Query 025025
Match_columns 259
No_of_seqs 138 out of 995
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 09:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 9.8E-69 2.1E-73 480.9 28.5 231 26-257 23-256 (256)
2 PLN00050 expansin A; Provision 100.0 8.8E-69 1.9E-73 479.4 26.4 233 22-257 15-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 1.5E-61 3.2E-66 432.6 26.3 209 30-257 22-246 (247)
4 COG4305 Endoglucanase C-termin 100.0 2.4E-26 5.2E-31 194.2 20.8 194 31-258 28-231 (232)
5 PLN03024 Putative EG45-like do 99.9 1.6E-26 3.5E-31 188.1 14.1 118 5-157 4-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 1.2E-26 2.5E-31 178.1 8.7 87 68-155 1-87 (87)
7 PLN00115 pollen allergen group 99.9 4.1E-23 8.8E-28 166.3 11.1 87 165-257 25-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 3.3E-22 7.2E-27 151.7 9.6 77 166-243 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 5.5E-19 1.2E-23 132.2 6.2 75 68-155 1-78 (78)
10 PF00967 Barwin: Barwin family 99.0 6E-10 1.3E-14 88.8 4.2 60 78-160 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.1 2.3E-05 5.1E-10 63.5 8.8 66 67-159 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 98.0 6.6E-05 1.4E-09 66.1 11.0 97 36-164 1-97 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.8 0.00015 3.3E-09 64.8 10.1 61 81-161 118-178 (233)
14 PRK10672 rare lipoprotein A; P 97.4 0.0017 3.7E-08 61.7 11.3 91 35-159 80-172 (361)
15 PF02015 Glyco_hydro_45: Glyco 93.3 0.082 1.8E-06 46.5 3.4 54 68-138 70-123 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 70.8 8.3 0.00018 31.5 4.7 49 186-234 38-105 (131)
17 PRK10564 maltose regulon perip 68.3 16 0.00035 34.3 6.5 77 153-258 48-128 (303)
18 cd02110 SO_family_Moco_dimer S 68.1 11 0.00024 35.3 5.5 49 187-235 235-293 (317)
19 cd02854 Glycogen_branching_enz 66.3 16 0.00034 28.4 5.2 48 190-237 16-76 (99)
20 PRK13701 psiB plasmid SOS inhi 49.4 46 0.00099 27.8 5.3 60 135-196 32-105 (144)
21 TIGR02588 conserved hypothetic 49.2 1.5E+02 0.0032 24.3 8.4 66 164-230 34-118 (122)
22 cd02855 Glycogen_branching_enz 39.1 1.1E+02 0.0025 22.7 6.0 34 203-236 49-85 (106)
23 PLN00177 sulfite oxidase; Prov 38.8 76 0.0017 30.8 6.0 27 181-207 289-316 (393)
24 PF10417 1-cysPrx_C: C-termina 37.1 19 0.00042 23.4 1.1 11 240-250 10-20 (40)
25 PF03100 CcmE: CcmE; InterPro 32.0 52 0.0011 26.7 3.1 29 223-251 72-101 (131)
26 PF06290 PsiB: Plasmid SOS inh 31.8 1.1E+02 0.0023 25.8 4.9 23 173-197 84-106 (143)
27 cd02113 bact_SoxC_Moco bacteri 31.1 95 0.0021 29.4 5.2 49 186-234 236-293 (326)
28 KOG4192 Uncharacterized conser 30.8 1.8E+02 0.004 23.9 6.0 79 125-207 36-124 (134)
29 cd02114 bact_SorA_Moco sulfite 29.6 87 0.0019 30.1 4.7 49 186-234 286-344 (367)
30 cd02111 eukary_SO_Moco molybdo 28.2 1.8E+02 0.0039 27.9 6.6 55 181-235 269-339 (365)
31 PRK13159 cytochrome c-type bio 28.0 71 0.0015 27.2 3.4 28 223-250 73-101 (155)
32 PRK13254 cytochrome c-type bio 25.2 88 0.0019 26.3 3.4 29 223-251 72-101 (148)
33 cd02861 E_set_proteins_like E 24.4 1.3E+02 0.0029 21.8 4.0 44 191-236 14-60 (82)
34 PRK13150 cytochrome c-type bio 23.1 94 0.002 26.5 3.2 29 223-251 79-108 (159)
35 cd02112 eukary_NR_Moco molybdo 21.9 2.5E+02 0.0055 27.1 6.3 47 188-234 300-363 (386)
36 cd02859 AMPKbeta_GBD_like AMP- 21.5 3.3E+02 0.0071 19.8 6.5 55 179-239 4-62 (79)
37 PF10206 WRW: Mitochondrial F1 20.5 44 0.00096 26.6 0.7 22 18-46 8-29 (104)
38 PRK10301 hypothetical protein; 20.3 1.6E+02 0.0034 23.8 3.9 27 145-171 95-124 (124)
39 PRK13165 cytochrome c-type bio 20.0 1.2E+02 0.0026 25.9 3.2 29 223-251 79-108 (160)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=9.8e-69 Score=480.93 Aligned_cols=231 Identities=65% Similarity=1.219 Sum_probs=216.9
Q ss_pred CccCCCCeeEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcC--CCCCCCCCCCc
Q 025025 26 GVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGG--DPQWCNPGNPA 103 (259)
Q Consensus 26 ~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~y~~g~~CG~C~eV~c~~--~p~~C~~g~~s 103 (259)
|.+..++|++|+|||||++++.|+++|||||+++...+++.++||+|+++|++|++||+||||+|.. +|..|.++ ++
T Consensus 23 ~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g-~s 101 (256)
T PLN00193 23 NAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKG-AS 101 (256)
T ss_pred cCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCC-Ce
Confidence 4455578999999999999998999999999998888899999999999999999999999999952 45689876 59
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhccccCCeEEEEEEEeecccCCceEEEEcCcCcEEEEEEEe
Q 025025 104 ILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLVTN 183 (259)
Q Consensus 104 v~V~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v~ss~yw~~v~v~n 183 (259)
|+|+|||.||++|..|.+|++||++++.|||||..||.+||.+..|+++|+||||+|+++|||+|++++++||++|+|.|
T Consensus 102 V~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv~n 181 (256)
T PLN00193 102 VTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLISN 181 (256)
T ss_pred EEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEEEE
Confidence 99999999999998899999999988999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcceeEEEEEecCcceeEcccCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCCCCcEEecC-ce
Q 025025 184 VAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGK-NF 257 (259)
Q Consensus 184 ~~g~~~I~sVei~~~g~~w~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~v~a~~viP~~w~~G~~y~~~-qf 257 (259)
++|+++|++|+||+++++|++|+|+||++|+++.+|.++||+||||+.+|+++++.||||++|++|++|++. ||
T Consensus 182 v~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 182 VGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred eCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence 999999999999998778999999999999999878777999999999999999999999999999999996 97
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=8.8e-69 Score=479.42 Aligned_cols=233 Identities=73% Similarity=1.309 Sum_probs=219.7
Q ss_pred cccCCccCCCCeeEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCCCCCCCC
Q 025025 22 AKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGN 101 (259)
Q Consensus 22 ~~~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~p~~C~~g~ 101 (259)
-||+..+. .+|..++|||||++++.|+++|||||+++..++++.++||+|+++|++|++||+||||+|.+++..|.++
T Consensus 15 ~~~~~~~~-~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~g- 92 (247)
T PLN00050 15 LKIVEGYG-SGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPG- 92 (247)
T ss_pred heeccccC-CCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCC-
Confidence 47777775 6899999999999999999999999999888889999999999999999999999999998766679876
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhccccCCeEEEEEEEeecccCCceEEEEcCcCcEEEEEE
Q 025025 102 PAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTINGFRYFNLVLV 181 (259)
Q Consensus 102 ~sv~V~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v~ss~yw~~v~v 181 (259)
+|+|+|||.||+++..|..|++||++++.|||||..||.+||....|+|+|+||||+|+++|||+|++++++||++|+|
T Consensus 93 -sV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv 171 (247)
T PLN00050 93 -SIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLI 171 (247)
T ss_pred -cEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEE
Confidence 8999999999998888888999999889999999999999999999999999999999999999999998889999999
Q ss_pred EeecCCcceeEEEEEecCcceeEcccCCCceEEeCCCCCCcceEEEEEecCCcEEEEccccCCCCCCCcEEecCce
Q 025025 182 TNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSWNVAPANWQFGQTFSGKNF 257 (259)
Q Consensus 182 ~n~~g~~~I~sVei~~~g~~w~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~v~a~~viP~~w~~G~~y~~~qf 257 (259)
.|++|+++|++|+|++++++|++|+|+||++|+++.++.+.||+||||+.+|+++++.||||++|++|++|+++||
T Consensus 172 ~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~~f 247 (247)
T PLN00050 172 TNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247 (247)
T ss_pred EEcCCCccEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecCcC
Confidence 9999999999999999877899999999999999887777799999999999999999999999999999999988
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=1.5e-61 Score=432.55 Aligned_cols=209 Identities=29% Similarity=0.642 Sum_probs=188.9
Q ss_pred CCCeeEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCCCCCCCCCcEEEEEe
Q 025025 30 GGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITAT 109 (259)
Q Consensus 30 ~~~~~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~Vt 109 (259)
.++|++++|||||++++.|+++|||||+++..+.++.++||++ ++|++|++||+||||+|.+ |..|.++ +|+|+||
T Consensus 22 ~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-~~~C~~~--~v~V~iT 97 (247)
T PLN03023 22 SQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-PNLCSDD--GVNVVVT 97 (247)
T ss_pred cCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-CCccCCC--CeEEEEE
Confidence 3569999999999999999999999999987777888899998 9999999999999999976 5689876 8999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhccc-------cCCeEEEEEEEeecccCC-ceEEEEc--Cc-CcEEE
Q 025025 110 NFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQY-------RAGIVPVSYRRVPCRKRG-GIRFTIN--GF-RYFNL 178 (259)
Q Consensus 110 D~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~~-------~~G~v~i~~r~V~C~~~g-ni~~~v~--ss-~yw~~ 178 (259)
|.||. ++.|||||..||.+||.+ ..|+|+|+||||+|.++| ||+|+|+ ++ ++|++
T Consensus 98 d~~~~--------------~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~ 163 (247)
T PLN03023 98 DYGEG--------------DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLA 163 (247)
T ss_pred eCCCC--------------CCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEE
Confidence 99985 368999999999999984 669999999999999999 9999998 43 88999
Q ss_pred EEEEeecCCcceeEEEEEecC-cceeEcccCCCceEEeCCCCCCcceEEEEE--ecCCcE-EEEccccCCCCCCCcEEec
Q 025025 179 VLVTNVAGAGDIVRVSVKGAN-TQWLSMSRNWGQNWQSNAQLVGQALSFRVT--GSDRRT-STSWNVAPANWQFGQTFSG 254 (259)
Q Consensus 179 v~v~n~~g~~~I~sVei~~~g-~~w~~m~r~~gn~W~~~~~~~g~p~~vRvT--s~~G~~-v~a~~viP~~w~~G~~y~~ 254 (259)
|+|.|++|+++|++||||+++ .+|++|+|+||++|+++.+|+| ||+||++ ..+|++ |++.||||++|++|++|++
T Consensus 164 vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s 242 (247)
T PLN03023 164 IVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDS 242 (247)
T ss_pred EEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEec
Confidence 999999999999999999965 6899999999999999989998 6666664 457755 8999999999999999999
Q ss_pred C-ce
Q 025025 255 K-NF 257 (259)
Q Consensus 255 ~-qf 257 (259)
+ ||
T Consensus 243 ~vq~ 246 (247)
T PLN03023 243 NIQL 246 (247)
T ss_pred cccc
Confidence 7 98
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.4e-26 Score=194.25 Aligned_cols=194 Identities=20% Similarity=0.346 Sum_probs=160.6
Q ss_pred CCeeEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCC----CCCCceEEEEEcCCCCCCCCCCCcEEE
Q 025025 31 GPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNG----LSCGACFELKCGGDPQWCNPGNPAILI 106 (259)
Q Consensus 31 ~~~~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~y~~g----~~CG~C~eV~c~~~p~~C~~g~~sv~V 106 (259)
.+-++|.|||-+.. .++||=-.. +.+.+..|.|+|+++-+-| +.-|+.++|.+ |+ | ..+|
T Consensus 28 d~~f~G~ATyTgsG----YsGGAflLD---PI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG---PK----G--~TTV 91 (232)
T COG4305 28 DDLFEGYATYTGSG----YSGGAFLLD---PIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG---PK----G--KTTV 91 (232)
T ss_pred ccccceeEEEeccc----ccCceEEec---CcCCcceeeecCHHHcccCCchhhhccceEEEEC---CC----C--ceEE
Confidence 45678999998853 357776543 3345566999999887754 68999999998 43 5 6889
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhccccCCeEEEEEEEeecccCCceEEEEc--CcCcEEEEEEEee
Q 025025 107 TATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRGGIRFTIN--GFRYFNLVLVTNV 184 (259)
Q Consensus 107 ~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v~--ss~yw~~v~v~n~ 184 (259)
.|||..|++ ..+.||||+.||.+|.++.+|+|+|+||.|+-|..||+.+++| |+.||.++||+|+
T Consensus 92 YVTDlYPeg-------------asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH 158 (232)
T COG4305 92 YVTDLYPEG-------------ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNH 158 (232)
T ss_pred EEecccccc-------------cccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeecc
Confidence 999999984 4678999999999999999999999999999999999999999 7899999999999
Q ss_pred cCCcceeEEEEEecCcceeEcccCCCceEEeCCCCCCcceEEEEEecCCcEEEEc-cccCCCCCCCcEEe--cC-cee
Q 025025 185 AGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTGSDRRTSTSW-NVAPANWQFGQTFS--GK-NFR 258 (259)
Q Consensus 185 ~g~~~I~sVei~~~g~~w~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~v~a~-~viP~~w~~G~~y~--~~-qf~ 258 (259)
. .||.++|+.+. +.|..|...+||+|.-.+.-.+ |+.+|+||+.|+.++.. -.+|..-.. +-|+ ++ ||+
T Consensus 159 ~--yPV~KlE~~qd-g~WinlpK~dYNhFVgT~LG~~-pL~~RmTDIRG~~l~DtlP~Lpk~asS-KaY~V~G~VQFs 231 (232)
T COG4305 159 K--YPVMKLEYEQD-GKWINLPKMDYNHFVGTNLGTG-PLKVRMTDIRGKVLKDTLPKLPKSASS-KAYTVPGHVQFS 231 (232)
T ss_pred c--CceEEEEEecC-CeEeeccccccceeeccccCCC-ceEEEEeecccceeecccccccccccC-CceeecceeecC
Confidence 8 79999999975 6899999999999987663334 99999999999999865 456654443 3455 44 886
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.94 E-value=1.6e-26 Score=188.11 Aligned_cols=118 Identities=35% Similarity=0.664 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHHhhhcccCCccCCCCeeEEEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCc
Q 025025 5 RMLCFFSVALSLFATANAKIPGVFAGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGA 84 (259)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~y~~g~~CG~ 84 (259)
|+|.+.++.+.||..+ .-..|+||||++++ .||| |++ .+++.++||+++.+|++|+.||+
T Consensus 4 ~~~~~~~~~~~~~~~~-----------~~~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~ 63 (125)
T PLN03024 4 RILIFSTVLVFLFSVS-----------YATPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGK 63 (125)
T ss_pred eeHHHHHHHHHHhhhh-----------cccceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCc
Confidence 6777777766666443 23459999999654 4899 444 24678999999999999999999
Q ss_pred eEEEEEcCC----CCCCCCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhccccCCeEEEEEEE
Q 025025 85 CFELKCGGD----PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 157 (259)
Q Consensus 85 C~eV~c~~~----p~~C~~g~~sv~V~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~~~~G~v~i~~r~ 157 (259)
||||+|.+. +..|+. ++|+|+|+|+||+. |. .|||||++||++||+++.|+++|+|.+
T Consensus 64 c~~V~C~~~~~~~~~~c~g--ksV~V~VtD~CP~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 64 MFTVKCKGPRNAVPHPCTG--KSVTVKIVDHCPSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred eEEEEECCCCccccccccC--CeEEEEEEcCCCCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 999999652 236864 49999999999962 73 599999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.94 E-value=1.2e-26 Score=178.05 Aligned_cols=87 Identities=71% Similarity=1.403 Sum_probs=80.7
Q ss_pred EEEechhccCCCCCCCceEEEEEcCCCCCCCCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhcccc
Q 025025 68 TAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYR 147 (259)
Q Consensus 68 ~aA~s~~~y~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~~~ 147 (259)
+||+|+++|++|++||+||||+|.++|..|.++ ++|+|+|||+||+++..|+.+++||.+++.|||||+.||.+||.+.
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~-~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~ 79 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPG-GSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYK 79 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCC-CeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhc
Confidence 489999999999999999999997667789876 5999999999999888888889999988999999999999999999
Q ss_pred CCeEEEEE
Q 025025 148 AGIVPVSY 155 (259)
Q Consensus 148 ~G~v~i~~ 155 (259)
.|+|+|+|
T Consensus 80 ~Gvi~v~y 87 (87)
T smart00837 80 AGIVPVKY 87 (87)
T ss_pred CCEEeeEC
Confidence 99999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.89 E-value=4.1e-23 Score=166.32 Aligned_cols=87 Identities=16% Similarity=0.302 Sum_probs=78.7
Q ss_pred ceEEEEc--CcCcEEEEEEEeecCCcceeEEEEEecC-ccee-EcccCCCceEEeCC--CCCCcceEEEEEecCCcEEEE
Q 025025 165 GIRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVKGAN-TQWL-SMSRNWGQNWQSNA--QLVGQALSFRVTGSDRRTSTS 238 (259)
Q Consensus 165 ni~~~v~--ss~yw~~v~v~n~~g~~~I~sVei~~~g-~~w~-~m~r~~gn~W~~~~--~~~g~p~~vRvTs~~G~~v~a 238 (259)
+|+|+|+ |+++||++++ | ++|.+|||++++ .+|+ +|+|+||++|++++ +|+| ||+||+|+.+|+++++
T Consensus 25 ~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va 98 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV 98 (118)
T ss_pred ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence 9999999 5799997765 3 469999999986 5899 99999999999864 7888 9999999999999999
Q ss_pred ccccCCCCCCCcEEecC-ce
Q 025025 239 WNVAPANWQFGQTFSGK-NF 257 (259)
Q Consensus 239 ~~viP~~w~~G~~y~~~-qf 257 (259)
+||||++|++|++|+++ ||
T Consensus 99 ~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 99 DDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CceECCCCCCCCEEeccccC
Confidence 99999999999999997 87
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.87 E-value=3.3e-22 Score=151.72 Aligned_cols=77 Identities=45% Similarity=0.789 Sum_probs=64.2
Q ss_pred eEEEEc--CcCcEEEEEEEeecCCcceeEEEEEecCc-ceeEcccCCCceEEeC-CCCCCcceEEEEEecC-CcEEEEcc
Q 025025 166 IRFTIN--GFRYFNLVLVTNVAGAGDIVRVSVKGANT-QWLSMSRNWGQNWQSN-AQLVGQALSFRVTGSD-RRTSTSWN 240 (259)
Q Consensus 166 i~~~v~--ss~yw~~v~v~n~~g~~~I~sVei~~~g~-~w~~m~r~~gn~W~~~-~~~~g~p~~vRvTs~~-G~~v~a~~ 240 (259)
|+|+|+ |++||++|+|.|++|+++|++|||+++++ +|++|+|+||++|+++ +++++ ||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 689998 57999999999999999999999998874 6999999999999998 56666 9999999977 99999999
Q ss_pred ccC
Q 025025 241 VAP 243 (259)
Q Consensus 241 viP 243 (259)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.77 E-value=5.5e-19 Score=132.17 Aligned_cols=75 Identities=37% Similarity=0.801 Sum_probs=61.2
Q ss_pred EEEechhccCCCCCCCceEEEEEcCC-CCC--CCCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhc
Q 025025 68 TAALSTALFNNGLSCGACFELKCGGD-PQW--CNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLA 144 (259)
Q Consensus 68 ~aA~s~~~y~~g~~CG~C~eV~c~~~-p~~--C~~g~~sv~V~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia 144 (259)
+||++..+|++|..||+||+++|... ... |..+.++|+|+|+|+||+ | +..|||||+.||++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~--~~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------C--PPNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------S--SSSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------C--cCCEEEeCHHHHHHhC
Confidence 58999999999999999999999321 122 765226999999999998 7 4689999999999999
Q ss_pred cccCCeEEEEE
Q 025025 145 QYRAGIVPVSY 155 (259)
Q Consensus 145 ~~~~G~v~i~~ 155 (259)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.96 E-value=6e-10 Score=88.78 Aligned_cols=60 Identities=23% Similarity=0.506 Sum_probs=44.4
Q ss_pred CCCCCCceEEEEEcCCCCCCCCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhcc----ccCCeEEE
Q 025025 78 NGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ----YRAGIVPV 153 (259)
Q Consensus 78 ~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~----~~~G~v~i 153 (259)
.-..||+|++||.+. .+++++|+|+|+|+. ++|||.+.+|.+|-. ...|.+.|
T Consensus 56 gq~~CGkClrVTNt~-------tga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V 112 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA-------TGAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIV 112 (119)
T ss_dssp SGGGTT-EEEEE-TT-------T--EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEE
T ss_pred CcccccceEEEEecC-------CCcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEE
Confidence 347899999999865 346999999999986 389999999999953 36799999
Q ss_pred EEEEeec
Q 025025 154 SYRRVPC 160 (259)
Q Consensus 154 ~~r~V~C 160 (259)
.|++|+|
T Consensus 113 ~y~fV~C 119 (119)
T PF00967_consen 113 DYEFVDC 119 (119)
T ss_dssp EEEEE--
T ss_pred EEEEEcC
Confidence 9999999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.08 E-value=2.3e-05 Score=63.48 Aligned_cols=66 Identities=21% Similarity=0.454 Sum_probs=46.6
Q ss_pred eEEEechh-ccCCCCCCCceEEEEEcCCCCCCCCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhcc
Q 025025 67 NTAALSTA-LFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQ 145 (259)
Q Consensus 67 ~~aA~s~~-~y~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~ 145 (259)
.|.+.... -| ++..||.|+|++-. + ++|.|..+|.=+ ..|+|+.+||+.|.+
T Consensus 44 ~IGg~~~V~gW-nS~~CGtC~~lty~--------g-~si~vlaID~a~-----------------~gfnis~~A~n~LT~ 96 (119)
T PF07249_consen 44 YIGGAPAVAGW-NSPNCGTCWKLTYN--------G-RSIYVLAIDHAG-----------------GGFNISLDAMNDLTN 96 (119)
T ss_dssp SEEEETT--ST-T-TTTT-EEEEEET--------T-EEEEEEEEEE-S-----------------SSEEE-HHHHHHHHT
T ss_pred eeccccccccC-CCCCCCCeEEEEEC--------C-eEEEEEEEecCC-----------------CcccchHHHHHHhcC
Confidence 35555553 46 45789999999982 3 699999999733 359999999999976
Q ss_pred ---ccCCeEEEEEEEee
Q 025025 146 ---YRAGIVPVSYRRVP 159 (259)
Q Consensus 146 ---~~~G~v~i~~r~V~ 159 (259)
...|+|+++|++|+
T Consensus 97 g~a~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 97 GQAVELGRVDATYTQVD 113 (119)
T ss_dssp S-CCCC-EEE-EEEEE-
T ss_pred CcccceeEEEEEEEEcC
Confidence 36699999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.01 E-value=6.6e-05 Score=66.09 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=69.4
Q ss_pred EEEEEeCCCCCCCCCccccCCCcCCCCCCCCeEEEechhccCCCCCCCceEEEEEcCCCCCCCCCCCcEEEEEecCCCCC
Q 025025 36 AHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPN 115 (259)
Q Consensus 36 g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~~~~aA~s~~~y~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~CP~~ 115 (259)
|.|+|||..-. | ...|.|=.. + ...|+||-.+ ...|...+|+... ++++|+|+|.|.+|-.
T Consensus 1 G~ASwYg~~f~-G-~~TAnGe~y-~---~~~~tAAHkt------LPlgT~V~VtNl~-------ngrsviVrVnDRGPf~ 61 (208)
T TIGR00413 1 GLASWYGPKFH-G-RKTANGEVY-N---MKALTAAHKT------LPFNTYVKVTNLH-------NNRSVIVRINDRGPFS 61 (208)
T ss_pred CEEeEeCCCCC-C-CcCCCCeec-C---CCcccccccc------CCCCCEEEEEECC-------CCCEEEEEEeCCCCCC
Confidence 68999995411 1 123333211 1 1224555433 3789999999875 3479999999999972
Q ss_pred CCCCCCCCCCCCCCCCceEechHHHHhhccccCCeEEEEEEEeecccCC
Q 025025 116 FAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPCRKRG 164 (259)
Q Consensus 116 ~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~~~~G~v~i~~r~V~C~~~g 164 (259)
+.--+|||..|+.+|.-...|+.+|+.+.+......
T Consensus 62 -------------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~~ 97 (208)
T TIGR00413 62 -------------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKNG 97 (208)
T ss_pred -------------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCCc
Confidence 235799999999999999999999999999877543
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=0.00015 Score=64.83 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=51.8
Q ss_pred CCCceEEEEEcCCCCCCCCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceEechHHHHhhccccCCeEEEEEEEeec
Q 025025 81 SCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVPC 160 (259)
Q Consensus 81 ~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~~~~G~v~i~~r~V~C 160 (259)
.=|.-.+|+..++ +++|+|+|.|++|- . ..-.+|||..|+++|+-.+.|+.+|+.+.+.+
T Consensus 118 P~~t~v~VtNl~N-------grsvvVRINDRGPf------------~-~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~ 177 (233)
T COG0797 118 PLPTYVRVTNLDN-------GRSVVVRINDRGPF------------V-SGRIIDLSKAAADKLGMIRSGVAKVRIEVLGV 177 (233)
T ss_pred CCCCEEEEEEccC-------CcEEEEEEeCCCCC------------C-CCcEeEcCHHHHHHhCCccCceEEEEEEEecc
Confidence 3466789998763 47999999999995 2 34589999999999999999999999999997
Q ss_pred c
Q 025025 161 R 161 (259)
Q Consensus 161 ~ 161 (259)
.
T Consensus 178 ~ 178 (233)
T COG0797 178 A 178 (233)
T ss_pred c
Confidence 6
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.41 E-value=0.0017 Score=61.65 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=63.2
Q ss_pred EEEEEEeCCCCCCCCCccccCCCcCCCCCCC--CeEEEechhccCCCCCCCceEEEEEcCCCCCCCCCCCcEEEEEecCC
Q 025025 35 SAHATFYGGSDASGTMGGACGYGNLYSQGYG--VNTAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFC 112 (259)
Q Consensus 35 ~g~aT~Yg~~~~~g~~~GaCGyg~~~~~~~~--~~~aA~s~~~y~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~C 112 (259)
.|.|+|||..-.+ ...|.| ..++ .++||-.+ .--|...+|+..++ +++|+|+|.|++
T Consensus 80 ~G~ASwYg~~f~G--~~TA~G------e~~~~~~~tAAH~t------LPlps~vrVtNl~n-------grsvvVrVnDRG 138 (361)
T PRK10672 80 AGLAAIYDAEAGS--NLTASG------ERFDPNALTAAHPT------LPIPSYVRVTNLAN-------GRMIVVRINDRG 138 (361)
T ss_pred EEEEEEeCCccCC--CcCcCc------eeecCCcCeeeccC------CCCCCEEEEEECCC-------CcEEEEEEeCCC
Confidence 7889999864210 012222 2232 23454433 36788999999763 479999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCceEechHHHHhhccccCCeEEEEEEEee
Q 025025 113 PPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRRVP 159 (259)
Q Consensus 113 P~~~~~~~~~~~~C~~~~~~fDLS~~AF~~ia~~~~G~v~i~~r~V~ 159 (259)
|-. +.--+|||..|+++|.-...+.+.|+.-.|.
T Consensus 139 P~~-------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~ 172 (361)
T PRK10672 139 PYG-------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVA 172 (361)
T ss_pred CCC-------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeC
Confidence 973 2357999999999998877788888887773
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=93.34 E-value=0.082 Score=46.52 Aligned_cols=54 Identities=31% Similarity=0.429 Sum_probs=31.6
Q ss_pred EEEechhccCCCCCCCceEEEEEcCCCCCCCCCCCcEEEEEecCCCCCCCCCCCCCCCCCCCCCceEechH
Q 025025 68 TAALSTALFNNGLSCGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMP 138 (259)
Q Consensus 68 ~aA~s~~~y~~g~~CG~C~eV~c~~~p~~C~~g~~sv~V~VtD~CP~~~~~~~~~~~~C~~~~~~fDLS~~ 138 (259)
+||.+-.-..+...|++|||++-++.+. .| |+.+|++++.=-. -..+||||.-.
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~l---~G-KkmiVQ~tNtG~d-------------lg~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGPL---KG-KKMIVQVTNTGGD-------------LGSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SSTT---TT--EEEEEEEEE-TT-------------TTTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCCc---CC-CEeEEEecccCCC-------------CCCCeEEEEeC
Confidence 5665522222336899999999987443 34 7999999985222 14689999764
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=70.85 E-value=8.3 Score=31.54 Aligned_cols=49 Identities=24% Similarity=0.458 Sum_probs=29.3
Q ss_pred CCc-ceeEEEEEecCc-ceeEcccCCCc-------------eEEeCC---CCCCc-ceEEEEEecCCc
Q 025025 186 GAG-DIVRVSVKGANT-QWLSMSRNWGQ-------------NWQSNA---QLVGQ-ALSFRVTGSDRR 234 (259)
Q Consensus 186 g~~-~I~sVei~~~g~-~w~~m~r~~gn-------------~W~~~~---~~~g~-p~~vRvTs~~G~ 234 (259)
|.+ +|.+|||...++ +|++.+...-. .|++.- .+.|. -+.+|-||.+|.
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~ 105 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGN 105 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-
T ss_pred CCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeecccc
Confidence 335 899999998865 69988754221 366532 12342 567777888884
No 17
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.34 E-value=16 Score=34.26 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=50.1
Q ss_pred EEEEEeecccCCceEEEEc-CcCcEEEEEEEeecCCcceeEEEEEecCcceeEcccCCCceEEeCCCCCCcceEEEEEe-
Q 025025 153 VSYRRVPCRKRGGIRFTIN-GFRYFNLVLVTNVAGAGDIVRVSVKGANTQWLSMSRNWGQNWQSNAQLVGQALSFRVTG- 230 (259)
Q Consensus 153 i~~r~V~C~~~gni~~~v~-ss~yw~~v~v~n~~g~~~I~sVei~~~g~~w~~m~r~~gn~W~~~~~~~g~p~~vRvTs- 230 (259)
+.|..|. .+..+.|.+. +++.+ ...++.++|...+|-.. .| +++|+|+|
T Consensus 48 l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan---------------------~G-~l~i~LsS~ 98 (303)
T PRK10564 48 LTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPAN---------------------IG-ELTLTLSSL 98 (303)
T ss_pred CCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEcccc---------------------cc-cEEEEEEEE
Confidence 5677665 4467778877 56655 12334456665555432 23 78999998
Q ss_pred cCCcEEEEccccC--CCCCCCcEEecCcee
Q 025025 231 SDRRTSTSWNVAP--ANWQFGQTFSGKNFR 258 (259)
Q Consensus 231 ~~G~~v~a~~viP--~~w~~G~~y~~~qf~ 258 (259)
..++.|-+.+|+- ++|++-++|.+.+|.
T Consensus 99 v~~~~VfaPnVlvLD~~~~~~~~y~s~~F~ 128 (303)
T PRK10564 99 VNDKSVFAPNVLVLDQNMRPAAFYPSSYFT 128 (303)
T ss_pred ecCCcEEeceEEEEcCCCCEEEEecccceE
Confidence 4445788777544 888888888887765
No 18
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=68.11 E-value=11 Score=35.26 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=32.9
Q ss_pred CcceeEEEEEecCc-ceeEcccCCCc-------eEEeCC-CCCCc-ceEEEEEecCCcE
Q 025025 187 AGDIVRVSVKGANT-QWLSMSRNWGQ-------NWQSNA-QLVGQ-ALSFRVTGSDRRT 235 (259)
Q Consensus 187 ~~~I~sVei~~~g~-~w~~m~r~~gn-------~W~~~~-~~~g~-p~~vRvTs~~G~~ 235 (259)
...|++|||...++ +|++..-.... .|++.- +..|. -+.+|.+|.+|.+
T Consensus 235 ~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 235 GRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 35799999998876 89998764321 455542 22342 6777778888853
No 19
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=66.30 E-value=16 Score=28.35 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=34.6
Q ss_pred eeEEEEEecCccee----EcccCCCceEEeC--CC-------CCCcceEEEEEecCCcEEE
Q 025025 190 IVRVSVKGANTQWL----SMSRNWGQNWQSN--AQ-------LVGQALSFRVTGSDRRTST 237 (259)
Q Consensus 190 I~sVei~~~g~~w~----~m~r~~gn~W~~~--~~-------~~g~p~~vRvTs~~G~~v~ 237 (259)
-++|+|.++-..|. +|+|...-+|++. .. ..+..+.++|+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 56778876545675 4888777799864 21 2566999999998888764
No 20
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=49.36 E-value=46 Score=27.83 Aligned_cols=60 Identities=22% Similarity=0.239 Sum_probs=30.3
Q ss_pred echHHHHhhccccCCeEEEEEE-------Eeeccc---CCceEEEEcC----cCcEEEEEEEeecCCcceeEEEEE
Q 025025 135 LAMPMFLKLAQYRAGIVPVSYR-------RVPCRK---RGGIRFTING----FRYFNLVLVTNVAGAGDIVRVSVK 196 (259)
Q Consensus 135 LS~~AF~~ia~~~~G~v~i~~r-------~V~C~~---~gni~~~v~s----s~yw~~v~v~n~~g~~~I~sVei~ 196 (259)
|+......|+-+..-+++-||| +|-|.+ .++..+.+=| +|+|+.|++ +.+| .++.-|...
T Consensus 32 Lt~aVm~~L~~P~gW~~naEy~sEFgGffPVq~Rfsp~~~~~~l~vCSpG~~sP~W~~Vl~-~~gG-~~~a~v~~~ 105 (144)
T PRK13701 32 LTHAVMRELDAPDGWTMNGEYGSEFGGFFPVQVRFTPAHERFHLALCSPGDVSPVWVLVLV-NAGG-EPFAVVQVQ 105 (144)
T ss_pred hHHHHHhccCCCccceeehhhhccccCeeeEEEEecCCCCCeEEEEeCCCCCCcceEEEEE-cCCC-cEEEEEEec
Confidence 3344444444444444444443 233333 1244444432 899998877 4555 355444443
No 21
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=49.22 E-value=1.5e+02 Score=24.31 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=40.6
Q ss_pred CceEEEEc------CcCcEEEEEEEeecCCcceeEEEEEec----C-------cceeEcccCCC--ceEEeCCCCCCcce
Q 025025 164 GGIRFTIN------GFRYFNLVLVTNVAGAGDIVRVSVKGA----N-------TQWLSMSRNWG--QNWQSNAQLVGQAL 224 (259)
Q Consensus 164 gni~~~v~------ss~yw~~v~v~n~~g~~~I~sVei~~~----g-------~~w~~m~r~~g--n~W~~~~~~~g~p~ 224 (259)
..+.+.++ .-+||.-+.|.|.+| ...++|+|.+. + .+.-.+.+..- ..+-....|...-+
T Consensus 34 p~l~v~~~~~~r~~~gqyyVpF~V~N~gg-~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~g~L 112 (122)
T TIGR02588 34 AVLEVAPAEVERMQTGQYYVPFAIHNLGG-TTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRNGQL 112 (122)
T ss_pred CeEEEeehheeEEeCCEEEEEEEEEeCCC-cEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCcccCeE
Confidence 35666665 246999999999877 68999999864 1 12333333222 23444444443367
Q ss_pred EEEEEe
Q 025025 225 SFRVTG 230 (259)
Q Consensus 225 ~vRvTs 230 (259)
.||+.+
T Consensus 113 ~irv~g 118 (122)
T TIGR02588 113 RLRVAG 118 (122)
T ss_pred EEEEEe
Confidence 888765
No 22
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=39.14 E-value=1.1e+02 Score=22.74 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=21.1
Q ss_pred eEcccCC-CceEEe--CCCCCCcceEEEEEecCCcEE
Q 025025 203 LSMSRNW-GQNWQS--NAQLVGQALSFRVTGSDRRTS 236 (259)
Q Consensus 203 ~~m~r~~-gn~W~~--~~~~~g~p~~vRvTs~~G~~v 236 (259)
.+|.|.. ...|.. +....+..+.+|++..+|.+.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 4787765 667874 333333468999987555544
No 23
>PLN00177 sulfite oxidase; Provisional
Probab=38.80 E-value=76 Score=30.80 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=19.2
Q ss_pred EEeecCCcceeEEEEEecCc-ceeEccc
Q 025025 181 VTNVAGAGDIVRVSVKGANT-QWLSMSR 207 (259)
Q Consensus 181 v~n~~g~~~I~sVei~~~g~-~w~~m~r 207 (259)
+...+|...|++|||...++ +|+..+.
T Consensus 289 ~Awsggg~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 289 YALSGGGRGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred EEECCCCccEEEEEEEcCCCCCceeeee
Confidence 33444434799999998875 8997754
No 24
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=37.10 E-value=19 Score=23.39 Aligned_cols=11 Identities=45% Similarity=0.960 Sum_probs=9.4
Q ss_pred cccCCCCCCCc
Q 025025 240 NVAPANWQFGQ 250 (259)
Q Consensus 240 ~viP~~w~~G~ 250 (259)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 47899999986
No 25
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=31.99 E-value=52 Score=26.75 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=17.9
Q ss_pred ceEEEEEecCCc-EEEEccccCCCCCCCcE
Q 025025 223 ALSFRVTGSDRR-TSTSWNVAPANWQFGQT 251 (259)
Q Consensus 223 p~~vRvTs~~G~-~v~a~~viP~~w~~G~~ 251 (259)
.++|.|||...+ .|++..+.|++|+.|..
T Consensus 72 ~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 72 TLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp EEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred EEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 688999987543 66678999999998864
No 26
>PF06290 PsiB: Plasmid SOS inhibition protein (PsiB); InterPro: IPR009385 This family consists of several plasmid SOS inhibition protein (PsiB) sequences [].; PDB: 3NCT_B.
Probab=31.80 E-value=1.1e+02 Score=25.77 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=14.1
Q ss_pred cCcEEEEEEEeecCCcceeEEEEEe
Q 025025 173 FRYFNLVLVTNVAGAGDIVRVSVKG 197 (259)
Q Consensus 173 s~yw~~v~v~n~~g~~~I~sVei~~ 197 (259)
+|+|+.|++. .+| .++.-|....
T Consensus 84 sp~W~~vl~~-~~G-~~~~vv~t~~ 106 (143)
T PF06290_consen 84 SPYWMLVLVN-RGG-QPFAVVRTQD 106 (143)
T ss_dssp -SSEEEEEEE-CCC--SEEEEEEES
T ss_pred CcceEEEEEC-CCC-cEEEEEEecC
Confidence 8999977774 444 4666666553
No 27
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=31.07 E-value=95 Score=29.36 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=30.4
Q ss_pred CCcceeEEEEEecCc-ceeEcccCCC---c---eEEeC-CCCCC-cceEEEEEecCCc
Q 025025 186 GAGDIVRVSVKGANT-QWLSMSRNWG---Q---NWQSN-AQLVG-QALSFRVTGSDRR 234 (259)
Q Consensus 186 g~~~I~sVei~~~g~-~w~~m~r~~g---n---~W~~~-~~~~g-~p~~vRvTs~~G~ 234 (259)
|.++|++|||...++ +|+..+...- . .|.+. .+..+ --+-.|-||..|+
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~ 293 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGY 293 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCC
Confidence 345799999998875 7998876321 1 23332 12233 1566777888774
No 28
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.83 E-value=1.8e+02 Score=23.88 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=52.4
Q ss_pred CCC-CCCCceEechHHHHhhccccCCeEEEEEE-------EeecccCCceEEEEc-CcCcEEEEEEEeecCCcceeEEEE
Q 025025 125 WCN-PPRPHFDLAMPMFLKLAQYRAGIVPVSYR-------RVPCRKRGGIRFTIN-GFRYFNLVLVTNVAGAGDIVRVSV 195 (259)
Q Consensus 125 ~C~-~~~~~fDLS~~AF~~ia~~~~G~v~i~~r-------~V~C~~~gni~~~v~-ss~yw~~v~v~n~~g~~~I~sVei 195 (259)
.|. ...-||.+....|..|-+ -....+|+ -+.|..-|--+|... |++|=.+|.+.=..+ +.+++|++
T Consensus 36 ics~k~~~hfivpas~f~ll~g---~efitty~~gth~aqhtfck~cGV~sf~~~rs~p~~~~i~phCld~-gTlr~v~~ 111 (134)
T KOG4192|consen 36 ICSKKQNRHFIVPASRFVLLVG---AEFITTYTFGTHQAQHTFCKRCGVQSFYSPRSNPYGKGIAPHCLDE-GTLRSVVW 111 (134)
T ss_pred hhhhccceEEEEeccceEEEeC---cceEEEEEeccchhheeeeccccceeccccccCCCceeecceeecC-CceeEEEE
Confidence 364 235689998888877643 12334444 356766655567766 899999888765554 78999999
Q ss_pred EecC-cceeEccc
Q 025025 196 KGAN-TQWLSMSR 207 (259)
Q Consensus 196 ~~~g-~~w~~m~r 207 (259)
+.-+ .+|..+..
T Consensus 112 ~~fnGqdwe~~~e 124 (134)
T KOG4192|consen 112 EEFNGQDWEATME 124 (134)
T ss_pred EEecCcchhHhhh
Confidence 8765 46765543
No 29
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=29.56 E-value=87 Score=30.07 Aligned_cols=49 Identities=27% Similarity=0.523 Sum_probs=31.4
Q ss_pred CCcceeEEEEEecCc-ceeEcccC--CCc----eEEeCC-CC-CCc-ceEEEEEecCCc
Q 025025 186 GAGDIVRVSVKGANT-QWLSMSRN--WGQ----NWQSNA-QL-VGQ-ALSFRVTGSDRR 234 (259)
Q Consensus 186 g~~~I~sVei~~~g~-~w~~m~r~--~gn----~W~~~~-~~-~g~-p~~vRvTs~~G~ 234 (259)
|...|++|||...++ +|++.+-. .+. .|++.= +. .|. -+.+|-||..|.
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~ 344 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQ 344 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCC
Confidence 336899999998875 79987643 222 355541 22 342 566777888884
No 30
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=28.23 E-value=1.8e+02 Score=27.91 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=33.3
Q ss_pred EEeecCCcceeEEEEEecCc-ceeEcccCC--C-------c---eEEeCC-CCC-Cc-ceEEEEEecCCcE
Q 025025 181 VTNVAGAGDIVRVSVKGANT-QWLSMSRNW--G-------Q---NWQSNA-QLV-GQ-ALSFRVTGSDRRT 235 (259)
Q Consensus 181 v~n~~g~~~I~sVei~~~g~-~w~~m~r~~--g-------n---~W~~~~-~~~-g~-p~~vRvTs~~G~~ 235 (259)
+...+|...|++|||...++ +|+...... + - .|.+.- ..+ +. -+.+|-||..|++
T Consensus 269 ~A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~ 339 (365)
T cd02111 269 YAWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNV 339 (365)
T ss_pred EEECCCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCc
Confidence 33444445799999998875 799886532 1 1 344432 122 21 5667778888754
No 31
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=27.97 E-value=71 Score=27.15 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=21.2
Q ss_pred ceEEEEEecCCc-EEEEccccCCCCCCCc
Q 025025 223 ALSFRVTGSDRR-TSTSWNVAPANWQFGQ 250 (259)
Q Consensus 223 p~~vRvTs~~G~-~v~a~~viP~~w~~G~ 250 (259)
.++|+|||...+ .|.+..++|+-|+.|+
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 478888876543 5666789999998876
No 32
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=25.22 E-value=88 Score=26.26 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=21.1
Q ss_pred ceEEEEEecCCc-EEEEccccCCCCCCCcE
Q 025025 223 ALSFRVTGSDRR-TSTSWNVAPANWQFGQT 251 (259)
Q Consensus 223 p~~vRvTs~~G~-~v~a~~viP~~w~~G~~ 251 (259)
.++|+|||...+ .|++..++|++|+.|..
T Consensus 72 ~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~~ 101 (148)
T PRK13254 72 TVRFVVTDGNATVPVVYTGILPDLFREGQG 101 (148)
T ss_pred EEEEEEEeCCeEEEEEECCCCCccccCCCE
Confidence 578888886433 55567899999888763
No 33
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=24.44 E-value=1.3e+02 Score=21.78 Aligned_cols=44 Identities=20% Similarity=0.411 Sum_probs=27.6
Q ss_pred eEEEEEecCcce--eEcccCCCceEEeCCCC-CCcceEEEEEecCCcEE
Q 025025 191 VRVSVKGANTQW--LSMSRNWGQNWQSNAQL-VGQALSFRVTGSDRRTS 236 (259)
Q Consensus 191 ~sVei~~~g~~w--~~m~r~~gn~W~~~~~~-~g~p~~vRvTs~~G~~v 236 (259)
++|+|.++=..| .+|+|.....|+..-.+ .| .+..|+. .+|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G-~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPG-RYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCC-cEEEEEE-ECCEEe
Confidence 788998764467 46888765678865433 34 4555554 356655
No 34
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.06 E-value=94 Score=26.54 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=21.6
Q ss_pred ceEEEEEecCCc-EEEEccccCCCCCCCcE
Q 025025 223 ALSFRVTGSDRR-TSTSWNVAPANWQFGQT 251 (259)
Q Consensus 223 p~~vRvTs~~G~-~v~a~~viP~~w~~G~~ 251 (259)
.++|+|||...+ .|++..++|+.|+.|.-
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (159)
T PRK13150 79 KVNFSLYDAEGSVTVSYEGILPDLFREGQG 108 (159)
T ss_pred EEEEEEEcCCcEEEEEEeccCCccccCCCe
Confidence 578888886554 55567899999888763
No 35
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=21.87 E-value=2.5e+02 Score=27.15 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=29.4
Q ss_pred cceeEEEEEecCc-ceeEcccCC-------C-----ceEEeCCC---CCCc-ceEEEEEecCCc
Q 025025 188 GDIVRVSVKGANT-QWLSMSRNW-------G-----QNWQSNAQ---LVGQ-ALSFRVTGSDRR 234 (259)
Q Consensus 188 ~~I~sVei~~~g~-~w~~m~r~~-------g-----n~W~~~~~---~~g~-p~~vRvTs~~G~ 234 (259)
..|++|||...++ +|+...... + -.|++.-. .+|. -+.+|-||..|+
T Consensus 300 ~~I~rVeVS~DgG~tW~~A~L~~~~~~~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G~ 363 (386)
T cd02112 300 RRVTRVEVSLDDGKSWKLASIDYPEDPTKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESMN 363 (386)
T ss_pred CcEEEEEEEcCCCCCceeCCCCCCCCccccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCCC
Confidence 3799999998875 799886531 1 13444421 1342 566677777774
No 36
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=21.50 E-value=3.3e+02 Score=19.78 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=34.4
Q ss_pred EEEEeecCCcceeEEEEEecCccee---EcccCCCceEEeCCCC-CCcceEEEEEecCCcEEEEc
Q 025025 179 VLVTNVAGAGDIVRVSVKGANTQWL---SMSRNWGQNWQSNAQL-VGQALSFRVTGSDRRTSTSW 239 (259)
Q Consensus 179 v~v~n~~g~~~I~sVei~~~g~~w~---~m~r~~gn~W~~~~~~-~g~p~~vRvTs~~G~~v~a~ 239 (259)
+.++..+ +-++|+|.++=..|+ +|.|..+. |...-.| .| .+.+|+.- +|+++...
T Consensus 4 v~f~~~~---~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~L~~g-~y~YkF~V-dg~w~~d~ 62 (79)
T cd02859 4 TTFVWPG---GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATLRLPPG-KYQYKFIV-DGEWRHSP 62 (79)
T ss_pred EEEEEcC---CCcEEEEEEEcCCCCccccceECCCC-cEEEEEcCCC-CEEEEEEE-CCEEEeCC
Confidence 4444444 457899998644676 48887655 7764433 34 56666654 67877754
No 37
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=20.45 E-value=44 Score=26.56 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=17.3
Q ss_pred HhhhcccCCccCCCCeeEEEEEEeCCCCC
Q 025025 18 ATANAKIPGVFAGGPWQSAHATFYGGSDA 46 (259)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~ 46 (259)
+.-|.|+||+|. -+.|||.+|-
T Consensus 8 ~eyn~~vhGpy~-------p~ryYGk~Dt 29 (104)
T PF10206_consen 8 KEYNPKVHGPYD-------PARYYGKKDT 29 (104)
T ss_pred hhhCccccCCCC-------chhhcCCCCC
Confidence 446999999987 4679998763
No 38
>PRK10301 hypothetical protein; Provisional
Probab=20.28 E-value=1.6e+02 Score=23.77 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=21.9
Q ss_pred cccCCeEEEEEEEeeccc---CCceEEEEc
Q 025025 145 QYRAGIVPVSYRRVPCRK---RGGIRFTIN 171 (259)
Q Consensus 145 ~~~~G~v~i~~r~V~C~~---~gni~~~v~ 171 (259)
.+..|.+.|+||-|+=+- .|.+.|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 357899999999999873 567888775
No 39
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.00 E-value=1.2e+02 Score=25.94 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=20.5
Q ss_pred ceEEEEEecCCc-EEEEccccCCCCCCCcE
Q 025025 223 ALSFRVTGSDRR-TSTSWNVAPANWQFGQT 251 (259)
Q Consensus 223 p~~vRvTs~~G~-~v~a~~viP~~w~~G~~ 251 (259)
.++|+|||...+ .|++..++|+.|+.|.-
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (160)
T PRK13165 79 KVSFTLYDAGGSVTVTYEGILPDLFREGQG 108 (160)
T ss_pred EEEEEEEcCCeEEEEEEcccCCccccCCCe
Confidence 468888875443 55567889988888763
Done!