Query 025024
Match_columns 259
No_of_seqs 109 out of 1221
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:22:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02663 Peptidase_C19G A subfa 100.0 8.7E-44 1.9E-48 301.0 17.0 195 24-257 1-195 (300)
2 KOG1865 Ubiquitin carboxyl-ter 100.0 1.2E-43 2.5E-48 305.1 11.2 209 20-257 106-314 (545)
3 cd02671 Peptidase_C19O A subfa 100.0 2.6E-42 5.7E-47 294.0 17.7 193 15-257 17-228 (332)
4 cd02660 Peptidase_C19D A subfa 100.0 6.9E-42 1.5E-46 293.2 17.0 207 23-257 1-223 (328)
5 cd02668 Peptidase_C19L A subfa 100.0 2E-41 4.3E-46 289.5 17.0 196 24-257 1-204 (324)
6 cd02661 Peptidase_C19E A subfa 100.0 1.2E-40 2.6E-45 282.5 17.8 210 22-257 1-210 (304)
7 cd02658 Peptidase_C19B A subfa 100.0 1.6E-40 3.4E-45 282.8 16.0 195 24-257 1-222 (311)
8 COG5560 UBP12 Ubiquitin C-term 100.0 2E-40 4.3E-45 286.9 7.7 181 21-203 264-449 (823)
9 cd02664 Peptidase_C19H A subfa 100.0 3.9E-39 8.4E-44 275.4 15.5 181 24-257 1-182 (327)
10 cd02659 peptidase_C19C A subfa 100.0 1.6E-38 3.4E-43 273.1 14.8 199 21-257 1-199 (334)
11 cd02657 Peptidase_C19A A subfa 100.0 6.9E-38 1.5E-42 265.8 16.7 193 24-257 1-203 (305)
12 COG5533 UBP5 Ubiquitin C-termi 100.0 1.4E-39 3.1E-44 260.6 5.8 233 19-255 68-311 (415)
13 cd02667 Peptidase_C19K A subfa 100.0 1.4E-37 2.9E-42 260.5 13.2 152 24-257 1-156 (279)
14 cd02669 Peptidase_C19M A subfa 100.0 1.6E-36 3.4E-41 268.1 15.9 204 19-258 116-340 (440)
15 KOG0944 Ubiquitin-specific pro 100.0 8.7E-34 1.9E-38 247.3 9.8 196 2-240 293-503 (763)
16 KOG1868 Ubiquitin C-terminal h 100.0 2.4E-33 5.3E-38 251.4 10.6 235 18-255 297-546 (653)
17 cd02666 Peptidase_C19J A subfa 100.0 1.3E-32 2.8E-37 234.4 13.7 171 22-220 1-203 (343)
18 cd02662 Peptidase_C19F A subfa 100.0 2E-31 4.4E-36 218.3 11.5 113 24-232 1-119 (240)
19 KOG1866 Ubiquitin carboxyl-ter 100.0 1.5E-30 3.3E-35 228.9 6.8 200 20-255 93-293 (944)
20 cd02674 Peptidase_C19R A subfa 100.0 9.4E-30 2E-34 207.5 9.2 125 24-255 1-131 (230)
21 COG5207 UBP14 Isopeptidase T [ 100.0 6.2E-29 1.4E-33 211.1 9.7 195 22-254 303-503 (749)
22 KOG1863 Ubiquitin carboxyl-ter 99.9 4.2E-28 9.2E-33 232.8 9.4 199 17-254 164-363 (1093)
23 COG5077 Ubiquitin carboxyl-ter 99.9 1.9E-28 4E-33 216.4 4.8 199 17-255 188-388 (1089)
24 KOG1867 Ubiquitin-specific pro 99.9 4.9E-27 1.1E-31 207.0 10.2 214 20-257 159-382 (492)
25 PF13423 UCH_1: Ubiquitin carb 99.9 2.1E-26 4.5E-31 194.4 13.0 203 23-255 1-207 (295)
26 PF00443 UCH: Ubiquitin carbox 99.9 9.8E-26 2.1E-30 187.0 11.4 148 22-189 1-152 (269)
27 cd02673 Peptidase_C19Q A subfa 99.9 1E-25 2.2E-30 184.2 10.1 150 25-257 2-153 (245)
28 cd02665 Peptidase_C19I A subfa 99.9 8.2E-24 1.8E-28 169.9 8.1 112 24-225 1-112 (228)
29 cd02257 Peptidase_C19 Peptidas 99.9 2.1E-23 4.6E-28 171.0 9.6 138 24-254 1-144 (255)
30 KOG1873 Ubiquitin-specific pro 99.9 5.7E-23 1.2E-27 181.8 8.3 149 20-203 203-367 (877)
31 cd02672 Peptidase_C19P A subfa 99.9 7.3E-23 1.6E-27 169.4 5.3 145 15-251 8-157 (268)
32 KOG4598 Putative ubiquitin-spe 99.9 5.9E-23 1.3E-27 180.4 2.5 159 19-240 84-248 (1203)
33 KOG1864 Ubiquitin-specific pro 99.9 1.3E-21 2.9E-26 175.4 9.7 250 5-257 212-469 (587)
34 KOG1871 Ubiquitin-specific pro 99.8 1.1E-20 2.4E-25 156.7 11.8 233 17-257 23-309 (420)
35 KOG1870 Ubiquitin C-terminal h 99.8 3.8E-21 8.2E-26 181.0 6.5 185 16-204 240-428 (842)
36 KOG2026 Spindle pole body prot 99.8 4E-18 8.6E-23 141.2 11.4 164 20-217 132-314 (442)
37 KOG1872 Ubiquitin-specific pro 99.5 3.3E-14 7.1E-19 121.4 3.3 164 22-216 105-279 (473)
38 KOG1275 PAB-dependent poly(A) 99.3 2.8E-12 6.1E-17 116.7 6.3 209 18-255 495-728 (1118)
39 cd02670 Peptidase_C19N A subfa 98.9 8.7E-10 1.9E-14 89.7 4.9 91 24-221 1-95 (241)
40 KOG1864 Ubiquitin-specific pro 98.0 1.5E-05 3.3E-10 72.7 6.4 105 25-130 34-154 (587)
41 KOG1870 Ubiquitin C-terminal h 96.7 0.00034 7.5E-09 67.1 -0.1 48 206-255 696-743 (842)
42 PF05408 Peptidase_C28: Foot-a 96.4 0.0014 2.9E-08 50.1 1.3 33 10-42 21-53 (193)
43 PF15499 Peptidase_C98: Ubiqui 96.3 0.0044 9.6E-08 50.1 3.5 28 26-53 6-33 (275)
44 KOG1873 Ubiquitin-specific pro 95.7 0.0047 1E-07 56.9 1.5 30 205-234 677-706 (877)
45 PF08715 Viral_protease: Papai 87.5 1.2 2.7E-05 37.9 5.1 77 21-125 101-178 (320)
46 KOG3556 Familial cylindromatos 74.3 4.9 0.00011 36.3 4.2 25 20-44 366-390 (724)
47 PF14353 CpXC: CpXC protein 73.2 3.5 7.6E-05 30.1 2.7 51 179-239 1-51 (128)
48 KOG1871 Ubiquitin-specific pro 70.1 0.82 1.8E-05 39.5 -1.4 189 21-222 177-403 (420)
49 KOG1867 Ubiquitin-specific pro 67.2 1.2 2.6E-05 40.4 -1.1 105 20-125 75-181 (492)
50 KOG1887 Ubiquitin carboxyl-ter 62.2 1.7 3.6E-05 41.2 -1.2 139 96-255 532-687 (806)
51 PF13465 zf-H2C2_2: Zinc-finge 61.1 4.4 9.5E-05 20.4 0.8 13 223-235 11-23 (26)
52 PF08882 Acetone_carb_G: Aceto 53.6 8.4 0.00018 27.2 1.4 57 179-240 24-88 (112)
53 PHA02998 RNA polymerase subuni 46.0 18 0.00039 27.9 2.3 53 169-240 132-185 (195)
54 PF07754 DUF1610: Domain of un 44.3 11 0.00024 18.8 0.6 10 225-234 15-24 (24)
55 TIGR00373 conserved hypothetic 43.9 94 0.002 23.6 6.0 22 112-133 78-99 (158)
56 TIGR03037 anthran_nbaC 3-hydro 43.4 19 0.00042 27.4 2.1 46 179-234 114-159 (159)
57 PRK13264 3-hydroxyanthranilate 41.9 20 0.00043 27.8 2.0 52 178-239 119-170 (177)
58 COG3478 Predicted nucleic-acid 40.1 20 0.00043 22.6 1.4 29 225-253 3-31 (68)
59 PF12171 zf-C2H2_jaz: Zinc-fin 39.0 16 0.00034 18.4 0.7 11 226-236 1-11 (27)
60 PRK03824 hypA hydrogenase nick 37.8 25 0.00055 25.9 2.0 52 175-236 66-117 (135)
61 KOG2906 RNA polymerase III sub 36.8 64 0.0014 22.3 3.6 69 173-244 15-83 (105)
62 PF00096 zf-C2H2: Zinc finger, 34.6 14 0.00031 17.5 0.2 10 227-236 1-10 (23)
63 KOG2757 Mannose-6-phosphate is 33.0 1.5E+02 0.0032 26.0 5.9 92 20-120 138-231 (411)
64 PRK06266 transcription initiat 32.0 2E+02 0.0044 22.3 6.2 10 227-236 137-146 (178)
65 PF09855 DUF2082: Nucleic-acid 31.3 35 0.00075 21.7 1.5 17 227-243 1-17 (64)
66 cd00350 rubredoxin_like Rubred 30.6 48 0.001 17.7 1.9 10 227-236 18-27 (33)
67 COG4481 Uncharacterized protei 30.3 31 0.00067 21.0 1.1 12 177-188 32-43 (60)
68 PF04959 ARS2: Arsenite-resist 29.8 23 0.00049 28.5 0.6 34 207-240 57-91 (214)
69 COG0375 HybF Zn finger protein 29.7 31 0.00067 24.7 1.2 20 213-236 77-96 (115)
70 KOG1491 Predicted GTP-binding 29.1 38 0.00082 29.4 1.8 21 19-39 22-42 (391)
71 PF09190 DALR_2: DALR domain; 28.3 1E+02 0.0022 19.1 3.3 46 71-117 18-63 (63)
72 COG2051 RPS27A Ribosomal prote 27.7 35 0.00076 21.7 1.1 16 178-193 18-33 (67)
73 PF10264 Stork_head: Winged he 27.7 1.9E+02 0.0041 19.3 5.4 53 66-121 10-62 (80)
74 PF14205 Cys_rich_KTR: Cystein 26.2 44 0.00096 20.4 1.3 11 226-236 28-38 (55)
75 PF06397 Desulfoferrod_N: Desu 25.9 39 0.00084 18.7 0.9 13 227-239 7-19 (36)
76 COG4647 AcxC Acetone carboxyla 24.5 1.1E+02 0.0023 22.4 3.1 69 169-239 58-133 (165)
77 PHA02768 hypothetical protein; 24.4 33 0.00071 21.1 0.5 9 227-235 6-14 (55)
78 cd05029 S-100A6 S-100A6: S-100 24.3 2.3E+02 0.0049 19.0 5.2 30 70-99 10-39 (88)
79 TIGR00100 hypA hydrogenase nic 24.3 61 0.0013 23.2 2.0 17 174-190 65-81 (115)
80 PF13894 zf-C2H2_4: C2H2-type 23.8 34 0.00073 15.8 0.4 11 227-237 1-11 (24)
81 COG2888 Predicted Zn-ribbon RN 22.4 41 0.00088 20.9 0.6 50 180-235 10-59 (61)
82 PF13240 zinc_ribbon_2: zinc-r 22.1 43 0.00093 16.3 0.6 12 228-239 1-12 (23)
83 KOG2907 RNA polymerase I trans 21.9 45 0.00097 23.7 0.8 14 180-193 75-88 (116)
84 PRK12380 hydrogenase nickel in 21.8 71 0.0015 22.7 1.9 17 174-190 65-81 (113)
85 PRK00415 rps27e 30S ribosomal 21.1 55 0.0012 20.4 1.0 16 178-193 10-25 (59)
86 PF08199 E2: Bacteriophage E2- 20.2 24 0.00052 18.8 -0.6 15 23-37 18-32 (37)
87 cd05027 S-100B S-100B: S-100B 20.1 2.3E+02 0.005 18.9 4.1 31 69-100 7-38 (88)
No 1
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.7e-44 Score=300.98 Aligned_cols=195 Identities=65% Similarity=1.093 Sum_probs=166.2
Q ss_pred ccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhhcc
Q 025024 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (259)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~~ 103 (259)
||.|+||||||||+||+|++ .+++++|+.+|..|+......+.++|..|+.+++..++
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~----------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~ 58 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF----------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENE 58 (300)
T ss_pred CccCCCcceehhHHHHHhhh----------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcC
Confidence 99999999999999999987 56889999999999988666667999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeeeec
Q 025024 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (259)
Q Consensus 104 ~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~C~ 183 (259)
.|.++.||||||||..|||.||+++....+...... ...+........++|.++|+|++.++++|.
T Consensus 59 ~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~ 124 (300)
T cd02663 59 LFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANR--------------KLNNNNNAEPQPTWVHEIFQGILTNETRCL 124 (300)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccc--------------cccccccCCcCCCChhhhCceEEEeeEEeC
Confidence 999999999999999999999999987644332110 001112223456889999999999999999
Q ss_pred cCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchheecc
Q 025024 184 RCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLH 257 (259)
Q Consensus 184 ~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i~h 257 (259)
.|++.+.++|+|++|+|+|++..+|++||+.|+++|.++|+++|+|++|++++.+++. ..+..+|++ |++|
T Consensus 125 ~C~~~s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~--~~i~~lP~v-Lii~ 195 (300)
T cd02663 125 TCETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKR--MKIKKLPKI-LALH 195 (300)
T ss_pred CCCCCccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEE--EEeccCCce-eEEE
Confidence 9999999999999999999999999999999999999999999999999999998873 444555554 5555
No 2
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=305.10 Aligned_cols=209 Identities=27% Similarity=0.476 Sum_probs=179.3
Q ss_pred CCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHH
Q 025024 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLK 99 (259)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~ 99 (259)
...+||.|.|||||+|||||||.++||+.++|+...+. ..+.....|++|+|+..+........ .+++|..|+..|+
T Consensus 106 ~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs-~~C~~~~~C~lc~~q~hi~~A~~~~g--~pisP~~i~s~L~ 182 (545)
T KOG1865|consen 106 AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHS-RSCHRAKFCMLCTFQAHITRALHNPG--HPISPSQILSNLR 182 (545)
T ss_pred cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhh-hhccccCeeeehHHHHHHHHHhcCCC--CccChHHHHHhhh
Confidence 34899999999999999999999999999999987665 24456778999999999888887643 3799999999999
Q ss_pred hhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeee
Q 025024 100 KQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNE 179 (259)
Q Consensus 100 ~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~ 179 (259)
.+...|..|+|+||||||++++|.|+..+....... .......++|+++|||.++++
T Consensus 183 ~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~-----------------------~~~sq~ttlv~~iFGG~LrS~ 239 (545)
T KOG1865|consen 183 NISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQV-----------------------DPRSQDTTLVHQIFGGYLRSQ 239 (545)
T ss_pred hhcccccCCchhhHHHHHHHHHHHHHHhhcCCCccC-----------------------Ccccccceehhhhhccchhhc
Confidence 999999999999999999999999998886211111 111235588999999999999
Q ss_pred eeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchheecc
Q 025024 180 TRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLH 257 (259)
Q Consensus 180 i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i~h 257 (259)
++|..|++++..||++++|+|+|..-.+|+++|++|+++|.++|+|+|.|++|+++++|.+ +..+...|+|| ++|
T Consensus 240 vkC~~C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K--~lti~raPnVL-Ti~ 314 (545)
T KOG1865|consen 240 IKCLHCKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASK--QLTIHRAPNVL-TLH 314 (545)
T ss_pred eecccCCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccc--eeeeecCCceE-EEe
Confidence 9999999999999999999999997789999999999999999999999999999999998 45555555554 444
No 3
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-42 Score=294.01 Aligned_cols=193 Identities=32% Similarity=0.578 Sum_probs=155.1
Q ss_pred CCCCCCCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHH
Q 025024 15 QFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRF 94 (259)
Q Consensus 15 ~~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l 94 (259)
..+...+++||.|+||||||||+||+|+++|+|++++.+.... .........+..++..++..... ...|..|
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~-----~~~~~~~q~~~~~l~~~~~~~~~--~~~P~~~ 89 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSL-----ISSVEQLQSSFLLNPEKYNDELA--NQAPRRL 89 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhcc-----cCcHHHHHHHHHHHHHHHhhccc--ccCHHHH
Confidence 3444477999999999999999999999999999998776311 11111122222333444443222 3679999
Q ss_pred HHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccce
Q 025024 95 VQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQG 174 (259)
Q Consensus 95 ~~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g 174 (259)
+.++++.++.|.++.||||+|||..||+.|++ +|.++|+|
T Consensus 90 ~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~----------------------------------------~i~~~F~g 129 (332)
T cd02671 90 LNALREVNPMYEGYLQHDAQEVLQCILGNIQE----------------------------------------LVEKDFQG 129 (332)
T ss_pred HHHHHHhccccCCccccCHHHHHHHHHHHHHH----------------------------------------HHHhhhce
Confidence 99999999999999999999999999999972 26789999
Q ss_pred eeeeeeeeccCCCccccccCceEeeeecCCC-------------------CCHHHHHhhccccceeCCCCccccccCCCc
Q 025024 175 ILTNETRCLRCETVTARDETFFDLSLDIEQN-------------------SSITSCLKNFSSTETLNAEDKFFCDKCCRL 235 (259)
Q Consensus 175 ~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~~-------------------~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~ 235 (259)
++.++++|.+|++.+.+.|+|++|+|+|+.. .+|++||+.|+++|.++|+|+|+|++|+++
T Consensus 130 ~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~ 209 (332)
T cd02671 130 QLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHY 209 (332)
T ss_pred EEEEEEEeCCCCCeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCc
Confidence 9999999999999999999999999999864 489999999999999999999999999999
Q ss_pred ceeeeeeccccccccchheecc
Q 025024 236 VIYTYICKSSVTDISCIVVVLH 257 (259)
Q Consensus 236 ~~~~~~~~~~~~~~p~~l~i~h 257 (259)
+.+++ +.....+|++ |++|
T Consensus 210 ~~a~k--~~~~~~~P~v-L~i~ 228 (332)
T cd02671 210 TEAER--SLLFDKLPEV-ITIH 228 (332)
T ss_pred eeEEE--EEEEecCCCE-EEEE
Confidence 99988 3344555555 4444
No 4
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.9e-42 Score=293.21 Aligned_cols=207 Identities=25% Similarity=0.434 Sum_probs=170.6
Q ss_pred cccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCC-CCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhh
Q 025024 23 FGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN-KNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQ 101 (259)
Q Consensus 23 ~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~ 101 (259)
+||.|+||||||||+||+|+++|+|+++++...... ........++.++|+++|..++.... ..++.|..++.+++..
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~~~~l~~~~~~ 79 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGD-RSPYGPINLLYLSWKH 79 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCCC-CCCcCHHHHHHHHHhh
Confidence 699999999999999999999999999998853321 12234456899999999999965432 3368999999999888
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeee
Q 025024 102 NELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETR 181 (259)
Q Consensus 102 ~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~ 181 (259)
.+.|.++.||||+||+..||+.||+++....+... ......++|.++|+|.+.++++
T Consensus 80 ~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~-----------------------~~~~~~~~i~~~F~g~~~~~~~ 136 (328)
T cd02660 80 SRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN-----------------------DESHCNCIIHQTFSGSLQSSVT 136 (328)
T ss_pred chhhcccccccHHHHHHHHHHHHHHHhhccccccc-----------------------ccccCCceeEEecccEEEeeeE
Confidence 88999999999999999999999998875432110 0112357899999999999999
Q ss_pred eccCCCccccccCceEeeeecCCC---------------CCHHHHHhhccccceeCCCCccccccCCCcceeeeeecccc
Q 025024 182 CLRCETVTARDETFFDLSLDIEQN---------------SSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSV 246 (259)
Q Consensus 182 C~~C~~~s~~~e~f~~L~L~i~~~---------------~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~ 246 (259)
|..|++.+.+.|+|+.|+|+|+.. .+|+++|+.|+++|.+.+.+ |+|++|++++.+.+ +..+
T Consensus 137 C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~--~~~i 213 (328)
T cd02660 137 CQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATK--QLSI 213 (328)
T ss_pred cCCCCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEE--EEEe
Confidence 999999999999999999999865 89999999999999998877 99999999988877 3445
Q ss_pred ccccchheecc
Q 025024 247 TDISCIVVVLH 257 (259)
Q Consensus 247 ~~~p~~l~i~h 257 (259)
..+|++ |++|
T Consensus 214 ~~lP~~-Lii~ 223 (328)
T cd02660 214 KKLPPV-LCFQ 223 (328)
T ss_pred cCCCce-eEEE
Confidence 556665 4554
No 5
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-41 Score=289.50 Aligned_cols=196 Identities=26% Similarity=0.517 Sum_probs=164.6
Q ss_pred ccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCC-----C---CcchhhHHHHHHHHHHHHHhcccCccccCcHHHH
Q 025024 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKN-----L---GDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFV 95 (259)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~-----~---~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~ 95 (259)
||.|+||||||||+||+|+++|+|+++++........ + .....+++++|++||..|+.+.. ..++|..|.
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~--~~i~p~~f~ 78 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNR--SVVDPSGFV 78 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCC--ceEChHHHH
Confidence 8999999999999999999999999999876432110 0 01235799999999999998753 469999999
Q ss_pred HHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCcccccccccccee
Q 025024 96 QRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGI 175 (259)
Q Consensus 96 ~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~ 175 (259)
.+++ |..++||||+||+..||+.||+++..... ....++|.++|+|+
T Consensus 79 ~~l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~----------------------------~~~~~~i~~~F~G~ 125 (324)
T cd02668 79 KALG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN----------------------------PDLKNIVQDLFRGE 125 (324)
T ss_pred HHhC-----CCCccccCHHHHHHHHHHHHHHHHhhccC----------------------------CcccchhhhhcceE
Confidence 9884 67889999999999999999998864210 01236799999999
Q ss_pred eeeeeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchhee
Q 025024 176 LTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVV 255 (259)
Q Consensus 176 ~~~~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i 255 (259)
+..+++|..|++++.+.|+|+.|+|+|++..+|+++|+.|+++|.++|+++|.|++|++++.+++ +..+..+|++ |+
T Consensus 126 ~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k--~~~i~~lP~i-Li 202 (324)
T cd02668 126 YSYVTQCSKCGRESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATR--RIRLTTLPPT-LN 202 (324)
T ss_pred EEEEEEeCCCCCccccccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeEE--EEEecCCCCe-EE
Confidence 99999999999999999999999999998899999999999999999999999999999998887 3445566665 55
Q ss_pred cc
Q 025024 256 LH 257 (259)
Q Consensus 256 ~h 257 (259)
||
T Consensus 203 i~ 204 (324)
T cd02668 203 FQ 204 (324)
T ss_pred EE
Confidence 55
No 6
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-40 Score=282.51 Aligned_cols=210 Identities=29% Similarity=0.466 Sum_probs=174.0
Q ss_pred ccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhh
Q 025024 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQ 101 (259)
Q Consensus 22 ~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~ 101 (259)
++||.|.||||||||+||+|+++|+|++++++..... .......++.++|..++..++.+.. ..+.|..|..++...
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~p~~~~~~l~~~ 77 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSK-DCCNEGFCMMCALEAHVERALASSG--PGSAPRIFSSNLKQI 77 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhh-hccCCcchHHHHHHHHHHHHHhCCC--CccChHHHHHHHHHH
Confidence 5899999999999999999999999999998643322 2233456899999999999987643 358999999999999
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeee
Q 025024 102 NELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETR 181 (259)
Q Consensus 102 ~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~ 181 (259)
.+.|..+.||||+||+.+||+.||++.......... ........++|.++|+|++.++++
T Consensus 78 ~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~i~~~F~g~~~~~~~ 137 (304)
T cd02661 78 SKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA--------------------VDPSSQETTLVQQIFGGYLRSQVK 137 (304)
T ss_pred HHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc--------------------cCccccCCChhhhcCCcEEeeeEE
Confidence 999999999999999999999999887654322110 011123457899999999999999
Q ss_pred eccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchheecc
Q 025024 182 CLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLH 257 (259)
Q Consensus 182 C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i~h 257 (259)
|.+|+..+.++++|..|+|+|+...+|+++|+.++++|.++|+++|+|++|++++.+++ +..+..+|++ |++|
T Consensus 138 C~~C~~~s~~~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~--~~~i~~~P~i-L~i~ 210 (304)
T cd02661 138 CLNCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASK--QLTIHRAPNV-LTIH 210 (304)
T ss_pred eCCCCCCcCccccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEE--EEEEecCCcE-EEEE
Confidence 99999999999999999999999889999999999999999999999999999988876 3344555554 5555
No 7
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-40 Score=282.76 Aligned_cols=195 Identities=27% Similarity=0.386 Sum_probs=162.6
Q ss_pred ccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCC-CCCCcchhhHHHHHHHHHHHHHhcccC------------ccccC
Q 025024 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN-KNLGDAEENLLTCLADLFTQIRAQKKK------------TGVIA 90 (259)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~------------~~~~~ 90 (259)
||.|+||||||||+||+|+++|+|+++++...... ........+++++|++++..|+..... ..++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 99999999999999999999999999998743221 122234567999999999999875322 24689
Q ss_pred cHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCcccccccc
Q 025024 91 PKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHK 170 (259)
Q Consensus 91 p~~l~~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~ 170 (259)
|..|+.+++..++.|..+.||||+||+.+||+.|++++... ..+.+.+
T Consensus 81 p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~--------------------------------~~~~~~~ 128 (311)
T cd02658 81 PSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN--------------------------------LGLNPND 128 (311)
T ss_pred cHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc--------------------------------ccCCchh
Confidence 99999999999999999999999999999999999887521 1134789
Q ss_pred ccceeeeeeeeeccCCCccccccCceEeeeecCCC--------------CCHHHHHhhccccceeCCCCccccccCCCcc
Q 025024 171 NFQGILTNETRCLRCETVTARDETFFDLSLDIEQN--------------SSITSCLKNFSSTETLNAEDKFFCDKCCRLV 236 (259)
Q Consensus 171 lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~~--------------~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~ 236 (259)
+|+|.+..+++|.+|++.+...+++..|+|+++.. .+|+++|+.|+++|.++ ++|++|++++
T Consensus 129 ~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~ 204 (311)
T cd02658 129 LFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKT 204 (311)
T ss_pred heEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcc
Confidence 99999999999999999999999999999999753 38999999999999997 6899999999
Q ss_pred eeeeeeccccccccchheecc
Q 025024 237 IYTYICKSSVTDISCIVVVLH 257 (259)
Q Consensus 237 ~~~~~~~~~~~~~p~~l~i~h 257 (259)
.+++ +..+..+|++| ++|
T Consensus 205 ~a~k--~~~i~~lP~vL-ii~ 222 (311)
T cd02658 205 TATK--TTGFKTFPDYL-VIN 222 (311)
T ss_pred cEEE--EEEeecCCceE-EEE
Confidence 9887 34556666664 444
No 8
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-40 Score=286.87 Aligned_cols=181 Identities=25% Similarity=0.362 Sum_probs=154.4
Q ss_pred CccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcC----CCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHH
Q 025024 21 RYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSN----NKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQ 96 (259)
Q Consensus 21 ~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~----~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~ 96 (259)
|.+||+|+||||||||.||||.|++.++.|++.-... ..++.+-.+.++.+++.|+.+++.++. .++.|..|+.
T Consensus 264 GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~--haf~Ps~fK~ 341 (823)
T COG5560 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNL--HAFTPSGFKK 341 (823)
T ss_pred cccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccc--cccChHHHHH
Confidence 6899999999999999999999999999999864222 235667789999999999999997643 3699999999
Q ss_pred HHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-ccccCCCCCCCCCCCCCCCcccccccccccee
Q 025024 97 RLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSP-SEKTANGPTNGLANGVRKEPLVTWVHKNFQGI 175 (259)
Q Consensus 97 ~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~ 175 (259)
.++.++..|.|+.|||.+||+.++||.||+++++...++.....+-. .+..-.......-|....+++.|+|+|+|.|.
T Consensus 342 tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgm 421 (823)
T COG5560 342 TIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGM 421 (823)
T ss_pred HHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 99999999999999999999999999999999999888886554322 22222222333446677788999999999999
Q ss_pred eeeeeeeccCCCccccccCceEeeeecC
Q 025024 176 LTNETRCLRCETVTARDETFFDLSLDIE 203 (259)
Q Consensus 176 ~~~~i~C~~C~~~s~~~e~f~~L~L~i~ 203 (259)
+++++.|..|+.++++++||++|+||+|
T Consensus 422 yKSTL~Cp~C~~vsitfDPfmdlTLPLP 449 (823)
T COG5560 422 YKSTLTCPGCGSVSITFDPFMDLTLPLP 449 (823)
T ss_pred hhceeeccCcCceeeeecchhhccccCc
Confidence 9999999999999999999999999996
No 9
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.9e-39 Score=275.44 Aligned_cols=181 Identities=34% Similarity=0.579 Sum_probs=153.3
Q ss_pred ccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHH-HHHHHHhhc
Q 025024 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKR-FVQRLKKQN 102 (259)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~-l~~~~~~~~ 102 (259)
||.|+||||||||+||+|+++|+|++++++.... .......+..+|+.+|..|...... ++.|.. ++.++. .
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~---~~~~~~~~~~~L~~lf~~l~~~~~~--~~~~~~~~l~~~~--~ 73 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLP---RLGDSQSVMKKLQLLQAHLMHTQRR--AEAPPDYFLEASR--P 73 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcc---ccCCcchHHHHHHHHHHHHhhcCCc--ccCCHHHHHHHhc--c
Confidence 8999999999999999999999999999986432 1223456888999999998865332 466666 666543 4
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeeee
Q 025024 103 ELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRC 182 (259)
Q Consensus 103 ~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~C 182 (259)
+.|..+.|||||||+..||+.|+ ++|.++|+|++.++++|
T Consensus 74 ~~f~~~~QqDa~EFl~~lLd~l~----------------------------------------~~i~~~F~G~~~~~i~C 113 (327)
T cd02664 74 PWFTPGSQQDCSEYLRYLLDRLH----------------------------------------TLIEKMFGGKLSTTIRC 113 (327)
T ss_pred cccCCCCcCCHHHHHHHHHHHHH----------------------------------------HHHHhhCcEEeEeEEEc
Confidence 67999999999999999999998 12788999999999999
Q ss_pred ccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchheecc
Q 025024 183 LRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLH 257 (259)
Q Consensus 183 ~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i~h 257 (259)
.+|++++.++|+|..|+|+|| +|+++|+.|+++|.++|+++|+|++|++++.+++ +..+..+|++| +||
T Consensus 114 ~~C~~~s~~~e~f~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k--~~~i~~lP~vL-ii~ 182 (327)
T cd02664 114 LNCNSTSARTERFRDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEK--EMKVTGAPEYL-ILT 182 (327)
T ss_pred CCCCCEecccccceeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCccceeE--EEEcccCChhh-EEE
Confidence 999999999999999999998 7999999999999999999999999999998887 45556666664 555
No 10
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-38 Score=273.08 Aligned_cols=199 Identities=25% Similarity=0.450 Sum_probs=161.5
Q ss_pred CccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHh
Q 025024 21 RYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKK 100 (259)
Q Consensus 21 ~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~ 100 (259)
|++||.|+||||||||+||+|+++|+|+++++..... .......++.++|+.+|.+|+.+... .+.|..+......
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~--~~~~~~~~~~~~l~~lf~~~~~~~~~--~~~~~~~~~~~~~ 76 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPT--EDDDDNKSVPLALQRLFLFLQLSESP--VKTTELTDKTRSF 76 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCc--ccCcccccHHHHHHHHHHHHHhCCcc--ccCcchhheeccC
Confidence 5899999999999999999999999999999986322 22334567999999999999987543 2444444312222
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeee
Q 025024 101 QNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNET 180 (259)
Q Consensus 101 ~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i 180 (259)
.+..|..+.||||+||+..||+.|++++... ...++|.++|+|.+...+
T Consensus 77 ~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-------------------------------~~~~~i~~lF~g~~~~~~ 125 (334)
T cd02659 77 GWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-------------------------------GQEGLIKNLFGGKLVNYI 125 (334)
T ss_pred CCCCCCcccchhHHHHHHHHHHHHHHHhccC-------------------------------cccchhhhhCceEEEeEE
Confidence 2356788999999999999999999887531 123569999999999999
Q ss_pred eeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchheecc
Q 025024 181 RCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLH 257 (259)
Q Consensus 181 ~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i~h 257 (259)
+|..|++.+...++|+.|+|+++...+|+++|+.|+.+|.++|.+.|.|++|++++.+.+ +..+..+|++ |++|
T Consensus 126 ~C~~C~~~s~~~e~f~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k--~~~i~~lP~v-Lii~ 199 (334)
T cd02659 126 ICKECPHESEREEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEK--GVCFKKLPPV-LTLQ 199 (334)
T ss_pred EecCCCceecccccceEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEE--EEEeecCCCE-EEEE
Confidence 999999999999999999999998899999999999999999999999999999988876 2344555555 5555
No 11
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.9e-38 Score=265.83 Aligned_cols=193 Identities=26% Similarity=0.375 Sum_probs=159.5
Q ss_pred ccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhhcc
Q 025024 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (259)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~~ 103 (259)
||.|+||||||||+||+|+++|+|+++++..............+++++|++||..|+.+.. .++|..|+..++...+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~---~i~p~~~~~~l~~~~~ 77 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQE---PVPPIEFLQLLRMAFP 77 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCCC---cCCcHHHHHHHHHHCc
Confidence 8999999999999999999999999999876433212334567899999999999998643 5999999999999888
Q ss_pred cc------CCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeee
Q 025024 104 LF------RSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILT 177 (259)
Q Consensus 104 ~f------~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~ 177 (259)
.| ..++||||+||+..||+.|++++... ....++|.++|+|++.
T Consensus 78 ~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~------------------------------~~~~~~i~~~F~g~~~ 127 (305)
T cd02657 78 QFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA------------------------------GSKGSFIDQLFGIELE 127 (305)
T ss_pred CcccccCCCCccccCHHHHHHHHHHHHHHHhccc------------------------------CCCCcHHHHhhceEEE
Confidence 88 45599999999999999999987541 0134679999999999
Q ss_pred eeeeeccCC-CccccccCceEeeeecCCC---CCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchh
Q 025024 178 NETRCLRCE-TVTARDETFFDLSLDIEQN---SSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIV 253 (259)
Q Consensus 178 ~~i~C~~C~-~~s~~~e~f~~L~L~i~~~---~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l 253 (259)
+.++|..|+ .++.+.|+|..|+|+|+.. .+|+++|+.+++.+.. ..|+.|+....+++ +..+..+|++
T Consensus 128 ~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k--~~~i~~lP~v- 199 (305)
T cd02657 128 TKMKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTK--TSRISRLPKY- 199 (305)
T ss_pred EEEEcCCCCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEE--EEEeccCCcE-
Confidence 999999999 7999999999999999876 6899999999987655 57999988777666 2344445444
Q ss_pred eecc
Q 025024 254 VVLH 257 (259)
Q Consensus 254 ~i~h 257 (259)
|++|
T Consensus 200 Lii~ 203 (305)
T cd02657 200 LTVQ 203 (305)
T ss_pred EEEE
Confidence 5555
No 12
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=260.62 Aligned_cols=233 Identities=23% Similarity=0.322 Sum_probs=181.3
Q ss_pred CCCccccccccchhHHHHHHHHhhCCHHHHHHHHHh-hc---CCCCCCcchh-hHHHHHHHHHHHHHhcccCccccCcHH
Q 025024 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDY-YS---NNKNLGDAEE-NLLTCLADLFTQIRAQKKKTGVIAPKR 93 (259)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~-~~---~~~~~~~~~~-~~~~~l~~l~~~l~~~~~~~~~~~p~~ 93 (259)
.-++.||+|.|||||||++||||+++..+...+... +. +...+.+..+ .....|.-++.-+...... .++|+.
T Consensus 68 n~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~--sis~~n 145 (415)
T COG5533 68 NLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPK--SISPRN 145 (415)
T ss_pred ccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCc--ccchHH
Confidence 345899999999999999999999999998855432 11 2235555555 4445555555555555444 499999
Q ss_pred HHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCC--ccccCCCCCCCCCCCCCCCccccccc
Q 025024 94 FVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDP--ESSSP--SEKTANGPTNGLANGVRKEPLVTWVH 169 (259)
Q Consensus 94 l~~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~i~ 169 (259)
|+..++..++.|.+..|||+|||+.++||.||++++....+..-. +++.. .+.....-.....|......+.|++.
T Consensus 146 F~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~ 225 (415)
T COG5533 146 FIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVA 225 (415)
T ss_pred HHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHH
Confidence 999999999999999999999999999999999998654332111 11100 11111222344668888888889999
Q ss_pred cccceeeeeeeeeccCCCccccccCceEeeeecCCC--CCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccc
Q 025024 170 KNFQGILTNETRCLRCETVTARDETFFDLSLDIEQN--SSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVT 247 (259)
Q Consensus 170 ~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~~--~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~ 247 (259)
+.|.|+..+++.|..|+++|+++.+|..|.+|++.. ..|+|||++|.++|.+.|+++|.|++|++++.+++ +.-+.
T Consensus 226 ~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K--~~~I~ 303 (415)
T COG5533 226 KTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRK--RMEIL 303 (415)
T ss_pred HHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchh--eEEEE
Confidence 999999999999999999999999999999999864 46999999999999999999999999999999998 44556
Q ss_pred cccchhee
Q 025024 248 DISCIVVV 255 (259)
Q Consensus 248 ~~p~~l~i 255 (259)
++|..|+|
T Consensus 304 ~lP~~LII 311 (415)
T COG5533 304 VLPDVLII 311 (415)
T ss_pred ecCceEEE
Confidence 66666554
No 13
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-37 Score=260.51 Aligned_cols=152 Identities=38% Similarity=0.690 Sum_probs=133.6
Q ss_pred ccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhhcc
Q 025024 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (259)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~~ 103 (259)
||.|+||||||||+||+|+++|+|+++++. +|..|+..+....+
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~------------------------------------~P~~~~~~l~~~~~ 44 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE------------------------------------TPKELFSQVCRKAP 44 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH------------------------------------CHHHHHHHHHHhhH
Confidence 999999999999999999999999999886 57788888888888
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeeeec
Q 025024 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (259)
Q Consensus 104 ~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~C~ 183 (259)
.|..++||||+||+..||+.|+ ++|+++|+|++.++++|.
T Consensus 45 ~f~~~~QqDA~Efl~~lld~l~----------------------------------------~~i~~~F~G~~~~~i~C~ 84 (279)
T cd02667 45 QFKGYQQQDSHELLRYLLDGLR----------------------------------------TFIDSIFGGELTSTIMCE 84 (279)
T ss_pred hhcCCchhhHHHHHHHHHHHHH----------------------------------------HhhhhhcceEEEEEEEcC
Confidence 9999999999999999999997 237889999999999999
Q ss_pred cCCCccccccCceEeeeecCC----CCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchheecc
Q 025024 184 RCETVTARDETFFDLSLDIEQ----NSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLH 257 (259)
Q Consensus 184 ~C~~~s~~~e~f~~L~L~i~~----~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i~h 257 (259)
+|++.+.+.|+|..|+|+++. ..+|++||+.|+.+|.++|+++|.|++|++ +++ +.....+|+ +|++|
T Consensus 85 ~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k--~~~i~~~P~-~Lii~ 156 (279)
T cd02667 85 SCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKK--QYLISKLPP-VLVIH 156 (279)
T ss_pred CCCCEeCccccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eee--EeEhhhCCC-eEEEE
Confidence 999999999999999998763 368999999999999999999999999987 444 234445555 45555
No 14
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-36 Score=268.10 Aligned_cols=204 Identities=23% Similarity=0.350 Sum_probs=152.7
Q ss_pred CCCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHH
Q 025024 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRL 98 (259)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~ 98 (259)
.+|++||.|+||||||||+||+|+++|+||++++...... .......+++++|+.+++.+|++......++|..|+.++
T Consensus 116 ~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~-~~~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~fl~~l 194 (440)
T cd02669 116 LPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYE-NIKDRKSELVKRLSELIRKIWNPRNFKGHVSPHELLQAV 194 (440)
T ss_pred cCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccc-cccCCCcHHHHHHHHHHHHHhccccCCCccCHHHHHHHH
Confidence 4679999999999999999999999999999999754321 112345689999999999999875434579999999999
Q ss_pred Hhhc-cccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeee
Q 025024 99 KKQN-ELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILT 177 (259)
Q Consensus 99 ~~~~-~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~ 177 (259)
.... +.|.++.||||+|||.+|||.||+++.... ....++|+++|+|+++
T Consensus 195 ~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~-----------------------------~~~~~ii~~~F~G~l~ 245 (440)
T cd02669 195 SKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK-----------------------------KPNSSIIHDCFQGKVQ 245 (440)
T ss_pred HhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC-----------------------------CCCCCcceeccCceEE
Confidence 8754 578999999999999999999999886421 1245889999999999
Q ss_pred eeeeeccCC---------------CccccccCceEeeeecCCCCCH-----HHHHhhccccceeCCCCccccccCCCcce
Q 025024 178 NETRCLRCE---------------TVTARDETFFDLSLDIEQNSSI-----TSCLKNFSSTETLNAEDKFFCDKCCRLVI 237 (259)
Q Consensus 178 ~~i~C~~C~---------------~~s~~~e~f~~L~L~i~~~~sL-----~~~L~~~~~~e~l~~~~~~~C~~C~~~~~ 237 (259)
+.++|..|. .++++.+||+.|+|+||....+ ..+|..+...|-+++ |.|++|...+.
T Consensus 246 ~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~k---y~~~~c~~~~~ 322 (440)
T cd02669 246 IETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLKK---YDGKTETELKD 322 (440)
T ss_pred EEEEeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHHh---cCCccceeccc
Confidence 999987654 2457789999999999864211 112222222222332 77888888777
Q ss_pred eeeeeccccccccchheeccc
Q 025024 238 YTYICKSSVTDISCIVVVLHY 258 (259)
Q Consensus 238 ~~~~~~~~~~~~p~~l~i~h~ 258 (259)
+++ +..+..+|++ ||+|+
T Consensus 323 a~k--~~~I~~LP~v-LiihL 340 (440)
T cd02669 323 SLK--RYLISRLPKY-LIFHI 340 (440)
T ss_pred ceE--EEEEeeCCcE-EEEEE
Confidence 776 3445555555 66664
No 15
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-34 Score=247.34 Aligned_cols=196 Identities=27% Similarity=0.417 Sum_probs=167.2
Q ss_pred CCCCccchhhhcCCCCCCCCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhc-CCCCCCcchhhHHHHHHHHHHHHH
Q 025024 2 GAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYS-NNKNLGDAEENLLTCLADLFTQIR 80 (259)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~-~~~~~~~~~~~~~~~l~~l~~~l~ 80 (259)
.+.|.+++|+|+|. .+||+|+||+||+|||+|+|+++|.|....+.... -...+.+...++.++|.+|.+.|.
T Consensus 293 ~esg~~l~p~~gpg------ytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~ 366 (763)
T KOG0944|consen 293 EESGAPLEPLFGPG------YTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGML 366 (763)
T ss_pred ccCCCccccccCCC------ccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhh
Confidence 46788888888877 99999999999999999999999999887776521 123455667889999999999999
Q ss_pred hcccCc--------cccCcHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCC
Q 025024 81 AQKKKT--------GVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPT 152 (259)
Q Consensus 81 ~~~~~~--------~~~~p~~l~~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (259)
+++... ..++|..|+..+++.++.|...+||||+|||.+||+.|.+.....
T Consensus 367 sgkys~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~--------------------- 425 (763)
T KOG0944|consen 367 SGKYSKPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSS--------------------- 425 (763)
T ss_pred cCcccCccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhccccc---------------------
Confidence 876444 259999999999999999999999999999999999986533211
Q ss_pred CCCCCCCCCCccccccccccceeeeeeeeeccCCCccccccCceEeeeecCC------CCCHHHHHhhccccceeCCCCc
Q 025024 153 NGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQ------NSSITSCLKNFSSTETLNAEDK 226 (259)
Q Consensus 153 ~~~~~~~~~~~~~s~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~------~~sL~~~L~~~~~~e~l~~~~~ 226 (259)
...++++|...+..++.|..|+.+++++++-..+.|+++. +.++..||+.||.+ .+++
T Consensus 426 ------------~~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~d--- 489 (763)
T KOG0944|consen 426 ------------LPNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDD--- 489 (763)
T ss_pred ------------CCCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchh---
Confidence 0338999999999999999999999999999999999873 46999999999999 5554
Q ss_pred cccccCCCcceeee
Q 025024 227 FFCDKCCRLVIYTY 240 (259)
Q Consensus 227 ~~C~~C~~~~~~~~ 240 (259)
|+|..||.+..+++
T Consensus 490 f~s~ac~~K~~a~k 503 (763)
T KOG0944|consen 490 FWSTACGEKKGATK 503 (763)
T ss_pred hhhHhhcCcccccc
Confidence 99999999998888
No 16
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-33 Score=251.36 Aligned_cols=235 Identities=27% Similarity=0.390 Sum_probs=180.8
Q ss_pred CCCCccccccccchhHHHHHHHHhhCCHHHHHHHHHh-hcCCCC--CCcchhhHHHHHHHHHHHHHhcccCccccCcHHH
Q 025024 18 EGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDY-YSNNKN--LGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRF 94 (259)
Q Consensus 18 ~~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~-~~~~~~--~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l 94 (259)
...+++||+|+|||||||++||||+.++.|+..++.. +..... .......+..++..++..++..... ..+.|+.|
T Consensus 297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~~~-~s~~P~~f 375 (653)
T KOG1868|consen 297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGHGQ-FSVLPRRF 375 (653)
T ss_pred cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCCCc-eecCcHHH
Confidence 3466999999999999999999999999999555543 222112 3334567888888888888876432 35899999
Q ss_pred HHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCCcc--ccCCCCCCCCCCCCCCCcccccccc
Q 025024 95 VQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDP--ESSSPSE--KTANGPTNGLANGVRKEPLVTWVHK 170 (259)
Q Consensus 95 ~~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~i~~ 170 (259)
+..+.+..+.|.++.|||++||+.++++.||++++...+..... ....... ...........|..+....++.|.+
T Consensus 376 ~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~~ 455 (653)
T KOG1868|consen 376 IRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIGD 455 (653)
T ss_pred HHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHHH
Confidence 99999999999999999999999999999999999865431111 1110000 0111111112233334455566999
Q ss_pred ccceeeeeeeeeccCCCccccccCceEeeeecCCC------CCHHHHHhhccccceeCCCCccccccCCCcceee--eee
Q 025024 171 NFQGILTNETRCLRCETVTARDETFFDLSLDIEQN------SSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYT--YIC 242 (259)
Q Consensus 171 lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~~------~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~--~~~ 242 (259)
+|.|++++.++|..|++.+.++++|.+|+|+||.. .+|++|++.|++.|+++|++.|.|++|+++...+ +
T Consensus 456 lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK-- 533 (653)
T KOG1868|consen 456 LFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLK-- 533 (653)
T ss_pred HHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccc--
Confidence 99999999999999999999999999999999853 4699999999999999999999999999988885 5
Q ss_pred ccccccccchhee
Q 025024 243 KSSVTDISCIVVV 255 (259)
Q Consensus 243 ~~~~~~~p~~l~i 255 (259)
+..++.+|++|++
T Consensus 534 ~~~i~~lp~iLii 546 (653)
T KOG1868|consen 534 KLTILRLPKILII 546 (653)
T ss_pred eeeeecCCHHHHH
Confidence 4677888887764
No 17
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-32 Score=234.42 Aligned_cols=171 Identities=21% Similarity=0.337 Sum_probs=135.4
Q ss_pred ccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCC-----------CC-Cc-------chhhHHHHHHHHHHHHHhc
Q 025024 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNK-----------NL-GD-------AEENLLTCLADLFTQIRAQ 82 (259)
Q Consensus 22 ~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~-----------~~-~~-------~~~~~~~~l~~l~~~l~~~ 82 (259)
++||.|+||||||||+||+|+++|+||++++.+..... .. .. ...+++.+|++||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999998642210 00 00 1236999999999999977
Q ss_pred ccCccccCcHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCC
Q 025024 83 KKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKE 162 (259)
Q Consensus 83 ~~~~~~~~p~~l~~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (259)
.. ..+.|..++..+. ..||||+||+..||++||.++........ + .......
T Consensus 81 ~~--~~v~P~~~l~~l~--------~~QQDa~Ef~~~lld~Le~~lk~~~~~~~------~------------~~~~~~~ 132 (343)
T cd02666 81 NT--RSVTPSKELAYLA--------LRQQDVTECIDNVLFQLEVALEPISNAFA------G------------PDTEDDK 132 (343)
T ss_pred CC--CccCcHHHHHhcc--------ccccchHHHHHHHHHHHHHHhcCcccccc------C------------ccccccc
Confidence 43 3699999988765 29999999999999999998874321110 0 0000112
Q ss_pred ccccccccccceeeeeeeeeccCC---CccccccCceEeeeecCC----------CCCHHHHHhhccccce
Q 025024 163 PLVTWVHKNFQGILTNETRCLRCE---TVTARDETFFDLSLDIEQ----------NSSITSCLKNFSSTET 220 (259)
Q Consensus 163 ~~~s~i~~lF~g~~~~~i~C~~C~---~~s~~~e~f~~L~L~i~~----------~~sL~~~L~~~~~~e~ 220 (259)
...++|.++|+|++.+.++|..|+ ..+.+.|+|+.|+|+|+. ..+|+++|+.|++.|.
T Consensus 133 ~~~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~ 203 (343)
T cd02666 133 EQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS 203 (343)
T ss_pred chhhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh
Confidence 345889999999999999999997 788999999999999985 5899999999998887
No 18
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=2e-31 Score=218.31 Aligned_cols=113 Identities=40% Similarity=0.722 Sum_probs=104.3
Q ss_pred ccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhhcc
Q 025024 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (259)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~~ 103 (259)
||+|+||||||||+||+|+++|+|++++....
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999999988642
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeeeec
Q 025024 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (259)
Q Consensus 104 ~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~C~ 183 (259)
.|||||||+..||+.|+. .+.++|.|++.+.++|.
T Consensus 33 -----~QqDa~EFl~~ll~~l~~----------------------------------------~i~~~F~g~~~~~i~C~ 67 (240)
T cd02662 33 -----EQQDAHELFQVLLETLEQ----------------------------------------LLKFPFDGLLASRIVCL 67 (240)
T ss_pred -----hhcCHHHHHHHHHHHHHH----------------------------------------hccCccccEEEEEEEeC
Confidence 999999999999999981 16789999999999999
Q ss_pred cCCCccc-cccCceEeeeecCCC-----CCHHHHHhhccccceeCCCCccccccC
Q 025024 184 RCETVTA-RDETFFDLSLDIEQN-----SSITSCLKNFSSTETLNAEDKFFCDKC 232 (259)
Q Consensus 184 ~C~~~s~-~~e~f~~L~L~i~~~-----~sL~~~L~~~~~~e~l~~~~~~~C~~C 232 (259)
.|++.+. ++|+|+.|+|+||.. .+|+++|+.|+++|.++| |.|++|
T Consensus 68 ~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~---~~C~~C 119 (240)
T cd02662 68 QCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC 119 (240)
T ss_pred CCCCccCcceeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccC---cCCCCC
Confidence 9999876 599999999999975 599999999999999987 999999
No 19
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-30 Score=228.90 Aligned_cols=200 Identities=26% Similarity=0.476 Sum_probs=175.1
Q ss_pred CCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCC-CcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHH
Q 025024 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNL-GDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRL 98 (259)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~ 98 (259)
.+++||+|-|+|||||+++|-++++|.+++.++........+ -..+..+++.++.+|.++..+.- ...-|..|.+.+
T Consensus 93 ~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s~l--QyyVPeg~Wk~F 170 (944)
T KOG1866|consen 93 EGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAASQL--QYYVPEGFWKQF 170 (944)
T ss_pred cceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHHhh--hhhcchhHHHHh
Confidence 569999999999999999999999999999998876552211 12234499999999999998754 368899999999
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeee
Q 025024 99 KKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTN 178 (259)
Q Consensus 99 ~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~ 178 (259)
+-.+...+..+||||-||++.|||.+++.+++... ..++..-|+|....
T Consensus 171 r~~~~pln~reqhDA~eFf~sLld~~De~LKklg~-------------------------------p~lf~n~f~G~ysd 219 (944)
T KOG1866|consen 171 RLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGH-------------------------------PQLFSNTFGGSYSD 219 (944)
T ss_pred hccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCC-------------------------------cHHHHHHhcCccch
Confidence 98888889999999999999999999998876532 24578899999999
Q ss_pred eeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchhee
Q 025024 179 ETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVV 255 (259)
Q Consensus 179 ~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i 255 (259)
+.+|.+|-|.-...|+|+.|+|+|. ..+|+++|+.|.+.|.+.|+|.|+||+|++|....+ ++.+..+||+|.|
T Consensus 220 qKIC~~CpHRY~~eE~F~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~Tvk--Rt~ik~LPsvl~I 293 (944)
T KOG1866|consen 220 QKICQGCPHRYECEESFTTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVK--RTCIKKLPSVLAI 293 (944)
T ss_pred hhhhccCCcccCccccceeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHH--HHHHhhCChhhee
Confidence 9999999999999999999999999 699999999999999999999999999999888887 6788888888776
No 20
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=9.4e-30 Score=207.49 Aligned_cols=125 Identities=38% Similarity=0.650 Sum_probs=112.6
Q ss_pred ccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhhcc
Q 025024 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (259)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~~ 103 (259)
||.|.||+||+||+||+|.+
T Consensus 1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------ 20 (230)
T cd02674 1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20 (230)
T ss_pred CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence 99999999999999999998
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeeeec
Q 025024 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (259)
Q Consensus 104 ~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~C~ 183 (259)
.||||+||+.+||+.|+ +.|.++|+|++..+++|.
T Consensus 21 -----~QqDa~Ef~~~ll~~l~----------------------------------------~~i~~~F~~~~~~~~~C~ 55 (230)
T cd02674 21 -----DQQDAQEFLLFLLDGLH----------------------------------------SIIVDLFQGQLKSRLTCL 55 (230)
T ss_pred -----hhhhHHHHHHHHHHHHh----------------------------------------hhHHheeCCEEeCcEEcC
Confidence 89999999999999998 127889999999999999
Q ss_pred cCCCccccccCceEeeeecCCC------CCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchhee
Q 025024 184 RCETVTARDETFFDLSLDIEQN------SSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVV 255 (259)
Q Consensus 184 ~C~~~s~~~e~f~~L~L~i~~~------~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i 255 (259)
+|++.+...|+|+.|+|++|.. .+|+++|+.++.+|.++|.++++|++|++++.+.+ +.....+|++|++
T Consensus 56 ~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~--~~~i~~lP~iLii 131 (230)
T cd02674 56 TCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATK--KLTISRLPKVLII 131 (230)
T ss_pred CCcCCcceecceeEEEEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEE--EEEEecCChhhEe
Confidence 9999999999999999999864 49999999999999999999999999999998887 3445566666543
No 21
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.2e-29 Score=211.12 Aligned_cols=195 Identities=23% Similarity=0.371 Sum_probs=158.5
Q ss_pred ccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCC-CCCcchhhHHHHHHHHHHHHHhcccC--ccccCcHHHHHHH
Q 025024 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNK-NLGDAEENLLTCLADLFTQIRAQKKK--TGVIAPKRFVQRL 98 (259)
Q Consensus 22 ~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~~p~~l~~~~ 98 (259)
.+||.|+||+||+||++|.|+....+...+....+... .......++.|+|.+|...|....+. -..++|..|...+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk~~i 382 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLI 382 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCCccccCCcChhhHHHHH
Confidence 89999999999999999999998887766654433211 22234578999999999998876421 1249999999999
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeee
Q 025024 99 KKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTN 178 (259)
Q Consensus 99 ~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~ 178 (259)
+..++.|...+||||+|||.+||+.|...+... ..++|.++|...+..
T Consensus 383 gq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~--------------------------------~~~~It~lf~Fe~e~ 430 (749)
T COG5207 383 GQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSY--------------------------------LIPPITSLFEFEVER 430 (749)
T ss_pred cCCchhhhhhhhhhHHHHHHHHHHHHhhccchh--------------------------------cCCCcchhhhhhhcc
Confidence 999999999999999999999999986543221 235699999999999
Q ss_pred eeeeccCCCccccccCceEeeeecCCC---CCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchhe
Q 025024 179 ETRCLRCETVTARDETFFDLSLDIEQN---SSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVV 254 (259)
Q Consensus 179 ~i~C~~C~~~s~~~e~f~~L~L~i~~~---~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~ 254 (259)
++.|..|+.++++|++...+.+++.+. .++.++++.||.+..+. |.|+.||.+..+++ +.....+|..|+
T Consensus 431 rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~--k~~~kslPk~LI 503 (749)
T COG5207 431 RLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASR--KPFIKSLPKYLI 503 (749)
T ss_pred eecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccc--cchhhccCceeE
Confidence 999999999999999999999988653 78999999999999998 99999999888887 333344444433
No 22
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.2e-28 Score=232.77 Aligned_cols=199 Identities=23% Similarity=0.387 Sum_probs=168.4
Q ss_pred CCCCCc-cccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHH
Q 025024 17 PEGERY-FGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFV 95 (259)
Q Consensus 17 ~~~~~~-~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~ 95 (259)
.+.++. +||.|.||||||||+||+|+.+|.||+.+.+.... ....+....+..+|++||..|+.++.+ ++++.++.
T Consensus 164 k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~-~~~~~~~~~v~~~lq~lF~~LQ~s~~k--~Vdt~~~~ 240 (1093)
T KOG1863|consen 164 KRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPF-TGHEDPRRSIPLALQRLFYELQMSKRK--YVDTSELT 240 (1093)
T ss_pred hhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCC-CCcccccchHHHHHHHHHHHHhhcCCC--CcCchhhh
Confidence 334555 99999999999999999999999999999998641 122333445899999999999998654 69999999
Q ss_pred HHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCcccccccccccee
Q 025024 96 QRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGI 175 (259)
Q Consensus 96 ~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~ 175 (259)
..+.... ..++.|||++||+..|+|.|++.+..... .+.|.++|.|.
T Consensus 241 ~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~-------------------------------~~~l~~lf~g~ 287 (1093)
T KOG1863|consen 241 KSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV-------------------------------ENTLQDLFTGK 287 (1093)
T ss_pred hhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh-------------------------------hhhhhhhhcCC
Confidence 9998654 56789999999999999999988876542 14589999999
Q ss_pred eeeeeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchhe
Q 025024 176 LTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVV 254 (259)
Q Consensus 176 ~~~~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~ 254 (259)
+.+.+.|..|...+.+.|.|+++.|++.+..+|+++|+.|+..|.++|+|+ +|+.|.+.+.+.+- ..-..+||+|.
T Consensus 288 ~~~~i~c~~~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~--~~f~~lPpvl~ 363 (1093)
T KOG1863|consen 288 MKSVIKCIDVDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKG--VLFDSLPPVLF 363 (1093)
T ss_pred cceEEEEEeeeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcc--eeeccCCchhh
Confidence 999999999999999999999999999999999999999999999999999 79999999998872 23344555543
No 23
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-28 Score=216.44 Aligned_cols=199 Identities=21% Similarity=0.387 Sum_probs=163.3
Q ss_pred CCCCCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHH
Q 025024 17 PEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQ 96 (259)
Q Consensus 17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~ 96 (259)
.+-+|.+||+|.|.||||||+||+|+++..||+.+...+.. ++ ...+.+.-+|+++|..|+.+.. +++..+|.+
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd--~p-~grdSValaLQr~Fynlq~~~~---PvdTteltr 261 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTD--HP-RGRDSVALALQRLFYNLQTGEE---PVDTTELTR 261 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCC--CC-CccchHHHHHHHHHHHHhccCC---CcchHHhhh
Confidence 44488999999999999999999999999999998886543 22 2335688999999999998843 599999988
Q ss_pred HHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceee
Q 025024 97 RLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGIL 176 (259)
Q Consensus 97 ~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~ 176 (259)
.++. ..+....|||.|||...|.|.|+..++... -.+.++.+|-|.+
T Consensus 262 sfgW--ds~dsf~QHDiqEfnrVl~DnLEksmrgt~-------------------------------VEnaln~ifVgkm 308 (1089)
T COG5077 262 SFGW--DSDDSFMQHDIQEFNRVLQDNLEKSMRGTV-------------------------------VENALNGIFVGKM 308 (1089)
T ss_pred hcCc--ccchHHHHHhHHHHHHHHHHHHHHhhcCCh-------------------------------hhhHHhHHHHHHh
Confidence 8774 456788999999999999999976443321 2255899999999
Q ss_pred eeeeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeee--eeccccccccchhe
Q 025024 177 TNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTY--ICKSSVTDISCIVV 254 (259)
Q Consensus 177 ~~~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~--~~~~~~~~~p~~l~ 254 (259)
++-++|.+-.++|.+.|.||++.|++.+..+|+|+++.|.+.|.++|+|+|.|++-| .+.|.+ ++.++|.++-.+|-
T Consensus 309 ksyikCvnvnyEsarvedfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLK 387 (1089)
T COG5077 309 KSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLK 387 (1089)
T ss_pred hceeeEEEechhhhhHHHHHHHHhcccchhhHHHHHHHhhhheeccCCccccccccc-chhhccceeeccCchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999975 555554 33444444444443
Q ss_pred e
Q 025024 255 V 255 (259)
Q Consensus 255 i 255 (259)
.
T Consensus 388 R 388 (1089)
T COG5077 388 R 388 (1089)
T ss_pred H
Confidence 3
No 24
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.9e-27 Score=207.04 Aligned_cols=214 Identities=25% Similarity=0.408 Sum_probs=176.0
Q ss_pred CCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHH
Q 025024 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLK 99 (259)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~ 99 (259)
.++.||+|.|+||+||++||.|.+.|..+...+...+..........++.+++.++++.++++.. ..++.|..++..++
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~-~~~~sp~~~l~~~~ 237 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHN-RTPYSPFELLNLVW 237 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCC-CCCcChHHHHHHHH
Confidence 56999999999999999999999999999888887776334444478999999999999999963 45799999999999
Q ss_pred hhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeee
Q 025024 100 KQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNE 179 (259)
Q Consensus 100 ~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~ 179 (259)
+..+.+.++.|||||||+..+++.+|.+...-.+... .........++++.+|.|++.+.
T Consensus 238 k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~~--------------------~~~~~~~c~~iv~~~F~G~L~~~ 297 (492)
T KOG1867|consen 238 KHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSLI--------------------ASQSNKQCPCIVHTIFSGTLQSD 297 (492)
T ss_pred HhCcccccccccchHHHHHHhcccccccccccccccc--------------------cccCCcccccccceeecceeccc
Confidence 9999999999999999999999999987711000000 00000135688999999999999
Q ss_pred eeeccCCCccccccCceEeeeecCCC----------CCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccc
Q 025024 180 TRCLRCETVTARDETFFDLSLDIEQN----------SSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDI 249 (259)
Q Consensus 180 i~C~~C~~~s~~~e~f~~L~L~i~~~----------~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~ 249 (259)
++|..|+..+..+++|++++|+||.. .++.+|++.+...|....+.++.|..|+.++.+++ +....++
T Consensus 298 v~c~~c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~k--ql~~~~l 375 (492)
T KOG1867|consen 298 VTCQTCGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTK--QLTIRKL 375 (492)
T ss_pred eeehhhcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCccccccccc--ccccccC
Confidence 99999999999999999999999853 56999999999999988889999999999999998 3333444
Q ss_pred cchheecc
Q 025024 250 SCIVVVLH 257 (259)
Q Consensus 250 p~~l~i~h 257 (259)
|.++.+|
T Consensus 376 -P~~l~~~ 382 (492)
T KOG1867|consen 376 -PAVLCLH 382 (492)
T ss_pred -Cceeeee
Confidence 4444444
No 25
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.94 E-value=2.1e-26 Score=194.43 Aligned_cols=203 Identities=23% Similarity=0.308 Sum_probs=170.2
Q ss_pred cccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHH-hcccCccccCcHHHHHHHHhh
Q 025024 23 FGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIR-AQKKKTGVIAPKRFVQRLKKQ 101 (259)
Q Consensus 23 ~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~p~~l~~~~~~~ 101 (259)
+||.|.+++||+||+||+|+++|++++.++... .+..+.|++|+|+.||++|. .+. +....+..|.++++..
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-----~c~~e~cL~cELgfLf~ml~~~~~--g~~cq~sNflr~l~~~ 73 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-----ECPKEFCLLCELGFLFDMLDSKAK--GINCQASNFLRALSWI 73 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-----CCCccccHHHHHHHHHHHhhhhcC--CCcChHHHHHHHHhcC
Confidence 599999999999999999999999999999864 25668899999999999999 653 4468899999999988
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeee
Q 025024 102 NELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETR 181 (259)
Q Consensus 102 ~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~ 181 (259)
....+.+.|+|+++|+.+|+++|+.++......... ..........+.|.++|+......++
T Consensus 74 ~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~~~i~~~f~~~~~~~~~ 135 (295)
T PF13423_consen 74 PEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFH------------------TSENSSSSPESSISQLFGTSFETTIR 135 (295)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHhHHHHhcCccccc------------------ccccccCCCcchHHHHhCcceeeeec
Confidence 766777889999999999999999998876543210 00001112346799999999999999
Q ss_pred eccCCCccccccCceEeeeecCC---CCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchhee
Q 025024 182 CLRCETVTARDETFFDLSLDIEQ---NSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVV 255 (259)
Q Consensus 182 C~~C~~~s~~~e~f~~L~L~i~~---~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i 255 (259)
|..|++++.+.+....+.|..|. ..++.++|+.++..|.... .+|++|++.+..+. +..+..+||||.|
T Consensus 136 c~~c~~~~~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~--~r~i~~LPpVL~I 207 (295)
T PF13423_consen 136 CTSCGHESVKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQ--RRTIRSLPPVLSI 207 (295)
T ss_pred ccccCCeEEeecceeeeeccCCCCCccchHHHHHHHHHhhccccc---ccccccccccceee--eeeccCCCcEEEE
Confidence 99999999999999999998876 4799999999999999986 99999999887776 5667888988876
No 26
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.93 E-value=9.8e-26 Score=186.97 Aligned_cols=148 Identities=32% Similarity=0.516 Sum_probs=117.8
Q ss_pred ccccccccchhHHHHHHHHhhCCHHHHHHHHHh----hcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHH
Q 025024 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLDY----YSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQR 97 (259)
Q Consensus 22 ~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~----~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~ 97 (259)
++||.|.|||||+||+||+|+++|+|++++... ............+++++|+.+|..|+........+.|..+..+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999975 1112234445567999999999999998545557999999999
Q ss_pred HHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeee
Q 025024 98 LKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILT 177 (259)
Q Consensus 98 ~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~ 177 (259)
++...+.|..+.||||+||+..||+.|++++...... ..+........+++.++|++.+.
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~f~~~~~ 140 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFKR--------------------KSWKNTNSSEDSLISDLFGGQFE 140 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSSH--------------------HHHHHHHCCEESHHHHHH-EEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhcccccc--------------------ccccccccccccccccccccccc
Confidence 9999999999999999999999999999888653210 00011112356789999999999
Q ss_pred eeeeeccCCCcc
Q 025024 178 NETRCLRCETVT 189 (259)
Q Consensus 178 ~~i~C~~C~~~s 189 (259)
..++|..|+...
T Consensus 141 ~~~~c~~c~~~~ 152 (269)
T PF00443_consen 141 SSIKCSSCKNSQ 152 (269)
T ss_dssp EEEEETTTTCEE
T ss_pred cccccccccccc
Confidence 999999999874
No 27
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=1e-25 Score=184.15 Aligned_cols=150 Identities=23% Similarity=0.271 Sum_probs=113.3
Q ss_pred cccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhhccc
Q 025024 25 LENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNEL 104 (259)
Q Consensus 25 L~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~~~ 104 (259)
|.|.||.||+||.+|+|.++ ++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i------------------------------------------------------~~~~~~ 27 (245)
T cd02673 2 LVNTGNSCYFNSTMQALSSI------------------------------------------------------GKINTE 27 (245)
T ss_pred ceecCCeeeehhHHHHHHHH------------------------------------------------------hhhhhh
Confidence 78999999999999997531 122356
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeeeecc
Q 025024 105 FRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLR 184 (259)
Q Consensus 105 f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~C~~ 184 (259)
|.+++||||||||.+|||.|++++............ ......+.++|+|.+++.++|..
T Consensus 28 F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~F~~~l~s~i~C~~ 86 (245)
T cd02673 28 FDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNI---------------------EIKRLNPLEAFKYTIESSYVCIG 86 (245)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcc---------------------cccccCHhHheeeEEEeEEEecC
Confidence 899999999999999999999988653222110000 00111245789999999999999
Q ss_pred CCCccccccCceEeeeecCCC--CCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchheecc
Q 025024 185 CETVTARDETFFDLSLDIEQN--SSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLH 257 (259)
Q Consensus 185 C~~~s~~~e~f~~L~L~i~~~--~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i~h 257 (259)
|++++.+.|+|+.|+|+++.. .+++++++.|.+.+.++ |+|++|+++ .+.+ +..+..+|++| +||
T Consensus 87 C~~~s~~~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k--~~~i~~~P~vL-~i~ 153 (245)
T cd02673 87 CSFEENVSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAIS--SERIMTFPECL-SIN 153 (245)
T ss_pred CCCeeeeccccceeccccccCCcchHHHHHHHhhcccccC----ccCCCCCCc-ccee--echhhhCChhh-EEe
Confidence 999999999999999999874 67889999998888875 899999876 4555 23456666654 554
No 28
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.90 E-value=8.2e-24 Score=169.95 Aligned_cols=112 Identities=27% Similarity=0.353 Sum_probs=95.2
Q ss_pred ccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhhcc
Q 025024 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (259)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~~ 103 (259)
||.|.|||||+|++.|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 20 (228)
T cd02665 1 GLKNVGNTCWFSAVIQSLFS------------------------------------------------------------ 20 (228)
T ss_pred CccccCcchhHHHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999997
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeeeec
Q 025024 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (259)
Q Consensus 104 ~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~C~ 183 (259)
.||||+||+..||+.|++++........ ...+..++|.++|+|++.+++.|
T Consensus 21 -----~QQDa~Ef~~~Lld~Le~~l~~~~~~~~-----------------------~~~~~~~~i~~lF~G~~~~~~~~- 71 (228)
T cd02665 21 -----QQQDVSEFTHLLLDWLEDAFQAAAEAIS-----------------------PGEKSKNPMVQLFYGTFLTEGVL- 71 (228)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhcccccccc-----------------------ccccccchHhhceEEEEEEEEEE-
Confidence 7999999999999999999874321100 11124578999999999987776
Q ss_pred cCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCC
Q 025024 184 RCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAED 225 (259)
Q Consensus 184 ~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~ 225 (259)
|+..+.+.|+|+.|+|+|.+..+|++||+.++.+|.+.+++
T Consensus 72 -~~~~s~~~E~F~~L~l~i~~~~~L~e~L~~~~~ee~l~~~~ 112 (228)
T cd02665 72 -EGKPFCNCETFGQYPLQVNGYGNLHECLEAAMFEGEVELLP 112 (228)
T ss_pred -CCCcccccCccEEEEEEECCCCCHHHHHHHhhhhccccccc
Confidence 77888999999999999999899999999999999998743
No 29
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.89 E-value=2.1e-23 Score=170.96 Aligned_cols=138 Identities=36% Similarity=0.575 Sum_probs=111.0
Q ss_pred ccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhhcc
Q 025024 24 GLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNE 103 (259)
Q Consensus 24 GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~~ 103 (259)
||.|.||+||+||+||+|++
T Consensus 1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------ 20 (255)
T cd02257 1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20 (255)
T ss_pred CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence 89999999999999999998
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeeeec
Q 025024 104 LFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCL 183 (259)
Q Consensus 104 ~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~C~ 183 (259)
.||||+||+..+|+.|+.++....... .......+.|.++|+|.+...+.|.
T Consensus 21 -----~q~Da~E~l~~ll~~l~~~~~~~~~~~-----------------------~~~~~~~~~i~~~F~~~~~~~~~c~ 72 (255)
T cd02257 21 -----EQQDAHEFLLFLLDKLHEELKKSSKRT-----------------------SDSSSLKSLIHDLFGGKLESTIVCL 72 (255)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhcccc-----------------------cccccCCchhhhhcccEEeeEEECC
Confidence 899999999999999999988643320 0111234679999999999999999
Q ss_pred cCCCccccccCceEeeeecCC----CCCHHHHHhhccccceeCCCCccccccCC--Ccceeeeeeccccccccchhe
Q 025024 184 RCETVTARDETFFDLSLDIEQ----NSSITSCLKNFSSTETLNAEDKFFCDKCC--RLVIYTYICKSSVTDISCIVV 254 (259)
Q Consensus 184 ~C~~~s~~~e~f~~L~L~i~~----~~sL~~~L~~~~~~e~l~~~~~~~C~~C~--~~~~~~~~~~~~~~~~p~~l~ 254 (259)
.|+..+.....+..+.|+++. ..+|+++|+.++..|.+.+ +.|..|+ +.+.+.+ +.....+|++|+
T Consensus 73 ~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~--~~~i~~lP~~L~ 144 (255)
T cd02257 73 ECGHESVSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATK--RLKIKKLPPVLI 144 (255)
T ss_pred CCCCCccCcccceeEEeeccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeE--EEecccCCceeE
Confidence 999888887777778887775 3799999999999999988 7888887 4555554 344555555444
No 30
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.7e-23 Score=181.82 Aligned_cols=149 Identities=28% Similarity=0.435 Sum_probs=104.6
Q ss_pred CCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCC-----CCCC-----------cchhhHHHHHHHHHHHHHhcc
Q 025024 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN-----KNLG-----------DAEENLLTCLADLFTQIRAQK 83 (259)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~-----~~~~-----------~~~~~~~~~l~~l~~~l~~~~ 83 (259)
...+||.|+|||||+|||+|.|+.+|.++..|....... ..+. ...+.++.+|.. ...|...
T Consensus 203 ~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e~~e~- 280 (877)
T KOG1873|consen 203 YIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLEMSET- 280 (877)
T ss_pred ccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhhhhhc-
Confidence 348999999999999999999999999999888754331 0011 122345555555 3333333
Q ss_pred cCccccCcHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCc
Q 025024 84 KKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEP 163 (259)
Q Consensus 84 ~~~~~~~p~~l~~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
..+.+.|+.|...+..+.|+|.++.||||||+|+.|||.|..|-.+..++.
T Consensus 281 -~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~---------------------------- 331 (877)
T KOG1873|consen 281 -TKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRKKN---------------------------- 331 (877)
T ss_pred -cCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHHHh----------------------------
Confidence 345799999999999999999999999999999999999987665544432
Q ss_pred cccccccccceeeeeeeeeccCCCccccccCceEeeeecC
Q 025024 164 LVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIE 203 (259)
Q Consensus 164 ~~s~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~ 203 (259)
|...|+|...+...|..|++.+..|++|.+++|++|
T Consensus 332 ----Il~~fG~~t~~l~scle~~q~sKvYe~f~~~~~~vp 367 (877)
T KOG1873|consen 332 ----ILSNFGGETSSLVSCLECGQKSKVYEPFKDLSLPVP 367 (877)
T ss_pred ----HHHhhCccccchhhhhhccchhhcccccccCCcccc
Confidence 344555555555555555555555555555555544
No 31
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.87 E-value=7.3e-23 Score=169.44 Aligned_cols=145 Identities=30% Similarity=0.451 Sum_probs=116.7
Q ss_pred CCCCCCCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHH
Q 025024 15 QFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRF 94 (259)
Q Consensus 15 ~~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l 94 (259)
..-..++++||.|.|.|||+||+||+|+++|+||+.+.+. ...+..+.++.++|+.||. .
T Consensus 8 ~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~----~~~~~~~~~l~~el~~lfs---------------~- 67 (268)
T cd02672 8 EFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAII----LVACPKESCLLCELGYLFS---------------T- 67 (268)
T ss_pred cccccccccccccCCccchHHHHHHHHHhcHHHHHHHHhh----cccCCcCccHHHHHHHHHH---------------H-
Confidence 3455678999999999999999999999999999983322 2445667899999999990 0
Q ss_pred HHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccce
Q 025024 95 VQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQG 174 (259)
Q Consensus 95 ~~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g 174 (259)
=.+-|..+|+++++.+.... .
T Consensus 68 -----------------~iq~F~~fll~~i~~~~~~~----------------------------------~-------- 88 (268)
T cd02672 68 -----------------LIQNFTRFLLETISQDQLGT----------------------------------P-------- 88 (268)
T ss_pred -----------------HHHHHHHHHHHHHHHHhccc----------------------------------C--------
Confidence 12557788888887444210 0
Q ss_pred eeeeeeeeccCCCccccccCceEeeeecCC-----CCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccc
Q 025024 175 ILTNETRCLRCETVTARDETFFDLSLDIEQ-----NSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDI 249 (259)
Q Consensus 175 ~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~-----~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~ 249 (259)
..|++++.+.++++.|+|++|. ..+|++||+.+++.|... +++|++|++++.+++ ++.+..+
T Consensus 89 --------~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k--~~~i~~l 155 (268)
T cd02672 89 --------FSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQ--TTSIRHL 155 (268)
T ss_pred --------CCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEE--EEEeecC
Confidence 6799999999999999999984 369999999999999764 499999999999998 5667778
Q ss_pred cc
Q 025024 250 SC 251 (259)
Q Consensus 250 p~ 251 (259)
|+
T Consensus 156 P~ 157 (268)
T cd02672 156 PD 157 (268)
T ss_pred CC
Confidence 88
No 32
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.9e-23 Score=180.43 Aligned_cols=159 Identities=18% Similarity=0.334 Sum_probs=133.7
Q ss_pred CCCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHH
Q 025024 19 GERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRL 98 (259)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~ 98 (259)
+.+++||.|..-|||+|+.+|+|+-.|.|++.+... .+..+....+.+.+
T Consensus 84 ~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts------------------------------~~~~~et~dlt~sf 133 (1203)
T KOG4598|consen 84 GHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS------------------------------ENDSLETKDLTQSF 133 (1203)
T ss_pred CcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC------------------------------CcccccchhhHhhc
Confidence 366999999999999999999999999999987732 12235555555555
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeee
Q 025024 99 KKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTN 178 (259)
Q Consensus 99 ~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~ 178 (259)
+. ..-..++|||.+|+.+.++|.|+.-++... -...|.++++|.+..
T Consensus 134 gw--~s~ea~~qhdiqelcr~mfdalehk~k~t~-------------------------------~~~li~~ly~g~m~d 180 (1203)
T KOG4598|consen 134 GW--TSNEAYDQHDVQELCRLMFDALEHKWKGTE-------------------------------HEKLIQDLYRGTMED 180 (1203)
T ss_pred CC--CcchhhhhhhHHHHHHHHHHHHHhhhcCch-------------------------------HHHHHHHHhcchHHH
Confidence 42 122468999999999999999976554322 226699999999999
Q ss_pred eeeeccCCCccccccCceEeeeecCC------CCCHHHHHhhccccceeCCCCccccccCCCcceeee
Q 025024 179 ETRCLRCETVTARDETFFDLSLDIEQ------NSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTY 240 (259)
Q Consensus 179 ~i~C~~C~~~s~~~e~f~~L~L~i~~------~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~ 240 (259)
-++|..|+.++++.+.|.+|+|++.. ..+++++|..|.++|.++|.|+|-||+|++++.+.+
T Consensus 181 ~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahk 248 (1203)
T KOG4598|consen 181 FVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHK 248 (1203)
T ss_pred HHHHHHcCccccccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhc
Confidence 99999999999999999999999964 268999999999999999999999999999999998
No 33
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=175.43 Aligned_cols=250 Identities=49% Similarity=0.770 Sum_probs=185.9
Q ss_pred CccchhhhcCCCC---CCCCccccccccchhHHH--HHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHH
Q 025024 5 GSKLEKALGDQFP---EGERYFGLENFGNTCYCN--SVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQI 79 (259)
Q Consensus 5 ~~~~~~~~~~~~~---~~~~~~GL~N~GntCy~N--s~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l 79 (259)
++...+...|..+ .+....|..|.+++|+.| ++.|.+..+-.++...................+...+..++...
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (587)
T KOG1864|consen 212 SSELLKEKGPTFSYSNANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSI 291 (587)
T ss_pred ccccccccCCccccccccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccch
Confidence 3444444444333 235589999999999999 99999999998886555443322222234455666677777777
Q ss_pred HhcccCccccCcHHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CccccCCCCCCCCCCC
Q 025024 80 RAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSS-PSEKTANGPTNGLANG 158 (259)
Q Consensus 80 ~~~~~~~~~~~p~~l~~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 158 (259)
-........+.|..++..+++.+..|..+.|||||||+..+++.+++................ ..+.............
T Consensus 292 ~~~~~~~~~i~p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~ 371 (587)
T KOG1864|consen 292 SSRKKLVGRISPTRFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKG 371 (587)
T ss_pred hhhcccccccCcchhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccc
Confidence 666666667999999999999999999999999999999999999987776543333211110 0111111122222222
Q ss_pred CCCCccccccccccceeeeeeeeeccCCCccccccCceEeeeecC--CCCCHHHHHhhccccceeCCCCccccccCCCcc
Q 025024 159 VRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIE--QNSSITSCLKNFSSTETLNAEDKFFCDKCCRLV 236 (259)
Q Consensus 159 ~~~~~~~s~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~--~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~ 236 (259)
.......++++++|.|++..+++|.+|++.+...+.|.+++++++ +..++..+|+.|..+|.+.|+++|+|++|...+
T Consensus 372 ~~~~~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~q 451 (587)
T KOG1864|consen 372 HHKSLRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQ 451 (587)
T ss_pred cccccchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchh
Confidence 455566788999999999999999999999999999999999999 679999999999999999999999999999999
Q ss_pred eeeeeeccccccccchheecc
Q 025024 237 IYTYICKSSVTDISCIVVVLH 257 (259)
Q Consensus 237 ~~~~~~~~~~~~~p~~l~i~h 257 (259)
++.+.+ ...-.|.++++|
T Consensus 452 eae~~l---~~k~lp~~L~l~ 469 (587)
T KOG1864|consen 452 EAERRL---KIKKLPYVLTLH 469 (587)
T ss_pred hHHHhc---cccCCcceeeee
Confidence 999833 333345555555
No 34
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.1e-20 Score=156.73 Aligned_cols=233 Identities=20% Similarity=0.263 Sum_probs=153.2
Q ss_pred CCCCCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcc-------------
Q 025024 17 PEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQK------------- 83 (259)
Q Consensus 17 ~~~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~------------- 83 (259)
|....++|+.|.||.|||||+||+|+.+++|.+.+...............+++.++..++.......
T Consensus 23 p~~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~ 102 (420)
T KOG1871|consen 23 PVPIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVP 102 (420)
T ss_pred ccccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCcc
Confidence 3346699999999999999999999999999997766543322333445667777777776665221
Q ss_pred -------------cCccccCcHHHHHHHHh--hccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CC----
Q 025024 84 -------------KKTGVIAPKRFVQRLKK--QNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESS-SP---- 143 (259)
Q Consensus 84 -------------~~~~~~~p~~l~~~~~~--~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~-~~---- 143 (259)
.+..++.|..+...+.. .......|+|+||.|||..+||.||+|+....+.....-.+ .+
T Consensus 103 ~~~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~i 182 (420)
T KOG1871|consen 103 EHVVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGLI 182 (420)
T ss_pred ccccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccccc
Confidence 11223444444443332 12233479999999999999999999998654433321111 00
Q ss_pred --------ccccCCCCCCCCCC-----------CCCCCccccccccccceeeeeeeeeccCCCccccccCceEeeeecC-
Q 025024 144 --------SEKTANGPTNGLAN-----------GVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIE- 203 (259)
Q Consensus 144 --------~~~~~~~~~~~~~~-----------~~~~~~~~s~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~- 203 (259)
......+.....+| ........++|.++|+|++++.+. .--.+++...+||..|.|+|.
T Consensus 183 ~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~-~~~nkeS~tlqPF~tlqldiq~ 261 (420)
T KOG1871|consen 183 NNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLY-QPSNKESATLQPFFTLQLDIQS 261 (420)
T ss_pred cccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhcccccccee-ccccccccccCccceeeeeeec
Confidence 01111111111111 122345567899999999999988 445567788999999999994
Q ss_pred -CCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchheecc
Q 025024 204 -QNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVVLH 257 (259)
Q Consensus 204 -~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i~h 257 (259)
.-.+++++++.+...|.+.+ |.-. -|....+.+ +.....+|+.|+ +|
T Consensus 262 ~~i~sv~~ales~~~re~lp~---~st~-s~~eV~~s~--q~~leklp~vli-lh 309 (420)
T KOG1871|consen 262 EKIHSVQDALESLVARESLPG---YSTK-SGQEVEASS--QTTLEKLPPVLI-LH 309 (420)
T ss_pred cccCCHHHHhhccChhhcccc---eecC-CCCeechhh--hhhHhhcchhhh-hh
Confidence 45799999999999999986 5433 445555555 566677766554 44
No 35
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.8e-21 Score=180.95 Aligned_cols=185 Identities=25% Similarity=0.327 Sum_probs=153.9
Q ss_pred CCCCCCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCC----CCCCcchhhHHHHHHHHHHHHHhcccCccccCc
Q 025024 16 FPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN----KNLGDAEENLLTCLADLFTQIRAQKKKTGVIAP 91 (259)
Q Consensus 16 ~~~~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~----~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p 91 (259)
.+.-++.+||.|.||||||||.+|+|.+.+.++.+++...... ..+.+..+.+..++..+...+|..... .+.|
T Consensus 240 ~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~--~v~~ 317 (842)
T KOG1870|consen 240 SPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGNKS--AVAP 317 (842)
T ss_pred CCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCCcc--ccCc
Confidence 3445789999999999999999999999999999998764432 245566678999999999999988543 6999
Q ss_pred HHHHHHHHhhccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccc
Q 025024 92 KRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKN 171 (259)
Q Consensus 92 ~~l~~~~~~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~l 171 (259)
..+...+....+.|.++.|+|.+||+.+++|.+|+.+.....++.....++... .........|.....++.++|+++
T Consensus 318 ~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~r--p~~~~~~~~~~~~~~~~~s~i~d~ 395 (842)
T KOG1870|consen 318 TSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLR--PDQEVAAEVWDYHLKRNRSVIVDL 395 (842)
T ss_pred hhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccc--hhhhhhHHHHHhhhhhccceeeee
Confidence 999999999999999999999999999999999999998777633222222111 222333455777888899999999
Q ss_pred cceeeeeeeeeccCCCccccccCceEeeeecCC
Q 025024 172 FQGILTNETRCLRCETVTARDETFFDLSLDIEQ 204 (259)
Q Consensus 172 F~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~ 204 (259)
|.|..++.+.|..|+.++.++++|..|+|++|.
T Consensus 396 ~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~ 428 (842)
T KOG1870|consen 396 FDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPG 428 (842)
T ss_pred ecceecccccCccCCCceEEeeccccccccCCC
Confidence 999999999999999999999999999999984
No 36
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.77 E-value=4e-18 Score=141.17 Aligned_cols=164 Identities=29% Similarity=0.406 Sum_probs=132.9
Q ss_pred CCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHH
Q 025024 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLK 99 (259)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~ 99 (259)
+|.+||.|+-++-|+|+++|+|.+.+++|++++... +.-+....++..|..+++++|.+..=.+-++|.++++++.
T Consensus 132 pG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~----n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSphe~lqaV~ 207 (442)
T KOG2026|consen 132 PGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEE----NYFDNLTELVQRLGELIRKLWNPRNFKGHVSPHEFLQAVM 207 (442)
T ss_pred eeeeccchhhhHHHHHHHHHHHhccchhhhhhcccc----cccchhHHHHHHHHHHHHHhcChhhhcccCCHHHHHHHHH
Confidence 569999999999999999999999999999987631 2456678899999999999999876555699999999975
Q ss_pred h-hccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeee
Q 025024 100 K-QNELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTN 178 (259)
Q Consensus 100 ~-~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~ 178 (259)
. ....|.-++|.|+-||+++||+.||..++... + ..|+|++-|+|.++.
T Consensus 208 ~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k-~-----------------------------~~SIi~~~fqG~~ri 257 (442)
T KOG2026|consen 208 KLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSK-K-----------------------------ASSIIHKSFQGEVRI 257 (442)
T ss_pred HHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCC-C-----------------------------chhHhhHhhcceEEe
Confidence 3 55689999999999999999999999887542 1 338999999999986
Q ss_pred eeeecc----CCCccccccCceEeeeecCCC--------------CCHHHHHhhccc
Q 025024 179 ETRCLR----CETVTARDETFFDLSLDIEQN--------------SSITSCLKNFSS 217 (259)
Q Consensus 179 ~i~C~~----C~~~s~~~e~f~~L~L~i~~~--------------~sL~~~L~~~~~ 217 (259)
..+=.. -........||+.|+|++|.. ..|-+.|..|-.
T Consensus 258 ~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g 314 (442)
T KOG2026|consen 258 VKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDG 314 (442)
T ss_pred eeeccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcC
Confidence 655333 112346678999999999864 467777777654
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.3e-14 Score=121.40 Aligned_cols=164 Identities=24% Similarity=0.253 Sum_probs=122.6
Q ss_pred ccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCC--cchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHH
Q 025024 22 YFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLG--DAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLK 99 (259)
Q Consensus 22 ~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~ 99 (259)
++|+.|.|||||||+.+|+|-.+|+++..+-.+........ .....++.+++.+|+.+... .++.|..+...++
T Consensus 105 p~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~----~~v~pi~llqtl~ 180 (473)
T KOG1872|consen 105 PVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK----GAVAPINLLQTLS 180 (473)
T ss_pred CccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc----CCcchHHHHHHHH
Confidence 67999999999999999999999999888766532211111 11356778889999999876 4699999999999
Q ss_pred hhccccCC------CCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccc
Q 025024 100 KQNELFRS------YMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQ 173 (259)
Q Consensus 100 ~~~~~f~~------~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~ 173 (259)
+..|+|.- +.||||.|+...++..++..+....... ...+.+.++|+
T Consensus 181 ~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~---------------------------~~~~~~d~~f~ 233 (473)
T KOG1872|consen 181 SQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP---------------------------CLEAEAAAGFG 233 (473)
T ss_pred HHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc---------------------------chhHHHHHhhc
Confidence 99998875 8899999999999998876554322211 23466899999
Q ss_pred eeeeeeeeeccCCCcccc--ccCceEeeeecCCC-CCHHHHHhhcc
Q 025024 174 GILTNETRCLRCETVTAR--DETFFDLSLDIEQN-SSITSCLKNFS 216 (259)
Q Consensus 174 g~~~~~i~C~~C~~~s~~--~e~f~~L~L~i~~~-~sL~~~L~~~~ 216 (259)
+.+..+.+|..=...... .|.|..|+..|... ..+...|..-+
T Consensus 234 ~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~ 279 (473)
T KOG1872|consen 234 AEFSTTMSCSEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLKSGL 279 (473)
T ss_pred cccccceeeccCcccccccccccccccceEEeeeechhhhhhhhhh
Confidence 999999999887765533 78888888888653 23444444433
No 38
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.31 E-value=2.8e-12 Score=116.73 Aligned_cols=209 Identities=19% Similarity=0.267 Sum_probs=135.8
Q ss_pred CCCCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHH
Q 025024 18 EGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQR 97 (259)
Q Consensus 18 ~~~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~ 97 (259)
..+.+.||.-.+-+-|.||+||+|+++|+++..++.+ .+..+.|++|+|..||.+|..+... +.....|.++
T Consensus 495 NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H------~C~~e~CL~CELGFLF~Ml~~S~G~--~Cqa~NFlra 566 (1118)
T KOG1275|consen 495 NQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH------ICTKEFCLLCELGFLFTMLDSSTGD--PCQANNFLRA 566 (1118)
T ss_pred ccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcC------ccchhHHHHHHHHHHHHHHhhhcCC--ccchhHHHHH
Confidence 4466899999999999999999999999999999984 5677899999999999999988544 7899999999
Q ss_pred HHhhccccCCCC---C-------------ChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCC
Q 025024 98 LKKQNELFRSYM---H-------------QDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRK 161 (259)
Q Consensus 98 ~~~~~~~f~~~~---Q-------------~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (259)
++.....-+.|. + |||..|.....+.. .++.+-..- ............
T Consensus 567 f~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~-~d~~~~~~~---------------~~s~~~~~~~~~ 630 (1118)
T KOG1275|consen 567 FRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRH-LDCQDCRGL---------------QQSESVDGESFK 630 (1118)
T ss_pred HhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhhhh-hhHHHhhhh---------------hhhhcccCceee
Confidence 986543222111 1 22222222111111 111110000 000011112222
Q ss_pred CccccccccccceeeeeeeeeccCCCccccccCceEeeeecCCC---------CCHHHHHhhccccceeCCCCccccccC
Q 025024 162 EPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQN---------SSITSCLKNFSSTETLNAEDKFFCDKC 232 (259)
Q Consensus 162 ~~~~s~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~~---------~sL~~~L~~~~~~e~l~~~~~~~C~~C 232 (259)
......+.+.|+..+....+|..|+..+.+......+.|..|.. ..+.+.|++-...++- .+-.|+.|
T Consensus 631 vn~~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn---~~~~C~~C 707 (1118)
T KOG1275|consen 631 VNYAPVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKN---KQAWCETC 707 (1118)
T ss_pred ecchhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhcccc---cccccccc
Confidence 33456799999999999999999999887777777777776642 2344455553332221 22689999
Q ss_pred CCcceeeeeeccccccccchhee
Q 025024 233 CRLVIYTYICKSSVTDISCIVVV 255 (259)
Q Consensus 233 ~~~~~~~~~~~~~~~~~p~~l~i 255 (259)
++.++..+ +..+..+|.+|.|
T Consensus 708 ~k~ep~~q--~~~vr~LPd~L~i 728 (1118)
T KOG1275|consen 708 TKPEPTSQ--KKNVRSLPDCLSI 728 (1118)
T ss_pred cCCCCccc--ccccccCcceeee
Confidence 99888876 3455555555543
No 39
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=98.95 E-value=8.7e-10 Score=89.70 Aligned_cols=91 Identities=21% Similarity=0.426 Sum_probs=67.6
Q ss_pred ccccccc-hhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhhc
Q 025024 24 GLENFGN-TCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQN 102 (259)
Q Consensus 24 GL~N~Gn-tCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~ 102 (259)
|..|.+| +||+-|+|=++++
T Consensus 1 g~~~~~~~~cy~d~~~~~~f~----------------------------------------------------------- 21 (241)
T cd02670 1 GAQNHCNVSCYLDALLFAMFA----------------------------------------------------------- 21 (241)
T ss_pred CCccccCceeehHHHHHHHHH-----------------------------------------------------------
Confidence 7899999 9999999999887
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCccccccccccceeeeeeeee
Q 025024 103 ELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRC 182 (259)
Q Consensus 103 ~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~~~~i~C 182 (259)
+|+|+.||+.+|+++|..-+. ++..++|.|-...+-.
T Consensus 22 ------~q~D~~e~~~~l~~~~~~~~~------------------------------------~~~~~~~~~g~~~~~~- 58 (241)
T cd02670 22 ------EQQDPEEFFNFITDKLLMPLL------------------------------------EPKVDIIHGGKKDQDD- 58 (241)
T ss_pred ------HhcCHHHHHHHHHHHHhhhhh------------------------------------hHHHHHHhcCcccccc-
Confidence 899999999999999864332 2245566663221111
Q ss_pred ccCCCccccccCceEeeeecCC---CCCHHHHHhhcccccee
Q 025024 183 LRCETVTARDETFFDLSLDIEQ---NSSITSCLKNFSSTETL 221 (259)
Q Consensus 183 ~~C~~~s~~~e~f~~L~L~i~~---~~sL~~~L~~~~~~e~l 221 (259)
+ +...|.+..|++|.+. ..+|++||+.|++.|.+
T Consensus 59 ----~-~~~~e~~l~l~ip~~~~~~~~tLedcLe~~~~~e~i 95 (241)
T cd02670 59 ----D-KLVNERLLQIPVPDDDDGGGITLEQCLEQYFNNSVF 95 (241)
T ss_pred ----c-cccccceEEeecccCCCCCcCCHHHHHHHHhchhhh
Confidence 1 4556777777777643 47999999999999973
No 40
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.5e-05 Score=72.70 Aligned_cols=105 Identities=28% Similarity=0.347 Sum_probs=62.1
Q ss_pred cccccchhHHHHHHHHhhCCHHHHHHHHHhhcCC---CCCCc----------chhhHHHHHHHHHHHHHhcccCccccCc
Q 025024 25 LENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN---KNLGD----------AEENLLTCLADLFTQIRAQKKKTGVIAP 91 (259)
Q Consensus 25 L~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~---~~~~~----------~~~~~~~~l~~l~~~l~~~~~~~~~~~p 91 (259)
|.|.||+||.||+||+|.++|+|+-.+...+... ....+ ...+...++-..+... .+....-...-
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 9999999999999999999999998887653321 01111 0111112222222222 11000111223
Q ss_pred HHHHHHHH---hhccccCCCCCChHHHHHHHHHHHHHHHHHH
Q 025024 92 KRFVQRLK---KQNELFRSYMHQDAHEFLNFLLNELVDILEK 130 (259)
Q Consensus 92 ~~l~~~~~---~~~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~ 130 (259)
..+..... +....|....|+||++++.-++-.+.+.+.-
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~~ 154 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMGV 154 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhccc
Confidence 33334332 3455688899999999999998887765543
No 41
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00034 Score=67.14 Aligned_cols=48 Identities=33% Similarity=0.636 Sum_probs=42.6
Q ss_pred CCHHHHHhhccccceeCCCCccccccCCCcceeeeeeccccccccchhee
Q 025024 206 SSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKSSVTDISCIVVV 255 (259)
Q Consensus 206 ~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~l~i 255 (259)
.+|++||+.|+.+|.+..+++|+|++|++.+.|++ +.-.+.+|++|+|
T Consensus 696 ~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~K--k~~lwrlPeiLii 743 (842)
T KOG1870|consen 696 NSLESCLELFSEPETLGKDDRWYCPQCKELRQATK--KLDLWRLPEILII 743 (842)
T ss_pred ccHHHHHHhhcchhcCCccccccChHHHHHHHHhh--hhhhhhCCceEEE
Confidence 69999999999999999999999999999999999 5666777776654
No 42
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=96.42 E-value=0.0014 Score=50.11 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=16.3
Q ss_pred hhhcCCCCCCCCccccccccchhHHHHHHHHhh
Q 025024 10 KALGDQFPEGERYFGLENFGNTCYCNSVLQALY 42 (259)
Q Consensus 10 ~~~~~~~~~~~~~~GL~N~GntCy~Ns~LQ~L~ 42 (259)
+++.++.+....+.|+.|.+|+||+||++|.+-
T Consensus 21 ~l~~~~~~~~~eft~~PN~~dnCWlNaL~QL~~ 53 (193)
T PF05408_consen 21 ALFLSRLDGKMEFTGLPNNHDNCWLNALLQLFR 53 (193)
T ss_dssp -----------EEE----SSSTHHHHHHHHHHH
T ss_pred heeeccCCcceEEecCCCCCCChHHHHHHHHHH
Confidence 444455555566889999999999999999864
No 43
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=96.29 E-value=0.0044 Score=50.06 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=25.3
Q ss_pred ccccchhHHHHHHHHhhCCHHHHHHHHH
Q 025024 26 ENFGNTCYCNSVLQALYFCVPFREQLLD 53 (259)
Q Consensus 26 ~N~GntCy~Ns~LQ~L~~~p~f~~~l~~ 53 (259)
+|.-|.||+-++|-+|.|+..+++.+-.
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~ 33 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTE 33 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 6889999999999999999999887654
No 44
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0047 Score=56.86 Aligned_cols=30 Identities=37% Similarity=0.909 Sum_probs=28.3
Q ss_pred CCCHHHHHhhccccceeCCCCccccccCCC
Q 025024 205 NSSITSCLKNFSSTETLNAEDKFFCDKCCR 234 (259)
Q Consensus 205 ~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~ 234 (259)
..++++||..|++.|.+.|+|+|.||.|-+
T Consensus 677 p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk 706 (877)
T KOG1873|consen 677 PCSVQRCLKNFTKVEILSGDNKWACENCTK 706 (877)
T ss_pred CccHHHHHHhhhhhhhcccccchhhhhhhc
Confidence 479999999999999999999999999966
No 45
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=87.50 E-value=1.2 Score=37.93 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=39.8
Q ss_pred CccccccccchhHHHHHHHHhhCCHH-HHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHHHHHHH
Q 025024 21 RYFGLENFGNTCYCNSVLQALYFCVP-FREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLK 99 (259)
Q Consensus 21 ~~~GL~N~GntCy~Ns~LQ~L~~~p~-f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~ 99 (259)
|+.=|.-.-|+||+||++-.|-++.. |+.. .+.+++.++..+ +|..|...+-
T Consensus 101 g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~--------------------~l~~aw~~f~~G-------~~~~fVa~~Y 153 (320)
T PF08715_consen 101 GFRVLKQSDNNCWVNAACLQLQALKIKFKSP--------------------GLDEAWNEFKAG-------DPAPFVAWCY 153 (320)
T ss_dssp TEEEE---TTTHHHHHHHHHHTTST--BSSH--------------------HHHHHHHHHHTT---------HHHHHHHH
T ss_pred CEEEEEecCCCcHHHHHHHHHHhcCCccCCH--------------------HHHHHHHHHhCC-------ChHHHHHHHH
Confidence 34455556799999999877766543 3321 223333333332 2445555444
Q ss_pred hhccccCCCCCChHHHHHHHHHHHHH
Q 025024 100 KQNELFRSYMHQDAHEFLNFLLNELV 125 (259)
Q Consensus 100 ~~~~~f~~~~Q~Da~Efl~~ll~~L~ 125 (259)
.. .....|+--||+++|..|++.++
T Consensus 154 a~-~~~~~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 154 AS-TNAKKGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp HH-TT--TTS---HHHHHHHHHTTB-
T ss_pred HH-cCCCCCCCcCHHHHHHHHHHhcc
Confidence 32 23456888999999999987553
No 46
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=74.31 E-value=4.9 Score=36.28 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.2
Q ss_pred CCccccccccchhHHHHHHHHhhCC
Q 025024 20 ERYFGLENFGNTCYCNSVLQALYFC 44 (259)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~ 44 (259)
..+.|++-.-|.||+||.|=+++.-
T Consensus 366 gk~kgiqgh~nscyldstlf~~f~f 390 (724)
T KOG3556|consen 366 GKIKGIQGHPNSCYLDSTLFKPFEF 390 (724)
T ss_pred cccccccCCcchhhccccccccccc
Confidence 4488999999999999998887743
No 47
>PF14353 CpXC: CpXC protein
Probab=73.17 E-value=3.5 Score=30.06 Aligned_cols=51 Identities=14% Similarity=0.317 Sum_probs=28.6
Q ss_pred eeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceee
Q 025024 179 ETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYT 239 (259)
Q Consensus 179 ~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~ 239 (259)
+++|..|++..... - --+++......+-+.| +..+-. .+.|+.||+.....
T Consensus 1 ~itCP~C~~~~~~~-v--~~~I~~~~~p~l~e~i---l~g~l~----~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 1 EITCPHCGHEFEFE-V--WTSINADEDPELKEKI---LDGSLF----SFTCPSCGHKFRLE 51 (128)
T ss_pred CcCCCCCCCeeEEE-E--EeEEcCcCCHHHHHHH---HcCCcC----EEECCCCCCceecC
Confidence 47899999765421 1 2333433333344443 223333 39999999877544
No 48
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=70.05 E-value=0.82 Score=39.51 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=98.2
Q ss_pred CccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhc----ccCcc-----ccCc
Q 025024 21 RYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQ----KKKTG-----VIAP 91 (259)
Q Consensus 21 ~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~----~~~~~-----~~~p 91 (259)
-++|+.|.||-|+.+|..|...+.-++...+-...... .+ ...+.....+.++|.....+ .++.. ++-|
T Consensus 177 t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~-i~-r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~t 254 (420)
T KOG1871|consen 177 TPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTD-IP-RADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFT 254 (420)
T ss_pred cccccccccccccccchhhcccccCchhhhcCCcccCc-cC-CCCCcccCcHHHhhccccccceeccccccccccCccce
Confidence 38999999999999999999999998877655432221 11 11111222333444433221 11111 1111
Q ss_pred ----------HHHHHHHH-----hh--------ccccCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccC
Q 025024 92 ----------KRFVQRLK-----KQ--------NELFRSYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTA 148 (259)
Q Consensus 92 ----------~~l~~~~~-----~~--------~~~f~~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~ 148 (259)
.....++. .. ........|.++++|...|+..|++++-...-.......+
T Consensus 255 lqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~------- 327 (420)
T KOG1871|consen 255 LQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKK------- 327 (420)
T ss_pred eeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchh-------
Confidence 11111111 11 1223356799999999999999999887642211110000
Q ss_pred CCCCCCCCCCC-CCC---ccccccccccceeeeeeeeeccCCCccccccCceEeeeecCCC--CCHHHHHhhccccceeC
Q 025024 149 NGPTNGLANGV-RKE---PLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQN--SSITSCLKNFSSTETLN 222 (259)
Q Consensus 149 ~~~~~~~~~~~-~~~---~~~s~i~~lF~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~~--~sL~~~L~~~~~~e~l~ 222 (259)
......|.. ... ...+-+ -+|++.++....-. =...+.+..++......+..+ ..++|++-.+...+.+.
T Consensus 328 --i~~~~~l~i~~~~~s~gvk~~~-~~~~~~yks~~vvy-htgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~ 403 (420)
T KOG1871|consen 328 --IEYPWTLKISKNCFSQGLKIRI-LIATRPYKSLAVVY-HTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVE 403 (420)
T ss_pred --hhccceeeechhhhccccchhh-hccccccceEEEEE-ecccccccCceEEeeeecccCceeEeccceeeeccHhhhc
Confidence 000000000 000 011112 45666665555422 123456677777777777543 46788877777777765
No 49
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=67.22 E-value=1.2 Score=40.43 Aligned_cols=105 Identities=15% Similarity=0.081 Sum_probs=57.3
Q ss_pred CCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCCCCCCcchhhHHHHHHHHHHHHHhcccCccccCcHHH--HHH
Q 025024 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRF--VQR 97 (259)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l--~~~ 97 (259)
....|+.+.+++|+||+.+|.++.++.|.-+............. ..++...+..+....+.............. +..
T Consensus 75 ~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~ 153 (492)
T KOG1867|consen 75 LEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYK-EQPFHQLDSTLLTHLAEATVCQQTLLKENPKDRLV 153 (492)
T ss_pred ccccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhh-ccchhhccchhhhhhhhhhccchhcccCCcccccc
Confidence 45899999999999999999999999876544322111000000 112222222222222222111111111111 122
Q ss_pred HHhhccccCCCCCChHHHHHHHHHHHHH
Q 025024 98 LKKQNELFRSYMHQDAHEFLNFLLNELV 125 (259)
Q Consensus 98 ~~~~~~~f~~~~Q~Da~Efl~~ll~~L~ 125 (259)
.......+.+..-.++.+|+..++..|.
T Consensus 154 ~~~~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 154 LSTTALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred cceeeecccccccccHHHHHHHHHHHhh
Confidence 2333445667788999999999999885
No 50
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=62.19 E-value=1.7 Score=41.22 Aligned_cols=139 Identities=14% Similarity=0.075 Sum_probs=75.1
Q ss_pred HHHHhhccccC---CCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCCCCCCCCCCCCCCCcccccccccc
Q 025024 96 QRLKKQNELFR---SYMHQDAHEFLNFLLNELVDILEKEEAAKSDPESSSPSEKTANGPTNGLANGVRKEPLVTWVHKNF 172 (259)
Q Consensus 96 ~~~~~~~~~f~---~~~Q~Da~Efl~~ll~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF 172 (259)
.++..+++.+. .-...++.++|..++..|+.+.............+.. ....|... ...++.+++|
T Consensus 532 ~al~~~~~~s~~~~~~~~~~~S~lL~~ll~~l~~~~~~ss~~~~v~~aile---------~~~~Wk~~--er~~l~~~lf 600 (806)
T KOG1887|consen 532 IALQNFFPASVSESIKHEGVYSELLSDLLLSLEEVHNASSSAADVVVAILE---------FWQCWKNP--ERESLVNRLF 600 (806)
T ss_pred chhhhcCCcchHHHHHhhhhHHHHHHHHHhhhHHHhhhcchhhHHHHHHHh---------cccccccH--HHHHHHHhhh
Confidence 33444444443 2234568889999999998777644111110000000 00011111 1236788899
Q ss_pred ceeeeeeeeeccCCCcccc---ccCceEeeeecC-------CCCCHHHHHhhccccceeCCCCccccc----cCCCccee
Q 025024 173 QGILTNETRCLRCETVTAR---DETFFDLSLDIE-------QNSSITSCLKNFSSTETLNAEDKFFCD----KCCRLVIY 238 (259)
Q Consensus 173 ~g~~~~~i~C~~C~~~s~~---~e~f~~L~L~i~-------~~~sL~~~L~~~~~~e~l~~~~~~~C~----~C~~~~~~ 238 (259)
+-....+..|.+|+..... .+.+.++.++.- +..+.++.|.. ...+.. ..|+ +||+..-.
T Consensus 601 ~l~~~e~~Sc~~cr~~~n~peqsS~~~~~~a~slr~~k~a~~n~~f~~ilk~-i~m~~~-----m~cD~~~gGCgk~n~v 674 (806)
T KOG1887|consen 601 TLEEKERMSCSKCRRDLNYPEQSSYGIVIAADSLRQLKCAFQNITFEDILKN-IRMNDK-----MLCDKETGGCGKANLV 674 (806)
T ss_pred hhhhhhhccccccccCCCCcchhhhhhhccchhhhhHHHHhhhhhHHHHHHH-hhhhhh-----hcccccCCCCcchhhh
Confidence 9999999999999976532 233333433321 23567777766 444444 5666 47766555
Q ss_pred eeeeccccccccchhee
Q 025024 239 TYICKSSVTDISCIVVV 255 (259)
Q Consensus 239 ~~~~~~~~~~~p~~l~i 255 (259)
.. .+...||+..|
T Consensus 675 ~h----~is~~P~vftI 687 (806)
T KOG1887|consen 675 HH----ILSPCPPVFTI 687 (806)
T ss_pred hh----hcCCCCCeeEe
Confidence 44 33335666555
No 51
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=61.13 E-value=4.4 Score=20.44 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.0
Q ss_pred CCCccccccCCCc
Q 025024 223 AEDKFFCDKCCRL 235 (259)
Q Consensus 223 ~~~~~~C~~C~~~ 235 (259)
|+..|.|+.|++.
T Consensus 11 ~~k~~~C~~C~k~ 23 (26)
T PF13465_consen 11 GEKPYKCPYCGKS 23 (26)
T ss_dssp SSSSEEESSSSEE
T ss_pred CCCCCCCCCCcCe
Confidence 4566999999853
No 52
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=53.59 E-value=8.4 Score=27.21 Aligned_cols=57 Identities=9% Similarity=0.203 Sum_probs=34.4
Q ss_pred eeeeccCCCccccccCceEeeeecCCCCCHHHHH----hhcccc----ceeCCCCccccccCCCcceeee
Q 025024 179 ETRCLRCETVTARDETFFDLSLDIEQNSSITSCL----KNFSST----ETLNAEDKFFCDKCCRLVIYTY 240 (259)
Q Consensus 179 ~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L----~~~~~~----e~l~~~~~~~C~~C~~~~~~~~ 240 (259)
.++| .|||.--.+...+-+...|-- ..-.+.+ ...+++ ..+.. |+|+.||+..+...
T Consensus 24 ~vkc-~CGh~f~d~r~NwK~~alv~v-Rd~~E~~~~iYp~~~aPdp~w~~irE---yyCP~Cgt~levE~ 88 (112)
T PF08882_consen 24 VVKC-DCGHEFCDARENWKLGALVYV-RDPEEIHPEIYPFTMAPDPEWQVIRE---YYCPGCGTQLEVEA 88 (112)
T ss_pred eeec-cCCCeecChhcChhhCcEEEe-cChHHhhhhhcccccCCCCCcEEEEE---EECCCCcceeEEcc
Confidence 6788 799988766666666665532 1122222 223332 23333 99999998776654
No 53
>PHA02998 RNA polymerase subunit; Provisional
Probab=46.03 E-value=18 Score=27.91 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=31.8
Q ss_pred ccccceeee-eeeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeee
Q 025024 169 HKNFQGILT-NETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTY 240 (259)
Q Consensus 169 ~~lF~g~~~-~~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~ 240 (259)
.+.|...-. ..++|..|++.... |+.++..-- +| +..+= |.|..||+.-...+
T Consensus 132 ~~yfnvlpkkt~v~CPkCg~~~A~---f~qlQTRSA-----DE-------PmT~F----YkC~~CG~~wkppk 185 (195)
T PHA02998 132 DDYFNVLDEKYNTPCPNCKSKNTT---PMMIQTRAA-----DE-------PPLVR----HACRDCKKHFKPPK 185 (195)
T ss_pred hhheeccCcccCCCCCCCCCCceE---EEEEeeccC-----CC-------CceEE----EEcCCCCCccCCcc
Confidence 557776666 78999999976653 344443311 11 22332 89999986554443
No 54
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=44.30 E-value=11 Score=18.77 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=7.6
Q ss_pred CccccccCCC
Q 025024 225 DKFFCDKCCR 234 (259)
Q Consensus 225 ~~~~C~~C~~ 234 (259)
..|.|++||.
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 3499999974
No 55
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=43.86 E-value=94 Score=23.59 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 025024 112 DAHEFLNFLLNELVDILEKEEA 133 (259)
Q Consensus 112 Da~Efl~~ll~~L~~e~~~~~~ 133 (259)
|..+....|...++...+....
T Consensus 78 ~~~~i~d~Ik~~~~~~~~~lk~ 99 (158)
T TIGR00373 78 NYEKALDVLKRKLEETAKKLRE 99 (158)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777665554433
No 56
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=43.37 E-value=19 Score=27.40 Aligned_cols=46 Identities=20% Similarity=0.409 Sum_probs=31.7
Q ss_pred eeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCC
Q 025024 179 ETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCR 234 (259)
Q Consensus 179 ~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~ 234 (259)
+..|.+|+..-. |....+. +|. ..|-..++.|.+.|.. -.|.+||+
T Consensus 114 ~wyc~~c~~~~~--e~~f~~~-d~~--~~~~~~~~~f~~~~~~-----rtC~~Cg~ 159 (159)
T TIGR03037 114 QWFCPQCGHKLH--RAEVQLE-NIV--TDLPPVFEHFYSNEDA-----RTCKNCGH 159 (159)
T ss_pred EEECCCCCCeEE--EEEEEec-Chh--hhhHHHHHHHhCChhh-----ccCCccCC
Confidence 466888875433 3323332 343 4599999999999988 69999984
No 57
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=41.90 E-value=20 Score=27.84 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=35.4
Q ss_pred eeeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceee
Q 025024 178 NETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYT 239 (259)
Q Consensus 178 ~~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~ 239 (259)
-+..|.+|+..-. +....+ -+|. ..|-..++.|.+.|.. -.|.+||+.....
T Consensus 119 ~~wyc~~c~~~~~--e~~f~~-~d~~--~~~~~~~~~f~~~~e~-----rtC~~CG~v~~~~ 170 (177)
T PRK13264 119 FQWYCDECNHKVH--EVEVQL-TDIE--TDLPPVFAAFYASEEL-----RTCDNCGTVHPGK 170 (177)
T ss_pred eEEECCCCCCeEE--EEEEEe-cChh--hhhHHHHHHHhcCHhh-----ccCCcCCcccCcc
Confidence 4467888876433 222222 2333 4589999999999998 6999999866554
No 58
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=40.06 E-value=20 Score=22.64 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=17.0
Q ss_pred CccccccCCCcceeeeeeccccccccchh
Q 025024 225 DKFFCDKCCRLVIYTYICKSSVTDISCIV 253 (259)
Q Consensus 225 ~~~~C~~C~~~~~~~~~~~~~~~~~p~~l 253 (259)
+.++|++||...-..+.+..+--.+..++
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskif 31 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIF 31 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeE
Confidence 34679999876655555555444444443
No 59
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=39.00 E-value=16 Score=18.40 Aligned_cols=11 Identities=36% Similarity=1.225 Sum_probs=7.9
Q ss_pred ccccccCCCcc
Q 025024 226 KFFCDKCCRLV 236 (259)
Q Consensus 226 ~~~C~~C~~~~ 236 (259)
+|+|+-|++.-
T Consensus 1 q~~C~~C~k~f 11 (27)
T PF12171_consen 1 QFYCDACDKYF 11 (27)
T ss_dssp -CBBTTTTBBB
T ss_pred CCCcccCCCCc
Confidence 48999998543
No 60
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=37.84 E-value=25 Score=25.94 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=27.4
Q ss_pred eeeeeeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcc
Q 025024 175 ILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLV 236 (259)
Q Consensus 175 ~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~ 236 (259)
...-..+|..||+.....+.-..| + ..+... -.+.+|.... -+.|+.||...
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~----~--~~~~~~--~~~~~~~~~~--~~~CP~Cgs~~ 117 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSLKEVKESL----D--EEIREA--IHFIPEVVHA--FLKCPKCGSRD 117 (135)
T ss_pred ecceEEECCCCCCEEecccccccc----c--cccccc--cccccccccc--CcCCcCCCCCC
Confidence 455678999999765432211111 1 122222 2344554432 26799999653
No 61
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=36.80 E-value=64 Score=22.30 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=37.8
Q ss_pred ceeeeeeeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCcceeeeeecc
Q 025024 173 QGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRLVIYTYICKS 244 (259)
Q Consensus 173 ~g~~~~~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~~~~~~ 244 (259)
.|....+..|..|.+..........=.. +....+++.|..=-+-+.++ ...-.|++|+.....=..++.
T Consensus 15 ~g~~~~rf~C~tCpY~~~I~~ei~~r~~--~~~Kevd~vlgg~~a~~nv~-~t~~~Cp~Cgh~rayF~qlQt 83 (105)
T KOG2906|consen 15 SGESCNRFSCRTCPYVFPISREISSRKY--PKLKEVDDVLGGDEAWENVD-QTEATCPTCGHERAYFMQLQT 83 (105)
T ss_pred cCCeEeeEEcCCCCceeeEeeeeecccc--CchhhhhhhcCCcccccchh-hccCcCCCCCCCceEEEEeee
Confidence 4455788899999987643221111111 12245777776533333332 123789999987765544443
No 62
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=34.56 E-value=14 Score=17.46 Aligned_cols=10 Identities=20% Similarity=0.690 Sum_probs=7.3
Q ss_pred cccccCCCcc
Q 025024 227 FFCDKCCRLV 236 (259)
Q Consensus 227 ~~C~~C~~~~ 236 (259)
|.|+.|++.-
T Consensus 1 y~C~~C~~~f 10 (23)
T PF00096_consen 1 YKCPICGKSF 10 (23)
T ss_dssp EEETTTTEEE
T ss_pred CCCCCCCCcc
Confidence 6799997643
No 63
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=32.97 E-value=1.5e+02 Score=25.97 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=50.3
Q ss_pred CCccccccccchhHHHHHHHHhhCCHHHHHHHHHhhcCC-CCCCc-chhhHHHHHHHHHHHHHhcccCccccCcHHHHHH
Q 025024 20 ERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNN-KNLGD-AEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQR 97 (259)
Q Consensus 20 ~~~~GL~N~GntCy~Ns~LQ~L~~~p~f~~~l~~~~~~~-~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~ 97 (259)
..++|++- +--+.|.|-.+|+|+..+-+-..+. ..... ........++.+|..++....+. --..+.+.
T Consensus 138 e~LcGFrp------~~eI~~~l~~~pe~~~LvGeEa~~q~~~~~~~e~e~~~~~l~~~Fs~lM~~~~~~---i~~~v~~L 208 (411)
T KOG2757|consen 138 EALCGFRP------LEEIKQFLDTIPELRELVGEEAARQLKDLTSHEDEDSKKVLKLCFSRLMKAEENV---IKIQVSKL 208 (411)
T ss_pred hhhhCccC------HHHHHHHHHhChHHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHHHHhcCchhH---HHHHHHHH
Confidence 34677775 3568899999999999876421110 01111 22456677888999999875442 12222222
Q ss_pred HHhhccccCCCCCChHHHHHHHH
Q 025024 98 LKKQNELFRSYMHQDAHEFLNFL 120 (259)
Q Consensus 98 ~~~~~~~f~~~~Q~Da~Efl~~l 120 (259)
.++....-+++...|..|.+..|
T Consensus 209 ~~r~~~~~~~~~~~d~~eli~~l 231 (411)
T KOG2757|consen 209 VKRLQNELNGFNLTDLEELILKL 231 (411)
T ss_pred HHHHhccccccCcccHHHHHHHH
Confidence 23333333444445555444333
No 64
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=32.04 E-value=2e+02 Score=22.32 Aligned_cols=10 Identities=30% Similarity=1.019 Sum_probs=8.2
Q ss_pred cccccCCCcc
Q 025024 227 FFCDKCCRLV 236 (259)
Q Consensus 227 ~~C~~C~~~~ 236 (259)
|.|+.||..-
T Consensus 137 F~Cp~Cg~~L 146 (178)
T PRK06266 137 FRCPQCGEML 146 (178)
T ss_pred CcCCCCCCCC
Confidence 9999998643
No 65
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=31.26 E-value=35 Score=21.65 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=10.5
Q ss_pred cccccCCCcceeeeeec
Q 025024 227 FFCDKCCRLVIYTYICK 243 (259)
Q Consensus 227 ~~C~~C~~~~~~~~~~~ 243 (259)
|.|++|+...-....++
T Consensus 1 y~C~KCg~~~~e~~~v~ 17 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVR 17 (64)
T ss_pred CCCCCCCCcceecceEE
Confidence 67999986554443333
No 66
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.59 E-value=48 Score=17.67 Aligned_cols=10 Identities=20% Similarity=0.590 Sum_probs=7.6
Q ss_pred cccccCCCcc
Q 025024 227 FFCDKCCRLV 236 (259)
Q Consensus 227 ~~C~~C~~~~ 236 (259)
+.|+.|+...
T Consensus 18 ~~CP~Cg~~~ 27 (33)
T cd00350 18 WVCPVCGAPK 27 (33)
T ss_pred CcCcCCCCcH
Confidence 8999997543
No 67
>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.33 E-value=31 Score=20.96 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=9.6
Q ss_pred eeeeeeccCCCc
Q 025024 177 TNETRCLRCETV 188 (259)
Q Consensus 177 ~~~i~C~~C~~~ 188 (259)
--+++|.+|++.
T Consensus 32 DIkikC~nC~h~ 43 (60)
T COG4481 32 DIKIKCENCGHS 43 (60)
T ss_pred cEEEEecCCCcE
Confidence 346899999985
No 68
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=29.79 E-value=23 Score=28.47 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=24.5
Q ss_pred CHHHHHhhccccceeC-CCCccccccCCCcceeee
Q 025024 207 SITSCLKNFSSTETLN-AEDKFFCDKCCRLVIYTY 240 (259)
Q Consensus 207 sL~~~L~~~~~~e~l~-~~~~~~C~~C~~~~~~~~ 240 (259)
+.++.++.|+...... ++++|.|.-|+|+=.+..
T Consensus 57 ~~e~eve~~v~~~~~e~~~~K~~C~lc~KlFkg~e 91 (214)
T PF04959_consen 57 DPEEEVEKFVQKNTKEEDEDKWRCPLCGKLFKGPE 91 (214)
T ss_dssp HHHHHHGGGEEEEE-SSSSEEEEE-SSS-EESSHH
T ss_pred cHHHHHHHHHHHHHHHHcCCEECCCCCCcccCChH
Confidence 5788899998877654 678999999997766654
No 69
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=29.72 E-value=31 Score=24.71 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=12.8
Q ss_pred hhccccceeCCCCccccccCCCcc
Q 025024 213 KNFSSTETLNAEDKFFCDKCCRLV 236 (259)
Q Consensus 213 ~~~~~~e~l~~~~~~~C~~C~~~~ 236 (259)
...+..+..+ |.|++|+...
T Consensus 77 ~~~~~~e~~~----~~CP~C~s~~ 96 (115)
T COG0375 77 GQEVELEELD----YRCPKCGSIN 96 (115)
T ss_pred CCeecchhhe----eECCCCCCCc
Confidence 3344455565 7799998554
No 70
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=29.15 E-value=38 Score=29.36 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=17.8
Q ss_pred CCCccccccccchhHHHHHHH
Q 025024 19 GERYFGLENFGNTCYCNSVLQ 39 (259)
Q Consensus 19 ~~~~~GL~N~GntCy~Ns~LQ 39 (259)
..|.+||-|.|-+-++|++=-
T Consensus 22 kiGIVGlPNvGKST~fnalT~ 42 (391)
T KOG1491|consen 22 KIGIVGLPNVGKSTFFNALTK 42 (391)
T ss_pred eeeEeeCCCCchHHHHHHHhc
Confidence 477999999999999997643
No 71
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=28.25 E-value=1e+02 Score=19.09 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcccCccccCcHHHHHHHHhhccccCCCCCChHHHHH
Q 025024 71 CLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFL 117 (259)
Q Consensus 71 ~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~~~f~~~~Q~Da~Efl 117 (259)
.+..+...++......+......+...+.....-+ |--++|++|||
T Consensus 18 ~lf~l~~~~N~~~~~~~~~~~~~~~~~l~~~~~vL-Gl~~~~~~~~l 63 (63)
T PF09190_consen 18 ALFELVKEINRALESNDKEDLEALAAALRKLLDVL-GLLQEDPEEWL 63 (63)
T ss_dssp HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHCC-T-S-S-HHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcC-cCCCCCHHHhC
Confidence 34444444444211222233344445555544333 44788888886
No 72
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=27.68 E-value=35 Score=21.72 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=12.4
Q ss_pred eeeeeccCCCcccccc
Q 025024 178 NETRCLRCETVTARDE 193 (259)
Q Consensus 178 ~~i~C~~C~~~s~~~e 193 (259)
-.++|.+|+++...++
T Consensus 18 l~VkCpdC~N~q~vFs 33 (67)
T COG2051 18 LRVKCPDCGNEQVVFS 33 (67)
T ss_pred EEEECCCCCCEEEEec
Confidence 3589999999886543
No 73
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=27.65 E-value=1.9e+02 Score=19.26 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHhcccCccccCcHHHHHHHHhhccccCCCCCChHHHHHHHHH
Q 025024 66 ENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLL 121 (259)
Q Consensus 66 ~~~~~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~~~~~~f~~~~Q~Da~Efl~~ll 121 (259)
.++...++..+..|+... .++.-..++..+.+.++....-.++..+.-|..|+
T Consensus 10 iPL~EvlC~~I~dln~~~---~~at~E~l~~~L~~~yp~i~~Ps~e~l~~~L~~Li 62 (80)
T PF10264_consen 10 IPLPEVLCWVISDLNAAG---QPATQETLREHLRKHYPGIAIPSQEVLYNTLGTLI 62 (80)
T ss_pred eeHHHHHHHHHHHHhccC---CcchHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 456777777888888764 35889999999999888776655555554444443
No 74
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=26.23 E-value=44 Score=20.35 Aligned_cols=11 Identities=27% Similarity=0.845 Sum_probs=6.9
Q ss_pred ccccccCCCcc
Q 025024 226 KFFCDKCCRLV 236 (259)
Q Consensus 226 ~~~C~~C~~~~ 236 (259)
.++|++|++.+
T Consensus 28 PlyCpKCK~Et 38 (55)
T PF14205_consen 28 PLYCPKCKQET 38 (55)
T ss_pred cccCCCCCceE
Confidence 36777776544
No 75
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=25.89 E-value=39 Score=18.72 Aligned_cols=13 Identities=23% Similarity=0.738 Sum_probs=7.8
Q ss_pred cccccCCCcceee
Q 025024 227 FFCDKCCRLVIYT 239 (259)
Q Consensus 227 ~~C~~C~~~~~~~ 239 (259)
|+|+.||......
T Consensus 7 YkC~~CGniVev~ 19 (36)
T PF06397_consen 7 YKCEHCGNIVEVV 19 (36)
T ss_dssp EE-TTT--EEEEE
T ss_pred EEccCCCCEEEEE
Confidence 9999999876544
No 76
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.55 E-value=1.1e+02 Score=22.40 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=41.8
Q ss_pred ccccceee--eeeeeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCC-----CccccccCCCcceee
Q 025024 169 HKNFQGIL--TNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAE-----DKFFCDKCCRLVIYT 239 (259)
Q Consensus 169 ~~lF~g~~--~~~i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~-----~~~~C~~C~~~~~~~ 239 (259)
.++|-.+- ...++|. ||+.---++..+-|..+|-- .+-++.|++..-.-.+.+. -.|.|+.||..-+..
T Consensus 58 ~hlfi~qs~~~rv~rce-cghsf~d~r~nwkl~a~i~v-rdtee~lreiyp~s~ipdp~wme~reficpecg~l~eve 133 (165)
T COG4647 58 DHLFICQSAQKRVIRCE-CGHSFGDYRENWKLHANIYV-RDTEEKLREIYPKSDIPDPQWMEIREFICPECGILHEVE 133 (165)
T ss_pred CcEEEEecccccEEEEe-ccccccChhhCceeeeEEEE-cchHHHHHHhCcccCCCCchHHHHHHhhCccccceeeec
Confidence 34554332 2357775 99998888888998888742 2345556554322222221 138999999765544
No 77
>PHA02768 hypothetical protein; Provisional
Probab=24.37 E-value=33 Score=21.05 Aligned_cols=9 Identities=22% Similarity=0.837 Sum_probs=6.7
Q ss_pred cccccCCCc
Q 025024 227 FFCDKCCRL 235 (259)
Q Consensus 227 ~~C~~C~~~ 235 (259)
|.|+.||+.
T Consensus 6 y~C~~CGK~ 14 (55)
T PHA02768 6 YECPICGEI 14 (55)
T ss_pred cCcchhCCe
Confidence 788888764
No 78
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=24.31 E-value=2.3e+02 Score=18.98 Aligned_cols=30 Identities=10% Similarity=0.284 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhcccCccccCcHHHHHHHH
Q 025024 70 TCLADLFTQIRAQKKKTGVIAPKRFVQRLK 99 (259)
Q Consensus 70 ~~l~~l~~~l~~~~~~~~~~~p~~l~~~~~ 99 (259)
..+-.+|+++.......+.++..+|+..+.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~ 39 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQ 39 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHH
Confidence 334455555555333233566666666664
No 79
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=24.26 E-value=61 Score=23.16 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=11.6
Q ss_pred eeeeeeeeeccCCCccc
Q 025024 174 GILTNETRCLRCETVTA 190 (259)
Q Consensus 174 g~~~~~i~C~~C~~~s~ 190 (259)
-...-+.+|..|++...
T Consensus 65 ~~~p~~~~C~~Cg~~~~ 81 (115)
T TIGR00100 65 EDEPVECECEDCSEEVS 81 (115)
T ss_pred EeeCcEEEcccCCCEEe
Confidence 34456689999996543
No 80
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=23.84 E-value=34 Score=15.84 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=6.2
Q ss_pred cccccCCCcce
Q 025024 227 FFCDKCCRLVI 237 (259)
Q Consensus 227 ~~C~~C~~~~~ 237 (259)
|.|+.|++.-.
T Consensus 1 ~~C~~C~~~~~ 11 (24)
T PF13894_consen 1 FQCPICGKSFR 11 (24)
T ss_dssp EE-SSTS-EES
T ss_pred CCCcCCCCcCC
Confidence 57999976543
No 81
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=22.42 E-value=41 Score=20.94 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=25.4
Q ss_pred eeeccCCCccccccCceEeeeecCCCCCHHHHHhhccccceeCCCCccccccCCCc
Q 025024 180 TRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCRL 235 (259)
Q Consensus 180 i~C~~C~~~s~~~e~f~~L~L~i~~~~sL~~~L~~~~~~e~l~~~~~~~C~~C~~~ 235 (259)
-.|.+|+..-.-.|.+....-|-=++..+..+-.- .++ .+.|.|++||-.
T Consensus 10 ~~CtSCg~~i~p~e~~v~F~CPnCGe~~I~Rc~~C----Rk~--g~~Y~Cp~CGF~ 59 (61)
T COG2888 10 PVCTSCGREIAPGETAVKFPCPNCGEVEIYRCAKC----RKL--GNPYRCPKCGFE 59 (61)
T ss_pred ceeccCCCEeccCCceeEeeCCCCCceeeehhhhH----HHc--CCceECCCcCcc
Confidence 46788876654444444444443232333333221 122 245999999843
No 82
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=22.05 E-value=43 Score=16.35 Aligned_cols=12 Identities=17% Similarity=0.567 Sum_probs=8.4
Q ss_pred ccccCCCcceee
Q 025024 228 FCDKCCRLVIYT 239 (259)
Q Consensus 228 ~C~~C~~~~~~~ 239 (259)
+|.+||+.....
T Consensus 1 ~Cp~CG~~~~~~ 12 (23)
T PF13240_consen 1 YCPNCGAEIEDD 12 (23)
T ss_pred CCcccCCCCCCc
Confidence 588888766544
No 83
>KOG2907 consensus RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12 [Transcription]
Probab=21.92 E-value=45 Score=23.70 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=10.4
Q ss_pred eeeccCCCcccccc
Q 025024 180 TRCLRCETVTARDE 193 (259)
Q Consensus 180 i~C~~C~~~s~~~e 193 (259)
.+|..|||..-.|.
T Consensus 75 ~kCpkCghe~m~Y~ 88 (116)
T KOG2907|consen 75 HKCPKCGHEEMSYH 88 (116)
T ss_pred ccCcccCCchhhhh
Confidence 58999998765443
No 84
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=21.76 E-value=71 Score=22.72 Aligned_cols=17 Identities=18% Similarity=0.394 Sum_probs=11.8
Q ss_pred eeeeeeeeeccCCCccc
Q 025024 174 GILTNETRCLRCETVTA 190 (259)
Q Consensus 174 g~~~~~i~C~~C~~~s~ 190 (259)
-.+.-+.+|..|++...
T Consensus 65 ~~vp~~~~C~~Cg~~~~ 81 (113)
T PRK12380 65 VYKPAQAWCWDCSQVVE 81 (113)
T ss_pred EeeCcEEEcccCCCEEe
Confidence 34556789999996543
No 85
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=21.13 E-value=55 Score=20.38 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=12.0
Q ss_pred eeeeeccCCCcccccc
Q 025024 178 NETRCLRCETVTARDE 193 (259)
Q Consensus 178 ~~i~C~~C~~~s~~~e 193 (259)
-.++|.+|+++.+.|+
T Consensus 10 ~~VkCp~C~n~q~vFs 25 (59)
T PRK00415 10 LKVKCPDCGNEQVVFS 25 (59)
T ss_pred EEEECCCCCCeEEEEe
Confidence 3589999998876543
No 86
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=20.17 E-value=24 Score=18.82 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=11.4
Q ss_pred cccccccchhHHHHH
Q 025024 23 FGLENFGNTCYCNSV 37 (259)
Q Consensus 23 ~GL~N~GntCy~Ns~ 37 (259)
.=+.|.+|.|+-|=+
T Consensus 18 ilidnfsnfc~ynfi 32 (37)
T PF08199_consen 18 ILIDNFSNFCHYNFI 32 (37)
T ss_pred Hhhhccccceeeeee
Confidence 346799999998843
No 87
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=20.11 E-value=2.3e+02 Score=18.92 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhcccCcc-ccCcHHHHHHHHh
Q 025024 69 LTCLADLFTQIRAQKKKTG-VIAPKRFVQRLKK 100 (259)
Q Consensus 69 ~~~l~~l~~~l~~~~~~~~-~~~p~~l~~~~~~ 100 (259)
+..+.+.|+.+.... ..+ .++...|...++.
T Consensus 7 ~~~l~~aF~~fD~~d-gdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 7 MVALIDVFHQYSGRE-GDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHHHhcccC-CCcCEECHHHHHHHHHH
Confidence 344556666664211 122 3667777766665
Done!