Query 025028
Match_columns 259
No_of_seqs 97 out of 99
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 18:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025028.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025028hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vjwa_ d.58.1.4 (A:) Ferredox 51.4 1.2 8.5E-05 28.9 -0.5 29 175-207 5-33 (59)
2 d2fug91 d.58.1.5 (9:26-179) NA 48.9 2.4 0.00017 32.3 0.9 29 174-214 67-95 (154)
3 d1rgva_ d.58.1.1 (A:) Ferredox 41.7 4 0.00029 28.1 1.1 16 177-193 5-20 (80)
4 d1bc6a_ d.58.1.2 (A:) Ferredox 40.2 3.8 0.00027 28.0 0.7 18 175-192 3-21 (77)
5 d1blua_ d.58.1.1 (A:) Ferredox 39.3 4.4 0.00032 27.9 0.9 17 176-193 4-20 (80)
6 d1fxda_ d.58.1.4 (A:) Ferredox 39.2 3 0.00022 26.9 0.0 23 178-204 6-28 (58)
7 d2fdna_ d.58.1.1 (A:) Ferredox 34.7 6.6 0.00048 25.0 1.2 16 176-192 4-19 (55)
8 d7fd1a_ d.58.1.2 (A:) Ferredox 31.6 5.2 0.00038 29.1 0.3 19 175-193 3-22 (106)
9 d1h98a_ d.58.1.2 (A:) Ferredox 27.1 7 0.00051 26.7 0.3 17 176-192 4-21 (77)
10 d1fs1b1 a.157.1.1 (B:86-140) C 24.5 33 0.0024 22.2 3.4 24 90-113 26-53 (55)
11 d1dura_ d.58.1.1 (A:) Ferredox 23.0 14 0.001 23.4 1.2 16 177-193 5-20 (55)
12 d1fxra_ d.58.1.4 (A:) Ferredox 21.0 9.6 0.0007 24.6 -0.0 14 178-192 9-22 (64)
13 d3c7bb1 d.58.1.5 (B:197-261) D 20.5 8.6 0.00063 25.7 -0.3 18 175-193 40-57 (65)
14 d2v4jb1 d.58.1.5 (B:209-277) D 20.5 12 0.00089 26.1 0.5 31 157-187 26-60 (69)
15 d1sj1a_ d.58.1.4 (A:) Fe3S4-fe 20.4 8.7 0.00063 24.7 -0.3 14 178-192 9-22 (66)
No 1
>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}
Probab=51.43 E-value=1.2 Score=28.88 Aligned_cols=29 Identities=38% Similarity=0.866 Sum_probs=20.1
Q ss_pred EEEeecCCCcccccccccCcchhhhhhhcCCce
Q 025028 175 VHIKKCSGCVGMCVNMCKFPTQDFFTREFGLPL 207 (259)
Q Consensus 175 V~IeKCSgC~GmCvN~CKiPTQ~FF~d~~GlpL 207 (259)
|.-+||.+| |+|++.| | ..|..++-|...
T Consensus 5 iD~~~C~~C-g~C~~~c--P-~~~~~~~~g~~~ 33 (59)
T d1vjwa_ 5 VDADACIGC-GVCENLC--P-DVFQLGDDGKAK 33 (59)
T ss_dssp ECTTTCCCC-CHHHHHC--T-TTEEECTTSSEE
T ss_pred EeHHHCCCC-CCChHhC--c-hheEEccceeeE
Confidence 445689887 9999999 4 456666556543
No 2
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}
Probab=48.86 E-value=2.4 Score=32.27 Aligned_cols=29 Identities=24% Similarity=0.690 Sum_probs=21.8
Q ss_pred eEEEeecCCCcccccccccCcchhhhhhhcCCceeeccCCc
Q 025028 174 GVHIKKCSGCVGMCVNMCKFPTQDFFTREFGLPLTMIPNFE 214 (259)
Q Consensus 174 gV~IeKCSgC~GmCvN~CKiPTQ~FF~d~~GlpLtM~PNFe 214 (259)
.+...+|.+| |.|+..|+.= -|+|++|||
T Consensus 67 ~id~~~C~~C-G~Cve~CPt~-----------AI~~~~~~e 95 (154)
T d2fug91 67 EINMLRCIFC-GLCEEACPTG-----------AIVLGYDFE 95 (154)
T ss_dssp EEETTTCCCC-THHHHHCSSS-----------CEEECSCCC
T ss_pred EeccccCCCC-CCchhhCCCC-----------eEeccCccc
Confidence 4556789999 9999999841 566777765
No 3
>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}
Probab=41.69 E-value=4 Score=28.12 Aligned_cols=16 Identities=31% Similarity=0.920 Sum_probs=13.5
Q ss_pred EeecCCCcccccccccC
Q 025028 177 IKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 177 IeKCSgC~GmCvN~CKi 193 (259)
-+||.+| |.|++.|+.
T Consensus 5 td~Ci~C-g~C~~~CP~ 20 (80)
T d1rgva_ 5 NDDCTAC-DACVEECPN 20 (80)
T ss_dssp CSCCCCC-CTTTTTCTT
T ss_pred cccCcCC-cCHHHHHHh
Confidence 4789999 789999973
No 4
>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}
Probab=40.19 E-value=3.8 Score=28.03 Aligned_cols=18 Identities=33% Similarity=0.791 Sum_probs=15.2
Q ss_pred EEEeecCCCc-cccccccc
Q 025028 175 VHIKKCSGCV-GMCVNMCK 192 (259)
Q Consensus 175 V~IeKCSgC~-GmCvN~CK 192 (259)
|.-+||.+|. |.|++.|+
T Consensus 3 vv~~~C~~C~~g~C~~~CP 21 (77)
T d1bc6a_ 3 VITEPCIGTKDASCVEVCP 21 (77)
T ss_dssp ECCSTTTTCCCCSSTTTCT
T ss_pred EcCccCCCccCcchhhhCC
Confidence 4468999998 89999995
No 5
>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}
Probab=39.28 E-value=4.4 Score=27.93 Aligned_cols=17 Identities=24% Similarity=0.720 Sum_probs=14.1
Q ss_pred EEeecCCCcccccccccC
Q 025028 176 HIKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 176 ~IeKCSgC~GmCvN~CKi 193 (259)
--+||.+| |+|++.|+.
T Consensus 4 itd~Ci~C-g~C~~~CP~ 20 (80)
T d1blua_ 4 ITDECINC-DVCEPECPN 20 (80)
T ss_dssp ECTTCCCC-CTTGGGCTT
T ss_pred eCcCCCCh-HHHHHHChh
Confidence 34789999 789999984
No 6
>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}
Probab=39.22 E-value=3 Score=26.91 Aligned_cols=23 Identities=35% Similarity=0.839 Sum_probs=15.9
Q ss_pred eecCCCcccccccccCcchhhhhhhcC
Q 025028 178 KKCSGCVGMCVNMCKFPTQDFFTREFG 204 (259)
Q Consensus 178 eKCSgC~GmCvN~CKiPTQ~FF~d~~G 204 (259)
++|.|| |.|++.|+ +.|..++=|
T Consensus 6 e~CigC-g~C~~~CP---~~~~~~~~g 28 (58)
T d1fxda_ 6 DDCMAC-EACVEICP---DVFEMNEEG 28 (58)
T ss_dssp TTCCCC-CHHHHHCT---TTEEECSSS
T ss_pred ccCcCh-hhHHHHcC---hhheEcCCC
Confidence 678787 79999997 355544444
No 7
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}
Probab=34.73 E-value=6.6 Score=25.02 Aligned_cols=16 Identities=31% Similarity=0.852 Sum_probs=13.0
Q ss_pred EEeecCCCccccccccc
Q 025028 176 HIKKCSGCVGMCVNMCK 192 (259)
Q Consensus 176 ~IeKCSgC~GmCvN~CK 192 (259)
.-+||.+| |.|++.|+
T Consensus 4 i~e~C~~C-g~C~~~Cp 19 (55)
T d2fdna_ 4 INEACISC-GACEPECP 19 (55)
T ss_dssp ECTTCCCC-CTTGGGCT
T ss_pred eCcCCCCh-hhHHHhcC
Confidence 44789898 68999995
No 8
>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}
Probab=31.62 E-value=5.2 Score=29.10 Aligned_cols=19 Identities=32% Similarity=0.786 Sum_probs=14.4
Q ss_pred EEEeecCCCc-ccccccccC
Q 025028 175 VHIKKCSGCV-GMCVNMCKF 193 (259)
Q Consensus 175 V~IeKCSgC~-GmCvN~CKi 193 (259)
|.-++|.+|. |.|++.|+.
T Consensus 3 vi~~~C~~C~~~~C~~~CP~ 22 (106)
T d7fd1a_ 3 VVTDNCIKCKYTDCVEVCPV 22 (106)
T ss_dssp EECGGGTTTCCCHHHHHCTT
T ss_pred EcCccCCCCCCCccccccCC
Confidence 4457888887 889998853
No 9
>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}
Probab=27.13 E-value=7 Score=26.68 Aligned_cols=17 Identities=29% Similarity=0.741 Sum_probs=14.4
Q ss_pred EEeecCCCc-cccccccc
Q 025028 176 HIKKCSGCV-GMCVNMCK 192 (259)
Q Consensus 176 ~IeKCSgC~-GmCvN~CK 192 (259)
.-+||.+|. |.|++.|+
T Consensus 4 v~d~C~~C~~~~C~~~CP 21 (77)
T d1h98a_ 4 ICEPCIGVKDQSCVEVCP 21 (77)
T ss_dssp ECGGGTTTCCCHHHHHCT
T ss_pred eCccCCCcCCchhHHHCC
Confidence 347899997 89999996
No 10
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.48 E-value=33 Score=22.18 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=18.0
Q ss_pred ChHHHHHHHHH-H---hcCCCHHHHHHH
Q 025028 90 DYESFVDVSKR-V---MEGRSRQQQQEV 113 (259)
Q Consensus 90 gYdglVe~a~~-~---m~grs~~~q~~~ 113 (259)
+.++|++++-+ + ++|+|++|.|+.
T Consensus 26 ~I~~Lldl~c~~vA~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 26 DIKGLLDVTCKTVANMIKGKTPEEIRKT 53 (55)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 56788888654 3 579999998764
No 11
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}
Probab=22.96 E-value=14 Score=23.36 Aligned_cols=16 Identities=31% Similarity=0.902 Sum_probs=12.6
Q ss_pred EeecCCCcccccccccC
Q 025028 177 IKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 177 IeKCSgC~GmCvN~CKi 193 (259)
-+||.+| |.|++.|+.
T Consensus 5 ~d~C~~C-~~C~~~CP~ 20 (55)
T d1dura_ 5 NDSCIAC-GACKPECPV 20 (55)
T ss_dssp CTTCCCC-CCSGGGCTT
T ss_pred CccCcCh-hHHHhhCCc
Confidence 4689888 579999963
No 12
>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}
Probab=20.95 E-value=9.6 Score=24.56 Aligned_cols=14 Identities=29% Similarity=0.937 Sum_probs=11.5
Q ss_pred eecCCCccccccccc
Q 025028 178 KKCSGCVGMCVNMCK 192 (259)
Q Consensus 178 eKCSgC~GmCvN~CK 192 (259)
.+|.|| |.|+.+|+
T Consensus 9 ~~CigC-g~C~~~cP 22 (64)
T d1fxra_ 9 DECIAC-ESCVEIAP 22 (64)
T ss_dssp TTCCCC-CHHHHHCT
T ss_pred hhCccC-CCccccCc
Confidence 589888 66999996
No 13
>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.51 E-value=8.6 Score=25.68 Aligned_cols=18 Identities=44% Similarity=1.003 Sum_probs=14.9
Q ss_pred EEEeecCCCcccccccccC
Q 025028 175 VHIKKCSGCVGMCVNMCKF 193 (259)
Q Consensus 175 V~IeKCSgC~GmCvN~CKi 193 (259)
+.-+||.|| |.|+..|+.
T Consensus 40 id~~~CigC-g~C~~aCP~ 57 (65)
T d3c7bb1 40 VDVEKCMYC-GNCYTMCPG 57 (65)
T ss_dssp ECTTTCCCC-CHHHHHCTT
T ss_pred EeCCcCccc-ChhhhhCCc
Confidence 344899999 999999984
No 14
>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=20.50 E-value=12 Score=26.09 Aligned_cols=31 Identities=23% Similarity=0.559 Sum_probs=19.2
Q ss_pred cceeeEEEeecCeeeece-EEEeec---CCCcccc
Q 025028 157 GPSEVVEVEINGEKQRSG-VHIKKC---SGCVGMC 187 (259)
Q Consensus 157 GP~ev~~vev~G~~~~sg-V~IeKC---SgC~GmC 187 (259)
|.-....+|++|.+.+|. |.-+|| .+|--||
T Consensus 26 ~AIrP~k~~~~~~~~ksV~V~~eRCMyCGNCYT~c 60 (69)
T d2v4jb1 26 AAVRPTKLEIGDKKVNTIAIKNERCMYCGNCYTMC 60 (69)
T ss_dssp CCEEEEEEEETTEEEEEEEECGGGCCCCCHHHHHC
T ss_pred ccccccccccCCcccceEEEcCCcceecCCccccC
Confidence 333444566777655554 778899 6666665
No 15
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}
Probab=20.43 E-value=8.7 Score=24.66 Aligned_cols=14 Identities=29% Similarity=1.020 Sum_probs=12.0
Q ss_pred eecCCCccccccccc
Q 025028 178 KKCSGCVGMCVNMCK 192 (259)
Q Consensus 178 eKCSgC~GmCvN~CK 192 (259)
+||.+| |.|++.|+
T Consensus 9 ~~Ci~C-g~C~~~CP 22 (66)
T d1sj1a_ 9 DTCIGD-AICASLCP 22 (66)
T ss_dssp TTCCCC-CHHHHHCT
T ss_pred HHCCCc-ChhhhhCC
Confidence 689888 67999997
Done!