BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025028
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HNS5|GLPK_HALSA Glycerol kinase OS=Halobacterium salinarum (strain ATCC 700922 /
JCM 11081 / NRC-1) GN=glpK PE=3 SV=1
Length = 510
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 173 SGVHIKKCSGCV-GMCVNMCKFPTQDFFTREFGLPLTMIPNFEDMSCEMVYGQVPP 227
+G HI S M N+ D+ EF +P M+P S E VYG P
Sbjct: 184 TGEHITDVSNASRTMLYNITDLEWDDWLLEEFDIPREMLPEVRPSSDEAVYGHTDP 239
>sp|B0R6S2|GLPK_HALS3 Glycerol kinase OS=Halobacterium salinarum (strain ATCC 29341 / DSM
671 / R1) GN=glpK PE=3 SV=1
Length = 510
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 173 SGVHIKKCSGCV-GMCVNMCKFPTQDFFTREFGLPLTMIPNFEDMSCEMVYGQVPP 227
+G HI S M N+ D+ EF +P M+P S E VYG P
Sbjct: 184 TGEHITDVSNASRTMLYNITDLEWDDWLLEEFDIPREMLPEVRPSSDEAVYGHTDP 239
>sp|A0MT11|GET4_SALSA Golgi to ER traffic protein 4 homolog OS=Salmo salar GN=get4 PE=2
SV=1
Length = 322
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 84/226 (37%), Gaps = 15/226 (6%)
Query: 29 TRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFG 88
R G G+ +K Y + + + TLF R + + + + F F
Sbjct: 14 NRGGTQRVEGKLRASVEKGDYYEA--HQMYRTLFFRYISQAKHTDARELMYNGAQLF-FS 70
Query: 89 YD-YESFVDVSKRVMEGRSRQQ---QQEVVREV--LLSMLPPGAPAQFRKLFPPTKWAAE 142
Y+ S D+S V+E + + + E + + L S++ P +P + + KW+
Sbjct: 71 YNQLNSAADLSMLVLESLEKSEAKVEDEDLEHLAKLFSLMDPNSPERVAFVSRALKWSTG 130
Query: 143 FNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCSGCVGMCVNMCK---FPTQ-DF 198
+ L P H L+ + E + E + +H GC M V F ++ D
Sbjct: 131 GSGKLGAPKLHQLLAVTLWKEQNYS-ESRYHFLHSSDGEGCAQMLVEYSAQRGFRSEVDM 189
Query: 199 FTREFGLPLTMIPNFEDMSCEM-VYGQVPPSFEDDPVSTQPCFTDI 243
F + L + N S Y Q PS E DP QP I
Sbjct: 190 FVAQAVLQFLCLKNKNSASVVFSTYTQKHPSIEKDPPFVQPLLNFI 235
>sp|Q9D1H7|GET4_MOUSE Golgi to ER traffic protein 4 homolog OS=Mus musculus GN=Get4 PE=2
SV=2
Length = 327
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 17/227 (7%)
Query: 29 TRCGIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKF-ASPAKSKTETKKKRWFDF 87
R G+ G+ +K Y + + + TLF R M + + A+ + +F
Sbjct: 19 NRGGVQRVEGKLRASVEKGDYYEA--HQMYRTLFFRYMSQSKHAEARELMYSGALLFFSH 76
Query: 88 GYDYESFVDVSKRVMEGRSRQQQQEVVREVL------LSMLPPGAPAQFRKLFPPTKWAA 141
G S D+S V+E + + +V E+L S++ P +P + + KW++
Sbjct: 77 GQQ-NSAADLSMLVLESLEKAEV-DVADELLENLAKVFSLMDPNSPERVAFVSRALKWSS 134
Query: 142 EFNAALTVPFFHWLVGPSEVVEVEINGEKQRSGVHIKKCSGCVGMCVNMCK---FPTQ-D 197
+ L P H L+ + E + E + +H GC M V F ++ D
Sbjct: 135 GGSGKLGHPRLHQLLALTLWKE-QNYCESRYHFLHSSDGEGCANMLVEYSTARGFRSEVD 193
Query: 198 FFTREFGLPLTMIPNFED-MSCEMVYGQVPPSFEDDPVSTQPCFTDI 243
F + L + N + Y Q PS ED P QP I
Sbjct: 194 MFVAQAVLQFLCLKNKNSALVVFTTYTQKHPSIEDGPPFVQPLLNFI 240
>sp|P67223|Y1945_MYCBO UPF0098 protein Mb1945c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb1945c PE=3 SV=1
Length = 201
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 132 KLFPPTKWAAEFNAALTV--------PFFHWLV-GPSEVVEVEINGEKQRSGVHIKKCSG 182
+ PP W+A F AL V P+ HW+V G + +GE G+ + SG
Sbjct: 83 NIAPPLTWSAPFGGALVVDDPDAPREPYVHWIVIGIAPGAGSTADGETPGGGISLPNSSG 142
>sp|P67222|Y1910_MYCTU UPF0098 protein Rv1910c/MT1961 OS=Mycobacterium tuberculosis
GN=Rv1910c PE=3 SV=1
Length = 201
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 132 KLFPPTKWAAEFNAALTV--------PFFHWLV-GPSEVVEVEINGEKQRSGVHIKKCSG 182
+ PP W+A F AL V P+ HW+V G + +GE G+ + SG
Sbjct: 83 NIAPPLTWSAPFGGALVVDDPDAPREPYVHWIVIGIAPGAGSTADGETPGGGISLPNSSG 142
>sp|Q5HBT2|HTPG_EHRRW Chaperone protein HtpG OS=Ehrlichia ruminantium (strain
Welgevonden) GN=htpG PE=3 SV=1
Length = 637
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 32 GIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFG 88
GI + S P + ++T N+ EK +L R + + A+S E K W +FG
Sbjct: 322 GIIDSSDLPLNISRETLQNNKIIEKIKRSLVKRVLSELKKKAESNIEDYTKFWDNFG 378
>sp|Q5FHC4|HTPG_EHRRG Chaperone protein HtpG OS=Ehrlichia ruminantium (strain Gardel)
GN=htpG PE=3 SV=1
Length = 637
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 32 GIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFG 88
GI + S P + ++T N+ EK +L R + + A+S E K W +FG
Sbjct: 322 GIIDSSDLPLNISRETLQNNKIIEKIKRSLVKRVLSELKKKAESNIEDYTKFWDNFG 378
>sp|Q2GFY5|HTPG_EHRCR Chaperone protein HtpG OS=Ehrlichia chaffeensis (strain Arkansas)
GN=htpG PE=3 SV=1
Length = 637
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 32 GIAEPSGEPAPLGQKTKYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFG 88
GI + S P + ++T N+ EK ++ R + + A+S + KK W +FG
Sbjct: 321 GIIDSSDLPLNISRETLQNNKIIEKIKQSIVNRVLSELKKKAESDIKDYKKFWENFG 377
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,493,393
Number of Sequences: 539616
Number of extensions: 4294223
Number of successful extensions: 8508
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8503
Number of HSP's gapped (non-prelim): 13
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)