BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025025
         (259 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
           Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 32/239 (13%)

Query: 31  GPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEL 88
           G W +A AT+YG  + +G    GGACG  N+    Y   TA  +  +F +G  CG+C+E+
Sbjct: 17  GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76

Query: 89  KCGGDPQWCNPGNPA-ILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ-- 145
           +C   P+ C+ GNP  + IT  N+ P     P            HFDL+   F  LA+  
Sbjct: 77  RCKEKPE-CS-GNPVTVYITDMNYEP---IAPY-----------HFDLSGKAFGSLAKPG 120

Query: 146 -----YRAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVSVK 196
                   GI+ V +RRV C+   G +   +  +  N     VLV  VA  GDIV + ++
Sbjct: 121 LNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQ 180

Query: 197 GA-NTQWLSMSRNWGQNWQSN-AQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFS 253
              + +W  M  +WG  W+ + A+ +    S R+T    +   + +V PANW+    ++
Sbjct: 181 DKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYT 239


>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
           Allergen
          Length = 241

 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 36/244 (14%)

Query: 30  GGPWQSAHATFYGGSDASGTM--GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFE 87
           G  W  A +T+YG    +G    GGACGY ++    +   T   +T +F +G  CG+CFE
Sbjct: 16  GDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFE 75

Query: 88  LKCGGDPQWCNPGNPAIL-ITATNFCPPNFAQPSDNGGWCNPPRP-HFDLAMPMFLKLAQ 145
           +KC   P+ C+ G P ++ IT  N                 P  P HFDL+   F  +A+
Sbjct: 76  IKC-TKPEACS-GEPVVVHITDDNE---------------EPIAPYHFDLSGHAFGAMAK 118

Query: 146 Y-------RAGIVPVSYRRVPCRKRGGIRFTINGFRYFN----LVLVTNVAGAGDIVRVS 194
                    AG + + +RRV C+   G + T +  +  N     +LV  V G GD+V V 
Sbjct: 119 KGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVD 178

Query: 195 VK-GANTQWLSMSRNWGQNWQSNA--QLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQT 251
           +K     +W+ +  +WG  W+ +   +L G   + R T      + + +V P  W+   +
Sbjct: 179 IKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTS 237

Query: 252 FSGK 255
           +  K
Sbjct: 238 YESK 241


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,678,330
Number of Sequences: 62578
Number of extensions: 376016
Number of successful extensions: 624
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 4
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)