     +           .++|+||.+.-                 |...-..+.++|.+.++.+|+.+.
T Consensus       113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D-----------------n~~~R~~in~~c~~~~~Pli~~gv  170 (292)
T 3h8v_A          113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD-----------------NFEARMTINTACNELGQTWMESGV  170 (292)
T ss_dssp             CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS-----------------SHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             cCCcHHHHHHHhhhhcccccccCCCCCEEEECCc-----------------chhhhhHHHHHHHHhCCCEEEeee
Confidence            665421     1           57899997652                 222224577888888887776654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.77  E-value=0.0019  Score=53.37  Aligned_cols=35  Identities=23%  Similarity=0.210  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      .+.+|+|+||+|.+|..+++.+...|++ |++++++
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~-Vi~~~~~  197 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCH-VIGTCSS  197 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCE-EEEEECC
Confidence            4679999999999999999999999997 9998875

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.76  E-value=0.0019  Score=53.37  Aligned_cols=66  Identities=14%  Similarity=0.115  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC---CCCcchhhhccCCCceeEeecccCccc--------cCCcC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---TGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVD   99 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d   99 (259)
                      ++.+|+|+|+ |.+|..+++.+...|.+ |++++++.   .+. +..+++    +.+.+  | .+ +        ..++|
T Consensus       180 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~-Vi~~~~~~~~~~~~-~~~~~~----ga~~v--~-~~-~~~~~~~~~~~~~d  248 (366)
T 2cdc_A          180 NCRKVLVVGT-GPIGVLFTLLFRTYGLE-VWMANRREPTEVEQ-TVIEET----KTNYY--N-SS-NGYDKLKDSVGKFD  248 (366)
T ss_dssp             TTCEEEEESC-HHHHHHHHHHHHHHTCE-EEEEESSCCCHHHH-HHHHHH----TCEEE--E-CT-TCSHHHHHHHCCEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEeCCccchHHH-HHHHHh----CCcee--c-hH-HHHHHHHHhCCCCC
Confidence            3789999999 99999999999999996 99998864   221 222222    33333  3 22 2        14699


Q ss_pred             EEEEccCC
Q 025022          100 QIYHLACP  107 (259)
Q Consensus       100 ~vi~~a~~  107 (259)
                      ++|+++|.
T Consensus       249 ~vid~~g~  256 (366)
T 2cdc_A          249 VIIDATGA  256 (366)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.71  E-value=0.0021  Score=52.58  Aligned_cols=69  Identities=16%  Similarity=0.083  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+.+|+|+|++|.+|...++.+...|.+ |++++++..+. +.++++    +.+.+ .|..+.+          ..++|+
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~-Vi~~~~~~~~~-~~~~~l----ga~~~-~~~~~~~~~~~~~~~~~~~g~Dv  216 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFR-LIAVTRNNKHT-EELLRL----GAAYV-IDTSTAPLYETVMELTNGIGADA  216 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCE-EEEEESSSTTH-HHHHHH----TCSEE-EETTTSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHhC----CCcEE-EeCCcccHHHHHHHHhCCCCCcE
Confidence            4689999999999999999999999997 99998865432 233332    11111 1222222          247999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|+++|
T Consensus       217 vid~~g  222 (340)
T 3gms_A          217 AIDSIG  222 (340)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            999987

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.69  E-value=0.013  Score=49.94  Aligned_cols=73  Identities=18%  Similarity=0.211  Sum_probs=55.2

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      .++++++|+|.|+ |-+|...++.|++.|.. |++++....   ..+..+....+++++..+..+.++.++|.||-+-
T Consensus         8 ~~l~~~~vlVvGg-G~va~~k~~~L~~~ga~-V~vi~~~~~---~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at   80 (457)
T 1pjq_A            8 CQLRDRDCLIVGG-GDVAERKARLLLEAGAR-LTVNALTFI---PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT   80 (457)
T ss_dssp             ECCBTCEEEEECC-SHHHHHHHHHHHHTTBE-EEEEESSCC---HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC
T ss_pred             EECCCCEEEEECC-CHHHHHHHHHHHhCcCE-EEEEcCCCC---HHHHHHHhcCCEEEEECCCCccccCCccEEEEcC
Confidence            3467899999996 88999999999999998 888875322   2333333335788888888777788899888643

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.68  E-value=0.0015  Score=53.54  Aligned_cols=70  Identities=19%  Similarity=0.213  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------c--CCcC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------L--IEVD   99 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~--~~~d   99 (259)
                      .+++|+|+|++|.+|..+++.+... |.+ |+++++++.+. +..+++ .   .+.+ .|..+.+        .  .++|
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~-Vi~~~~~~~~~-~~~~~~-g---~~~~-~~~~~~~~~~~~~~~~~~~~~d  242 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAV-EAAKRA-G---ADYV-INASMQDPLAEIRRITESKGVD  242 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCE-EEEEESSHHHH-HHHHHH-T---CSEE-EETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCe-EEEEcCCHHHH-HHHHHh-C---CCEE-ecCCCccHHHHHHHHhcCCCce
Confidence            4689999999999999999999999 997 99888754322 222222 1   1111 1222221        1  4799


Q ss_pred             EEEEccCC
Q 025022          100 QIYHLACP  107 (259)
Q Consensus       100 ~vi~~a~~  107 (259)
                      ++|+++|.
T Consensus       243 ~vi~~~g~  250 (347)
T 1jvb_A          243 AVIDLNNS  250 (347)
T ss_dssp             EEEESCCC
T ss_pred             EEEECCCC
Confidence            99999973

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.63  E-value=0.0016  Score=54.67  Aligned_cols=73  Identities=19%  Similarity=0.302  Sum_probs=47.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ..+++|+|+|+ |.+|+.+++.|...|...|+++.|...+..+..+. +   +.+.+..+-......++|+||.+.+.
T Consensus       165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~-~---g~~~~~~~~l~~~l~~aDvVi~at~~  237 (404)
T 1gpj_A          165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARD-L---GGEAVRFDELVDHLARSDVVVSATAA  237 (404)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHH-H---TCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred             ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-c---CCceecHHhHHHHhcCCCEEEEccCC
Confidence            57899999997 99999999999999985599988854322111122 1   22222211111115689999998764

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.60  E-value=0.0021  Score=52.60  Aligned_cols=66  Identities=17%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+.+|+|+||+|.+|...++.+...|.+ |+++ ++..+ .+..+++    +.+.+  | .+.+          ..++|+
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~-Vi~~-~~~~~-~~~~~~l----Ga~~i--~-~~~~~~~~~~~~~~~~g~D~  219 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGAR-VFAT-ARGSD-LEYVRDL----GATPI--D-ASREPEDYAAEHTAGQGFDL  219 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEE-ECHHH-HHHHHHH----TSEEE--E-TTSCHHHHHHHHHTTSCEEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEE-eCHHH-HHHHHHc----CCCEe--c-cCCCHHHHHHHHhcCCCceE
Confidence            4679999999999999999999999997 8888 43222 2233332    23332  2 2222          247999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|+++|
T Consensus       220 vid~~g  225 (343)
T 3gaz_A          220 VYDTLG  225 (343)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            999987

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.60  E-value=0.002  Score=52.66  Aligned_cols=35  Identities=20%  Similarity=0.398  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      .+.+|.|.||||++|+.|++.|.++...++..+..
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S   46 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSS   46 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            46799999999999999999999986655666654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.59  E-value=0.0039  Score=49.61  Aligned_cols=65  Identities=15%  Similarity=0.251  Sum_probs=44.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      +|+|.|+|+||.+|..+++.|.+.|++ |++.+|+..... .+..    .++..  .+.. ....++|+||.+.
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~-V~~~~r~~~~~~-~~~~----~g~~~--~~~~-~~~~~aDvVi~av   75 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHH-LAAIEIAPEGRD-RLQG----MGIPL--TDGD-GWIDEADVVVLAL   75 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSE-EEEECCSHHHHH-HHHH----TTCCC--CCSS-GGGGTCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCHHHHH-HHHh----cCCCc--CCHH-HHhcCCCEEEEcC
Confidence            479999999999999999999999997 988887533211 2222    12221  1221 1256899999876

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.56  E-value=0.0021  Score=53.35  Aligned_cols=69  Identities=19%  Similarity=0.231  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYH  103 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~  103 (259)
                      .+.+|+|+||+|.+|...++.+...|.+ |+++.+.  ...+.++++    +.+.+ .|..+.+       ..++|++|+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~-Vi~~~~~--~~~~~~~~l----Ga~~v-~~~~~~~~~~~~~~~~g~D~vid  254 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAH-VTAVCSQ--DASELVRKL----GADDV-IDYKSGSVEEQLKSLKPFDFILD  254 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECG--GGHHHHHHT----TCSEE-EETTSSCHHHHHHTSCCBSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEeCh--HHHHHHHHc----CCCEE-EECCchHHHHHHhhcCCCCEEEE
Confidence            4679999999999999999999999987 8887742  222333332    22211 1222211       357999999


Q ss_pred             ccCC
Q 025022          104 LACP  107 (259)
Q Consensus       104 ~a~~  107 (259)
                      ++|.
T Consensus       255 ~~g~  258 (375)
T 2vn8_A          255 NVGG  258 (375)
T ss_dssp             SSCT
T ss_pred             CCCC
Confidence            9873

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.54  E-value=0.013  Score=49.90  Aligned_cols=76  Identities=16%  Similarity=0.031  Sum_probs=52.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCC-cCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-VDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~-~d~vi~~a~~~  108 (259)
                      +.+++|+|.|. |..|.++++.|.++|+. |.+.+++........+. +...++.+..+...+..+.+ +|.||...|..
T Consensus         7 ~~~k~v~viG~-G~sG~s~A~~l~~~G~~-V~~~D~~~~~~~~~~~~-L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~   83 (451)
T 3lk7_A            7 FENKKVLVLGL-ARSGEAAARLLAKLGAI-VTVNDGKPFDENPTAQS-LLEEGIKVVCGSHPLELLDEDFCYMIKNPGIP   83 (451)
T ss_dssp             TTTCEEEEECC-TTTHHHHHHHHHHTTCE-EEEEESSCGGGCHHHHH-HHHTTCEEEESCCCGGGGGSCEEEEEECTTSC
T ss_pred             cCCCEEEEEee-CHHHHHHHHHHHhCCCE-EEEEeCCcccCChHHHH-HHhCCCEEEECCChHHhhcCCCCEEEECCcCC
Confidence            56789999997 88999999999999999 99998854321111111 12236777666544433445 89999887754

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.52  E-value=0.0062  Score=48.29  Aligned_cols=68  Identities=19%  Similarity=0.247  Sum_probs=46.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEee-cccCccccCCcCEEEEccCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ..+++++|+|+ |..|++++..|.+.|...|+++.|...+.. .+..     .+.... .|+.+  . ++|+|||+...
T Consensus       120 ~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~-~La~-----~~~~~~~~~l~~--l-~~DivInaTp~  188 (282)
T 3fbt_A          120 IKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTS-EIYG-----EFKVISYDELSN--L-KGDVIINCTPK  188 (282)
T ss_dssp             CTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHH-HHCT-----TSEEEEHHHHTT--C-CCSEEEECSST
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-HHHH-----hcCcccHHHHHh--c-cCCEEEECCcc
Confidence            46789999996 889999999999999965888888543322 2221     222222 22322  4 78999998743

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=96.51  E-value=0.0049  Score=44.37  Aligned_cols=65  Identities=14%  Similarity=0.098  Sum_probs=43.4

Q ss_pred             chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc--hhhhccC--CCceeEeecccCcc--c------------cCCcCEEE
Q 025022           41 AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NLRKWIG--HPRFELIRHDVTEP--L------------LIEVDQIY  102 (259)
Q Consensus        41 tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~~~~~--~~~~~~~~~dl~~~--~------------~~~~d~vi  102 (259)
                      +|.++.+.++.|.+.|++ |++..|.......  .......  ......+.+|++++  +            +++ |++|
T Consensus        25 s~~p~~a~a~~La~~Ga~-vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLV  102 (157)
T 3gxh_A           25 SGLPNEQQFSLLKQAGVD-VVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLV  102 (157)
T ss_dssp             EBCCCHHHHHHHHHTTCC-EEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEE
T ss_pred             cCCCCHHHHHHHHHcCCC-EEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEE
Confidence            357899999999999999 7776665432211  1111111  23456678899888  4            455 9999


Q ss_pred             EccCC
Q 025022          103 HLACP  107 (259)
Q Consensus       103 ~~a~~  107 (259)
                      ||||.
T Consensus       103 nnAgg  107 (157)
T 3gxh_A          103 HCLAN  107 (157)
T ss_dssp             ECSBS
T ss_pred             ECCCC
Confidence            99985

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.48  E-value=0.0065  Score=49.08  Aligned_cols=70  Identities=13%  Similarity=0.097  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCC--CeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      ..|+|.|.| .|.+|..+++.|.+.|+  + |++.+|+..... ...+.   ..+.....|+.+....++|+||.+..
T Consensus        32 ~~~kI~IIG-~G~mG~slA~~l~~~G~~~~-V~~~dr~~~~~~-~a~~~---G~~~~~~~~~~~~~~~~aDvVilavp  103 (314)
T 3ggo_A           32 SMQNVLIVG-VGFMGGSFAKSLRRSGFKGK-IYGYDINPESIS-KAVDL---GIIDEGTTSIAKVEDFSPDFVMLSSP  103 (314)
T ss_dssp             SCSEEEEES-CSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHH-HHHHT---TSCSEEESCTTGGGGGCCSEEEECSC
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHhCCCCCE-EEEEECCHHHHH-HHHHC---CCcchhcCCHHHHhhccCCEEEEeCC
Confidence            347999999 79999999999999998  6 999988543221 11111   11112223333213568999998763

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=96.41  E-value=0.03  Score=49.39  Aligned_cols=101  Identities=13%  Similarity=0.173  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEeec
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIRH   88 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~   88 (259)
                      ...+|+|.|+ |.+|.++++.|...|...+.+++...-...                      +.++.......++.+..
T Consensus        16 ~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~   94 (640)
T 1y8q_B           16 AGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHD   94 (640)
T ss_dssp             HHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEES
T ss_pred             hcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEec
Confidence            4579999996 889999999999999887888875421100                      11112222234556666


Q ss_pred             ccCccc-----cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022           89 DVTEPL-----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus        89 dl~~~~-----~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      ++.+..     +.++|+||.+..                 |...-..+.+.|.+.++.+|+.++.+
T Consensus        95 ~i~~~~~~~~~~~~~DlVvda~D-----------------n~~aR~~ln~~c~~~~iPlI~~g~~G  143 (640)
T 1y8q_B           95 SIMNPDYNVEFFRQFILVMNALD-----------------NRAARNHVNRMCLAADVPLIESGTAG  143 (640)
T ss_dssp             CTTSTTSCHHHHTTCSEEEECCS-----------------CHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             ccchhhhhHhhhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEEEec
Confidence            664322     578999998642                 22333456778888888777766544

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.40  E-value=0.0013  Score=54.28  Aligned_cols=75  Identities=19%  Similarity=0.285  Sum_probs=47.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCc--cccCCcCEEEEccCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE--PLLIEVDQIYHLACP  107 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~--~~~~~~d~vi~~a~~  107 (259)
                      ..+++|+|+|+ |.+|+.+++.+...|.+ |++++|+..+.. .+++... ..+..+..+..+  ....++|+||++++.
T Consensus       165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~-V~v~dr~~~r~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~DvVI~~~~~  240 (361)
T 1pjc_A          165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQ-VQIFDINVERLS-YLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLV  240 (361)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHHHHH-HHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEeCCHHHHH-HHHHhhC-ceeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence            44589999998 99999999999999996 999988543222 1222111 112122111111  114579999999875


Q ss_pred             C
Q 025022          108 A  108 (259)
Q Consensus       108 ~  108 (259)
                      .
T Consensus       241 ~  241 (361)
T 1pjc_A          241 P  241 (361)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.38  E-value=0.0061  Score=49.66  Aligned_cols=65  Identities=9%  Similarity=0.062  Sum_probs=49.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      .++++|+|. |.+|+.+++.|.++|+  |++++++++...  ++    ..++.++.+|.++++      ..++|.++-+.
T Consensus       115 ~~~viI~G~-G~~g~~l~~~L~~~g~--v~vid~~~~~~~--~~----~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~  185 (336)
T 1lnq_A          115 SRHVVICGW-SESTLECLRELRGSEV--FVLAEDENVRKK--VL----RSGANFVHGDPTRVSDLEKANVRGARAVIVDL  185 (336)
T ss_dssp             -CEEEEESC-CHHHHHHHTTGGGSCE--EEEESCGGGHHH--HH----HTTCEEEESCTTSHHHHHHTCSTTEEEEEECC
T ss_pred             cCCEEEECC-cHHHHHHHHHHHhCCc--EEEEeCChhhhh--HH----hCCcEEEEeCCCCHHHHHhcChhhccEEEEcC
Confidence            458999996 9999999999999887  777776433221  22    247889999999887      56788888765

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=96.37  E-value=0.025  Score=42.96  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=27.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      ..|+++|+|++|-+|+.+++...+.+.+.|-++++
T Consensus        11 ~~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~   45 (228)
T 1vm6_A           11 HHMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV   45 (228)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             ccceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcC
Confidence            35899999999999999988776678874444444

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.36  E-value=0.0015  Score=53.01  Aligned_cols=69  Identities=19%  Similarity=0.220  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCcee-EeecccCc---cccCCcCEEEEccC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFE-LIRHDVTE---PLLIEVDQIYHLAC  106 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~dl~~---~~~~~~d~vi~~a~  106 (259)
                      .+.+|+|+||+|.+|...++.+...|.+ |+++.+..+  .+..+++    +.+ .+..+-.+   ....++|++|.+.|
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~-vi~~~~~~~--~~~~~~l----Ga~~~i~~~~~~~~~~~~~g~D~v~d~~g  224 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTT-VITTASKRN--HAFLKAL----GAEQCINYHEEDFLLAISTPVDAVIDLVG  224 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEECHHH--HHHHHHH----TCSEEEETTTSCHHHHCCSCEEEEEESSC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCE-EEEEeccch--HHHHHHc----CCCEEEeCCCcchhhhhccCCCEEEECCC
Confidence            4689999999999999999999999997 888775321  3333332    222 22211111   11468999999886

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.024  Score=52.85  Aligned_cols=104  Identities=10%  Similarity=0.088  Sum_probs=68.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~   87 (259)
                      +.+.+|+|.|+ |.+|..+++.|...|...+.+++...-...                      +.++++.+...++.+.
T Consensus        25 L~~s~VlIvG~-GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~~  103 (1015)
T 3cmm_A           25 MQTSNVLILGL-KGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLD  103 (1015)
T ss_dssp             HTTCEEEEECC-SHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEECC
T ss_pred             HhcCEEEEECC-ChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEec
Confidence            45789999996 789999999999999887888875421110                      1112222223455566


Q ss_pred             cccCccccCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEeccee
Q 025022           88 HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (259)
Q Consensus        88 ~dl~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~  150 (259)
                      .++....+.++|+||.+...                |...-..+.++|.+.++.+|..++.+.
T Consensus       104 ~~l~~~~l~~~DvVv~~~d~----------------~~~~r~~ln~~c~~~~iplI~~~~~G~  150 (1015)
T 3cmm_A          104 SLDDVTQLSQFQVVVATDTV----------------SLEDKVKINEFCHSSGIRFISSETRGL  150 (1015)
T ss_dssp             CCCCSTTGGGCSEEEECTTS----------------CHHHHHHHHHHHHHHTCEEEEEEEETT
T ss_pred             CCCCHHHHhcCCEEEEcCCC----------------CHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence            66654447789999975320                223334677889888888888775543

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.34  E-value=0.0084  Score=47.42  Aligned_cols=72  Identities=17%  Similarity=0.171  Sum_probs=47.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +..+++++|+|+ |.+|++++..|.+.|.+ |++..|+..+.. .+...   -++.... ++.+ ...++|+||++....
T Consensus       126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~~-V~v~~r~~~~~~-~l~~~---~g~~~~~-~~~~-~~~~aDiVi~atp~~  197 (275)
T 2hk9_A          126 EVKEKSILVLGA-GGASRAVIYALVKEGAK-VFLWNRTKEKAI-KLAQK---FPLEVVN-SPEE-VIDKVQVIVNTTSVG  197 (275)
T ss_dssp             TGGGSEEEEECC-SHHHHHHHHHHHHHTCE-EEEECSSHHHHH-HHTTT---SCEEECS-CGGG-TGGGCSEEEECSSTT
T ss_pred             CcCCCEEEEECc-hHHHHHHHHHHHHcCCE-EEEEECCHHHHH-HHHHH---cCCeeeh-hHHh-hhcCCCEEEEeCCCC
Confidence            345789999995 89999999999999995 999888532211 12111   1233221 2221 256899999987644

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.34  E-value=0.0044  Score=49.71  Aligned_cols=72  Identities=13%  Similarity=0.050  Sum_probs=48.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ...+++++|+|+ |.+|+.+++.|...|.+ |++.+|+..+. +.+.+    .+++.+..+-.++.+.++|+|+.+...
T Consensus       154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~-V~~~d~~~~~~-~~~~~----~g~~~~~~~~l~~~l~~aDvVi~~~p~  225 (300)
T 2rir_A          154 TIHGSQVAVLGL-GRTGMTIARTFAALGAN-VKVGARSSAHL-ARITE----MGLVPFHTDELKEHVKDIDICINTIPS  225 (300)
T ss_dssp             CSTTSEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSHHHH-HHHHH----TTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHHCCCE-EEEEECCHHHH-HHHHH----CCCeEEchhhHHHHhhCCCEEEECCCh
Confidence            356899999995 99999999999999997 99998854221 11111    123333222112226789999998753

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.25  E-value=0.0049  Score=50.52  Aligned_cols=68  Identities=12%  Similarity=0.020  Sum_probs=46.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQI  101 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~v  101 (259)
                      +++++|+||+|.+|...++.+...|.+ |+++.++..+. +.++++    +.+.+ .|..+.+          ..++|++
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~-Vi~~~~~~~~~-~~~~~~----Ga~~~-~~~~~~~~~~~v~~~~~~~g~D~v  237 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFR-PIVTVRRDEQI-ALLKDI----GAAHV-LNEKAPDFEATLREVMKAEQPRIF  237 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCE-EEEEESCGGGH-HHHHHH----TCSEE-EETTSTTHHHHHHHHHHHHCCCEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHHH-HHHHHc----CCCEE-EECCcHHHHHHHHHHhcCCCCcEE
Confidence            379999999999999999999999997 99998754332 223332    12111 1222222          1479999


Q ss_pred             EEccC
Q 025022          102 YHLAC  106 (259)
Q Consensus       102 i~~a~  106 (259)
                      |+++|
T Consensus       238 id~~g  242 (349)
T 3pi7_A          238 LDAVT  242 (349)
T ss_dssp             EESSC
T ss_pred             EECCC
Confidence            99987

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.24  E-value=0.039  Score=47.12  Aligned_cols=37  Identities=16%  Similarity=0.148  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhc-CC-CeEEEEcCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMEN-EK-NEVIVVDNYFT   68 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~-~~V~~~~r~~~   68 (259)
                      +..|+|.|.| +|++|..++..|.+. |+ + |++++++..
T Consensus        16 ~~~mkIaVIG-lG~mG~~lA~~la~~~G~~~-V~~~D~~~~   54 (478)
T 3g79_A           16 GPIKKIGVLG-MGYVGIPAAVLFADAPCFEK-VLGFQRNSK   54 (478)
T ss_dssp             CSCCEEEEEC-CSTTHHHHHHHHHHSTTCCE-EEEECCCCT
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHHhCCCCe-EEEEECChh
Confidence            3468999998 699999999999999 99 8 999999766

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.24  E-value=0.0057  Score=50.07  Aligned_cols=36  Identities=22%  Similarity=0.214  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+.+|+|+||+|.+|...++.+...|.+ |+++.+++
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~-Vi~~~~~~  185 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLR-VITTASRN  185 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEECCSH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCE-EEEEeCCH
Confidence            5789999999999999999999999997 99998753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.20  E-value=0.012  Score=50.28  Aligned_cols=90  Identities=26%  Similarity=0.410  Sum_probs=60.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      .++|+|.|| |.+|..+++.|. +++. |.++.++.... +.+.+.+  ++..++.+|-+|.+      ..++|++|-+.
T Consensus       235 ~~~v~I~Gg-G~ig~~lA~~L~-~~~~-v~iIE~d~~r~-~~la~~l--~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T  308 (461)
T 4g65_A          235 YRRIMIVGG-GNIGASLAKRLE-QTYS-VKLIERNLQRA-EKLSEEL--ENTIVFCGDAADQELLTEENIDQVDVFIALT  308 (461)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHT-TTSE-EEEEESCHHHH-HHHHHHC--TTSEEEESCTTCHHHHHHTTGGGCSEEEECC
T ss_pred             ccEEEEEcc-hHHHHHHHHHhh-hcCc-eEEEecCHHHH-HHHHHHC--CCceEEeccccchhhHhhcCchhhcEEEEcc
Confidence            478999995 999999999984 5666 88887643322 2233333  47889999999988      56799998654


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEE
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL  144 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~  144 (259)
                      +.         .    +.|+    .....|++.|+ ++|-
T Consensus       309 ~~---------D----e~Ni----~~~llAk~~gv~kvIa  331 (461)
T 4g65_A          309 NE---------D----ETNI----MSAMLAKRMGAKKVMV  331 (461)
T ss_dssp             SC---------H----HHHH----HHHHHHHHTTCSEEEE
T ss_pred             cC---------c----HHHH----HHHHHHHHcCCccccc
Confidence            31         1    2343    23445677888 6553

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.18  E-value=0.0099  Score=46.87  Aligned_cols=38  Identities=13%  Similarity=0.212  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      .+..+++++|+|+++.+|+.++..|+..|.+ |++..+.
T Consensus       156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAt-Vtv~h~~  193 (285)
T 3p2o_A          156 IDLEGKDAVIIGASNIVGRPMATMLLNAGAT-VSVCHIK  193 (285)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCC
Confidence            3467899999999999999999999999998 8888764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=96.17  E-value=0.0073  Score=48.98  Aligned_cols=71  Identities=20%  Similarity=0.073  Sum_probs=44.2

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCc-eeEeecc--c-CccccCCcCEEEEccCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR-FELIRHD--V-TEPLLIEVDQIYHLACP  107 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~d--l-~~~~~~~~d~vi~~a~~  107 (259)
                      +|+|+|++|.+|...++.+...|.+ |+++.+++.+ .+.++++ .... ++.-..|  . ......++|++|+++|.
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~-vi~~~~~~~~-~~~~~~l-Ga~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~  226 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYT-VEASTGKAAE-HDYLRVL-GAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG  226 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCTTC-HHHHHHT-TCSEEEECC---------CCSCCEEEEEECSTT
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCE-EEEEECCHHH-HHHHHHc-CCcEEEecCCcHHHHHHHhcCCcccEEEECCcH
Confidence            7999999999999999999999998 9888876433 2233332 1111 1111111  0 00012468999999873

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.15  E-value=0.0022  Score=53.22  Aligned_cols=76  Identities=14%  Similarity=0.053  Sum_probs=47.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccC--ccccCCcCEEEEccC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT--EPLLIEVDQIYHLAC  106 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~--~~~~~~~d~vi~~a~  106 (259)
                      ...+++|+|+|+ |.||..+++.+...|.+ |++.+++..... .+++.+. ..+.....+..  +..+.++|+||++++
T Consensus       165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~-V~~~d~~~~~l~-~~~~~~g-~~~~~~~~~~~~l~~~l~~aDvVi~~~~  240 (377)
T 2vhw_A          165 GVEPADVVVIGA-GTAGYNAARIANGMGAT-VTVLDINIDKLR-QLDAEFC-GRIHTRYSSAYELEGAVKRADLVIGAVL  240 (377)
T ss_dssp             TBCCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHHHHH-HHHHHTT-TSSEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEeCCHHHHH-HHHHhcC-CeeEeccCCHHHHHHHHcCCCEEEECCC
Confidence            356899999998 99999999999999996 999988543211 1222111 11111110111  111557999999886


Q ss_pred             CC
Q 025022          107 PA  108 (259)
Q Consensus       107 ~~  108 (259)
                      ..
T Consensus       241 ~p  242 (377)
T 2vhw_A          241 VP  242 (377)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.14  E-value=0.013  Score=44.24  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      ..+|+|.|.| .|.+|..++..|.+.|++ |++.+|+
T Consensus        17 ~~~~~I~iiG-~G~mG~~la~~l~~~g~~-V~~~~~~   51 (209)
T 2raf_A           17 FQGMEITIFG-KGNMGQAIGHNFEIAGHE-VTYYGSK   51 (209)
T ss_dssp             ---CEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECTT
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            4578999999 799999999999999998 9988875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.13  E-value=0.0057  Score=48.89  Aligned_cols=71  Identities=15%  Similarity=0.061  Sum_probs=47.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      ...+++|+|+| .|.+|+.+++.|...|.+ |++.+|+..+. +....    .+++.+..+-.++.+.++|+|+.+..
T Consensus       152 ~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~-V~~~dr~~~~~-~~~~~----~g~~~~~~~~l~~~l~~aDvVi~~~p  222 (293)
T 3d4o_A          152 TIHGANVAVLG-LGRVGMSVARKFAALGAK-VKVGARESDLL-ARIAE----MGMEPFHISKAAQELRDVDVCINTIP  222 (293)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESSHHHH-HHHHH----TTSEEEEGGGHHHHTTTCSEEEECCS
T ss_pred             CCCCCEEEEEe-eCHHHHHHHHHHHhCCCE-EEEEECCHHHH-HHHHH----CCCeecChhhHHHHhcCCCEEEECCC
Confidence            35689999999 599999999999999996 99998854321 11111    13333322111222678999999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.12  E-value=0.0048  Score=50.36  Aligned_cols=68  Identities=16%  Similarity=0.039  Sum_probs=45.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIY  102 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~vi  102 (259)
                      .+++|+|+|+ |.+|..+++.+...|.+ |+++.+++.+. +..+++    +.+.+ .|..+.+        ..++|++|
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~-Vi~~~~~~~~~-~~~~~l----Ga~~~-~d~~~~~~~~~~~~~~~~~d~vi  235 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLN-VVAVDIGDEKL-ELAKEL----GADLV-VNPLKEDAAKFMKEKVGGVHAAV  235 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCE-EEEECSCHHHH-HHHHHT----TCSEE-ECTTTSCHHHHHHHHHSSEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCE-EEEEeCCHHHH-HHHHHC----CCCEE-ecCCCccHHHHHHHHhCCCCEEE
Confidence            4689999999 77999999999999997 99998753322 122221    22211 2333222        15799999


Q ss_pred             EccC
Q 025022          103 HLAC  106 (259)
Q Consensus       103 ~~a~  106 (259)
                      +++|
T Consensus       236 d~~g  239 (339)
T 1rjw_A          236 VTAV  239 (339)
T ss_dssp             ESSC
T ss_pred             ECCC
Confidence            9987

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.11  E-value=0.0033  Score=51.98  Aligned_cols=70  Identities=14%  Similarity=0.032  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEcc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a  105 (259)
                      .+.+|+|+|+ |.+|...++.+...|.+ |+++++++.+.. ...+.+   +.+.+ .|..+.+     ..++|+||+++
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~-Vi~~~~~~~~~~-~~~~~l---Ga~~v-~~~~~~~~~~~~~~~~D~vid~~  259 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSK-VTVISTSPSKKE-EALKNF---GADSF-LVSRDQEQMQAAAGTLDGIIDTV  259 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCGGGHH-HHHHTS---CCSEE-EETTCHHHHHHTTTCEEEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeCCHHHHH-HHHHhc---CCceE-EeccCHHHHHHhhCCCCEEEECC
Confidence            5789999996 99999999999999997 988887543322 222111   12111 1222211     35799999998


Q ss_pred             CC
Q 025022          106 CP  107 (259)
Q Consensus       106 ~~  107 (259)
                      |.
T Consensus       260 g~  261 (366)
T 1yqd_A          260 SA  261 (366)
T ss_dssp             SS
T ss_pred             Cc
Confidence            74

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.10  E-value=0.0067  Score=49.27  Aligned_cols=68  Identities=22%  Similarity=0.251  Sum_probs=44.5

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeec-cc-Cc----cccCCcCEEEEccC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DV-TE----PLLIEVDQIYHLAC  106 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-dl-~~----~~~~~~d~vi~~a~  106 (259)
                      +|+|+|++|.+|...++.+...|.+ |+++.+++.+ .+..+++ ....  .+.. |. .+    ....++|++|+++|
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~-vi~~~~~~~~-~~~~~~l-Ga~~--v~~~~~~~~~~~~~~~~~~~d~vid~~g  226 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYD-VVASTGNREA-ADYLKQL-GASE--VISREDVYDGTLKALSKQQWQGAVDPVG  226 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCC-EEEEESSSST-HHHHHHH-TCSE--EEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCHHH-HHHHHHc-CCcE--EEECCCchHHHHHHhhcCCccEEEECCc
Confidence            8999999999999999999999998 9888886443 2233332 1111  1111 11 11    01246899999886

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.08  E-value=0.025  Score=47.89  Aligned_cols=33  Identities=33%  Similarity=0.430  Sum_probs=29.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      |+|.|.| +|++|..++..|.+.|++ |++++++.
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~~G~~-V~~~d~~~   33 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSARGHE-VIGVDVSS   33 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEECCH
Confidence            5899998 799999999999999998 99998854

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.06  E-value=0.0086  Score=46.72  Aligned_cols=69  Identities=10%  Similarity=0.201  Sum_probs=44.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      ..+ +++|+|+ |.+|++++..|.+.|...|++..|+..+    .+.+..  .+.....+-......++|+||++..
T Consensus       107 ~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~k----a~~la~--~~~~~~~~~~~~~~~~aDiVInatp  175 (253)
T 3u62_A          107 VKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIER----AKALDF--PVKIFSLDQLDEVVKKAKSLFNTTS  175 (253)
T ss_dssp             CCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHH----HHTCCS--SCEEEEGGGHHHHHHTCSEEEECSS
T ss_pred             CCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHH----HHHHHH--HcccCCHHHHHhhhcCCCEEEECCC
Confidence            356 9999996 9999999999999998449999885332    222211  1211222111112567999999764

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.05  E-value=0.0058  Score=50.55  Aligned_cols=71  Identities=11%  Similarity=0.059  Sum_probs=45.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCcee-Eeec---ccCccc----cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFE-LIRH---DVTEPL----LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~---dl~~~~----~~~~d~v  101 (259)
                      ..+.+|+|+||+|.+|...++.+...|.+ |+++.+  +...+..+++    +.+ .+..   |+.+.-    ..++|++
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~-Vi~~~~--~~~~~~~~~l----Ga~~vi~~~~~~~~~~v~~~t~g~~d~v  235 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYI-PIATCS--PHNFDLAKSR----GAEEVFDYRAPNLAQTIRTYTKNNLRYA  235 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEEC--GGGHHHHHHT----TCSEEEETTSTTHHHHHHHHTTTCCCEE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC--HHHHHHHHHc----CCcEEEECCCchHHHHHHHHccCCccEE
Confidence            45789999999999999999999999997 877753  2223333332    222 2211   111110    2459999


Q ss_pred             EEccCC
Q 025022          102 YHLACP  107 (259)
Q Consensus       102 i~~a~~  107 (259)
                      |.+.|.
T Consensus       236 ~d~~g~  241 (371)
T 3gqv_A          236 LDCITN  241 (371)
T ss_dssp             EESSCS
T ss_pred             EECCCc
Confidence            998873

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.04  E-value=0.029  Score=45.19  Aligned_cols=38  Identities=13%  Similarity=0.191  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      ...+|+|.|.| .|.||+.+++.|...|.+ |++.+|+..
T Consensus       136 ~l~g~tvGIiG-~G~IG~~vA~~l~~~G~~-V~~~dr~~~  173 (315)
T 3pp8_A          136 TREEFSVGIMG-AGVLGAKVAESLQAWGFP-LRCWSRSRK  173 (315)
T ss_dssp             CSTTCCEEEEC-CSHHHHHHHHHHHTTTCC-EEEEESSCC
T ss_pred             CcCCCEEEEEe-eCHHHHHHHHHHHHCCCE-EEEEcCCch
Confidence            36789999999 699999999999999998 999988654

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.98  E-value=0.016  Score=46.73  Aligned_cols=68  Identities=15%  Similarity=0.090  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      .+.+|+|+|+ |.+|...++.+...|.+ |+++. ++ ...+.++++    +.+.+.-| .+.-..++|++|.+.|.
T Consensus       142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~-Vi~~~-~~-~~~~~~~~l----Ga~~v~~d-~~~v~~g~Dvv~d~~g~  209 (315)
T 3goh_A          142 KQREVLIVGF-GAVNNLLTQMLNNAGYV-VDLVS-AS-LSQALAAKR----GVRHLYRE-PSQVTQKYFAIFDAVNS  209 (315)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCE-EEEEC-SS-CCHHHHHHH----TEEEEESS-GGGCCSCEEEEECC---
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCE-EEEEE-Ch-hhHHHHHHc----CCCEEEcC-HHHhCCCccEEEECCCc
Confidence            4689999999 99999999999999996 99888 43 333344443    33332223 11114679999998874

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.96  E-value=0.0098  Score=47.71  Aligned_cols=68  Identities=13%  Similarity=0.048  Sum_probs=43.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      +.|+|.|.| .|.+|..+++.|.+.|++ |++.+|+...... +.+.    +......|+.+ ...++|+||.+..
T Consensus         6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~-V~~~dr~~~~~~~-~~~~----g~~~~~~~~~e-~~~~aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVG-LGSMGMGAARSCLRAGLS-TWGADLNPQACAN-LLAE----GACGAAASARE-FAGVVDALVILVV   73 (303)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCHHHHHH-HHHT----TCSEEESSSTT-TTTTCSEEEECCS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCe-EEEEECCHHHHHH-HHHc----CCccccCCHHH-HHhcCCEEEEECC
Confidence            357899997 699999999999999998 9999885432221 1111    22221222222 2457888887653

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=95.92  E-value=0.036  Score=48.06  Aligned_cols=103  Identities=8%  Similarity=0.104  Sum_probs=66.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC----------------------cchhhhccCCCceeEeec
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------------------KDNLRKWIGHPRFELIRH   88 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----------------------~~~~~~~~~~~~~~~~~~   88 (259)
                      ...+|+|.|+ |.+|..+++.|...|...+.+++...-..                      .+.++++.+...+..+..
T Consensus        31 ~~~~VlvvG~-GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~  109 (531)
T 1tt5_A           31 ESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE  109 (531)
T ss_dssp             HHCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESS
T ss_pred             hcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCC
Confidence            4579999996 78999999999999988788887542110                      011222222234555555


Q ss_pred             ccCc-----cc-cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceee
Q 025022           89 DVTE-----PL-LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (259)
Q Consensus        89 dl~~-----~~-~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~  151 (259)
                      ++.+     .+ +.++|+||.+..                 |...-..+.++|.+.++.+|..++.+.+
T Consensus       110 ~~~~~~~~~~~~~~~~DvVi~~~d-----------------~~~~r~~ln~~c~~~~iplI~~~~~G~~  161 (531)
T 1tt5_A          110 SPENLLDNDPSFFCRFTVVVATQL-----------------PESTSLRLADVLWNSQIPLLICRTYGLV  161 (531)
T ss_dssp             CHHHHHHSCGGGGGGCSEEEEESC-----------------CHHHHHHHHHHHHHTTCCEEEEEEETTE
T ss_pred             CcchhhhhhHHHhcCCCEEEEeCC-----------------CHHHHHHHHHHHHHcCCCEEEEEecCCe
Confidence            5532     12 678999998742                 1223345677888888888887765443

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.91  E-value=0.017  Score=45.62  Aligned_cols=65  Identities=20%  Similarity=0.227  Sum_probs=43.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCcee-EeecccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFE-LIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |+|.|+| .|.+|..+++.|.+.|++ |++.+|+..... .+...    ++. ....|+.+.  .++|+||.+..
T Consensus         1 m~i~iiG-~G~~G~~~a~~l~~~g~~-V~~~~~~~~~~~-~~~~~----g~~~~~~~~~~~~--~~~D~vi~av~   66 (279)
T 2f1k_A            1 MKIGVVG-LGLIGASLAGDLRRRGHY-LIGVSRQQSTCE-KAVER----QLVDEAGQDLSLL--QTAKIIFLCTP   66 (279)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCHHHHH-HHHHT----TSCSEEESCGGGG--TTCSEEEECSC
T ss_pred             CEEEEEc-CcHHHHHHHHHHHHCCCE-EEEEECCHHHHH-HHHhC----CCCccccCCHHHh--CCCCEEEEECC
Confidence            5899999 699999999999999997 999887543221 12211    111 122333332  67899988763

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.91  E-value=0.068  Score=46.75  Aligned_cols=63  Identities=17%  Similarity=0.096  Sum_probs=51.4

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a~  106 (259)
                      ++++|.|+ |-+|+++++.|.+.|++ |++++.++....    ..    . ..+.+|.++++      ..++|.+|-+.+
T Consensus       349 ~~viIiG~-G~~G~~la~~L~~~g~~-v~vid~d~~~~~----~~----~-~~i~gD~t~~~~L~~agi~~ad~vi~~~~  417 (565)
T 4gx0_A          349 ELIFIIGH-GRIGCAAAAFLDRKPVP-FILIDRQESPVC----ND----H-VVVYGDATVGQTLRQAGIDRASGIIVTTN  417 (565)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCC-EEEEESSCCSSC----CS----S-CEEESCSSSSTHHHHHTTTSCSEEEECCS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCC-EEEEECChHHHh----hc----C-CEEEeCCCCHHHHHhcCccccCEEEEECC
Confidence            78999997 99999999999999999 999998654432    11    1 78899999988      678999987653

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.89  E-value=0.016  Score=45.73  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      +..+++++|.|.++.+|+.++..|+..|.+ |+++.+.
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAt-Vtv~hs~  194 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLGGCT-VTVTHRF  194 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHTTCE-EEEECTT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeCC
Confidence            467899999999999999999999999998 8887653

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=95.87  E-value=0.11  Score=36.40  Aligned_cols=36  Identities=17%  Similarity=0.299  Sum_probs=30.1

Q ss_pred             cCCCEEEEEcCc---hhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           30 QSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        30 ~~~~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      .+.++|.|.|+|   |.+|..+++.|++.|++ |+.+..+
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~-V~~vnp~   50 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFE-VLPVNPN   50 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTT
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCE-EEEeCCC
Confidence            346799999987   89999999999999997 8887764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=95.86  E-value=0.0086  Score=50.83  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      .+.+|+|+||+|.||...++.+...|.+ |+++.++
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~-vi~~~~~  254 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGI-PVAVVSS  254 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCE-EEEEeCC
Confidence            4689999999999999999999999998 8887764

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.85  E-value=0.017  Score=45.49  Aligned_cols=37  Identities=14%  Similarity=0.303  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      +..+++++|.|+++-+|+.++..|+..|.+ |++..+.
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt-Vtv~hs~  194 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKAT-VTTCHRF  194 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCe-EEEEeCC
Confidence            467899999999999999999999999998 8887653

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.84  E-value=0.071  Score=43.16  Aligned_cols=72  Identities=14%  Similarity=-0.039  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCchhhhH-HHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccCCCceeEeecccCcccc-CCcCEEEEccCC
Q 025022           31 SNMRILVTGGAGFIGS-HLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPLL-IEVDQIYHLACP  107 (259)
Q Consensus        31 ~~~~vlItGatG~iG~-~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~dl~~~~~-~~~d~vi~~a~~  107 (259)
                      .+|+|.+.|. |..|. .+++.|.++|+. |.+.+++.... .+.++.    .++.+..+.-.+... .++|.||...|.
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~~-V~~~D~~~~~~~~~~L~~----~gi~v~~g~~~~~l~~~~~d~vV~Spgi   76 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGFE-VSGCDAKMYPPMSTQLEA----LGIDVYEGFDAAQLDEFKADVYVIGNVA   76 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTCE-EEEEESSCCTTHHHHHHH----TTCEEEESCCGGGGGSCCCSEEEECTTC
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCCE-EEEEcCCCCcHHHHHHHh----CCCEEECCCCHHHcCCCCCCEEEECCCc
Confidence            4689999995 77887 499999999999 99999864322 222332    366666553222112 478999998775


Q ss_pred             C
Q 025022          108 A  108 (259)
Q Consensus       108 ~  108 (259)
                      .
T Consensus        77 ~   77 (326)
T 3eag_A           77 K   77 (326)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.84  E-value=0.012  Score=48.42  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=31.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      ++.+++|+|.|. |.+|+++++.|.+.|.+ |++.+++
T Consensus       170 ~L~GktV~V~G~-G~VG~~~A~~L~~~Gak-Vvv~D~~  205 (364)
T 1leh_A          170 SLEGLAVSVQGL-GNVAKALCKKLNTEGAK-LVVTDVN  205 (364)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSC
T ss_pred             CCCcCEEEEECc-hHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            467899999995 99999999999999998 8877764

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=95.84  E-value=0.055  Score=43.78  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      ...+++|.|.| .|.||+.+++.|...|.+ |++.+|+.
T Consensus       137 ~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~-V~~~dr~~  173 (324)
T 3hg7_A          137 GLKGRTLLILG-TGSIGQHIAHTGKHFGMK-VLGVSRSG  173 (324)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             ccccceEEEEE-ECHHHHHHHHHHHhCCCE-EEEEcCCh
Confidence            46789999999 699999999999999998 99998865

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.83  E-value=0.017  Score=45.27  Aligned_cols=36  Identities=14%  Similarity=0.178  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      ..+++++|.|+++.+|+.++..|+..|.+ |++..+.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAt-Vtv~~~~  183 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYT-VSVCHSK  183 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTT
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCe-EEEEeCC
Confidence            67899999999999999999999999998 8888764

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=95.83  E-value=0.12  Score=35.35  Aligned_cols=85  Identities=11%  Similarity=0.043  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCc---hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           31 SNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        31 ~~~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      +.++|.|.|+|   +-.|..+.+.|++.|++ |+.+..+.    +.+.      +.. ..-++.+.. . +|.++-+-. 
T Consensus         3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~-V~pVnP~~----~~i~------G~~-~y~sl~dlp-~-vDlavi~~p-   67 (122)
T 3ff4_A            3 AMKKTLILGATPETNRYAYLAAERLKSHGHE-FIPVGRKK----GEVL------GKT-IINERPVIE-G-VDTVTLYIN-   67 (122)
T ss_dssp             CCCCEEEETCCSCTTSHHHHHHHHHHHHTCC-EEEESSSC----SEET------TEE-CBCSCCCCT-T-CCEEEECSC-
T ss_pred             CCCEEEEEccCCCCCCHHHHHHHHHHHCCCe-EEEECCCC----CcCC------Cee-ccCChHHCC-C-CCEEEEEeC-
Confidence            35789999998   56899999999999997 88876421    1111      111 122333332 3 788776542 


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEec
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss  147 (259)
                                       -..+..+++.|.+.|++.|.+++
T Consensus        68 -----------------~~~v~~~v~e~~~~g~k~v~~~~   90 (122)
T 3ff4_A           68 -----------------PQNQLSEYNYILSLKPKRVIFNP   90 (122)
T ss_dssp             -----------------HHHHGGGHHHHHHHCCSEEEECT
T ss_pred             -----------------HHHHHHHHHHHHhcCCCEEEECC
Confidence                             12223577788888884344543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.81  E-value=0.032  Score=47.39  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=30.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      |+|.|.| +|++|..++..|.+.|++ |++++++..
T Consensus         3 mkI~VIG-~G~vG~~lA~~La~~G~~-V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVG-IGYVGLVSATCFAELGAN-VRCIDTDRN   36 (450)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCHH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhcCCE-EEEEECCHH
Confidence            7999998 599999999999999998 999998643

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.80  E-value=0.009  Score=49.16  Aligned_cols=69  Identities=17%  Similarity=0.053  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCcc-c-----cCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-L-----LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~-~-----~~~~d~vi~~  104 (259)
                      .+.+|+|+|+ |.+|...++.+...|.+ |+++.+++.+. +..+++ .   .+.+ .|..+. +     ..++|++|.+
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~-Vi~~~~~~~~~-~~~~~l-G---a~~v-~~~~~~~~~~~~~~~~~D~vid~  250 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAE-TYVISRSSRKR-EDAMKM-G---ADHY-IATLEEGDWGEKYFDTFDLIVVC  250 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCE-EEEEESSSTTH-HHHHHH-T---CSEE-EEGGGTSCHHHHSCSCEEEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEcCCHHHH-HHHHHc-C---CCEE-EcCcCchHHHHHhhcCCCEEEEC
Confidence            4679999999 99999999999889997 99998765432 223332 1   2111 122221 1     2479999999


Q ss_pred             cCC
Q 025022          105 ACP  107 (259)
Q Consensus       105 a~~  107 (259)
                      +|.
T Consensus       251 ~g~  253 (360)
T 1piw_A          251 ASS  253 (360)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.79  E-value=0.022  Score=46.55  Aligned_cols=70  Identities=17%  Similarity=0.072  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      .+.+|+|+|+ |.+|...++.+...|.+ |+++++++.+. +..+++    +.+.+..|..+ ...++|++|.++|..
T Consensus       176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~-Vi~~~~~~~~~-~~~~~l----Ga~~v~~~~~~-~~~~~D~vid~~g~~  245 (348)
T 3two_A          176 KGTKVGVAGF-GGLGSMAVKYAVAMGAE-VSVFARNEHKK-QDALSM----GVKHFYTDPKQ-CKEELDFIISTIPTH  245 (348)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTCE-EEEECSSSTTH-HHHHHT----TCSEEESSGGG-CCSCEEEEEECCCSC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCe-EEEEeCCHHHH-HHHHhc----CCCeecCCHHH-HhcCCCEEEECCCcH
Confidence            4689999997 99999999999999997 99988765433 233332    22222222111 123899999998743

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.78  E-value=0.036  Score=46.78  Aligned_cols=35  Identities=17%  Similarity=0.121  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      ++.+|.|.| .||+|..++..|.+.|++ |++++.+.
T Consensus        20 ~m~~IaViG-lGYVGLp~A~~~A~~G~~-V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLG-LGYVGVVHAVGFALLGHR-VVGYDVNP   54 (444)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHHTCE-EEEECSCH
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhCCCc-EEEEECCH
Confidence            457899997 799999999999999999 99999753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.78  E-value=0.014  Score=47.72  Aligned_cols=35  Identities=26%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~   67 (259)
                      .+.+|+|+|+ |.+|...++.+...|. + |+++++++
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~-Vi~~~~~~  202 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGAYP-VIVSEPSD  202 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCS-EEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCE-EEEECCCH
Confidence            5789999999 9999999999999999 6 99988753

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.74  E-value=0.016  Score=46.08  Aligned_cols=60  Identities=17%  Similarity=0.199  Sum_probs=44.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +..+++++|+|+++-+|+.++..|+..|.+ |+++.|+..    .++              + .....+.|+||.+.|..
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt-Vtv~~~~T~----~l~--------------l-~~~~~~ADIVI~Avg~p  221 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKENAT-VTIVHSGTS----TED--------------M-IDYLRTADIVIAAMGQP  221 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTSC----HHH--------------H-HHHHHTCSEEEECSCCT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeCCCC----Cch--------------h-hhhhccCCEEEECCCCC
Confidence            467899999999999999999999999998 888876322    111              0 01134678998887753

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.72  E-value=0.013  Score=49.85  Aligned_cols=36  Identities=19%  Similarity=0.125  Sum_probs=31.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      +.+++++|+|+. .||+.+++.|...|.+ |++.++++
T Consensus       263 L~GKtVvVtGaG-gIG~aiA~~Laa~GA~-Viv~D~~~  298 (488)
T 3ond_A          263 IAGKVAVVAGYG-DVGKGCAAALKQAGAR-VIVTEIDP  298 (488)
T ss_dssp             CTTCEEEEECCS-HHHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             ccCCEEEEECCC-HHHHHHHHHHHHCCCE-EEEEcCCH
Confidence            568999999975 9999999999999997 88888753

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.69  E-value=0.022  Score=45.23  Aligned_cols=70  Identities=13%  Similarity=0.086  Sum_probs=44.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcCCCCCCcchhhhccCCCcee-EeecccCccccCCcCEEEEcc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFE-LIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      .|++|+|.|.| .|.+|..+++.|.+.|  ++ |++.+|+..... .+...    ++. ....|+.+ ...++|+||.+.
T Consensus         3 ~M~~~~I~iIG-~G~mG~~~a~~l~~~g~~~~-V~~~d~~~~~~~-~~~~~----g~~~~~~~~~~~-~~~~aDvVilav   74 (290)
T 3b1f_A            3 AMEEKTIYIAG-LGLIGASLALGIKRDHPHYK-IVGYNRSDRSRD-IALER----GIVDEATADFKV-FAALADVIILAV   74 (290)
T ss_dssp             GGCCCEEEEEC-CSHHHHHHHHHHHHHCTTSE-EEEECSSHHHHH-HHHHT----TSCSEEESCTTT-TGGGCSEEEECS
T ss_pred             ccccceEEEEe-eCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHH-HHHHc----CCcccccCCHHH-hhcCCCEEEEcC
Confidence            36678999999 7999999999999884  55 888887532211 12111    111 11223221 245789998876


Q ss_pred             C
Q 025022          106 C  106 (259)
Q Consensus       106 ~  106 (259)
                      .
T Consensus        75 p   75 (290)
T 3b1f_A           75 P   75 (290)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=95.67  E-value=0.062  Score=42.75  Aligned_cols=39  Identities=15%  Similarity=0.076  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (259)
                      ...+++|.|.| .|.||+.+++.|...|.+ |++.+|+...
T Consensus       119 ~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~-V~~~dr~~~~  157 (290)
T 3gvx_A          119 LLYGKALGILG-YGGIGRRVAHLAKAFGMR-VIAYTRSSVD  157 (290)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHHTCE-EEEECSSCCC
T ss_pred             eeecchheeec-cCchhHHHHHHHHhhCcE-EEEEeccccc
Confidence            36789999999 699999999999999998 9999986543

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.67  E-value=0.035  Score=45.04  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=31.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      ..+.+|+|.|+ |.+|.++++.|...|...+.++++.
T Consensus        32 L~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           32 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCC
Confidence            45789999995 8899999999999998878888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	2e-91
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	8e-66
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	1e-58
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	8e-54
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	3e-47
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	6e-46
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	1e-45
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	3e-42
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-41
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	5e-38
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	7e-37
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	2e-35
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	6e-35
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	2e-30
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	3e-27
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	2e-23
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	2e-21
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	1e-17
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	3e-13
d1eq2a_	307	c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer	5e-13
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	2e-12
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	5e-12
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	1e-11
d1vl0a_	281	c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD	2e-11
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	1e-10
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	1e-10
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	2e-10
d1n2sa_	298	c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct	2e-10
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	1e-06
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	3e-05
d1luaa1	191	c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter	2e-04
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	0.002

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  270 bits (691), Expect = 2e-91
 Identities = 159/218 (72%), Positives = 185/218 (84%), Gaps = 1/218 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 3   RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 61

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 62  LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 121

Query: 154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNI 213
           P VHPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+E+R+ARIFNT+GPRM++
Sbjct: 122 PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM 181

Query: 214 DDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           +DGRVVSNFI QA++GEPLTV   G+QTR+F YVSD+V
Sbjct: 182 NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLV 219

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score =  206 bits (526), Expect = 8e-66
 Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 25/242 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
           M+IL+TGGAGFIGS +V  +++N ++ V+ +D   + G+ ++L       R+     D+ 
Sbjct: 1   MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60

Query: 92  EPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---- 140
           +   I         D + HLA  +        P   I+TN++GT  +L +A++  +    
Sbjct: 61  DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120

Query: 141 ------RILLTSTSEVYGDPLVHPQDES-----YWGNVNPIGVRSCYDEGKRVAETLMFD 189
                 R    ST EVYGD     + E+      +         S Y   K  ++ L+  
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRA 180

Query: 190 YHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD 249
           + R +G+   +    N YGP    +  +++   I  A+ G+PL +   G Q R + YV D
Sbjct: 181 WRRTYGLPTIVTNCSNNYGPYHFPE--KLIPLVILNALEGKPLPIYGKGDQIRDWLYVED 238

Query: 250 MV 251
             
Sbjct: 239 HA 240

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score =  187 bits (475), Expect = 1e-58
 Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 19/231 (8%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN-----EKNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
           MR+LVTGGAGFIGSH V +L+         +EVIV+D+  + G++ NL      PR   +
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60

Query: 87  RHDVTEPLLIEV-----DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
             D+ +  L+       D I H A  +             +TNV GT  +L  A   G  
Sbjct: 61  HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120

Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI 200
           R++  ST++VYG        ES     +P+   S Y   K  ++ +   YHR +G+++RI
Sbjct: 121 RVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASKAGSDLVARAYHRTYGLDVRI 175

Query: 201 ARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            R  N YGP  + +  +++  F+   + G  L +   G   R + +  D  
Sbjct: 176 TRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHC 224

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score =  175 bits (445), Expect = 8e-54
 Identities = 56/244 (22%), Positives = 94/244 (38%), Gaps = 25/244 (10%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRKW--IGHPRFELIR 87
             L+TG  G  GS+L + L+E    EV  +      + T   D++ +     +P+F L  
Sbjct: 3   VALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61

Query: 88  HDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
            D+++   +         D++Y+L   +       +P  T   + +GTL +L   + +G 
Sbjct: 62  GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGL 121

Query: 140 ---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 196
               R    STSE+YG     PQ E+      P   RS Y   K  A  +  +Y   +G+
Sbjct: 122 EKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPYAVAKLYAYWITVNYRESYGM 176

Query: 197 EIRIARIFNTYGPRMNID-DGRVVSNFIAQAIRGEP-LTVQAPGTQTRSFCYVSDMVCKS 254
                 +FN   PR       R ++  IA   +G             R + +  D V   
Sbjct: 177 YACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQ 236

Query: 255 CFLA 258
             + 
Sbjct: 237 WMML 240

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score =  157 bits (397), Expect = 3e-47
 Identities = 48/235 (20%), Positives = 80/235 (34%), Gaps = 22/235 (9%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +  R+ + G  G +GS +  +L +   +  +V+       +D L         +    + 
Sbjct: 1   AKQRVFIAGHRGMVGSAIRRQLEQ-RGDVELVLRT-----RDELNLLDSRAVHDFFASE- 53

Query: 91  TEPLLIEVDQIYHLACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTS 148
                  +DQ+Y  A      +     P   I  N++   N++  A +    ++L   +S
Sbjct: 54  ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 107

Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
            +Y      P  ES             Y   K     L   Y+RQ+G + R     N YG
Sbjct: 108 CIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYG 167

Query: 209 PRMNIDDGR-------VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCF 256
           P  N            +     A A +   + V   GT  R F +V DM   S  
Sbjct: 168 PHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIH 222

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score =  154 bits (390), Expect = 6e-46
 Identities = 60/233 (25%), Positives = 94/233 (40%), Gaps = 15/233 (6%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
             I+VTGGAGFIGS+ V  +  N  +  V V+D           + I   R EL+  D+ 
Sbjct: 3   KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIA 62

Query: 92  EPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
           +  L++      D I H A  +       +P   I TN IGT  +L  A++   R    S
Sbjct: 63  DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 122

Query: 147 TSEVYGD-------PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIR 199
           T EVYGD       P         +         S Y   K  ++ ++  + R  G++  
Sbjct: 123 TDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKAT 182

Query: 200 IARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC 252
           I+   N YGP  +I+  + +   I   + G    +   G   R + + +D   
Sbjct: 183 ISNCSNNYGPYQHIE--KFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHST 233

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  153 bits (388), Expect = 1e-45
 Identities = 64/247 (25%), Positives = 106/247 (42%), Gaps = 20/247 (8%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW------IG 79
            +        L+TG AGFIGS+L++ L++    +V+ +DN+ TG + NL +         
Sbjct: 10  KELPAQPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLDNFATGHQRNLDEVRSLVSEKQ 68

Query: 80  HPRFELIRHDVTEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
              F+ I+ D+            VD + H A   S      +P+ +  TN+ G LNML  
Sbjct: 69  WSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIA 128

Query: 135 AKRVGARILL-TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ 193
           A+    +     ++S  YGD    P+ E   G        S Y   K V E     + R 
Sbjct: 129 ARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGK-----PLSPYAVTKYVNELYADVFSRC 183

Query: 194 HGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
           +G      R FN +G R + +     V+  + +  I+G+ + +   G  +R FCY+ + V
Sbjct: 184 YGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTV 243

Query: 252 CKSCFLA 258
             +   A
Sbjct: 244 QANLLAA 250

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (365), Expect = 3e-42
 Identities = 49/236 (20%), Positives = 85/236 (36%), Gaps = 26/236 (11%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRKWIG---HPRFELIR 87
            L+TG  G  GS+L + L+E    EV  +      + TG  ++L K          +L  
Sbjct: 4   ALITGITGQDGSYLAEFLLEK-GYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHY 62

Query: 88  HDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
            D+T+   +       +  +IY+L   +           T   + +GTL +L   K  G 
Sbjct: 63  GDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGL 122

Query: 140 ---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGI 196
               +    STSE+YG     PQ E+      P   RS Y   K  A  ++ ++   + +
Sbjct: 123 INSVKFYQASTSELYGKVQEIPQKET-----TPFYPRSPYGAAKLYAYWIVVNFREAYNL 177

Query: 197 EIRIARIFNTYGPRMNIDDG--RVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDM 250
                 +FN   PR   +    ++  +     +              R + +  D 
Sbjct: 178 FAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDY 233

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score =  143 bits (360), Expect = 1e-41
 Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 31/250 (12%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDV 90
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L   + +G      +  D+
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDI 59

Query: 91  TEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RI 142
               L+        +D + H A   +       P++    NV GTL ++   +       
Sbjct: 60  RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119

Query: 143 LLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-GIEIRIA 201
           + +S++ VYGD    P  ES+         +S Y + K + E ++ D  +      I + 
Sbjct: 120 IFSSSATVYGDQPKIPYVESFPTGTP----QSPYGKSKLMVEQILTDLQKAQPDWSIALL 175

Query: 202 RIFNTYGPRMNIDDG-------RVVSNFIAQAI--RGEPLTV------QAPGTQTRSFCY 246
           R FN  G   + D G         +  +IAQ    R + L +         GT  R + +
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235

Query: 247 VSDMVCKSCF 256
           V D+      
Sbjct: 236 VMDLADGHVV 245

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  133 bits (335), Expect = 5e-38
 Identities = 48/238 (20%), Positives = 87/238 (36%), Gaps = 18/238 (7%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTE 92
             LVTG  G  G++L   L+E     V  +     + ++  LR+       +    D+ +
Sbjct: 2   SALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD 60

Query: 93  PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARIL 143
              +       +  ++Y+LA  +        PV T   + +G  ++L   ++     R  
Sbjct: 61  ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFY 120

Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARI 203
             STSE++G      QDE+      P   RS Y   K     +  +Y    G+      +
Sbjct: 121 QASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGIL 175

Query: 204 FNTYGPRMNID-DGRVVSNFIAQAIRG-EPLTVQAPGTQTRSFCYVSDMVCKSCFLAY 259
           FN   P   I+   R V++ +A+   G +           R + +  D V     +  
Sbjct: 176 FNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQ 233

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  131 bits (329), Expect = 7e-37
 Identities = 54/243 (22%), Positives = 98/243 (40%), Gaps = 23/243 (9%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDVTE 92
           +LVTGGAG+IGSH V +L+EN   + +V DN    + D++   + +          D+ +
Sbjct: 4   VLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 62

Query: 93  PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL- 144
              +E       +D + H A   +       P++    N++GT+ +L L ++      + 
Sbjct: 63  RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVF 122

Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR--QHGIEIRIAR 202
           +S++ VYGD    P          P+G  + Y   K   E ++ D +   +   +  I R
Sbjct: 123 SSSATVYGDATRFPNMIPIPEE-CPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILR 181

Query: 203 IFNTYGPRMNIDDG--------RVVSNFIAQAI-RGEPLTVQAPGTQTRSFCYVSDMVCK 253
            FN  G   +   G         ++      A+ R E L +      +R    + D +  
Sbjct: 182 YFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHV 241

Query: 254 SCF 256
              
Sbjct: 242 VDL 244

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  127 bits (320), Expect = 2e-35
 Identities = 58/251 (23%), Positives = 96/251 (38%), Gaps = 15/251 (5%)

Query: 19  TPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW 77
           T   L   +++ S N++I +TG  GFI SH+  +L   E + VI  D       +++ + 
Sbjct: 1   TYKELEREQYWPSENLKISITGAGGFIASHIARRLKH-EGHYVIASDWK---KNEHMTED 56

Query: 78  IGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTI----KTNVIGTLNMLG 133
           +    F L+   V E  L   + + H+   A+ +                N + + NM+ 
Sbjct: 57  MFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIE 116

Query: 134 LAKRVG-ARILLTSTSEVYG--DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY 190
            A+  G  R    S++ +Y     L          +  P   +  +   K   E L   Y
Sbjct: 117 AARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHY 176

Query: 191 HRQHGIEIRIARIFNTYGPRMNIDDGR---VVSNFIAQAIRGEPLTVQAPGTQTRSFCYV 247
           ++  GIE RI R  N YGP      GR     +         +   +   G QTRSF ++
Sbjct: 177 NKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFI 236

Query: 248 SDMVCKSCFLA 258
            + V     L 
Sbjct: 237 DECVEGVLRLT 247

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score =  126 bits (315), Expect = 6e-35
 Identities = 61/246 (24%), Positives = 96/246 (39%), Gaps = 28/246 (11%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTE 92
           ++L+TGG GF+GS+L    +     ++IV DN    G+ DNL        FE +  D+  
Sbjct: 2   KLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60

Query: 93  PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA--KRVGARIL 143
              +         D  +HLA   +      NP    + NV GTLN+L           I+
Sbjct: 61  KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 120

Query: 144 LTSTSEVYGDPLVHPQDESYWGNVN-----------PIGVRSCYDEGKRVAETLMFDYHR 192
            +ST++VYGD   +  +E+                  +   S Y   K  A+  M DY R
Sbjct: 121 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 180

Query: 193 QHGIEIRIARIFNTYGPRMNIDDGRVVSNFI------AQAIRGEPLTVQAPGTQTRSFCY 246
             G+   + R  + YG R      +    +        +    +P T+   G Q R   +
Sbjct: 181 IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLH 240

Query: 247 VSDMVC 252
             DM+ 
Sbjct: 241 AEDMIS 246

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  113 bits (283), Expect = 2e-30
 Identities = 42/247 (17%), Positives = 78/247 (31%), Gaps = 27/247 (10%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLR---KWIGHPRFELI 86
             L+TG  G  GS+L + L+  +  EV  +      + T   +++      +     +L 
Sbjct: 3   IALITGITGQDGSYLTEFLLG-KGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61

Query: 87  RHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
             D+T+   +         D++Y+LA  +        P  T      G L +L   +   
Sbjct: 62  YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT 121

Query: 140 AR-----ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH 194
                      + S         PQ E+      P   RS Y   K  A     +Y   +
Sbjct: 122 IDSGRTVKYYQAGSSEMFGSTPPPQSET-----TPFHPRSPYAASKCAAHWYTVNYREAY 176

Query: 195 GIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC 252
           G+      +FN   PR   +    ++        +  +          +R + +  D V 
Sbjct: 177 GLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVE 236

Query: 253 KSCFLAY 259
               +  
Sbjct: 237 AMWLMLQ 243

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 3e-27
 Identities = 54/253 (21%), Positives = 92/253 (36%), Gaps = 35/253 (13%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--------KWIGHPRFEL 85
           ++LVTGGAG+IGSH V +L+E      +V+DN+    +            + +     E 
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62

Query: 86  IRHDVTEPLLIEVDQ-------IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              D+ +   ++          + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122

Query: 139 GARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDY-HRQHGIE 197
           G + L+ S+S        +PQ           G  + Y + K   E ++ D         
Sbjct: 123 GVKNLVFSSSATVYG---NPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN 179

Query: 198 IRIARIFNTYGPRMNIDDGR--------VVSNFIAQAI-RGEPLTV------QAPGTQTR 242
             + R FN  G   +   G         ++      AI R E L V         GT  R
Sbjct: 180 AVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 239

Query: 243 SFCYVSDMVCKSC 255
            + +V D+     
Sbjct: 240 DYIHVVDLAKGHI 252

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 95.6 bits (236), Expect = 2e-23
 Identities = 53/279 (18%), Positives = 95/279 (34%), Gaps = 58/279 (20%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------------KD 72
           S+MR+LV GGAG+IGSH V  L+ +  + V++VD+                        D
Sbjct: 1   SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60

Query: 73  NLRKWIGHPRFELIRHDVTEPLLIE--------VDQIYHLACPASPIFYKYNPVKTIKTN 124
             +         L   DV     +         +D + H+    +      +P+K    N
Sbjct: 61  GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNN 120

Query: 125 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGV---RSCYDEGKR 181
           V+G L +L          ++ S+S             +    ++        S Y E K 
Sbjct: 121 VVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKL 180

Query: 182 VAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDG-------RVVSNFIAQAIR------ 228
           +AE ++ D    +GI+    R FN  G   + D G        ++   + + +       
Sbjct: 181 IAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240

Query: 229 ----------GEPLTV------QAPGTQTRSFCYVSDMV 251
                      + + +         GT  R + +V D+ 
Sbjct: 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLA 279

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 89.6 bits (220), Expect = 2e-21
 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 18/234 (7%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           MR+L+ G  GFIG+HL ++L+  +  EV  +D       D + +++ HP F  +  D++ 
Sbjct: 1   MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  S
Sbjct: 57  HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGV--RSCYDEGKRVAETLMFDYHRQHGIEIRIARIF 204
           TSEVYG       DE +   +       R  Y   K++ + +++ Y  + G++  + R F
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPF 176

Query: 205 NTYGPRMNID------DGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVC 252
           N  GPR++          R ++  I   + G P+ +   G Q R F  + D + 
Sbjct: 177 NWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIE 230

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 79.1 bits (193), Expect = 1e-17
 Identities = 38/245 (15%), Positives = 71/245 (28%), Gaps = 17/245 (6%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
           + F+Q   R+ VTG  GF G  L   L       V                       + 
Sbjct: 3   NSFWQ-GKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQS 60

Query: 86  IRHDVTEPLLIEVDQ-------IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL---- 134
              D+ +   +           ++H+A           PV+T  TNV+GT+ +L      
Sbjct: 61  EIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHV 120

Query: 135 AKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV---AETLMFDYH 191
                   + +       + +   ++    G  +P        E               +
Sbjct: 121 GGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANY 180

Query: 192 RQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            QHG  +   R  N  G      D R+V + +    + +P+ ++ P         +  + 
Sbjct: 181 GQHGTAVATVRAGNVIGGGDWALD-RIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLS 239

Query: 252 CKSCF 256
                
Sbjct: 240 GYLLL 244

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 65.9 bits (159), Expect = 3e-13
 Identities = 22/225 (9%), Positives = 56/225 (24%), Gaps = 28/225 (12%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---KDNLRKWIGHPRFELI 86
               R+L+ GG G+IG  +V+  +    +   V+      S   K  +  +      +LI
Sbjct: 1   DKKSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 59

Query: 87  RHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
              + +   +           ++      +     +  +     +  + +    +  L S
Sbjct: 60  EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKL-----VEAIKEAGNIKRFLPS 114

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
              +  D + H                        + +  +        I          
Sbjct: 115 EFGMDPDIMEHALQPGSI---------------TFIDKRKVRRAIEAASIPYTYVSSNMF 159

Query: 207 YGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            G       G +           + + +   G     +    D+ 
Sbjct: 160 AGYF----AGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVG 200

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

 Score = 65.4 bits (157), Expect = 5e-13
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           I+VTGGAGFIGS++V  L +    +++VVDN   G+K      + +    + + D    +
Sbjct: 2   IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL-NIADYMDKEDFLIQI 60

Query: 95  LIEVDQIYHLACP 107
           +   +     A  
Sbjct: 61  MAGEEFGDVEAIF 73

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 63.7 bits (153), Expect = 2e-12
 Identities = 35/251 (13%), Positives = 77/251 (30%), Gaps = 27/251 (10%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP----RFELIRHD 89
            +LVTG  GF+ SH+V++L+E+         +       NL+K             +  D
Sbjct: 13  LVLVTGANGFVASHVVEQLLEHGYKVRGTARS--ASKLANLQKRWDAKYPGRFETAVVED 70

Query: 90  VTEPLLIE--VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
           + +    +  +     +A  AS + +     + +   + GTLN L  A    +      T
Sbjct: 71  MLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLT 130

Query: 148 SEVYGDPLVHPQDESYWGNV-----------------NPIGVRSCYDEGKRVAETLMFDY 190
           S      +  P  E  + +                  +P      Y   K  AE   + +
Sbjct: 131 SSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKF 190

Query: 191 HRQHGIEIRIARIFNT--YGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS 248
             ++     +  +      G   + +     ++    ++    ++        + +    
Sbjct: 191 MDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSAV 250

Query: 249 DMVCKSCFLAY 259
           D+         
Sbjct: 251 DIGLLHLGCLV 261

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 62.7 bits (150), Expect = 5e-12
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 19/83 (22%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----------------- 75
           R++V GG G+ G      L +    EV +VDN      D+                   
Sbjct: 2  SRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60

Query: 76 -KWIGHPRFELIRHDVTEPLLIE 97
           K +     EL   D+ +   + 
Sbjct: 61 WKALTGKSIELYVGDICDFEFLA 83

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 61.3 bits (147), Expect = 1e-11
 Identities = 22/225 (9%), Positives = 55/225 (24%), Gaps = 35/225 (15%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----KWIGHPRFELI 86
           S  RIL+ G  G+IG H+    ++   +   ++    T S ++ +    +        ++
Sbjct: 2   SRSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGANIV 60

Query: 87  RHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
              + +   +           ++    +      I                  A   + +
Sbjct: 61  HGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIK----------------AIKEVGT 104

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNT 206
               +     +  D  +                       +       GI          
Sbjct: 105 VKRFFPSEFGNDVDNVHAVEPAKSVFEVKAK---------VRRAIEAEGIPYTYVSSNCF 155

Query: 207 YGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV 251
            G  +     R ++     A   + + +   G     F    D+ 
Sbjct: 156 AGYFL-----RSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIG 195

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 60.2 bits (144), Expect = 2e-11
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 27/182 (14%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRKWIGHPRFELIRHDV 90
           M+IL+TG  G +G  +  +L + +  EVI  D       +   + K+    +        
Sbjct: 2   MKILITGANGQLGREIQKQL-KGKNVEVIPTDVQDLDITNVLAVNKFFNEKKP------- 53

Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150
                   + + + A   +    +       K N IG  N+   A  VGA I+  ST  V
Sbjct: 54  --------NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYV 105

Query: 151 YGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR 210
           +      P  E    N      ++  +            + +    +  I R    YG  
Sbjct: 106 FDGEAKEPITEFDEVNPQSAYGKTKLEGEN---------FVKALNPKYYIVRTAWLYGDG 156

Query: 211 MN 212
            N
Sbjct: 157 NN 158

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 1e-10
 Identities = 17/135 (12%), Positives = 43/135 (31%), Gaps = 9/135 (6%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +  +I + G  G  G   + + ++    EV V+    +       +       ++++   
Sbjct: 2   AVKKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD 60

Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 149
            +  +   D +  L           N +        G  N++   K  G   ++  +++ 
Sbjct: 61  VDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF 113

Query: 150 VYGDPLVHPQDESYW 164
           +  DP   P      
Sbjct: 114 LLWDPTKVPPRLQAV 128

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.5 bits (137), Expect = 1e-10
 Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 4/185 (2%)

Query: 31  SNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRH 88
           +N+  +LVTG +G  G  +  KL E   ++ +      +    + +         ++   
Sbjct: 1   ANLPTVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSAQGKEKIGGEADVFIGDITDA 59

Query: 89  DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148
           D   P    +D +  L      +   ++P K  +   I              +      +
Sbjct: 60  DSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAA 119

Query: 149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYG 208
           +V G         S  G      +    +    V +     Y    G    I R      
Sbjct: 120 KVAGVK-HIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLD 178

Query: 209 PRMNI 213
               +
Sbjct: 179 KEGGV 183

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 23/209 (11%), Positives = 45/209 (21%), Gaps = 10/209 (4%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           Q    I V G  G  G+ L+        +    V +          +    P   L +  
Sbjct: 1   QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS---LKGLIAEELQAIPNVTLFQGP 57

Query: 90  VTEP------LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           +         L       +      +                 GT+     +      + 
Sbjct: 58  LLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLY 117

Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNPIGVR-SCYDEGKRVAETLMFDYHRQHGIEIRIAR 202
               +     P    ++      +    V    Y+         +F              
Sbjct: 118 GPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHA 177

Query: 203 IFNTYGPRMNIDDGRVVSNFIAQAIRGEP 231
            F+   P   +D    V   + Q  +  P
Sbjct: 178 PFDPDIPLPWLDAEHDVGPALLQIFKDGP 206

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

 Score = 57.3 bits (136), Expect = 2e-10
 Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 11/163 (6%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M IL+ G  G +G  L   L       +I +D +      +          + +   V +
Sbjct: 1   MNILLFGKTGQVGWELQRSL--APVGNLIALDVHSKEFCGDFSN------PKGVAETVRK 52

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
              +  D I + A   +    +  P      N      +   A   GA ++  ST  V+ 
Sbjct: 53  ---LRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFP 109

Query: 153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHG 195
                P  E+   +   +  ++     K + +        +  
Sbjct: 110 GTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTS 152

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
           F   N  + + G +G  G  L+ +++E      + +
Sbjct: 9  DFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL 45

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
          R+L+ G  G  G HL+D+++       ++ 
Sbjct: 4  RVLLAGATGLTGEHLLDRILSEPTLAKVIA 33

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 8/116 (6%), Positives = 23/116 (19%), Gaps = 6/116 (5%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
              + +V  G G +G      L       V+         +          +  +   + 
Sbjct: 22  KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA-QAAADSVNKRFKVNVTAAET 80

Query: 91  T-----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
                    +     ++        +  +          ++   N        G  
Sbjct: 81  ADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGID 136

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 28/181 (15%), Positives = 61/181 (33%), Gaps = 16/181 (8%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHD 89
           +   +L+  G+GF+    +D L ++   +V V       +K          P    +  D
Sbjct: 1   ATKSVLM-LGSGFVTRPTLDVLTDS-GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDD 58

Query: 90  VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL----NMLGLAKRVGA----- 140
                 +    +     P +            K +V+ T      M+ L +         
Sbjct: 59  AALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 118

Query: 141 --RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEI 198
              I  ++ +++ G P          G ++  GV +      ++ + LM +   ++GIE 
Sbjct: 119 MNEIGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAP--MNSKINDPLMKELKEKYGIEC 176

Query: 199 R 199
           +
Sbjct: 177 K 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	100.0
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	100.0
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	100.0
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	100.0
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	100.0
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	100.0
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	100.0
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	100.0
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	100.0
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	100.0
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	100.0
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	100.0
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	100.0
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	100.0
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.98
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.98
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.97
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.97
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.97
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.97
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.96
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.96
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	99.95
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.95
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.94
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.93
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.91
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.9
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.9
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.9
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.9
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.9
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.9
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.9
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.9
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.89
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.89
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.89
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.89
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.89
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.89
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.89
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.89
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.89
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.89
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.89
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.88
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.88
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.88
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.88
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.88
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.88
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.88
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.87
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.87
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.87
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.87
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.87
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.87
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.86
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.86
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.86
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.86
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.86
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.85
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.85
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.85
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.85
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.85
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.85
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.84
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.84
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.84
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.84
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.82
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.82
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.81
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.8
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.8
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.8
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.8
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.8
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.79
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.78
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.78
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.77
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.77
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.75
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.72
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.7
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.69
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.69
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.69
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.68
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.64
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.56
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.37
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.55
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.54
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.44
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.4
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.39
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.37
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.37
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.32
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.3
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.28
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.25
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	98.21
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.19
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	98.15
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.15
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.14
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.12
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	98.12
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.11
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.08
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.05
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.04
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.02
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.99
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.95
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.91
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.88
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.84
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.82
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.78
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.77
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.71
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.69
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.68
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.59
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.54
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.46
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.44
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.43
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.42
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.35
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.33
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.32
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.3
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.29
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.23
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.22
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.14
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.14
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.1
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.1
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.07
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.05
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.04
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.02
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.0
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.95
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.93
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.87
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.78
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.77
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.75
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.73
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.7
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.69
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.67
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.67
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.62
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.62
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.6
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.5
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.48
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.44
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.43
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	96.36
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.35
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.33
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.29
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.25
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	96.15
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.12
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.11
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.1
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.07
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.05
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.99
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.97
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.93
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.92
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.91
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.91
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.82
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.78
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.77
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.77
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.75
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.72
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.71
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.71
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.71
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.7
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.69
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.62
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.59
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.58
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.55
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.52
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.49
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.46
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.43
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.39
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.39
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.33
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.27
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.27
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.21
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.19
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.16
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.14
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.13
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.03
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.99
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.9
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.85
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.84
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.84
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.77
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.76
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.72
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.72
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.66
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.64
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.62
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.42
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.26
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.23
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	94.22
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.89
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	93.86
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.81
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.71
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	93.62
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.53
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.5
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	93.33
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	93.27
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	93.17
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.15
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.09
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	92.97
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.95
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	92.93
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.88
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.82
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	92.78
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	92.67
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.49
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	92.43
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.42
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.41
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.1
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	92.09
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.97
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	91.7
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.55
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.39
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	91.27
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.26
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.82
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.53
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	90.48
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	90.41
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	90.39
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	90.24
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.21
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.93
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	89.82
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	89.65
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.33
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	89.25
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	89.22
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	88.99
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	88.95
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.86
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.81
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	88.75
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	88.55
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.55
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	88.42
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	88.35
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	88.16
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	88.02
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	87.9
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	87.61
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	87.59
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	87.47
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	87.17
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	86.57
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	86.54
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	86.04
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	85.93
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	85.59
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	85.47
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	85.43
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	85.19
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	84.96
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.03
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	83.88
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	83.83
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	83.68
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.61
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	83.22
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	83.13
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.05
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	82.66
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	82.5
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	81.93
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	81.56
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	81.44
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	81.09
d2o14a2	208	Hypothetical protein YxiM {Bacillus subtilis [TaxI	80.86
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	80.32
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	80.21
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	80.15

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-42  Score=280.16  Aligned_cols=225  Identities=71%  Similarity=1.170  Sum_probs=200.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCccc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF  112 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~~~  112 (259)
                      |||||||||||||++|+++|+++|++ |+++++........+........+++...|+.+....++|+|||+|+......
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~~~~~   80 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHE-VTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPN   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcccCCchh
Confidence            79999999999999999999999998 99998765555555555555667888888888877889999999999776545


Q ss_pred             cccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHH
Q 025022          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR  192 (259)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~  192 (259)
                      +..++...+++|+.++.+++++|++.++++||+||..+|+.....+.+|+.+.+.++..|.+.|+.+|.++|.+++.+++
T Consensus        81 ~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~  160 (312)
T d2b69a1          81 YMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMK  160 (312)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999999899999999999998888888998777777888999999999999999999999


Q ss_pred             HhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          193 QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       193 ~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .++++++++||+++|||+.......+++.++..+..++++.+++++.+.++|+|++|+|++++.++
T Consensus       161 ~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~  226 (312)
T d2b69a1         161 QEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALM  226 (312)
T ss_dssp             HHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHH
T ss_pred             HhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHH
Confidence            999999999999999999876666799999999999999999999999999999999999998764

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=100.00  E-value=5.4e-39  Score=262.64  Aligned_cols=219  Identities=32%  Similarity=0.480  Sum_probs=188.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC-----eEEEEcCCCC-CCcchhhhccCCCceeEeecccCccc-----cCCcCEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN-----EVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~-----~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      |||||||||||||++|++.|+++|+.     +++++++... .....+.......+++++.+|+.+..     ...+|.|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            79999999999999999999999886     2444443322 22223333334568999999998877     6789999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      +|+|+.........+....+++|+.++.+++++|.+.++ +|||+||..+|+.....+++|++     +..|.+.|+.+|
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~~-----~~~p~~~Y~~sK  155 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESS-----PLEPNSPYAASK  155 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTS-----CCCCCSHHHHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCCC-----CCCCCCHHHHHH
Confidence            999988766566677888999999999999999999998 99999999999998888889987     888899999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .++|.+++.++++++++++++||+++|||+..+  ..+++.+++.+..++++.++++|.+.++|+|++|+|++++.++
T Consensus       156 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~--~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~  231 (322)
T d1r6da_         156 AGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP--EKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVL  231 (322)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT--TSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCc--CcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHH
Confidence            999999999999999999999999999998653  3589999999999999999999999999999999999998875

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-38  Score=261.92  Aligned_cols=220  Identities=25%  Similarity=0.292  Sum_probs=176.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhh-----ccCCCceeEeecccCccc-----c--CCcC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRK-----WIGHPRFELIRHDVTEPL-----L--IEVD   99 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~-----~~~~~~~~~~~~dl~~~~-----~--~~~d   99 (259)
                      |+|||||||||||++|+++|+++|++ |++++|..... ..+++.     .....+++++++|+++..     +  .++|
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYE-VHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCE-EEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            78999999999999999999999998 99999864321 111111     122468999999999887     2  3679


Q ss_pred             EEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC----eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCc
Q 025022          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSC  175 (259)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~  175 (259)
                      +|||+|+..+......++...+++|+.++.+|+++|++.++    +|||+||..+||.+...+++|++     +..|.++
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~-----~~~P~~~  155 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETT-----PFYPRSP  155 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTS-----CCCCCSH
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCC-----CCCCCCh
Confidence            99999998876666788889999999999999999998764    79999999999988888899987     7788899


Q ss_pred             hHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCC-CeEEecCCceeeeeeeHHHHHHH
Q 025022          176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGE-PLTVQAPGTQTRSFCYVSDMVCK  253 (259)
Q Consensus       176 Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~~  253 (259)
                      |+.+|.++|.+++.+++.++++++++||+++|||+..+.. ...+..++.....+. ....+|+++..++|+|++|+|++
T Consensus       156 Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a  235 (357)
T d1db3a_         156 YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKM  235 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHH
Confidence            9999999999999999999999999999999999755432 224444555555444 45566889999999999999999


Q ss_pred             HHhhh
Q 025022          254 SCFLA  258 (259)
Q Consensus       254 ~~~~l  258 (259)
                      ++.++
T Consensus       236 ~~~~~  240 (357)
T d1db3a_         236 QWMML  240 (357)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            98764

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=100.00  E-value=3.7e-38  Score=261.34  Aligned_cols=224  Identities=28%  Similarity=0.445  Sum_probs=185.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC-CCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHL  104 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~  104 (259)
                      |||||||||||||++|+++|+++|+.+|+++++... .....+.......+++++.+|+++..       ..++|+|||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   80 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL   80 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence            799999999999999999999999985666665432 23344555555678999999999987       2369999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC---------C-eEEEEecceeecCCCCCCCCCCC-----cCCCCC
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---------A-RILLTSTSEVYGDPLVHPQDESY-----WGNVNP  169 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~-~~i~~Ss~~~~~~~~~~~~~e~~-----~~~~~~  169 (259)
                      |+.........++...+++|+.++.+++++|++.+         + +|||+||..+|+.....+..|..     ..+.++
T Consensus        81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~  160 (361)
T d1kewa_          81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA  160 (361)
T ss_dssp             CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred             ccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCCC
Confidence            99876555566788999999999999999998753         3 89999999999976554433322     112336


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHH
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSD  249 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  249 (259)
                      ..|.+.|+.+|.++|.+++.+++.++++++++||+++|||+...  ..+++.++..+..++++.++++|++.++|+|++|
T Consensus       161 ~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~--~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D  238 (361)
T d1kewa_         161 YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNALEGKPLPIYGKGDQIRDWLYVED  238 (361)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT--TSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCc--CcHHHHHHHHHHcCCCcEEeCCCCeEEeCEEHHH
Confidence            67889999999999999999999999999999999999998643  3488999999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q 025022          250 MVCKSCFLA  258 (259)
Q Consensus       250 ~a~~~~~~l  258 (259)
                      +|+++..++
T Consensus       239 ~a~ai~~~~  247 (361)
T d1kewa_         239 HARALHMVV  247 (361)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.3e-37  Score=254.84  Aligned_cols=223  Identities=28%  Similarity=0.397  Sum_probs=192.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhh---hc---cCCCceeEeecccCccc-----cCCc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR---KW---IGHPRFELIRHDVTEPL-----LIEV   98 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~---~~---~~~~~~~~~~~dl~~~~-----~~~~   98 (259)
                      ++.|+|||||||||||++|+++|+++|++ |++++|........+.   ..   .....++++.+|+.+..     ...+
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQK-VVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            45689999999999999999999999998 9999875544332221   11   11257899999999877     6688


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchH
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYD  177 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~  177 (259)
                      +.++|+++.........++...+++|+.++.+++++|.+.++ +|||+||..+|+.....+.+|++     +..|.+.|+
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~-----~~~p~~~Y~  167 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDT-----IGKPLSPYA  167 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTC-----CCCCCSHHH
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCCC-----CCCCCCcch
Confidence            999999987665556678888999999999999999999999 99999999999998888899987     788899999


Q ss_pred             HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHH
Q 025022          178 EGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSC  255 (259)
Q Consensus       178 ~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  255 (259)
                      .+|.++|++++.+++..+++++++||+++|||+..+..  ..++..++..+..++++.++++|.+.++|+|++|+|.++.
T Consensus       168 ~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~  247 (341)
T d1sb8a_         168 VTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANL  247 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhh
Confidence            99999999999999999999999999999999876543  4488899999999999999999999999999999999987


Q ss_pred             hhh
Q 025022          256 FLA  258 (259)
Q Consensus       256 ~~l  258 (259)
                      .++
T Consensus       248 ~~~  250 (341)
T d1sb8a_         248 LAA  250 (341)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            764

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=100.00  E-value=1.2e-35  Score=245.08  Aligned_cols=224  Identities=27%  Similarity=0.354  Sum_probs=178.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC--CCC-CcchhhhccCCCceeEeecccCccc-----cCCcCEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY--FTG-SKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~--~~~-~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      ++|+|||||||||||++|+++|+++|+. |.++.+.  ... ....+.. ....+++++.+|+.+.+     ..+++.|+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~-v~v~~~d~~~~~~~~~~~~~-~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~   78 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNKANLEA-ILGDRVELVVGDIADAELVDKLAAKADAIV   78 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCGGGTGG-GCSSSEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCC-eEEEEEeCCCccccHHHHHH-hhcCCeEEEEccCCCHHHHHHHHhhhhhhh
Confidence            4799999999999999999999999987 4444332  222 2222222 23468999999999887     67899999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCC---CCCC----CCCCcCCCCCCCCCCc
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL---VHPQ----DESYWGNVNPIGVRSC  175 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~---~~~~----~e~~~~~~~~~~~~~~  175 (259)
                      |+|+.........++...+++|+.++.++++++...+.++|++||..+|+...   ..+.    ....+....+..|.+.
T Consensus        79 ~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~  158 (346)
T d1oc2a_          79 HYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSP  158 (346)
T ss_dssp             ECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSH
T ss_pred             hhhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCH
Confidence            99988766555677889999999999999999999999999999999997421   1111    1112222336778899


Q ss_pred             hHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHH
Q 025022          176 YDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSC  255 (259)
Q Consensus       176 Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  255 (259)
                      |+.+|.++|.+++.+++..+++++++||+++|||....  ...+..++.....+.++.++++++..++|+|++|+|++++
T Consensus       159 Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~--~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~  236 (346)
T d1oc2a_         159 YSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI--EKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVW  236 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCT--TSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCc--cchhHHHHHHHHcCCceeEeCCCCccccccchhhHHHHHH
Confidence            99999999999999999999999999999999997543  3477788888888888999999999999999999999988


Q ss_pred             hhh
Q 025022          256 FLA  258 (259)
Q Consensus       256 ~~l  258 (259)
                      .++
T Consensus       237 ~~~  239 (346)
T d1oc2a_         237 AIL  239 (346)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-36  Score=248.21  Aligned_cols=220  Identities=20%  Similarity=0.212  Sum_probs=179.7

Q ss_pred             CEE-EEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC-Ccchhhhcc------CCCceeEeecccCccc-------cCC
Q 025022           33 MRI-LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWI------GHPRFELIRHDVTEPL-------LIE   97 (259)
Q Consensus        33 ~~v-lItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~------~~~~~~~~~~dl~~~~-------~~~   97 (259)
                      ||| ||||||||||++|+++|+++|++ |++++|.... ....+....      ...+++++.+|+++..       ..+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~-V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   79 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYE-VHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK   79 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCE-EEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence            577 99999999999999999999998 9999986432 112222211      1247899999999877       347


Q ss_pred             cCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC----eEEEEecceeecCCCCCCCCCCCcCCCCCCCCC
Q 025022           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVR  173 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~  173 (259)
                      +++++|+++.........+....+++|+.++.++++++++++.    +|||+||..+||.....+++|++     +..|.
T Consensus        80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~-----~~~P~  154 (347)
T d1t2aa_          80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETT-----PFYPR  154 (347)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTS-----CCCCC
T ss_pred             cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCC-----CCCCC
Confidence            8899999987665555667778889999999999999998765    79999999999988888889987     78889


Q ss_pred             CchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHH
Q 025022          174 SCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV  251 (259)
Q Consensus       174 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  251 (259)
                      ++|+.+|.++|++++.+++.++++++++||+++|||......  ......+........++..++++.+.++|+|++|+|
T Consensus       155 ~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~  234 (347)
T d1t2aa_         155 SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYV  234 (347)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEecHHH
Confidence            999999999999999999999999999999999999754432  223344555566777788889999999999999999


Q ss_pred             HHHHhhh
Q 025022          252 CKSCFLA  258 (259)
Q Consensus       252 ~~~~~~l  258 (259)
                      +++..++
T Consensus       235 ~a~~~~~  241 (347)
T d1t2aa_         235 EAMWLML  241 (347)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-35  Score=242.89  Aligned_cols=222  Identities=26%  Similarity=0.453  Sum_probs=185.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a~  106 (259)
                      |||||||||||||++|+++|+++|+.+|+++++....    .....+.++++++.+|+++..      ..++|+|||+|+
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~----~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA----ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG----GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc----hhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            7999999999999999999999996559999874332    233334578999999998765      557999999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCC--CCCCCCCCchHHHHHHHH
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN--VNPIGVRSCYDEGKRVAE  184 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~--~~~~~~~~~Y~~sK~~~e  184 (259)
                      .........++...+..|+.++.+++++|.+.+.++++.||..+|+........|.....  .+...|...|+.+|.++|
T Consensus        77 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E  156 (342)
T d2blla1          77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD  156 (342)
T ss_dssp             CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred             cccccccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcchhhhcccchh
Confidence            877655667778899999999999999999999988999999999987766666644322  224467788999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEeccccCCCCCCCC------ccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          185 TLMFDYHRQHGIEIRIARIFNTYGPRMNIDD------GRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       185 ~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ++++.+++.++++++++|++.+|||......      ...+..++..++.++++.++++|++.++|+|++|+|+++..++
T Consensus       157 ~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~  236 (342)
T d2blla1         157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII  236 (342)
T ss_dssp             HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHH
T ss_pred             hhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeeh
Confidence            9999999999999999999999998654321      3367888899999999999999999999999999999998875

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.6e-35  Score=240.46  Aligned_cols=220  Identities=21%  Similarity=0.217  Sum_probs=181.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-cchhhhccCCCceeEeecccCccc-------cCCcCEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHL  104 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~  104 (259)
                      |+|||||||||||++|+++|+++|++ |++++|..... ...++.+....+++++.+|+.+..       ....++++|+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~-V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYR-VHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence            68999999999999999999999999 99999875443 344444444568999999999977       3457889999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV  182 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~  182 (259)
                      |+.........++...+..|+.++.+++++|++.+.  +|++.||..+|+.......+|++     +..|.+.|+.+|.+
T Consensus        80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~-----~~~p~~~Y~~sK~~  154 (321)
T d1rpna_          80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENT-----PFYPRSPYGVAKLY  154 (321)
T ss_dssp             CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTS-----CCCCCSHHHHHHHH
T ss_pred             cccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCC-----CccccChhHHHHHH
Confidence            887766556677889999999999999999999987  88999999999887777777876     77888999999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHc-CCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIR-GEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       183 ~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +|++++.++..++++++++||+++|||...... .+.+..++..... +.+...++++++.++|+|++|+|+++.+++
T Consensus       155 ~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~  232 (321)
T d1rpna_         155 GHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLML  232 (321)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHH
Confidence            999999999999999999999999999754432 2234444444444 445556789999999999999999998875

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3e-34  Score=235.78  Aligned_cols=220  Identities=25%  Similarity=0.396  Sum_probs=174.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh--ccCCCceeEeecccCccc-------cCCcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK--WIGHPRFELIRHDVTEPL-------LIEVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~~~dl~~~~-------~~~~d~vi~  103 (259)
                      |||||||||||||++|++.|+++|++ |++++|...........  .....+++++++|+++.+       ..++|+|||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH   79 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHD-VIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCE-EEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence            78999999999999999999999998 99998755443332221  223458999999999988       237999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHH
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV  182 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~  182 (259)
                      +|+.........++...+++|+.++.+++++|++.++ ++|++||..+|+.....+..|..    ++..|...|+.+|..
T Consensus        80 lAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~----~~~~p~~~Y~~sK~~  155 (338)
T d1udca_          80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF----PTGTPQSPYGKSKLM  155 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS----CCCCCSSHHHHHHHH
T ss_pred             CCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccccccccc----ccCCCcchHHHHHhh
Confidence            9997665455567889999999999999999999998 99999999999877665555543    255678899999999


Q ss_pred             HHHHHHHHHHH-hCCcEEEEEeccccCCCCCCC--------CccHHHHHHHHHHc-CCCeEEecC------Cceeeeeee
Q 025022          183 AETLMFDYHRQ-HGIEIRIARIFNTYGPRMNID--------DGRVVSNFIAQAIR-GEPLTVQAP------GTQTRSFCY  246 (259)
Q Consensus       183 ~e~~~~~~~~~-~~~~~~~lr~~~v~g~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~i~  246 (259)
                      +|.++..+... .+++++++|++++|||.....        ...+++.++..+.. ..++.++|+      +...++|+|
T Consensus       156 ~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~  235 (338)
T d1udca_         156 VEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH  235 (338)
T ss_dssp             HHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEE
T ss_pred             hhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEE
Confidence            99999876655 489999999999999865321        12366677766654 456776654      677899999


Q ss_pred             HHHHHHHHHhh
Q 025022          247 VSDMVCKSCFL  257 (259)
Q Consensus       247 v~D~a~~~~~~  257 (259)
                      ++|++.++..+
T Consensus       236 v~D~~~~~~~~  246 (338)
T d1udca_         236 VMDLADGHVVA  246 (338)
T ss_dssp             HHHHHHHHHHH
T ss_pred             Eeehhhhcccc
Confidence            99999877654

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.5e-34  Score=236.01  Aligned_cols=223  Identities=23%  Similarity=0.283  Sum_probs=178.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      .++|||||||||||||++|+++|+++|+. |+++++.........     ....++..+|+.+.+     +.++|.|||+
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~-V~~~d~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~   86 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHY-VIASDWKKNEHMTED-----MFCDEFHLVDLRVMENCLKVTEGVDHVFNL   86 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCSSSCGG-----GTCSEEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEeCCCccchhhh-----cccCcEEEeechhHHHHHHHhhcCCeEeec
Confidence            46799999999999999999999999998 998887544332211     125577888888876     6789999999


Q ss_pred             cCCCCcccc-ccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCc--CCCCCCCCCCchHHHH
Q 025022          105 ACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYW--GNVNPIGVRSCYDEGK  180 (259)
Q Consensus       105 a~~~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~--~~~~~~~~~~~Y~~sK  180 (259)
                      |+....... ...+...+..|+.++.+++++|++.++ +||++||..+|+.....+.+|...  .+..+..|.+.|+.+|
T Consensus        87 a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK  166 (363)
T d2c5aa1          87 AADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEK  166 (363)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHH
T ss_pred             ccccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHHHH
Confidence            987654322 456788899999999999999999999 999999999999766666555432  2333667889999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--c-cHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhh
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--G-RVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~  257 (259)
                      .++|++++.+.+.++++++++||+++|||......  . ..............+...+++|.+.++|+|++|+++++..+
T Consensus       167 ~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~  246 (363)
T d2c5aa1         167 LATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRL  246 (363)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhHHHHHHHHH
Confidence            99999999999999999999999999998754332  1 13344445556777788889999999999999999998876


Q ss_pred             h
Q 025022          258 A  258 (259)
Q Consensus       258 l  258 (259)
                      +
T Consensus       247 ~  247 (363)
T d2c5aa1         247 T  247 (363)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-33  Score=230.33  Aligned_cols=207  Identities=23%  Similarity=0.280  Sum_probs=164.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHL  104 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~  104 (259)
                      .|||||||||||||++|+++|+++|+. |+++++..+                   .|+.+..       ..++|.++|+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~-vi~~~~~~~-------------------~~~~~~~~~~~~~~~~~~d~v~~~   61 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDV-ELVLRTRDE-------------------LNLLDSRAVHDFFASERIDQVYLA   61 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTE-EEECCCTTT-------------------CCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCE-EEEecCchh-------------------ccccCHHHHHHHHhhcCCCEEEEc
Confidence            468999999999999999999999998 766654322                   1222222       3468999999


Q ss_pred             cCCCCcc-ccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHH
Q 025022          105 ACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV  182 (259)
Q Consensus       105 a~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~  182 (259)
                      |+..... ....+....+.+|+.++.+++++|++.++ +|||+||.++|+.....+++|+.+....+..+.+.|+.+|.+
T Consensus        62 a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~  141 (315)
T d1e6ua_          62 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIA  141 (315)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHH
T ss_pred             chhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHH
Confidence            9765432 22345677889999999999999999998 999999999999888888888765555455556789999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC--ccHHH-----HHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHH
Q 025022          183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVS-----NFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSC  255 (259)
Q Consensus       183 ~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  255 (259)
                      +|++++.++++++++++++||+++|||+.....  .....     ........+..+...+++...++|+|++|+++++.
T Consensus       142 ~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~  221 (315)
T d1e6ua_         142 GIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASI  221 (315)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHH
Confidence            999999999999999999999999999865432  22222     22345557788888899999999999999999997


Q ss_pred             hhh
Q 025022          256 FLA  258 (259)
Q Consensus       256 ~~l  258 (259)
                      .++
T Consensus       222 ~~~  224 (315)
T d1e6ua_         222 HVM  224 (315)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            764

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-33  Score=235.47  Aligned_cols=225  Identities=27%  Similarity=0.309  Sum_probs=171.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC-------------CCC---cchhhh--ccCCCceeEeecccCcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-------------TGS---KDNLRK--WIGHPRFELIRHDVTEP   93 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~-------------~~~---~~~~~~--~~~~~~~~~~~~dl~~~   93 (259)
                      ||||||||||||||++|+++|+++|++ |++++...             ...   ...+..  .....+++++.+|++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~-V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYE-VCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF   79 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence            689999999999999999999999998 99885210             000   011111  11235789999999988


Q ss_pred             c-------cCCcCEEEEccCCCCcccccc---ChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCCCCCC
Q 025022           94 L-------LIEVDQIYHLACPASPIFYKY---NPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        94 ~-------~~~~d~vi~~a~~~~~~~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                      +       ..++|+|||+|+.........   .+...+.+|+.++.+++++|++.+.  ++++.||..+|+... .+..|
T Consensus        80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~-~~~~~  158 (393)
T d1i24a_          80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIEE  158 (393)
T ss_dssp             HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBCS
T ss_pred             HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccc-ccccc
Confidence            7       236899999998765433222   3456789999999999999999887  677777777776533 22222


Q ss_pred             CCcC---------CCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC---------------Ccc
Q 025022          162 SYWG---------NVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNID---------------DGR  217 (259)
Q Consensus       162 ~~~~---------~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~---------------~~~  217 (259)
                      ..+.         ...+..|.+.|+.+|.++|.+++.++++++++++++||+++|||+..+.               ...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  238 (393)
T d1i24a_         159 GYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGT  238 (393)
T ss_dssp             SEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCC
T ss_pred             ccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCcccccccccccccccccccccc
Confidence            2110         1125677889999999999999999999999999999999999975432               123


Q ss_pred             HHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          218 VVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ++..++.....++++.++|++.+.+||+|++|+|++++.++
T Consensus       239 ~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~  279 (393)
T d1i24a_         239 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAI  279 (393)
T ss_dssp             HHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHH
T ss_pred             chhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHH
Confidence            67888888999999999999999999999999999998765

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.3e-32  Score=224.43  Aligned_cols=219  Identities=20%  Similarity=0.243  Sum_probs=170.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC-Ccchhhhc------cCCCceeEeecccCccc-------cCCc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKW------IGHPRFELIRHDVTEPL-------LIEV   98 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~------~~~~~~~~~~~dl~~~~-------~~~~   98 (259)
                      |++||||||||||++|+++|+++|+. |++++|..+. ....+...      .....+.++.+|+.+..       ..++
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~   80 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYE-VHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP   80 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCE-EEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence            78999999999999999999999999 9999986432 11121111      22356888999999876       3478


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-----C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCC
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV  172 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~  172 (259)
                      |+|||+|+.........++...+..|+.++.++++++++..     . ++++.||..+++.. ..+.+|++     +..|
T Consensus        81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~-~~~~~E~~-----~~~p  154 (339)
T d1n7ha_          81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST-PPPQSETT-----PFHP  154 (339)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS-CSSBCTTS-----CCCC
T ss_pred             chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccC-CCCCCCCC-----CCCC
Confidence            99999999876555556788899999999999999887532     2 67888887777653 45677776     7889


Q ss_pred             CCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHH-HHHHcCCCeEEecCCceeeeeeeHHHH
Q 025022          173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFI-AQAIRGEPLTVQAPGTQTRSFCYVSDM  250 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~  250 (259)
                      .+.|+.+|..+|.++..+++.++++++++||+++|||...... ...+...+ .......+..+.|++.+.++|+|++|+
T Consensus       155 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~  234 (339)
T d1n7ha_         155 RSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDY  234 (339)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehH
Confidence            9999999999999999999999999999999999999754332 11233333 333445556667889999999999999


Q ss_pred             HHHHHhhh
Q 025022          251 VCKSCFLA  258 (259)
Q Consensus       251 a~~~~~~l  258 (259)
                      |+++..++
T Consensus       235 a~~~~~~~  242 (339)
T d1n7ha_         235 VEAMWLML  242 (339)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.98  E-value=9.2e-31  Score=218.39  Aligned_cols=226  Identities=23%  Similarity=0.344  Sum_probs=168.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCC-----c---chh----h------hccCCCceeEeecccCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGS-----K---DNL----R------KWIGHPRFELIRHDVTE   92 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~-----~---~~~----~------~~~~~~~~~~~~~dl~~   92 (259)
                      .|||||||||||||++|+++|+++ |++ |+++++.....     .   +..    .      .......+.++.+|++|
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~-V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHS-VVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCE-EEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCE-EEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence            589999999999999999999974 777 99987422110     0   000    0      00112467889999998


Q ss_pred             cc--------cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCC--C
Q 025022           93 PL--------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQD--E  161 (259)
Q Consensus        93 ~~--------~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~--e  161 (259)
                      .+        ..++|+|||+|+.........++...++.|+.++.++++++++.++ +++++||..+|+........  +
T Consensus        81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  160 (383)
T d1gy8a_          81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA  160 (383)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccccccccc
Confidence            76        4578999999998766555667788899999999999999999998 99999999988765432221  1


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-------ccHHHHHHHHHH-------
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-------GRVVSNFIAQAI-------  227 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-------~~~~~~~~~~~~-------  227 (259)
                      ....+..+..|.+.|+.+|...|++++.+.+.++++++++|++++|||+.....       ...++.++..+.       
T Consensus       161 ~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~  240 (383)
T d1gy8a_         161 EPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ  240 (383)
T ss_dssp             CCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-
T ss_pred             cccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhccccc
Confidence            222233377889999999999999999999999999999999999999875432       123444433322       


Q ss_pred             ---------cCCCeEEec------CCceeeeeeeHHHHHHHHHhhh
Q 025022          228 ---------RGEPLTVQA------PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       228 ---------~~~~~~~~~------~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                               .+.++.++|      +|.+.++|+|++|+|++++.++
T Consensus       241 ~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~  286 (383)
T d1gy8a_         241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILAL  286 (383)
T ss_dssp             ----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHH
T ss_pred             cchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHH
Confidence                     345556654      3677899999999999998764

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=4e-31  Score=217.82  Aligned_cols=219  Identities=25%  Similarity=0.368  Sum_probs=165.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhh--hccCCCceeEeecccCccc-------cCCcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDVTEPL-------LIEVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~  103 (259)
                      |.|||||||||||++|+++|+++|++ |+++++......+...  ......+++++.+|+.+.+       ..++|+|||
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~-V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih   80 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYD-CVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH   80 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCe-EEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEE
Confidence            57999999999999999999999998 9998865444332222  1122457899999999887       237999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCC----CCCCCCCcCCCCCCCCCCchHH
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV----HPQDESYWGNVNPIGVRSCYDE  178 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~----~~~~e~~~~~~~~~~~~~~Y~~  178 (259)
                      +|+.........++..++.+|+.++.+++++|++.++ +||++||..+|+....    .+.+|+.     +..|.+.|+.
T Consensus        81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~-----~~~p~~~Y~~  155 (347)
T d1z45a2          81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEEC-----PLGPTNPYGH  155 (347)
T ss_dssp             CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTS-----CCCCCSHHHH
T ss_pred             ccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCcccccc-----CCCCCChhHh
Confidence            9998765555667788999999999999999999998 9999999999986543    3344443     7778899999


Q ss_pred             HHHHHHHHHHHHHHH--hCCcEEEEEeccccCCCCCC--------CCccHHHHHHHHHH-cCCCeEEecCCc------ee
Q 025022          179 GKRVAETLMFDYHRQ--HGIEIRIARIFNTYGPRMNI--------DDGRVVSNFIAQAI-RGEPLTVQAPGT------QT  241 (259)
Q Consensus       179 sK~~~e~~~~~~~~~--~~~~~~~lr~~~v~g~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~  241 (259)
                      +|.++|++++.+.+.  .+++++++|++++||+....        ....+++.+..... .+.++.++|++.      ..
T Consensus       156 sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~  235 (347)
T d1z45a2         156 TKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPI  235 (347)
T ss_dssp             HHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCE
T ss_pred             HHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCcee
Confidence            999999999998754  47899999999999975422        11235666555554 345666666544      45


Q ss_pred             eeeeeHHHHHHHHHhh
Q 025022          242 RSFCYVSDMVCKSCFL  257 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~  257 (259)
                      +|++++.|.+.+++.+
T Consensus       236 ~d~~~~~~~~~~~~~~  251 (347)
T d1z45a2         236 RDYIHVVDLAKGHIAA  251 (347)
T ss_dssp             ECEEEHHHHHHHHHHH
T ss_pred             eeeeeeeccccccccc
Confidence            6677777777776654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-30  Score=214.00  Aligned_cols=220  Identities=26%  Similarity=0.368  Sum_probs=169.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC------cchhhh--ccCCCceeEeecccCccc-------cCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------KDNLRK--WIGHPRFELIRHDVTEPL-------LIE   97 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~------~~~~~~--~~~~~~~~~~~~dl~~~~-------~~~   97 (259)
                      +||||||||||||++|+++|+++|++ |+++++.....      ....+.  .....++.++.+|++|.+       ...
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~-V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   81 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYL-PVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS   81 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCC-EEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccccc
Confidence            79999999999999999999999999 99987532221      111111  123468999999999887       456


Q ss_pred             cCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCch
Q 025022           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCY  176 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y  176 (259)
                      +++++|+|+..+......++...++.|+.++.++++++++.++ +|||+||..+|+........+..    ....+.++|
T Consensus        82 ~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~----~~~~~~~~Y  157 (346)
T d1ek6a_          82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH----PTGGCTNPY  157 (346)
T ss_dssp             EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS----CCCCCSSHH
T ss_pred             cccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccc----cccccCChH
Confidence            7899999998776556667888999999999999999999999 99999999999876544333322    134566889


Q ss_pred             HHHHHHHHHHHHHHHHH-hCCcEEEEEeccccCCCCCC--------CCccHHHHHHHHHH-cCCCeEEec------CCce
Q 025022          177 DEGKRVAETLMFDYHRQ-HGIEIRIARIFNTYGPRMNI--------DDGRVVSNFIAQAI-RGEPLTVQA------PGTQ  240 (259)
Q Consensus       177 ~~sK~~~e~~~~~~~~~-~~~~~~~lr~~~v~g~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~------~~~~  240 (259)
                      +.+|..+|+.++.+++. .+++.+++|++++|||....        ....+++.+..... .+.++.+++      .+.+
T Consensus       158 ~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~  237 (346)
T d1ek6a_         158 GKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTG  237 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCe
Confidence            99999999999988775 48999999999999986432        11235665555444 456666654      3667


Q ss_pred             eeeeeeHHHHHHHHHhh
Q 025022          241 TRSFCYVSDMVCKSCFL  257 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~  257 (259)
                      .+||+|++|+|.++..+
T Consensus       238 ~Rdfi~v~D~a~~~~~~  254 (346)
T d1ek6a_         238 VRDYIHVVDLAKGHIAA  254 (346)
T ss_dssp             EECEEEHHHHHHHHHHH
T ss_pred             eEeEEEEEeccchhhhh
Confidence            89999999999988765

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.97  E-value=2.4e-30  Score=211.94  Aligned_cols=224  Identities=27%  Similarity=0.380  Sum_probs=170.9

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC-CcchhhhccCCCceeEeecccCccc-----c--CCcCEEEEcc
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPL-----L--IEVDQIYHLA  105 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~dl~~~~-----~--~~~d~vi~~a  105 (259)
                      ||||||||||||++|+++|+++|++ |+++++.... ..+.+.......+++++.+|+++.+     +  .++|+|||+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~-V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a   80 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGID-LIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence            7999999999999999999999998 9998754332 2233333344578999999999876     2  3579999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEeccee-ecCCCCCCCCCC-----------CcCCCCCCCC
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV-YGDPLVHPQDES-----------YWGNVNPIGV  172 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~-~~~~~~~~~~e~-----------~~~~~~~~~~  172 (259)
                      +.........++...+++|+.++.+++++|.+.++ ++|++||..+ ++.....+..+.           .+....+..|
T Consensus        81 a~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
T d1orra_          81 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDF  160 (338)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCC
T ss_pred             ccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcccc
Confidence            98765555567889999999999999999999998 6666666544 443322221111           1111225567


Q ss_pred             CCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-ccHHHHHHHHHH-----cCCCeEEecCCceeeeeee
Q 025022          173 RSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAI-----RGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~  246 (259)
                      .+.|+.+|...|.+.......++....++|++++|++...... ...+..++..+.     .++++.++|+|...++|+|
T Consensus       161 ~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~  240 (338)
T d1orra_         161 HSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLH  240 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEE
T ss_pred             ccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCceeEeeec
Confidence            7899999999999999999999999999999999976643332 335666665544     3678999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      ++|++++++.++
T Consensus       241 v~D~~~~~~~~l  252 (338)
T d1orra_         241 AEDMISLYFTAL  252 (338)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             ccchhhHHHHHH
Confidence            999999998764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.97  E-value=5.3e-30  Score=211.60  Aligned_cols=221  Identities=20%  Similarity=0.235  Sum_probs=175.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIY  102 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi  102 (259)
                      .++|||||||||||||++|+++|+++|++ |++++|+.......++......+++++.+|++|.+       ...+|+|+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~-V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~   84 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF   84 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence            46899999999999999999999999998 99999987665555444333468999999999877       34689999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCC-CCCCCCCCcCCCCCCCCCCchHHH
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPL-VHPQDESYWGNVNPIGVRSCYDEG  179 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~-~~~~~e~~~~~~~~~~~~~~Y~~s  179 (259)
                      |+|+.........++...+.+|+.++.++++++++.+.  .+++.||...+.... ..+.+|+.     +..|.+.|+.+
T Consensus        85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-----~~~p~~~y~~~  159 (356)
T d1rkxa_          85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENE-----AMGGYDPYSNS  159 (356)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTS-----CBCCSSHHHHH
T ss_pred             hhhccccccccccCCccccccccccchhhhhhhhcccccccccccccccccccccccccccccc-----ccCCCCccccc
Confidence            99998766555677889999999999999999999876  555555555544333 34444443     67788899999


Q ss_pred             HHHHHHHHHHHHH---------HhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHH
Q 025022          180 KRVAETLMFDYHR---------QHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDM  250 (259)
Q Consensus       180 K~~~e~~~~~~~~---------~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  250 (259)
                      |...|..+..++.         .+++.++++||+++|||+... ...+++.+++....+.++ +++.+.+.++++|++|+
T Consensus       160 k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~-~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~v~D~  237 (356)
T d1rkxa_         160 KGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWA-LDRIVPDILRAFEQSQPV-IIRNPHAIRPWQHVLEP  237 (356)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCC-SSCHHHHHHHHHHTTCCE-ECSCTTCEECCEETHHH
T ss_pred             cccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcch-hhHHHHHHHHHHhCCCce-EEeeccccccccccccc
Confidence            9999999887765         346789999999999998543 244777788777766654 57888999999999999


Q ss_pred             HHHHHhhh
Q 025022          251 VCKSCFLA  258 (259)
Q Consensus       251 a~~~~~~l  258 (259)
                      +.++..++
T Consensus       238 ~~a~~~~~  245 (356)
T d1rkxa_         238 LSGYLLLA  245 (356)
T ss_dssp             HHHHHHHH
T ss_pred             cchhhhhh
Confidence            99987764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.97  E-value=9.8e-30  Score=209.01  Aligned_cols=222  Identities=20%  Similarity=0.196  Sum_probs=164.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh----ccCCCceeEeecccCccc-----cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK----WIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      ++++|||||||||||++|+++|+++|++ |+++.|+..+.. .++.    .........+.+|+.+..     +.++|++
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~-V~~~vR~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v   87 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYK-VRGTARSASKLA-NLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHH-HHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEeCCchhHH-HHHHhhhccccccccEEEeccccchhhhhhhcccchhh
Confidence            4799999999999999999999999998 999888543221 1111    111223445778998876     6789999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhC-C-eEEEEecceeecCCC----CCCCCCCCcC----------
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL----VHPQDESYWG----------  165 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~~Ss~~~~~~~~----~~~~~e~~~~----------  165 (259)
                      +|+++...   ...+....+..|+.++.+++++|.+.+ + +|||+||..++....    ....+|+.|.          
T Consensus        88 ~~~a~~~~---~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  164 (342)
T d1y1pa1          88 AHIASVVS---FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTL  164 (342)
T ss_dssp             EECCCCCS---CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHS
T ss_pred             hhhccccc---ccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccccc
Confidence            99998764   244567788899999999999999874 5 999999986533211    2223333321          


Q ss_pred             -CCCCCCCCCchHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCC-ccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          166 -NVNPIGVRSCYDEGKRVAETLMFDYHRQHG--IEIRIARIFNTYGPRMNIDD-GRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       166 -~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~lr~~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                       +.++..|.+.|+.+|..+|++++.+++.++  ++++++||+++|||...+.. ...+..++..+.++...... .+...
T Consensus       165 ~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~  243 (342)
T d1y1pa1         165 PESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL-ALMPP  243 (342)
T ss_dssp             CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH-HTCCS
T ss_pred             cccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCccc-CCccc
Confidence             223555677899999999999999988764  67889999999999765543 34677788888877765543 34667


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ++|+|++|+|++++.++
T Consensus       244 ~~~v~v~Dva~~~i~~l  260 (342)
T d1y1pa1         244 QYYVSAVDIGLLHLGCL  260 (342)
T ss_dssp             EEEEEHHHHHHHHHHHH
T ss_pred             eeeeeHHHHHHHHHHhh
Confidence            89999999999987654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.4e-28  Score=187.49  Aligned_cols=193  Identities=14%  Similarity=0.040  Sum_probs=144.7

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEE
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      ..|++++|+|||||||||++|+++|+++|. ..|+++.|++.......     ...+....+|+.+.+     +.++|++
T Consensus        10 ~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-----~~~i~~~~~D~~~~~~~~~~~~~~d~v   84 (232)
T d2bkaa1          10 FRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVG   84 (232)
T ss_dssp             HHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred             hCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc-----cceeeeeeecccccccccccccccccc
Confidence            347889999999999999999999999985 24999998765433222     136777778887766     6789999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      ||++|...   ...+...+.++|+.++.+++++|++.++ +|||+||..++..                  +.+.|+.+|
T Consensus        85 i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~------------------~~~~Y~~~K  143 (232)
T d2bkaa1          85 FCCLGTTR---GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS------------------SNFLYLQVK  143 (232)
T ss_dssp             EECCCCCH---HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHH
T ss_pred             cccccccc---cccchhhhhhhcccccceeeecccccCccccccCCccccccC------------------ccchhHHHH
Confidence            99998642   2334567788999999999999999999 9999999876542                  235699999


Q ss_pred             HHHHHHHHHHHHHhCC-cEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          181 RVAETLMFDYHRQHGI-EIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~-~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ..+|+.+    .+.++ .++|+||+.+||++...   +....+........+     ........|+++|+|++++.++
T Consensus       144 ~~~E~~l----~~~~~~~~~IlRP~~i~G~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~I~~~dvA~a~i~~~  210 (232)
T d2bkaa1         144 GEVEAKV----EELKFDRYSVFRPGVLLCDRQES---RPGEWLVRKFFGSLP-----DSWASGHSVPVVTVVRAMLNNV  210 (232)
T ss_dssp             HHHHHHH----HTTCCSEEEEEECCEEECTTGGG---SHHHHHHHHHHCSCC-----TTGGGGTEEEHHHHHHHHHHHH
T ss_pred             HHhhhcc----ccccccceEEecCceeecCCCcC---cHHHHHHHHHhhccC-----CcccCCCeEEHHHHHHHHHHHH
Confidence            9999887    44465 48999999999987432   233344444443322     2233445799999999988765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.96  E-value=4.2e-28  Score=193.64  Aligned_cols=189  Identities=23%  Similarity=0.227  Sum_probs=160.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~a  105 (259)
                      |||||||||||||++|+++|.++|++ |++++|++                    +|+.+..       ..++|+|||+|
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~-Vi~~~r~~--------------------~D~~d~~~~~~~l~~~~~d~vih~a   60 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVE-VIPTDVQD--------------------LDITNVLAVNKFFNEKKPNVVINCA   60 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEE-EEEECTTT--------------------CCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCE-EEEeechh--------------------ccCCCHHHHHHHHHHcCCCEEEeec
Confidence            78999999999999999999999998 99998743                    2333333       23689999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      +..........+......|+.....+.+.+...+..++++||..+|+.....+.+|.+     +..+...|+.+|...|+
T Consensus        61 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ss~~v~~~~~~~~~~e~~-----~~~~~~~~~~~k~~~e~  135 (281)
T d1vl0a_          61 AHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEFD-----EVNPQSAYGKTKLEGEN  135 (281)
T ss_dssp             CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTTS-----CCCCCSHHHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccccccccccccccccccceeeeccccccccccc-----cccchhhhhhhhhHHHH
Confidence            9877655666778888999999999999999998899999999999988888888876     77888999999999998


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ++    ++.+.+++++||+++|||+.     ++...++.....+.++.+++  +..++|+|++|+++++..++
T Consensus       136 ~~----~~~~~~~~i~R~~~vyG~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~  197 (281)
T d1vl0a_         136 FV----KALNPKYYIVRTAWLYGDGN-----NFVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVI  197 (281)
T ss_dssp             HH----HHHCSSEEEEEECSEESSSS-----CHHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHH
T ss_pred             HH----HHhCCCccccceeEEeCCCc-----ccccchhhhhccCCceeecC--Cceeccchhhhhhhhhhhhh
Confidence            87    55678999999999999973     37778888888888887766  57899999999999998764

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.8e-27  Score=192.00  Aligned_cols=215  Identities=23%  Similarity=0.307  Sum_probs=153.1

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEee-cccCccc-----cCCcCEEEEccCCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTEPL-----LIEVDQIYHLACPA  108 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~dl~~~~-----~~~~d~vi~~a~~~  108 (259)
                      |||||||||||++|+++|+++|+.+|+++++.......  ....+........ .|+.+..     ...+++++|+|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF--VNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG--HHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchh--hcccccchhhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            89999999999999999999997548888754332211  1111111222221 2222211     56789999999865


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHH
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMF  188 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~  188 (259)
                      .  ....+.......|+.++.+++++++..+++++++||..++.........|+.     +..|.+.|+.+|..+|.+++
T Consensus        80 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~~-----~~~~~~~Y~~~K~~~e~~~~  152 (307)
T d1eq2a_          80 S--TTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESRE-----YEKPLNVYGYSKFLFDEYVR  152 (307)
T ss_dssp             C--TTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSGG-----GCCCSSHHHHHHHHHHHHHH
T ss_pred             c--cccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccchhhhhcc
Confidence            4  3455677788889999999999999999988889988888766555555543     56778899999999999999


Q ss_pred             HHHHHhCCcEEEEEeccccCCCCCCCC--ccHHHHHHHHHHcCCCeEE-ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          189 DYHRQHGIEIRIARIFNTYGPRMNIDD--GRVVSNFIAQAIRGEPLTV-QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       189 ~~~~~~~~~~~~lr~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+.++++++++++|++++|||+.....  ...+..+...+..++...+ .|++...++|+|++|+++++..++
T Consensus       153 ~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~  225 (307)
T d1eq2a_         153 QILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFL  225 (307)
T ss_dssp             HHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHH
T ss_pred             ccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHHHh
Confidence            999999999999999999999864332  3366777777777765444 477788899999999999998654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-27  Score=182.75  Aligned_cols=183  Identities=13%  Similarity=0.101  Sum_probs=141.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      |.++||+||||||+||++++++|+++|++ |+++.|+..+....     ...+++++.+|+.+.+     +.++|+|||+
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~-V~~~~R~~~~~~~~-----~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~   74 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYE-VTVLVRDSSRLPSE-----GPRPAHVVVGDVLQAADVDKTVAGQDAVIVL   74 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCGGGSCSS-----SCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCE-EEEEEcChhhcccc-----cccccccccccccchhhHHHHhcCCCEEEEE
Confidence            67899999999999999999999999998 99999865543321     2357899999999988     7899999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA  183 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~  183 (259)
                      +|.....       .....+..++.+++++++++++ |||++||..++.+...            .......|...|..+
T Consensus        75 ~g~~~~~-------~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~------------~~~~~~~~~~~~~~~  135 (205)
T d1hdoa_          75 LGTRNDL-------SPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK------------VPPRLQAVTDDHIRM  135 (205)
T ss_dssp             CCCTTCC-------SCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC------------SCGGGHHHHHHHHHH
T ss_pred             eccCCch-------hhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcc------------ccccccccchHHHHH
Confidence            9864321       1113567889999999999999 9999999888764322            112234577888888


Q ss_pred             HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       184 e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |+++    ++.+++|+++||+.+++....                 ....+..++.....+|+.+|+|++++.++
T Consensus       136 e~~l----~~~~~~~tiirp~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~~~DvA~~~~~~l  189 (205)
T d1hdoa_         136 HKVL----RESGLKYVAVMPPHIGDQPLT-----------------GAYTVTLDGRGPSRVISKHDLGHFMLRCL  189 (205)
T ss_dssp             HHHH----HHTCSEEEEECCSEEECCCCC-----------------SCCEEESSSCSSCSEEEHHHHHHHHHHTT
T ss_pred             HHHH----HhcCCceEEEecceecCCCCc-----------------ccEEEeeCCCCCCCcCCHHHHHHHHHHHh
Confidence            8776    567899999999999874321                 12344455667788999999999998876

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.94  E-value=6.8e-26  Score=181.98  Aligned_cols=193  Identities=18%  Similarity=0.113  Sum_probs=149.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~~a  105 (259)
                      |||||||||||||++|+++|.++|+. |.+..++ ..                +.+|+++.+       ..++|+|||+|
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~-v~~~~~~-~~----------------~~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNL-IALDVHS-KE----------------FCGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEE-EEECTTC-SS----------------SCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCE-EEEECCC-cc----------------ccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence            78999999999999999999998864 5443332 11                235666654       23689999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHH
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAET  185 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~  185 (259)
                      |.........++...+..|+.++.+++++|++.+.+++++||..+|+.....+.+|++     +..|.+.|+.+|..+|.
T Consensus        63 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~~~~~~~~~~E~~-----~~~p~~~y~~~k~~~e~  137 (298)
T d1n2sa_          63 AHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETD-----ATSPLNVYGKTKLAGEK  137 (298)
T ss_dssp             CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTTS-----CCCCSSHHHHHHHHHHH
T ss_pred             ccccccccccCccccccccccccccchhhhhccccccccccccccccCCCCCCCcccc-----ccCCCchHhhhhhhhhh
Confidence            9877666677888999999999999999999998899999999999888888888886     77888999999999998


Q ss_pred             HHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          186 LMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       186 ~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+...    .....++|++..++..    .......+...+..+..+...+  ....+++|++|+++++..++
T Consensus       138 ~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~i  200 (298)
T d1n2sa_         138 ALQDN----CPKHLIFRTSWVYAGK----GNNFAKTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAI  200 (298)
T ss_dssp             HHHHH----CSSEEEEEECSEECSS----SCCHHHHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHH
T ss_pred             hHHhh----hcccccccccceeecc----CCccchhhhhhhcccceeeccc--ceeecccccchHHHHHHHHH
Confidence            87543    3456777777666432    1224555666666666666654  56789999999999887654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.4e-25  Score=171.90  Aligned_cols=183  Identities=20%  Similarity=0.217  Sum_probs=129.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---cCCcCEEEEccCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---LIEVDQIYHLACP  107 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---~~~~d~vi~~a~~  107 (259)
                      .|+|||||||||||++|+++|+++|+. .|+++.|++....         ++++....|+.+..   ...+|.|||++|.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~---------~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~   72 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH---------PRLDNPVGPLAELLPQLDGSIDTAFCCLGT   72 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC---------TTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc---------ccccccccchhhhhhccccchheeeeeeee
Confidence            479999999999999999999999984 3677766533221         24444444443322   5678999999986


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETL  186 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~  186 (259)
                      ..  ........+.+.|+.++.+++++|++.++ +++++||..++..                  +.+.|..+|...|+.
T Consensus        73 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~------------------~~~~y~~~K~~~E~~  132 (212)
T d2a35a1          73 TI--KEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFYNRVKGELEQA  132 (212)
T ss_dssp             CH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHHHHHHHHHHHH
T ss_pred             ec--cccccccccccchhhhhhhcccccccccccccccccccccccc------------------cccchhHHHHHHhhh
Confidence            53  23445678889999999999999999998 9999999876642                  235699999999988


Q ss_pred             HHHHHHHhCC-cEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          187 MFDYHRQHGI-EIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       187 ~~~~~~~~~~-~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +    ++.++ +++++||+.+||+.....   .. .   . . ..++.....  ..+.+||++|+|++++.++
T Consensus       133 l----~~~~~~~~~I~Rp~~v~G~~~~~~---~~-~---~-~-~~~~~~~~~--~~~~~i~v~DvA~ai~~~~  190 (212)
T d2a35a1         133 L----QEQGWPQLTIARPSLLFGPREEFR---LA-E---I-L-AAPIARILP--GKYHGIEACDLARALWRLA  190 (212)
T ss_dssp             H----TTSCCSEEEEEECCSEESTTSCEE---GG-G---G-T-TCCCC------CHHHHHHHHHHHHHHHHHH
T ss_pred             c----cccccccceeeCCcceeCCccccc---HH-H---H-H-HHHHhhccC--CCCcEEEHHHHHHHHHHHH
Confidence            7    34455 599999999999874321   11 0   0 1 111111111  2345699999999998875

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=8.9e-24  Score=163.76  Aligned_cols=191  Identities=17%  Similarity=0.110  Sum_probs=141.3

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++++|+++||||++.||+++++.|+++|++ |++.+|+....          ..+..+.+|+++++            +
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~~~~~   71 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAP----------KGLFGVEVDVTDSDAVDRAFTAVEEHQ   71 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCC----------TTSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCcchh----------cCceEEEEecCCHHHHHHHHHHHHHhc
Confidence            4578999999999999999999999999999 99999865432          25667899999988            5


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      .++|++||+||.....    ...++++..+++|+.++..+.+.+    ++.+. +||++||.....              
T Consensus        72 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~--------------  137 (237)
T d1uzma1          72 GPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW--------------  137 (237)
T ss_dssp             SSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC----------------
T ss_pred             CCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhcc--------------
Confidence            7899999999976542    233567889999999988887655    44555 999999986543              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        +......|+.+|.+.+.+.+.++.+   +|+++..+.||.+..+....    ......+......++.         .
T Consensus       138 --~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~----~~~~~~~~~~~~~pl~---------R  202 (237)
T d1uzma1         138 --GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA----LDERIQQGALQFIPAK---------R  202 (237)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH----SCHHHHHHHGGGCTTC---------S
T ss_pred             --CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc----cCHHHHHHHHhcCCCC---------C
Confidence              2334467999999999999999876   47999999999987653111    1112222333322222         2


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+|+++++++
T Consensus       203 ~~~pedvA~~v~fL~  217 (237)
T d1uzma1         203 VGTPAEVAGVVSFLA  217 (237)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHh
Confidence            557899999999886

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.90  E-value=1.3e-24  Score=175.46  Aligned_cols=196  Identities=14%  Similarity=0.088  Sum_probs=140.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcch---hhhccCCCceeEeecccCccc-----cCCcCEEEE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~  103 (259)
                      .+||||||||||||++|+++|+++|++ |+++.|+.......   ........+++++.+|+.+.+     +.+++.+++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHP-TYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            468999999999999999999999999 99999875543211   111223467999999999887     678999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHH
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRV  182 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~  182 (259)
                      +++....           ..|.....++++++.+.+. ++++.||..++.....           .+..+...|...|..
T Consensus        82 ~~~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~~-----------~~~~~~~~~~~~~~~  139 (312)
T d1qyda_          82 ALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIME-----------HALQPGSITFIDKRK  139 (312)
T ss_dssp             CCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCC-----------CCCSSTTHHHHHHHH
T ss_pred             hhhhccc-----------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCcc-----------cccchhhhhhHHHHH
Confidence            8875432           2356667788888988877 8888888665543211           133444556555555


Q ss_pred             HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          183 AETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       183 ~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .++    +....+++++++|++.+||+......    ..+.........+.++++++..++|+|++|+|++++.++
T Consensus       140 ~~~----~~~~~~~~~~i~r~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l  207 (312)
T d1qyda_         140 VRR----AIEAASIPYTYVSSNMFAGYFAGSLA----QLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSI  207 (312)
T ss_dssp             HHH----HHHHTTCCBCEEECCEEHHHHTTTSS----CTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHT
T ss_pred             HHH----hhcccccceEEeccceeecCCccchh----hHHHHhhhcccccccccccccccceeeHHHHHHHHHHHh
Confidence            544    45777899999999999996532211    111112234566777889999999999999999998775

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=6.4e-24  Score=165.28  Aligned_cols=198  Identities=17%  Similarity=0.087  Sum_probs=147.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ++++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++.  ..+...+.+|+++++            +.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~-Vv~~~r~~~~l~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAK-VIGTATSENGAQAISDYL--GANGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHh--CCCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            367999999999999999999999999998 999988654333322222  246788999999987            67


Q ss_pred             CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||.....    ...++++..+++|+.++..+++++    ++.+. +||++||.....               
T Consensus        78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~---------------  142 (243)
T d1q7ba_          78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM---------------  142 (243)
T ss_dssp             SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------------
T ss_pred             CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC---------------
Confidence            899999999876542    223567788999999999998876    34455 999999987554               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                       +......|+.+|.+.+.+.+.++.+   +|+++..+.||.+-.+....    ........+....++.         .+
T Consensus       143 -~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~----~~~~~~~~~~~~~pl~---------R~  208 (243)
T d1q7ba_         143 -GNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRA----LSDDQRAGILAQVPAG---------RL  208 (243)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT----SCHHHHHHHHTTCTTS---------SC
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhh----hhhhHHHHHHhcCCCC---------CC
Confidence             3334467999999999999999876   47999999999886653211    1122233333333322         25


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ...+|+|+++++++
T Consensus       209 ~~pedvA~~v~fL~  222 (243)
T d1q7ba_         209 GGAQEIANAVAFLA  222 (243)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            57899999999886

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.90  E-value=1.9e-23  Score=163.39  Aligned_cols=202  Identities=14%  Similarity=0.067  Sum_probs=149.4

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc-----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~-----------   94 (259)
                      .+++++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++... ..++..+.+|+++++           
T Consensus         5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga~-V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   83 (251)
T d2c07a1           5 YYCGENKVALVTGAGRGIGREIAKMLAKSVSH-VICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT   83 (251)
T ss_dssp             CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            35578999999999999999999999999998 99999865433322222211 246889999999987           


Q ss_pred             -cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 -LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       ++++|++||+||......    ..++++..+++|+.++..+.+++    ++.+. +||++||.....            
T Consensus        84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~------------  151 (251)
T d2c07a1          84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT------------  151 (251)
T ss_dssp             HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH------------
T ss_pred             hcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcC------------
Confidence             679999999999765422    23467889999999998888765    44555 999999986554            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          +......|+.+|.+.+.+.+.++.+   +|+++..|.||.+-.+....    ......+......++.        
T Consensus       152 ----~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~----~~~~~~~~~~~~~pl~--------  215 (251)
T d2c07a1         152 ----GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK----ISEQIKKNIISNIPAG--------  215 (251)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---------CCHHHHHHHHTTCTTS--------
T ss_pred             ----CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccc----cCHHHHHHHHhcCCCC--------
Confidence                3334467999999999999999876   47999999999998765322    2234444444444422        


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                       .+...+|+|+++++++
T Consensus       216 -R~~~pedvA~~v~fL~  231 (251)
T d2c07a1         216 -RMGTPEEVANLACFLS  231 (251)
T ss_dssp             -SCBCHHHHHHHHHHHH
T ss_pred             -CCcCHHHHHHHHHHHh
Confidence             2557899999999876

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=4.4e-23  Score=161.26  Aligned_cols=202  Identities=19%  Similarity=0.135  Sum_probs=148.4

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~-----------   94 (259)
                      +++++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..+++..  ..++..+.+|+++++           
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999999998 99999865543333322211  246788999999987           


Q ss_pred             -cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 -LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       ++++|++||+||.....    ...++++..+++|+.++..+.+++.+    .+. ++|++||......           
T Consensus        80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~-----------  148 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV-----------  148 (251)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC-----------
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccc-----------
Confidence             57899999999975442    23356788999999999999887643    344 9999998653221           


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHH--HHHHHHHHcCCCeEEecCCc
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVV--SNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  239 (259)
                          +......|+.+|.+.+.+.+.++.+   +|+++..+.||.+-.+...    ...  +...+......|+..     
T Consensus       149 ----~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~----~~~~~~~~~~~~~~~~pl~R-----  215 (251)
T d1vl8a_         149 ----TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTE----AVFSDPEKLDYMLKRIPLGR-----  215 (251)
T ss_dssp             ----CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTH----HHHTCHHHHHHHHHTCTTSS-----
T ss_pred             ----cCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHH----hccCCHHHHHHHHhcCCCCC-----
Confidence                2233467999999999999999876   4799999999999776521    111  223334444443322     


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                          +..++|+|+++++++
T Consensus       216 ----~~~pedvA~~v~fL~  230 (251)
T d1vl8a_         216 ----TGVPEDLKGVAVFLA  230 (251)
T ss_dssp             ----CBCGGGGHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHHHh
Confidence                446799999999876

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=3.4e-23  Score=162.62  Aligned_cols=204  Identities=17%  Similarity=0.145  Sum_probs=135.0

Q ss_pred             cccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc----------
Q 025022           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        26 ~~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~----------   94 (259)
                      ..+++++|+++||||++.||+++++.|+++|++ |++.+|+.....+..++.. ...++..+.+|+++++          
T Consensus         2 ~~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d1xq1a_           2 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAV-IHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVS   80 (259)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHH
Confidence            456789999999999999999999999999998 9999986544333332221 1347889999999877          


Q ss_pred             --c-CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 --L-IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 --~-~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                        + ..+|++||+||.....    ...++++..+++|+.++..+++++.    +.+. +||++||.....          
T Consensus        81 ~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~----------  150 (259)
T d1xq1a_          81 SMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV----------  150 (259)
T ss_dssp             HHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------------
T ss_pred             HHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccc----------
Confidence              3 4699999999976542    2335678899999999998888663    4454 999999986543          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +......|+.+|.+.+.+.+.++.+   +|+++..|.||.+-.|.....   ......+......|        
T Consensus       151 ------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~---~~~~~~~~~~~~~p--------  213 (259)
T d1xq1a_         151 ------SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV---YDDEFKKVVISRKP--------  213 (259)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC--------------------------------
T ss_pred             ------cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhh---chHHHHHHHHhCCC--------
Confidence                  3334467999999999999999876   479999999998877642110   01111111111112        


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                       ...+...+|+|.++++++
T Consensus       214 -l~R~~~pedvA~~v~fL~  231 (259)
T d1xq1a_         214 -LGRFGEPEEVSSLVAFLC  231 (259)
T ss_dssp             -----CCGGGGHHHHHHHT
T ss_pred             -CCCCcCHHHHHHHHHHHh
Confidence             223567899999999886

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.90  E-value=1e-22  Score=158.90  Aligned_cols=200  Identities=17%  Similarity=0.127  Sum_probs=140.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.....+...+.. ..++..+.+|+++++            +++
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~~-g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLVPAPEAEAAIRNL-GRRVLTVKCDVSQPGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSCCHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHHHHc-CCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999998 8888886543222221111 357889999999988            578


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ...++++..+++|+.++..+.+++    ++.+. ++|++||.....                
T Consensus        81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~----------------  144 (247)
T d2ew8a1          81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL----------------  144 (247)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS----------------
T ss_pred             CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcc----------------
Confidence            99999999976542    233567889999999999988866    44555 999999986543                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +......|+.+|.+.+.+.+.++.+   +|+++..|.||.+..+.....   .............        .....+.
T Consensus       145 ~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~---~~~~~~~~~~~~~--------~~l~r~~  213 (247)
T d2ew8a1         145 KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS---ALSAMFDVLPNML--------QAIPRLQ  213 (247)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC---------------------CTT--------SSSCSCC
T ss_pred             cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCcccccc---ccchhHHHHHHHh--------ccCCCCC
Confidence            3344567999999999999999876   479999999998877642211   1111111111100        1112355


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      ..+|+|+++++++
T Consensus       214 ~pedvA~~v~fL~  226 (247)
T d2ew8a1         214 VPLDLTGAAAFLA  226 (247)
T ss_dssp             CTHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHh
Confidence            7899999999886

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.90  E-value=8.7e-23  Score=159.56  Aligned_cols=162  Identities=19%  Similarity=0.145  Sum_probs=129.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      ++++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..+++  ..++.++.+|+++++            +.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh--CCceEEEEcccCCHHHHHHHHHHHHHHcC
Confidence            467999999999999999999999999999 999998654433333332  246889999999987            57


Q ss_pred             CcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ++|++||+||......    ..++++..+++|+.++..+.+++.    +.+. +||++||...+.               
T Consensus        79 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~---------------  143 (254)
T d1hdca_          79 SVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM---------------  143 (254)
T ss_dssp             CCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS---------------
T ss_pred             CccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcc---------------
Confidence            8999999999765422    234577899999999999888763    4455 999999987543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                       +......|+.+|.+.+.+.+.++.+   +|+++..+.||.+..+
T Consensus       144 -~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~  187 (254)
T d1hdca_         144 -GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP  187 (254)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH
T ss_pred             -cccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc
Confidence             3344568999999999999999876   4799999999988654

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=5.1e-23  Score=159.96  Aligned_cols=192  Identities=17%  Similarity=0.080  Sum_probs=144.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++.  ..+..++.+|+++++            +.+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   80 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDILDEEGKAMAAEL--ADAARYVHLDVTQPAQWKAAVDTAVTAFGG   80 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh--hCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            57899999999999999999999999998 999998654433333332  246788999999987            578


Q ss_pred             cCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||......    ..+++++.+++|+.++..+++.+    ++.+. +||++||...+.                
T Consensus        81 idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~----------------  144 (244)
T d1nffa_          81 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA----------------  144 (244)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------
T ss_pred             CeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccc----------------
Confidence            999999999765422    23457889999999999988765    34444 999999987543                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +......|+.+|++.+.+.+.++.+   +|+++..|.||.+..|.......         ...  .       .....+.
T Consensus       145 ~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~---------~~~--~-------~pl~R~~  206 (244)
T d1nffa_         145 GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPE---------DIF--Q-------TALGRAA  206 (244)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTSCT---------TCS--C-------CSSSSCB
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhhhH---------HHH--h-------ccccCCC
Confidence            3344568999999999999999876   47999999999887754221000         000  0       1122367


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      .++|+|+++++++
T Consensus       207 ~p~diA~~v~fL~  219 (244)
T d1nffa_         207 EPVEVSNLVVYLA  219 (244)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            8999999999886

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=3.8e-23  Score=161.25  Aligned_cols=198  Identities=17%  Similarity=0.086  Sum_probs=141.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+. .+..+.    .+..++++|+++.+            +++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~-V~~~~~~~~~-~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   76 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGAL-VALCDLRPEG-KEVAEA----IGGAFFQVDLEDERERVRFVEEAAYALGR   76 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSTTH-HHHHHH----HTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHH-HHHHHH----cCCeEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence            57899999999999999999999999998 9999886542 222222    24677899999987            678


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ...++++..+++|+.++..+.+++.    +.+. +||++||...+.                
T Consensus        77 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~----------------  140 (248)
T d2d1ya1          77 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF----------------  140 (248)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------
T ss_pred             CCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccc----------------
Confidence            99999999976542    2234577899999999999988774    3444 999999987543                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                      +......|+.+|.+.+.+.+.++.+   +|+++..+.||.+-.|.....  .........+......+         ...
T Consensus       141 ~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p---------l~R  211 (248)
T d2d1ya1         141 AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHA---------LRR  211 (248)
T ss_dssp             BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTST---------TSS
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCC---------CCC
Confidence            3344578999999999999999876   479999999988866431000  00000011111112112         223


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+|.++++++
T Consensus       212 ~~~pedia~~v~fL~  226 (248)
T d2d1ya1         212 LGKPEEVAEAVLFLA  226 (248)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHh
Confidence            567899999999886

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.7e-23  Score=162.02  Aligned_cols=200  Identities=15%  Similarity=0.124  Sum_probs=147.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++... ..++..+.+|+++++            ++
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999 99999865433322222211 246888999999987            57


Q ss_pred             CcCEEEEccCCCCccc---cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           97 EVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      ++|++||+||......   ..++++..+++|+.++..+.+++.    +.+. ++|++||...+.                
T Consensus        88 ~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~----------------  151 (255)
T d1fmca_          88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN----------------  151 (255)
T ss_dssp             SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------
T ss_pred             CCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhc----------------
Confidence            8999999999765422   234577899999999998887653    3455 899999976543                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +......|+.+|.+.+.+.+.++.+   +|+++..|.||.+..+.....   .-+...+...+..++.         .+.
T Consensus       152 ~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~---~~~e~~~~~~~~~pl~---------R~g  219 (255)
T d1fmca_         152 KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV---ITPEIEQKMLQHTPIR---------RLG  219 (255)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT---CCHHHHHHHHHTCSSC---------SCB
T ss_pred             cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhcc---CCHHHHHHHHhcCCCC---------CCc
Confidence            3344568999999999999999876   479999999999876532111   1123334444444332         245


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      .++|+|+++++++
T Consensus       220 ~pedvA~~v~fL~  232 (255)
T d1fmca_         220 QPQDIANAALFLC  232 (255)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            7899999999886

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=2.3e-22  Score=156.25  Aligned_cols=194  Identities=17%  Similarity=0.104  Sum_probs=144.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+.    +++..+..+...+.+|+++++            +++
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~-V~~~~r~~~~----l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   77 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIEEGP----LREAAEAVGAHPVVMDVADPASVERGFAEALAHLGR   77 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHH----HHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHH----HHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            57899999999999999999999999998 9999985433    333222346788999999988            578


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.....    ...++++..+++|+.++..+.+++.+    .+. .++++||....                 
T Consensus        78 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~-----------------  140 (242)
T d1ulsa_          78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYL-----------------  140 (242)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGG-----------------
T ss_pred             ceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecccccc-----------------
Confidence            99999999976542    23355788999999999999887754    233 67777765422                 


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFC  245 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  245 (259)
                      +......|+.+|.+.+.+.+.++.+.   |+++..+.||.+-.+....    ......+......++..         +.
T Consensus       141 ~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~----~~~~~~~~~~~~~pl~R---------~~  207 (242)
T d1ulsa_         141 GNLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK----VPEKVREKAIAATPLGR---------AG  207 (242)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS----SCHHHHHHHHHTCTTCS---------CB
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhc----CCHHHHHHHHhcCCCCC---------CC
Confidence            22344679999999999999998764   7999999999998765332    22333444444444332         44


Q ss_pred             eHHHHHHHHHhhh
Q 025022          246 YVSDMVCKSCFLA  258 (259)
Q Consensus       246 ~v~D~a~~~~~~l  258 (259)
                      ..+|+|+++++++
T Consensus       208 ~pedia~~v~fL~  220 (242)
T d1ulsa_         208 KPLEVAYAALFLL  220 (242)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            7899999999886

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.89  E-value=1.8e-23  Score=167.91  Aligned_cols=191  Identities=15%  Similarity=0.142  Sum_probs=135.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhh----hccCCCceeEeecccCccc-----cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----KWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~dl~~~~-----~~~~d~v  101 (259)
                      +.|||||||||||||++++++|+++|++ |++++|+........+    ......+++++.+|+.+..     +.+++.+
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~-V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v   80 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHP-TFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV   80 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceee
Confidence            3589999999999999999999999999 9999997655332111    1122457889999998887     6789999


Q ss_pred             EEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHH
Q 025022          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGK  180 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK  180 (259)
                      +|+++..               +..+..++++++...++ ++++.||......       +..     ...+...+...+
T Consensus        81 i~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~-------~~~-----~~~~~~~~~~~~  133 (307)
T d1qyca_          81 ISTVGSL---------------QIESQVNIIKAIKEVGTVKRFFPSEFGNDVD-------NVH-----AVEPAKSVFEVK  133 (307)
T ss_dssp             EECCCGG---------------GSGGGHHHHHHHHHHCCCSEEECSCCSSCTT-------SCC-----CCTTHHHHHHHH
T ss_pred             eeccccc---------------ccchhhHHHHHHHHhccccceeeeccccccc-------ccc-----cccccccccccc
Confidence            9988643               34556678889998888 8888777543321       110     122223344444


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          181 RVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       181 ~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ...+    .+..+.+++++++||+++||+....     +..+......+....+++.++..++|+|++|+|++++.++
T Consensus       134 ~~~~----~~~~~~~~~~~i~r~~~v~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l  202 (307)
T d1qyca_         134 AKVR----RAIEAEGIPYTYVSSNCFAGYFLRS-----LAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAV  202 (307)
T ss_dssp             HHHH----HHHHHHTCCBEEEECCEEHHHHTTT-----TTCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTS
T ss_pred             cccc----chhhccCCCceecccceecCCCccc-----hhhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHh
Confidence            4444    4446678999999999999976432     1222333445666777888999999999999999998775

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-22  Score=157.91  Aligned_cols=198  Identities=19%  Similarity=0.132  Sum_probs=146.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~v  101 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++   ..++..+.+|+++++        ++++|++
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~-V~~~~r~~~~l~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~g~iDil   80 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSRTQADLDSLVRE---CPGIEPVCVDLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHh---cCCCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence            67999999999999999999999999998 99999864433322222   246888999999987        6789999


Q ss_pred             EEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH-----hCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          102 YHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR-----VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       102 i~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      ||+||.....    ...++++..+++|+.++..+.+++.+     .+. ++|++||.....                +..
T Consensus        81 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~----------------~~~  144 (244)
T d1pr9a_          81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR----------------AVT  144 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred             EeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc----------------ccc
Confidence            9999976542    22355778999999999888876532     233 999999986543                334


Q ss_pred             CCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHH
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS  248 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  248 (259)
                      ....|+.+|.+.+.+.+.++.+   +++++..|.||.+..+........  ....+......|+.         .+...+
T Consensus       145 ~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~--~~~~~~~~~~~pl~---------R~~~pe  213 (244)
T d1pr9a_         145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSD--PHKAKTMLNRIPLG---------KFAEVE  213 (244)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCS--HHHHHHHHTTCTTC---------SCBCHH
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccC--hHHHHHHHhcCCCC---------CCcCHH
Confidence            4567999999999999999876   479999999999876532111100  12233333333322         256789


Q ss_pred             HHHHHHHhhh
Q 025022          249 DMVCKSCFLA  258 (259)
Q Consensus       249 D~a~~~~~~l  258 (259)
                      |+|+++++++
T Consensus       214 evA~~v~fL~  223 (244)
T d1pr9a_         214 HVVNAILFLL  223 (244)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.89  E-value=7.6e-23  Score=160.69  Aligned_cols=205  Identities=14%  Similarity=0.097  Sum_probs=148.5

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------   94 (259)
                      +++++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++... ..++..+.+|+++++            
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH   82 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            5688999999999999999999999999998 99999865443333333211 346788999999977            


Q ss_pred             cC-CcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 LI-EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~~-~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +. ++|++||+||.....    ...++++..+++|+.++..+.+++.    +.+. +||++||.....            
T Consensus        83 ~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------------  150 (259)
T d2ae2a_          83 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL------------  150 (259)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS------------
T ss_pred             hCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccc------------
Confidence            44 699999999976542    2234577899999999998887764    3444 999999986443            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-CccHHHHHHHHHHcCCCeEEecCCce
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID-DGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                          +......|+.+|.+.+.+.+.++.+   +++++..|.||.+..+..... ................++.       
T Consensus       151 ----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~-------  219 (259)
T d2ae2a_         151 ----AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALR-------  219 (259)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTC-------
T ss_pred             ----ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCC-------
Confidence                3334467999999999999999876   479999999998876531100 0111122333444443332       


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                        .+..++|+|+++++++
T Consensus       220 --R~g~pedvA~~v~fL~  235 (259)
T d2ae2a_         220 --RMGEPKELAAMVAFLC  235 (259)
T ss_dssp             --SCBCHHHHHHHHHHHH
T ss_pred             --CCcCHHHHHHHHHHHh
Confidence              2457899999999886

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.89  E-value=5.8e-23  Score=161.66  Aligned_cols=164  Identities=14%  Similarity=0.055  Sum_probs=128.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---CCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~------------   94 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.....+.....+   ...++.++.+|+++++            
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999998 9999886433332222211   1347889999999988            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                      +.++|++||+||.....    ...++++..+++|+.++..+++++    ++.+. +||++||.....             
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~-------------  147 (260)
T d1x1ta1          81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV-------------  147 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-------------
T ss_pred             hCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee-------------
Confidence            57899999999976542    233557789999999998887765    44555 999999986543             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                         +......|+.+|.+.+.+.+.++.+   +|+++..|.||.+-.|.
T Consensus       148 ---~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~  192 (260)
T d1x1ta1         148 ---ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPL  192 (260)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC--
T ss_pred             ---ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChh
Confidence               3334467999999999999999876   47999999999987764

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.89  E-value=9.6e-23  Score=160.14  Aligned_cols=202  Identities=14%  Similarity=0.061  Sum_probs=145.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------   94 (259)
                      ++++|+++||||++.||+++++.|+++|++ |++.+|+.....+...+.+.  ..++..+.+|+++++            
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~-Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999998 88888864432222222211  246788999999987            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC--eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      ++++|++||+||.....    ...++++..+++|+.++..+.+++.    +.+.  .||++||.....            
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~------------  150 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------  150 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------------
T ss_pred             hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc------------
Confidence            57899999999976542    2335577899999999988887653    3443  688999876443            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          +......|+.+|.+.+.+.+.++.+.   |+++..|.||.+..|.....  ..-+..........++.        
T Consensus       151 ----~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~--~~~~~~~~~~~~~~pl~--------  216 (261)
T d1geea_         151 ----PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEK--FADPEQRADVESMIPMG--------  216 (261)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHH--HHSHHHHHHHHTTCTTS--------
T ss_pred             ----cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhh--cCCHHHHHHHHhcCCCC--------
Confidence                33344679999999999999998764   79999999999877642100  00012223333333322        


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                       -+...+|+|+++++++
T Consensus       217 -R~~~pediA~~v~fL~  232 (261)
T d1geea_         217 -YIGEPEEIAAVAAWLA  232 (261)
T ss_dssp             -SCBCHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHh
Confidence             2457899999999886

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=7.1e-23  Score=159.21  Aligned_cols=198  Identities=19%  Similarity=0.126  Sum_probs=144.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~v  101 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++   ..++..+.+|+++++        ++++|++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~g~iDil   78 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTRTNSDLVSLAKE---CPGIEPVCVDLGDWDATEKALGGIGPVDLL   78 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHh---cCCCeEEEEeCCCHHHHHHHHHHcCCCeEE
Confidence            67999999999999999999999999999 99999864433222222   247888999999988        6789999


Q ss_pred             EEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----h-CC-eEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          102 YHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----V-GA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       102 i~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      ||+||.....    ...++++..+++|+.++..+.+++.+    . .. ++|++||.....                +..
T Consensus        79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~----------------~~~  142 (242)
T d1cyda_          79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV----------------TFP  142 (242)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS----------------CCT
T ss_pred             EECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc----------------cCC
Confidence            9999976542    23345778899999999999876532    2 33 999999986443                334


Q ss_pred             CCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHH
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVS  248 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  248 (259)
                      ....|+.+|.+.+.+.+.++.+   +|+++..+.||.+..|.......  -+.....+....|+.         .+...+
T Consensus       143 ~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~--~~~~~~~~~~~~pl~---------R~~~pe  211 (242)
T d1cyda_         143 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSA--DPEFARKLKERHPLR---------KFAEVE  211 (242)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTC--CHHHHHHHHHHSTTS---------SCBCHH
T ss_pred             ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcC--CHHHHHHHHhcCCCC---------CCcCHH
Confidence            4567999999999999999876   47999999999887653110000  022233333333322         245789


Q ss_pred             HHHHHHHhhh
Q 025022          249 DMVCKSCFLA  258 (259)
Q Consensus       249 D~a~~~~~~l  258 (259)
                      |+|+++++++
T Consensus       212 eva~~v~fL~  221 (242)
T d1cyda_         212 DVVNSILFLL  221 (242)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999886

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.89  E-value=4.4e-22  Score=157.23  Aligned_cols=205  Identities=17%  Similarity=0.149  Sum_probs=146.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..+++.....+.++.+|+++++            +++
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            67899999999999999999999999999 99999865443333333333456888999999987            678


Q ss_pred             cCEEEEccCCCCcc------ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           98 VDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        98 ~d~vi~~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +|++||+||.....      ...++++..+++|+.++..+.+++.    +.+. ++|++||...+..             
T Consensus        83 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~-------------  149 (268)
T d2bgka1          83 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA-------------  149 (268)
T ss_dssp             CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCC-------------
T ss_pred             cceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccc-------------
Confidence            99999999965431      1224577889999999999988764    3444 9999998764431             


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                        .......|+.+|.+.+.+.+.++.+   +|+++..|.||.+-.|.........-............ + .      ..
T Consensus       150 --~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~-~-~------gr  219 (268)
T d2bgka1         150 --GEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAAN-L-K------GT  219 (268)
T ss_dssp             --CTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCS-S-C------SC
T ss_pred             --ccccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccc-c-C------CC
Confidence              1112247999999999999999876   47999999999998876432211111111111111111 1 1      12


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+|+++++++
T Consensus       220 ~~~pedvA~~v~fL~  234 (268)
T d2bgka1         220 LLRAEDVADAVAYLA  234 (268)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHh
Confidence            557899999999886

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.89  E-value=5.3e-23  Score=160.88  Aligned_cols=200  Identities=15%  Similarity=0.092  Sum_probs=144.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..+......++.++.+|+++++            +++
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            57899999999999999999999999999 99999865443333333333457899999999988            678


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC--eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA--RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~--~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      +|++||+||.....    ...++++..+++|+.++..+.+++.+    .+.  ++|++||...+.               
T Consensus        83 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~---------------  147 (251)
T d1zk4a1          83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV---------------  147 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS---------------
T ss_pred             ceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec---------------
Confidence            99999999976542    22345678999999999999887643    332  899999976443               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceee
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR  242 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (259)
                       +......|+.+|.+.+.+.+.++.+     +||++..|.||.+..+.......   ...........+         ..
T Consensus       148 -~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~---~~~~~~~~~~~p---------l~  214 (251)
T d1zk4a1         148 -GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG---AEEAMSQRTKTP---------MG  214 (251)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT---HHHHHTSTTTCT---------TS
T ss_pred             -cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCC---HHHHHHHHhCCC---------CC
Confidence             3334467999999999999988754     47999999999887653211000   111111111111         12


Q ss_pred             eeeeHHHHHHHHHhhh
Q 025022          243 SFCYVSDMVCKSCFLA  258 (259)
Q Consensus       243 ~~i~v~D~a~~~~~~l  258 (259)
                      .+...+|+|+++++++
T Consensus       215 R~~~pedvA~~v~fL~  230 (251)
T d1zk4a1         215 HIGEPNDIAYICVYLA  230 (251)
T ss_dssp             SCBCHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHh
Confidence            3668899999999886

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-22  Score=157.84  Aligned_cols=200  Identities=18%  Similarity=0.176  Sum_probs=144.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+ +.+..  .+..++.+|+++++            +.+
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~-~~~~~--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDKDESGGRA-LEQEL--PGAVFILCDVTQEDDVKTLVSETIRRFGR   79 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHH-HHHHC--TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHH-HHHhc--CCCeEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            57899999999999999999999999998 9999886433222 22222  46889999999987            578


Q ss_pred             cCEEEEccCCCCc-c----ccccChhHHHHHhhhhHHHHHHHHH----HhCCeEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           98 VDQIYHLACPASP-I----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        98 ~d~vi~~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      +|++||+||.... .    ...++++..+++|+.++..+++++.    +.+.++|++||.....                
T Consensus        80 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~----------------  143 (250)
T d1ydea1          80 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI----------------  143 (250)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH----------------
T ss_pred             CCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc----------------
Confidence            9999999996532 1    1234577899999999999888764    3344999999987554                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC--CCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNI--DDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                      +......|+.+|.+.+.+.+.++.+   +++++..|.||.+..|....  ..........+......|+.         .
T Consensus       144 ~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~---------R  214 (250)
T d1ydea1         144 GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLG---------R  214 (250)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTS---------S
T ss_pred             cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCCC---------C
Confidence            3334468999999999999999876   47999999999886542100  00000112223333333322         2


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      +...+|+|+++++++
T Consensus       215 ~g~p~eva~~v~fL~  229 (250)
T d1ydea1         215 MGQPAEVGAAAVFLA  229 (250)
T ss_dssp             CBCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            557899999998875

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.88  E-value=1.4e-22  Score=157.80  Aligned_cols=196  Identities=15%  Similarity=0.036  Sum_probs=143.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------cCCc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------LIEV   98 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------~~~~   98 (259)
                      +.++||||++.||+++++.|+++|++ |++.+++.....+.+.+.+.  ..++..+.+|+++++            ++++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~-V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCK-VLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            47999999999999999999999999 77765433322222222221  247888999999987            6789


Q ss_pred             CEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           99 DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        99 d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      |++||+||.....    ...++++..+++|+.++..+.+++    ++.+. +||++||...+.                +
T Consensus        81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~----------------~  144 (244)
T d1edoa_          81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLI----------------G  144 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH----------------C
T ss_pred             CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcC----------------C
Confidence            9999999976542    233567889999999999988766    34455 999999987554                3


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCY  246 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  246 (259)
                      ......|+.+|.+.+.+.+.++.+.   |+++..+.||.+-.+....    ......+......++.         .+..
T Consensus       145 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~----~~~~~~~~~~~~~pl~---------R~~~  211 (244)
T d1edoa_         145 NIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK----LGEDMEKKILGTIPLG---------RTGQ  211 (244)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT----TCHHHHHHHHTSCTTC---------SCBC
T ss_pred             CCCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHH----hhHHHHHHHHhcCCCC---------CCcC
Confidence            3344679999999999999998774   8999999999886643211    2233344444443332         2457


Q ss_pred             HHHHHHHHHhhh
Q 025022          247 VSDMVCKSCFLA  258 (259)
Q Consensus       247 v~D~a~~~~~~l  258 (259)
                      .+|+|+++.+++
T Consensus       212 p~dvA~~v~fLa  223 (244)
T d1edoa_         212 PENVAGLVEFLA  223 (244)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            899999998874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.88  E-value=3.5e-22  Score=157.04  Aligned_cols=203  Identities=16%  Similarity=0.063  Sum_probs=146.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~   96 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++... ..++..+.+|+++++            ++
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999998 99999865433322222211 246888999999987            67


Q ss_pred             CcCEEEEccCCCCc-----cccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           97 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      ++|++||+||....     +...++++..+++|+.++..+.+++.    +.+. ++|++||...+.              
T Consensus        82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~--------------  147 (260)
T d1zema1          82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK--------------  147 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS--------------
T ss_pred             CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc--------------
Confidence            89999999996532     12234577899999999999888763    3444 999999987554              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC------------CCccHHHHHHHHHHcCCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNI------------DDGRVVSNFIAQAIRGEP  231 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~------------~~~~~~~~~~~~~~~~~~  231 (259)
                        +......|+.+|.+.+.+.+.++.+.   |+++..+.||.+-.+....            ..........+.+....|
T Consensus       148 --~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P  225 (260)
T d1zema1         148 --GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVP  225 (260)
T ss_dssp             --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTST
T ss_pred             --CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCC
Confidence              33344679999999999999998764   7999999999987653100            000011222333333333


Q ss_pred             eEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          232 LTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       232 ~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +.         .+...+|+|.++++++
T Consensus       226 l~---------R~g~pedvA~~v~fL~  243 (260)
T d1zema1         226 MR---------RYGDINEIPGVVAFLL  243 (260)
T ss_dssp             TS---------SCBCGGGSHHHHHHHH
T ss_pred             CC---------CCcCHHHHHHHHHHHh
Confidence            22         2457799999999886

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.88  E-value=2.5e-22  Score=157.50  Aligned_cols=203  Identities=17%  Similarity=0.161  Sum_probs=145.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhh---hccCCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR---KWIGHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~~~dl~~~~------------   94 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.....+..+   ......++..+.+|+++++            
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999998 9999986543222222   1222357888999999988            


Q ss_pred             cCCcCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 LIEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      ++++|++||+||.....     ...++++..+++|+.++..+.+++.    +.+. +||++||...+.            
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------------  148 (258)
T d1iy8a_          81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR------------  148 (258)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS------------
T ss_pred             hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhcc------------
Confidence            57899999999965321     1335578899999999999988763    3344 999999986543            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC----CccHHHHHHHHHHcCCCeEEecC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID----DGRVVSNFIAQAIRGEPLTVQAP  237 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  237 (259)
                          +......|+.+|.+.+.+.+.++.+   +||++..+.||.+..|.....    ................++.    
T Consensus       149 ----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~----  220 (258)
T d1iy8a_         149 ----GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSK----  220 (258)
T ss_dssp             ----BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTC----
T ss_pred             ----CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCC----
Confidence                3334578999999999999999876   479999999998876531000    0001112222333333322    


Q ss_pred             CceeeeeeeHHHHHHHHHhhh
Q 025022          238 GTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       238 ~~~~~~~i~v~D~a~~~~~~l  258 (259)
                           .+...+|+|.++++++
T Consensus       221 -----R~~~p~dvA~~v~fL~  236 (258)
T d1iy8a_         221 -----RYGEAPEIAAVVAFLL  236 (258)
T ss_dssp             -----SCBCHHHHHHHHHHHT
T ss_pred             -----CCcCHHHHHHHHHHHh
Confidence                 2557899999999886

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.88  E-value=4.8e-22  Score=155.90  Aligned_cols=205  Identities=15%  Similarity=0.109  Sum_probs=146.4

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------   94 (259)
                      +++++|+++||||++.||++++++|+++|++ |++.+|+.....+..+... ....+.++.+|+++.+            
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~-V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999998 9999986543332222221 1356778899999988            


Q ss_pred             c-CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 L-IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~-~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      + ..+|++||+||.....    ...+++...+++|+.++..+.+++.    +.+. ++|++||.....            
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~------------  148 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS------------  148 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS------------
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc------------
Confidence            3 4699999999976542    2334678899999999998887664    3445 999999987544            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCc
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                          +......|+.+|.+.+.+.+.++.+.   +|++..|.||.+..+.....  ...........+....++.      
T Consensus       149 ----~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg------  218 (258)
T d1ae1a_         149 ----ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMG------  218 (258)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTC------
T ss_pred             ----ccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCCC------
Confidence                33445689999999999999998764   79999999999987642211  0001123333333333321      


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                         .+...+|+|+++++++
T Consensus       219 ---R~~~pediA~~v~fL~  234 (258)
T d1ae1a_         219 ---RAGKPQEVSALIAFLC  234 (258)
T ss_dssp             ---SCBCHHHHHHHHHHHH
T ss_pred             ---CCcCHHHHHHHHHHHh
Confidence               2568899999999886

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.88  E-value=4e-22  Score=156.32  Aligned_cols=162  Identities=19%  Similarity=0.150  Sum_probs=128.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++.  ..++..+.+|+++++            +.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   79 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGAR-VAIADINLEAARATAAEI--GPAACAIALDVTDQASIDRCVAELLDRWGS   79 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEE-EEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh--CCceEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            56899999999999999999999999998 999998654433333333  357889999999988            578


Q ss_pred             cCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhC-C-eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      +|++||+||......    ..++++..+++|+.++..+.+++.    +.+ . +||++||.....               
T Consensus        80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~---------------  144 (256)
T d1k2wa_          80 IDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR---------------  144 (256)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS---------------
T ss_pred             ccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc---------------
Confidence            999999999765422    234577899999999998887643    223 3 999999986543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                       +......|+.+|.+.+.+.+.++.+   +||++..|.||.+-.|.
T Consensus       145 -~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~  189 (256)
T d1k2wa_         145 -GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEH  189 (256)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTT
T ss_pred             -ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchh
Confidence             3344568999999999999999876   47999999999888764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.88  E-value=3.1e-22  Score=157.18  Aligned_cols=202  Identities=15%  Similarity=0.072  Sum_probs=146.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~~   97 (259)
                      ++|++|||||++.||+++++.|+++|++ |++.+|+.+...+..+++.. ..++..+.+|+++++            +.+
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLR-VFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            4789999999999999999999999999 99999865433322222211 246888999999988            678


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH------hCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR------VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~------~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +|++|||||.....    ...++++..+++|+.++..+++++.+      .+. ++|++||...+.              
T Consensus        80 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~--------------  145 (257)
T d2rhca1          80 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ--------------  145 (257)
T ss_dssp             CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS--------------
T ss_pred             CCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc--------------
Confidence            99999999976542    23345788999999999999998743      344 899999876543              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC-------CccHHHHHHHHHHcCCCeEEec
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNID-------DGRVVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  236 (259)
                        +......|+.+|.+.+.+.+.++.+.   |+++..+.||.+-.|.....       .........+.+....|+.   
T Consensus       146 --~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Plg---  220 (257)
T d2rhca1         146 --GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIG---  220 (257)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTS---
T ss_pred             --ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCC---
Confidence              33444679999999999999999874   69999999998865421000       0001122233333333322   


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                            -+...+|+|+++++++
T Consensus       221 ------R~~~pedia~~v~fL~  236 (257)
T d2rhca1         221 ------RYVQPSEVAEMVAYLI  236 (257)
T ss_dssp             ------SCBCHHHHHHHHHHHT
T ss_pred             ------CCcCHHHHHHHHHHHh
Confidence                  2557899999999886

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.9e-21  Score=150.49  Aligned_cols=191  Identities=16%  Similarity=0.164  Sum_probs=141.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~  103 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.    +.+++    ...+++.+|+.+..      ++++|++||
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~-V~~~~r~~----~~l~~----~~~~~~~~Dv~~~~~~~~~~~g~iD~lVn   72 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNE----ELLKR----SGHRYVVCDLRKDLDLLFEKVKEVDILVL   72 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCH----HHHHH----TCSEEEECCTTTCHHHHHHHSCCCSEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCH----HHHHh----cCCcEEEcchHHHHHHHHHHhCCCcEEEe
Confidence            57899999999999999999999999998 99998843    33333    25567889998754      789999999


Q ss_pred             ccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCC
Q 025022          104 LACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS  174 (259)
Q Consensus       104 ~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (259)
                      +||......    ..++++..+++|+.++..+++++    ++.+. ++|++||.....                +.....
T Consensus        73 nAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~----------------~~~~~~  136 (234)
T d1o5ia_          73 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS----------------PIENLY  136 (234)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS----------------CCTTBH
T ss_pred             cccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccc----------------cccccc
Confidence            999654422    23456788999999988887766    44555 999999976443                444556


Q ss_pred             chHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHH-HHHHHHHHcCCCeEEecCCceeeeeeeHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVV-SNFIAQAIRGEPLTVQAPGTQTRSFCYVSDM  250 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  250 (259)
                      .|..+|.+.+.+.+.++.+.   |+++..+.||.+-.+....    .. ....+......++.         .+...+|+
T Consensus       137 ~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~----~~~~~~~~~~~~~~pl~---------R~~~pedi  203 (234)
T d1o5ia_         137 TSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE----LLSEEKKKQVESQIPMR---------RMAKPEEI  203 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH----HSCHHHHHHHHTTSTTS---------SCBCHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhh----hcCHHHHHHHHhcCCCC---------CCcCHHHH
Confidence            89999999999999998764   7999999999887765211    11 12222333333322         25578999


Q ss_pred             HHHHHhhh
Q 025022          251 VCKSCFLA  258 (259)
Q Consensus       251 a~~~~~~l  258 (259)
                      |+++++++
T Consensus       204 A~~v~fL~  211 (234)
T d1o5ia_         204 ASVVAFLC  211 (234)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999886

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.87  E-value=1.4e-22  Score=158.58  Aligned_cols=202  Identities=18%  Similarity=0.132  Sum_probs=142.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++.  ..+..++.+|+++++            +.+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   80 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHh--CCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            67899999999999999999999999999 999998654333333332  246788999999987            678


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      +|++||+||.....    ...++++..+++|+.++..+++++.+    .+.+||++||.....                +
T Consensus        81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~----------------~  144 (253)
T d1hxha_          81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL----------------P  144 (253)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------C
T ss_pred             CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc----------------C
Confidence            99999999976542    22345788999999999988887643    233999999986543                3


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      ......|+.+|.+.+.+.+.++.+     +++++..+.||.+..+.......   ....+.......     .....-.+
T Consensus       145 ~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~---~~~~~~~~~~~~-----~~~~~gr~  216 (253)
T d1hxha_         145 IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLP---KGVSKEMVLHDP-----KLNRAGRA  216 (253)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSC---TTCCHHHHBCBT-----TTBTTCCE
T ss_pred             ccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCc---chhhHHHHHhCc-----cccccCCC
Confidence            344568999999999999988754     25999999999887642100000   000011111110     00111246


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ...+|+|+++++++
T Consensus       217 ~~pedvA~~v~fL~  230 (253)
T d1hxha_         217 YMPERIAQLVLFLA  230 (253)
T ss_dssp             ECHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            78899999999886

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=2.8e-21  Score=150.28  Aligned_cols=194  Identities=15%  Similarity=0.056  Sum_probs=130.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      ++++|||||||||||+++++.|+++|+. .|+.+.|+..    .....  ..+++++.+|+.+.+     +.++|+|||+
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~----~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~   75 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ----GKEKI--GGEADVFIGDITDADSINPAFQGIDALVIL   75 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH----HHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH----HHHhc--cCCcEEEEeeeccccccccccccceeeEEE
Confidence            4689999999999999999999999976 3555666432    22222  247889999999887     6789999999


Q ss_pred             cCCCCccc-------------cccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022          105 ACPASPIF-------------YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus       105 a~~~~~~~-------------~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      ++......             ..........+|+.++.+++..+..... .+.+.|+...+.....           ...
T Consensus        76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-----------~~~  144 (252)
T d2q46a1          76 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHP-----------LNK  144 (252)
T ss_dssp             CCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCG-----------GGG
T ss_pred             EeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcc-----------ccc
Confidence            98654211             1123455677899999999999998888 8888887654431100           011


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDM  250 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  250 (259)
                      .....|...+..    ...+....+++++++||+++|||......          ...+.....   .....+++|++|+
T Consensus       145 ~~~~~~~~~~~~----~~~~~~~~~~~~~ilRp~~v~g~~~~~~~----------~~~~~~~~~---~~~~~~~i~~~Dv  207 (252)
T d2q46a1         145 LGNGNILVWKRK----AEQYLADSGTPYTIIRAGGLLDKEGGVRE----------LLVGKDDEL---LQTDTKTVPRADV  207 (252)
T ss_dssp             GGGCCHHHHHHH----HHHHHHHSSSCEEEEEECEEECSCTTSSC----------EEEESTTGG---GGSSCCEEEHHHH
T ss_pred             ccccchhhhhhh----hhhhhhcccccceeecceEEECCCcchhh----------hhhccCccc---ccCCCCeEEHHHH
Confidence            112234444433    34445677999999999999998743211          000111111   1334679999999


Q ss_pred             HHHHHhhh
Q 025022          251 VCKSCFLA  258 (259)
Q Consensus       251 a~~~~~~l  258 (259)
                      |++++.++
T Consensus       208 a~a~~~~l  215 (252)
T d2q46a1         208 AEVCIQAL  215 (252)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998876

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=8e-22  Score=154.89  Aligned_cols=203  Identities=13%  Similarity=0.012  Sum_probs=141.2

Q ss_pred             cccCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----------   94 (259)
                      .++++|+++||||+|  .||++++++|+++|++ |++.+|++.......+..........+.+|+++++           
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE   82 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCE-EEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHH
Confidence            467899999999998  7999999999999998 88888764332221111112346778999999987           


Q ss_pred             -cCCcCEEEEccCCCCc--------cccccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                       +.++|++||+||....        +....++...+++|+.++..+++++...-   .++|++||.....          
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~----------  152 (256)
T d1ulua_          83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK----------  152 (256)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS----------
T ss_pred             hcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC----------
Confidence             5789999999986532        11223456688999999999998876532   2899999976543          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +......|+.+|.+.+.+.+.++.+   +|+++..+.||.+..+......  ......+...+..|+.      
T Consensus       153 ------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~--~~~~~~~~~~~~~pl~------  218 (256)
T d1ulua_         153 ------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP--GFTKMYDRVAQTAPLR------  218 (256)
T ss_dssp             ------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------CHHHHHHHHHHSTTS------
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchh--hhHHHHHHHHhcCCCC------
Confidence                  3344567999999999999999876   4799999999998776532211  1123333333333322      


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                         .+...+|+|+++++++
T Consensus       219 ---R~~~pedvA~~v~fL~  234 (256)
T d1ulua_         219 ---RNITQEEVGNLGLFLL  234 (256)
T ss_dssp             ---SCCCHHHHHHHHHHHH
T ss_pred             ---CCcCHHHHHHHHHHHh
Confidence               2457899999999886

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.6e-22  Score=157.73  Aligned_cols=202  Identities=16%  Similarity=0.145  Sum_probs=143.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---c---CCCceeEeecccCccc---------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---I---GHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~~~dl~~~~---------   94 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..+++   .   ...++..+.+|+++++         
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~-Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            68999999999999999999999999998 999998654333222221   1   1347888999999988         


Q ss_pred             ---cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                         ++++|++||+||.....    ...++++..+++|+.++..+++++.+    .+. ++|++|+....           
T Consensus        89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~-----------  157 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA-----------  157 (297)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT-----------
T ss_pred             HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc-----------
Confidence               57899999999865432    22345778999999999999887743    333 78877664321           


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            .......|+.+|.+.+.+.+.++.+.   ||++..|.||.+..+.........-..+........++       
T Consensus       158 ------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~pl-------  224 (297)
T d1yxma1         158 ------GFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPA-------  224 (297)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTT-------
T ss_pred             ------cccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCC-------
Confidence                  22334679999999999999998764   79999999999987653221111111222222222221       


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                        ..+...+|+|.++++++
T Consensus       225 --gR~g~pedvA~~v~fL~  241 (297)
T d1yxma1         225 --KRIGVPEEVSSVVCFLL  241 (297)
T ss_dssp             --SSCBCTHHHHHHHHHHH
T ss_pred             --CCCcCHHHHHHHHHHHh
Confidence              12557899999999886

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.87  E-value=2e-21  Score=153.15  Aligned_cols=203  Identities=14%  Similarity=0.052  Sum_probs=137.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc----cCCCceeEeecccCccc-----------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW----IGHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~dl~~~~-----------   94 (259)
                      +++|+++||||++.||++++++|+++|++ |++.+|+.+...+..++.    ....++..+.+|+++++           
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAK-VTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999998 999998654333222221    12246889999999988           


Q ss_pred             -cCCcCEEEEccCCCCcc--------ccccChhHHHHHhhhhHHHHHHHHH----HhCCeEEEEecce-eecCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSE-VYGDPLVHPQD  160 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~~Ss~~-~~~~~~~~~~~  160 (259)
                       +.++|++||+||.....        ...++++..+++|+.++..+.+++.    +.+..+|+++|.. ...        
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~--------  153 (264)
T d1spxa_          82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH--------  153 (264)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS--------
T ss_pred             HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccc--------
Confidence             57899999999964321        1224577889999999988887764    3344666666543 222        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-----CccHHHHHHHHHHcCCCe
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID-----DGRVVSNFIAQAIRGEPL  232 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~-----~~~~~~~~~~~~~~~~~~  232 (259)
                              +......|+.+|.+.+.+.+.++.+   +|+++..|.||.+-.+.....     ................|+
T Consensus       154 --------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl  225 (264)
T d1spxa_         154 --------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPA  225 (264)
T ss_dssp             --------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTT
T ss_pred             --------cCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCC
Confidence                    3333467999999999999999876   479999999999876542211     000111122222222222


Q ss_pred             EEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          233 TVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       233 ~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .         .+...+|+|+++++++
T Consensus       226 ~---------R~g~pedvA~~v~fL~  242 (264)
T d1spxa_         226 G---------VMGQPQDIAEVIAFLA  242 (264)
T ss_dssp             S---------SCBCHHHHHHHHHHHH
T ss_pred             C---------CCcCHHHHHHHHHHHh
Confidence            2         2457899999999876

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.86  E-value=1.5e-21  Score=154.50  Aligned_cols=205  Identities=14%  Similarity=0.046  Sum_probs=141.5

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc----CCCceeEeecccCccc-----------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~dl~~~~-----------   94 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++..    ...++..+.+|+++++           
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999998 9999986543222222211    1246889999999987           


Q ss_pred             -cCCcCEEEEccCCCCccc------cccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                       ++++|++||+||......      ..++++..+++|+.++..+.+++.+    .+. +++++||.....          
T Consensus        81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~----------  150 (274)
T d1xhla_          81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ----------  150 (274)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS----------
T ss_pred             HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccc----------
Confidence             578999999998643211      1234678899999999988877643    344 788888765332          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC--CccHHHHHHHHHHc-CCCeEEec
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIR-GEPLTVQA  236 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~  236 (259)
                            +......|+.+|.+.+.+.+.++.+   +||++..+.||.+-.|.....  ....-......... ...+++  
T Consensus       151 ------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPl--  222 (274)
T d1xhla_         151 ------AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPV--  222 (274)
T ss_dssp             ------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT--
T ss_pred             ------cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCC--
Confidence                  3334467999999999999998876   489999999999976531110  00011111111111 111111  


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                           .-+...+|+|+++++++
T Consensus       223 -----gR~g~pediA~~v~fL~  239 (274)
T d1xhla_         223 -----GHCGKPEEIANIIVFLA  239 (274)
T ss_dssp             -----SSCBCHHHHHHHHHHHH
T ss_pred             -----CCCcCHHHHHHHHHHHc
Confidence                 12457899999999886

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.86  E-value=4.5e-21  Score=150.23  Aligned_cols=160  Identities=19%  Similarity=0.077  Sum_probs=123.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc------------cCCcC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LIEVD   99 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~------------~~~~d   99 (259)
                      |.++||||++.||+++++.|+++|++ |++.+|+.+...+..+++.. ..++..+.+|+++++            ++++|
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFA-VAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            45799999999999999999999998 99999865433322222211 247888999999988            67899


Q ss_pred             EEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHH----HhCC--eEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022          100 QIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus       100 ~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      ++||+||.....    ...++++..+++|+.++..+++++.    +.+.  ++|++||...+.                +
T Consensus        81 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~----------------~  144 (255)
T d1gega_          81 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV----------------G  144 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------C
T ss_pred             EEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc----------------c
Confidence            999999976542    2234577899999999999887753    3333  899999876543                3


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                      ......|+.+|.+.+.+.+.++.+   +|+++..+.||.+-.|
T Consensus       145 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~  187 (255)
T d1gega_         145 NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTP  187 (255)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSH
T ss_pred             CcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccCh
Confidence            344567999999999999999876   4799999999988654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.86  E-value=6.9e-22  Score=153.53  Aligned_cols=196  Identities=18%  Similarity=0.126  Sum_probs=143.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||.++++.|+++|++ |++.+|+.+...+..++.  ..++.++++|+++++            +++
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~-V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~   79 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGAS-LVAVDREERLLAEAVAAL--EAEAIAVVADVSDPKAVEAVFAEALEEFGR   79 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHTC--CSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHc--CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            56899999999999999999999999998 999998765444333333  246788999999988            578


Q ss_pred             cCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHhCC---eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus        98 ~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      +|++||+||.....    ...++++..+++|+.++..+.+++.+.-.   .++++||.+..                 +.
T Consensus        80 iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~-----------------~~  142 (241)
T d2a4ka1          80 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-----------------GA  142 (241)
T ss_dssp             CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-----------------CH
T ss_pred             ccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccc-----------------cc
Confidence            99999999866542    22345678899999999999998866533   44444443211                 22


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      .....|+.+|.+.|.+.+.++++.   |+++..+.||.+-.+....    ......+......++..         +...
T Consensus       143 ~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~----~~~~~~~~~~~~~p~~r---------~~~p  209 (241)
T d2a4ka1         143 FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG----LPPWAWEQEVGASPLGR---------AGRP  209 (241)
T ss_dssp             HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT----SCHHHHHHHHHTSTTCS---------CBCH
T ss_pred             cCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHh----hhHhHHHHHHhCCCCCC---------CcCH
Confidence            234679999999999999998875   6999999999986654221    22334444444444322         4578


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|+|+++++++
T Consensus       210 ~dva~~v~fL~  220 (241)
T d2a4ka1         210 EEVAQAALFLL  220 (241)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999886

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.86  E-value=2.1e-21  Score=152.65  Aligned_cols=207  Identities=16%  Similarity=0.103  Sum_probs=146.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------   94 (259)
                      +.++|+++||||++.||.++++.|+++|++ |++.+|+.....+..++...  ..++..+.+|+++++            
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD   84 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999999999998 99999976654443333211  356888999999988            


Q ss_pred             cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHH----hC-C-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +.++|++||+||.....    ...++++..+++|+.++..+.+++.+    .+ . .++..||..........       
T Consensus        85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~-------  157 (260)
T d1h5qa_          85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS-------  157 (260)
T ss_dssp             SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE-------
T ss_pred             hCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccc-------
Confidence            67899999999976542    23345778999999999888776532    33 3 66666665433211000       


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                        .........|+.+|.+.+.+.+.++.+   +|+++..|.||.+-.+....    ......+......|+..       
T Consensus       158 --~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~----~~~~~~~~~~~~~pl~R-------  224 (260)
T d1h5qa_         158 --LNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAH----MDKKIRDHQASNIPLNR-------  224 (260)
T ss_dssp             --TTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG----SCHHHHHHHHHTCTTSS-------
T ss_pred             --cccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhc----cCHHHHHHHHhcCCCCC-------
Confidence              001223467999999999999999875   47999999999987664322    22333444444443322       


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                        +...+|+|+++++++
T Consensus       225 --~g~pedvA~~v~fL~  239 (260)
T d1h5qa_         225 --FAQPEEMTGQAILLL  239 (260)
T ss_dssp             --CBCGGGGHHHHHHHH
T ss_pred             --CcCHHHHHHHHHHHh
Confidence              456799999999876

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.6e-21  Score=150.27  Aligned_cols=204  Identities=14%  Similarity=-0.004  Sum_probs=141.4

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc---------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~---------   94 (259)
                      +..+++|++|||||++.||.++++.|+++|++ |++.+|+.....+..+++   ....++..+.+|+++++         
T Consensus         5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~-Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~   83 (257)
T d1xg5a_           5 MERWRDRLALVTGASGGIGAAVARALVQQGLK-VVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI   83 (257)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHH
Confidence            34467899999999999999999999999998 888888654333222222   12347888999999988         


Q ss_pred             ---cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhC--C-eEEEEecceeecCCCCCCCC
Q 025022           95 ---LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVG--A-RILLTSTSEVYGDPLVHPQD  160 (259)
Q Consensus        95 ---~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~--~-~~i~~Ss~~~~~~~~~~~~~  160 (259)
                         ++++|++||+||.....    ...++++..+++|+.++..+.+.+    ++.+  . ++|++||...+...      
T Consensus        84 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------  157 (257)
T d1xg5a_          84 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------  157 (257)
T ss_dssp             HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC------
T ss_pred             HHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC------
Confidence               67899999999976542    234567889999999988887665    3333  2 99999998754310      


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEe
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQ  235 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (259)
                              |......|+.+|.+.+.+.+.++.+     +++++..+.||.+-.+..........    .......     
T Consensus       158 --------p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~----~~~~~~~-----  220 (257)
T d1xg5a_         158 --------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDP----EKAAATY-----  220 (257)
T ss_dssp             --------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCH----HHHHHHH-----
T ss_pred             --------CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhH----HHHHhcC-----
Confidence                    2333456999999999999988754     47999999998765432100000011    1111111     


Q ss_pred             cCCceeeeeeeHHHHHHHHHhhh
Q 025022          236 APGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       236 ~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                          ....++..+|+|+++++++
T Consensus       221 ----~~~r~~~pedvA~~v~fL~  239 (257)
T d1xg5a_         221 ----EQMKCLKPEDVAEAVIYVL  239 (257)
T ss_dssp             ----C---CBCHHHHHHHHHHHH
T ss_pred             ----CCCCCcCHHHHHHHHHHHh
Confidence                1223568899999998875

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.85  E-value=8.4e-21  Score=150.09  Aligned_cols=205  Identities=16%  Similarity=0.074  Sum_probs=139.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc----CCCceeEeecccCccc-----------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~dl~~~~-----------   94 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++..    ...++..+.+|+++++           
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~-V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGAN-VTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            57899999999999999999999999998 9999986543332222221    1246889999999988           


Q ss_pred             -cCCcCEEEEccCCCCcccc--------ccChhHHHHHhhhhHHHHHHHHHH----hCCeEEEEecc-eeecCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASPIFY--------KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTS-EVYGDPLVHPQD  160 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~~--------~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~~Ss~-~~~~~~~~~~~~  160 (259)
                       ++++|++||+||.......        ..+++..+++|+.++..+++++.+    .+..+|+++|. ....        
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~--------  153 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQ--------  153 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSS--------
T ss_pred             HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhcccc--------
Confidence             5789999999997653211        123677889999999999887643    33455555553 3222        


Q ss_pred             CCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC--CccHHHHHHHHHH-cCCCeEE
Q 025022          161 ESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAI-RGEPLTV  234 (259)
Q Consensus       161 e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~-~~~~~~~  234 (259)
                              +......|+.+|.+.+.+.+.++.+   +|+++..|.||.+-.+.....  ............. ....+++
T Consensus       154 --------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl  225 (272)
T d1xkqa_         154 --------AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPI  225 (272)
T ss_dssp             --------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT
T ss_pred             --------CCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCCC
Confidence                    3334467999999999999999876   479999999998876532110  0011111111111 1111111


Q ss_pred             ecCCceeeeeeeHHHHHHHHHhhh
Q 025022          235 QAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       235 ~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                             .-+...+|+|+++++++
T Consensus       226 -------gR~g~pediA~~v~fL~  242 (272)
T d1xkqa_         226 -------GAAGKPEHIANIILFLA  242 (272)
T ss_dssp             -------SSCBCHHHHHHHHHHHH
T ss_pred             -------CCCcCHHHHHHHHHHHh
Confidence                   12557899999999886

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.85  E-value=6.9e-21  Score=149.61  Aligned_cols=203  Identities=16%  Similarity=0.089  Sum_probs=142.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~------------~   95 (259)
                      +.+|++|||||++.||.++++.|+++|++ |++..++.....+.....+.  ..++..+.+|+++++            +
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            67999999999999999999999999999 77765543333333222221  246888999999977            5


Q ss_pred             CCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHhCC---eEEEEecce-eecCCCCCCCCCCCcCCC
Q 025022           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSE-VYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~~Ss~~-~~~~~~~~~~~e~~~~~~  167 (259)
                      .++|++||+||.....    ...+.++..+++|+.++..+++.+.+.-.   +++.++|.. .+.               
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~---------------  147 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT---------------  147 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC---------------
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc---------------
Confidence            6899999999976542    23345778999999999999988865422   666665543 222               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC---------CCCCccHHHHHHHHHHcCCCeEEe
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM---------NIDDGRVVSNFIAQAIRGEPLTVQ  235 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  235 (259)
                       +......|+.+|.+.+.+.+.++.+   +++++..|.||.+-.+..         ..........+...+....++.  
T Consensus       148 -~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~--  224 (259)
T d1ja9a_         148 -GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLK--  224 (259)
T ss_dssp             -SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTS--
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCC--
Confidence             2334467999999999999999876   479999999998864310         0001112233334444444432  


Q ss_pred             cCCceeeeeeeHHHHHHHHHhhh
Q 025022          236 APGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       236 ~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                             .+...+|+|+++++++
T Consensus       225 -------R~g~p~eVa~~v~fL~  240 (259)
T d1ja9a_         225 -------RIGYPADIGRAVSALC  240 (259)
T ss_dssp             -------SCBCHHHHHHHHHHHH
T ss_pred             -------CCcCHHHHHHHHHHHh
Confidence                   2457899999999886

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.85  E-value=8.2e-21  Score=150.40  Aligned_cols=201  Identities=15%  Similarity=0.072  Sum_probs=141.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~   97 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..++.  ..++..+.+|+++.+            +.+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~l~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAK-VAVLDKSAERLAELETDH--GDNVLGIVGDVRSLEDQKQAASRCVARFGK   79 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHc--CCCeeEEecccccHHHHHHHHHHHHHHhCC
Confidence            57899999999999999999999999998 999998644333322222  246889999999987            678


Q ss_pred             cCEEEEccCCCCccc-----cc----cChhHHHHHhhhhHHHHHHHHH----HhCCeEEEEecceeecCCCCCCCCCCCc
Q 025022           98 VDQIYHLACPASPIF-----YK----YNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        98 ~d~vi~~a~~~~~~~-----~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                      +|++||+||......     ..    ..++..+++|+.++..+++++.    +.+.++|++||...+.            
T Consensus        80 idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~------------  147 (276)
T d1bdba_          80 IDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFY------------  147 (276)
T ss_dssp             CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS------------
T ss_pred             cccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhcc------------
Confidence            999999999653211     11    1367889999999988887763    4445888888875432            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcc------HHHHHHHHHHcCCCeEEec
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQH--GIEIRIARIFNTYGPRMNIDDGR------VVSNFIAQAIRGEPLTVQA  236 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~lr~~~v~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  236 (259)
                          +......|+.+|.+.+.+.+.++.+.  ++++..|.||.+-.+...+....      ....+.+.+....|+..  
T Consensus       148 ----~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR--  221 (276)
T d1bdba_         148 ----PNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGR--  221 (276)
T ss_dssp             ----TTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTSS--
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCCC--
Confidence                22334679999999999999998765  48999999999876532211100      01112223333333222  


Q ss_pred             CCceeeeeeeHHHHHHHHHhhh
Q 025022          237 PGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       237 ~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                             +...+|+|+++++++
T Consensus       222 -------~g~peeva~~v~fL~  236 (276)
T d1bdba_         222 -------MPEVEEYTGAYVFFA  236 (276)
T ss_dssp             -------CCCGGGGSHHHHHHH
T ss_pred             -------CcCHHHHHHHHHHHc
Confidence                   446799999998875

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.85  E-value=9e-21  Score=147.02  Aligned_cols=188  Identities=13%  Similarity=0.067  Sum_probs=137.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC------eEEEEcCCCCCCcchhhhccC-CCceeEeecccCccc-----------
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~------~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~dl~~~~-----------   94 (259)
                      +.|+||||++.||+++++.|+++|++      .|+...|+.....+..++... ..++..+.+|+++.+           
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            35899999999999999999999986      367777754332222222211 246788999999988           


Q ss_pred             -cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 -LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       ++++|++||+||.....    ...++++..+++|+.++..+++++    ++.+. ++|++||...+.            
T Consensus        82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~------------  149 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK------------  149 (240)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS------------
T ss_pred             HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC------------
Confidence             67899999999976542    233567889999999999988776    34455 999999987554            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCcee
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQT  241 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (259)
                          +......|+.+|.+.+.+.+.++.+   +|+++..+.||.+-.+.......                      ...
T Consensus       150 ----~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~~----------------------~~~  203 (240)
T d2bd0a1         150 ----AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD----------------------EMQ  203 (240)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS----------------------TTG
T ss_pred             ----CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcCH----------------------hhH
Confidence                3344568999999999999998876   47999999999987764221000                      001


Q ss_pred             eeeeeHHHHHHHHHhhh
Q 025022          242 RSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       242 ~~~i~v~D~a~~~~~~l  258 (259)
                      ..+...+|+|+++++++
T Consensus       204 ~~~~~PedvA~~v~~l~  220 (240)
T d2bd0a1         204 ALMMMPEDIAAPVVQAY  220 (240)
T ss_dssp             GGSBCHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHH
Confidence            12456799999998876

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9e-21  Score=147.52  Aligned_cols=200  Identities=15%  Similarity=0.079  Sum_probs=144.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------cCCcCEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------~~~~d~v  101 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+|+++    .+++..+..++....+|+.+.+        ..++|++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~-Vi~~~r~~~----~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~l   78 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAK-VIATDINES----KLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVL   78 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESCHH----HHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCHH----HHHHHHhccCCceeeeeccccccccccccccccceeE
Confidence            57899999999999999999999999998 999998543    3333333457788888887766        6789999


Q ss_pred             EEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCC
Q 025022          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGV  172 (259)
Q Consensus       102 i~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~  172 (259)
                      ||+||......    ..++++..+++|+.++..+.+++.    +.+. ++|++||....-               .+...
T Consensus        79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~---------------~~~~~  143 (245)
T d2ag5a1          79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV---------------KGVVN  143 (245)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT---------------BCCTT
T ss_pred             EecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhcc---------------CCccc
Confidence            99999776522    234577899999999999987764    3444 999999864211               03345


Q ss_pred             CCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC--CccHHHHHHHHHHcCCCeEEecCCceeeeeeeH
Q 025022          173 RSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNID--DGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYV  247 (259)
Q Consensus       173 ~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  247 (259)
                      ...|+.+|.+.+.+++.++.+   +|+++..|.||.+-.|.....  .........+......++.         .+...
T Consensus       144 ~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~---------R~~~p  214 (245)
T d2ag5a1         144 RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTG---------RFATA  214 (245)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTS---------SCEEH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCC---------CCcCH
Confidence            578999999999999999876   479999999998877541100  0001112223333333321         25688


Q ss_pred             HHHHHHHHhhh
Q 025022          248 SDMVCKSCFLA  258 (259)
Q Consensus       248 ~D~a~~~~~~l  258 (259)
                      +|+|+++.+++
T Consensus       215 edva~~v~fL~  225 (245)
T d2ag5a1         215 EEIAMLCVYLA  225 (245)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999886

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.4e-21  Score=149.53  Aligned_cols=165  Identities=12%  Similarity=0.017  Sum_probs=128.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------c
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~   95 (259)
                      +.+||+++||||++.||++++++|+++|++ |++.+|+.++..+..++.. ...++..+.+|+++.+            +
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            367999999999999999999999999999 9999996544332222211 1357889999999988            6


Q ss_pred             CCcCEEEEccCCCCcccc----ccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCC
Q 025022           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~  166 (259)
                      +++|++||+||.......    .+.++..+++|+.++..+++++    ++.+. +||++||...+.              
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~--------------  148 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV--------------  148 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC--------------
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC--------------
Confidence            789999999997765322    2346789999999998887765    44555 999999987543              


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHH------hCCcEEEEEeccccCCC
Q 025022          167 VNPIGVRSCYDEGKRVAETLMFDYHRQ------HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       167 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~------~~~~~~~lr~~~v~g~~  210 (259)
                        +......|+.+|++.+.+.+.++.+      .|+++..+.||.+-.+.
T Consensus       149 --~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~  196 (244)
T d1yb1a_         149 --SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGF  196 (244)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCS
T ss_pred             --CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChh
Confidence              3333467999999999999998865      37999999999886543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.84  E-value=5.9e-20  Score=145.28  Aligned_cols=167  Identities=16%  Similarity=0.046  Sum_probs=127.0

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc--CCCceeEeecccCccc----------
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL----------   94 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~dl~~~~----------   94 (259)
                      ..++++|+++||||++.||+++++.|+++|++ |++.+++.....+...+.+  ....+..+.+|+++++          
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~   91 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV   91 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHH
Confidence            34488999999999999999999999999999 8888775433322222221  1356888999999987          


Q ss_pred             --cCCcCEEEEccCCCCcc----ccccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 --LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                        +.++|++||++|.....    ....+++..+++|+.++..+++++.+.=   .++++++|......            
T Consensus        92 ~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~------------  159 (272)
T d1g0oa_          92 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK------------  159 (272)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS------------
T ss_pred             HHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccc------------
Confidence              67899999999976542    2234567788999999999999886542   27777777642221            


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                         +......|+.+|++.+.+.+.++.+   +|+++..|.||.+-.+
T Consensus       160 ---~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~  203 (272)
T d1g0oa_         160 ---AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTD  203 (272)
T ss_dssp             ---SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSH
T ss_pred             ---cccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCCh
Confidence               3344567999999999999998876   4899999999988653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.1e-21  Score=152.13  Aligned_cols=158  Identities=18%  Similarity=0.142  Sum_probs=123.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccc------------c
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~------------~   95 (259)
                      ++|+++||||++.||+++++.|+++|++ |++.+|+.+...+..+++   ....++.++.+|+++++            +
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~-V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999999 999998655433333322   22347889999999987            5


Q ss_pred             CCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHH----h--CC--eEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----V--GA--RILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~--~~--~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      +++|++||+||...    ..++++.+++|+.++..+.+++.+    .  +.  +||++||...+.               
T Consensus        81 G~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~---------------  141 (254)
T d2gdza1          81 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM---------------  141 (254)
T ss_dssp             SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------------
T ss_pred             CCcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc---------------
Confidence            78999999999764    456788999999988888776643    2  21  799999986543               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHH--HHH---HhCCcEEEEEeccccCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFD--YHR---QHGIEIRIARIFNTYGP  209 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~--~~~---~~~~~~~~lr~~~v~g~  209 (259)
                       +......|+.+|.+.+.+.+.  ++.   .+|+++..|.||.+-.+
T Consensus       142 -~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~  187 (254)
T d2gdza1         142 -PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTA  187 (254)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSH
T ss_pred             -CCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCCh
Confidence             334456799999999999885  333   35799999999988654

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.84  E-value=1.8e-20  Score=146.49  Aligned_cols=194  Identities=15%  Similarity=0.092  Sum_probs=137.3

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cCCcCEE
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQI  101 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~~~d~v  101 (259)
                      +++||||++.||+++++.|+++|++ |++.+|+.+... .++..    ...+..+|+++.+            +.++|++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~-V~i~~r~~~~~~-~~~~~----~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiL   75 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHT-VACHDESFKQKD-ELEAF----AETYPQLKPMSEQEPAELIEAVTSAYGQVDVL   75 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCE-EEECCGGGGSHH-HHHHH----HHHCTTSEECCCCSHHHHHHHHHHHHSCCCEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCHHHHH-HHHhh----hCcEEEeccCCHHHHHHHHHHHHHHcCCCCEE
Confidence            6899999999999999999999998 999888654322 22222    2234567777766            6789999


Q ss_pred             EEccCCCCc-c----ccccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCC
Q 025022          102 YHLACPASP-I----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (259)
Q Consensus       102 i~~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~  171 (259)
                      |||||.... .    ...++++..+++|+.++..+++++    ++.+. +||++||...+.                +..
T Consensus        76 VnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~----------------~~~  139 (252)
T d1zmta1          76 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG----------------PWK  139 (252)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS----------------CCT
T ss_pred             EECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc----------------ccc
Confidence            999986432 1    123457788899999988888765    34454 999999986543                333


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcc----HHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          172 VRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGR----VVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       172 ~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      ....|+.+|.+.+.+.+.++.+.   |+++..|.||.+-.+........    ..+.....+.+..++..         +
T Consensus       140 ~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~R---------~  210 (252)
T d1zmta1         140 ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQR---------L  210 (252)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSS---------C
T ss_pred             cccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCCC---------C
Confidence            44679999999999999998764   79999999999977643221110    11223333333333222         4


Q ss_pred             eeHHHHHHHHHhhh
Q 025022          245 CYVSDMVCKSCFLA  258 (259)
Q Consensus       245 i~v~D~a~~~~~~l  258 (259)
                      ...+|+|+++++++
T Consensus       211 g~pedvA~~v~fL~  224 (252)
T d1zmta1         211 GTQKELGELVAFLA  224 (252)
T ss_dssp             BCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHh
Confidence            57899999999886

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.84  E-value=5.9e-20  Score=143.54  Aligned_cols=160  Identities=16%  Similarity=0.100  Sum_probs=126.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcc--hhhhccCCCceeEeecccCc-cc-----------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NLRKWIGHPRFELIRHDVTE-PL-----------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~dl~~-~~-----------   94 (259)
                      ++++|+|+||||++.||.+++++|+++|++ |+++.|+.+....  .+.......++.++.+|++. ..           
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~-vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   80 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLK-NFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD   80 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCS-EEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence            367999999999999999999999999999 7777765543221  12233345688899999974 32           


Q ss_pred             -cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHH----h---CC-eEEEEecceeecCCCCCCCCCCCcC
Q 025022           95 -LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----V---GA-RILLTSTSEVYGDPLVHPQDESYWG  165 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~---~~-~~i~~Ss~~~~~~~~~~~~~e~~~~  165 (259)
                       ++++|++||+||...    .++++..+++|+.++.++.+++.+    .   .. ++|++||...+.             
T Consensus        81 ~~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~-------------  143 (254)
T d1sbya1          81 QLKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN-------------  143 (254)
T ss_dssp             HHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------------
T ss_pred             HcCCCCEEEeCCCCCC----HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc-------------
Confidence             578999999999653    567889999999999999887643    1   12 899999987554             


Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          166 NVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                         +......|+.+|.+...+.+.++.+   +++++..|.||.+..+
T Consensus       144 ---~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~  187 (254)
T d1sbya1         144 ---AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTP  187 (254)
T ss_dssp             ---CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESH
T ss_pred             ---CCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCc
Confidence               4445578999999999999998865   4899999999999765

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.82  E-value=1.4e-19  Score=144.87  Aligned_cols=204  Identities=12%  Similarity=0.013  Sum_probs=139.3

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC--CCceeEeecccCccc-----------
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-----------   94 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~dl~~~~-----------   94 (259)
                      ...++|+++||||+|.||++++++|+++|++ |++.+|+.....+..+++..  ...+..+.+|+++.+           
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~-Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence            3578999999999999999999999999999 99999875543333322211  356788999999988           


Q ss_pred             -cCCcCEEEEccCCCCcccc----ccChhHHHHHhhhhHHHHHHHHH----Hh-CC-eEEEEecceeecCCCCCCCCCCC
Q 025022           95 -LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RV-GA-RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~-~~-~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                       +.++|++||+||.......    ..+....+.+|......+...+.    .. .. .++.+||.....           
T Consensus       100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~-----------  168 (294)
T d1w6ua_         100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET-----------  168 (294)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-----------
T ss_pred             hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh-----------
Confidence             6789999999997654222    23355667778777766655432    22 23 677777665333           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                           +......|+.+|.+.+.+.+.++.+   +|+++..|.||.+..+....... .............++.       
T Consensus       169 -----~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~~~~pl~-------  235 (294)
T d1w6ua_         169 -----GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLD-PTGTFEKEMIGRIPCG-------  235 (294)
T ss_dssp             -----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CC-TTSHHHHHHHTTCTTS-------
T ss_pred             -----cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccC-CcHHHHHHHhhcCCCC-------
Confidence                 2233467999999999999999876   47999999999998765321100 1112333333333322       


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                        .+...+|+|.++.+++
T Consensus       236 --R~~~pediA~~v~fL~  251 (294)
T d1w6ua_         236 --RLGTVEELANLAAFLC  251 (294)
T ss_dssp             --SCBCHHHHHHHHHHHT
T ss_pred             --CCCCHHHHHHHHHHHh
Confidence              2457899999999886

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.9e-19  Score=139.48  Aligned_cols=199  Identities=15%  Similarity=0.127  Sum_probs=139.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------cC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +.++|+++||||++.||.+++++|+++|++ |++++|+.+...+..++.  ........+|+.+..            ..
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~-V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKFG   78 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCChHHHHHHHHHh--CCCcccccccccccccccccccccccccc
Confidence            367999999999999999999999999998 999998766554444443  235667777777654            45


Q ss_pred             CcCEEEEccCCCCcc----------ccccChhHHHHHhhhhHHHHHHHHHHh----------CC-eEEEEecceeecCCC
Q 025022           97 EVDQIYHLACPASPI----------FYKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPL  155 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-~~i~~Ss~~~~~~~~  155 (259)
                      ..|.++++++.....          ...+.++..+++|+.++..+.+++.+.          +. +||++||...+.   
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~---  155 (248)
T d2o23a1          79 RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE---  155 (248)
T ss_dssp             CCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH---
T ss_pred             cccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc---
Confidence            688888877643321          112346678999999999999887542          23 899999987654   


Q ss_pred             CCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCe
Q 025022          156 VHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPL  232 (259)
Q Consensus       156 ~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~  232 (259)
                                   +......|+.+|.+.+.+.+.++.+.   |+++..+.||.+..+....    .............+ 
T Consensus       156 -------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~----~~~~~~~~~~~~~p-  217 (248)
T d2o23a1         156 -------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS----LPEKVCNFLASQVP-  217 (248)
T ss_dssp             -------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--------------CHHHHTCS-
T ss_pred             -------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhc----CCHHHHHHHHhcCC-
Confidence                         33445689999999999999998764   7999999999987664221    11222222222222 


Q ss_pred             EEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          233 TVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       233 ~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                       +.      ..+...+|+|+++++++
T Consensus       218 -l~------~R~g~peevA~~v~fL~  236 (248)
T d2o23a1         218 -FP------SRLGDPAEYAHLVQAII  236 (248)
T ss_dssp             -SS------CSCBCHHHHHHHHHHHH
T ss_pred             -CC------CCCcCHHHHHHHHHHHH
Confidence             11      12557899999998874

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.5e-19  Score=144.50  Aligned_cols=162  Identities=15%  Similarity=-0.001  Sum_probs=120.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC-----cchhhhccC--CCceeEeecccCccc--------
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-----KDNLRKWIG--HPRFELIRHDVTEPL--------   94 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~-----~~~~~~~~~--~~~~~~~~~dl~~~~--------   94 (259)
                      +++|+++||||++.||+++++.|+++|++ |++.+++.+..     .+.+++...  ........+|+.+.+        
T Consensus         5 l~gKvalITGas~GIG~aiA~~la~~Ga~-Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~   83 (302)
T d1gz6a_           5 FDGRVVLVTGAGGGLGRAYALAFAERGAL-VVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKT   83 (302)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHH
Confidence            57999999999999999999999999998 98888764321     111111100  012334556666654        


Q ss_pred             ----cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCC
Q 025022           95 ----LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 ----~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                          ++++|++|||||......    ..++++..+++|+.++..+++++    ++.+. +||++||...+.         
T Consensus        84 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~---------  154 (302)
T d1gz6a_          84 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIY---------  154 (302)
T ss_dssp             HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH---------
T ss_pred             HHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcC---------
Confidence                678999999999765422    23457889999999999988875    44555 999999986543         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYG  208 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g  208 (259)
                             +......|+.+|.+.+.+.+.++.+   +|+++..+.|+.+-.
T Consensus       155 -------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t  197 (302)
T d1gz6a_         155 -------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSR  197 (302)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCST
T ss_pred             -------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCc
Confidence                   2234467999999999999999876   479999999987643

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=1.7e-18  Score=135.02  Aligned_cols=166  Identities=14%  Similarity=0.033  Sum_probs=123.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHh---cCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------------
Q 025022           32 NMRILVTGGAGFIGSHLVDKLME---NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------------   94 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~---~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------------   94 (259)
                      ||+||||||++.||++++++|++   +|+. |++..|+.+...+..+......++.++.+|+++.+              
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   80 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQH-LFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK   80 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSE-EEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence            68999999999999999999975   5887 99999876654432221122468999999999987              


Q ss_pred             cCCcCEEEEccCCCCcc--c---cccChhHHHHHhhhhHHHHHHHHHH----h-----------CC-eEEEEecceeecC
Q 025022           95 LIEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAKR----V-----------GA-RILLTSTSEVYGD  153 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~~----~-----------~~-~~i~~Ss~~~~~~  153 (259)
                      ..++|++||+||.....  .   ...+.+..+++|+.++..+++++..    .           +. ++|++||....-.
T Consensus        81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~  160 (248)
T d1snya_          81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ  160 (248)
T ss_dssp             GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred             cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence            35799999999975432  1   2233667899999999998877632    1           23 8999998652210


Q ss_pred             CCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC
Q 025022          154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM  211 (259)
Q Consensus       154 ~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~  211 (259)
                        .           .+......|..||.+...+.+.++.+   .++++..+.||.+-.+..
T Consensus       161 --~-----------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~  208 (248)
T d1snya_         161 --G-----------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMG  208 (248)
T ss_dssp             --T-----------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTT
T ss_pred             --C-----------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcc
Confidence              0           03334467999999999999988765   479999999999876643

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.80  E-value=9.6e-19  Score=137.37  Aligned_cols=163  Identities=16%  Similarity=0.152  Sum_probs=121.8

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC---cchhhhcc-CCCceeEeecccCccc-----------c
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---KDNLRKWI-GHPRFELIRHDVTEPL-----------L   95 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~---~~~~~~~~-~~~~~~~~~~dl~~~~-----------~   95 (259)
                      .+.+++||||+|.||++++++|+++|+..|+++.|+....   .+..+++. ...++.++.+|+++.+           .
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~   87 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD   87 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc
Confidence            3569999999999999999999999997577777753221   11222211 1357899999999977           3


Q ss_pred             CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCC
Q 025022           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~  170 (259)
                      .++|.|||++|......    ...+.+..+++|+.+..++.+++...+. +||++||.....                +.
T Consensus        88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~----------------g~  151 (259)
T d2fr1a1          88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAF----------------GA  151 (259)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHT----------------CC
T ss_pred             ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhcc----------------CC
Confidence            46899999999776522    2234566788999999999998888776 999999986543                22


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 025022          171 GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR  210 (259)
Q Consensus       171 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lr~~~v~g~~  210 (259)
                      .....|+.+|...+.+.+.+.. .|++++.|.||.+.+++
T Consensus       152 ~~~~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g  190 (259)
T d2fr1a1         152 PGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSG  190 (259)
T ss_dssp             TTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC---
T ss_pred             cccHHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCc
Confidence            3345699999999999887754 58999999999888765

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=2.7e-19  Score=138.50  Aligned_cols=181  Identities=15%  Similarity=0.019  Sum_probs=126.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------------cC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------------LI   96 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------------~~   96 (259)
                      ++|+|+||||+|.||+++++.|+++|++ |+++++.......         ......++..+.+              ..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~-V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVENEEAS---------ASVIVKMTDSFTEQADQVTAEVGKLLGDQ   70 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSCCTTSS---------EEEECCCCSCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCcccccc---------ccceeecccCcHHHHHHHHHHHHHHhCCC
Confidence            4799999999999999999999999998 8888775433221         1222233332222              34


Q ss_pred             CcCEEEEccCCCCc-c----ccccChhHHHHHhhhhHHHHHHHHHHhC--C-eEEEEecceeecCCCCCCCCCCCcCCCC
Q 025022           97 EVDQIYHLACPASP-I----FYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (259)
Q Consensus        97 ~~d~vi~~a~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~  168 (259)
                      ++|++||+||.... .    ...++++..+++|+.++..+.+++.+.-  . +||++||.....                
T Consensus        71 ~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~----------------  134 (236)
T d1dhra_          71 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD----------------  134 (236)
T ss_dssp             CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------
T ss_pred             CceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC----------------
Confidence            69999999985332 1    1123466788999999999988886542  2 999999986543                


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeee
Q 025022          169 PIGVRSCYDEGKRVAETLMFDYHRQ-----HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS  243 (259)
Q Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (259)
                      +......|+.+|.+.+.+.+.++.+     .++++..+.||.+..|.            .+.......         .-.
T Consensus       135 ~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~------------~~~~~~~~~---------~~~  193 (236)
T d1dhra_         135 GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM------------NRKSMPEAD---------FSS  193 (236)
T ss_dssp             CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH------------HHHHSTTSC---------GGG
T ss_pred             CccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCc------------chhhCccch---------hhc
Confidence            3344568999999999999999865     47999999999887642            111111111         123


Q ss_pred             eeeHHHHHHHHHhhh
Q 025022          244 FCYVSDMVCKSCFLA  258 (259)
Q Consensus       244 ~i~v~D~a~~~~~~l  258 (259)
                      |+..+++|+.+.+++
T Consensus       194 ~~~pe~va~~~~~l~  208 (236)
T d1dhra_         194 WTPLEFLVETFHDWI  208 (236)
T ss_dssp             SEEHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            567788888887764

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=5.8e-20  Score=144.33  Aligned_cols=164  Identities=10%  Similarity=-0.030  Sum_probs=124.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHh---cCCCeEEEEcCCCCCCcchhhh---ccCCCceeEeecccCccc--------
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLME---NEKNEVIVVDNYFTGSKDNLRK---WIGHPRFELIRHDVTEPL--------   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~---~g~~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~dl~~~~--------   94 (259)
                      .+++|+++||||++.||.+++++|.+   +|+. |++++|+.....+..++   .....++..+.+|+++++        
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~-Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~   81 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSV-MLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA   81 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCE-EEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCE-EEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence            47789999999999999999999986   6888 99999865433322222   222357889999999976        


Q ss_pred             --------cCCcCEEEEccCCCCcc-------ccccChhHHHHHhhhhHHHHHHHHHHh----C--C-eEEEEecceeec
Q 025022           95 --------LIEVDQIYHLACPASPI-------FYKYNPVKTIKTNVIGTLNMLGLAKRV----G--A-RILLTSTSEVYG  152 (259)
Q Consensus        95 --------~~~~d~vi~~a~~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~-~~i~~Ss~~~~~  152 (259)
                              ....|++||+||.....       ...++++..+++|+.++..+.+++.+.    +  . ++|++||...+.
T Consensus        82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~  161 (259)
T d1oaaa_          82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred             HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence                    13578999999864321       112346778999999999999988542    2  2 899999986543


Q ss_pred             CCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH-hCCcEEEEEeccccCC
Q 025022          153 DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ-HGIEIRIARIFNTYGP  209 (259)
Q Consensus       153 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~lr~~~v~g~  209 (259)
                                      +......|+.+|.+.+.+.+.++.+ .++++..+.||.+-.+
T Consensus       162 ----------------~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~  203 (259)
T d1oaaa_         162 ----------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDND  203 (259)
T ss_dssp             ----------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSH
T ss_pred             ----------------CCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCH
Confidence                            4445578999999999999999865 4799999999888764

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.5e-19  Score=139.23  Aligned_cols=161  Identities=20%  Similarity=0.159  Sum_probs=119.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc---CCCCCCcchhh----hc-cCCCceeEeecccCccc---------
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD---NYFTGSKDNLR----KW-IGHPRFELIRHDVTEPL---------   94 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~---r~~~~~~~~~~----~~-~~~~~~~~~~~dl~~~~---------   94 (259)
                      .|.|+||||++.||+++++.|+++|.+ |+.+.   |+.... ..+.    .. ....++..+.+|+++.+         
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~-v~~v~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQ-SFKVYATLRDLKTQ-GRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTC-CEEEEEEESCGGGT-HHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCC-eEEEEEecCChhhh-HHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence            356899999999999999999999988 44443   322211 1111    11 12357889999999987         


Q ss_pred             -cCCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHH----HHhCC-eEEEEecceeecCCCCCCCCCCCc
Q 025022           95 -LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYW  164 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~  164 (259)
                       .+.+|+++|+||......    ..++++..+++|+.++.++++++    ++.+. ++|++||.....            
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~------------  147 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM------------  147 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS------------
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcC------------
Confidence             467999999999765422    23456788999999998888765    45565 999999986543            


Q ss_pred             CCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 025022          165 GNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPR  210 (259)
Q Consensus       165 ~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~  210 (259)
                          +......|+.+|++.+.+.+.++.+   +|++++.+.||.+-.+.
T Consensus       148 ----~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~  192 (285)
T d1jtva_         148 ----GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF  192 (285)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred             ----CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChH
Confidence                3344567999999999999999876   48999999999987653

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.79  E-value=4.1e-19  Score=137.45  Aligned_cols=179  Identities=17%  Similarity=0.109  Sum_probs=124.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--------------cCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------------LIE   97 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--------------~~~   97 (259)
                      ..||+||||+|.||++++++|+++|++ |++++|+......         ......+|..+.+              ..+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~-V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   71 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSANDQAD---------SNILVDGNKNWTEQEQSILEQTASSLQGSQ   71 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSCCTTSS---------EEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCchhccc---------ccceeccccCchhHHHHHHHHHHHHhcCCC
Confidence            458999999999999999999999999 9999986543221         1222333333322              467


Q ss_pred             cCEEEEccCCCCcc-c----cccChhHHHHHhhhhHHHHHHHHHHhC---CeEEEEecceeecCCCCCCCCCCCcCCCCC
Q 025022           98 VDQIYHLACPASPI-F----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (259)
Q Consensus        98 ~d~vi~~a~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~  169 (259)
                      +|++||+||..... .    ..+.++..+++|+.++..+++++.+.-   .++|++||...+.                +
T Consensus        72 iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~----------------~  135 (235)
T d1ooea_          72 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG----------------P  135 (235)
T ss_dssp             EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------C
T ss_pred             eeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC----------------C
Confidence            99999999964321 1    123356678999999999988886642   2999999986554                3


Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeee
Q 025022          170 IGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSF  244 (259)
Q Consensus       170 ~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (259)
                      ......|+.+|.+.+.+.+.++.+.     ++++..+.|+.+-.+.            .+.......         ...+
T Consensus       136 ~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~------------~~~~~~~~~---------~~~~  194 (235)
T d1ooea_         136 TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM------------NRKWMPNAD---------HSSW  194 (235)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH------------HHHHSTTCC---------GGGC
T ss_pred             cccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcc------------hhhhCcCCc---------cccC
Confidence            3445789999999999999998653     6788888888775431            222221111         1246


Q ss_pred             eeHHHHHHHHHhh
Q 025022          245 CYVSDMVCKSCFL  257 (259)
Q Consensus       245 i~v~D~a~~~~~~  257 (259)
                      +..+|+++.++.+
T Consensus       195 ~~~~~va~~~~~~  207 (235)
T d1ooea_         195 TPLSFISEHLLKW  207 (235)
T ss_dssp             BCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            6788888887643

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.78  E-value=6.9e-19  Score=144.16  Aligned_cols=192  Identities=11%  Similarity=-0.005  Sum_probs=128.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~  104 (259)
                      +.|+|+|||||||||++|+++|+++|++ |+++.|+.....  ........+++++.+|+.+..      +.+++.+++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~-V~~l~R~~~~~~--~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~   78 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHH-VRAQVHSLKGLI--AEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN   78 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCSCSHH--HHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCe-EEEEECCcchhh--hhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEee
Confidence            4689999999999999999999999999 999998654432  122223468999999998854      6788888876


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHH
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVA  183 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~  183 (259)
                      .....            ..++..+.++++++++.++ +++++||.......              ...+...|..+|...
T Consensus        79 ~~~~~------------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~--------------~~~~~~~~~~~k~~~  132 (350)
T d1xgka_          79 TTSQA------------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLY--------------GPWPAVPMWAPKFTV  132 (350)
T ss_dssp             CCSTT------------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGT--------------SSCCCCTTTHHHHHH
T ss_pred             ccccc------------chhhhhhhHHHHHHHHhCCCceEEEeeccccccC--------------CcccchhhhhhHHHH
Confidence            53221            1256667889999999998 88888886543321              223334577788877


Q ss_pred             HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCC-CeEEecCCceeeeeeeH-HHHHHHHHhhh
Q 025022          184 ETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGE-PLTVQAPGTQTRSFCYV-SDMVCKSCFLA  258 (259)
Q Consensus       184 e~~~~~~~~~~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v-~D~a~~~~~~l  258 (259)
                      |..+    ...+++++++|++..++.........+..   .....+. ....+..++...+++++ +|+++++..++
T Consensus       133 ~~~~----~~~~~~~~~vr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l  202 (350)
T d1xgka_         133 ENYV----RQLGLPSTFVYAGIYNNNFTSLPYPLFQM---ELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIF  202 (350)
T ss_dssp             HHHH----HTSSSCEEEEEECEEGGGCBSSSCSSCBE---EECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHH
T ss_pred             HHHH----HhhccCceeeeeceeeccccccccccccc---cccccccceeeecccCCCcceEEEeHHHHHHHHHHHH
Confidence            7665    55678999999998877432211110000   0001111 12333456677788876 78988877654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.5e-18  Score=134.89  Aligned_cols=200  Identities=14%  Similarity=0.030  Sum_probs=137.1

Q ss_pred             cCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------   94 (259)
                      +++|++|||||+|  .||.++++.|+++|++ |++.+|+++. .+...+.. ..........|+.+..            
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKL-KGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV   80 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESSTTT-HHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeCCHHH-HHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhc
Confidence            5789999999998  7999999999999999 8888887443 22222221 2345667777777655            


Q ss_pred             cCCcCEEEEccCCCCccccc---------cChhHHHHHhhhhHHHHHHHHHHhCC---eEEEEecceeecCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASPIFYK---------YNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDES  162 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~~~---------~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~~Ss~~~~~~~~~~~~~e~  162 (259)
                      ....|++||+++........         ......+..|..+...+.+.+...-.   .+|++||.....          
T Consensus        81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~----------  150 (258)
T d1qsga_          81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------  150 (258)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS----------
T ss_pred             ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc----------
Confidence            56789999999875432211         12344666777777777777755322   788888875332          


Q ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCc
Q 025022          163 YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH---GIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGT  239 (259)
Q Consensus       163 ~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (259)
                            +.+....|+.+|.+.+.+.+.++.+.   ++++..++||.+..+......  .............++.      
T Consensus       151 ------~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~--~~~~~~~~~~~~~pl~------  216 (258)
T d1qsga_         151 ------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIK--DFRKMLAHCEAVTPIR------  216 (258)
T ss_dssp             ------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGST--THHHHHHHHHHHSTTS------
T ss_pred             ------CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccc--hhhhHHHHHHhCCCCC------
Confidence                  22334679999999999999998774   699999999999876533211  1222333333333322      


Q ss_pred             eeeeeeeHHHHHHHHHhhh
Q 025022          240 QTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       240 ~~~~~i~v~D~a~~~~~~l  258 (259)
                         .+..++|+|.++.+++
T Consensus       217 ---R~~~peeia~~v~fL~  232 (258)
T d1qsga_         217 ---RTVTIEDVGNSAAFLC  232 (258)
T ss_dssp             ---SCCCHHHHHHHHHHHT
T ss_pred             ---CCcCHHHHHHHHHHHh
Confidence               2457899999999886

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.1e-18  Score=135.99  Aligned_cols=163  Identities=12%  Similarity=0.108  Sum_probs=123.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc--cCCCceeEeecccCccc------------c
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL------------L   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~~dl~~~~------------~   95 (259)
                      +++|+++||||+++||++++++|+++|++ |++++|+.+...+..++.  ........+.+|..+..            .
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~-Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999998 999998654433322221  12346777888887766            5


Q ss_pred             CCcCEEEEccCCCCccc----cccChhHHHHHhhhhHHHHHHHHH----HhCCeEEEEecceeecCCCCCCCCCCCcCCC
Q 025022           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGDPLVHPQDESYWGNV  167 (259)
Q Consensus        96 ~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~~Ss~~~~~~~~~~~~~e~~~~~~  167 (259)
                      ...|+++++||......    ..++.+..+++|+.++..+.+.+.    +.+.++|++||...+.               
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~---------------  155 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV---------------  155 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS---------------
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcC---------------
Confidence            67999999998765422    223456788999999888877663    3344999999976443               


Q ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCC
Q 025022          168 NPIGVRSCYDEGKRVAETLMFDYHRQH-----GIEIRIARIFNTYGP  209 (259)
Q Consensus       168 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~~~~~~lr~~~v~g~  209 (259)
                       +......|+.||++.+.+.+.++.+.     ++++..+.||.+-.+
T Consensus       156 -~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~  201 (269)
T d1xu9a_         156 -AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE  201 (269)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH
T ss_pred             -CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc
Confidence             34445789999999999999988652     588899999988654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.77  E-value=9.1e-18  Score=130.95  Aligned_cols=169  Identities=12%  Similarity=0.004  Sum_probs=118.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------------c-
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L-   95 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------------~-   95 (259)
                      |+.|+||||||++.||.+++++|+++|+. .|++..|+.+...+ +++. ...++.++.+|+++.+            + 
T Consensus         1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~-l~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   78 (250)
T d1yo6a1           1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE-LKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH-HHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred             CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH-HHHh-hCCceEEEEEecCCHHHHHHHHHHHHHHhC
Confidence            56799999999999999999999999964 37777776544332 2222 2357999999999987            2 


Q ss_pred             -CCcCEEEEccCCCCcc-----ccccChhHHHHHhhhhHHHHHHHHHH----h-----------C-CeEEEEecceeecC
Q 025022           96 -IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKR----V-----------G-ARILLTSTSEVYGD  153 (259)
Q Consensus        96 -~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~-----------~-~~~i~~Ss~~~~~~  153 (259)
                       .++|++||+||.....     ...++.+..+++|+.++..+.+++..    .           . .+++.+|+....-.
T Consensus        79 ~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~  158 (250)
T d1yo6a1          79 SDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT  158 (250)
T ss_dssp             GGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCST
T ss_pred             CCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccccccc
Confidence             2499999999975431     11234677999999999998877632    1           0 15677766543221


Q ss_pred             CCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 025022          154 PLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGP  209 (259)
Q Consensus       154 ~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~  209 (259)
                      ....   .      .+..+...|+.||++...+.+.++.+   .|+++..+.||.+-.+
T Consensus       159 ~~~~---~------~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~  208 (250)
T d1yo6a1         159 DNTS---G------SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTN  208 (250)
T ss_dssp             TCCS---T------TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC---
T ss_pred             CCcc---c------ccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCC
Confidence            1000   0      03334457999999999999998875   4799999999988654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.6e-18  Score=135.97  Aligned_cols=178  Identities=17%  Similarity=0.042  Sum_probs=123.2

Q ss_pred             CCEE-EEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------cC
Q 025022           32 NMRI-LVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (259)
Q Consensus        32 ~~~v-lItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------~~   96 (259)
                      +|+| +||||++.||.+++++|+++ |+. |++..|+.++..+..+++. ...++.++.+|+++.+            ++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~-Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGD-VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSE-EEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            5655 99999999999999999987 777 9999987554333322221 1357889999999988            57


Q ss_pred             CcCEEEEccCCCCcccc----ccChhHHHHHhhhhHHHHHHHHHHhC--C-eEEEEecceeecC-CCCC----------C
Q 025022           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTSTSEVYGD-PLVH----------P  158 (259)
Q Consensus        97 ~~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~~Ss~~~~~~-~~~~----------~  158 (259)
                      ++|++|||||.......    ..+.+..+++|+.++..+++.+.+.=  . ++|++||...... ....          .
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~~  160 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSET  160 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSS
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcccc
Confidence            89999999997654222    23456789999999999999886532  2 9999999743210 0000          0


Q ss_pred             CCCC--------------CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh-------CCcEEEEEeccccCCC
Q 025022          159 QDES--------------YWGNVNPIGVRSCYDEGKRVAETLMFDYHRQH-------GIEIRIARIFNTYGPR  210 (259)
Q Consensus       159 ~~e~--------------~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------~~~~~~lr~~~v~g~~  210 (259)
                      ..+.              ......+..+...|+.||.+...+.+.++.+.       ++++..+.||++-.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m  233 (275)
T d1wmaa1         161 ITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDM  233 (275)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTT
T ss_pred             cchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCc
Confidence            0000              00000133445679999999998887766542       7999999999987654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.72  E-value=6.8e-17  Score=127.70  Aligned_cols=200  Identities=12%  Similarity=-0.004  Sum_probs=126.1

Q ss_pred             cCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-CCCceeEeecccCccc------------
Q 025022           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~dl~~~~------------   94 (259)
                      +++|++|||||+|  .||.++++.|+++|++ |++.+|+++. .+..++.. ......+..+|++++.            
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r~~~~-~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   80 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYLNESL-EKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD   80 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEESSTTT-HHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeCCHHH-HHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH
Confidence            6789999999887  7999999999999999 9999987432 22222211 1345677888988877            


Q ss_pred             cCCcCEEEEccCCCCccccc-----cChhHHHH---HhhhhHHHHHHHHHHhCC---eEEEEecceeecCCCCCCCCCCC
Q 025022           95 LIEVDQIYHLACPASPIFYK-----YNPVKTIK---TNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESY  163 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~~~-----~~~~~~~~---~n~~~~~~l~~~~~~~~~---~~i~~Ss~~~~~~~~~~~~~e~~  163 (259)
                      +..+|++||++|........     ........   .+............+...   .++.+|+.....           
T Consensus        81 ~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~-----------  149 (274)
T d2pd4a1          81 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK-----------  149 (274)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred             cCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc-----------
Confidence            67899999999965432111     11222222   222223333333333322   455555544333           


Q ss_pred             cCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCce
Q 025022          164 WGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQ  240 (259)
Q Consensus       164 ~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (259)
                           +......|+.+|.+.+.+.+.++.+   +|+++..+.||.+..+.......  ............++        
T Consensus       150 -----~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~--~~~~~~~~~~~~p~--------  214 (274)
T d2pd4a1         150 -----YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIAD--FRMILKWNEINAPL--------  214 (274)
T ss_dssp             -----BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTT--HHHHHHHHHHHSTT--------
T ss_pred             -----ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCc--hHHHHHHHhhhhhc--------
Confidence                 3344467999999999999988776   47999999999888765322111  11222222222221        


Q ss_pred             eeeeeeHHHHHHHHHhhh
Q 025022          241 TRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       241 ~~~~i~v~D~a~~~~~~l  258 (259)
                       ..+...+|+|.++++++
T Consensus       215 -~r~~~pedIA~~v~fL~  231 (274)
T d2pd4a1         215 -RKNVSLEEVGNAGMYLL  231 (274)
T ss_dssp             -SSCCCHHHHHHHHHHHH
T ss_pred             -cCCcCHHHHHHHHHHHh
Confidence             12457899999999886

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=1.8e-16  Score=122.83  Aligned_cols=187  Identities=18%  Similarity=0.116  Sum_probs=127.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----------cCCcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------LIEVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----------~~~~d~  100 (259)
                      .|+++||||++.||+++++.|+++|++ |++.+|+.+.           ......++|+.+..           ....+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~-V~i~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~   68 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYR-VVVLDLRREG-----------EDLIYVEGDVTREEDVRRAVARAQEEAPLFA   68 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEESSCCS-----------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCccc-----------ccceEeeccccchhhhHHHHHhhhccccccc
Confidence            379999999999999999999999998 9999886432           13455667776655           234445


Q ss_pred             EEEccCCCCcc--------ccccChhHHHHHhhhhHHHHHHHHHHh----------CC-eEEEEecceeecCCCCCCCCC
Q 025022          101 IYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus       101 vi~~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                      +++.++.....        ......+..+++|..+...+.+.+...          +. +||++||...+.         
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~---------  139 (241)
T d1uaya_          69 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE---------  139 (241)
T ss_dssp             EEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH---------
T ss_pred             hhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc---------
Confidence            55555432211        111235677899999888887766432          23 899999987554         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPG  238 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (259)
                             +......|+.+|.+.+.+.+.++.+   +|+++..|.||.+..+.....    ............++  .+  
T Consensus       140 -------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~----~~~~~~~~~~~~~~--~~--  204 (241)
T d1uaya_         140 -------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL----PEKAKASLAAQVPF--PP--  204 (241)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS----CHHHHHHHHTTCCS--SC--
T ss_pred             -------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchh----hhhHHHHHHhcCCC--CC--
Confidence                   3344568999999999999999876   479999999999876542211    12222233332221  11  


Q ss_pred             ceeeeeeeHHHHHHHHHhhh
Q 025022          239 TQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       239 ~~~~~~i~v~D~a~~~~~~l  258 (259)
                          .+...+|+|+++++++
T Consensus       205 ----R~g~pedvA~~v~fL~  220 (241)
T d1uaya_         205 ----RLGRPEEYAALVLHIL  220 (241)
T ss_dssp             ----SCCCHHHHHHHHHHHH
T ss_pred             ----CCcCHHHHHHHHHHHH
Confidence                2457899999998875

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.69  E-value=4.1e-16  Score=123.76  Aligned_cols=196  Identities=14%  Similarity=0.024  Sum_probs=127.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---CCCceeEe-----------------ecccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELI-----------------RHDVT   91 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~-----------------~~dl~   91 (259)
                      ++.++||||++.||+++++.|+++|++ |++..++.....+.+...+   .......+                 .+|++
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~-V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~   80 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT   80 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCC
Confidence            468999999999999999999999999 7777665433322222211   11233333                 34455


Q ss_pred             ccc------------cCCcCEEEEccCCCCccccc----cC--------------hhHHHHHhhhhHHHHHHHHHHh---
Q 025022           92 EPL------------LIEVDQIYHLACPASPIFYK----YN--------------PVKTIKTNVIGTLNMLGLAKRV---  138 (259)
Q Consensus        92 ~~~------------~~~~d~vi~~a~~~~~~~~~----~~--------------~~~~~~~n~~~~~~l~~~~~~~---  138 (259)
                      +.+            ++++|++||+||........    .+              ....+.+|+.++..+.+.+.+.   
T Consensus        81 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~  160 (284)
T d1e7wa_          81 LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG  160 (284)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence            544            57899999999976532111    11              1236778888888888775431   


Q ss_pred             ------C-C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEecccc
Q 025022          139 ------G-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTY  207 (259)
Q Consensus       139 ------~-~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~  207 (259)
                            + . .+|+++|.....                +......|+.+|.+.+.+.+.++.+   +|+++..+.||.+-
T Consensus       161 ~~~~~~~~~~~ii~~~s~~~~~----------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~  224 (284)
T d1e7wa_         161 TPAKHRGTNYSIINMVDAMTNQ----------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSV  224 (284)
T ss_dssp             SCGGGSCSCEEEEEECCTTTTS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBC
T ss_pred             hHHHhcCCCCcccccccccccC----------------CccceeeeccccccchhhhHHHHHHhCCcccccccccccccc
Confidence                  2 2 677777654322                3344568999999999999999876   47999999998643


Q ss_pred             CCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          208 GPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       208 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      ...      .......+......++  .+      .+...+|+|+++++++
T Consensus       225 ~~~------~~~~~~~~~~~~~~pl--~~------R~~~peeiA~~v~fL~  261 (284)
T d1e7wa_         225 LVD------DMPPAVWEGHRSKVPL--YQ------RDSSAAEVSDVVIFLC  261 (284)
T ss_dssp             CGG------GSCHHHHHHHHTTCTT--TT------SCBCHHHHHHHHHHHH
T ss_pred             ccc------cCCHHHHHHHHhcCCC--CC------CCCCHHHHHHHHHHHh
Confidence            222      1223444444443331  11      2457899999999886

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.69  E-value=7.6e-16  Score=122.97  Aligned_cols=204  Identities=9%  Similarity=-0.018  Sum_probs=131.3

Q ss_pred             cccCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCCCC------------cchhhhccCCC---ceeEeeccc
Q 025022           28 FFQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGS------------KDNLRKWIGHP---RFELIRHDV   90 (259)
Q Consensus        28 ~~~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~------------~~~~~~~~~~~---~~~~~~~dl   90 (259)
                      .++++|++|||||+|  .||+++++.|+++|++ |++..|+....            ...........   ++..+..++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF   82 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence            457899999999887  8999999999999999 88877642110            00000000000   111111111


Q ss_pred             ------------------Cccc------------cCCcCEEEEccCCCCc------cccccChhHHHHHhhhhHHHHHHH
Q 025022           91 ------------------TEPL------------LIEVDQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGL  134 (259)
Q Consensus        91 ------------------~~~~------------~~~~d~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~  134 (259)
                                        .+..            +.++|++||+||....      +...+++...+++|+.+...++++
T Consensus        83 ~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~  162 (297)
T d1d7oa_          83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH  162 (297)
T ss_dssp             CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhH
Confidence                              1111            5689999999986431      122345678899999999999998


Q ss_pred             HHHhCC---eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHH----HhCCcEEEEEecccc
Q 025022          135 AKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHR----QHGIEIRIARIFNTY  207 (259)
Q Consensus       135 ~~~~~~---~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~----~~~~~~~~lr~~~v~  207 (259)
                      +.....   .++.+++......               .......|..+|...+.+.+.++.    .+++++..+.||.+.
T Consensus       163 ~~~~~~~~g~~~~~~~~~~~~~---------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~  227 (297)
T d1d7oa_         163 FLPIMNPGGASISLTYIASERI---------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLG  227 (297)
T ss_dssp             HGGGEEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCB
T ss_pred             HHHHhhcCCcceeeeehhhccc---------------ccccccceecccccccccccccchhccccceEEeccccccccc
Confidence            865533   5566665543321               223345799999999888776544    458999999999998


Q ss_pred             CCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          208 GPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       208 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      .+.....  .....+.+......|+.         .+...+|+|.++++++
T Consensus       228 T~~~~~~--~~~~~~~~~~~~~~Plg---------R~~~peevA~~v~fL~  267 (297)
T d1d7oa_         228 SRAAKAI--GFIDTMIEYSYNNAPIQ---------KTLTADEVGNAAAFLV  267 (297)
T ss_dssp             CCCSSCC--SHHHHHHHHHHHHSSSC---------CCBCHHHHHHHHHHHT
T ss_pred             chhhhhc--cCCHHHHHHHHhCCCCC---------CCCCHHHHHHHHHHHh
Confidence            8764321  23344555554444432         2457899999999886

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.69  E-value=1.8e-16  Score=124.85  Aligned_cols=203  Identities=12%  Similarity=0.052  Sum_probs=129.3

Q ss_pred             cCCCEEEEEcCch--hhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------------
Q 025022           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------------   94 (259)
Q Consensus        30 ~~~~~vlItGatG--~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------------   94 (259)
                      +++|+++||||+|  .||.+++++|.++|++ |++..|+..+..+.+.+.. ..+...+.+|+.+++             
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~-Vil~~~~~~~~~~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~~~~   81 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAI   81 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCE-EEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCE-EEEEeCChHHHHHHHHHHc-CCceeeEeeecccccccccccchhhhcc
Confidence            6789999999654  6999999999999999 8888886544333333333 246778899999875             


Q ss_pred             --cCCcCEEEEccCCCCccc------c---ccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecceeecCCCCCCCCC
Q 025022           95 --LIEVDQIYHLACPASPIF------Y---KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDE  161 (259)
Q Consensus        95 --~~~~d~vi~~a~~~~~~~------~---~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~~~~~~~~~~~~e  161 (259)
                        ...+|+++|++|......      .   .......+..|........+.+.....  .++.++|.....         
T Consensus        82 ~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~---------  152 (268)
T d2h7ma1          82 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR---------  152 (268)
T ss_dssp             CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS---------
T ss_pred             ccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc---------
Confidence              356899999999653211      1   122333455556666655555554433  444454443222         


Q ss_pred             CCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC--------CCCCccHHHHHHHHHHcCC
Q 025022          162 SYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRM--------NIDDGRVVSNFIAQAIRGE  230 (259)
Q Consensus       162 ~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~--------~~~~~~~~~~~~~~~~~~~  230 (259)
                             +.+....|+.+|.+.+.+.+.++.+   +++++..|.||.+-.+..        ..........+.....+..
T Consensus       153 -------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (268)
T d2h7ma1         153 -------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRA  225 (268)
T ss_dssp             -------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHC
T ss_pred             -------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcC
Confidence                   2334468999999999999998876   379999999998865421        0000011122222332322


Q ss_pred             CeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          231 PLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       231 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      |+.        +.+..++|+|+++.+++
T Consensus       226 pl~--------rr~~~p~dva~~v~fL~  245 (268)
T d2h7ma1         226 PIG--------WNMKDATPVAKTVCALL  245 (268)
T ss_dssp             TTC--------CCTTCCHHHHHHHHHHH
T ss_pred             CCC--------CCCCCHHHHHHHHHHHh
Confidence            221        12446799999998876

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.68  E-value=1.6e-15  Score=119.04  Aligned_cols=195  Identities=16%  Similarity=0.098  Sum_probs=125.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc---CCCceeEeecccCccc---------------
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL---------------   94 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~---------------   94 (259)
                      .+++||||++.||++++++|+++|++ |++.+|+.+...+.+.+.+   ..........|..+..               
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~-Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFR-VVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR   80 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHH
Confidence            47899999999999999999999998 9999987544333322211   1234555555554322               


Q ss_pred             -cCCcCEEEEccCCCCccccc---------------cChhHHHHHhhhhHHHHHHHHHHh---------CC-eEEEEecc
Q 025022           95 -LIEVDQIYHLACPASPIFYK---------------YNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTS  148 (259)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~~~---------------~~~~~~~~~n~~~~~~l~~~~~~~---------~~-~~i~~Ss~  148 (259)
                       ++++|++||+||........               ......+..|..............         .. .++.+|+.
T Consensus        81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (266)
T d1mxha_          81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA  160 (266)
T ss_dssp             HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred             HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence             57899999999965432110               112334455555555555544332         11 45555554


Q ss_pred             eeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHH
Q 025022          149 EVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQ  225 (259)
Q Consensus       149 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~  225 (259)
                      ....                +.+....|+.+|.+.+.+.+.++.+   +|+++..|.||.+..+...+      ....+.
T Consensus       161 ~~~~----------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~------~~~~~~  218 (266)
T d1mxha_         161 MTDL----------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP------QETQEE  218 (266)
T ss_dssp             GGGS----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC------HHHHHH
T ss_pred             cccc----------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC------HHHHHH
Confidence            4322                3345578999999999999998875   57999999999987665322      233334


Q ss_pred             HHcCCCeEEecCCceeeeeeeHHHHHHHHHhhh
Q 025022          226 AIRGEPLTVQAPGTQTRSFCYVSDMVCKSCFLA  258 (259)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  258 (259)
                      +...-++   +     +-+...+|+|.++++++
T Consensus       219 ~~~~~pl---~-----r~~~~peeva~~v~fL~  243 (266)
T d1mxha_         219 YRRKVPL---G-----QSEASAAQIADAIAFLV  243 (266)
T ss_dssp             HHTTCTT---T-----SCCBCHHHHHHHHHHHH
T ss_pred             HHhcCCC---C-----CCCCCHHHHHHHHHHHh
Confidence            4433332   1     12347899999999886

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.64  E-value=2.5e-15  Score=121.51  Aligned_cols=162  Identities=8%  Similarity=-0.022  Sum_probs=108.4

Q ss_pred             CCCEEEEEc--CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc------------chhhhcc-CCCceeEeec-------
Q 025022           31 SNMRILVTG--GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK------------DNLRKWI-GHPRFELIRH-------   88 (259)
Q Consensus        31 ~~~~vlItG--atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~------------~~~~~~~-~~~~~~~~~~-------   88 (259)
                      ++|.+||||  ++..||.++++.|.++|.+ |++..+......            +...... .........+       
T Consensus         1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~-V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (329)
T d1uh5a_           1 NEDICFIAGIGDTNGYGWGIAKELSKRNVK-IIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTA   79 (329)
T ss_dssp             CCCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSG
T ss_pred             CCcEEEEeCCCCCChHHHHHHHHHHHcCCE-EEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhh
Confidence            368999999  5579999999999999999 777765432110            0000000 0011122222       


Q ss_pred             -------------ccCccc------------cCCcCEEEEccCCCCc------cccccChhHHHHHhhhhHHHHHHHHHH
Q 025022           89 -------------DVTEPL------------LIEVDQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLAKR  137 (259)
Q Consensus        89 -------------dl~~~~------------~~~~d~vi~~a~~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~  137 (259)
                                   |+.+.+            +.++|++||+||....      +...+++...+++|+.++..+++++.+
T Consensus        80 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~  159 (329)
T d1uh5a_          80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN  159 (329)
T ss_dssp             GGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred             cccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHh
Confidence                         333333            5789999999986542      122345778889999999999888866


Q ss_pred             hC--C-eEEEEecceeecCCCCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccC
Q 025022          138 VG--A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQ----HGIEIRIARIFNTYG  208 (259)
Q Consensus       138 ~~--~-~~i~~Ss~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lr~~~v~g  208 (259)
                      .-  . ++|.+||......               -+.....|+.+|.+.+.+.+.++.+    +||++..|.||.+-.
T Consensus       160 ~m~~~GsIv~iss~~~~~~---------------~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T  222 (329)
T d1uh5a_         160 IMKPQSSIISLTYHASQKV---------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS  222 (329)
T ss_dssp             GEEEEEEEEEEECGGGTSC---------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred             hcccccccccceeehhccc---------------ccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccc
Confidence            41  2 8999988654331               1122356999999999999988753    589999999997754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.56  E-value=1.5e-15  Score=118.69  Aligned_cols=210  Identities=12%  Similarity=0.004  Sum_probs=113.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~~  111 (259)
                      ||+|+||||++.||+++++.|+++|++ |++++|+.......+...   ........|........+|+++++||.... 
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~-V~~~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~id~lv~~Ag~~~~-   75 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQ-IVGIDIRDAEVIADLSTA---EGRKQAIADVLAKCSKGMDGLVLCAGLGPQ-   75 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSSSSEECCTTSH---HHHHHHHHHHHTTCTTCCSEEEECCCCCTT-
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECChHHHHHHhcCH---HHHHHHHHHHHHHhCCCCcEEEEcCCCCCc-
Confidence            578999999999999999999999999 988888643221111100   011111122222224579999999986532 


Q ss_pred             ccccChhHHHHHhhhhHHHHHHHHHH----hCC-eEEEEecceeecC-CCCCCCCC----------CCc-CCCCCCCCCC
Q 025022          112 FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGD-PLVHPQDE----------SYW-GNVNPIGVRS  174 (259)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~~Ss~~~~~~-~~~~~~~e----------~~~-~~~~~~~~~~  174 (259)
                        ..........|..+...+.+....    ... ....+++...... ....+...          .+. .......+..
T Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~~~~~~~~~~~  153 (257)
T d1fjha_          76 --TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNL  153 (257)
T ss_dssp             --CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeehhccCCCcchH
Confidence              344566677788877777665432    233 4444444322110 00000000          000 0000111224


Q ss_pred             chHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCccHHHHHHHHHHcCCCeEEecCCceeeeeeeHHHHH
Q 025022          175 CYDEGKRVAETLMFDYHRQ---HGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRSFCYVSDMV  251 (259)
Q Consensus       175 ~Y~~sK~~~e~~~~~~~~~---~~~~~~~lr~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a  251 (259)
                      .|+.+|.+.+.+.+.++.+   +||++..|.||.+-.|.......  -..+.+...+..        ....-+...+|+|
T Consensus       154 ~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~--~~~~~~~~~~~~--------~PlgR~g~p~eva  223 (257)
T d1fjha_         154 AYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ--DPRYGESIAKFV--------PPMGRRAEPSEMA  223 (257)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------CC--------CSTTSCCCTHHHH
T ss_pred             HHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcC--CHHHHHHHHhcC--------CCCCCCcCHHHHH
Confidence            6999999999999998865   47999999999987764221000  001111111110        1112356789999


Q ss_pred             HHHHhhh
Q 025022          252 CKSCFLA  258 (259)
Q Consensus       252 ~~~~~~l  258 (259)
                      .++.+|+
T Consensus       224 ~~v~fL~  230 (257)
T d1fjha_         224 SVIAFLM  230 (257)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999886

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.37  E-value=3.2e-15  Score=111.47  Aligned_cols=80  Identities=8%  Similarity=0.094  Sum_probs=62.7

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEE
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIY  102 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi  102 (259)
                      .++++|+++||||+|+||+.+++.|+++|.+ |+++.|+.++..+..+......++....+|+.+.+     ..++|+||
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili   97 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF   97 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccc-hhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence            3578999999999999999999999999998 99999975544333333222235667778888766     78899999


Q ss_pred             EccCCC
Q 025022          103 HLACPA  108 (259)
Q Consensus       103 ~~a~~~  108 (259)
                      |+||..
T Consensus        98 n~Ag~g  103 (191)
T d1luaa1          98 TAGAIG  103 (191)
T ss_dssp             ECCCTT
T ss_pred             ecCccc
Confidence            999864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.55  E-value=8.2e-07  Score=61.69  Aligned_cols=111  Identities=13%  Similarity=0.139  Sum_probs=73.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCc-ch----hhhcc--CCCceeEe-ecccCccccCCcCEEEE
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSK-DN----LRKWI--GHPRFELI-RHDVTEPLLIEVDQIYH  103 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~-~~----~~~~~--~~~~~~~~-~~dl~~~~~~~~d~vi~  103 (259)
                      |||.|+||+|.+|++++..|..++. .+++.+++.+.... +.    +....  .....+.. .++-...++.++|+||.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            7899999999999999999999884 45888887532211 11    11110  11222222 12111223789999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEE
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT  145 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~  145 (259)
                      +||...  ....+..+.+..|....+.+++...+.+. .++.+
T Consensus        81 tAG~~~--~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV  121 (145)
T d1hyea1          81 TSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI  121 (145)
T ss_dssp             CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             eccccc--CCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence            999653  33446778899999999999999988765 44433

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.54  E-value=6.5e-07  Score=62.16  Aligned_cols=109  Identities=16%  Similarity=0.012  Sum_probs=73.7

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccCC---CceeEeecccCccc-cCCcCEEEEccCCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH---PRFELIRHDVTEPL-LIEVDQIYHLACPA  108 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~dl~~~~-~~~~d~vi~~a~~~  108 (259)
                      ||.|+||+|.+|++++..|..++. .+++.++.++.. .+.+ .+...   .........-..++ ++++|+||.+||..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~-~~a~-Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~   79 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP-GVAA-DLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHH-HHHH-HHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccc-hhhH-HHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence            799999999999999999998886 568888764321 1111 11111   11111111111122 78999999999965


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      .  ....+..+.+..|....+.+++.+.+++.  .++.+|
T Consensus        80 ~--~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt  117 (144)
T d1mlda1          80 R--KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS  117 (144)
T ss_dssp             C--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             C--CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            3  33446677889999999999999999876  566555

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=2e-06  Score=59.63  Aligned_cols=110  Identities=17%  Similarity=0.109  Sum_probs=72.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhc-C-CCeEEEEcCCCCCCcchhhhccCC----CceeEeecccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMEN-E-KNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~-g-~~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |||.|+|++|.+|++++-.|..+ + ..+++.++..+.  .......+.+    .....+.++-...++++.|+||.+||
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~--~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG   78 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV--TPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAG   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT--HHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc--chhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCC
Confidence            79999999999999999887543 4 345888876432  1111111111    12222222111122789999999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ...  ....+..+++..|....+.+++.+.+.+.  .+|.+|
T Consensus        79 ~~~--k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt  118 (145)
T d2cmda1          79 VRR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT  118 (145)
T ss_dssp             CCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             ccC--CCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence            753  33446677889999999999999998865  566555

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.40  E-value=1e-06  Score=61.35  Aligned_cols=111  Identities=13%  Similarity=0.149  Sum_probs=71.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcch---hhh-ccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRK-WIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~-~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      +.|||.|.|+ |++|..++..|+.+|. .+++++++++......   +.. ...........+|..+  ..++|+||.+|
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~--~~~adivvita   80 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD--CKDADLVVITA   80 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG--GTTCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH--hccccEEEEec
Confidence            3579999995 9999999999999884 4699998754321110   110 0112233445556543  67999999999


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      |...  ....+..+.+..|....+.+++.+.+.+.  .++.+|
T Consensus        81 g~~~--~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt  121 (146)
T d1ez4a1          81 GAPQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (146)
T ss_dssp             CC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             cccc--CCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            8654  22345667778899999999999998876  444444

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=6.8e-07  Score=62.10  Aligned_cols=97  Identities=13%  Similarity=0.046  Sum_probs=55.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcC---CCeEEEEcCCCCCCcchhhhccCCCceeEeecccCcc-ccCCcCEEEEccCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENE---KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACP  107 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g---~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~-~~~~~d~vi~~a~~  107 (259)
                      |++|.|+||||++|+.+++.|+++.   ..+++.+.++...... ....    .-.....++.+. .+.++|++|.+++.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~-~~~~----~~~~~~~~~~~~~~~~~~DivF~a~~~   75 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA-PSFG----GTTGTLQDAFDLEALKALDIIVTCQGG   75 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC-CGGG----TCCCBCEETTCHHHHHTCSEEEECSCH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc-cccc----CCceeeecccchhhhhcCcEEEEecCc
Confidence            5689999999999999999888763   3346666554332211 1100    011112222232 36789999998741


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceee
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~  151 (259)
                                        .....+...+.+.|.+.+.++..+.|
T Consensus        76 ------------------~~s~~~~~~~~~~g~~~~VID~Ss~f  101 (146)
T d1t4ba1          76 ------------------DYTNEIYPKLRESGWQGYWIDAASSL  101 (146)
T ss_dssp             ------------------HHHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred             ------------------hHHHHhhHHHHhcCCCeecccCCccc
Confidence                              12345666777777654444444433

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.37  E-value=6.3e-07  Score=62.65  Aligned_cols=112  Identities=15%  Similarity=0.210  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcch---hhhc--cCCCceeEeecccCccccCCcCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRKW--IGHPRFELIRHDVTEPLLIEVDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~--~~~~~~~~~~~dl~~~~~~~~d~vi~  103 (259)
                      ..++||.|+|+ |++|.+++..|..++. .+++.+++.+......   +...  +..........|.  .++.++|+||.
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~--~~l~daDvvvi   80 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--DDCRDADLVVI   80 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--GGTTTCSEEEE
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH--HHhccceeEEE
Confidence            45679999996 9999999999999875 3588888754321111   1110  1112333444444  23789999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ++|...  .......+.+..|....+.+++.+.+++.  .++.+|
T Consensus        81 tag~~~--~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt  123 (148)
T d1ldna1          81 CAGANQ--KPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT  123 (148)
T ss_dssp             CCSCCC--CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             eccccc--ccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence            998654  23445567788899999999999988865  556554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.37  E-value=9.7e-07  Score=60.50  Aligned_cols=67  Identities=21%  Similarity=0.255  Sum_probs=52.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      |+|+|+|+ |.+|+.+++.|.+.|++ |++++.++.    ..+...+..+...+.+|.++.+      ..++|.++-+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~-v~vid~d~~----~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHD-IVLIDIDKD----ICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHH----HHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCC-cceecCChh----hhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence            79999997 99999999999999998 999987433    3322211126788999999988      56788888654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.32  E-value=3e-06  Score=59.47  Aligned_cols=115  Identities=12%  Similarity=0.023  Sum_probs=74.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-----CCCceeEeecccCccccCCcCEEEEcc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-----GHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      +.+||.|.|+ |.+|+.++..|...+..++++++.++.........+.     ..........+-.+.+..+.|+|+.++
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            4579999997 9999999998888887678888875543221111110     011111222222223367899999999


Q ss_pred             CCCCccc---cccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          106 CPASPIF---YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       106 ~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      |......   ...+..+.+..|....+.+++.+.+.+.  .++.+|
T Consensus        85 g~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          85 GLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             SCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             ccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            8764321   1135567788899999999999998876  555444

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.30  E-value=1.9e-06  Score=59.74  Aligned_cols=110  Identities=14%  Similarity=0.038  Sum_probs=73.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccC-----CCceeEeecccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |||.|+|+ |.+|++++..|...+. .++++++.++............     .....+...+. .+++.++|+++.+||
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~~dadvvvitag   78 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSND-YADTANSDIVIITAG   78 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGGTTCSEEEECCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCC-HHHhcCCeEEEEEEe
Confidence            78999996 9999999999999874 4688888765432211111111     11233332211 223789999999998


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ...  ....+..+.+..|....+.+++.+.+.+.  .++.+|
T Consensus        79 ~~~--~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1guza1          79 LPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (142)
T ss_dssp             CCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             cCC--CCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence            653  23345677888999999999999988765  455444

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.28  E-value=8.2e-06  Score=56.21  Aligned_cols=109  Identities=14%  Similarity=0.011  Sum_probs=75.0

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCc---ch--hhh-ccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSK---DN--LRK-WIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~---~~--~~~-~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      ||.|+||+|.+|++++-.|..++.. +++.++.......   +.  +.. ...........+|..  ++.++|+|+.+||
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~--~~~~aDiVvitaG   79 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE--DTAGSDVVVITAG   79 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG--GGTTCSEEEECCC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH--HhhhcCEEEEecc
Confidence            7999999999999999999999754 5777775322111   01  111 011233444445433  3679999999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ...  ....+..+.+..|....+.+++...+.+.  .++.+|
T Consensus        80 ~~~--~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt  119 (142)
T d1o6za1          80 IPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (142)
T ss_dssp             CCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             ccc--ccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence            653  33456778899999999999999998865  555554

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.25  E-value=1.3e-05  Score=55.20  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=70.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhhccC----CCceeEeecccCccccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      +||.|+|+ |.+|..++-.|+.++. .+++++++..........++..    ........+|.  .+..++|+|+.+||.
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~--~~~~~adivvitag~   78 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDY--SDVKDCDVIVVTAGA   78 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CG--GGGTTCSEEEECCCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcH--HHhCCCceEEEeccc
Confidence            57999996 9999999999999875 3599998766543322211111    12333333332  237899999999986


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ..  ....+..+.+..|....+.+++.+.+.+.  .++.+|
T Consensus        79 ~~--~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt  117 (142)
T d1y6ja1          79 NR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  117 (142)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             cc--CcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence            53  23456678889999999999999998865  455444

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.21  E-value=7e-06  Score=56.84  Aligned_cols=95  Identities=17%  Similarity=0.147  Sum_probs=57.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~  109 (259)
                      .|+|.|.|||||+|+.+++.|.++++.  ++..+..+...- ..+..    ..-+....++.+..+.++|++|.+++.  
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~G-k~i~~----~~~~~~~~~~~~~~~~~~d~vf~a~p~--   74 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG-QRMGF----AESSLRVGDVDSFDFSSVGLAFFAAAA--   74 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT-CEEEE----TTEEEECEEGGGCCGGGCSEEEECSCH--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCC-cceee----ccccchhccchhhhhccceEEEecCCc--
Confidence            489999999999999999999765533  366554432211 11111    112233334444447789999887631  


Q ss_pred             ccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                      .....+...+.+.+.++|=.||..
T Consensus        75 ----------------~~s~~~~~~~~~~g~~VID~Ss~f   98 (144)
T d2hjsa1          75 ----------------EVSRAHAERARAAGCSVIDLSGAL   98 (144)
T ss_dssp             ----------------HHHHHHHHHHHHTTCEEEETTCTT
T ss_pred             ----------------chhhhhccccccCCceEEeechhh
Confidence                            112345566667777888777653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=8.8e-06  Score=56.06  Aligned_cols=109  Identities=14%  Similarity=0.069  Sum_probs=73.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchhhh----ccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRK----WIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      |||.|.|+ |.+|.+++..|+.++. .+++.++.++........+    ..-........+|..  +++++|+|+.+||.
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~--~~~~adivvitag~   77 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYA--DLKGSDVVIVAAGV   77 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGG--GGTTCSEEEECCCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHH--HhcCCCEEEEeccc
Confidence            79999996 9999999999988874 4588888754321111111    000123344444432  37899999999987


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ..  .......+.+..|....+.+++...+.+.  .++.+|
T Consensus        78 ~~--~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt  116 (140)
T d1a5za1          78 PQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (140)
T ss_dssp             CC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             cc--CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence            54  23445667888899999999999998876  555444

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=98.15  E-value=9.6e-06  Score=57.98  Aligned_cols=113  Identities=15%  Similarity=0.100  Sum_probs=71.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcC---CC---eEEEEcCCCCCC-cchhhhccC---CCceeE-eecccCccccCCcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENE---KN---EVIVVDNYFTGS-KDNLRKWIG---HPRFEL-IRHDVTEPLLIEVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g---~~---~V~~~~r~~~~~-~~~~~~~~~---~~~~~~-~~~dl~~~~~~~~d~  100 (259)
                      ..+|.|+||+|.||++++-.|.+..   ..   .+..++...... .+.+...+.   .+.... ..++-...++.+.|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            3489999999999999999998742   22   244444432211 111111111   112222 222222233889999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CC--eEEEEe
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTS  146 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~~i~~S  146 (259)
                      ||-++|...  .......+.+..|....+.+.+.+.+. +.  +++.+|
T Consensus       104 Vvi~ag~~r--kpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~  150 (175)
T d7mdha1         104 ALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG  150 (175)
T ss_dssp             EEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             EEEeeccCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence            999998753  445677889999999999999999886 43  566555

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.15  E-value=8.8e-06  Score=56.15  Aligned_cols=108  Identities=19%  Similarity=0.107  Sum_probs=73.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcch---hhh---ccCCCceeEe-ecccCccccCCcCEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRK---WIGHPRFELI-RHDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~---~~~~~~~~~~-~~dl~~~~~~~~d~vi~~  104 (259)
                      |||.|+|+ |.+|.+++..|..++. .++++++.++......   +..   ... ...... ..|.  +++.+.|+||.+
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~-~~~~i~~~~d~--~~~~~adiVvit   76 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGID-KYPKIVGGADY--SLLKGSEIIVVT   76 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTT-CCCEEEEESCG--GGGTTCSEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccC-CCCccccCCCH--HHhccccEEEEe
Confidence            79999996 9999999999988874 4688888754322111   111   111 112222 2343  347899999999


Q ss_pred             cCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ||...  ....+..+.+..|......+++.+++.+.  .++.+|
T Consensus        77 ag~~~--~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1ojua1          77 AGLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (142)
T ss_dssp             CCCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             ccccC--CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence            98654  33446678888999999999999998865  455444

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.14  E-value=1.7e-05  Score=55.67  Aligned_cols=112  Identities=14%  Similarity=0.096  Sum_probs=75.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcchh---hh--ccCCCceeEeecccCccccCCcCEEEE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNL---RK--WIGHPRFELIRHDVTEPLLIEVDQIYH  103 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~~---~~--~~~~~~~~~~~~dl~~~~~~~~d~vi~  103 (259)
                      .+.+||.|+|+ |.+|..++-.|..+|. .+++.++++++......   ..  .+.........+|..  ++.++|+|+.
T Consensus        18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~--~~~~adiVVi   94 (160)
T d1i0za1          18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYS--VTANSKIVVV   94 (160)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGG--GGTTCSEEEE
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchh--hcccccEEEE
Confidence            34579999996 9999999999999985 45888887533221111   11  011112222233332  3789999999


Q ss_pred             ccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      +||...  ....+..+.+..|....+.++....+.+.  -+|.+|
T Consensus        95 tAg~~~--~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt  137 (160)
T d1i0za1          95 TAGVRQ--QEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS  137 (160)
T ss_dssp             CCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             ecCCcc--ccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            999754  23455677888999999999999998876  556555

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.12  E-value=1.6e-05  Score=54.76  Aligned_cols=110  Identities=15%  Similarity=0.121  Sum_probs=73.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcch---hhhcc-CCCceeEeecccCccccCCcCEEEEccCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRKWI-GHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~~-~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      .||.|+|+ |.+|.+++..|..++. +++++++.++......   +.... ..........+-. ++..++|+||.+||.
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~   79 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP   79 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEeccc
Confidence            47999996 9999999999999885 4588888754322111   11100 0112223222221 236789999999997


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ..  ....+..+.+..|....+.++..+.+.+.  .++.+|
T Consensus        80 ~~--~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          80 RQ--KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             CC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             cc--CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            54  33456678889999999999999988876  555444

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.12  E-value=4.8e-06  Score=58.50  Aligned_cols=111  Identities=14%  Similarity=0.133  Sum_probs=70.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC---e---EEEEcCCCCCCcchhhh---cc---CCCceeEeecccCc-cccCCc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN---E---VIVVDNYFTGSKDNLRK---WI---GHPRFELIRHDVTE-PLLIEV   98 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~---~---V~~~~r~~~~~~~~~~~---~~---~~~~~~~~~~dl~~-~~~~~~   98 (259)
                      .+||.|+||+|++|++++..|...+.-   .   ...+..  ....+....   ..   .......+...-.+ .++++.
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   81 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI--PQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDA   81 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC--GGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc--ccchhhHcCchhhhhccccccccccccCCchhhhcccc
Confidence            469999999999999999999887531   1   122221  111111111   01   11223333332222 238899


Q ss_pred             CEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CC--eEEEEe
Q 025022           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTS  146 (259)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~~i~~S  146 (259)
                      |+||.++|...  ....+..+.+..|....+.+.+.+.+. +.  .++.+|
T Consensus        82 dvViitaG~~~--~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs  130 (154)
T d1y7ta1          82 DYALLVGAAPR--KAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG  130 (154)
T ss_dssp             SEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cEEEeecCcCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence            99999999754  345567788899999999999999885 33  555555

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.11  E-value=3.5e-06  Score=58.32  Aligned_cols=109  Identities=16%  Similarity=0.153  Sum_probs=68.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccC-----CCceeEe-ecccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELI-RHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~-~~dl~~~~~~~~d~vi~~a~  106 (259)
                      +||.|+|+ |.+|.+++-.|..++..++++++..+.........+..     ....... ..|..+  ..+.|+||.+||
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~--~~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD--TANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG--GTTCSEEEECCS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH--hcCCCEEEEeee
Confidence            68999996 99999999999988876688888755432211111110     1122222 233332  678999999999


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ...  ....+..+.+..|....+.++....+.+.  .++.+|
T Consensus        79 ~~~--~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt  118 (142)
T d1uxja1          79 APR--KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  118 (142)
T ss_dssp             CC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred             ccC--CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence            654  22344556778899999999999988765  555444

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=7.3e-06  Score=57.57  Aligned_cols=113  Identities=12%  Similarity=0.054  Sum_probs=73.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhc-----cCCCceeEeecccCccccCCcCEEE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKW-----IGHPRFELIRHDVTEPLLIEVDQIY  102 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~~~dl~~~~~~~~d~vi  102 (259)
                      .++..||.|+|+ |.+|.+++..|..+|.. +++.++++.........++     ...........|..  +..++|+||
T Consensus        16 ~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~--~~~~adivv   92 (159)
T d2ldxa1          16 KLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN--VSANSKLVI   92 (159)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG--GGTTEEEEE
T ss_pred             cCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh--hhccccEEE
Confidence            355678999995 99999999999999853 5888886543211111111     11112222233432  267999999


Q ss_pred             EccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      .+||....  ...+..+.++.|....+.++....+.+.  .++.+|
T Consensus        93 itag~~~~--~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt  136 (159)
T d2ldxa1          93 ITAGARMV--SGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT  136 (159)
T ss_dssp             ECCSCCCC--TTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred             EecccccC--CCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            99987543  2344556678899999999988888766  555555

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=1.7e-05  Score=50.48  Aligned_cols=90  Identities=21%  Similarity=0.209  Sum_probs=61.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc-chhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      +.++++|+|.|. |--|.++++.|.++|++ |++.+.+..... +.++     ....+..+...+..+.++|.||-.-|.
T Consensus         2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~-v~~~D~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~vi~SPGi   74 (93)
T d2jfga1           2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVT-PRVMDTRMTPPGLDKLP-----EAVERHTGSLNDEWLMAADLIVASPGI   74 (93)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHHTTCC-CEEEESSSSCTTGGGSC-----TTSCEEESBCCHHHHHHCSEEEECTTS
T ss_pred             CcCCCEEEEEeE-CHHHHHHHHHHHHCCCE-EEEeeCCcCchhHHHHh-----hccceeecccchhhhccCCEEEECCCC
Confidence            467899999996 77899999999999999 999887544322 2121     244455554444446688999987665


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEE
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL  143 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i  143 (259)
                      ...                  ..+++.+++.++.+|
T Consensus        75 ~~~------------------~~~~~~a~~~gi~ii   92 (93)
T d2jfga1          75 ALA------------------HPSLSAAADAGIEIV   92 (93)
T ss_dssp             CTT------------------SHHHHHHHHTTCEEE
T ss_pred             CCC------------------CHHHHHHHHcCCCeE
Confidence            321                  146677777776554

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.04  E-value=2.8e-05  Score=55.87  Aligned_cols=100  Identities=12%  Similarity=0.173  Sum_probs=57.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc-CCCCC-Ccchhhh----ccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTG-SKDNLRK----WIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~-r~~~~-~~~~~~~----~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |++|.|.|||||+|+.|++.|.++..-++..+. +.... ....+..    ............+..+....++|++|.+.
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al   80 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT   80 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence            579999999999999999999998443354443 22211 1112211    11111222222222222356889999876


Q ss_pred             CCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                      ...                  ....+...+.+.+.++|=.|+..
T Consensus        81 p~~------------------~s~~~~~~~~~~~~~vIDlSadf  106 (179)
T d2g17a1          81 AHE------------------VSHDLAPQFLQAGCVVFDLSGAF  106 (179)
T ss_dssp             CHH------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred             cch------------------hHHHHhhhhhhcCceeecccccc
Confidence            311                  11235556666777888888754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.02  E-value=1.3e-05  Score=55.70  Aligned_cols=113  Identities=14%  Similarity=0.130  Sum_probs=73.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhcc-----CCCceeEeecccCccccCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-----GHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      .+||.|.|+ |.+|++++..|...+..++++++++..........+.     ..........+ ...++.+.|+|+.++|
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~-~~~~~~~advvvitag   80 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN-TYDDLAGADVVIVTAG   80 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC-CGGGGTTCSEEEECCS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc-cccccCCCcEEEEecc
Confidence            468999995 9999999998888887778888875543221111110     01122222222 1223688999999999


Q ss_pred             CCCccc---cccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          107 PASPIF---YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       107 ~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ......   ...+....+..|....+.+++.+++...  .++.+|
T Consensus        81 ~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          81 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             cccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            654311   1224567788999999999999998876  455444

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.99  E-value=2.6e-05  Score=53.98  Aligned_cols=111  Identities=13%  Similarity=0.088  Sum_probs=69.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCCCCcch---hhhc--cCCCceeEeecccCccccCCcCEEEEccC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDN---LRKW--IGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~~---~~~~--~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |||.|+|+ |++|..++-.|+.+|. .+++.++.++......   +...  ...........|..  +++++|+||.+||
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~--~l~~adiVVitaG   78 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWA--ALADADVVISTLG   78 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGG--GGTTCSEEEECCS
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHH--HhccccEEEEecc
Confidence            78999995 9999999999999874 4588888754321111   1111  11122333334432  2789999999999


Q ss_pred             CCCccc--cccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          107 PASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       107 ~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      ......  ...+..+.+..|....+.+++..++.+.  .+|.+|
T Consensus        79 ~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             CGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             ccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            653211  1123345677899999999999988865  455444

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.95  E-value=5.9e-05  Score=49.73  Aligned_cols=95  Identities=15%  Similarity=0.125  Sum_probs=67.8

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      .+.++++|+|+|+ |.+|..-++.|++.|.. |+++.....   +.+..+....++++......+.++.+.+.|+.+.+.
T Consensus         8 l~l~~k~vlVvG~-G~va~~ka~~ll~~ga~-v~v~~~~~~---~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d   82 (113)
T d1pjqa1           8 CQLRDRDCLIVGG-GDVAERKARLLLEAGAR-LTVNALTFI---PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD   82 (113)
T ss_dssp             ECCBTCEEEEECC-SHHHHHHHHHHHHTTBE-EEEEESSCC---HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC
T ss_pred             EEeCCCEEEEECC-CHHHHHHHHHHHHCCCe-EEEEeccCC---hHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC
Confidence            3578999999995 99999999999999998 887765332   233333445678899888888888899988865421


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEE
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT  145 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~  145 (259)
                               .+    .    -..+.+.|++.++ +|++
T Consensus        83 ---------~~----~----n~~i~~~a~~~~i-lVNv  102 (113)
T d1pjqa1          83 ---------DT----V----NQRVSDAAESRRI-FCNV  102 (113)
T ss_dssp             ---------HH----H----HHHHHHHHHHTTC-EEEE
T ss_pred             ---------HH----H----HHHHHHHHHHcCC-EEEe
Confidence                     11    1    1357778888874 3443

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.91  E-value=3.3e-05  Score=54.00  Aligned_cols=113  Identities=16%  Similarity=0.109  Sum_probs=68.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCC-----C-eEEEEcCCCCCC-cchhhhc---cCCCceeEeec-ccCccccCCcCE
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEK-----N-EVIVVDNYFTGS-KDNLRKW---IGHPRFELIRH-DVTEPLLIEVDQ  100 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~-----~-~V~~~~r~~~~~-~~~~~~~---~~~~~~~~~~~-dl~~~~~~~~d~  100 (259)
                      .+||.|+||+|.+|++++-.|++.+.     . +++.++.+.... .+.+...   ........+.. +-..+.+.++|+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv   82 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV   82 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence            47999999999999999999986532     1 244444322111 1111110   11122222222 222233789999


Q ss_pred             EEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHh-CC--eEEEEe
Q 025022          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTS  146 (259)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~~i~~S  146 (259)
                      ||-++|...  ....+..+.+..|....+.+.....+. +.  .+|.+|
T Consensus        83 VVitag~~~--~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs  129 (154)
T d5mdha1          83 AILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG  129 (154)
T ss_dssp             EEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             EEEecccCC--CCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence            999998654  234455667889999999999988765 54  445444

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.88  E-value=0.00012  Score=50.40  Aligned_cols=94  Identities=17%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcC-CC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-cCCcCEEEEccCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENE-KN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLACPA  108 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g-~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~d~vi~~a~~~  108 (259)
                      |||.|.|||||+|+.|++.|+++. +.  ++..+..+..... .. ...  ... ....+..+.+ +.++|++|.+... 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk-~~-~~~--~~~-~~~~~~~~~~~~~~~DvvF~alp~-   74 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP-AP-NFG--KDA-GMLHDAFDIESLKQLDAVITCQGG-   74 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSB-CC-CSS--SCC-CBCEETTCHHHHTTCSEEEECSCH-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccc-cc-ccC--Ccc-eeeecccchhhhccccEEEEecCc-
Confidence            789999999999999999988753 22  3554443322111 11 110  011 1111222222 6789999987731 


Q ss_pred             CccccccChhHHHHHhhhhHHHHHHHHHHhCC--eEEEEecce
Q 025022          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSE  149 (259)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~Ss~~  149 (259)
                                       .....+...+.+.|.  .+|=.|+..
T Consensus        75 -----------------~~s~~~~~~l~~~g~~~~VIDlSsdf  100 (147)
T d1mb4a1          75 -----------------SYTEKVYPALRQAGWKGYWIDAASTL  100 (147)
T ss_dssp             -----------------HHHHHHHHHHHHTTCCSEEEESSSTT
T ss_pred             -----------------hHHHHHhHHHHHcCCceEEEeCCccc
Confidence                             112356666777776  366566543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.84  E-value=2.8e-06  Score=62.07  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=32.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      |||.|+||+|.+|++|++.|+++|++ |++..|+++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~-V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHE-IVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECCHH
Confidence            78999999999999999999999999 888898654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.82  E-value=7.4e-06  Score=57.74  Aligned_cols=75  Identities=19%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      ++++++|+|+|+ |-+|+.+++.|...|...+.+..|...+.....+.+    +......+-....+.++|+||.+.+..
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----~~~~~~~~~~~~~l~~~Divi~atss~   95 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----GGEAVRFDELVDHLARSDVVVSATAAP   95 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----TCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----hcccccchhHHHHhccCCEEEEecCCC
Confidence            467899999997 999999999999999976888888544333233222    333443332222367899999987643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.78  E-value=3e-05  Score=52.81  Aligned_cols=66  Identities=17%  Similarity=0.199  Sum_probs=50.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      |+++|+|. |.+|+++++.|.+.|+. |++++.++    +..+... ......+.+|.++++      ..++|.+|-+.
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~-vvvid~d~----~~~~~~~-~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~   72 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHE-VLAVDINE----EKVNAYA-SYATHAVIANATEENELLSLGIRNFEYVIVAI   72 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCC-CEEEESCH----HHHHHTT-TTCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCe-EEEecCcH----HHHHHHH-HhCCcceeeecccchhhhccCCccccEEEEEc
Confidence            57889986 99999999999999999 88888743    3333322 235667889998887      56788887655

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=1.7e-05  Score=56.14  Aligned_cols=35  Identities=23%  Similarity=0.194  Sum_probs=32.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (259)
                      |||+|+|+ |.+|..++..|.+.|++ |.++.|....
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~-V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHE-VQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSCCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCc-eEEEEcCHHH
Confidence            79999997 99999999999999998 9999987654

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=0.00011  Score=49.43  Aligned_cols=73  Identities=21%  Similarity=0.216  Sum_probs=51.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCccc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF  112 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~~~  112 (259)
                      |||.|.|++|-+|+.|++.+.++++..+..++++.                        ...+.++|++|....      
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~------------------------~~~~~~~DVvIDFS~------   50 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG------------------------VEELDSPDVVIDFSS------   50 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE------------------------EEECSCCSEEEECSC------
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc------------------------HHHhccCCEEEEecC------
Confidence            68999999999999999999988988343433210                        011457899997653      


Q ss_pred             cccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEec
Q 025022          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (259)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss  147 (259)
                                  -.++...++.|.++++.+|.=+|
T Consensus        51 ------------p~~~~~~l~~~~~~~~p~ViGTT   73 (128)
T d1vm6a3          51 ------------PEALPKTVDLCKKYRAGLVLGTT   73 (128)
T ss_dssp             ------------GGGHHHHHHHHHHHTCEEEECCC
T ss_pred             ------------HHHHHHHHHHHHhcCCCEEEEcC
Confidence                        23345788899999987654333

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.69  E-value=4.1e-05  Score=54.69  Aligned_cols=69  Identities=20%  Similarity=0.259  Sum_probs=45.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a  105 (259)
                      .|+|+|.|| |.+|+++++.|.++|++ |+++.|+........+ .+  ........+.....     ....|.++.+.
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~-V~v~dr~~~~a~~l~~-~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIK-VTVACRTLESAKKLSA-GV--QHSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCE-EEEEESCHHHHHHHHT-TC--TTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEECChHHHHHHHh-cc--cccccccccccchhhhHhhhhccceeEeec
Confidence            589999986 99999999999999998 9999996543332222 11  22223323332222     55677777654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.68  E-value=0.00022  Score=49.69  Aligned_cols=93  Identities=15%  Similarity=0.203  Sum_probs=54.1

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCcc
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~~  111 (259)
                      +|.|.|||||+|+.|++.|.++.+.  ++..+..+.. ....+..    ..-.....+..+.++.+.|.++.+++..   
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s-~G~~~~~----~~~~~~~~~~~~~~~~~~d~~f~~~~~~---   74 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS-AGKSLKF----KDQDITIEETTETAFEGVDIALFSAGSS---   74 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG-TTCEEEE----TTEEEEEEECCTTTTTTCSEEEECSCHH---
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc-ccccccc----cCCcccccccchhhhhhhhhhhhccCcc---
Confidence            7999999999999999999887543  3444432211 1111111    1112223344444467889888776421   


Q ss_pred             ccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecce
Q 025022          112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (259)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~  149 (259)
                                     ........+.+.+.++|=.|+..
T Consensus        75 ---------------~s~~~~~~~~~~~~~VIDlSsdf   97 (154)
T d2gz1a1          75 ---------------TSAKYAPYAVKAGVVVVDNTSYF   97 (154)
T ss_dssp             ---------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred             ---------------chhhHHhhhccccceehhcChhh
Confidence                           12234455556677888777654

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.59  E-value=6.2e-05  Score=54.20  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=28.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      .+..||.|.|||||.|+.|++.|.++.+.++..+..
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S   38 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTA   38 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEec
Confidence            356789999999999999999999876554655543

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00013  Score=54.16  Aligned_cols=73  Identities=15%  Similarity=0.156  Sum_probs=50.2

Q ss_pred             ccCCCEEEEEcC----------------chhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCc
Q 025022           29 FQSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE   92 (259)
Q Consensus        29 ~~~~~~vlItGa----------------tG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~   92 (259)
                      ++.+++||||+|                ||.+|.+|++++..+|+. |.++........        ...+..+...-.+
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~-V~li~g~~~~~~--------p~~~~~~~~~t~~   73 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGAN-VTLVSGPVSLPT--------PPFVKRVDVMTAL   73 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCE-EEEEECSCCCCC--------CTTEEEEECCSHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCc-hhhhhcccccCc--------ccccccceehhhH
Confidence            367888888865                688999999999999999 777765432211        1244444332211


Q ss_pred             cc-------cCCcCEEEEccCCCCc
Q 025022           93 PL-------LIEVDQIYHLACPASP  110 (259)
Q Consensus        93 ~~-------~~~~d~vi~~a~~~~~  110 (259)
                      +-       +.++|++|++|+....
T Consensus        74 ~m~~~~~~~~~~~D~~i~aAAvsDf   98 (223)
T d1u7za_          74 EMEAAVNASVQQQNIFIGCAAVADY   98 (223)
T ss_dssp             HHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred             HHHHHHHhhhccceeEeeeechhhh
Confidence            11       6789999999998764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.46  E-value=6.3e-05  Score=52.37  Aligned_cols=39  Identities=18%  Similarity=0.232  Sum_probs=34.7

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      +..+++|.|.||.|.+|+++++.|.+.|++ |.+.+++..
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~-V~~~d~~~~   44 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYP-ISILDREDW   44 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCC-EEEECTTCG
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCC-cEecccccc
Confidence            345689999999999999999999999999 999998643

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.44  E-value=7e-05  Score=53.33  Aligned_cols=34  Identities=21%  Similarity=0.412  Sum_probs=28.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      |+||.|.|||||+|+.|++.|.++...++..+..
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s   34 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSS   34 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeec
Confidence            5799999999999999999998876554666554

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=7.6e-05  Score=45.26  Aligned_cols=37  Identities=30%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      ++++|+|+||+|.+|...++.+...|++ |+++.++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~-Vi~~t~s~~   67 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGRES   67 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCe-EEEEECCHH
Confidence            4679999999999999999999999998 998887543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00033  Score=49.09  Aligned_cols=98  Identities=15%  Similarity=0.281  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCc-chhhhccCCCcee-EeecccCccccCCcCEEEEccCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSK-DNLRKWIGHPRFE-LIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~-~~~~~~~~~~~~~-~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      +.+||.|.|++|.+|+.+++.+.+. +.+.+.++.|...... ............. .+..|+ +.....+|++|...- 
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~-~~~~~~~DViIDFs~-   80 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSL-DAVKDDFDVFIDFTR-   80 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCS-TTTTTSCSEEEECSC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccH-HHHhcccceEEEecc-
Confidence            4579999999999999999999887 4453444444332211 1111111111111 112222 222568999997642 


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEec
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss  147 (259)
                                       -.++...++.|.++++.+|.=+|
T Consensus        81 -----------------p~~~~~~~~~a~~~~~~~ViGTT  103 (162)
T d1diha1          81 -----------------PEGTLNHLAFCRQHGKGMVIGTT  103 (162)
T ss_dssp             -----------------HHHHHHHHHHHHHTTCEEEECCC
T ss_pred             -----------------HHHHHHHHHHHHhccceeEEecC
Confidence                             23345688899999886664433

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00015  Score=51.44  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ..++++|+|+|+ |..+++++-.|.+.|.+ |+++.|+..+.....+.+.....+...  +..+....++|+|||+...
T Consensus        15 ~~~~k~vlIlGa-GGaarai~~al~~~g~~-i~I~nRt~~ka~~l~~~~~~~~~~~~~--~~~~~~~~~~dliIN~Tp~   89 (170)
T d1nyta1          15 IRPGLRILLIGA-GGASRGVLLPLLSLDCA-VTITNRTVSRAEELAKLFAHTGSIQAL--SMDELEGHEFDLIINATSS   89 (170)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSHHHHHHHHHHTGGGSSEEEC--CSGGGTTCCCSEEEECCSC
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHhcccceE-EEeccchHHHHHHHHHHHhhccccccc--ccccccccccceeeccccc
Confidence            356899999995 88899999999999987 999988654433333322222223333  3333335678999998743

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.33  E-value=6e-05  Score=53.66  Aligned_cols=69  Identities=14%  Similarity=0.048  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEcc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a  105 (259)
                      .+.+|+|+||+|.+|...++.+...|.+ |+++++++++. +..+++    +.+.+. |..+..     ..++|+||.+.
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~-vi~~~~~~~~~-~~~~~l----Ga~~~i-~~~~~~~~~~~~~g~D~v~d~~   99 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLR-VLAAASRPEKL-ALPLAL----GAEEAA-TYAEVPERAKAWGGLDLVLEVR   99 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCE-EEEEESSGGGS-HHHHHT----TCSEEE-EGGGHHHHHHHTTSEEEEEECS
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccc-ccccccccccc-cccccc----ccceee-ehhhhhhhhhcccccccccccc
Confidence            4689999999999999999999999998 88888754432 233332    222111 222211     56899999987


Q ss_pred             C
Q 025022          106 C  106 (259)
Q Consensus       106 ~  106 (259)
                      |
T Consensus       100 G  100 (171)
T d1iz0a2         100 G  100 (171)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.32  E-value=0.00025  Score=49.87  Aligned_cols=65  Identities=23%  Similarity=0.298  Sum_probs=42.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |||.|.| .|.+|+.+++.|.+.|++ |++.+|++.... ..++.   ..+....-++  ....++|+||.+.
T Consensus         1 MkI~iIG-~G~mG~~lA~~l~~~g~~-V~~~d~~~~~~~-~a~~~---~~~~~~~~~~--~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVG-LGLIGASLAGDLRRRGHY-LIGVSRQQSTCE-KAVER---QLVDEAGQDL--SLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCHHHHH-HHHHT---TSCSEEESCG--GGGTTCSEEEECS
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCCE-EEEEECCchHHH-HHHHh---hccceeeeec--ccccccccccccC
Confidence            7899997 599999999999999998 999988643222 11211   1122222222  1267899988754

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.30  E-value=0.001  Score=46.80  Aligned_cols=69  Identities=13%  Similarity=0.124  Sum_probs=44.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |++|+|.| .|.+|..+++.|.+.|+. +|++.+++.+..    +...+...+.....+........+|.||.+.
T Consensus         1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~dlIila~   70 (171)
T d2g5ca2           1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESI----SKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS   70 (171)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHH----HHHHHTTSCSEEESCGGGGGGTCCSEEEECS
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHH----HHHHHhhcchhhhhhhhhhhccccccccccC
Confidence            46799998 599999999999999864 488888753322    2211112233333344333345789998765

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.29  E-value=0.00022  Score=50.78  Aligned_cols=73  Identities=21%  Similarity=0.097  Sum_probs=47.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCcc----ccCCcCEEEEccCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP----LLIEVDQIYHLACP  107 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~----~~~~~d~vi~~a~~  107 (259)
                      +.+|||+||+|.+|...++.....|.+ |++..+++.+. +..+.+ ....+...+.+..+.    ..+++|+||.+.|.
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~Ga~-Viat~~s~~k~-~~~~~l-Ga~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg  108 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRGYT-VEASTGKAAEH-DYLRVL-GAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG  108 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCTTCH-HHHHHT-TCSEEEECC---------CCSCCEEEEEECSTT
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcCCc-eEEecCchHHH-HHHHhc-ccceeeecchhHHHHHHHhhccCcCEEEEcCCc
Confidence            578999999999999999999999999 88888765432 233332 111111111111111    14579999998874

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.23  E-value=0.00032  Score=50.22  Aligned_cols=72  Identities=15%  Similarity=0.039  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYH  103 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~  103 (259)
                      .+.+|+|+||+|.+|...++.....|.+ |+++.+++++ .+.+++. . ....+...|....+       ..++|+||+
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~-vi~~~~~~~~-~~~~~~~-G-a~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D  104 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCK-VVGAAGSDEK-IAYLKQI-G-FDAAFNYKTVNSLEEALKKASPDGYDCYFD  104 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESSHHH-HHHHHHT-T-CSEEEETTSCSCHHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCE-EEEeCCCHHH-HHHHHhh-h-hhhhcccccccHHHHHHHHhhcCCCceeEE
Confidence            4789999999999999999999999998 9998875432 2233332 1 11111111111111       467999999


Q ss_pred             ccC
Q 025022          104 LAC  106 (259)
Q Consensus       104 ~a~  106 (259)
                      +.|
T Consensus       105 ~vG  107 (182)
T d1v3va2         105 NVG  107 (182)
T ss_dssp             SSC
T ss_pred             ecC
Confidence            886

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.22  E-value=0.00028  Score=49.83  Aligned_cols=71  Identities=20%  Similarity=0.198  Sum_probs=47.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEccC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a~  106 (259)
                      +.+|||+||+|.+|...++.....|.+ |+++.+++++. +.++++- ...+ +..-|.....     ..++|+++.+.|
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~-Viat~~s~~k~-~~~~~lG-ad~v-i~~~~~~~~~~~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYD-VVASTGNREAA-DYLKQLG-ASEV-ISREDVYDGTLKALSKQQWQGAVDPVG   99 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCC-EEEEESSSSTH-HHHHHHT-CSEE-EEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCc-eEEEecCHHHH-HHHHhhc-ccce-EeccchhchhhhcccCCCceEEEecCc
Confidence            457999999999999999999999999 99998865432 3333331 1111 1111211111     457999999876

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00038  Score=48.28  Aligned_cols=69  Identities=17%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      .|+|+|. |-+|+.+++.|.+.|.. |+++...+........... ..++.++.+|.++++      ..+++.+|-+.
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~~~~-v~vId~d~~~~~~~~~~~~-~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~   79 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQRGQN-VTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             EEEEECC-CHHHHHHHHHHHHcCCC-EEEEeccchhHHHHHHHhh-cCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence            5899996 89999999999999999 8888764433222333322 257899999999988      67889998765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.14  E-value=0.0011  Score=46.66  Aligned_cols=36  Identities=25%  Similarity=0.140  Sum_probs=30.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .+.+|+|+| +|.+|...++.+...|.+ |+++++++.
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~-vi~v~~~~~   61 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAF-VVCTARSPR   61 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEESCHH
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhccc-ccccchHHH
Confidence            467899997 689999999999999987 999987543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.10  E-value=0.0039  Score=38.58  Aligned_cols=70  Identities=20%  Similarity=0.139  Sum_probs=48.2

Q ss_pred             CCEEEEEcCchhhh-HHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           32 NMRILVTGGAGFIG-SHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        32 ~~~vlItGatG~iG-~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      .|||.++|- |.+| +.|++.|.++|+. |.+.++......+.++.    .++.+..+.- ...+.+.|.||...+..
T Consensus         1 ~~~ihfiGI-gG~GMs~LA~~L~~~G~~-VsGSD~~~~~~t~~L~~----~Gi~i~~gh~-~~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           1 HMKIHFVGI-GGIGMSAVALHEFSNGND-VYGSNIEETERTAYLRK----LGIPIFVPHS-ADNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTCE-EEEECSSCCHHHHHHHH----TTCCEESSCC-TTSCCCCSEEEECTTCC
T ss_pred             CcEEEEEeE-CHHHHHHHHHHHHhCCCe-EEEEeCCCChhHHHHHH----CCCeEEeeec-ccccCCCCEEEEecCcC
Confidence            378999984 4455 6799999999999 99999875444444443    3666655422 12256789999987754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00047  Score=48.91  Aligned_cols=69  Identities=16%  Similarity=0.168  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+.+|+|+||+|.+|...++.+...|.+ |+++.+++.+ .+..+++ .  .-..+  |..+.+          ..++|+
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~-vi~~~~~~~~-~~~~~~~-G--a~~vi--~~~~~~~~~~i~~~t~~~g~d~  100 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLK-ILGTAGTEEG-QKIVLQN-G--AHEVF--NHREVNYIDKIKKYVGEKGIDI  100 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSHHH-HHHHHHT-T--CSEEE--ETTSTTHHHHHHHHHCTTCEEE
T ss_pred             CCCEEEEEeccccccccccccccccCcc-cccccccccc-ccccccc-C--ccccc--ccccccHHHHhhhhhccCCceE
Confidence            4679999999999999999999999998 8888875322 2233332 1  11222  222222          356899


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      ++.+.|
T Consensus       101 v~d~~g  106 (174)
T d1yb5a2         101 IIEMLA  106 (174)
T ss_dssp             EEESCH
T ss_pred             Eeeccc
Confidence            998875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.07  E-value=0.00039  Score=49.27  Aligned_cols=75  Identities=13%  Similarity=0.272  Sum_probs=48.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      .++++|+|.|+ |..+++++..|.+.+. +|+++.|+.++.....+.+.....+.....|  +.....+|++||+....
T Consensus        16 ~~~k~vlIlGa-GGaarai~~aL~~~~~-~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~--~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          16 RPNQHVLILGA-GGATKGVLLPLLQAQQ-NIVLANRTFSKTKELAERFQPYGNIQAVSMD--SIPLQTYDLVINATSAG   90 (171)
T ss_dssp             CTTCEEEEECC-SHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--GCCCSCCSEEEECCCC-
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHcccCc-eeeeccchHHHHHHHHHHHhhccccchhhhc--cccccccceeeeccccc
Confidence            46789999995 8889999999988664 5999998654433222222111233333333  33367899999987543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=8.3e-05  Score=53.70  Aligned_cols=35  Identities=23%  Similarity=0.131  Sum_probs=29.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      +.+|||+||+|.+|...++.....|.++|++++++
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~   65 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT   65 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccch
Confidence            36899999999999999999988998855555553

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.001  Score=43.25  Aligned_cols=64  Identities=17%  Similarity=0.200  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYH  103 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~  103 (259)
                      ...||.|+| +|++|+-++....+.|++ +++++.+++.....+       .-.++.+|..|.+       ..++|+|-.
T Consensus        10 ~~~kigIlG-gGQL~rMla~aA~~lG~~-v~v~d~~~~~PA~~v-------a~~~i~~~~~d~~~l~~~~~~~~~DviT~   80 (111)
T d1kjqa2          10 AATRVMLLG-SGELGKEVAIECQRLGVE-VIAVDRYADAPAMHV-------AHRSHVINMLDGDALRRVVELEKPHYIVP   80 (111)
T ss_dssp             TCCEEEEES-CSHHHHHHHHHHHTTTCE-EEEEESSTTCGGGGG-------SSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEEe-CCHHHHHHHHHHHHCCCE-EEEEcCCCCCchhhc-------CCeEEECCCCCHHHHHHHHHhhCCceEEE
Confidence            456899999 599999999999999999 999987655433222       2246778888877       135687753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.02  E-value=0.0015  Score=46.33  Aligned_cols=35  Identities=20%  Similarity=0.092  Sum_probs=31.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .|||.|+|+ |.+|..++..|.++|++ |.+++|++.
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~-V~~~~r~~~   35 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQS-VLAWDIDAQ   35 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSCHH
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCE-EEEEECCHH
Confidence            379999996 99999999999999998 999998643

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.00  E-value=0.00068  Score=48.38  Aligned_cols=69  Identities=14%  Similarity=0.124  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+.+|+|+||+|.+|...++.+...|.. |+++.+++++ .+.+++.    +.+.+ .|..+++          ..++|+
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~-vi~~~~~~~~-~~~l~~~----Ga~~v-i~~~~~~~~~~v~~~t~~~g~d~   97 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGAR-IYTTAGSDAK-REMLSRL----GVEYV-GDSRSVDFADEILELTDGYGVDV   97 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCE-EEEEESSHHH-HHHHHTT----CCSEE-EETTCSTHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEECCCCCcccccchhhcccccc-ceeeeccccc-ccccccc----ccccc-ccCCccCHHHHHHHHhCCCCEEE
Confidence            4679999999999999999999999998 8887765332 2333332    22221 1222222          357999


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      +|.+.|
T Consensus        98 v~d~~g  103 (183)
T d1pqwa_          98 VLNSLA  103 (183)
T ss_dssp             EEECCC
T ss_pred             EEeccc
Confidence            999886

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.95  E-value=0.00052  Score=48.37  Aligned_cols=68  Identities=12%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ++++|+|+|+ |..+++++..|.+.|...|.++.|+.++. +.+...+   ....+.    .....++|+|||+...
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka-~~L~~~~---~~~~~~----~~~~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTG-QYLAALY---GYAYIN----SLENQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHH-HHHHHHH---TCEEES----CCTTCCCSEEEECSST
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHH-HHHHHhh---hhhhhh----cccccchhhheecccc
Confidence            4689999996 99999999999999986688888864432 2233222   122211    1223578999997643

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00064  Score=48.62  Aligned_cols=78  Identities=8%  Similarity=-0.018  Sum_probs=51.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcch---hhhccCCCceeEeecccCccc-----cCCcCE
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LRKWIGHPRFELIRHDVTEPL-----LIEVDQ  100 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~~~dl~~~~-----~~~~d~  100 (259)
                      +.++++|+|+|+ |..|++++..|.+.|...++++.|+.......   .+.+...........++.+..     ...+|+
T Consensus        15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccce
Confidence            356799999996 88899999999999998788888865433211   111111112233344554433     467899


Q ss_pred             EEEccCC
Q 025022          101 IYHLACP  107 (259)
Q Consensus       101 vi~~a~~  107 (259)
                      |||+...
T Consensus        94 iIN~Tp~  100 (182)
T d1vi2a1          94 LTNGTKV  100 (182)
T ss_dssp             EEECSST
T ss_pred             eccccCC
Confidence            9998753

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.87  E-value=0.0057  Score=41.06  Aligned_cols=72  Identities=15%  Similarity=0.140  Sum_probs=47.2

Q ss_pred             EEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCCCccc
Q 025022           34 RILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF  112 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~~~~~  112 (259)
                      ||.|.|++|-+|+.+++.+.+. +.+.+.++++.. .    +                ......++|+||...-+     
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~-~----~----------------~~~~~~~~DvvIDFS~p-----   54 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD-P----L----------------SLLTDGNTEVVIDFTHP-----   54 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC-C----T----------------HHHHTTTCSEEEECCCT-----
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC-c----h----------------hhhccccCCEEEEcccH-----
Confidence            7899999999999999998776 455233333211 0    0                00113478999986632     


Q ss_pred             cccChhHHHHHhhhhHHHHHHHHHHhCCeEEE
Q 025022          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILL  144 (259)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~  144 (259)
                                   ..+...++.|.++++.+|.
T Consensus        55 -------------~~~~~~~~~~~~~~~~~Vi   73 (135)
T d1yl7a1          55 -------------DVVMGNLEFLIDNGIHAVV   73 (135)
T ss_dssp             -------------TTHHHHHHHHHHTTCEEEE
T ss_pred             -------------HHHHHHHHHHHhcCCCEEE
Confidence                         2334688899999986654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0037  Score=43.87  Aligned_cols=36  Identities=25%  Similarity=0.228  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+.+|+|+|+ |.+|...++.+...|..+|+++++++
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCH
Confidence            3568999986 99999999999999997688888753

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.77  E-value=0.002  Score=46.73  Aligned_cols=32  Identities=34%  Similarity=0.473  Sum_probs=29.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      |||.|.| .||+|..++..|.+.|++ |++++.+
T Consensus         1 MkI~ViG-lG~vGl~~a~~la~~g~~-V~g~D~n   32 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLSARGHE-VIGVDVS   32 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCE-EEEECSC
T ss_pred             CEEEEEC-CCHhHHHHHHHHHhCCCc-EEEEeCC
Confidence            7899996 799999999999999999 9999974

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.75  E-value=0.002  Score=42.60  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=31.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .++++|.|| |++|..++..|.++|.+ |.++.+.+.
T Consensus        30 ~~~vvIIGg-G~iG~E~A~~l~~~g~~-Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGG-GVIGLELAATARTAGVH-VSLVETQPR   64 (121)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             CCeEEEECc-chhHHHHHHHhhcccce-EEEEeeccc
Confidence            579999995 99999999999999998 999988754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00098  Score=47.33  Aligned_cols=69  Identities=16%  Similarity=0.108  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+.+|+|+||+|.+|..+++.+...|.+ |+++++++.+. +.++++ .  .-+.+  |..+++          -.++|+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~-Vi~~~~s~~k~-~~~~~l-G--a~~vi--~~~~~d~~~~v~~~t~g~g~d~  100 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKA-QSALKA-G--AWQVI--NYREEDLVERLKEITGGKKVRV  100 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCE-EEEEESSHHHH-HHHHHH-T--CSEEE--ETTTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCe-EeecccchHHH-HHHHhc-C--CeEEE--ECCCCCHHHHHHHHhCCCCeEE
Confidence            4679999999999999999999999998 99998764432 223332 1  11122  222222          356899


Q ss_pred             EEEccC
Q 025022          101 IYHLAC  106 (259)
Q Consensus       101 vi~~a~  106 (259)
                      ++.+.+
T Consensus       101 v~d~~g  106 (179)
T d1qora2         101 VYDSVG  106 (179)
T ss_dssp             EEECSC
T ss_pred             EEeCcc
Confidence            999886

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.70  E-value=0.0066  Score=43.01  Aligned_cols=37  Identities=19%  Similarity=0.127  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      +.+++|.|.| .|.||+.+++.|..-|.+ |++.++...
T Consensus        40 l~gk~vgIiG-~G~IG~~va~~l~~~g~~-v~~~d~~~~   76 (181)
T d1qp8a1          40 IQGEKVAVLG-LGEIGTRVGKILAALGAQ-VRGFSRTPK   76 (181)
T ss_dssp             CTTCEEEEES-CSTHHHHHHHHHHHTTCE-EEEECSSCC
T ss_pred             ccCceEEEec-cccccccceeeeeccccc-ccccccccc
Confidence            5689999999 599999999999999998 999988654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.0018  Score=45.90  Aligned_cols=37  Identities=30%  Similarity=0.327  Sum_probs=32.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (259)
                      +.+|+|+||+|.+|...++.....|.+ |+++.+++++
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~-Via~~~~~~k   68 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKLGYQ-VVAVSGREST   68 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCC-EEEEESCGGG
T ss_pred             CCcEEEEEccccchHHHHHHHHHcCCC-eEEEecchhH
Confidence            348999999999999999999999999 9998886544

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.67  E-value=0.036  Score=36.64  Aligned_cols=88  Identities=16%  Similarity=0.116  Sum_probs=54.7

Q ss_pred             cCCCEEEEEcCc---hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           30 QSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        30 ~~~~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      .+.++|.|.|+|   +..|..+.+.|.+.|.-.|+.+..+..    .+.      ++.. .-++.+. ...+|.++-+..
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~----~i~------G~~~-y~sl~dl-p~~vDlvvi~vp   73 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEE----EVQ------GVKA-YKSVKDI-PDEIDLAIIVVP   73 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCS----EET------TEEC-BSSTTSC-SSCCSEEEECSC
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcc----ccC------CeEe-ecchhhc-CCCCceEEEecC
Confidence            356899999998   889999999997766223888764211    111      1111 1223322 246898887552


Q ss_pred             CCCccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEec
Q 025022          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (259)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss  147 (259)
                                        -..+..+++.|.+.|+ .++.+|+
T Consensus        74 ------------------~~~~~~~~~~~~~~g~~~~vi~s~   97 (129)
T d2csua1          74 ------------------KRFVKDTLIQCGEKGVKGVVIITA   97 (129)
T ss_dssp             ------------------HHHHHHHHHHHHHHTCCEEEECCC
T ss_pred             ------------------hHHhHHHHHHHHHcCCCEEEEecc
Confidence                              2223467888888888 5666665

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.67  E-value=0.012  Score=36.81  Aligned_cols=71  Identities=13%  Similarity=0.035  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCchhhh-HHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           31 SNMRILVTGGAGFIG-SHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        31 ~~~~vlItGatG~iG-~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +.++|.+.|- |.+| ++|++.|.++|+. |.+.++......+.+.+    .++.+..++-.+. ..+.|.||...+..
T Consensus         7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~-VsGSD~~~~~~~~~L~~----~Gi~v~~g~~~~~-i~~~d~vV~S~AI~   78 (96)
T d1p3da1           7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQ-ISGSDIADGVVTQRLAQ----AGAKIYIGHAEEH-IEGASVVVVSSAIK   78 (96)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHHHHHTCE-EEEEESCCSHHHHHHHH----TTCEEEESCCGGG-GTTCSEEEECTTSC
T ss_pred             hCCEEEEEEE-CHHHHHHHHHHHHhCCCE-EEEEeCCCChhhhHHHH----CCCeEEECCcccc-CCCCCEEEECCCcC
Confidence            4578999984 4455 8889999999999 99999865443333433    3666665544333 57889999877653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.62  E-value=0.002  Score=45.25  Aligned_cols=72  Identities=21%  Similarity=0.244  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCce-eEeecccCccc--------cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRF-ELIRHDVTEPL--------LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~dl~~~~--------~~~~d~v  101 (259)
                      .+.+|+|+|++|.+|...++.+...|...|++.++++.+ .+..+++    +. ..+..+-.+..        .+++|++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~-~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~~~~d~v  101 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEA-VEAAKRA----GADYVINASMQDPLAEIRRITESKGVDAV  101 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHH-HHHHHHH----TCSEEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhh-HHHHHHc----CCceeeccCCcCHHHHHHHHhhcccchhh
Confidence            457999999999999999999999997658888875332 1222222    22 22222211111        3569999


Q ss_pred             EEccCC
Q 025022          102 YHLACP  107 (259)
Q Consensus       102 i~~a~~  107 (259)
                      |.++|.
T Consensus       102 id~~g~  107 (170)
T d1jvba2         102 IDLNNS  107 (170)
T ss_dssp             EESCCC
T ss_pred             hccccc
Confidence            998863

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.62  E-value=0.0079  Score=42.11  Aligned_cols=66  Identities=11%  Similarity=0.188  Sum_probs=39.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      |+.+||.|.| .|.+|+.+++.|.+. +.+ ++++..+......         .......+-.+....++|+|+.+..
T Consensus         1 M~kirvgiiG-~G~ig~~~~~~l~~~~~~e-lvav~~~~~~~~~---------~~~~~~~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           1 MTNIRVAIVG-YGNLGRSVEKLIAKQPDMD-LVGIFSRRATLDT---------KTPVFDVADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CCCEEEEEEC-CSHHHHHHHHHHTTCSSEE-EEEEEESSSCCSS---------SSCEEEGGGGGGTTTTCSEEEECSC
T ss_pred             CCcceEEEEC-ChHHHHHHHHHHHhCCCcE-EEEEEeccccccc---------ccccccchhhhhhccccceEEEeCC
Confidence            5667899999 699999999999876 444 5555433222111         1111111111222567999998764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.60  E-value=0.0023  Score=44.06  Aligned_cols=65  Identities=17%  Similarity=0.216  Sum_probs=42.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |+|.+.|+ |.+|+++++.|++.|..+|++.+|+.+... .+.+.   .++... .|.  .+..++|+||.+.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~-~l~~~---~~~~~~-~~~--~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRE-RLEKE---LGVETS-ATL--PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHH-HHHHH---TCCEEE-SSC--CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHH-Hhhhh---cccccc-ccc--ccccccceEEEec
Confidence            78999985 999999999999998445999988643332 22221   133322 122  2256789998754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.0031  Score=44.18  Aligned_cols=71  Identities=15%  Similarity=0.060  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCcee-Eee-cccCc---cccCCcCEEEEcc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFE-LIR-HDVTE---PLLIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~-~dl~~---~~~~~~d~vi~~a  105 (259)
                      .+.+|+|+|+ |.+|...++.+...|.+ |+++++++.+. +..+++    +.+ ++. .+..+   ....++|.++.+.
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~-vi~~~~~~~k~-~~a~~l----Ga~~~i~~~~~~~~~~~~~~~~d~vi~~~   99 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGAE-TYVISRSSRKR-EDAMKM----GADHYIATLEEGDWGEKYFDTFDLIVVCA   99 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCE-EEEEESSSTTH-HHHHHH----TCSEEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhcccc-ccccccchhHH-HHhhcc----CCcEEeeccchHHHHHhhhcccceEEEEe
Confidence            4679999986 99999999988888998 88888865432 233332    122 221 11111   1156789999987


Q ss_pred             CCC
Q 025022          106 CPA  108 (259)
Q Consensus       106 ~~~  108 (259)
                      +..
T Consensus       100 ~~~  102 (168)
T d1piwa2         100 SSL  102 (168)
T ss_dssp             SCS
T ss_pred             cCC
Confidence            643

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.48  E-value=0.0037  Score=44.36  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .+.+|+|+|+ |.+|...++.+...|...|+++++++.
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECC-Cccchhheecccccccccccccccccc
Confidence            4689999996 899999999999999865888887543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.44  E-value=0.00096  Score=46.11  Aligned_cols=64  Identities=13%  Similarity=0.106  Sum_probs=42.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |||.|.| .|.+|+.+++.|+++|+. |++..+............     +..  .+-.++....+|+||.+.
T Consensus         1 MkIgiIG-~G~mG~~ia~~l~~~g~~-v~~~~~~~~~~~~~~~~~-----~~~--~~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIG-FGEVAQTLASRLRSRGVE-VVTSLEGRSPSTIERART-----VGV--TETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCE-EEECCTTCCHHHHHHHHH-----HTC--EECCHHHHHTSSEEEECS
T ss_pred             CEEEEEc-HHHHHHHHHHHHHHCCCe-EEEEcCchhHHHHHhhhc-----ccc--cccHHHHHhhcCeEEEEe
Confidence            6899997 699999999999999998 888776544332222221     111  111222256799998765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0012  Score=46.34  Aligned_cols=70  Identities=11%  Similarity=0.096  Sum_probs=45.8

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEcc
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~a  105 (259)
                      .+.+|+|.|+ |.+|...++.+...|.+ +++++++..+ .+..+++    +.+.+ .|..+..     .+++|++|.+.
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~-~i~~~~~~~~-~~~a~~l----Gad~~-i~~~~~~~~~~~~~~~D~vid~~  101 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGAH-VVAFTTSEAK-REAAKAL----GADEV-VNSRNADEMAAHLKSFDFILNTV  101 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSGGG-HHHHHHH----TCSEE-EETTCHHHHHTTTTCEEEEEECC
T ss_pred             CCCEEEEecc-chHHHHHHHHhhccccc-chhhccchhH-HHHHhcc----CCcEE-EECchhhHHHHhcCCCceeeeee
Confidence            4689999986 88999999999989998 7777765432 2333332    22211 1222222     56799999998


Q ss_pred             CCC
Q 025022          106 CPA  108 (259)
Q Consensus       106 ~~~  108 (259)
                      |..
T Consensus       102 g~~  104 (168)
T d1uufa2         102 AAP  104 (168)
T ss_dssp             SSC
T ss_pred             ecc
Confidence            743

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0034  Score=52.38  Aligned_cols=105  Identities=8%  Similarity=0.095  Sum_probs=67.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~   87 (259)
                      +...+|+|.|+ |.+|.++++.|...|...+++++...-...                      +.+.++.+...++.+.
T Consensus        23 L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~  101 (529)
T d1yova1          23 LESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE  101 (529)
T ss_dssp             HHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES
T ss_pred             HhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEc
Confidence            44679999996 779999999999999887888765321110                      1122222223445555


Q ss_pred             cccCcc-----c-cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecceeec
Q 025022           88 HDVTEP-----L-LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (259)
Q Consensus        88 ~dl~~~-----~-~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~~~~~  152 (259)
                      .+..+.     + +.++|+||.+..                 |......+.+.|+++++.+|+.++.+.||
T Consensus       102 ~~~~~~~~~~~~~~~~~dvVv~~~~-----------------~~~~~~~l~~~c~~~~ip~i~~~~~G~~G  155 (529)
T d1yova1         102 ESPENLLDNDPSFFCRFTVVVATQL-----------------PESTSLRLADVLWNSQIPLLICRTYGLVG  155 (529)
T ss_dssp             SCHHHHHHSCGGGGGGCSEEEEESC-----------------CHHHHHHHHHHHHHHTCCEEEEEEETTEE
T ss_pred             CCchhhhhhHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEeccCCEE
Confidence            544321     1 567899987642                 23333467888999988898888876655

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.35  E-value=0.0098  Score=41.78  Aligned_cols=72  Identities=18%  Similarity=0.141  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEe-ecccCccc--------cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELI-RHDVTEPL--------LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~dl~~~~--------~~~~d~v  101 (259)
                      .+.+|+|.|+ |.+|...+..+...|..+|+++++++.+.. ..++. .  ....+ ..+..+..        ..++|++
T Consensus        28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~-~a~~~-G--a~~~i~~~~~~~~~~~~~~~~~~~G~D~v  102 (176)
T d2jhfa2          28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFA-KAKEV-G--ATECVNPQDYKKPIQEVLTEMSNGGVDFS  102 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHH-HHHHT-T--CSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHH-HHHHh-C--CeeEEecCCchhHHHHHHHHHhcCCCCEE
Confidence            4679999998 569999999999999876888887544322 22221 1  11122 12222211        4589999


Q ss_pred             EEccCC
Q 025022          102 YHLACP  107 (259)
Q Consensus       102 i~~a~~  107 (259)
                      |.+.|.
T Consensus       103 id~~G~  108 (176)
T d2jhfa2         103 FEVIGR  108 (176)
T ss_dssp             EECSCC
T ss_pred             EecCCc
Confidence            998874

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.33  E-value=0.0016  Score=45.39  Aligned_cols=65  Identities=14%  Similarity=0.132  Sum_probs=43.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |++|.+.| .|.+|..+++.|+++|++ |.+.+|+...... +...    .  ....+-..+....+|+++-+.
T Consensus         1 M~kIg~IG-lG~MG~~iA~~L~~~g~~-v~~~d~~~~~~~~-~~~~----~--~~~~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIG-LGHMGAPMATNLLKAGYL-LNVFDLVQSAVDG-LVAA----G--ASAARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHTTCE-EEEECSSHHHHHH-HHHT----T--CEECSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEE-EHHHHHHHHHHHHHCCCe-EEEEECchhhhhh-hhhh----h--ccccchhhhhccccCeeeecc
Confidence            46899997 799999999999999998 9999885433221 1111    1  111222222256789888765

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.015  Score=43.32  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      .++.+|+|.| .|.+|.+++..|...|...+++++..
T Consensus        28 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            3467999999 58899999999999999878887753

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.25  E-value=0.012  Score=41.28  Aligned_cols=72  Identities=14%  Similarity=0.066  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---------cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---------~~~~d~v  101 (259)
                      .+.+|+|+| .|.||...++.+...|..+|++.++++.+ .+..++ +.  ....+...-.+..         ..++|++
T Consensus        28 ~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r-~~~a~~-~G--a~~~i~~~~~~~~~~~~~~~~~~~G~d~v  102 (174)
T d1e3ia2          28 PGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEK-FPKAKA-LG--ATDCLNPRELDKPVQDVITELTAGGVDYS  102 (174)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGG-HHHHHH-TT--CSEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHH-HHHHHH-hC--CCcccCCccchhhhhhhHhhhhcCCCcEE
Confidence            467999997 49999999999999999867777775432 222222 21  1122222111111         4689999


Q ss_pred             EEccCC
Q 025022          102 YHLACP  107 (259)
Q Consensus       102 i~~a~~  107 (259)
                      |.+.|.
T Consensus       103 ie~~G~  108 (174)
T d1e3ia2         103 LDCAGT  108 (174)
T ss_dssp             EESSCC
T ss_pred             EEeccc
Confidence            999874

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.011  Score=47.82  Aligned_cols=75  Identities=15%  Similarity=0.123  Sum_probs=49.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc----------------------chhhhccCCCceeEee
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIR   87 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~   87 (259)
                      +++.||||.|+ |.+|.++++.|...|...+.+++...-...                      +.++......++..+.
T Consensus        35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            34679999997 669999999999999876888886421110                      1111122223455566


Q ss_pred             cccCccc---cCCcCEEEEcc
Q 025022           88 HDVTEPL---LIEVDQIYHLA  105 (259)
Q Consensus        88 ~dl~~~~---~~~~d~vi~~a  105 (259)
                      .++.+..   +.++|+||.+.
T Consensus       114 ~~i~~~~~~~~~~~DlVi~~~  134 (426)
T d1yovb1         114 NKIQDFNDTFYRQFHIIVCGL  134 (426)
T ss_dssp             SCGGGBCHHHHTTCSEEEECC
T ss_pred             ccccchHHHHHHhcchheecc
Confidence            5555543   67899999765

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.12  E-value=0.011  Score=41.68  Aligned_cols=37  Identities=14%  Similarity=0.226  Sum_probs=31.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~   70 (259)
                      +.+|.|.| .|.+|..+++.|++.|++ |++.+|++++.
T Consensus         2 ~~nIg~IG-lG~MG~~mA~~L~~~G~~-V~v~dr~~~~~   38 (176)
T d2pgda2           2 QADIALIG-LAVMGQNLILNMNDHGFV-VCAFNRTVSKV   38 (176)
T ss_dssp             CBSEEEEC-CSHHHHHHHHHHHHTTCC-EEEECSSTHHH
T ss_pred             CCcEEEEe-EhHHHHHHHHHHHHCCCe-EEEEcCCHHHH
Confidence            45788999 699999999999999999 99999865443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.11  E-value=0.014  Score=40.94  Aligned_cols=73  Identities=15%  Similarity=-0.015  Sum_probs=46.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCcc---c------cCCcCE
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---L------LIEVDQ  100 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~---~------~~~~d~  100 (259)
                      ..+.+|+|.|+ |.+|...++.+...|..+|+++++++.+. +..+++ .  ....+...-.|.   +      ..+.|+
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-~~a~~l-G--a~~~i~~~~~d~~~~~~~~~~~~~G~d~  100 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIEL-G--ATECLNPKDYDKPIYEVICEKTNGGVDY  100 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHT-T--CSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHH-HHHHHc-C--CcEEEcCCCchhHHHHHHHHhcCCCCcE
Confidence            34679999985 99999999999999987688888754332 222222 1  122222211121   1      357999


Q ss_pred             EEEccCC
Q 025022          101 IYHLACP  107 (259)
Q Consensus       101 vi~~a~~  107 (259)
                      +|.+.|.
T Consensus       101 vid~~g~  107 (174)
T d1p0fa2         101 AVECAGR  107 (174)
T ss_dssp             EEECSCC
T ss_pred             EEEcCCC
Confidence            9998863

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.10  E-value=0.009  Score=42.23  Aligned_cols=32  Identities=28%  Similarity=0.402  Sum_probs=29.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      |+|.|.|+ |..|.+++..|.++|++ |....|.
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~~-V~l~~r~   32 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGNE-VRIWGTE   32 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCCE-EEEECCG
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCE-EEEEEec
Confidence            79999995 99999999999999998 9998874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.07  E-value=0.0061  Score=42.88  Aligned_cols=72  Identities=14%  Similarity=0.118  Sum_probs=44.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYH  103 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~  103 (259)
                      .+.+|+|.|+ |.+|...++.+...|..+|++.++++. ..+..+++ .  ..+++..+-.+..       ..++|++|.
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~-k~~~a~~~-G--a~~~i~~~~~~~~~~i~~~t~gg~D~vid  102 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVES-RLELAKQL-G--ATHVINSKTQDPVAAIKEITDGGVNFALE  102 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHH-HHHHHHHH-T--CSEEEETTTSCHHHHHHHHTTSCEEEEEE
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHH-HHHHHHHc-C--CeEEEeCCCcCHHHHHHHHcCCCCcEEEE
Confidence            4679999987 999999999998999985666665332 22222332 1  1223322211111       346999999


Q ss_pred             ccCC
Q 025022          104 LACP  107 (259)
Q Consensus       104 ~a~~  107 (259)
                      +.|.
T Consensus       103 ~~G~  106 (174)
T d1f8fa2         103 STGS  106 (174)
T ss_dssp             CSCC
T ss_pred             cCCc
Confidence            9873

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0071  Score=41.38  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      .+++++|+|+|| |.+|..-++.|++.|.. |+++..
T Consensus        10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~-VtVvap   44 (150)
T d1kyqa1          10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCK-LTLVSP   44 (150)
T ss_dssp             CCTTCEEEEEEE-SHHHHHHHHHHGGGTCE-EEEEEE
T ss_pred             eeCCCEEEEECC-CHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467899999997 99999999999999998 887753

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.99  E-value=0.0026  Score=45.53  Aligned_cols=39  Identities=15%  Similarity=0.030  Sum_probs=31.2

Q ss_pred             CCEEEE-EcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc
Q 025022           32 NMRILV-TGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (259)
Q Consensus        32 ~~~vlI-tGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~   71 (259)
                      +.+++| .||+|.+|...++.....|.+ |+++.++.+...
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~-vI~~v~~~~~~~   68 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNFN-SISVIRDRPNLD   68 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTCE-EEEEECCCTTHH
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCCe-EEEEEecccccc
Confidence            456666 589999999999999999998 888887655443

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.97  E-value=0.013  Score=41.04  Aligned_cols=72  Identities=17%  Similarity=0.033  Sum_probs=45.1

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc---------cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~---------~~~~d~v  101 (259)
                      .+.+|+|.|+ |.+|...++.+...|..+|++.++++.+ .+..+++ .  .-..+..+-.+..         ..++|++
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k-~~~ak~l-G--a~~~i~~~~~~~~~~~~~~~~~~~g~D~v  102 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDK-FARAKEF-G--ATECINPQDFSKPIQEVLIEMTDGGVDYS  102 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGG-HHHHHHH-T--CSEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHH-HHHHHHh-C--CcEEEeCCchhhHHHHHHHHHcCCCCcEe
Confidence            4679999997 5789999999999998867777664332 2333332 1  1122222111111         4679999


Q ss_pred             EEccCC
Q 025022          102 YHLACP  107 (259)
Q Consensus       102 i~~a~~  107 (259)
                      |.+.|.
T Consensus       103 id~~G~  108 (176)
T d2fzwa2         103 FECIGN  108 (176)
T ss_dssp             EECSCC
T ss_pred             eecCCC
Confidence            998873

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.93  E-value=0.0018  Score=45.95  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=31.6

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~   70 (259)
                      |+|-|.| .|.+|..+++.|++.|++ |++.+|+.++.
T Consensus         2 MkIGvIG-lG~MG~~ma~~L~~~G~~-V~~~dr~~~~~   37 (178)
T d1pgja2           2 MDVGVVG-LGVMGANLALNIAEKGFK-VAVFNRTYSKS   37 (178)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTCC-EEEECSSHHHH
T ss_pred             CEEEEEe-ehHHHHHHHHHHHHCCCe-EEEEECCHHHH
Confidence            6899998 799999999999999999 99999865443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.92  E-value=0.006  Score=42.95  Aligned_cols=70  Identities=13%  Similarity=0.100  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc----------cCCcCE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVDQ  100 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~----------~~~~d~  100 (259)
                      .+.+|+|.|+ |.+|...++.+...|...|+++++++.+ .+..+++ .  -...+.  ..+.+          ..++|+
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r-~~~a~~l-G--a~~~i~--~~~~~~~~~v~~~t~g~G~D~   99 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPIC-VEAAKFY-G--ATDILN--YKNGHIEDQVMKLTNGKGVDR   99 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHH-HHHHHHH-T--CSEEEC--GGGSCHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEEcC-Ccchhhhhhhhhcccccccccccchhhh-HHHHHhh-C--cccccc--ccchhHHHHHHHHhhccCcce
Confidence            4678999986 9999999999999998658888875332 1222222 1  112221  11111          346999


Q ss_pred             EEEccCC
Q 025022          101 IYHLACP  107 (259)
Q Consensus       101 vi~~a~~  107 (259)
                      +|.++|.
T Consensus       100 vid~~g~  106 (174)
T d1jqba2         100 VIMAGGG  106 (174)
T ss_dssp             EEECSSC
T ss_pred             EEEccCC
Confidence            9999874

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.91  E-value=0.0073  Score=39.37  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=30.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .++++|.|| |++|..++..|.+.|.+ |.++.|.+.
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~~-Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGTK-VTILEGAGE   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             CCeEEEECC-CccceeeeeeecccccE-EEEEEecce
Confidence            479999995 99999999999999998 998887543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.91  E-value=0.011  Score=42.55  Aligned_cols=37  Identities=24%  Similarity=0.294  Sum_probs=32.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      ..+++|.|.| .|.||+.+++.|..-|.+ |++.++...
T Consensus        43 l~~ktvgIiG-~G~IG~~va~~l~~fg~~-v~~~d~~~~   79 (199)
T d1dxya1          43 LGQQTVGVMG-TGHIGQVAIKLFKGFGAK-VIAYDPYPM   79 (199)
T ss_dssp             GGGSEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSCC
T ss_pred             ccceeeeeee-ccccccccccccccccee-eeccCCccc
Confidence            5689999999 699999999999999998 999987544

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.82  E-value=0.012  Score=42.23  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=32.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      ..+++|.|.| .|.||+.+++.|..-|.+ |++.++..
T Consensus        41 l~gk~vgIiG-~G~IG~~va~~l~~fg~~-V~~~d~~~   76 (197)
T d1j4aa1          41 VRDQVVGVVG-TGHIGQVFMQIMEGFGAK-VITYDIFR   76 (197)
T ss_dssp             GGGSEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             ccCCeEEEec-ccccchhHHHhHhhhccc-ccccCccc
Confidence            6789999999 799999999999998998 99888653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.78  E-value=0.011  Score=41.33  Aligned_cols=72  Identities=13%  Similarity=0.011  Sum_probs=44.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-------cCCcCEEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYH  103 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-------~~~~d~vi~  103 (259)
                      .+.+|+|.|+ |.+|...++.+...|...|++.++++.+ .+..++.   .....+..+-.+.+       ..++|++|.
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k-~~~~~~~---ga~~~i~~~~~~~~~~~~~~~~~g~d~vid  106 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEK-LKLAERL---GADHVVDARRDPVKQVMELTRGRGVNVAMD  106 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHH-HHHHHHT---TCSEEEETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHH-HHHHhhc---ccceeecCcccHHHHHHHhhCCCCceEEEE
Confidence            4678999885 9999999999988898757777764322 2222222   12223322211111       346999999


Q ss_pred             ccCC
Q 025022          104 LACP  107 (259)
Q Consensus       104 ~a~~  107 (259)
                      ++|.
T Consensus       107 ~~g~  110 (172)
T d1h2ba2         107 FVGS  110 (172)
T ss_dssp             SSCC
T ss_pred             ecCc
Confidence            9873

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.77  E-value=0.014  Score=41.70  Aligned_cols=38  Identities=18%  Similarity=0.264  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (259)
                      ..++++.|.| .|-||+.+++.|..-|.+ |++.++....
T Consensus        47 L~gktvgIiG-~G~IG~~va~~l~~fg~~-v~~~d~~~~~   84 (193)
T d1mx3a1          47 IRGETLGIIG-LGRVGQAVALRAKAFGFN-VLFYDPYLSD   84 (193)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCE-EEEECTTSCT
T ss_pred             eeCceEEEec-cccccccceeeeeccccc-eeeccCcccc
Confidence            6789999998 699999999999999998 9998876443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.77  E-value=0.0098  Score=39.17  Aligned_cols=36  Identities=25%  Similarity=0.416  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      ..++|+|.|| |++|..++..|.+.|.+ |.++.+.+.
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~-Vtlie~~~~   64 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGKK-VTVIDILDR   64 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccceE-EEEEEecCc
Confidence            4679999985 99999999999999998 999887643

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0063  Score=43.61  Aligned_cols=37  Identities=22%  Similarity=0.369  Sum_probs=32.7

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      |.-++|.|.|+ |.+|+.++..++..|+. |+++++++.
T Consensus         2 ~~IkkvaViGa-G~mG~~iA~~~a~~G~~-V~l~D~~~~   38 (192)
T d1f0ya2           2 IIVKHVTVIGG-GLMGAGIAQVAAATGHT-VVLVDQTED   38 (192)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSCHH
T ss_pred             ceeEEEEEECc-CHHHHHHHHHHHhCCCc-EEEEECChH
Confidence            44579999997 99999999999999999 999998654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.71  E-value=0.0072  Score=39.48  Aligned_cols=35  Identities=14%  Similarity=0.263  Sum_probs=31.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .++|+|.|| |++|-.++..|.+.|.+ |.++.|.+.
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~-Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGID-SYIFARGNR   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCE-EEEECSSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhcccc-ceeeehhcc
Confidence            478999995 99999999999999998 999998654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.71  E-value=0.022  Score=39.95  Aligned_cols=72  Identities=17%  Similarity=0.093  Sum_probs=46.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEee-cccCc--cc------cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTE--PL------LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~dl~~--~~------~~~~d~v  101 (259)
                      .+.+|+|+|+ |.+|...++.+...|..+|+++++++.+.. ..+++ .  ....+. -|-.+  ..      ..++|++
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~-~Ak~~-G--A~~~in~~~~~~~~~~~~~~~~g~G~d~v  103 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFE-KAMAV-G--ATECISPKDSTKPISEVLSEMTGNNVGYT  103 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHH-HHHHH-T--CSEEECGGGCSSCHHHHHHHHHTSCCCEE
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHH-HHHhc-C--CcEEECccccchHHHHHHHHhccccceEE
Confidence            4678999985 999999999999999876999988554322 22222 1  111221 11111  11      4679999


Q ss_pred             EEccCC
Q 025022          102 YHLACP  107 (259)
Q Consensus       102 i~~a~~  107 (259)
                      |.+.|.
T Consensus       104 i~~~g~  109 (176)
T d1d1ta2         104 FEVIGH  109 (176)
T ss_dssp             EECSCC
T ss_pred             EEeCCc
Confidence            998864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.71  E-value=0.0054  Score=42.58  Aligned_cols=64  Identities=17%  Similarity=0.281  Sum_probs=42.9

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |||.|.| .|.+|+.+++.|+++|++ |++.+|++..... +..    .....  ++-..+...++|+||.+-
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~~~G~~-V~~~d~~~~~~~~-~~~----~~~~~--~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLLKAGYS-LVVSDRNPEAIAD-VIA----AGAET--ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCE-EEEECSCHHHHHH-HHH----TTCEE--CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEe-hhHHHHHHHHHHHHCCCe-EEEEeCCcchhHH-HHH----hhhhh--cccHHHHHhCCCeEEEEc
Confidence            6899998 699999999999999999 9999885433221 211    12211  111122256789998865

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.014  Score=40.46  Aligned_cols=38  Identities=13%  Similarity=0.221  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      +..+++|+|.|.+.-+|+.++..|.++|.+ |+......
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gat-Vt~~h~~t   71 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGCT-TTVTHRFT   71 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCE-EEEECSSC
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhcc-cccccccc
Confidence            467999999999999999999999999998 88776543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.69  E-value=0.0078  Score=39.62  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .++++|.|| |+||..++..|.+.|.+ |.++.+.+.
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~-Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSK-VTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcc-eeEEEeccc
Confidence            479999995 99999999999999999 999887543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.021  Score=40.54  Aligned_cols=64  Identities=13%  Similarity=0.009  Sum_probs=42.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc------chhhhccCCCceeEeecccCccc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK------DNLRKWIGHPRFELIRHDVTEPL   94 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~------~~~~~~~~~~~~~~~~~dl~~~~   94 (259)
                      ...+++|.|.| .|.||+.+++.|..-|.+ |+..++......      ..+++.+....+..+.+.+++..
T Consensus        41 ~l~~~~vgiiG-~G~IG~~va~~l~~fg~~-v~~~d~~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~~T  110 (188)
T d1sc6a1          41 EARGKKLGIIG-YGHIGTQLGILAESLGMY-VYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPST  110 (188)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred             cccceEEEEee-cccchhhhhhhcccccce-EeeccccccchhhhhhhhhhHHHHHhhccceeecccCCcch
Confidence            35689999998 799999999999988998 999987543222      11233333334445555555544

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.59  E-value=0.019  Score=36.63  Aligned_cols=38  Identities=24%  Similarity=0.207  Sum_probs=29.3

Q ss_pred             ccccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        27 ~~~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      ..+..+|+|+|.|+ |.-|.-++.+|.....+ ++...|+
T Consensus        27 ~~~f~gK~VlVVG~-g~Sa~dia~~l~~~ak~-v~~~~~r   64 (107)
T d2gv8a2          27 PELFVGESVLVVGG-ASSANDLVRHLTPVAKH-PIYQSLL   64 (107)
T ss_dssp             GGGGTTCCEEEECS-SHHHHHHHHHHTTTSCS-SEEEECT
T ss_pred             hhhcCCCeEEEECC-CCCHHHHHHHHHHhcCE-EEEEEec
Confidence            34467899999994 89999999999887776 4544444

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.58  E-value=0.0079  Score=43.10  Aligned_cols=32  Identities=34%  Similarity=0.504  Sum_probs=27.1

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      |||.|.| .||+|..++..| ++|++ |++++.++
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a~g~~-V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-SLQNE-VTIVDILP   32 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-TTTSE-EEEECSCH
T ss_pred             CEEEEEC-CChhHHHHHHHH-HCCCc-EEEEECCH
Confidence            7899997 899999999755 67998 99999754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.0097  Score=38.74  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=30.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .++++|.|| |++|..++..|.+.|.+ |.++.|.+.
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~-Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAK-THLFEMFDA   55 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccE-EEEEeecch
Confidence            378999995 99999999999999998 999988643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.52  E-value=0.014  Score=41.90  Aligned_cols=69  Identities=17%  Similarity=0.234  Sum_probs=45.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      +.++++|+|-| -|.+|+++++.|.+.|.+ |++.+.+.    ..+..... .+.+.+  +..+....+||+++-||.
T Consensus        24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gak-vvv~d~d~----~~~~~~~~-~g~~~~--~~~~~~~~~~DI~iPcA~   92 (201)
T d1c1da1          24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQ-LLVADTDT----ERVAHAVA-LGHTAV--ALEDVLSTPCDVFAPCAM   92 (201)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCH----HHHHHHHH-TTCEEC--CGGGGGGCCCSEEEECSC
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEEecchH----HHHHHHHh-hccccc--Cccccccccceeeecccc
Confidence            46789999998 799999999999999998 88776532    22221111 122222  112222457999998874

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.49  E-value=0.0098  Score=41.68  Aligned_cols=114  Identities=11%  Similarity=0.114  Sum_probs=61.9

Q ss_pred             CCEEEEEcCchhhhHH--HHHHHHhc-C--CCeEEEEcCCCCCCcch---hhhcc--CCCceeEeecccCccccCCcCEE
Q 025022           32 NMRILVTGGAGFIGSH--LVDKLMEN-E--KNEVIVVDNYFTGSKDN---LRKWI--GHPRFELIRHDVTEPLLIEVDQI  101 (259)
Q Consensus        32 ~~~vlItGatG~iG~~--l~~~L~~~-g--~~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~~~dl~~~~~~~~d~v  101 (259)
                      .|||.|.|| |.+|..  ++..|+.. .  ..+++.++.++......   +....  .....++...+-.++.+.++|+|
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V   80 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV   80 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence            579999996 888865  44445543 1  23499998864332110   11100  11233333333233347899999


Q ss_pred             EEccCCCCccccccChh------------------------HHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          102 YHLACPASPIFYKYNPV------------------------KTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~------------------------~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      +++++......+..+..                        .....|+...+.+++..++...  .+|.+|
T Consensus        81 v~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T  151 (171)
T d1obba1          81 INTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA  151 (171)
T ss_dssp             EECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             eeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence            99987543211110000                        0012477788888888888765  555554

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.46  E-value=0.0099  Score=39.06  Aligned_cols=34  Identities=29%  Similarity=0.476  Sum_probs=30.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .++++|.|| |++|-.++..|.+.|.+ |.++.+.+
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~-Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGYH-VKLIHRGA   65 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccce-EEEEeccc
Confidence            478999995 99999999999999998 88888754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.011  Score=39.05  Aligned_cols=35  Identities=14%  Similarity=0.175  Sum_probs=31.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .++++|.|| |++|-.++..|.+.|.+ |.++.|.+.
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~~-Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGSK-TSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCcE-EEEEeeccc
Confidence            479999995 99999999999999998 999998654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.39  E-value=0.015  Score=38.88  Aligned_cols=37  Identities=24%  Similarity=0.498  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (259)
                      ..++++|.|| |++|..++..|.+.|.+ |.++.+.+..
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~-Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANMH-VTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSSST
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCcc-eeeeeecccc
Confidence            3579999995 99999999999999998 9999886543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.39  E-value=0.015  Score=37.94  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .++++|.|| |+||-.++..|.+.|.+ |.++.+.+.
T Consensus        22 p~~i~IiG~-G~ig~E~A~~l~~~G~~-Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGA-GVIGLELGSVWARLGAE-VTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHHHHcCCc-eEEEEeecc
Confidence            479999995 99999999999999998 888887654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.33  E-value=0.032  Score=39.68  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=32.0

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      ..++++.|.| .|.||+.+++.+..-|.+ |++.++...
T Consensus        45 l~g~tvgIiG-~G~IG~~va~~l~~fg~~-v~~~d~~~~   81 (191)
T d1gdha1          45 LDNKTLGIYG-FGSIGQALAKRAQGFDMD-IDYFDTHRA   81 (191)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCE-EEEECSSCC
T ss_pred             ecccceEEee-cccchHHHHHHHHhhccc-ccccccccc
Confidence            5689999999 699999999999988998 888887543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.27  E-value=0.015  Score=37.69  Aligned_cols=35  Identities=29%  Similarity=0.362  Sum_probs=30.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .++++|.|| |++|-.++..|.+.|.+ |.++.+.+.
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~-Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQ-VSVVEARER   55 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCE-EEEECSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccc-eEEEeeecc
Confidence            478999985 99999999999999998 999887543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.27  E-value=0.0049  Score=44.06  Aligned_cols=36  Identities=22%  Similarity=0.154  Sum_probs=31.2

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      |.++||.|.|+ |..|.+++..|.++|++ |.+..|++
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~-V~l~~r~~   40 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCRE-VCVWHMNE   40 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEEE-EEEECSCH
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCCe-EEEEEecH
Confidence            45568999995 99999999999999998 99998854

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.21  E-value=0.037  Score=37.99  Aligned_cols=70  Identities=14%  Similarity=0.203  Sum_probs=37.4

Q ss_pred             CCEEEEEcCchhhhHHHH-HHHHhcCCCeEEEEc-CCCCCCcchhhhccCCCceeEeeccc----CccccCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLV-DKLMENEKNEVIVVD-NYFTGSKDNLRKWIGHPRFELIRHDV----TEPLLIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~-~~L~~~g~~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~dl----~~~~~~~~d~vi~~a  105 (259)
                      ..|+.|+| +|.+|+.+. +.|.+....+++++. |+.........+..   ++.+....+    .+.++.++|+||.+.
T Consensus         4 kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~---~i~~~~~~~d~l~~~~~~~~iDiVf~AT   79 (157)
T d1nvmb1           4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM---GVTTTYAGVEGLIKLPEFADIDFVFDAT   79 (157)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT---TCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred             CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhc---CCcccccceeeeeecccccccCEEEEcC
Confidence            36899999 899998654 554444443466654 43332221222211   333333221    222356799998754

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.027  Score=39.14  Aligned_cols=38  Identities=18%  Similarity=0.229  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      +..+++|.|.|-+.-+|+.|+..|.++|.. |.......
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gat-Vt~~~~~t   73 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNAT-VTTCHSKT   73 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCE-EEEECTTC
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccCc-eEEEeccc
Confidence            467999999999999999999999999998 88877643

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.16  E-value=0.011  Score=41.93  Aligned_cols=35  Identities=14%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      -++|.|.|+ |.+|+.++..++..|++ |++++++..
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~~-V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGTP-ILMKDINEH   38 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTCC-EEEECSSHH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCe-EEEEECCHH
Confidence            468999997 99999999999999999 999998644

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.14  E-value=0.014  Score=38.39  Aligned_cols=33  Identities=18%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      .++++|.|| |+||..++..|.+.|.+ |.++.|+
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~~-Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGLD-VTVMVRS   52 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCCe-EEEEEec
Confidence            368999995 99999999999999998 8888764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.13  E-value=0.0061  Score=43.02  Aligned_cols=75  Identities=15%  Similarity=0.142  Sum_probs=44.4

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc---cCCCceeEeecccCccccCCcCEEEEccC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      .++++|+|+|+ |..+++++..|.+.| + |+++.|+.++.......+   ........+..+-.+......|.+||+..
T Consensus        16 ~~~k~vlIlGa-GG~arai~~aL~~~~-~-i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          16 VKDKNIVIYGA-GGAARAVAFELAKDN-N-IIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHTSSS-E-EEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHcccc-c-eeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            56899999995 779999999996655 4 999988644332222111   11111111222222222567899999764


Q ss_pred             C
Q 025022          107 P  107 (259)
Q Consensus       107 ~  107 (259)
                      .
T Consensus        93 ~   93 (177)
T d1nvta1          93 I   93 (177)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.03  E-value=0.074  Score=36.90  Aligned_cols=72  Identities=15%  Similarity=0.077  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCcc---c------cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---L------LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~---~------~~~~d~v  101 (259)
                      .+.+|+|.|+ |.+|...+..+...+..+|+++++++.+. +..+++ .  --..+...-.+.   .      ..++|++
T Consensus        28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl-~~a~~~-G--Ad~~in~~~~~~~~~~~~~~~~~~G~d~v  102 (175)
T d1cdoa2          28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAKVF-G--ATDFVNPNDHSEPISQVLSKMTNGGVDFS  102 (175)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHT-T--CCEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred             CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHH-HHHHHc-C--CcEEEcCCCcchhHHHHHHhhccCCccee
Confidence            4678999996 55888888888888887688888754332 222222 1  122332211111   1      4579999


Q ss_pred             EEccCC
Q 025022          102 YHLACP  107 (259)
Q Consensus       102 i~~a~~  107 (259)
                      |.+.|.
T Consensus       103 id~~G~  108 (175)
T d1cdoa2         103 LECVGN  108 (175)
T ss_dssp             EECSCC
T ss_pred             eeecCC
Confidence            998874

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.99  E-value=0.012  Score=39.07  Aligned_cols=64  Identities=9%  Similarity=0.030  Sum_probs=45.2

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc------cCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~------~~~~d~vi~~a  105 (259)
                      |.++|+|. |-+|+.+++.|.  +.. |+++...+... +.+.    ..++.++.+|.++++      ..+++.+|-+.
T Consensus         1 kHivI~G~-g~~g~~l~~~L~--~~~-i~vi~~d~~~~-~~~~----~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLRELR--GSE-VFVLAEDENVR-KKVL----RSGANFVHGDPTRVSDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTSC--GGG-EEEEESCTTHH-HHHH----HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHc--CCC-CEEEEcchHHH-HHHH----hcCccccccccCCHHHHHHhhhhcCcEEEEec
Confidence            35888885 888999999994  555 66666543321 1222    247889999999988      67788888654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.90  E-value=0.044  Score=38.82  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      ..++++.|.| .|.||+.+++.|..-|.. |+..++...
T Consensus        42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~-v~~~d~~~~   78 (188)
T d2naca1          42 LEAMHVGTVA-AGRIGLAVLRRLAPFDVH-LHYTDRHRL   78 (188)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHGGGTCE-EEEECSSCC
T ss_pred             ccccceeecc-ccccchhhhhhhhccCce-EEEEeeccc
Confidence            5688999999 699999999999988988 999987543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.85  E-value=0.019  Score=37.80  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .++++|.|| |+||..++..|.+.|.+ |.++.+.+.
T Consensus        26 p~~vvIiGg-G~IG~E~A~~~~~~G~~-Vtive~~~~   60 (125)
T d1ojta2          26 PGKLLIIGG-GIIGLEMGTVYSTLGSR-LDVVEMMDG   60 (125)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHHTCE-EEEECSSSS
T ss_pred             CCeEEEECC-CHHHHHHHHHhhcCCCE-EEEEEeecc
Confidence            479999995 99999999999999998 999887653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.84  E-value=0.016  Score=38.12  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=31.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (259)
                      .++++|.|| |+||-.++..|.+.|.+ |.++.|.+..
T Consensus        25 p~~~viiG~-G~iglE~A~~~~~~G~~-Vtvi~~~~~~   60 (123)
T d1dxla2          25 PKKLVVIGA-GYIGLEMGSVWGRIGSE-VTVVEFASEI   60 (123)
T ss_dssp             CSEEEESCC-SHHHHHHHHHHHHHTCE-EEEECSSSSS
T ss_pred             CCeEEEEcc-chHHHHHHHHHHhcCCe-EEEEEEcccc
Confidence            478999995 99999999999999998 9999886543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.84  E-value=0.026  Score=41.33  Aligned_cols=71  Identities=14%  Similarity=0.120  Sum_probs=45.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      ++++++|+|-| -|-+|+++++.|.+.|.+ |++.+.+.    ..+.......+.+.+  +..+.....||+++-||-.
T Consensus        36 ~l~g~~v~IqG-~GnVG~~~a~~L~~~Gak-vv~~d~~~----~~~~~~~~~~g~~~~--~~~~~~~~~cDIl~PcA~~  106 (230)
T d1leha1          36 SLEGLAVSVQG-LGNVAKALCKKLNTEGAK-LVVTDVNK----AAVSAAVAEEGADAV--APNAIYGVTCDIFAPCALG  106 (230)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCH----HHHHHHHHHHCCEEC--CGGGTTTCCCSEEEECSCS
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEeecccH----HHHHHHHHhcCCccc--CCcccccccccEecccccc
Confidence            46789999999 699999999999999998 77776532    222221111122222  1112224578999988853

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.77  E-value=0.031  Score=39.28  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=26.3

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      |-||.|-| .|.||+.+++.|.+++.-+|+++..
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd   33 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK   33 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence            35899998 7999999999999886444666654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.76  E-value=0.098  Score=36.34  Aligned_cols=33  Identities=21%  Similarity=0.411  Sum_probs=25.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      .+||.|-| -|.||+.+++.|.++..-+++++..
T Consensus         2 ~irIaING-fGRIGR~v~Ral~~~~dieiVaINd   34 (172)
T d2czca2           2 KVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITK   34 (172)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred             cEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEec
Confidence            36899999 6999999999998875434655543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.72  E-value=0.026  Score=36.76  Aligned_cols=36  Identities=8%  Similarity=0.076  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .+++++|.|| |++|..++..|.+.|.+ |.++.+.+.
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~-vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGRR-TVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcchh-heEeeccch
Confidence            3589999995 99999999999999988 888887643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.72  E-value=0.024  Score=39.32  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~   67 (259)
                      .+|||+|.|| |+.|-.++..|.+.+.+ +|+++.+.+
T Consensus         1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            3789999995 99999999999998864 478777654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.66  E-value=0.018  Score=40.72  Aligned_cols=37  Identities=11%  Similarity=0.099  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .++||+|.|| |..|-..+..|.++|++.|+++.+++.
T Consensus         3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            3689999995 999999999999999854888887543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.64  E-value=0.0062  Score=41.85  Aligned_cols=65  Identities=18%  Similarity=0.287  Sum_probs=42.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      |||.+.| +|-+|+++++.|++.|++ +++..|+.++..+..+. .   ++.... |. ++...++|+||.+.
T Consensus         1 MkIg~IG-~G~mG~al~~~l~~~~~~-i~v~~r~~~~~~~l~~~-~---g~~~~~-~~-~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIG-VGKMASAIIKGLKQTPHE-LIISGSSLERSKEIAEQ-L---ALPYAM-SH-QDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTTSSCE-EEEECSSHHHHHHHHHH-H---TCCBCS-SH-HHHHHTCSEEEECS
T ss_pred             CEEEEEe-ccHHHHHHHHHHHhCCCe-EEEEcChHHhHHhhccc-c---ceeeec-hh-hhhhhccceeeeec
Confidence            6899997 699999999999999988 88888854433222222 1   222211 11 11156799988765

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.021  Score=34.10  Aligned_cols=34  Identities=21%  Similarity=0.046  Sum_probs=29.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      +|+|.|.| +|++|+-++.+-...|++ +++++...
T Consensus         1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~-v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLG-NGQLGRMLRQAGEPLGIA-VWPVGLDA   34 (78)
T ss_dssp             CEEEEEEB-CSHHHHHHHHHHGGGTEE-EEEECTTS
T ss_pred             CCEEEEEc-CCHHHHHHHHHHHHcCCE-EEEEcCCC
Confidence            47899999 599999999999999999 88888643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.42  E-value=0.023  Score=41.91  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=30.4

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .++|+|.|| |..|...+..|.++|++ |.++.|..
T Consensus         6 ~~kVvVIGa-GiaGl~~A~~L~~~G~~-V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGS-GVIGLSSALILARKGYS-VHILARDL   39 (268)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            468999995 99999999999999998 99998753

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.26  E-value=0.034  Score=38.68  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      +..+|+++|.|-+.-+|+.++..|+++|.. |......
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaT-Vt~~~~~   62 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGAT-VYSVDVN   62 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCE-EEEECSS
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCCE-EEEeccc
Confidence            578999999999999999999999999998 8776643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.23  E-value=0.073  Score=37.84  Aligned_cols=71  Identities=20%  Similarity=0.114  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEee----cccCccc-----cCCcCEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR----HDVTEPL-----LIEVDQI  101 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~----~dl~~~~-----~~~~d~v  101 (259)
                      .+.+|+|.|+ |.+|...++.+...|..+|+++++++.+. +..+++    +.+.+.    .|+.+..     ..++|++
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~~----Ga~~~~~~~~~~~~~~i~~~t~g~g~D~v   98 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKAQ----GFEIADLSLDTPLHEQIAALLGEPEVDCA   98 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHT----TCEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhh-Hhhhhc----cccEEEeCCCcCHHHHHHHHhCCCCcEEE
Confidence            4679999985 99998888888888887688887643221 222221    222221    1111111     3579999


Q ss_pred             EEccCC
Q 025022          102 YHLACP  107 (259)
Q Consensus       102 i~~a~~  107 (259)
                      |.+.|.
T Consensus        99 id~vG~  104 (195)
T d1kola2          99 VDAVGF  104 (195)
T ss_dssp             EECCCT
T ss_pred             EECccc
Confidence            999874

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.22  E-value=0.053  Score=38.24  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=31.6

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      ..++++.|.| .|.||+.+++.+..-|.+ |++.++...
T Consensus        42 l~~k~vgiiG-~G~IG~~va~~~~~fg~~-v~~~d~~~~   78 (184)
T d1ygya1          42 IFGKTVGVVG-LGRIGQLVAQRIAAFGAY-VVAYDPYVS   78 (184)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCE-EEEECTTSC
T ss_pred             ccceeeeecc-ccchhHHHHHHhhhccce-EEeecCCCC
Confidence            5678999999 699999999999988988 999887543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.89  E-value=0.065  Score=36.86  Aligned_cols=35  Identities=17%  Similarity=0.098  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+.+|+|.|+ |.+|...++.+...|.+ |+++++++
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~-Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLH-VAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCH
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCc-cceecchh
Confidence            4679999886 99999999999888987 99988753

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.86  E-value=0.064  Score=37.20  Aligned_cols=114  Identities=9%  Similarity=-0.016  Sum_probs=59.2

Q ss_pred             CEEEEEcC-chhhhHHHHHHHHhcC---CCeEEEEcCCCCCC-cchhhhc----cC--CCceeEeecccCccccCCcCEE
Q 025022           33 MRILVTGG-AGFIGSHLVDKLMENE---KNEVIVVDNYFTGS-KDNLRKW----IG--HPRFELIRHDVTEPLLIEVDQI  101 (259)
Q Consensus        33 ~~vlItGa-tG~iG~~l~~~L~~~g---~~~V~~~~r~~~~~-~~~~~~~----~~--~~~~~~~~~dl~~~~~~~~d~v  101 (259)
                      |||.|.|| +.+.+..++..+....   ..+++.++.++... .+.+...    ..  ..........-..+.+.+.|+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            68999996 4455555655555432   13588888754321 1111110    00  1122222221112226799999


Q ss_pred             EEccCCCCccccccC------------------hhHHHHHhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          102 YHLACPASPIFYKYN------------------PVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       102 i~~a~~~~~~~~~~~------------------~~~~~~~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      |.+|+......+..+                  .......|+...+.+++.+++...  .++.+|
T Consensus        82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt  146 (169)
T d1s6ya1          82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT  146 (169)
T ss_dssp             EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            999986542111100                  011223577778888888888766  555444

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=93.81  E-value=0.083  Score=36.69  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=26.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      |++|.|-| -|.||+.+.+.|.+++.-+++++..
T Consensus         1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd   33 (171)
T d1cf2o1           1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSK   33 (171)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred             CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEec
Confidence            46899998 7999999999998887544665553

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.04  Score=37.91  Aligned_cols=69  Identities=14%  Similarity=0.101  Sum_probs=47.2

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      .+.+|++.|+| .|.+|+.+++.|...|.+ |++....+..   .++...  .++.....   ++.....|++|-+.|.
T Consensus        21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~-V~v~e~dp~~---al~A~~--dG~~v~~~---~~a~~~adivvtaTGn   89 (163)
T d1li4a1          21 MIAGKVAVVAG-YGDVGKGCAQALRGFGAR-VIITEIDPIN---ALQAAM--EGYEVTTM---DEACQEGNIFVTTTGC   89 (163)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEECSCHHH---HHHHHH--TTCEECCH---HHHTTTCSEEEECSSC
T ss_pred             eecCCEEEEec-cccccHHHHHHHHhCCCe-eEeeecccch---hHHhhc--CceEeeeh---hhhhhhccEEEecCCC
Confidence            35789999999 899999999999999998 9999874322   222222  23333322   2225567888777664

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.62  E-value=0.49  Score=30.20  Aligned_cols=32  Identities=19%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             CEEEEEcCc---hhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           33 MRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        33 ~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      |+|.|.|+|   +-.|..+++.|++.|++ |+.+..
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~-V~pVnP   36 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFE-VLPVNP   36 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECT
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCE-EEEEcc
Confidence            689999988   66899999999999997 888753

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.53  E-value=0.43  Score=31.61  Aligned_cols=84  Identities=13%  Similarity=0.133  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCc---hhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCC
Q 025022           31 SNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (259)
Q Consensus        31 ~~~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~  107 (259)
                      +.++|.|.|++   +-.|..+++.|.+.|++ |+.+..+.    ..+.      +... .-++.+. ...+|.++-+.. 
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~-v~pVnP~~----~~i~------G~~~-~~sl~dl-p~~iD~v~i~vp-   83 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYD-VYPVNPKY----EEVL------GRKC-YPSVLDI-PDKIEVVDLFVK-   83 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTTC----SEET------TEEC-BSSGGGC-SSCCSEEEECSC-
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCE-EEEECCcc----cccC------CCcc-ccccccc-CccceEEEEEeC-
Confidence            35799999998   78999999999999997 88886421    1111      1111 1122222 235888776542 


Q ss_pred             CCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEE
Q 025022          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT  145 (259)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~  145 (259)
                                       -.....+++.|.+.|++.+.+
T Consensus        84 -----------------~~~~~~~~~e~~~~g~k~v~~  104 (139)
T d2d59a1          84 -----------------PKLTMEYVEQAIKKGAKVVWF  104 (139)
T ss_dssp             -----------------HHHHHHHHHHHHHHTCSEEEE
T ss_pred             -----------------HHHHHHHHHHHHHhCCCEEEE
Confidence                             223346788888888844433

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.50  E-value=0.056  Score=39.92  Aligned_cols=36  Identities=25%  Similarity=0.224  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      ..+||+|.|| |..|..++..|.++|++ |+++.+.+.
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~-v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGVD-VDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCCC-EEEEeCCCC
Confidence            3579999995 99999999999999998 999987543

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.058  Score=36.61  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=26.6

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcC--CCeEEEEcC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDN   65 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g--~~~V~~~~r   65 (259)
                      |++|.|+|+||.||....+-+.+..  ++ |+++.-
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~-v~~Lsa   35 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFR-VVALVA   35 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEE-EEEEEE
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcE-EEEEEe
Confidence            5689999999999999988887763  44 777764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.27  E-value=0.05  Score=41.85  Aligned_cols=34  Identities=29%  Similarity=0.523  Sum_probs=30.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      +|+|+|+|| |.-|...|..|.+.|++ |.++.+++
T Consensus         2 ~KKI~IIGa-G~sGL~aA~~L~k~G~~-V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGA-GFSGAVIGRQLAEKGHQ-VHIIDQRD   35 (314)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCE-EEEEESSS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhCCCC-EEEEECCC
Confidence            589999994 99999999999999998 88888654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.077  Score=37.15  Aligned_cols=36  Identities=17%  Similarity=0.171  Sum_probs=31.8

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      ...++|+|.|| |..|-..+..|.++|++ |.++.+.+
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~~-Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGHQ-VTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTCE-EEEEESSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhccc-eEEEeccC
Confidence            45689999995 99999999999999998 99998754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.15  E-value=0.051  Score=40.96  Aligned_cols=34  Identities=29%  Similarity=0.252  Sum_probs=30.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      +|||+|+|| |.-|...+..|.++|++ |.++.+++
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~-V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLN-VTVFEAEG   34 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCE-EEEECSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence            489999995 99999999999999998 99998754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.09  E-value=0.053  Score=40.44  Aligned_cols=31  Identities=32%  Similarity=0.500  Sum_probs=28.3

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      |+|.|| |..|.+++.+|.++|.+ |+++.+..
T Consensus         7 vvIIGa-Gi~Gls~A~~La~~G~~-V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGG-GIIGSAIAYYLAKENKN-TALFESGT   37 (276)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            999995 99999999999999998 99998754

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=92.97  E-value=0.044  Score=37.20  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=27.2

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhc--CCCeEEEEcCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNY   66 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~--g~~~V~~~~r~   66 (259)
                      +++|.|+|+||.||....+-+.+.  .++ |+++.-.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~-v~~lsa~   37 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQ-VIALTAN   37 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEE-EEEEEES
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcE-EEEEEeC
Confidence            579999999999999998888775  355 7777643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.95  E-value=0.1  Score=38.06  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      .+.++|+|.|| |..|...+..|.++|++ |.++.+.+.
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~~-v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGYT-VHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhccc-eeeEeeccc
Confidence            46789999995 99999999999999998 988887543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.93  E-value=0.091  Score=36.31  Aligned_cols=112  Identities=18%  Similarity=0.221  Sum_probs=57.3

Q ss_pred             CCEEEEEcCchhhhHH-HHHHHHhcCC----CeEEEEcCCCCCCc---chhhhccC--CCceeEeecccCccccCCcCEE
Q 025022           32 NMRILVTGGAGFIGSH-LVDKLMENEK----NEVIVVDNYFTGSK---DNLRKWIG--HPRFELIRHDVTEPLLIEVDQI  101 (259)
Q Consensus        32 ~~~vlItGatG~iG~~-l~~~L~~~g~----~~V~~~~r~~~~~~---~~~~~~~~--~~~~~~~~~dl~~~~~~~~d~v  101 (259)
                      ..||.|.|| |.+|.. ++..|+.+-.    .+++..+.++++..   ..++....  ..........-..+.+++.|+|
T Consensus         3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V   81 (167)
T d1u8xx1           3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV   81 (167)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred             CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence            468999998 555543 4455554321    25888887544322   11111000  1122322221122226899999


Q ss_pred             EEccCCCCccccccChhHHHH--------------------HhhhhHHHHHHHHHHhCC--eEEEEe
Q 025022          102 YHLACPASPIFYKYNPVKTIK--------------------TNVIGTLNMLGLAKRVGA--RILLTS  146 (259)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~--------------------~n~~~~~~l~~~~~~~~~--~~i~~S  146 (259)
                      |.++|......  ...++.+.                    .|+...+.+++..++...  .++.+|
T Consensus        82 vitag~~~~~g--~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~T  146 (167)
T d1u8xx1          82 MAHIRVGKYAM--RALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYS  146 (167)
T ss_dssp             EECCCTTHHHH--HHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             EECCCcCCCCc--eeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            99998754211  11122222                    245556677777777655  555554

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.12  Score=33.33  Aligned_cols=37  Identities=24%  Similarity=0.300  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCch----------hhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           31 SNMRILVTGGAG----------FIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        31 ~~~~vlItGatG----------~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      +.++|+|+|+..          |-+.+.++.|.+.|++ ++.+..++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~-~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE-TIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCE-EEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCe-EEEEecChh
Confidence            467999999743          6788999999999999 777776544

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.82  E-value=0.059  Score=40.45  Aligned_cols=33  Identities=21%  Similarity=0.466  Sum_probs=29.8

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      |+|+|+|| |.-|...+..|.++|++ |+++.+++
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~~-V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGTD-AVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTCC-EEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            68999996 99999999999999999 99998753

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.78  E-value=0.1  Score=39.44  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=30.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      .+.+++|+|-| -|.+|+++++.|.+.|.+ |+++..
T Consensus        33 ~L~gktvaIqG-fGnVG~~~A~~L~e~Gak-vv~vsD   67 (293)
T d1hwxa1          33 GFGDKTFAVQG-FGNVGLHSMRYLHRFGAK-CVAVGE   67 (293)
T ss_dssp             SSTTCEEEEEC-CSHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHCCCE-EEEEEc
Confidence            46789999999 599999999999999998 776653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.67  E-value=0.072  Score=36.20  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=28.6

Q ss_pred             CCEEEEE-cCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           32 NMRILVT-GGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        32 ~~~vlIt-GatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      ++.++|. .+.||+|..+++.|.++|.+ |.++.+..
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~-Vtlv~~~~   74 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHE-VTIVSGVH   74 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCe-EEEEecCC
Confidence            4566666 35699999999999999998 99988753

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.49  E-value=0.024  Score=39.20  Aligned_cols=74  Identities=19%  Similarity=0.290  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeeccc--CccccCCcCEEEEccCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV--TEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl--~~~~~~~~d~vi~~a~~~  108 (259)
                      ..-+|+|+|+ |-.|..-++.....|.. |.+++.+..... .++..+. ..++....+-  ..+.+.++|+||.++-..
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~-V~~~D~~~~~l~-~l~~~~~-~~~~~~~~~~~~l~~~~~~aDivI~aalip  106 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGAQ-VQIFDINVERLS-YLETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLVP  106 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCE-EEEEESCHHHHH-HHHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCCE-EEEEeCcHHHHH-HHHHhhc-ccceeehhhhhhHHHhhccCcEEEEeeecC
Confidence            3469999995 99999999999999998 999998543322 2222221 1233322221  122277899999988543

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.43  E-value=0.076  Score=36.52  Aligned_cols=75  Identities=25%  Similarity=0.325  Sum_probs=39.7

Q ss_pred             CEEEEEcCchhhhHHHHHH-HHhcC----CCeEEEEcCCCCCCcchh---hhccCCCceeEeecccCccccCCcCEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDK-LMENE----KNEVIVVDNYFTGSKDNL---RKWIGHPRFELIRHDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~-L~~~g----~~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~  104 (259)
                      |||.|.|| |.+|...+-. |+..-    ..+++.++.++.+.....   .... ..........-..++++++|+||.+
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~-~~~~~~~~t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLV-KDRFKVLISDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHH-TTSSEEEECSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhh-ccCceEEEecCcccccCCCCEEEEe
Confidence            78999997 5566555533 33221    235888887544322111   0011 1122222221122237899999999


Q ss_pred             cCCCC
Q 025022          105 ACPAS  109 (259)
Q Consensus       105 a~~~~  109 (259)
                      |+...
T Consensus        79 a~~~~   83 (162)
T d1up7a1          79 FRPGG   83 (162)
T ss_dssp             CCTTH
T ss_pred             cccCC
Confidence            98653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.42  E-value=0.27  Score=31.97  Aligned_cols=90  Identities=12%  Similarity=-0.048  Sum_probs=50.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHh-cCCCeEEEEcCC-CCCCcchhhhccCCCceeEeecccCccc-cCCcCEEEEccCCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLACPAS  109 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~-~g~~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~d~vi~~a~~~~  109 (259)
                      .+|+|.|| |.+|+.|++++.. .+++ ++++... +......+      .++.....|-.... ...++.++.+..   
T Consensus         4 ~~v~I~Ga-G~~G~~l~~~l~~~~~~~-iv~fiDdd~~k~G~~I------~Gi~V~~~~~l~~~~~~~i~iai~~i~---   72 (126)
T d2dt5a2           4 WGLCIVGM-GRLGSALADYPGFGESFE-LRGFFDVDPEKVGRPV------RGGVIEHVDLLPQRVPGRIEIALLTVP---   72 (126)
T ss_dssp             EEEEEECC-SHHHHHHHHCSCCCSSEE-EEEEEESCTTTTTCEE------TTEEEEEGGGHHHHSTTTCCEEEECSC---
T ss_pred             ceEEEEcC-CHHHHHHHHhHhhcCCcE-EEEEEeCchHhcCCEE------CCEEEecHHHHHHHHhhcccEEEEeCC---
Confidence            48999995 9999999998754 3666 5555443 22222211      24555443322221 344666555431   


Q ss_pred             ccccccChhHHHHHhhhhHHHHHHHHHHhCC-eEEEEecc
Q 025022          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS  148 (259)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~~Ss~  148 (259)
                                     ......+++.|.+.|+ .+..++..
T Consensus        73 ---------------~~~~~~I~d~l~~~gIk~I~~f~~~   97 (126)
T d2dt5a2          73 ---------------REAAQKAADLLVAAGIKGILNFAPV   97 (126)
T ss_dssp             ---------------HHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             ---------------HHHHHHHHHHHHHcCCCEEeecCce
Confidence                           1122457888888888 56655443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.41  E-value=0.09  Score=37.17  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=27.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC-eEEEEcCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF   67 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~-~V~~~~r~~   67 (259)
                      |||+|.|| |++|..++..|.+.+.. .|+++.|..
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999996 89999999999887543 377777653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.10  E-value=0.095  Score=39.94  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+.++|+|+|| |..|...+..|.++|++ |.++.+.+
T Consensus        28 ~~pkkV~IIGa-G~aGLsaA~~L~~~G~~-V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGA-GMAGLSAAYVLAGAGHQ-VTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECC-BHHHHHHHHHHHHHTCE-EEEECSSS
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            35679999995 99999999999999998 99998653

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=92.09  E-value=0.61  Score=30.66  Aligned_cols=34  Identities=21%  Similarity=0.129  Sum_probs=28.5

Q ss_pred             CCCEEEEEcCc---hhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           31 SNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        31 ~~~~vlItGat---G~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      +.++|.|.|+|   +-.|..+++.|.+.|+. ++.+.-
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~-~~~v~~   48 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYR-VLPVNP   48 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCE-EEEECG
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCC-ceEEEe
Confidence            45789999998   55899999999999998 777654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.97  E-value=0.085  Score=39.98  Aligned_cols=33  Identities=33%  Similarity=0.623  Sum_probs=28.4

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      +|+|.|| |.+|.+++.+|.++|..+|.++.++.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            6999995 99999999999999964499998763

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.70  E-value=0.28  Score=34.14  Aligned_cols=107  Identities=15%  Similarity=0.075  Sum_probs=52.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-cCCcCEEEEccCCCCcc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLACPASPI  111 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~d~vi~~a~~~~~~  111 (259)
                      +|+.|.| .|.+|+..++.|...+..+++++..........+......+...-+..|+.+.- ..++|+|+-+.......
T Consensus         2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~   80 (184)
T d1ydwa1           2 IRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV   80 (184)
T ss_dssp             EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred             eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc
Confidence            5899999 589999999999776433366554322111122222221111111222332211 35789888654321110


Q ss_pred             c-----cccC----hhHHHHHhhhhHHHHHHHHHHhCC
Q 025022          112 F-----YKYN----PVKTIKTNVIGTLNMLGLAKRVGA  140 (259)
Q Consensus       112 ~-----~~~~----~~~~~~~n~~~~~~l~~~~~~~~~  140 (259)
                      .     ....    .+.-+..+..-...+++.+++.+.
T Consensus        81 ~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~  118 (184)
T d1ydwa1          81 EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV  118 (184)
T ss_dssp             HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred             chhhhhhhccceeecccccccCHHHHHHHHHHHHhhCC
Confidence            0     0000    001112355566777788877765

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.55  E-value=0.1  Score=36.17  Aligned_cols=31  Identities=16%  Similarity=0.223  Sum_probs=25.8

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEE
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV   63 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~   63 (259)
                      .+++|+|.|| |++|-.++..|.+.|.+ +.++
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~-v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWE-GNIR   32 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCC-SEEE
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCc-eEEE
Confidence            3578999995 99999999999999987 4443

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.39  E-value=0.23  Score=33.57  Aligned_cols=36  Identities=14%  Similarity=0.054  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      -+++|+|.|| |..|...+..+++.|.+.|+++.|+.
T Consensus        44 ~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3568999985 99999999999999988788887764

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=91.27  E-value=0.41  Score=33.17  Aligned_cols=72  Identities=17%  Similarity=0.173  Sum_probs=38.0

Q ss_pred             cCCCEEEEEcCchhhhHH-HHHHHHhcCCC-eEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-cCCcCEEEEcc
Q 025022           30 QSNMRILVTGGAGFIGSH-LVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLA  105 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~-l~~~L~~~g~~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-~~~~d~vi~~a  105 (259)
                      |+..+|.|.| +|.+|+. .++.+.+.+.. +++++........+.+.....   ...+..|+.+.- ..++|+|+-+.
T Consensus         1 MkkirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~---~~~~~~~~~ell~~~~id~v~I~t   75 (181)
T d1zh8a1           1 LRKIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG---NPAVFDSYEELLESGLVDAVDLTL   75 (181)
T ss_dssp             CCCEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS---SCEEESCHHHHHHSSCCSEEEECC
T ss_pred             CCCcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccc---ccceeeeeeccccccccceeeccc
Confidence            4556899999 6899986 46667664432 366554332222222222222   222223332221 45789888654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.26  E-value=0.13  Score=38.31  Aligned_cols=31  Identities=23%  Similarity=0.408  Sum_probs=27.7

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      |+|.|| |..|..++.+|.++|.+ |+++.+..
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~~-V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGVK-TLLVDAFD   36 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCC-EEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            788985 99999999999999999 99988753

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.82  E-value=0.025  Score=41.35  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=23.3

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN   58 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~   58 (259)
                      |||+|+|| |-+|...+.+|.++|++
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC
Confidence            78999995 99999999999999986

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.53  E-value=0.26  Score=33.54  Aligned_cols=35  Identities=23%  Similarity=0.112  Sum_probs=29.3

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+.+|+|.|+ |.+|...++.+...|.+ |+++++++
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~-v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLN-VVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCe-EeccCCCH
Confidence            4678999875 99999999999988997 88888744

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.48  E-value=0.13  Score=38.54  Aligned_cols=32  Identities=16%  Similarity=0.251  Sum_probs=28.8

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      +|+|.|| |-.|..++..|.+.|++ |.++.+.+
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~-v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGID-NVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCC-EEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            6999996 89999999999999998 99998754

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=90.41  E-value=0.26  Score=33.72  Aligned_cols=68  Identities=18%  Similarity=0.155  Sum_probs=35.0

Q ss_pred             CEEEEEcCchhhhHH-HHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~-l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      +||.|.| .|.+|+. ....|.+.+..+++++++++.. ...+...+.   +.....|..+....++|+|+-+.
T Consensus         2 irvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~-~~~~~~~~~---~~~~~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNPKV-LGTLATRYR---VSATCTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCHHH-HHHHHHHTT---CCCCCSSTTGGGGGCCSEEEECS
T ss_pred             eEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECCHHH-HHHHHHhcc---cccccccHHHhcccccceecccc
Confidence            6899999 4788865 5566655544336655553222 222222221   22222333332224689888654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=0.14  Score=38.89  Aligned_cols=33  Identities=21%  Similarity=0.466  Sum_probs=28.7

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      ..|+|+|| |.-|..+++.|.+.|++ |.++.+++
T Consensus         2 ~dv~IIGa-G~sGl~~A~~L~~~g~~-V~iiEk~~   34 (298)
T d1i8ta1           2 YDYIIVGS-GLFGAVCANELKKLNKK-VLVIEKRN   34 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHGGGTCC-EEEECSSS
T ss_pred             ccEEEECC-cHHHHHHHHHHHhCCCc-EEEEECCC
Confidence            46899995 99999999999999998 88888654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=90.24  E-value=0.19  Score=36.88  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=30.6

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r   65 (259)
                      ++++++|+|-| -|-+|+++++.|.+.|.+ |+++..
T Consensus        28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gak-vv~vsD   62 (242)
T d1v9la1          28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAK-VIAVSD   62 (242)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHTTTCE-EEEEEC
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHcCCe-EEEeec
Confidence            46789999998 799999999999999998 776664

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.21  E-value=0.22  Score=31.82  Aligned_cols=35  Identities=20%  Similarity=0.199  Sum_probs=27.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhc---CCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMEN---EKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~---g~~~V~~~~r~~~   68 (259)
                      .++++|.|| |++|-.++..|.+.   |.. |.++.+.+.
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~-Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQ-VDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCE-EEEEESSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccc-cceeccccc
Confidence            479999995 99999999876554   666 888887643

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.93  E-value=0.81  Score=29.63  Aligned_cols=38  Identities=24%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             CCCEEEEEcCc----------hhhhHHHHHHHHhcCCCeEEEEcCCCCC
Q 025022           31 SNMRILVTGGA----------GFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (259)
Q Consensus        31 ~~~~vlItGat----------G~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (259)
                      +.++|+|+|+.          -|-+.+.++.|.+.|++ ++.+..++..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~-~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR-VINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE-EEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe-EEEecCchHh
Confidence            45899999983          35788999999999999 8877765443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.82  E-value=0.19  Score=36.58  Aligned_cols=34  Identities=21%  Similarity=0.428  Sum_probs=28.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .+|+|+|| |.-|...+..|.++|+++|+++.+++
T Consensus         1 P~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGA-GMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            37999995 99999999999999963388888754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.65  E-value=0.26  Score=36.31  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=29.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      ++|+|.|| |.-|..++..|.+.|...|.++.+.+.
T Consensus         2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            68999995 999999999999999644888887644

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.33  E-value=0.22  Score=35.87  Aligned_cols=31  Identities=26%  Similarity=0.356  Sum_probs=28.1

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      |+|+| +|.-|...+..|.++|++ |.++.+++
T Consensus         8 viViG-aG~~Gl~~A~~La~~G~~-V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLG-TGITECILSGLLSVDGKK-VLHIDKQD   38 (297)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHCCCC-EEEEcCCC
Confidence            78999 699999999999999998 99998864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.25  E-value=0.27  Score=37.36  Aligned_cols=34  Identities=15%  Similarity=0.305  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      +..||+|+|| |.-|-.-+..|.++|++ |.++-.+
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~-V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGMD-VTLLEAR   37 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCC-EEEEeCC
Confidence            3468999995 99999999999999998 8888764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=0.33  Score=32.02  Aligned_cols=35  Identities=31%  Similarity=0.325  Sum_probs=28.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHh----cCCCeEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLME----NEKNEVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~----~g~~~V~~~~r~~~   68 (259)
                      .++++|.|| |++|..++..|..    .|.+ |+.+.+.+.
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~-Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGTE-VIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTCE-EEEECSSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCCE-EEEeccccc
Confidence            578999985 9999999988853    4777 888877554

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.99  E-value=0.29  Score=35.06  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=47.0

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc---chhhhccCCCceeEeecccCccc--cCCcCEEEEc
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWIGHPRFELIRHDVTEPL--LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~dl~~~~--~~~~d~vi~~  104 (259)
                      .+++||-+| |||+....+++.+-.. .. |+++..++....   ..++. ....++.++.+|..+..  ...+|.|+..
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~-g~-V~~id~~~~~~~~a~~~~~~-~~~~n~~~~~~d~~~~~~~~~~fD~I~~~  151 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEK-GL-VVSVEYSRKICEIAKRNVER-LGIENVIFVCGDGYYGVPEFSPYDVIFVT  151 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-CE-EEEEESCHHHHHHHHHHHHH-TTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             ccceEEEecCccchhHHHHHHHhCCC-Cc-EEEeecchhhHHHhhhhHhh-hcccccccccCchHHccccccchhhhhhh
Confidence            467999887 7888777777766443 34 888887543211   11111 22356778888877644  4568999887


Q ss_pred             cCC
Q 025022          105 ACP  107 (259)
Q Consensus       105 a~~  107 (259)
                      ++.
T Consensus       152 ~~~  154 (213)
T d1dl5a1         152 VGV  154 (213)
T ss_dssp             SBB
T ss_pred             ccH
Confidence            754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.95  E-value=0.5  Score=34.08  Aligned_cols=78  Identities=14%  Similarity=0.221  Sum_probs=52.0

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCC---eEEEEcCCCCCCc---chhhh----ccCCCceeEeecccCccc--cCC
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKN---EVIVVDNYFTGSK---DNLRK----WIGHPRFELIRHDVTEPL--LIE   97 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~---~V~~~~r~~~~~~---~~~~~----~~~~~~~~~~~~dl~~~~--~~~   97 (259)
                      .+.+||..| ||||....+++.+...|..   +|+.+.+..+-..   ..+..    ..+..++.++.+|..+..  ...
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~  159 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAP  159 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCS
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccc
Confidence            467999999 7999988888888777741   3999887432111   11111    112247888899987644  457


Q ss_pred             cCEEEEccCCC
Q 025022           98 VDQIYHLACPA  108 (259)
Q Consensus        98 ~d~vi~~a~~~  108 (259)
                      +|.|+..++..
T Consensus       160 fD~Iiv~~a~~  170 (223)
T d1r18a_         160 YNAIHVGAAAP  170 (223)
T ss_dssp             EEEEEECSCBS
T ss_pred             eeeEEEEeech
Confidence            89998887653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.86  E-value=0.24  Score=33.75  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=46.9

Q ss_pred             cCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEccCCC
Q 025022           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (259)
Q Consensus        30 ~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~~~  108 (259)
                      +.+|+++|.| -|++|+.+++.|...|.. |+++..++-.   .++..+  .+++....+   +..+..|++|-+.|..
T Consensus        21 laGk~vvV~G-YG~vGrG~A~~~rg~Ga~-V~V~E~DPi~---alqA~m--dGf~v~~~~---~a~~~aDi~vTaTGn~   89 (163)
T d1v8ba1          21 ISGKIVVICG-YGDVGKGCASSMKGLGAR-VYITEIDPIC---AIQAVM--EGFNVVTLD---EIVDKGDFFITCTGNV   89 (163)
T ss_dssp             CTTSEEEEEC-CSHHHHHHHHHHHHHTCE-EEEECSCHHH---HHHHHT--TTCEECCHH---HHTTTCSEEEECCSSS
T ss_pred             ecCCEEEEec-ccccchhHHHHHHhCCCE-EEEEecCchh---hHHHHh--cCCccCchh---HccccCcEEEEcCCCC
Confidence            5689999999 799999999999999998 9998874322   222222  344443322   2245667777766644

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.81  E-value=0.26  Score=37.85  Aligned_cols=37  Identities=16%  Similarity=0.264  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCC-CeEEEEcCCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFT   68 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~   68 (259)
                      .+|+|+|.|| |.-|...+..|+++|. ..|+++.+++.
T Consensus         3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            3578999995 9999999999998874 23888888643

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.75  E-value=0.27  Score=34.99  Aligned_cols=30  Identities=13%  Similarity=0.144  Sum_probs=24.5

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~   64 (259)
                      |||++.|. +..|..+.+.|++.|++ |.++.
T Consensus         1 Mkiv~~~~-~~~g~~~l~~L~~~g~~-I~~Vv   30 (203)
T d2blna2           1 MKTVVFAY-HDMGCLGIEALLAAGYE-ISAIF   30 (203)
T ss_dssp             CEEEEEEC-HHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CeEEEEec-CHHHHHHHHHHHHCCCC-EEEEE
Confidence            78899974 66899999999999998 65544

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=88.55  E-value=0.31  Score=35.26  Aligned_cols=72  Identities=17%  Similarity=0.108  Sum_probs=44.9

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc--cCCcCEEEEccCC
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--LIEVDQIYHLACP  107 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~d~vi~~a~~  107 (259)
                      .+++||-.| |+||+-..+++    .+.+ |+++...+......-+......++.++.+|...-.  ...+|.|+..++.
T Consensus        70 ~g~~VLdIG~GsGy~ta~La~----l~~~-V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~  144 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTALIAE----IVDK-VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATA  144 (224)
T ss_dssp             TTCEEEEECCTTSHHHHHHHH----HSSE-EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred             ccceEEEecCCCCHHHHHHHH----Hhcc-cccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcch
Confidence            467999888 77776544433    3455 99988754322211111223467889999876633  4568999887764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.55  E-value=0.24  Score=31.66  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=27.0

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCC--eEEEEcCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFT   68 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~   68 (259)
                      .++++|.|| |++|-.++..|.+.+..  .|.++.+.+.
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            479999996 99999999877665432  3888877543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.42  E-value=0.25  Score=33.46  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=25.4

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      ||+|.|| |++|..++..|. ++.+ |.++.+.+
T Consensus         2 rVvIIGg-G~~G~e~A~~l~-~~~~-Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLS-QTYE-VTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHT-TTSE-EEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHH-cCCC-EEEEeccc
Confidence            7899995 999999999985 4666 88887653

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.35  E-value=0.49  Score=33.93  Aligned_cols=73  Identities=22%  Similarity=0.302  Sum_probs=47.8

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCC---CcchhhhccCCCceeEeecccCccc--cCCcCEEEEc
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTG---SKDNLRKWIGHPRFELIRHDVTEPL--LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~dl~~~~--~~~~d~vi~~  104 (259)
                      .+.+||..| ||||....+++..   |.. |+++.+.+.-   ....++. ....++.++.+|..+-.  ...+|.|+-.
T Consensus        78 ~g~~VLeIGsGsGY~taila~l~---g~~-V~~ie~~~~l~~~a~~~l~~-~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~  152 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAALISEIV---KTD-VYTIERIPELVEFAKRNLER-AGVKNVHVILGDGSKGFPPKAPYDVIIVT  152 (215)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHH---CSC-EEEEESCHHHHHHHHHHHHH-TTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             ccceEEEecCCCChhHHHHHHhh---Cce-eEEEeccHHHHHHHHHHHHH-cCCceeEEEECccccCCcccCcceeEEee
Confidence            367899888 7788776665543   455 8888875321   1122222 23468999999987744  5678999887


Q ss_pred             cCCC
Q 025022          105 ACPA  108 (259)
Q Consensus       105 a~~~  108 (259)
                      ++..
T Consensus       153 ~a~~  156 (215)
T d1jg1a_         153 AGAP  156 (215)
T ss_dssp             SBBS
T ss_pred             cccc
Confidence            7654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=88.16  E-value=0.23  Score=36.69  Aligned_cols=34  Identities=15%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~   64 (259)
                      ++++++|+|-| .|-+|+++++.|.+.|.+ |+++.
T Consensus        33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~Gak-vvavs   66 (255)
T d1bgva1          33 TLVGKTVALAG-FGNVAWGAAKKLAELGAK-AVTLS   66 (255)
T ss_dssp             CSTTCEEEECC-SSHHHHHHHHHHHHHTCE-EEEEE
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHcCCe-EEEEe
Confidence            36789999999 699999999999999998 66664

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.02  E-value=0.28  Score=35.49  Aligned_cols=72  Identities=13%  Similarity=0.138  Sum_probs=45.2

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhh-------------------ccCCCceeEeeccc
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-------------------WIGHPRFELIRHDV   90 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~-------------------~~~~~~~~~~~~dl   90 (259)
                      .+.+||..| |+|..    +..|+++|++ |++++-++.......+.                   ......++++.+|+
T Consensus        45 ~~~rvLd~GCG~G~~----a~~LA~~G~~-V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~  119 (229)
T d2bzga1          45 SGLRVFFPLCGKAVE----MKWFADRGHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI  119 (229)
T ss_dssp             CSCEEEETTCTTCTH----HHHHHHTTCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred             CCCEEEEeCCCCcHH----HHHHHhCCCc-EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence            567999999 55554    4555678998 99998754321110000                   01134788899998


Q ss_pred             Cccc---cCCcCEEEEccCC
Q 025022           91 TEPL---LIEVDQIYHLACP  107 (259)
Q Consensus        91 ~~~~---~~~~d~vi~~a~~  107 (259)
                      .+..   ...+|+|+..+..
T Consensus       120 ~~l~~~~~~~fd~i~~~~~l  139 (229)
T d2bzga1         120 FDLPRTNIGKFDMIWDRGAL  139 (229)
T ss_dssp             GGGGGSCCCCEEEEEESSST
T ss_pred             hhccccccCceeEEEEEEEE
Confidence            7765   4467888766543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.90  E-value=0.39  Score=33.95  Aligned_cols=69  Identities=13%  Similarity=0.044  Sum_probs=46.1

Q ss_pred             cccCCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEc
Q 025022           28 FFQSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHL  104 (259)
Q Consensus        28 ~~~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~  104 (259)
                      .+..+++|+=.| |||.+|.    .+...|...|++++.++... +..+..  ...++++.+|+.+.. .++|+||.+
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i----~a~~~ga~~V~~vDid~~a~-~~ar~N--~~~~~~~~~D~~~l~-~~fD~Vi~N  114 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILAC----GSYLLGAESVTAFDIDPDAI-ETAKRN--CGGVNFMVADVSEIS-GKYDTWIMN  114 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHH----HHHHTTBSEEEEEESCHHHH-HHHHHH--CTTSEEEECCGGGCC-CCEEEEEEC
T ss_pred             CCCCCCEEEEeCCCCcHHHH----HHHHcCCCcccccccCHHHH-HHHHHc--cccccEEEEehhhcC-CcceEEEeC
Confidence            345789999998 6676653    35556766699998753321 112221  246889999997754 679999976

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=87.61  E-value=0.38  Score=35.38  Aligned_cols=72  Identities=24%  Similarity=0.272  Sum_probs=50.3

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc---chhhhccCCCceeEeecccCccc-cCCcCEEEEc
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~dl~~~~-~~~~d~vi~~  104 (259)
                      .+++||=.| |+|++..++++.+...| . |+++++++....   +.++......++++..+|+.+.. ...+|.|+..
T Consensus        85 pG~rVLEiG~GsG~lt~~la~~v~~~g-~-V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld  161 (250)
T d1yb2a1          85 PGMDILEVGVGSGNMSSYILYALNGKG-T-LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD  161 (250)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSS-E-EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred             CcCEEEEeeeeCcHHHHHHHHHhCCCc-E-EEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeec
Confidence            468999999 78989999988875444 4 999988654222   22333333468899999998754 4568988864

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=87.59  E-value=1.7  Score=30.96  Aligned_cols=107  Identities=11%  Similarity=0.061  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCchhhhH-HHHHHHHhc-CCCeEEEEc-CCCCCCcchhhhccCCCcee-EeecccCccc-cCCcCEEEEcc
Q 025022           31 SNMRILVTGGAGFIGS-HLVDKLMEN-EKNEVIVVD-NYFTGSKDNLRKWIGHPRFE-LIRHDVTEPL-LIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItGatG~iG~-~l~~~L~~~-g~~~V~~~~-r~~~~~~~~~~~~~~~~~~~-~~~~dl~~~~-~~~~d~vi~~a  105 (259)
                      +.-+|.|.| .|.+|+ +++..+... +.+ |+++. ++... .+.+.+.+..+... ....|+.+.- ..++|+|+-+.
T Consensus        32 ~~iriaiIG-~G~~~~~~~~~~~~~~~~~~-ivav~d~~~~~-a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t  108 (221)
T d1h6da1          32 RRFGYAIVG-LGKYALNQILPGFAGCQHSR-IEALVSGNAEK-AKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL  108 (221)
T ss_dssp             CCEEEEEEC-CSHHHHHTHHHHTTTCSSEE-EEEEECSCHHH-HHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred             CCEEEEEEc-CcHHHHHHHHHHHHhCCCce-EEEEecCCHHH-HHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence            345899999 589986 566666554 454 66554 43222 22222222111111 1122322211 35789888655


Q ss_pred             CCCCccc-----cccC----hhHHHHHhhhhHHHHHHHHHHhCC
Q 025022          106 CPASPIF-----YKYN----PVKTIKTNVIGTLNMLGLAKRVGA  140 (259)
Q Consensus       106 ~~~~~~~-----~~~~----~~~~~~~n~~~~~~l~~~~~~~~~  140 (259)
                      .......     ....    .+.=+..+......+.+.++++++
T Consensus       109 p~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~  152 (221)
T d1h6da1         109 PNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK  152 (221)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred             chhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCC
Confidence            4322100     0000    000112466667788888888876

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=87.47  E-value=0.52  Score=32.73  Aligned_cols=36  Identities=22%  Similarity=0.217  Sum_probs=31.1

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (259)
                      .-+|+|+|| |-.|..-++.....|.. |.+++.+...
T Consensus        29 pa~VvViGa-GvaG~~Aa~~A~~lGA~-V~v~D~~~~~   64 (183)
T d1l7da1          29 PARVLVFGV-GVAGLQAIATAKRLGAV-VMATDVRAAT   64 (183)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCE-EEEECSCSTT
T ss_pred             CcEEEEEcC-cHHHHHHHHHHHHcCCE-EEEEeccHHH
Confidence            358999995 99999999999999998 9999986543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.17  E-value=0.76  Score=34.91  Aligned_cols=70  Identities=17%  Similarity=0.138  Sum_probs=44.4

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc--chhhhccCCCceeEeecccCccc--cCCcCEEEEc
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWIGHPRFELIRHDVTEPL--LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~dl~~~~--~~~~d~vi~~  104 (259)
                      ++++||-+| |+|.+    ...+++.|...|++++.++....  ...+...-..++.++.+|..+..  ...+|+|+..
T Consensus        33 ~~~~VLDiGcG~G~l----s~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~  107 (316)
T d1oria_          33 KDKVVLDVGSGTGIL----CMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISE  107 (316)
T ss_dssp             TTCEEEEETCTTSHH----HHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred             CcCEEEEEecCCcHH----HHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeee
Confidence            578999998 45544    34555668766999986532111  11111111357999999998877  4578988764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.57  E-value=0.47  Score=35.84  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=29.5

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      .-.|+|+|| |.-|...+.+|.++|.+ |+++.+.+
T Consensus         7 ~~dV~IIGA-G~sGl~~a~~L~~~G~~-v~i~Ek~~   40 (298)
T d1w4xa1           7 EVDVLVVGA-GFSGLYALYRLRELGRS-VHVIETAG   40 (298)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             CCCEEEECc-cHHHHHHHHHHHhCCCC-EEEEEcCC
Confidence            347999995 99999999999999998 99988753

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.54  E-value=0.81  Score=34.93  Aligned_cols=72  Identities=19%  Similarity=0.125  Sum_probs=45.9

Q ss_pred             cCCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCC--cchhhhccCCCceeEeecccCccc--cCCcCEEEEc
Q 025022           30 QSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNLRKWIGHPRFELIRHDVTEPL--LIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~dl~~~~--~~~~d~vi~~  104 (259)
                      .++++||-+| |+|.++    ..+++.|...|+++..++...  ....+......+++++.+|+.+..  ...+|+|+..
T Consensus        37 ~~~~~VLDlGcGtG~ls----~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se  112 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILS----MFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISE  112 (328)
T ss_dssp             HTTCEEEEETCTTSHHH----HHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred             CCcCEEEEeCCCCCHHH----HHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEE
Confidence            4678999998 455543    445567877699998753211  111122222457899999998877  3568988864


Q ss_pred             c
Q 025022          105 A  105 (259)
Q Consensus       105 a  105 (259)
                      .
T Consensus       113 ~  113 (328)
T d1g6q1_         113 W  113 (328)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=85.93  E-value=0.22  Score=34.44  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=22.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCC
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKN   58 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~   58 (259)
                      .+|+|.| +|++|-.++..|.+.|.+
T Consensus         4 a~VvIIG-gG~~G~e~A~~l~~~g~~   28 (183)
T d1d7ya1           4 APVVVLG-AGLASVSFVAELRQAGYQ   28 (183)
T ss_dssp             SSEEEEC-CSHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEC-ccHHHHHHHHHHHhcCCc
Confidence            3599999 599999999999999876

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=85.59  E-value=1.1  Score=30.08  Aligned_cols=66  Identities=17%  Similarity=0.115  Sum_probs=34.6

Q ss_pred             CEEEEEcCchhhhHH-HHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           33 MRILVTGGAGFIGSH-LVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        33 ~~vlItGatG~iG~~-l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      ++|.|.| +|.+|+. ....|... +.+ ++++..........+....   ++.+.  |-.+....++|+|+-+.
T Consensus         2 iri~iIG-~G~~g~~~~~~~l~~~~~~~-i~~v~d~~~~~~~~~~~~~---~~~~~--~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           2 LRIGVVG-LGGIAQKAWLPVLAAASDWT-LQGAWSPTRAKALPICESW---RIPYA--DSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             EEEEEEC-CSTHHHHTHHHHHHSCSSEE-EEEEECSSCTTHHHHHHHH---TCCBC--SSHHHHHTTCSEEEECS
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHhCCCcE-EEEEEechhHhhhhhhhcc---ccccc--ccchhhhhhcccccccc
Confidence            5899999 5899975 45666554 455 6555533332222222222   22221  11111145799987654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=85.47  E-value=0.47  Score=33.97  Aligned_cols=75  Identities=9%  Similarity=0.112  Sum_probs=50.3

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc---chhhhccCCCceeEeecccCccccCCcCEEEEccC
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a~  106 (259)
                      .+.+||=+| |+|.+...|++++...+.+ |++++.++.-..   +.++.......+.+...|..+......|+++.+..
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~-v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~  117 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  117 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCE-EEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCc-eEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence            467899999 8888888888776666777 999997543211   11222222356777888888777777787765443

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=85.43  E-value=0.42  Score=36.98  Aligned_cols=30  Identities=17%  Similarity=0.215  Sum_probs=27.2

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      |+|+| +|+-|..++..|.+.|++ |.++.+.
T Consensus         5 VIVVG-sG~aG~v~A~rLaeaG~~-VlvLEaG   34 (367)
T d1n4wa1           5 AVVIG-TGYGAAVSALRLGEAGVQ-TLMLEMG   34 (367)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             EEEeC-cCHHHHHHHHHHHHCcCe-EEEEecC
Confidence            78888 699999999999999999 9999874

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.19  E-value=0.3  Score=35.63  Aligned_cols=69  Identities=19%  Similarity=0.072  Sum_probs=45.3

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc---chhhhccCCCceeEeecccCccc-cCCcCEEEEcc
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~dl~~~~-~~~~d~vi~~a  105 (259)
                      ..++||=+| |+|.+    +..|.++|.+ |++++.++....   ++...  ...+++++.+|+.+.. .+.+|+|+.+.
T Consensus        37 ~~~~vLDiGCG~G~~----~~~l~~~g~~-v~GvD~S~~ml~~A~~~~~~--~~~~v~~~~~d~~~~~~~~~fD~i~~~~  109 (246)
T d1y8ca_          37 VFDDYLDLACGTGNL----TENLCPKFKN-TWAVDLSQEMLSEAENKFRS--QGLKPRLACQDISNLNINRKFDLITCCL  109 (246)
T ss_dssp             CTTEEEEETCTTSTT----HHHHGGGSSE-EEEECSCHHHHHHHHHHHHH--TTCCCEEECCCGGGCCCSCCEEEEEECT
T ss_pred             CCCeEEEEeCcCCHH----HHHHHHhCCc-cEeeccchhhhhhccccccc--cCccceeeccchhhhcccccccccceee
Confidence            357899999 56654    4556677887 999987543211   11111  1246889999998877 45689998754


Q ss_pred             C
Q 025022          106 C  106 (259)
Q Consensus       106 ~  106 (259)
                      +
T Consensus       110 ~  110 (246)
T d1y8ca_         110 D  110 (246)
T ss_dssp             T
T ss_pred             e
Confidence            3

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=84.96  E-value=0.62  Score=35.91  Aligned_cols=73  Identities=11%  Similarity=0.106  Sum_probs=48.8

Q ss_pred             CCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccccCCcCEEEEcc
Q 025022           32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (259)
Q Consensus        32 ~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~d~vi~~a  105 (259)
                      .+++.|+| +|..+..-++.+... +.++|.+.+|+........+.+....++.+..++-.++...+.|+|+-+.
T Consensus       128 a~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         128 ARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECC
T ss_pred             CceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecc
Confidence            46899998 688888777777554 67779999986554433333332334677777766555567778777544

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.03  E-value=1  Score=32.12  Aligned_cols=41  Identities=22%  Similarity=0.185  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHH--------------------hcCCCeEEEEcCCCCC
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLM--------------------ENEKNEVIVVDNYFTG   69 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~--------------------~~g~~~V~~~~r~~~~   69 (259)
                      ....+++|+|.|+ |.++--+++.|+                    +.|.++|+++.|+...
T Consensus        35 ~~~~gk~VvVIGg-GNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          35 PDLSGARAVVIGN-GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             CCCCSSEEEEECC-SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             ccccCceEEEECC-CchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            3356799999995 999999998887                    5688889999987543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.88  E-value=0.52  Score=33.58  Aligned_cols=71  Identities=23%  Similarity=0.265  Sum_probs=46.2

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      .+++||=+| |+|+.-.++++.. ..| . |++++.++.......+......++.++..|..+..     ...+|++++.
T Consensus        56 pg~~VLDlGcG~G~~~~~la~~v-~~g-~-V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~  132 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLADIV-DEG-I-IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  132 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHT-TTS-E-EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCEEEEeCCcCCHHHHHHHHhc-cCC-e-EEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEec
Confidence            468999999 7788778887655 334 4 99999754432222222222357888888888765     3456666664

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.83  E-value=0.73  Score=32.58  Aligned_cols=30  Identities=27%  Similarity=0.389  Sum_probs=25.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~   64 (259)
                      |||++.| ++..|..+.+.|+++|++ |+++.
T Consensus         1 MkI~~~G-~~~~~~~~l~~L~~~~~~-i~~V~   30 (203)
T d2bw0a2           1 MKIAVIG-QSLFGQEVYCHLRKEGHE-VVGVF   30 (203)
T ss_dssp             CEEEEEC-CHHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHCCCc-EEEEE
Confidence            7899997 578899999999999998 55444

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.68  E-value=0.72  Score=33.30  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=48.8

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc-----cCCcCEEEEc
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~-----~~~~d~vi~~  104 (259)
                      .+++||=.| |+|+.-.+|++..-..| . |++++.++.......+.......+..+..|..+..     ...+|++++.
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~VG~~G-~-V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d  150 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIVGWEG-K-IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTS-E-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCEEEEeccCCCHHHHHHHHHhCCCC-E-EEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE
Confidence            478999999 78888899988664444 4 99999865433333222223356777888876665     3567877764


Q ss_pred             c
Q 025022          105 A  105 (259)
Q Consensus       105 a  105 (259)
                      .
T Consensus       151 ~  151 (227)
T d1g8aa_         151 V  151 (227)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.61  E-value=0.67  Score=35.13  Aligned_cols=31  Identities=26%  Similarity=0.409  Sum_probs=27.1

Q ss_pred             EEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCC
Q 025022           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (259)
Q Consensus        35 vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~   67 (259)
                      |+|+| +|.-|-..+..|.++|++ |+++.+++
T Consensus         2 ViVIG-aG~aGL~aA~~L~~~G~~-V~VlE~~~   32 (383)
T d2v5za1           2 VVVVG-GGISGMAAAKLLHDSGLN-VVVLEARD   32 (383)
T ss_dssp             EEEEC-CBHHHHHHHHHHHHTTCC-EEEEESSS
T ss_pred             EEEEC-CCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            78888 499999999999999998 88887643

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=83.22  E-value=0.78  Score=33.08  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=28.6

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCCCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   68 (259)
                      -|+|.|| |..|...+..|.++|++ |+++.+.+.
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~~-V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGAN-VLLLDKGNK   36 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCC-EEEECSSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence            3889995 99999999999999999 999987643

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=83.13  E-value=1.1  Score=33.84  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=22.2

Q ss_pred             CEEEEEc-Cc-hhh--hHHHHHHHHhcCCCeEEEEcC
Q 025022           33 MRILVTG-GA-GFI--GSHLVDKLMENEKNEVIVVDN   65 (259)
Q Consensus        33 ~~vlItG-at-G~i--G~~l~~~L~~~g~~~V~~~~r   65 (259)
                      |||+|++ || |.+  ..+|+++|.++|++ |..+..
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~e-V~~i~~   36 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQ-VRWLGT   36 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTCE-EEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCCE-EEEEEe
Confidence            5777775 44 333  34689999999998 766654

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.05  E-value=1.1  Score=32.19  Aligned_cols=40  Identities=15%  Similarity=0.079  Sum_probs=32.9

Q ss_pred             cccCCCEEEEEcCchhhhHHHHHHHHh--------------------cCCCeEEEEcCCCC
Q 025022           28 FFQSNMRILVTGGAGFIGSHLVDKLME--------------------NEKNEVIVVDNYFT   68 (259)
Q Consensus        28 ~~~~~~~vlItGatG~iG~~l~~~L~~--------------------~g~~~V~~~~r~~~   68 (259)
                      .+.++++|+|.|+ |.++--+++.|++                    .|.++|+++.|+..
T Consensus        35 ~~~~gk~VvVIGg-GNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          35 PDLSCDTAVILGQ-GNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             CCTTSSEEEEESC-SHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             ccccCceEEEECC-chhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            3456899999994 9999999999987                    47788999998754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.66  E-value=1.6  Score=32.93  Aligned_cols=71  Identities=21%  Similarity=0.174  Sum_probs=46.3

Q ss_pred             cCCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc--chhhhccCCCceeEeecccCccc--cCCcCEEEEc
Q 025022           30 QSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWIGHPRFELIRHDVTEPL--LIEVDQIYHL  104 (259)
Q Consensus        30 ~~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~dl~~~~--~~~~d~vi~~  104 (259)
                      .++++||-+| |+|.++    ..+++.|...|+++..++....  ...+......+++++.+|+.+..  ...+|+|+..
T Consensus        34 ~~~~~VLDiGcG~G~ls----l~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse  109 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILS----MFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISE  109 (311)
T ss_dssp             TTTCEEEEETCTTSHHH----HHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEEC
T ss_pred             CCcCEEEEECCCCCHHH----HHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEe
Confidence            4678999998 555544    4455678766999987543211  11112222467999999998876  4679999863

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.50  E-value=0.94  Score=27.35  Aligned_cols=30  Identities=13%  Similarity=0.092  Sum_probs=24.0

Q ss_pred             CEEEEEcCchhhhHHHHHHHHhcCCCeEEEEc
Q 025022           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (259)
Q Consensus        33 ~~vlItGatG~iG~~l~~~L~~~g~~~V~~~~   64 (259)
                      |||||.|. |.=-.+|++.|.+.... +++.-
T Consensus         1 MkVLviGs-GgREHAia~~l~~s~~~-v~~~p   30 (90)
T d1vkza2           1 VRVHILGS-GGREHAIGWAFAKQGYE-VHFYP   30 (90)
T ss_dssp             CEEEEEEC-SHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCCe-EEEec
Confidence            79999995 55578999999887766 88764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.93  E-value=0.55  Score=31.55  Aligned_cols=30  Identities=13%  Similarity=0.295  Sum_probs=24.0

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      ||.+.| .|.+|..+++.|++.|+. ++ ..|.
T Consensus         2 kIg~IG-lG~MG~~ma~~L~~~g~~-~~-~~~~   31 (156)
T d2cvza2           2 KVAFIG-LGAMGYPMAGHLARRFPT-LV-WNRT   31 (156)
T ss_dssp             CEEEEC-CSTTHHHHHHHHHTTSCE-EE-ECSS
T ss_pred             eEEEEe-HHHHHHHHHHHHHhCCCE-EE-EeCC
Confidence            577888 699999999999998875 54 4453

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.56  E-value=1.1  Score=32.45  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             ccCCCEEEEEcCchhhhHHHHHHHHhc-CCCeEEEEcC
Q 025022           29 FQSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDN   65 (259)
Q Consensus        29 ~~~~~~vlItGatG~iG~~l~~~L~~~-g~~~V~~~~r   65 (259)
                      +.++++|+|-| -|-+|+++++.|.+. |.. |+++..
T Consensus        29 ~l~g~~v~IqG-fGnVG~~~a~~L~~~~G~k-vv~vsD   64 (239)
T d1gtma1          29 TLKGKTIAIQG-YGNAGYYLAKIMSEDFGMK-VVAVSD   64 (239)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHTTCCE-EEEEEC
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHHHhcCcc-eeeccc
Confidence            36789999999 499999999999865 777 666653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=81.44  E-value=0.86  Score=31.37  Aligned_cols=70  Identities=16%  Similarity=0.112  Sum_probs=41.1

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhc--------------cCCCceeEeecccCccc-
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--------------IGHPRFELIRHDVTEPL-   94 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~--------------~~~~~~~~~~~dl~~~~-   94 (259)
                      .+++||..| |+|..    +..|+++|++ |++++.++......-+..              ......+++.+|..+.. 
T Consensus        20 ~~~rvLd~GCG~G~~----a~~la~~G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~   94 (201)
T d1pjza_          20 PGARVLVPLCGKSQD----MSWLSGQGYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA   94 (201)
T ss_dssp             TTCEEEETTTCCSHH----HHHHHHHCCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred             CCCEEEEecCcCCHH----HHHHHHcCCc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence            467999999 66643    4455667998 999997543221111100              01234566777776655 


Q ss_pred             --cCCcCEEEEcc
Q 025022           95 --LIEVDQIYHLA  105 (259)
Q Consensus        95 --~~~~d~vi~~a  105 (259)
                        ...+|.|+...
T Consensus        95 ~~~~~~D~i~~~~  107 (201)
T d1pjza_          95 RDIGHCAAFYDRA  107 (201)
T ss_dssp             HHHHSEEEEEEES
T ss_pred             ccccceeEEEEEe
Confidence              34577776544

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.09  E-value=1.1  Score=32.20  Aligned_cols=61  Identities=21%  Similarity=0.218  Sum_probs=41.1

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCcchhhhccCCCceeEeecccCccc
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL   94 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~dl~~~~   94 (259)
                      .+++||=+| |+|+.-.+|++. ... .. |++++.++...............+..+.+|..+..
T Consensus        74 pG~~VLDlGcGsG~~~~~la~~-~~~-g~-V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~  135 (230)
T d1g8sa_          74 RDSKILYLGASAGTTPSHVADI-ADK-GI-VYAIEYAPRIMRELLDACAERENIIPILGDANKPQ  135 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHH-TTT-SE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG
T ss_pred             CCCEEEEeCEEcCHHHHHHHHh-CCC-CE-EEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCc
Confidence            478999999 888888898875 232 34 99999864433322222233467778888877766

>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: YxiM C-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=80.86  E-value=1.7  Score=30.21  Aligned_cols=51  Identities=14%  Similarity=0.038  Sum_probs=28.6

Q ss_pred             cCCcCEEEEccCCCCccccccChhHHHHHhhhhHHHHHHHHHHhCCeEEEEecc
Q 025022           95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (259)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~~Ss~  148 (259)
                      .+..|+||.+.|............+.+.   .....+++.+++.+.++|+++..
T Consensus        69 ~~~~D~vvi~~G~ND~~~~~~~~~~~~~---~~l~~li~~~~~~~~~~vl~~~~  119 (208)
T d2o14a2          69 IKPGDYFMLQLGINDTNPKHKESEAEFK---EVMRDMIRQVKAKGADVILSTPQ  119 (208)
T ss_dssp             CCTTCEEEEECCTGGGCGGGCCCHHHHH---HHHHHHHHHHHTTTCEEEEECCC
T ss_pred             cCCCCEEEEEcCCCcccccccccHHHHH---HHHHHHHHHHHhcCCceeecccc
Confidence            3456888887775432111222222232   34456777777777777776644

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=80.32  E-value=0.88  Score=35.08  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             EEEEEcCchhhhHHHHHHHHhcCCCeEEEEcCC
Q 025022           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (259)
Q Consensus        34 ~vlItGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (259)
                      -|+|+| +|+-|..++..|.+.|.+ |.++.+.
T Consensus         9 dvIVVG-sG~aG~v~A~rLaeaG~~-VlvLEaG   39 (370)
T d3coxa1           9 PALVIG-SGYGGAVAALRLTQAGIP-TQIVEMG   39 (370)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCe-EEEEeCC
Confidence            388888 699999999999999999 9999874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=80.21  E-value=1.1  Score=33.26  Aligned_cols=72  Identities=21%  Similarity=0.235  Sum_probs=47.8

Q ss_pred             CCCEEEEEc-CchhhhHHHHHHHHhcCCCeEEEEcCCCCCCc---chhhhccCCCceeEeecccCccc-cCCcCEEEEcc
Q 025022           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLA  105 (259)
Q Consensus        31 ~~~~vlItG-atG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~dl~~~~-~~~~d~vi~~a  105 (259)
                      ...+|+=+| |||.||-.++..+  .... |++++.++....   ...+. ....+++++.+|+.+.. ..++|+|+.|-
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~--p~~~-v~avDis~~Al~~A~~Na~~-~~~~~v~~~~~d~~~~~~~~~fDlIvsNP  183 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASER--PDCE-IIAVDRMPDAVSLAQRNAQH-LAIKNIHILQSDWFSALAGQQFAMIVSNP  183 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHC--TTSE-EEEECSSHHHHHHHHHHHHH-HTCCSEEEECCSTTGGGTTCCEEEEEECC
T ss_pred             cccceeeeehhhhHHHHHHHhhC--Ccce-eeeccchhHHHhHHHHHHHH-hCcccceeeecccccccCCCceeEEEecc
Confidence            345677666 8999999987765  2344 999987544321   11111 22246999999998865 34799999875


Q ss_pred             C
Q 025022          106 C  106 (259)
Q Consensus       106 ~  106 (259)
                      -
T Consensus       184 P  184 (274)
T d2b3ta1         184 P  184 (274)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.15  E-value=0.6  Score=31.40  Aligned_cols=27  Identities=19%  Similarity=0.211  Sum_probs=24.7

Q ss_pred             CCCEEEEEcCchhhhHHHHHHHHhcCCC
Q 025022           31 SNMRILVTGGAGFIGSHLVDKLMENEKN   58 (259)
Q Consensus        31 ~~~~vlItGatG~iG~~l~~~L~~~g~~   58 (259)
                      .+++|+|.|| |++|..++..+.+.|..
T Consensus        28 ~gkrVvVIGg-G~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2          28 VGNKVAIIGC-GGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             CCSEEEEECC-HHHHHHHHHHHTCCSSC
T ss_pred             cCCceEEEcC-chhHHHHHHHHHHcCCc
Confidence            4689999996 99999999999999987