Query 025023
Match_columns 259
No_of_seqs 59 out of 61
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 18:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hsa_A Pleckstrin homology dom 73.8 21 0.00073 29.0 8.9 79 88-176 44-124 (126)
2 2hth_B Vacuolar protein sortin 52.1 65 0.0022 25.9 8.0 91 81-180 34-132 (140)
3 2cay_A VPS36 PH domain, vacuol 38.1 89 0.003 25.4 6.7 88 83-181 49-137 (145)
4 3ha4_A MIX1; TPR-like, helix-t 23.6 38 0.0013 28.2 2.1 19 162-180 91-109 (154)
5 3hsa_A Pleckstrin homology dom 16.6 1E+02 0.0035 25.0 3.2 53 97-159 37-94 (126)
6 1wz4_A Major surface antigen; 15.5 42 0.0014 20.7 0.5 10 102-111 15-24 (26)
7 2jo1_A Phospholemman; FXYD1, N 13.6 2.2E+02 0.0077 21.4 4.1 36 38-75 4-40 (72)
8 2kl8_A OR15; structural genomi 12.5 1.2E+02 0.0041 22.9 2.4 27 154-182 41-67 (85)
9 1kd8_B GABH BLL, GCN4 acid bas 12.0 2.8E+02 0.0096 18.4 3.7 23 225-247 13-35 (36)
10 3j1r_A Archaeal adhesion filam 11.8 2.9E+02 0.0097 17.2 3.5 16 58-73 10-25 (26)
No 1
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=73.80 E-value=21 Score=29.04 Aligned_cols=79 Identities=11% Similarity=0.156 Sum_probs=55.6
Q ss_pred eeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEe-ehhhhhhhcc-eeEEEEeccCCCCCCCCeeeecCCCh
Q 025023 88 KLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIE-QGYLQSLFGV-YSLRIENVGVRRPPSDDVQIQGVANP 165 (259)
Q Consensus 88 kl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~-QG~Lqr~FGl-~slrIETAG~s~~~~~di~I~Gv~~p 165 (259)
.+.+|.+.++..=..|+. |-=+.-..+||.+|+++++| .|- |.+ +.|+|-..|...| -++++.+-.|.
T Consensus 44 ~~iFTnkRLI~vD~QG~T----GkK~~~~siPY~sI~~~siETAG~----fDlDaElki~isg~~~p--i~~~f~k~~di 113 (126)
T 3hsa_A 44 LFVFTSXRLILIDXQGVT----GXXVSYHSIPYXAIVHFQVETAGT----FDMDAELXLWISGQHEP--LVXELXRGTDV 113 (126)
T ss_dssp EEEEESSEEEEEEEESTT----SCEEEEEEEEGGGEEEEEEEEEST----TSCEEEEEEEETTCSSC--EEEEECTTSCH
T ss_pred eEEEccchheEEecCcCc----ccceEEEEeccceeeEEEEecccc----ccCCceEEEEEcCCceE--EEEeccCcccH
Confidence 455555555554345554 32233358999999999999 564 554 3588887777644 68899999999
Q ss_pred hhHHHHHHHHH
Q 025023 166 SDFRKAVLTRL 176 (259)
Q Consensus 166 ~~fRk~Il~~~ 176 (259)
.++-+++...+
T Consensus 114 ~~i~k~La~~v 124 (126)
T 3hsa_A 114 VGIQXTIARYA 124 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887665
No 2
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=52.14 E-value=65 Score=25.93 Aligned_cols=91 Identities=7% Similarity=0.133 Sum_probs=54.5
Q ss_pred hhccccceeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCC-------C
Q 025023 81 RKDIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRP-------P 153 (259)
Q Consensus 81 ~~d~~sRkl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETAG~s~~-------~ 153 (259)
+..+++-.+|+|.|-|+|- ...-- ..--.+||..|.++.++|+.+-+-=.+ ++.+..++..++ .
T Consensus 34 k~~~k~G~l~LTshRli~~-d~~~~-------~~s~~lpl~~v~~~e~~~~~f~~s~Ki-~l~l~~~~~~~~~gp~~~s~ 104 (140)
T 2hth_B 34 KIKFDAGTLLLSTHRLIWR-DQKNH-------ECCMAILLSQIVFIEEQAAGIGKSAKI-VVHLHPAPPNKEPGPFQSSK 104 (140)
T ss_dssp SSCCCCEEEEEESSEEEEE-ETTCC-------SCCEEEEGGGEEEEEEECCTTSSCCEE-EEEECCCCCCSSSCCCSTTS
T ss_pred CCCCcCCEEEEecCEEEEe-cCCCC-------ceEEEEEhHHeeeeeeeccccccCceE-EEEecCCCccCCCCCccccc
Confidence 3466777999999999994 33221 123489999999999999974221111 244444332222 1
Q ss_pred CCCeeeecC-CChhhHHHHHHHHHhhcc
Q 025023 154 SDDVQIQGV-ANPSDFRKAVLTRLSNMT 180 (259)
Q Consensus 154 ~~di~I~Gv-~~p~~fRk~Il~~~~~~~ 180 (259)
.+.+++..- -.+++|-.+..+.+....
T Consensus 105 ~~~~kLsFr~Gg~~eF~~~L~~al~~k~ 132 (140)
T 2hth_B 105 NSYIKLSFKEHGQIEFYRRLSEEMTQRR 132 (140)
T ss_dssp CCEEEEEETTSCHHHHHHHHHHHHHHCC
T ss_pred CcEEEEEEcCCCChHHHHHHHHHHHHhh
Confidence 234555432 345777777766665543
No 3
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=38.08 E-value=89 Score=25.42 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=55.2
Q ss_pred ccccceeEeeccceEeeecCCccccccccceeeEEEeCCCeeeEEEeehhhhhhhcceeEEEEeccCCCCCCCCeeeecC
Q 025023 83 DIRSRKLFLTPNAIVYKVTRPVPFPCFGVLKKEKHVLLPSVQDIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQIQGV 162 (259)
Q Consensus 83 d~~sRkl~vt~~~IvYKv~rgv~fp~~gv~~~Ek~VPL~~IqdV~I~QG~Lqr~FGl~slrIETAG~s~~~~~di~I~Gv 162 (259)
.+++-.+|+|.+-|+|- ...- |. ..--.+||..|+|+.++|+.+-+- ..+++.-... ..+.+.+++..-
T Consensus 49 ~~k~G~lyLTshRIIyv-~~~~--~~----~~SfslPL~~v~~~e~~~~~fg~s---~Ki~l~~~p~-~~~~~~~KLsFk 117 (145)
T 2cay_A 49 QRQRGRIFLTSQRIIYI-DDAK--PT----QNSLGLELDDLAYVNYSSGFLTRS---PRLILFFKDP-SSSTEFVQLSFR 117 (145)
T ss_dssp TCSSEEEEEESSEEEEE-ESSC--HH----HHCEEEEGGGEEEEEEECSSSSSS---CEEEEEESSC-SSTTCCEEEEES
T ss_pred CCCccEEEEEcCeEEEe-cCCC--Cc----ceEEEeEhHheeeeeEEcCccccC---ceEEEEecCC-CCCceEEEEEEc
Confidence 45666999999999994 3221 11 133489999999999999986441 2222222111 223567777543
Q ss_pred -CChhhHHHHHHHHHhhcch
Q 025023 163 -ANPSDFRKAVLTRLSNMTN 181 (259)
Q Consensus 163 -~~p~~fRk~Il~~~~~~~~ 181 (259)
--+.+|..+..+.+.+..-
T Consensus 118 ~GGa~eF~~~l~~al~~~~~ 137 (145)
T 2cay_A 118 KSDGVLFSQATERALENILT 137 (145)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHH
Confidence 2347888887777766543
No 4
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=23.62 E-value=38 Score=28.24 Aligned_cols=19 Identities=47% Similarity=0.772 Sum_probs=17.8
Q ss_pred CCChhhHHHHHHHHHhhcc
Q 025023 162 VANPSDFRKAVLTRLSNMT 180 (259)
Q Consensus 162 v~~p~~fRk~Il~~~~~~~ 180 (259)
++||+.+||-|++|+.|+.
T Consensus 91 vadpd~~rkevlmqllnvk 109 (154)
T 3ha4_A 91 VADPDEMRKEVLMQLLNVK 109 (154)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhh
Confidence 7899999999999999986
No 5
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=16.62 E-value=1e+02 Score=24.99 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=32.8
Q ss_pred EeeecCCccccccccceeeEEEeCCCee-----eEEEeehhhhhhhcceeEEEEeccCCCCCCCCeee
Q 025023 97 VYKVTRPVPFPCFGVLKKEKHVLLPSVQ-----DIVIEQGYLQSLFGVYSLRIENVGVRRPPSDDVQI 159 (259)
Q Consensus 97 vYKv~rgv~fp~~gv~~~Ek~VPL~~Iq-----dV~I~QG~Lqr~FGl~slrIETAG~s~~~~~di~I 159 (259)
.||..|..+ +-+.+.+-+-..| .+.+.-=|..+ |..+.+||||.... .+|++|
T Consensus 37 ayk~iRD~~------iFTnkRLI~vD~QG~TGkK~~~~siPY~s---I~~~siETAG~fDl-DaElki 94 (126)
T 3hsa_A 37 AYXMVRDLF------VFTSXRLILIDXQGVTGXXVSYHSIPYXA---IVHFQVETAGTFDM-DAELXL 94 (126)
T ss_dssp EEECSSEEE------EEESSEEEEEEEESTTSCEEEEEEEEGGG---EEEEEEEEESTTSC-EEEEEE
T ss_pred EehhcCceE------EEccchheEEecCcCcccceEEEEeccce---eeEEEEeccccccC-CceEEE
Confidence 466667666 3333333333334 44444555555 88999999999854 467777
No 6
>1wz4_A Major surface antigen; helix turn helix, gene regulation; NMR {Synthetic}
Probab=15.53 E-value=42 Score=20.72 Aligned_cols=10 Identities=40% Similarity=0.618 Sum_probs=8.1
Q ss_pred CCcccccccc
Q 025023 102 RPVPFPCFGV 111 (259)
Q Consensus 102 rgv~fp~~gv 111 (259)
||.+||++|-
T Consensus 15 rgly~pAGGS 24 (26)
T 1wz4_A 15 RGLYFPAGGX 24 (26)
T ss_dssp GGGSCCSCC-
T ss_pred cccccCCccc
Confidence 8899999983
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=13.62 E-value=2.2e+02 Score=21.38 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=24.6
Q ss_pred chhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhh
Q 025023 38 QEKEDNFVQYQTAQWVLYSLLL-ILAWGIGLFMLLYLPV 75 (259)
Q Consensus 38 ~e~~~~~vKY~tviwl~~slll-ilawgvGilmLL~lPi 75 (259)
+|..+-|-.|.++.-- +|.+ .+++++||+++|.-..
T Consensus 4 kE~dPF~YDY~tLRiG--GLifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 4 KEHDPFTYDYQSLQIG--GLVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHSGGGCSTHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccchHHhhcc--chHHHHHHHHHHHHHHHcCcc
Confidence 4555666678887754 3333 7778899999988533
No 8
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=12.47 E-value=1.2e+02 Score=22.94 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=22.8
Q ss_pred CCCeeeecCCChhhHHHHHHHHHhhcchh
Q 025023 154 SDDVQIQGVANPSDFRKAVLTRLSNMTNE 182 (259)
Q Consensus 154 ~~di~I~Gv~~p~~fRk~Il~~~~~~~~e 182 (259)
.-+|.|+|+ |+..||..-.++.++..|
T Consensus 41 dleiritgv--peqvrkelakeaerlake 67 (85)
T 2kl8_A 41 DLEIRITGV--PEQVRKELAKEAERLAKE 67 (85)
T ss_dssp CEEEEEESC--CHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEecC--hHHHHHHHHHHHHHHHHh
Confidence 457888997 789999999999998864
No 9
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=12.03 E-value=2.8e+02 Score=18.39 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHh
Q 025023 225 VLQKLEEVGSSVKRVQALIEEQC 247 (259)
Q Consensus 225 lL~kLeEv~~SvKrie~ll~~~~ 247 (259)
||++..+.++-|-|+..++.++.
T Consensus 13 Ll~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 13 LKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhcccc
Confidence 68899999999999999998764
No 10
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=11.80 E-value=2.9e+02 Score=17.19 Aligned_cols=16 Identities=13% Similarity=0.492 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 025023 58 LLILAWGIGLFMLLYL 73 (259)
Q Consensus 58 llilawgvGilmLL~l 73 (259)
|.+++.+-++++++|+
T Consensus 10 LIviav~aaVllylW~ 25 (26)
T 3j1r_A 10 LILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3355666666777763
Done!