Query 025028
Match_columns 259
No_of_seqs 97 out of 99
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 18:44:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hm3_A Nematocyst outer WALL a 55.1 4.4 0.00015 25.6 1.1 14 179-192 7-21 (31)
2 3or1_B Sulfite reductase beta; 36.5 13 0.00044 34.6 1.6 32 161-193 238-270 (386)
3 3j16_B RLI1P; ribosome recycli 36.2 6.6 0.00023 38.7 -0.4 30 164-194 39-68 (608)
4 1x3z_A Peptide: N-glycanase; h 33.0 39 0.0013 31.6 4.2 155 52-215 7-210 (335)
5 1xer_A Ferredoxin; electron tr 29.7 9.6 0.00033 27.5 -0.4 18 175-193 40-57 (103)
6 1dwl_A Ferredoxin I; electron 29.6 14 0.00047 23.4 0.4 15 177-192 6-20 (59)
7 1sj1_A Ferredoxin; thermostabi 29.0 10 0.00034 24.7 -0.3 14 178-192 9-22 (66)
8 2a2p_A Selenoprotein M, SELM p 27.6 17 0.00057 29.9 0.7 48 167-226 9-57 (129)
9 1jb0_C Photosystem I iron-sulf 26.9 16 0.00054 24.8 0.4 18 175-193 5-22 (80)
10 3eun_A Ferredoxin; electron tr 26.5 22 0.00075 24.8 1.1 18 175-193 3-20 (82)
11 2zvs_A Uncharacterized ferredo 24.9 23 0.0008 24.8 1.0 18 175-193 3-20 (85)
12 1rgv_A Ferredoxin; electron tr 24.9 23 0.0008 24.4 1.0 16 177-193 5-20 (80)
13 1rof_A Ferredoxin; electron tr 24.6 22 0.00074 22.6 0.7 16 177-193 7-22 (60)
14 7fd1_A FD1, protein (7-Fe ferr 24.2 26 0.00088 25.7 1.1 18 175-193 34-51 (106)
15 2lyy_A Uncharacterized protein 22.9 86 0.0029 24.4 3.9 41 91-153 11-53 (96)
16 2fdn_A Ferredoxin; electron tr 22.7 26 0.0009 22.3 0.8 16 177-193 5-20 (55)
17 3v53_A RNA-binding protein 25; 22.2 86 0.003 25.2 3.9 70 48-134 37-107 (119)
18 2fgo_A Ferredoxin; allochromat 21.5 28 0.00096 24.1 0.8 16 177-193 5-20 (82)
19 1f2g_A Ferredoxin II; electron 21.5 11 0.00039 24.1 -1.2 15 178-193 6-20 (58)
20 3i9v_9 NADH-quinone oxidoreduc 21.1 20 0.00069 28.2 -0.0 16 177-193 50-65 (182)
No 1
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=55.10 E-value=4.4 Score=25.64 Aligned_cols=14 Identities=57% Similarity=1.348 Sum_probs=12.8
Q ss_pred ec-CCCccccccccc
Q 025028 179 KC-SGCVGMCVNMCK 192 (259)
Q Consensus 179 KC-SgC~GmCvN~CK 192 (259)
.| |||.|-|-.-||
T Consensus 7 tcpsgcsgdcypeck 21 (31)
T 2hm3_A 7 TCPSGCSGDCYPECK 21 (31)
T ss_dssp CCCTTCCGGGTTTTC
T ss_pred cCCCCcCccccCccC
Confidence 58 999999999998
No 2
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=36.52 E-value=13 Score=34.61 Aligned_cols=32 Identities=31% Similarity=0.777 Sum_probs=21.2
Q ss_pred eEEEeecCee-eeceEEEeecCCCcccccccccC
Q 025028 161 VVEVEINGEK-QRSGVHIKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 161 v~~vev~G~~-~~sgV~IeKCSgC~GmCvN~CKi 193 (259)
..++++||.+ ..-.|.-++|-+| |.|+|.|+.
T Consensus 238 ~~~~~~~g~~~~~v~id~~~Ci~C-g~C~~~CP~ 270 (386)
T 3or1_B 238 PITAEVNGQKVKSVAINNDRCMYC-GNCYTMCPA 270 (386)
T ss_dssp EEEEEETTEEEEEEEECTTTCCCC-CHHHHHCTT
T ss_pred ccccccCCccccccccCCCcCCcc-ccHHHhCcH
Confidence 3344446752 2235566899989 889999964
No 3
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=36.23 E-value=6.6 Score=38.67 Aligned_cols=30 Identities=30% Similarity=0.756 Sum_probs=21.2
Q ss_pred EeecCeeeeceEEEeecCCCcccccccccCc
Q 025028 164 VEINGEKQRSGVHIKKCSGCVGMCVNMCKFP 194 (259)
Q Consensus 164 vev~G~~~~sgV~IeKCSgC~GmCvN~CKiP 194 (259)
+++++...+..+.-+-|.|| |+||+-|++=
T Consensus 39 ~~~~~~~~~~~i~~~~c~~~-~~~~~~cp~~ 68 (608)
T 3j16_B 39 IEVTPTSKIAFISEILCIGC-GICVKKCPFD 68 (608)
T ss_dssp EEEETTTTEEEECTTTCCCC-CHHHHHCSSC
T ss_pred EEEcCCCCceEEehhhcccc-ccccccCCcc
Confidence 34445444456666799998 9999999863
No 4
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=33.00 E-value=39 Score=31.64 Aligned_cols=155 Identities=20% Similarity=0.270 Sum_probs=79.1
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCchhhhh-cccccCCCChHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCCC-ChHH
Q 025028 52 GFFEKAFMTLFARKMEKFASPAKSKTETKK-KRWFDFGYDYESFVDVSKRVM-EGRSRQQQQEVVREVLLSMLPP-GAPA 128 (259)
Q Consensus 52 s~lD~~~i~lF~rkm~~~~G~~~~~~~~~k-~~~~~~~~gYdglVe~a~~~m-~grs~~~q~~~v~~vL~sl~Pp-~~~~ 128 (259)
+..|+++..+=...+....+.. +..+++ ..+...-.=+..|+..++.+| .-.++.-|..+ ++++|- .+-.
T Consensus 7 ~~~~~~~~~y~~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~~l~~~s~~~~~~Yed~~~~~~a-----l~~iP~d~l~~ 79 (335)
T 1x3z_A 7 SIAKMLLIKYKDFILSKFKKAA--PVENIRFQNLVHTNQFAQGVLGQSQHLCTVYDNPSWHSIV-----LETLDLDLIYK 79 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCC--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCCHHHHHHH-----HHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccc--chhhHHHHHHhhHHHHHHHHHHHHHhHHHHhCCHHHHHHH-----HHhCCHHHHHH
Confidence 3456666666666666665432 121111 001110002455666677777 67777776555 577772 2211
Q ss_pred HHHhhc-------CC----chhHHHHHhhhhhhhhcccccce-e--------eEE-Eee---cC---eeeeceEEEeecC
Q 025028 129 QFRKLF-------PP----TKWAAEFNAALTVPFFHWLVGPS-E--------VVE-VEI---NG---EKQRSGVHIKKCS 181 (259)
Q Consensus 129 ~fr~lf-------pp----~~~a~e~nA~~T~~~f~WLvGP~-e--------v~~-vev---~G---~~~~sgV~IeKCS 181 (259)
--.+.+ +. ..+..++..||..-||.|---|- . +.. +.. .. ....+.|.+-+|+
T Consensus 80 ~a~~~~~~~~~~~~~~~~~d~ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~ 159 (335)
T 1x3z_A 80 NVDKEFAKDGHAEGENIYTDYLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCN 159 (335)
T ss_dssp HHHHHHHHCCSSSSCTHHHHHHHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEET
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHhcCCEeeCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecC
Confidence 111111 11 13578889999999999984332 1 111 111 00 0124679999998
Q ss_pred CCc-------------------ccccccccCcchhhhhhhcCCceeeccCCcc
Q 025028 182 GCV-------------------GMCVNMCKFPTQDFFTREFGLPLTMIPNFED 215 (259)
Q Consensus 182 gC~-------------------GmCvN~CKiPTQ~FF~d~~GlpLtM~PNFeD 215 (259)
.|- |.|-..+-+ -.++-..+|+|..+.=|++|
T Consensus 160 ~C~~~~rFPRYn~~~~ll~tr~G~C~e~A~l--F~~llRalGi~aR~V~~~~~ 210 (335)
T 1x3z_A 160 RCGNITRFPRYNDPIKLLETRKGRCGEWCNL--FTLILKSFGLDVRYVWNRED 210 (335)
T ss_dssp TTCCEEEEEEECCHHHHHHHCEECHHHHHHH--HHHHHHTTTCCEEEEEETTT
T ss_pred CCCcccccCCcCCHHHHHHhCCcChHHHHHH--HHHHHHHCCCCeEEEecCCC
Confidence 663 233221100 11233568999988877655
No 5
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=29.71 E-value=9.6 Score=27.51 Aligned_cols=18 Identities=33% Similarity=0.816 Sum_probs=14.5
Q ss_pred EEEeecCCCcccccccccC
Q 025028 175 VHIKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 175 V~IeKCSgC~GmCvN~CKi 193 (259)
+.-++|.+| |.|+..|+.
T Consensus 40 id~~~C~~C-g~C~~~CP~ 57 (103)
T 1xer_A 40 VDFDLCIAD-GSCINACPV 57 (103)
T ss_dssp EETTTCCCC-CHHHHHCTT
T ss_pred EehhhCCCh-hhHHHHcCc
Confidence 444689999 899999974
No 6
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=29.56 E-value=14 Score=23.44 Aligned_cols=15 Identities=40% Similarity=1.227 Sum_probs=12.2
Q ss_pred EeecCCCccccccccc
Q 025028 177 IKKCSGCVGMCVNMCK 192 (259)
Q Consensus 177 IeKCSgC~GmCvN~CK 192 (259)
-++|.+| |.|+..|+
T Consensus 6 ~~~C~~C-~~C~~~Cp 20 (59)
T 1dwl_A 6 HEECIGC-ESCVELCP 20 (59)
T ss_dssp SCCCSSC-CGGGGTST
T ss_pred hhhCcCh-hHHHHHCC
Confidence 3689888 67999997
No 7
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=29.01 E-value=10 Score=24.70 Aligned_cols=14 Identities=29% Similarity=1.020 Sum_probs=12.3
Q ss_pred eecCCCccccccccc
Q 025028 178 KKCSGCVGMCVNMCK 192 (259)
Q Consensus 178 eKCSgC~GmCvN~CK 192 (259)
++|.+| |.|++.|+
T Consensus 9 ~~C~~C-~~C~~~Cp 22 (66)
T 1sj1_A 9 DTCIGD-AICASLCP 22 (66)
T ss_dssp TTCCCC-CHHHHHCT
T ss_pred ccCcCc-hHHHHhCC
Confidence 689888 78999997
No 8
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=27.61 E-value=17 Score=29.92 Aligned_cols=48 Identities=19% Similarity=0.472 Sum_probs=35.2
Q ss_pred cCeeeeceEEEeecCCCcccccccccCc-chhhhhhhcCCceeeccCCccceeeEeeCCCC
Q 025028 167 NGEKQRSGVHIKKCSGCVGMCVNMCKFP-TQDFFTREFGLPLTMIPNFEDMSCEMVYGQVP 226 (259)
Q Consensus 167 ~G~~~~sgV~IeKCSgC~GmCvN~CKiP-TQ~FF~d~~GlpLtM~PNFeD~SCqm~FG~~P 226 (259)
|+.+.-.+..++-|++|. +=.+| -+.|.+++ .|+|.+..=+++.|..|
T Consensus 9 ~~~~~yarA~lEvC~~Ck-----L~~~PeIk~FIk~d-------~~~y~~v~Vkyi~Ga~P 57 (129)
T 2a2p_A 9 NRLRGLARGRVETCGGCQ-----LNRLKEVKAFVTED-------IQLYHNLVMKHLPGADP 57 (129)
T ss_dssp HHHTTCCEEEEEEETTCC-----CSTTHHHHHHTTTH-------HHHBTTEEEEEESSCCC
T ss_pred hhhcccceEEEEECCCcc-----cccchhHHHHHhCc-------hhhcCceeEEEeCCCCC
Confidence 444445788899998773 44556 79999997 34588888888999876
No 9
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=26.88 E-value=16 Score=24.84 Aligned_cols=18 Identities=33% Similarity=0.831 Sum_probs=14.4
Q ss_pred EEEeecCCCcccccccccC
Q 025028 175 VHIKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 175 V~IeKCSgC~GmCvN~CKi 193 (259)
+..++|.+| |.|+..|+.
T Consensus 5 ~~~~~C~~C-g~C~~~CP~ 22 (80)
T 1jb0_C 5 KIYDTCIGC-TQCVRACPT 22 (80)
T ss_dssp EEETTCCCC-CHHHHHCTT
T ss_pred ccCCcCcCh-hHHHHHCCc
Confidence 445789999 689999973
No 10
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=26.54 E-value=22 Score=24.82 Aligned_cols=18 Identities=22% Similarity=0.709 Sum_probs=14.3
Q ss_pred EEEeecCCCcccccccccC
Q 025028 175 VHIKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 175 V~IeKCSgC~GmCvN~CKi 193 (259)
+.-++|.+| |.|+..|+.
T Consensus 3 ~~~~~C~~C-~~C~~~CP~ 20 (82)
T 3eun_A 3 MITDECINC-DVCEPECPN 20 (82)
T ss_dssp EECTTCCCC-CTTGGGCTT
T ss_pred EeCCCCcCc-cchHHHCCh
Confidence 445789888 699999974
No 11
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=24.94 E-value=23 Score=24.84 Aligned_cols=18 Identities=39% Similarity=0.850 Sum_probs=13.8
Q ss_pred EEEeecCCCcccccccccC
Q 025028 175 VHIKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 175 V~IeKCSgC~GmCvN~CKi 193 (259)
+.-++|.+| |.|+..|+.
T Consensus 3 ~~~~~C~~C-~~C~~~CP~ 20 (85)
T 2zvs_A 3 LITKKCINC-DMCEPECPN 20 (85)
T ss_dssp EECTTCCCC-CTTTTTCTT
T ss_pred EeCCcCcCh-hHHHHHCch
Confidence 345789888 589999974
No 12
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=24.89 E-value=23 Score=24.40 Aligned_cols=16 Identities=31% Similarity=0.920 Sum_probs=12.9
Q ss_pred EeecCCCcccccccccC
Q 025028 177 IKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 177 IeKCSgC~GmCvN~CKi 193 (259)
-++|.+| |.|+..|+.
T Consensus 5 ~~~C~~C-~~C~~~CP~ 20 (80)
T 1rgv_A 5 NDDCTAC-DACVEECPN 20 (80)
T ss_dssp CSCCCCC-CTTTTTCTT
T ss_pred CCCCcCh-hhHHHHcCh
Confidence 4689888 689999964
No 13
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=24.58 E-value=22 Score=22.55 Aligned_cols=16 Identities=44% Similarity=1.205 Sum_probs=12.2
Q ss_pred EeecCCCcccccccccC
Q 025028 177 IKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 177 IeKCSgC~GmCvN~CKi 193 (259)
-++|.+| |.|++.|+.
T Consensus 7 ~~~C~~C-~~C~~~Cp~ 22 (60)
T 1rof_A 7 ADACIGC-GVCENLCPD 22 (60)
T ss_dssp TTTCCSC-CSSTTTCTT
T ss_pred hhhCCCC-hHHHHhCcH
Confidence 3578888 579999973
No 14
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=24.19 E-value=26 Score=25.68 Aligned_cols=18 Identities=28% Similarity=0.890 Sum_probs=13.7
Q ss_pred EEEeecCCCcccccccccC
Q 025028 175 VHIKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 175 V~IeKCSgC~GmCvN~CKi 193 (259)
+..++|.+| |.|+..|+.
T Consensus 34 i~~~~C~~C-g~C~~~CP~ 51 (106)
T 7fd1_A 34 IHPDECIDC-ALCEPECPA 51 (106)
T ss_dssp ECTTTCCCC-CTTGGGCTT
T ss_pred ECcccCCCh-hhhHHhCCC
Confidence 344789888 789999964
No 15
>2lyy_A Uncharacterized protein; DUF3144, PF11342, structural genomics, unknown function; NMR {Shewanella oneidensis}
Probab=22.91 E-value=86 Score=24.36 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCCCChHHHHHhhcCCchhHHHHHhhhhhhhhc
Q 025028 91 YESFVDVSKRVMEGRS--RQQQQEVVREVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFH 153 (259)
Q Consensus 91 YdglVe~a~~~m~grs--~~~q~~~v~~vL~sl~Pp~~~~~fr~lfpp~~~a~e~nA~~T~~~f~ 153 (259)
=|.||++|+....+.. +-+-..+. |+ =++++|||++...|.
T Consensus 11 AD~fI~lAN~q~~~~e~~~g~Vsas~------------------ly----AaARfnAfv~a~~~~ 53 (96)
T 2lyy_A 11 ATELIKLANQQNQNTEIQTGEVSASF------------------MW----ALARYNAWFGSTSFE 53 (96)
T ss_dssp HHHHHHHHHHHHTSTTSCHHHHHHHH------------------HH----HHHHHSGGGGGGTCS
T ss_pred HHHHHHHHHHhhcccCcccchHHHHH------------------HH----HHHHHHHHHHHHhcc
Confidence 4789999998876543 22333322 21 268889988876543
No 16
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=22.69 E-value=26 Score=22.26 Aligned_cols=16 Identities=31% Similarity=0.899 Sum_probs=13.0
Q ss_pred EeecCCCcccccccccC
Q 025028 177 IKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 177 IeKCSgC~GmCvN~CKi 193 (259)
.++|.+| |.|++.|+.
T Consensus 5 ~~~C~~C-~~C~~~CP~ 20 (55)
T 2fdn_A 5 NEACISC-GACEPECPV 20 (55)
T ss_dssp CTTCCCC-CTTGGGCTT
T ss_pred cccCcCh-hhHHHHCCc
Confidence 5688888 689999974
No 17
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=22.17 E-value=86 Score=25.23 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=50.9
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCCCCchhhhhcccccCCCChHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhcCCCCh
Q 025028 48 KYNDGFFEKAFMTLFARKMEKFASPAKSKTETKKKRWFDFGYDYESFVDVSKRV-MEGRSRQQQQEVVREVLLSMLPPGA 126 (259)
Q Consensus 48 ~Y~ds~lD~~~i~lF~rkm~~~~G~~~~~~~~~k~~~~~~~~gYdglVe~a~~~-m~grs~~~q~~~v~~vL~sl~Pp~~ 126 (259)
.|+++.+|+-+--+-.+|+.+.+|.. =|.|||..-.. ....+|.+-++-+..+|..=-..++
T Consensus 37 ~vd~~~i~~~lkPWI~kKI~E~LG~e-----------------Ed~LVdfI~~~L~~~~~pk~l~~~L~~~LDeeA~~FV 99 (119)
T 3v53_A 37 IVDSILMERRIRPWINKKIIEYIGEE-----------------EATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFI 99 (119)
T ss_dssp TSCHHHHHHTHHHHHHHHHHHHTC--------------------CHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCc-----------------hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHH
Confidence 56678888888999999999999952 14578876665 4567888888888888887655555
Q ss_pred HHHHHhhc
Q 025028 127 PAQFRKLF 134 (259)
Q Consensus 127 ~~~fr~lf 134 (259)
-.++|.|+
T Consensus 100 ~kLWrlLI 107 (119)
T 3v53_A 100 VKMWRLLI 107 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666544
No 18
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=21.54 E-value=28 Score=24.10 Aligned_cols=16 Identities=25% Similarity=0.796 Sum_probs=12.7
Q ss_pred EeecCCCcccccccccC
Q 025028 177 IKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 177 IeKCSgC~GmCvN~CKi 193 (259)
-++|.+| |.|+..|+.
T Consensus 5 ~~~C~~C-~~C~~~CP~ 20 (82)
T 2fgo_A 5 TDDCINC-DVCEPECPN 20 (82)
T ss_dssp CTTCCCC-CTTGGGCTT
T ss_pred CCCCCCh-hhHHHHCCh
Confidence 4688888 589999964
No 19
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=21.53 E-value=11 Score=24.12 Aligned_cols=15 Identities=33% Similarity=1.028 Sum_probs=12.6
Q ss_pred eecCCCcccccccccC
Q 025028 178 KKCSGCVGMCVNMCKF 193 (259)
Q Consensus 178 eKCSgC~GmCvN~CKi 193 (259)
++|.+| |.|+..|+.
T Consensus 6 ~~C~~C-~~C~~~CP~ 20 (58)
T 1f2g_A 6 DDCMAC-EACVEICPD 20 (58)
T ss_dssp TTCCCC-CHHHHHCTT
T ss_pred CcCccc-hHHHHhCCc
Confidence 688888 689999984
No 20
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=21.10 E-value=20 Score=28.23 Aligned_cols=16 Identities=38% Similarity=1.194 Sum_probs=13.1
Q ss_pred EeecCCCcccccccccC
Q 025028 177 IKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 177 IeKCSgC~GmCvN~CKi 193 (259)
.+||.+| |.|++.|+.
T Consensus 50 ~~~Ci~C-~~C~~~CP~ 65 (182)
T 3i9v_9 50 LEKCIGC-SLCAAACPA 65 (182)
T ss_dssp CBSCCCC-CHHHHHCTT
T ss_pred CccCccc-ccchhhCCc
Confidence 3699999 689999964
Done!