BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025023
         (259 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
 pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
 pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
           With Inhibitor.
 pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
           With Inhibitor
          Length = 350

 Score = 32.3 bits (72), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 35/72 (48%)

Query: 26  EDDDDVLYTASFQEKEDNFVQYQTAQWVLYSLLLILAWGIGLFMLLYLPVRRYILRKDIR 85
           E++  +     + E  D F +    + VL+    IL W + + + L     R IL +DI+
Sbjct: 93  EENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIK 152

Query: 86  SRKLFLTPNAIV 97
           S+ +FLT +  V
Sbjct: 153 SQNIFLTKDGTV 164


>pdb|1MGS|A Chain A, The Solution Structure Of Melanoma Growth Stimulating
           Activity
 pdb|1MGS|B Chain B, The Solution Structure Of Melanoma Growth Stimulating
           Activity
          Length = 73

 Score = 28.9 bits (63), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 133 LQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKAVLTRLSNMTNEVFSR 186
           LQ+L G++   I++V V+ P     Q + +A   + RKA L   S +  ++  +
Sbjct: 12  LQTLQGIHPKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEK 65


>pdb|1MSG|A Chain A, Solution Structure Of Gro(Slash)melanoma Growth
           Stimulatory Activity Determined By 1h Nmr Spectroscopy
 pdb|1MSG|B Chain B, Solution Structure Of Gro(Slash)melanoma Growth
           Stimulatory Activity Determined By 1h Nmr Spectroscopy
 pdb|1MSH|A Chain A, Solution Structure Of Gro(Slash)melanoma Growth
           Stimulatory Activity Determined By 1h Nmr Spectroscopy
 pdb|1MSH|B Chain B, Solution Structure Of Gro(Slash)melanoma Growth
           Stimulatory Activity Determined By 1h Nmr Spectroscopy
          Length = 72

 Score = 28.9 bits (63), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 133 LQSLFGVYSLRIENVGVRRPPSDDVQIQGVANPSDFRKAVLTRLSNMTNEVFSR 186
           LQ+L G++   I++V V+ P     Q + +A   + RKA L   S +  ++  +
Sbjct: 12  LQTLQGIHPKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEK 65


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,782,601
Number of Sequences: 62578
Number of extensions: 256486
Number of successful extensions: 561
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 5
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)